Query 005313
Match_columns 703
No_of_seqs 464 out of 2683
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 21:30:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 7E-76 1.5E-80 639.4 37.8 382 175-556 92-479 (519)
2 PTZ00110 helicase; Provisional 100.0 6.7E-67 1.4E-71 595.5 47.4 407 149-556 104-515 (545)
3 KOG0336 ATP-dependent RNA heli 100.0 1.1E-68 2.4E-73 549.4 27.7 408 147-556 185-603 (629)
4 KOG0339 ATP-dependent RNA heli 100.0 6.3E-67 1.4E-71 548.7 35.1 411 144-556 193-606 (731)
5 KOG0333 U5 snRNP-like RNA heli 100.0 1.2E-66 2.7E-71 549.6 34.1 409 142-553 210-653 (673)
6 KOG0335 ATP-dependent RNA heli 100.0 7.1E-65 1.5E-69 544.3 31.0 393 160-554 60-473 (482)
7 KOG0330 ATP-dependent RNA heli 100.0 1.2E-64 2.6E-69 519.0 30.1 366 170-542 57-424 (476)
8 PRK10590 ATP-dependent RNA hel 100.0 2E-62 4.4E-67 549.9 46.2 363 175-540 2-367 (456)
9 PLN00206 DEAD-box ATP-dependen 100.0 1.7E-62 3.6E-67 557.6 43.6 403 150-555 97-505 (518)
10 COG0513 SrmB Superfamily II DN 100.0 1.4E-62 3.1E-67 555.2 40.2 364 174-540 29-396 (513)
11 KOG0341 DEAD-box protein abstr 100.0 2.9E-64 6.2E-69 513.8 16.8 400 150-553 146-557 (610)
12 PRK04537 ATP-dependent RNA hel 100.0 1.3E-59 2.8E-64 537.5 50.5 363 174-539 9-378 (572)
13 KOG0328 Predicted ATP-dependen 100.0 9E-61 1.9E-65 471.5 27.7 383 162-551 15-399 (400)
14 KOG0342 ATP-dependent RNA heli 100.0 8.8E-60 1.9E-64 496.5 29.5 363 172-534 80-446 (543)
15 PRK04837 ATP-dependent RNA hel 100.0 2.4E-58 5.1E-63 513.1 42.1 365 173-540 7-377 (423)
16 KOG0334 RNA helicase [RNA proc 100.0 3.9E-59 8.5E-64 530.4 31.1 402 152-555 342-750 (997)
17 KOG0338 ATP-dependent RNA heli 100.0 2.3E-59 5E-64 492.6 23.7 359 174-536 181-544 (691)
18 PRK11776 ATP-dependent RNA hel 100.0 6.4E-57 1.4E-61 506.8 40.3 358 174-539 4-363 (460)
19 PRK11634 ATP-dependent RNA hel 100.0 7.4E-57 1.6E-61 517.9 40.5 356 173-535 5-362 (629)
20 KOG0345 ATP-dependent RNA heli 100.0 3.1E-57 6.6E-62 473.9 31.9 355 175-530 5-369 (567)
21 KOG0326 ATP-dependent RNA heli 100.0 1.9E-58 4.1E-63 461.7 18.6 367 174-548 85-452 (459)
22 PRK11192 ATP-dependent RNA hel 100.0 8.2E-56 1.8E-60 494.5 42.1 362 175-539 2-366 (434)
23 KOG0340 ATP-dependent RNA heli 100.0 5.5E-57 1.2E-61 457.7 26.9 363 173-539 6-375 (442)
24 KOG0343 RNA Helicase [RNA proc 100.0 4.7E-56 1E-60 471.2 28.0 355 172-528 67-425 (758)
25 PRK01297 ATP-dependent RNA hel 100.0 7.4E-54 1.6E-58 483.5 46.8 368 171-541 84-458 (475)
26 KOG0348 ATP-dependent RNA heli 100.0 4.3E-55 9.4E-60 462.7 29.0 363 173-535 135-564 (708)
27 PTZ00424 helicase 45; Provisio 100.0 2.2E-52 4.7E-57 462.3 38.0 361 173-540 27-389 (401)
28 KOG0346 RNA helicase [RNA proc 100.0 1.2E-53 2.5E-58 443.2 25.9 365 174-539 19-424 (569)
29 KOG0347 RNA helicase [RNA proc 100.0 2.4E-52 5.1E-57 443.2 16.3 369 169-541 176-586 (731)
30 KOG0332 ATP-dependent RNA heli 100.0 5.3E-50 1.2E-54 408.9 28.4 360 171-540 87-459 (477)
31 KOG0327 Translation initiation 100.0 2.5E-49 5.3E-54 408.1 23.0 370 172-550 24-395 (397)
32 KOG0344 ATP-dependent RNA heli 100.0 1.1E-48 2.4E-53 421.6 28.4 396 155-553 113-523 (593)
33 TIGR03817 DECH_helic helicase/ 100.0 9.1E-48 2E-52 450.6 36.9 343 180-538 20-401 (742)
34 KOG0337 ATP-dependent RNA heli 100.0 1.2E-49 2.5E-54 411.8 17.8 360 173-537 20-380 (529)
35 PLN03137 ATP-dependent DNA hel 100.0 4.2E-46 9E-51 434.2 37.9 335 181-534 444-796 (1195)
36 KOG4284 DEAD box protein [Tran 100.0 8.3E-48 1.8E-52 413.7 21.4 355 165-527 16-381 (980)
37 TIGR00614 recQ_fam ATP-depende 100.0 2.7E-45 6E-50 412.7 36.2 324 192-535 7-343 (470)
38 KOG0350 DEAD-box ATP-dependent 100.0 3.5E-46 7.5E-51 393.0 23.1 350 185-538 148-553 (620)
39 PRK02362 ski2-like helicase; P 100.0 9.3E-44 2E-48 420.3 35.9 336 175-525 2-397 (737)
40 PRK11057 ATP-dependent DNA hel 100.0 1.9E-43 4.1E-48 408.2 37.2 320 192-534 21-352 (607)
41 PRK13767 ATP-dependent helicas 100.0 6.6E-43 1.4E-47 417.2 34.5 341 181-524 18-397 (876)
42 TIGR01389 recQ ATP-dependent D 100.0 1E-42 2.3E-47 402.5 35.1 321 192-534 9-340 (591)
43 TIGR00580 mfd transcription-re 100.0 9.3E-42 2E-46 403.7 39.5 352 181-557 436-807 (926)
44 PRK00254 ski2-like helicase; P 100.0 5E-42 1.1E-46 404.6 36.3 336 175-526 2-389 (720)
45 PRK10917 ATP-dependent DNA hel 100.0 1.3E-40 2.7E-45 388.8 38.8 350 183-557 248-621 (681)
46 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.2E-41 2E-45 385.0 34.3 312 193-523 13-389 (844)
47 PRK10689 transcription-repair 100.0 2.8E-40 6E-45 398.9 40.0 346 187-557 592-956 (1147)
48 PRK01172 ski2-like helicase; P 100.0 8.9E-41 1.9E-45 392.1 34.4 334 175-525 2-378 (674)
49 TIGR00643 recG ATP-dependent D 100.0 4.6E-40 1E-44 381.6 39.0 350 184-557 224-598 (630)
50 KOG0329 ATP-dependent RNA heli 100.0 6.5E-42 1.4E-46 333.6 14.3 334 174-547 42-378 (387)
51 COG0514 RecQ Superfamily II DN 100.0 6.2E-39 1.3E-43 356.3 29.3 323 193-536 14-348 (590)
52 COG1201 Lhr Lhr-like helicases 100.0 2.7E-38 5.9E-43 362.8 31.4 338 181-524 8-361 (814)
53 PRK09751 putative ATP-dependen 100.0 2E-38 4.4E-43 384.3 31.9 291 216-512 1-371 (1490)
54 PHA02558 uvsW UvsW helicase; P 100.0 8.2E-37 1.8E-41 346.0 34.1 347 152-522 68-449 (501)
55 PHA02653 RNA helicase NPH-II; 100.0 4.6E-37 1E-41 352.7 30.9 310 199-527 167-516 (675)
56 PRK09401 reverse gyrase; Revie 100.0 2E-36 4.3E-41 366.3 33.6 296 193-512 78-431 (1176)
57 COG1111 MPH1 ERCC4-like helica 100.0 6.4E-36 1.4E-40 318.5 32.8 325 193-526 12-482 (542)
58 PRK14701 reverse gyrase; Provi 100.0 2.9E-36 6.3E-41 371.7 29.7 317 184-522 67-453 (1638)
59 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1E-35 2.2E-40 349.1 32.7 305 198-527 4-338 (819)
60 COG1204 Superfamily II helicas 100.0 8.2E-36 1.8E-40 346.7 29.5 332 180-523 15-406 (766)
61 TIGR01587 cas3_core CRISPR-ass 100.0 6.3E-36 1.4E-40 326.0 26.8 300 213-527 1-338 (358)
62 KOG0349 Putative DEAD-box RNA 100.0 4.5E-37 9.7E-42 318.2 14.5 275 247-524 287-614 (725)
63 PRK12898 secA preprotein trans 100.0 8.7E-35 1.9E-39 329.1 33.1 316 195-527 102-588 (656)
64 PRK11664 ATP-dependent RNA hel 100.0 3.9E-35 8.4E-40 345.0 30.9 305 198-527 7-341 (812)
65 PRK13766 Hef nuclease; Provisi 100.0 3.4E-33 7.3E-38 333.5 40.1 325 193-526 12-480 (773)
66 COG1202 Superfamily II helicas 100.0 3.3E-34 7.2E-39 306.4 27.9 337 174-525 194-553 (830)
67 TIGR00603 rad25 DNA repair hel 100.0 1.1E-33 2.3E-38 323.7 31.7 322 195-541 254-625 (732)
68 TIGR01054 rgy reverse gyrase. 100.0 1.2E-33 2.6E-38 342.5 31.4 291 184-497 66-409 (1171)
69 KOG0354 DEAD-box like helicase 100.0 3.6E-33 7.7E-38 313.5 31.3 334 180-523 46-527 (746)
70 PRK09200 preprotein translocas 100.0 5.4E-33 1.2E-37 320.8 31.6 316 196-527 78-543 (790)
71 KOG0352 ATP-dependent DNA heli 100.0 7.2E-33 1.6E-37 287.1 24.2 332 186-534 8-371 (641)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 3E-32 6.6E-37 295.9 30.5 291 200-510 1-357 (357)
73 TIGR03714 secA2 accessory Sec 100.0 2.8E-32 6.1E-37 312.0 31.2 318 196-527 68-539 (762)
74 KOG0351 ATP-dependent DNA heli 100.0 8.6E-33 1.9E-37 323.4 25.7 330 188-534 256-601 (941)
75 COG1205 Distinct helicase fami 100.0 1E-31 2.3E-36 316.5 31.0 332 181-523 55-420 (851)
76 KOG0952 DNA/RNA helicase MER3/ 100.0 7.1E-32 1.5E-36 305.3 26.6 332 193-531 107-497 (1230)
77 TIGR00963 secA preprotein tran 100.0 1.5E-31 3.2E-36 304.3 29.2 316 195-527 55-519 (745)
78 PRK04914 ATP-dependent helicas 100.0 8.9E-31 1.9E-35 309.3 35.7 334 196-539 152-617 (956)
79 COG1200 RecG RecG-like helicas 100.0 1.7E-30 3.7E-35 288.1 34.5 351 183-557 249-623 (677)
80 COG1061 SSL2 DNA or RNA helica 100.0 2.5E-30 5.4E-35 287.9 28.4 296 195-512 35-376 (442)
81 PRK11131 ATP-dependent RNA hel 100.0 3.2E-30 6.9E-35 308.3 29.8 301 198-527 76-413 (1294)
82 KOG0353 ATP-dependent DNA heli 100.0 1.2E-29 2.5E-34 259.5 21.1 330 181-527 78-469 (695)
83 PRK05580 primosome assembly pr 100.0 1.1E-28 2.4E-33 287.5 30.9 311 196-529 144-553 (679)
84 PRK09694 helicase Cas3; Provis 100.0 9.7E-28 2.1E-32 282.0 36.2 354 194-556 284-728 (878)
85 cd00268 DEADc DEAD-box helicas 100.0 9.8E-29 2.1E-33 247.5 23.8 202 176-379 1-202 (203)
86 COG1197 Mfd Transcription-repa 100.0 1.6E-27 3.4E-32 277.6 33.2 351 182-557 580-950 (1139)
87 KOG0951 RNA helicase BRR2, DEA 100.0 1.2E-27 2.7E-32 273.6 26.3 340 179-529 294-706 (1674)
88 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.2E-27 2.6E-32 287.3 27.3 303 201-527 72-406 (1283)
89 PRK11448 hsdR type I restricti 100.0 5.3E-27 1.2E-31 283.0 29.7 309 195-514 412-802 (1123)
90 PLN03142 Probable chromatin-re 100.0 4.8E-26 1E-30 270.0 32.9 327 196-534 169-606 (1033)
91 TIGR00595 priA primosomal prot 100.0 1.8E-26 3.9E-31 260.2 27.2 290 215-527 1-383 (505)
92 KOG0947 Cytoplasmic exosomal R 99.9 1.7E-26 3.7E-31 259.0 23.5 308 196-523 297-721 (1248)
93 KOG0950 DNA polymerase theta/e 99.9 3.5E-26 7.5E-31 258.7 24.9 340 181-533 207-619 (1008)
94 KOG0948 Nuclear exosomal RNA h 99.9 1.1E-26 2.5E-31 254.7 18.9 312 196-525 129-539 (1041)
95 PRK13104 secA preprotein trans 99.9 1.6E-25 3.5E-30 258.3 29.0 319 196-527 82-589 (896)
96 PRK12904 preprotein translocas 99.9 5.6E-25 1.2E-29 253.7 28.9 316 195-527 80-575 (830)
97 PRK12899 secA preprotein trans 99.9 8.7E-25 1.9E-29 251.7 27.5 148 177-333 65-228 (970)
98 COG4581 Superfamily II RNA hel 99.9 5.6E-25 1.2E-29 256.4 25.9 313 191-523 115-535 (1041)
99 PRK12906 secA preprotein trans 99.9 8.6E-25 1.9E-29 251.2 26.2 312 195-527 79-555 (796)
100 COG4098 comFA Superfamily II D 99.9 8.4E-24 1.8E-28 215.4 29.7 297 196-522 97-413 (441)
101 PF00270 DEAD: DEAD/DEAH box h 99.9 1.5E-24 3.3E-29 210.1 17.7 165 198-367 1-168 (169)
102 KOG0385 Chromatin remodeling c 99.9 2.4E-23 5.1E-28 229.9 26.1 329 196-536 167-608 (971)
103 PRK13107 preprotein translocas 99.9 5.7E-23 1.2E-27 236.6 24.6 315 196-527 82-593 (908)
104 COG1203 CRISPR-associated heli 99.9 8.9E-22 1.9E-26 231.9 25.3 326 196-527 195-552 (733)
105 COG4096 HsdR Type I site-speci 99.9 1E-21 2.2E-26 220.9 20.7 296 195-512 164-525 (875)
106 TIGR00348 hsdR type I site-spe 99.9 9.6E-21 2.1E-25 220.9 29.5 298 196-512 238-634 (667)
107 TIGR01407 dinG_rel DnaQ family 99.9 1.8E-20 3.9E-25 225.0 32.0 350 181-539 231-830 (850)
108 COG1643 HrpA HrpA-like helicas 99.9 1.6E-20 3.4E-25 218.3 27.1 307 198-526 52-388 (845)
109 KOG0387 Transcription-coupled 99.9 5.3E-20 1.1E-24 204.7 25.6 318 196-525 205-656 (923)
110 TIGR00631 uvrb excinuclease AB 99.9 4E-19 8.7E-24 205.4 31.8 127 404-531 426-559 (655)
111 KOG0384 Chromodomain-helicase 99.8 2.1E-20 4.5E-25 215.7 19.0 327 195-534 369-818 (1373)
112 KOG0949 Predicted helicase, DE 99.8 6.4E-20 1.4E-24 206.8 21.4 157 196-361 511-671 (1330)
113 KOG0390 DNA repair protein, SN 99.8 1E-18 2.2E-23 199.4 30.1 319 196-524 238-704 (776)
114 COG1110 Reverse gyrase [DNA re 99.8 8.1E-19 1.7E-23 200.2 27.5 284 188-496 74-416 (1187)
115 KOG0922 DEAH-box RNA helicase 99.8 4.8E-19 1E-23 195.5 24.7 306 197-527 52-392 (674)
116 KOG1123 RNA polymerase II tran 99.8 3.9E-20 8.5E-25 195.9 15.5 320 195-539 301-669 (776)
117 KOG0389 SNF2 family DNA-depend 99.8 1.2E-19 2.7E-24 201.5 19.6 332 196-538 399-899 (941)
118 smart00487 DEXDc DEAD-like hel 99.8 2.4E-19 5.2E-24 176.4 19.7 185 192-381 4-190 (201)
119 KOG0923 mRNA splicing factor A 99.8 3.9E-19 8.5E-24 193.9 22.4 307 193-524 262-605 (902)
120 PRK05298 excinuclease ABC subu 99.8 1.5E-18 3.3E-23 201.9 28.3 143 405-548 431-589 (652)
121 COG1198 PriA Primosomal protei 99.8 4.2E-18 9.2E-23 195.5 29.1 349 151-530 164-608 (730)
122 KOG0920 ATP-dependent RNA heli 99.8 2.2E-18 4.9E-23 199.6 26.3 316 196-526 173-545 (924)
123 KOG0392 SNF2 family DNA-depend 99.8 1.8E-18 4E-23 198.9 24.6 331 196-535 975-1462(1549)
124 KOG1000 Chromatin remodeling p 99.8 1.1E-18 2.4E-23 185.1 20.4 314 194-525 196-601 (689)
125 PRK12900 secA preprotein trans 99.8 1.8E-18 3.8E-23 200.4 23.0 126 400-527 578-713 (1025)
126 COG4889 Predicted helicase [Ge 99.8 3E-19 6.5E-24 198.8 15.0 351 183-544 148-620 (1518)
127 COG0556 UvrB Helicase subunit 99.8 1.4E-17 3E-22 179.0 27.1 164 351-524 386-556 (663)
128 PRK12326 preprotein translocas 99.8 1.4E-17 3E-22 188.3 27.3 315 195-526 77-548 (764)
129 PRK07246 bifunctional ATP-depe 99.8 3.3E-17 7.2E-22 194.6 29.3 324 196-539 245-799 (820)
130 KOG0924 mRNA splicing factor A 99.8 2.1E-17 4.6E-22 180.6 21.7 306 195-525 355-697 (1042)
131 PRK08074 bifunctional ATP-depe 99.7 1.7E-15 3.8E-20 183.0 31.8 122 418-539 751-909 (928)
132 TIGR03117 cas_csf4 CRISPR-asso 99.7 3.6E-15 7.7E-20 170.4 32.1 106 418-525 469-616 (636)
133 PRK13103 secA preprotein trans 99.7 2.7E-16 5.9E-21 181.9 22.5 315 195-527 81-593 (913)
134 KOG4150 Predicted ATP-dependen 99.7 1.3E-16 2.7E-21 171.4 15.2 325 193-523 283-638 (1034)
135 KOG0388 SNF2 family DNA-depend 99.7 7.2E-16 1.6E-20 169.0 20.9 149 403-556 1027-1178(1185)
136 KOG0391 SNF2 family DNA-depend 99.7 2.5E-15 5.3E-20 171.7 24.9 133 404-536 1260-1396(1958)
137 KOG0926 DEAH-box RNA helicase 99.7 4.9E-16 1.1E-20 172.7 18.1 307 201-524 261-703 (1172)
138 cd00079 HELICc Helicase superf 99.7 3.3E-16 7.2E-21 144.5 14.3 118 404-521 12-131 (131)
139 PRK12903 secA preprotein trans 99.7 7E-15 1.5E-19 168.6 27.5 310 196-527 78-541 (925)
140 PF04851 ResIII: Type III rest 99.7 5E-16 1.1E-20 152.0 15.6 152 196-363 3-184 (184)
141 KOG0386 Chromatin remodeling c 99.7 2.6E-16 5.6E-21 179.1 14.8 328 196-534 394-845 (1157)
142 cd00046 DEXDc DEAD-like helica 99.7 1.4E-15 3.1E-20 140.6 15.8 144 212-361 1-144 (144)
143 KOG0925 mRNA splicing factor A 99.7 2.8E-15 6E-20 159.2 19.0 326 173-525 24-387 (699)
144 KOG0953 Mitochondrial RNA heli 99.6 5.5E-15 1.2E-19 159.5 18.9 265 214-523 194-475 (700)
145 CHL00122 secA preprotein trans 99.6 2.1E-14 4.6E-19 165.7 23.5 127 196-333 76-209 (870)
146 KOG4439 RNA polymerase II tran 99.6 3.5E-14 7.6E-19 156.6 20.6 133 404-536 729-867 (901)
147 PF00271 Helicase_C: Helicase 99.6 3.8E-15 8.3E-20 125.5 9.0 73 441-513 6-78 (78)
148 KOG0951 RNA helicase BRR2, DEA 99.6 4.1E-14 8.9E-19 163.8 19.0 312 196-534 1143-1503(1674)
149 PRK11747 dinG ATP-dependent DN 99.6 5E-13 1.1E-17 157.1 28.5 117 419-538 534-689 (697)
150 COG1199 DinG Rad3-related DNA 99.6 7.3E-13 1.6E-17 156.0 29.2 118 420-540 480-634 (654)
151 KOG1002 Nucleotide excision re 99.6 5.2E-13 1.1E-17 142.1 24.4 123 417-541 636-763 (791)
152 COG0553 HepA Superfamily II DN 99.6 2.9E-13 6.4E-18 164.3 24.4 136 404-539 692-834 (866)
153 PRK12902 secA preprotein trans 99.5 1.3E-12 2.8E-17 150.8 24.4 127 196-333 85-218 (939)
154 TIGR00604 rad3 DNA repair heli 99.5 1.1E-11 2.3E-16 146.8 29.6 73 193-269 7-83 (705)
155 TIGR02562 cas3_yersinia CRISPR 99.4 5.5E-12 1.2E-16 147.7 21.9 311 195-514 407-881 (1110)
156 KOG0921 Dosage compensation co 99.4 1.5E-11 3.3E-16 138.8 23.4 306 200-522 382-771 (1282)
157 PRK14873 primosome assembly pr 99.4 6.4E-12 1.4E-16 145.6 20.2 135 218-368 167-310 (665)
158 smart00490 HELICc helicase sup 99.4 7.2E-13 1.6E-17 111.6 8.9 79 435-513 3-82 (82)
159 KOG1015 Transcription regulato 99.4 6.8E-12 1.5E-16 141.8 17.7 121 405-525 1127-1275(1567)
160 PF06862 DUF1253: Protein of u 99.4 1.7E-10 3.7E-15 126.2 26.3 239 296-534 131-424 (442)
161 PF02399 Herpes_ori_bp: Origin 99.4 6.2E-11 1.3E-15 135.9 22.1 289 214-525 52-388 (824)
162 PRK12901 secA preprotein trans 99.3 6.4E-11 1.4E-15 138.3 20.2 123 402-526 610-742 (1112)
163 PF00176 SNF2_N: SNF2 family N 99.3 8.1E-12 1.8E-16 132.2 10.9 157 200-362 1-173 (299)
164 COG0610 Type I site-specific r 99.2 8.7E-10 1.9E-14 133.3 20.9 295 212-523 274-651 (962)
165 PF07652 Flavi_DEAD: Flaviviru 99.1 4.1E-10 8.8E-15 104.3 10.3 135 211-365 4-140 (148)
166 smart00489 DEXDc3 DEAD-like he 99.1 8.6E-10 1.9E-14 116.6 14.0 73 196-269 8-84 (289)
167 smart00488 DEXDc2 DEAD-like he 99.1 8.6E-10 1.9E-14 116.6 14.0 73 196-269 8-84 (289)
168 KOG2340 Uncharacterized conser 98.9 1.8E-08 3.9E-13 109.1 16.1 340 194-534 214-677 (698)
169 KOG1016 Predicted DNA helicase 98.9 1.3E-07 2.8E-12 105.9 22.5 117 418-534 718-856 (1387)
170 COG0653 SecA Preprotein transl 98.8 6.4E-08 1.4E-12 112.2 16.6 318 196-525 78-545 (822)
171 PF07517 SecA_DEAD: SecA DEAD- 98.8 6E-08 1.3E-12 100.4 13.2 129 194-333 75-210 (266)
172 KOG1001 Helicase-like transcri 98.7 1.2E-07 2.5E-12 109.9 13.3 118 420-537 540-660 (674)
173 PF00397 WW: WW domain; Inter 98.7 9.7E-09 2.1E-13 70.3 2.0 31 23-53 1-31 (31)
174 PRK15483 type III restriction- 98.6 3.2E-07 6.9E-12 108.7 15.0 73 468-540 501-583 (986)
175 TIGR00596 rad1 DNA repair prot 98.5 2.5E-06 5.5E-11 101.0 18.7 65 297-361 8-72 (814)
176 COG3587 Restriction endonuclea 98.5 2.8E-06 6E-11 97.4 17.5 72 467-538 482-566 (985)
177 KOG0952 DNA/RNA helicase MER3/ 98.4 1.9E-07 4.1E-12 108.5 4.1 259 196-470 927-1207(1230)
178 PF13086 AAA_11: AAA domain; P 98.3 4E-06 8.6E-11 85.0 11.5 72 196-268 1-75 (236)
179 PF13872 AAA_34: P-loop contai 98.3 1.5E-05 3.2E-10 83.2 15.2 176 171-365 19-224 (303)
180 PF13604 AAA_30: AAA domain; P 98.3 3.7E-06 8E-11 84.0 10.2 123 196-360 1-130 (196)
181 PF13307 Helicase_C_2: Helicas 98.2 5.9E-06 1.3E-10 80.3 10.2 104 420-525 10-150 (167)
182 smart00456 WW Domain with 2 co 98.2 7.5E-07 1.6E-11 61.5 2.5 31 23-54 1-31 (32)
183 PF02562 PhoH: PhoH-like prote 98.2 2.5E-06 5.5E-11 85.0 7.1 149 195-360 3-155 (205)
184 PF12340 DUF3638: Protein of u 98.2 2.7E-05 5.8E-10 78.5 14.2 152 174-334 3-186 (229)
185 KOG1802 RNA helicase nonsense 98.1 4.5E-05 9.7E-10 85.3 13.7 75 190-270 404-478 (935)
186 TIGR00376 DNA helicase, putati 98.0 0.00059 1.3E-08 80.0 23.3 68 195-269 156-224 (637)
187 TIGR01447 recD exodeoxyribonuc 98.0 6.4E-05 1.4E-09 86.9 14.4 142 199-360 148-295 (586)
188 PRK10875 recD exonuclease V su 98.0 9.8E-05 2.1E-09 85.6 15.4 143 197-360 153-301 (615)
189 PF09848 DUF2075: Uncharacteri 97.9 3.4E-05 7.4E-10 84.2 10.1 108 213-347 3-117 (352)
190 KOG3259 Peptidyl-prolyl cis-tr 97.9 3.7E-06 8.1E-11 76.5 2.0 37 19-55 3-39 (163)
191 PRK10536 hypothetical protein; 97.9 8.8E-05 1.9E-09 76.2 12.0 142 193-358 56-210 (262)
192 cd00201 WW Two conserved trypt 97.9 1E-05 2.2E-10 55.2 2.5 30 24-54 1-30 (31)
193 COG3421 Uncharacterized protei 97.9 0.0001 2.2E-09 81.8 11.4 141 216-363 2-167 (812)
194 PRK13889 conjugal transfer rel 97.8 0.00092 2E-08 81.1 19.8 124 195-360 345-470 (988)
195 TIGR01448 recD_rel helicase, p 97.8 0.00025 5.5E-09 84.2 14.9 126 195-360 322-452 (720)
196 KOG1803 DNA helicase [Replicat 97.8 4.2E-05 9.1E-10 85.3 7.3 64 196-266 185-249 (649)
197 KOG1132 Helicase of the DEAD s 97.8 0.00011 2.3E-09 85.1 10.8 138 196-334 21-261 (945)
198 PRK13826 Dtr system oriT relax 97.5 0.0077 1.7E-07 73.8 22.2 136 182-360 368-505 (1102)
199 TIGR02768 TraA_Ti Ti-type conj 97.5 0.0018 3.9E-08 77.3 16.1 122 195-358 351-474 (744)
200 KOG0921 Dosage compensation co 97.4 0.00055 1.2E-08 79.1 10.0 44 195-238 405-448 (1282)
201 KOG1805 DNA replication helica 97.4 0.00067 1.5E-08 79.4 10.3 146 169-333 646-809 (1100)
202 PF13245 AAA_19: Part of AAA d 97.4 0.0008 1.7E-08 56.3 7.8 60 204-266 2-62 (76)
203 PRK04296 thymidine kinase; Pro 97.3 0.00063 1.4E-08 67.6 7.7 111 213-360 4-114 (190)
204 PF00580 UvrD-helicase: UvrD/R 97.2 0.0011 2.5E-08 70.3 9.0 123 197-330 1-125 (315)
205 KOG0298 DEAD box-containing he 97.2 0.0013 2.8E-08 78.9 9.9 153 211-368 374-557 (1394)
206 cd00009 AAA The AAA+ (ATPases 97.1 0.0057 1.2E-07 56.3 11.3 18 211-228 19-36 (151)
207 PF13401 AAA_22: AAA domain; P 97.1 0.002 4.4E-08 59.2 7.9 19 211-229 4-22 (131)
208 PRK08181 transposase; Validate 97.1 0.0059 1.3E-07 63.9 12.2 122 198-367 89-215 (269)
209 PRK06526 transposase; Provisio 97.0 0.0015 3.3E-08 67.9 7.5 113 206-366 93-206 (254)
210 KOG0383 Predicted helicase [Ge 97.0 0.00024 5.1E-09 82.1 1.1 76 405-480 616-695 (696)
211 KOG1131 RNA polymerase II tran 97.0 0.005 1.1E-07 67.7 10.9 74 193-269 13-90 (755)
212 TIGR02760 TraI_TIGR conjugativ 97.0 0.033 7.2E-07 73.0 20.3 235 196-467 429-685 (1960)
213 PRK07764 DNA polymerase III su 96.9 0.0049 1.1E-07 74.0 11.4 39 319-358 119-157 (824)
214 COG1875 NYN ribonuclease and A 96.9 0.004 8.6E-08 66.2 9.3 146 193-359 225-386 (436)
215 PRK14974 cell division protein 96.9 0.012 2.6E-07 63.5 13.3 130 213-373 142-276 (336)
216 PRK12723 flagellar biosynthesi 96.9 0.017 3.6E-07 63.6 14.5 130 212-372 175-309 (388)
217 smart00492 HELICc3 helicase su 96.9 0.0094 2E-07 56.2 10.7 74 451-524 30-137 (141)
218 PF13871 Helicase_C_4: Helicas 96.7 0.0049 1.1E-07 64.2 8.3 64 459-522 52-124 (278)
219 smart00491 HELICc2 helicase su 96.7 0.01 2.2E-07 56.0 9.7 69 456-524 32-138 (142)
220 smart00382 AAA ATPases associa 96.7 0.0035 7.5E-08 57.1 6.3 41 211-258 2-42 (148)
221 TIGR01075 uvrD DNA helicase II 96.6 0.012 2.7E-07 70.4 11.3 109 195-331 3-114 (715)
222 PRK11889 flhF flagellar biosyn 96.5 0.045 9.8E-07 59.8 14.2 128 212-372 242-374 (436)
223 PRK07952 DNA replication prote 96.5 0.053 1.2E-06 55.9 14.2 50 318-367 160-211 (244)
224 PRK11773 uvrD DNA-dependent he 96.5 0.014 3E-07 70.0 11.3 109 196-331 9-119 (721)
225 PF00448 SRP54: SRP54-type pro 96.5 0.019 4E-07 57.4 10.3 55 318-372 81-136 (196)
226 PRK05703 flhF flagellar biosyn 96.5 0.046 9.9E-07 61.1 14.3 127 211-372 221-354 (424)
227 PRK11634 ATP-dependent RNA hel 96.4 0.89 1.9E-05 53.6 25.0 72 247-328 246-321 (629)
228 PRK10919 ATP-dependent DNA hel 96.4 0.012 2.6E-07 69.8 9.6 110 196-331 2-113 (672)
229 cd01120 RecA-like_NTPases RecA 96.4 0.028 6.1E-07 53.1 10.5 38 214-258 2-39 (165)
230 PRK08084 DNA replication initi 96.4 0.017 3.7E-07 59.3 9.5 44 321-364 98-144 (235)
231 PRK11054 helD DNA helicase IV; 96.4 0.029 6.4E-07 66.3 12.5 71 195-270 195-265 (684)
232 PRK14722 flhF flagellar biosyn 96.3 0.018 3.9E-07 62.9 9.9 131 211-372 137-269 (374)
233 PHA02533 17 large terminase pr 96.3 0.038 8.2E-07 63.5 12.8 148 196-361 59-210 (534)
234 KOG3973 Uncharacterized conser 96.3 0.033 7.1E-07 58.2 10.9 29 183-211 6-34 (465)
235 PRK07003 DNA polymerase III su 96.3 0.0091 2E-07 69.9 7.7 40 319-359 118-157 (830)
236 COG1419 FlhF Flagellar GTP-bin 96.3 0.055 1.2E-06 59.0 13.2 131 211-372 203-335 (407)
237 PRK08116 hypothetical protein; 96.3 0.081 1.8E-06 55.5 14.2 49 318-367 176-227 (268)
238 PRK06921 hypothetical protein; 96.3 0.043 9.3E-07 57.5 12.0 45 211-262 117-161 (266)
239 KOG3973 Uncharacterized conser 96.3 0.023 5E-07 59.2 9.5 7 253-259 85-91 (465)
240 PF05970 PIF1: PIF1-like helic 96.3 0.018 3.9E-07 63.1 9.5 59 197-262 2-66 (364)
241 PRK08727 hypothetical protein; 96.2 0.018 3.9E-07 59.1 8.9 48 319-366 92-141 (233)
242 PRK05642 DNA replication initi 96.2 0.018 3.9E-07 59.1 8.7 44 320-363 97-142 (234)
243 KOG0738 AAA+-type ATPase [Post 96.2 0.11 2.4E-06 55.9 14.5 64 320-383 304-383 (491)
244 PRK06893 DNA replication initi 96.2 0.017 3.7E-07 59.0 8.4 44 319-362 90-135 (229)
245 PRK14712 conjugal transfer nic 96.1 0.046 9.9E-07 69.4 12.9 65 195-262 834-900 (1623)
246 TIGR01074 rep ATP-dependent DN 96.0 0.029 6.3E-07 66.6 10.5 109 197-331 2-112 (664)
247 PRK08769 DNA polymerase III su 96.0 0.044 9.5E-07 58.8 10.4 142 194-360 2-152 (319)
248 PF00308 Bac_DnaA: Bacterial d 96.0 0.07 1.5E-06 54.2 11.4 48 318-365 95-144 (219)
249 TIGR01073 pcrA ATP-dependent D 95.9 0.036 7.9E-07 66.5 10.7 110 195-331 3-114 (726)
250 PRK14086 dnaA chromosomal repl 95.9 0.029 6.4E-07 64.7 9.3 49 318-366 375-425 (617)
251 PRK13709 conjugal transfer nic 95.9 0.085 1.8E-06 67.8 14.1 127 195-360 966-1099(1747)
252 PRK14723 flhF flagellar biosyn 95.9 0.12 2.6E-06 61.2 14.3 126 213-372 187-317 (767)
253 PRK12422 chromosomal replicati 95.9 0.048 1E-06 61.3 10.6 50 319-368 201-252 (445)
254 PF05127 Helicase_RecD: Helica 95.8 0.0055 1.2E-07 59.8 2.7 123 215-361 1-123 (177)
255 cd01124 KaiC KaiC is a circadi 95.8 0.059 1.3E-06 52.7 10.1 49 214-270 2-50 (187)
256 COG1444 Predicted P-loop ATPas 95.8 0.12 2.6E-06 60.7 13.8 150 187-361 205-356 (758)
257 PRK05707 DNA polymerase III su 95.8 0.017 3.7E-07 62.3 6.5 35 196-230 3-41 (328)
258 PF14617 CMS1: U3-containing 9 95.8 0.016 3.5E-07 59.7 6.0 85 245-330 125-211 (252)
259 PRK11331 5-methylcytosine-spec 95.8 0.046 1E-06 60.8 9.8 33 197-229 180-212 (459)
260 PRK00771 signal recognition pa 95.8 0.11 2.3E-06 58.3 12.8 52 321-372 176-228 (437)
261 PRK09183 transposase/IS protei 95.7 0.058 1.2E-06 56.3 10.0 48 207-262 98-145 (259)
262 PRK06731 flhF flagellar biosyn 95.7 0.2 4.4E-06 52.5 14.0 127 212-372 76-208 (270)
263 PRK12377 putative replication 95.7 0.096 2.1E-06 54.2 11.2 109 211-366 101-211 (248)
264 PRK06835 DNA replication prote 95.7 0.096 2.1E-06 56.5 11.6 50 318-367 244-295 (329)
265 KOG0701 dsRNA-specific nucleas 95.7 0.011 2.4E-07 74.0 4.8 93 421-513 294-399 (1606)
266 PF03354 Terminase_1: Phage Te 95.6 0.058 1.2E-06 61.5 10.4 71 199-272 1-80 (477)
267 PRK12323 DNA polymerase III su 95.6 0.047 1E-06 63.2 9.4 42 318-360 122-163 (700)
268 PRK12727 flagellar biosynthesi 95.6 0.3 6.5E-06 55.5 15.3 128 211-372 350-481 (559)
269 PRK14964 DNA polymerase III su 95.5 0.062 1.3E-06 60.9 9.9 40 318-358 114-153 (491)
270 TIGR03420 DnaA_homol_Hda DnaA 95.5 0.072 1.6E-06 53.9 9.7 19 211-229 38-56 (226)
271 KOG0989 Replication factor C, 95.5 0.047 1E-06 57.0 8.1 44 317-361 126-169 (346)
272 PF05876 Terminase_GpA: Phage 95.4 0.027 5.8E-07 65.2 6.8 125 196-333 16-147 (557)
273 PF02456 Adeno_IVa2: Adenoviru 95.4 0.052 1.1E-06 56.7 7.9 39 214-257 90-128 (369)
274 PRK14958 DNA polymerase III su 95.4 0.039 8.4E-07 63.1 7.8 39 319-358 118-156 (509)
275 PF13177 DNA_pol3_delta2: DNA 95.4 0.038 8.2E-07 53.4 6.6 42 319-361 101-142 (162)
276 PHA03333 putative ATPase subun 95.4 0.43 9.3E-06 55.5 15.8 69 197-271 170-241 (752)
277 PRK14960 DNA polymerase III su 95.3 0.04 8.6E-07 63.9 7.6 39 319-358 117-155 (702)
278 PTZ00112 origin recognition co 95.3 0.17 3.6E-06 60.3 12.6 22 25-46 614-635 (1164)
279 PRK08691 DNA polymerase III su 95.3 0.051 1.1E-06 63.5 8.4 40 318-358 117-156 (709)
280 TIGR01547 phage_term_2 phage t 95.2 0.069 1.5E-06 59.3 9.0 135 213-363 3-142 (396)
281 PRK06645 DNA polymerase III su 95.2 0.099 2.2E-06 59.6 10.3 19 213-231 45-63 (507)
282 PRK14088 dnaA chromosomal repl 95.1 0.15 3.2E-06 57.5 11.3 50 320-369 194-245 (440)
283 PHA02544 44 clamp loader, smal 95.1 0.14 2.9E-06 54.9 10.7 40 320-359 100-139 (316)
284 TIGR02760 TraI_TIGR conjugativ 95.1 0.13 2.8E-06 67.6 12.3 62 195-262 1018-1084(1960)
285 COG1484 DnaC DNA replication p 95.1 0.051 1.1E-06 56.5 7.0 51 210-268 104-154 (254)
286 PRK07994 DNA polymerase III su 95.1 0.12 2.5E-06 60.6 10.6 39 319-358 118-156 (647)
287 TIGR02785 addA_Gpos recombinat 95.1 0.058 1.3E-06 68.3 8.8 123 197-331 2-126 (1232)
288 PRK09111 DNA polymerase III su 95.1 0.11 2.5E-06 60.4 10.5 40 318-358 130-169 (598)
289 PRK00149 dnaA chromosomal repl 95.1 0.28 6E-06 55.5 13.3 47 320-366 211-259 (450)
290 TIGR00362 DnaA chromosomal rep 95.0 0.17 3.6E-06 56.4 11.4 47 320-366 199-247 (405)
291 PRK14956 DNA polymerase III su 95.0 0.038 8.2E-07 62.1 6.1 17 214-230 43-59 (484)
292 PRK06964 DNA polymerase III su 94.9 0.15 3.2E-06 55.3 10.1 34 197-230 2-40 (342)
293 KOG1133 Helicase of the DEAD s 94.9 0.44 9.6E-06 54.8 14.0 126 420-558 630-803 (821)
294 PLN03025 replication factor C 94.9 0.2 4.4E-06 53.8 11.1 39 320-359 99-137 (319)
295 cd01122 GP4d_helicase GP4d_hel 94.9 0.051 1.1E-06 56.8 6.3 52 209-267 28-79 (271)
296 PRK05986 cob(I)alamin adenolsy 94.8 0.14 3E-06 50.6 8.7 145 210-370 21-167 (191)
297 PRK14087 dnaA chromosomal repl 94.8 0.15 3.3E-06 57.5 10.1 110 212-365 142-253 (450)
298 TIGR02640 gas_vesic_GvpN gas v 94.7 0.39 8.5E-06 50.1 12.5 28 202-229 12-39 (262)
299 PRK14959 DNA polymerase III su 94.7 0.097 2.1E-06 60.8 8.6 20 213-232 40-59 (624)
300 PRK14949 DNA polymerase III su 94.7 0.05 1.1E-06 65.0 6.4 38 319-357 118-155 (944)
301 PTZ00293 thymidine kinase; Pro 94.7 0.21 4.5E-06 50.3 9.9 37 212-255 5-41 (211)
302 PRK10917 ATP-dependent DNA hel 94.7 0.14 3E-06 61.0 10.2 84 409-492 300-389 (681)
303 PHA00729 NTP-binding motif con 94.7 0.4 8.7E-06 48.7 11.8 73 298-371 60-138 (226)
304 TIGR02928 orc1/cdc6 family rep 94.6 0.26 5.6E-06 53.8 11.5 24 212-236 41-64 (365)
305 TIGR02881 spore_V_K stage V sp 94.6 0.21 4.6E-06 52.1 10.2 19 212-230 43-61 (261)
306 PRK12726 flagellar biosynthesi 94.6 0.51 1.1E-05 51.6 13.2 126 212-370 207-337 (407)
307 PF05621 TniB: Bacterial TniB 94.6 0.11 2.5E-06 54.7 8.0 53 212-266 62-116 (302)
308 PRK14952 DNA polymerase III su 94.6 0.17 3.7E-06 58.7 10.2 39 319-358 117-155 (584)
309 cd00561 CobA_CobO_BtuR ATP:cor 94.6 0.23 4.9E-06 47.8 9.4 53 317-369 92-146 (159)
310 TIGR03877 thermo_KaiC_1 KaiC d 94.6 0.17 3.7E-06 52.0 9.3 52 211-270 21-72 (237)
311 PRK14873 primosome assembly pr 94.5 0.19 4.2E-06 59.2 10.7 90 403-493 171-264 (665)
312 TIGR00064 ftsY signal recognit 94.5 0.63 1.4E-05 48.9 13.3 56 318-373 152-214 (272)
313 PRK11823 DNA repair protein Ra 94.4 0.15 3.3E-06 57.4 9.2 52 211-270 80-131 (446)
314 PRK08699 DNA polymerase III su 94.4 0.23 4.9E-06 53.6 10.1 145 197-359 2-151 (325)
315 PRK14965 DNA polymerase III su 94.4 0.27 5.9E-06 57.2 11.5 40 318-358 117-156 (576)
316 COG0470 HolB ATPase involved i 94.4 0.19 4.1E-06 53.7 9.6 40 319-359 108-147 (325)
317 PRK08533 flagellar accessory p 94.4 0.3 6.4E-06 50.0 10.5 53 210-270 23-75 (230)
318 PF00004 AAA: ATPase family as 94.4 0.31 6.8E-06 44.2 9.7 16 321-336 59-74 (132)
319 PRK00411 cdc6 cell division co 94.4 0.19 4E-06 55.7 9.7 17 212-228 56-72 (394)
320 PRK12402 replication factor C 94.4 0.19 4.1E-06 54.1 9.6 40 319-359 124-163 (337)
321 TIGR03499 FlhF flagellar biosy 94.4 0.29 6.2E-06 51.8 10.6 18 213-230 196-213 (282)
322 PRK14951 DNA polymerase III su 94.3 0.17 3.8E-06 58.9 9.5 39 319-358 123-161 (618)
323 COG2256 MGS1 ATPase related to 94.3 0.22 4.7E-06 54.1 9.4 18 212-229 49-66 (436)
324 PRK06871 DNA polymerase III su 94.3 0.081 1.8E-06 56.9 6.3 137 197-360 3-146 (325)
325 PRK08903 DnaA regulatory inact 94.3 0.21 4.5E-06 50.8 9.0 42 320-362 90-132 (227)
326 PF13173 AAA_14: AAA domain 94.2 0.19 4.2E-06 46.2 7.9 38 320-360 61-98 (128)
327 COG1435 Tdk Thymidine kinase [ 94.2 0.43 9.3E-06 47.1 10.5 87 214-331 7-93 (201)
328 PRK10590 ATP-dependent RNA hel 94.2 1.4 2.9E-05 50.0 16.4 45 500-544 324-368 (456)
329 PF03969 AFG1_ATPase: AFG1-lik 94.2 0.36 7.9E-06 52.8 11.1 109 212-365 63-172 (362)
330 cd01121 Sms Sms (bacterial rad 94.2 0.21 4.5E-06 54.9 9.3 52 211-270 82-133 (372)
331 PF05496 RuvB_N: Holliday junc 94.2 0.12 2.6E-06 52.2 6.8 17 213-229 52-68 (233)
332 TIGR01425 SRP54_euk signal rec 94.1 0.39 8.5E-06 53.5 11.3 54 319-372 181-235 (429)
333 COG3973 Superfamily I DNA and 94.1 0.46 1E-05 54.0 11.7 92 179-271 187-285 (747)
334 cd03115 SRP The signal recogni 94.1 0.81 1.8E-05 44.3 12.4 54 319-372 81-135 (173)
335 PRK07993 DNA polymerase III su 94.1 0.15 3.3E-06 55.2 7.9 139 196-360 2-147 (334)
336 TIGR00708 cobA cob(I)alamin ad 94.0 0.42 9E-06 46.6 10.0 53 318-370 95-149 (173)
337 PRK05580 primosome assembly pr 94.0 0.27 5.9E-06 58.5 10.5 77 417-494 188-266 (679)
338 COG1474 CDC6 Cdc6-related prot 94.0 0.63 1.4E-05 51.0 12.5 26 212-238 43-68 (366)
339 COG3972 Superfamily I DNA and 94.0 0.27 5.8E-06 54.5 9.4 133 194-332 160-307 (660)
340 PRK14961 DNA polymerase III su 94.0 0.068 1.5E-06 58.6 5.1 39 319-358 118-156 (363)
341 PRK13342 recombination factor 94.0 0.31 6.7E-06 54.5 10.3 17 213-229 38-54 (413)
342 TIGR00595 priA primosomal prot 94.0 0.28 6.1E-06 56.2 10.2 77 417-494 23-101 (505)
343 KOG0739 AAA+-type ATPase [Post 94.0 0.53 1.2E-05 49.1 11.0 152 172-379 128-296 (439)
344 PHA03368 DNA packaging termina 94.0 0.35 7.6E-06 56.0 10.7 132 211-361 254-390 (738)
345 TIGR03881 KaiC_arch_4 KaiC dom 93.9 0.43 9.3E-06 48.5 10.5 52 211-270 20-71 (229)
346 PF02572 CobA_CobO_BtuR: ATP:c 93.9 0.93 2E-05 44.1 12.2 138 214-369 6-147 (172)
347 TIGR00643 recG ATP-dependent D 93.9 0.24 5.2E-06 58.5 9.7 84 409-492 274-363 (630)
348 PRK06090 DNA polymerase III su 93.8 0.28 6.2E-06 52.6 9.1 138 196-360 3-147 (319)
349 PRK11034 clpA ATP-dependent Cl 93.7 0.38 8.3E-06 57.6 11.1 45 321-365 279-327 (758)
350 PRK14969 DNA polymerase III su 93.7 0.32 7E-06 56.0 10.2 40 318-358 117-156 (527)
351 KOG0298 DEAD box-containing he 93.7 0.07 1.5E-06 64.7 4.8 110 410-522 1212-1321(1394)
352 PRK14950 DNA polymerase III su 93.7 0.32 6.9E-06 56.9 10.1 41 318-360 118-158 (585)
353 PF06745 KaiC: KaiC; InterPro 93.5 0.44 9.5E-06 48.4 9.7 130 211-360 19-159 (226)
354 PRK12724 flagellar biosynthesi 93.4 0.92 2E-05 50.3 12.5 54 319-372 298-356 (432)
355 PRK09112 DNA polymerase III su 93.4 0.59 1.3E-05 51.0 11.0 41 319-360 140-180 (351)
356 COG2805 PilT Tfp pilus assembl 93.3 0.27 5.9E-06 51.5 7.7 64 156-239 88-152 (353)
357 PRK14957 DNA polymerase III su 93.3 0.24 5.2E-06 57.0 8.2 40 318-358 117-156 (546)
358 PRK13341 recombination factor 93.3 0.47 1E-05 56.6 10.9 40 320-364 109-148 (725)
359 PRK08939 primosomal protein Dn 93.3 0.66 1.4E-05 49.6 11.0 50 318-367 215-267 (306)
360 PRK05563 DNA polymerase III su 93.2 0.35 7.7E-06 56.1 9.4 43 318-362 117-159 (559)
361 PRK07471 DNA polymerase III su 93.2 0.67 1.4E-05 50.9 11.0 43 318-361 139-181 (365)
362 COG0593 DnaA ATPase involved i 93.1 0.37 8E-06 53.2 8.8 49 320-368 175-225 (408)
363 TIGR02639 ClpA ATP-dependent C 93.1 0.68 1.5E-05 55.7 11.9 18 212-229 204-221 (731)
364 KOG2028 ATPase related to the 93.1 0.22 4.8E-06 53.2 6.7 16 213-228 164-179 (554)
365 COG2109 BtuR ATP:corrinoid ade 93.0 0.96 2.1E-05 44.3 10.5 54 318-371 120-175 (198)
366 PRK06067 flagellar accessory p 93.0 1 2.2E-05 46.0 11.6 52 211-270 25-76 (234)
367 PRK14721 flhF flagellar biosyn 93.0 0.68 1.5E-05 51.5 10.8 131 211-372 191-323 (420)
368 KOG0742 AAA+-type ATPase [Post 92.9 0.15 3.2E-06 55.2 5.2 16 212-227 385-400 (630)
369 PRK14954 DNA polymerase III su 92.9 0.25 5.4E-06 57.8 7.6 40 318-358 125-164 (620)
370 COG4626 Phage terminase-like p 92.9 0.52 1.1E-05 53.4 9.7 146 195-359 60-223 (546)
371 PRK13833 conjugal transfer pro 92.8 0.36 7.7E-06 51.9 8.1 58 197-259 129-187 (323)
372 PF06733 DEAD_2: DEAD_2; Inte 92.8 0.071 1.5E-06 52.0 2.5 44 291-334 114-159 (174)
373 cd00984 DnaB_C DnaB helicase C 92.8 0.26 5.7E-06 50.4 6.8 47 210-262 12-61 (242)
374 PRK05973 replicative DNA helic 92.7 0.53 1.1E-05 48.3 8.8 56 207-270 60-115 (237)
375 KOG0991 Replication factor C, 92.7 0.15 3.3E-06 51.3 4.6 46 314-360 105-152 (333)
376 TIGR00580 mfd transcription-re 92.6 0.42 9.2E-06 58.5 9.3 81 412-492 493-579 (926)
377 TIGR03015 pepcterm_ATPase puta 92.6 0.69 1.5E-05 48.1 9.9 33 196-228 23-60 (269)
378 PRK00440 rfc replication facto 92.6 1.3 2.8E-05 47.2 12.1 39 320-359 102-140 (319)
379 CHL00181 cbbX CbbX; Provisiona 92.5 1.2 2.6E-05 47.2 11.5 20 212-231 60-79 (287)
380 PRK14948 DNA polymerase III su 92.5 0.44 9.5E-06 55.9 8.9 38 319-357 120-157 (620)
381 PRK04328 hypothetical protein; 92.5 0.75 1.6E-05 47.6 9.8 52 211-270 23-74 (249)
382 PRK14962 DNA polymerase III su 92.5 0.52 1.1E-05 53.5 9.2 17 214-230 39-55 (472)
383 PRK04195 replication factor C 92.4 0.9 1.9E-05 51.9 11.2 19 211-229 39-57 (482)
384 COG1485 Predicted ATPase [Gene 92.4 1.4 3E-05 47.4 11.5 109 212-365 66-175 (367)
385 PRK07940 DNA polymerase III su 92.3 0.89 1.9E-05 50.4 10.5 41 319-360 116-156 (394)
386 PF05729 NACHT: NACHT domain 92.2 0.89 1.9E-05 42.9 9.4 38 323-360 84-129 (166)
387 PRK05896 DNA polymerase III su 92.2 0.5 1.1E-05 54.7 8.8 39 319-358 118-156 (605)
388 PF03237 Terminase_6: Terminas 92.2 2 4.3E-05 46.3 13.3 149 215-376 1-154 (384)
389 TIGR03346 chaperone_ClpB ATP-d 92.2 1.3 2.8E-05 54.3 12.8 18 212-229 195-212 (852)
390 KOG1891 Proline binding protei 92.1 0.11 2.4E-06 51.2 2.8 35 21-56 127-161 (271)
391 PRK14963 DNA polymerase III su 92.0 0.47 1E-05 54.3 8.1 17 214-230 39-55 (504)
392 PRK10416 signal recognition pa 92.0 6.4 0.00014 42.4 16.4 55 318-372 194-255 (318)
393 PRK14955 DNA polymerase III su 91.8 0.7 1.5E-05 51.3 9.2 40 318-358 125-164 (397)
394 KOG1513 Nuclear helicase MOP-3 91.8 0.27 5.8E-06 57.0 5.8 78 462-539 851-940 (1300)
395 PRK13894 conjugal transfer ATP 91.7 0.5 1.1E-05 50.9 7.6 64 188-258 126-190 (319)
396 PF01443 Viral_helicase1: Vira 91.7 0.16 3.4E-06 51.6 3.7 14 214-227 1-14 (234)
397 CHL00095 clpC Clp protease ATP 91.7 0.66 1.4E-05 56.5 9.5 19 212-230 201-219 (821)
398 PRK06995 flhF flagellar biosyn 91.7 0.41 9E-06 54.1 7.2 20 213-232 258-277 (484)
399 TIGR00678 holB DNA polymerase 91.5 0.44 9.6E-06 46.9 6.5 40 318-358 94-133 (188)
400 TIGR00959 ffh signal recogniti 91.4 2.9 6.2E-05 46.9 13.4 55 319-373 181-236 (428)
401 KOG2036 Predicted P-loop ATPas 91.4 2.9 6.4E-05 48.3 13.2 134 198-362 255-412 (1011)
402 TIGR02782 TrbB_P P-type conjug 91.3 0.79 1.7E-05 48.9 8.5 58 197-259 117-175 (299)
403 COG4962 CpaF Flp pilus assembl 91.2 0.71 1.5E-05 49.4 7.9 61 193-261 154-215 (355)
404 PRK10867 signal recognition pa 91.2 3.3 7.2E-05 46.4 13.7 55 319-373 182-237 (433)
405 PRK10865 protein disaggregatio 91.2 1.4 2.9E-05 54.0 11.5 18 212-229 200-217 (857)
406 TIGR03878 thermo_KaiC_2 KaiC d 91.2 1.3 2.8E-05 46.2 9.9 37 211-254 36-72 (259)
407 PF07728 AAA_5: AAA domain (dy 91.2 0.092 2E-06 48.9 1.2 16 213-228 1-16 (139)
408 KOG1513 Nuclear helicase MOP-3 91.1 0.33 7.2E-06 56.3 5.6 155 195-360 263-453 (1300)
409 TIGR02880 cbbX_cfxQ probable R 90.8 1.2 2.6E-05 47.1 9.3 18 212-229 59-76 (284)
410 TIGR03600 phage_DnaB phage rep 90.6 2.5 5.5E-05 47.3 12.3 36 212-253 195-230 (421)
411 PRK10689 transcription-repair 90.6 0.99 2.1E-05 56.7 9.7 76 417-492 647-728 (1147)
412 cd03239 ABC_SMC_head The struc 90.6 0.59 1.3E-05 45.8 6.3 42 319-360 115-157 (178)
413 PHA00012 I assembly protein 90.5 3.6 7.8E-05 44.0 12.2 56 318-374 79-140 (361)
414 TIGR03345 VI_ClpV1 type VI sec 90.4 2.3 5.1E-05 51.9 12.5 18 212-229 209-226 (852)
415 PRK06904 replicative DNA helic 90.4 2.3 4.9E-05 48.4 11.7 113 213-334 223-348 (472)
416 PRK07399 DNA polymerase III su 90.4 1.2 2.5E-05 47.9 8.8 55 303-360 108-162 (314)
417 PRK07414 cob(I)yrinic acid a,c 90.3 1.5 3.2E-05 42.9 8.6 52 318-369 113-166 (178)
418 TIGR00635 ruvB Holliday juncti 90.2 0.56 1.2E-05 49.9 6.3 17 212-228 31-47 (305)
419 PRK14971 DNA polymerase III su 90.2 1 2.2E-05 52.9 8.8 41 318-360 119-159 (614)
420 KOG1133 Helicase of the DEAD s 90.0 0.43 9.4E-06 54.9 5.2 43 196-238 15-61 (821)
421 PRK08451 DNA polymerase III su 89.9 1.1 2.4E-05 51.4 8.6 40 318-358 115-154 (535)
422 COG2812 DnaX DNA polymerase II 89.9 0.34 7.4E-06 55.0 4.4 40 318-358 117-156 (515)
423 COG1198 PriA Primosomal protei 89.9 0.73 1.6E-05 54.6 7.3 96 396-492 221-319 (730)
424 PF01695 IstB_IS21: IstB-like 89.7 0.73 1.6E-05 45.2 6.1 49 206-262 42-90 (178)
425 PRK07133 DNA polymerase III su 89.6 0.89 1.9E-05 53.8 7.7 39 319-358 117-155 (725)
426 PF03796 DnaB_C: DnaB-like hel 89.5 1.3 2.8E-05 46.1 8.2 109 213-334 21-144 (259)
427 TIGR00416 sms DNA repair prote 89.5 1.1 2.5E-05 50.5 8.3 52 211-270 94-145 (454)
428 KOG0740 AAA+-type ATPase [Post 89.5 0.96 2.1E-05 50.1 7.4 53 319-371 244-309 (428)
429 KOG0745 Putative ATP-dependent 89.5 0.47 1E-05 52.0 4.8 17 212-228 227-243 (564)
430 PRK13900 type IV secretion sys 89.4 0.95 2.1E-05 49.0 7.3 46 206-259 155-200 (332)
431 PRK09354 recA recombinase A; P 89.3 1.4 3E-05 47.9 8.3 43 211-260 60-102 (349)
432 PRK06305 DNA polymerase III su 89.3 1.3 2.9E-05 49.9 8.6 39 319-358 120-158 (451)
433 KOG0741 AAA+-type ATPase [Post 89.2 2.2 4.8E-05 48.0 9.8 68 179-255 494-573 (744)
434 PRK13851 type IV secretion sys 89.2 0.52 1.1E-05 51.2 5.1 47 205-259 156-202 (344)
435 PRK06647 DNA polymerase III su 89.2 0.81 1.7E-05 53.1 6.9 41 318-360 117-157 (563)
436 TIGR03880 KaiC_arch_3 KaiC dom 89.2 1.9 4.2E-05 43.6 9.0 52 211-270 16-67 (224)
437 PF00265 TK: Thymidine kinase; 89.1 1.6 3.5E-05 42.7 8.0 35 214-255 4-38 (176)
438 COG0210 UvrD Superfamily I DNA 89.0 1.7 3.6E-05 51.6 9.7 109 196-330 2-112 (655)
439 TIGR03689 pup_AAA proteasome A 89.0 1.9 4.1E-05 49.3 9.5 18 211-228 216-233 (512)
440 PHA03372 DNA packaging termina 88.9 3.8 8.2E-05 47.2 11.6 124 212-360 203-336 (668)
441 TIGR01650 PD_CobS cobaltochela 88.9 3 6.5E-05 44.8 10.4 24 205-228 58-81 (327)
442 COG2909 MalT ATP-dependent tra 88.8 0.75 1.6E-05 54.4 6.2 44 319-362 128-171 (894)
443 PF05707 Zot: Zonular occluden 88.6 0.21 4.4E-06 49.7 1.3 18 214-231 3-20 (193)
444 cd01125 repA Hexameric Replica 88.5 5.1 0.00011 41.0 11.6 52 214-265 4-63 (239)
445 PRK08058 DNA polymerase III su 88.5 0.8 1.7E-05 49.5 5.9 41 318-359 108-148 (329)
446 cd00983 recA RecA is a bacter 88.3 1.4 3E-05 47.5 7.5 43 211-260 55-97 (325)
447 PRK04841 transcriptional regul 88.3 4.7 0.0001 49.6 13.3 44 319-362 120-163 (903)
448 PRK14953 DNA polymerase III su 88.3 0.93 2E-05 51.7 6.5 39 318-357 117-155 (486)
449 TIGR02012 tigrfam_recA protein 88.1 1.2 2.6E-05 47.8 6.9 41 212-259 56-96 (321)
450 TIGR02655 circ_KaiC circadian 87.6 2.5 5.3E-05 48.4 9.5 61 202-270 249-314 (484)
451 TIGR02524 dot_icm_DotB Dot/Icm 87.5 1.1 2.4E-05 49.1 6.3 26 210-236 133-158 (358)
452 COG0513 SrmB Superfamily II DN 87.5 8.2 0.00018 44.4 13.7 67 422-492 102-180 (513)
453 TIGR02237 recomb_radB DNA repa 87.5 1 2.2E-05 45.0 5.6 38 211-255 12-49 (209)
454 COG2255 RuvB Holliday junction 87.4 1.6 3.6E-05 45.5 7.0 18 212-229 53-70 (332)
455 PF01637 Arch_ATPase: Archaeal 87.3 1.5 3.2E-05 43.9 6.8 56 302-361 104-165 (234)
456 COG1200 RecG RecG-like helicas 87.3 3.2 7E-05 48.2 10.0 87 406-492 298-390 (677)
457 COG0552 FtsY Signal recognitio 87.3 7 0.00015 41.9 11.8 128 214-372 142-280 (340)
458 TIGR02525 plasmid_TraJ plasmid 87.3 1.6 3.5E-05 47.9 7.4 63 173-258 129-191 (372)
459 TIGR00767 rho transcription te 87.2 2.3 5E-05 46.9 8.4 18 210-227 167-184 (415)
460 cd01394 radB RadB. The archaea 87.0 3.8 8.2E-05 41.2 9.6 43 204-253 7-54 (218)
461 PRK08506 replicative DNA helic 87.0 1.9 4E-05 49.1 8.0 111 212-333 193-315 (472)
462 TIGR02397 dnaX_nterm DNA polym 87.0 1.1 2.5E-05 48.5 6.1 17 213-229 38-54 (355)
463 KOG0741 AAA+-type ATPase [Post 86.8 2.4 5.1E-05 47.8 8.2 54 318-376 322-389 (744)
464 PF02534 T4SS-DNA_transf: Type 86.8 0.46 1E-05 53.9 3.0 50 212-270 45-94 (469)
465 KOG0737 AAA+-type ATPase [Post 86.8 0.79 1.7E-05 49.3 4.4 52 174-228 89-144 (386)
466 cd01126 TraG_VirD4 The TraG/Tr 86.8 0.3 6.6E-06 53.9 1.5 48 213-269 1-48 (384)
467 TIGR01243 CDC48 AAA family ATP 86.8 1.7 3.6E-05 52.4 7.8 17 212-228 488-504 (733)
468 PLN03187 meiotic recombination 86.7 3 6.6E-05 45.3 9.0 27 170-196 28-54 (344)
469 TIGR02688 conserved hypothetic 86.6 3.9 8.4E-05 45.5 9.7 24 206-229 204-227 (449)
470 KOG0733 Nuclear AAA ATPase (VC 86.4 3.6 7.8E-05 47.2 9.4 53 172-227 506-561 (802)
471 TIGR00763 lon ATP-dependent pr 86.4 7.2 0.00016 47.3 13.0 18 212-229 348-365 (775)
472 PRK03992 proteasome-activating 86.3 2.1 4.7E-05 47.4 7.8 17 212-228 166-182 (389)
473 PRK09376 rho transcription ter 86.3 3.1 6.8E-05 45.8 8.8 18 210-227 168-185 (416)
474 CHL00176 ftsH cell division pr 86.1 4 8.7E-05 48.1 10.3 17 212-228 217-233 (638)
475 COG1110 Reverse gyrase [DNA re 86.1 2.1 4.6E-05 51.6 7.9 60 418-477 124-190 (1187)
476 PRK13764 ATPase; Provisional 86.1 1.5 3.3E-05 51.0 6.7 42 210-258 256-297 (602)
477 COG1132 MdlB ABC-type multidru 86.0 1.1 2.4E-05 52.2 5.7 40 318-357 481-520 (567)
478 PTZ00454 26S protease regulato 85.9 2.9 6.3E-05 46.4 8.6 54 172-228 140-196 (398)
479 TIGR01420 pilT_fam pilus retra 85.9 1.9 4.2E-05 46.8 7.2 43 211-259 122-164 (343)
480 KOG2543 Origin recognition com 85.8 4.1 8.8E-05 44.3 9.1 46 319-364 114-161 (438)
481 KOG0344 ATP-dependent RNA heli 85.7 7.1 0.00015 44.5 11.3 98 220-331 366-467 (593)
482 KOG2170 ATPase of the AAA+ sup 85.7 31 0.00067 36.6 15.2 53 322-375 180-239 (344)
483 PRK08760 replicative DNA helic 85.7 4.9 0.00011 45.8 10.4 110 213-333 231-352 (476)
484 TIGR00602 rad24 checkpoint pro 85.6 4.1 8.8E-05 47.9 9.9 27 319-346 194-220 (637)
485 TIGR01241 FtsH_fam ATP-depende 85.3 3.5 7.5E-05 47.3 9.2 55 171-228 49-105 (495)
486 COG1222 RPT1 ATP-dependent 26S 85.3 2.7 5.9E-05 45.2 7.5 53 172-228 146-202 (406)
487 PRK13897 type IV secretion sys 85.2 0.58 1.3E-05 54.6 2.8 50 212-270 159-208 (606)
488 KOG0732 AAA+-type ATPase conta 85.2 1.2 2.5E-05 54.4 5.3 56 172-228 260-316 (1080)
489 TIGR01243 CDC48 AAA family ATP 85.1 3 6.5E-05 50.2 8.9 17 211-227 212-228 (733)
490 COG3267 ExeA Type II secretory 85.0 4.2 9E-05 41.9 8.4 24 206-229 45-69 (269)
491 TIGR02868 CydC thiol reductant 84.9 1.9 4.2E-05 49.7 7.0 41 318-358 486-526 (529)
492 PRK09361 radB DNA repair and r 84.9 4.4 9.4E-05 41.0 8.8 45 204-255 11-60 (225)
493 TIGR02858 spore_III_AA stage I 84.7 4.4 9.4E-05 42.6 8.8 15 212-226 112-126 (270)
494 PRK07413 hypothetical protein; 84.7 14 0.00031 40.5 12.9 55 316-370 121-177 (382)
495 PHA00350 putative assembly pro 84.7 6.7 0.00015 43.4 10.5 17 214-230 4-20 (399)
496 PRK08006 replicative DNA helic 84.6 7.3 0.00016 44.3 11.2 112 213-333 226-349 (471)
497 COG2804 PulE Type II secretory 84.4 1.6 3.5E-05 49.1 5.6 41 197-238 242-284 (500)
498 cd03240 ABC_Rad50 The catalyti 84.4 7 0.00015 39.1 9.9 43 318-360 137-182 (204)
499 PRK08840 replicative DNA helic 84.4 6.2 0.00014 44.8 10.5 157 193-358 199-376 (464)
500 PRK10263 DNA translocase FtsK; 84.3 5.9 0.00013 49.6 10.7 148 208-387 1007-1212(1355)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-76 Score=639.41 Aligned_cols=382 Identities=59% Similarity=0.996 Sum_probs=362.9
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhh--ccCCCCCCCEEEEE
Q 005313 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKR--CRNDPRLGPTVLVL 252 (703)
Q Consensus 175 sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~--~~~~~~~g~~vLIl 252 (703)
.|.+++|++++.+.++..+|..|||||++.||.++.|+|+|.+|.||||||++|+||++.++.. .......+|++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 4556677788888888999999999999999999999999999999999999999999999986 33344558999999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 253 ~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
+||||||.|+.+++.++...+.++++|++|+.++..|++.+.++++|+|+||++|+++++.+.+.+.++.|+||||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHc-CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHH
Q 005313 333 LDMGFEPQIRKIVKEV-PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411 (703)
Q Consensus 333 l~~gf~~~i~~il~~l-~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 411 (703)
++|+|++++++|+..+ ++.+|+||+|||||.+++.++.+|+.+++.+.+...+++..+..+.|.++.+....|...|..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 9999999999999999 667799999999999999999999999999999988888999999999999999999999999
Q ss_pred HHHhcC--CCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCcc
Q 005313 412 ILRSQE--PGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR 488 (703)
Q Consensus 412 ll~~~~--~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~ 488 (703)
+|.... .+.|+||||+|++.|+.|+..|.+ .+++.+|||+.+|.+|+.+|+.|++|+++||||||+++||||||+|+
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~ 411 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD 411 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence 998874 567999999999999999999997 58999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHHHHHHHcCC
Q 005313 489 VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGG 556 (703)
Q Consensus 489 ~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L~~la~r~~ 556 (703)
+|||||+|.++++|+||+|||||+++.|.+++|++..+...+..+++++++..|.++..|.+++...+
T Consensus 412 lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~ 479 (519)
T KOG0331|consen 412 LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSG 479 (519)
T ss_pred EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999987654
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.7e-67 Score=595.54 Aligned_cols=407 Identities=52% Similarity=0.875 Sum_probs=371.1
Q ss_pred CCCCHHHHHhcCCeEE-cCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHH
Q 005313 149 ISISSEAYRRRHEVTV-SGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 149 ~~~~~~~~~~~~~i~~-~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla 227 (703)
.....+++++++++++ .+..+|.|+.+|++++|++.++++|.+.||.+||++|.++||.+++++|+|++||||||||++
T Consensus 104 ~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTla 183 (545)
T PTZ00110 104 SSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLA 183 (545)
T ss_pred CHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHH
Confidence 3344566888888886 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc-CCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHH
Q 005313 228 YLLPGFIHLKRCR-NDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGR 306 (703)
Q Consensus 228 ~llp~l~~l~~~~-~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~ 306 (703)
|++|++.++.... .....++.+|||+||+|||.|+.++++++.....+.+.+++|+.....+...+..+++|||+||++
T Consensus 184 ylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgr 263 (545)
T PTZ00110 184 FLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGR 263 (545)
T ss_pred HHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 9999998876532 122346899999999999999999999999989999999999998888888888999999999999
Q ss_pred HHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhc-Cceecccccch
Q 005313 307 LNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVD 385 (703)
Q Consensus 307 L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~-~~~~i~i~~~~ 385 (703)
|.+++......+.++++|||||||+|++++|..++.+|+..+++.+|+|++|||||+++..++..++. +++.+.+....
T Consensus 264 L~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~ 343 (545)
T PTZ00110 264 LIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD 343 (545)
T ss_pred HHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 99999988888999999999999999999999999999999999999999999999999999998886 46766665433
Q ss_pred hhhccccceEEEEEeccchhHHHHHHHHHhcC-CCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHH
Q 005313 386 ELAANKAITQHIEVLAPMDKHRRLEQILRSQE-PGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQ 463 (703)
Q Consensus 386 ~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~-~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~ 463 (703)
......+.+.+..+...+|...|..++.... ...++||||++++.|+.+++.|. ..+.+..+|+++++++|+.++++
T Consensus 344 -l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~ 422 (545)
T PTZ00110 344 -LTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNE 422 (545)
T ss_pred -cccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHH
Confidence 3444567788888888888888888888764 66799999999999999999997 57889999999999999999999
Q ss_pred HhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCc
Q 005313 464 FRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQ 543 (703)
Q Consensus 464 F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~ 543 (703)
|++|+++|||||+++++|||||+|++||+||+|.++++|+||+||+||+|+.|.|++|+++.+...+.+|+++|++..+.
T Consensus 423 F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~ 502 (545)
T PTZ00110 423 FKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQP 502 (545)
T ss_pred HhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHcCC
Q 005313 544 VPRELRDMASRGG 556 (703)
Q Consensus 544 v~~~L~~la~r~~ 556 (703)
+|++|.+++....
T Consensus 503 vp~~l~~~~~~~~ 515 (545)
T PTZ00110 503 VPPELEKLSNERS 515 (545)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999987543
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-68 Score=549.39 Aligned_cols=408 Identities=45% Similarity=0.784 Sum_probs=372.7
Q ss_pred CCCCCCHHHHHhcCCe-EEc------CCCCCCCCCCCcC-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEe
Q 005313 147 GGISISSEAYRRRHEV-TVS------GDEVPPPFMSFDA-TGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIA 218 (703)
Q Consensus 147 ~~~~~~~~~~~~~~~i-~~~------~~~~p~p~~sf~~-~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~A 218 (703)
+.+.....+|++.+-. +.. ...+|+|.-+|++ +...+++++++.+.||.+|+|||.||||.+|+|.|++.+|
T Consensus 185 ~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVA 264 (629)
T KOG0336|consen 185 NLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVA 264 (629)
T ss_pred cCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEE
Confidence 3334455566665443 322 2457889999987 5778999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHhhccC--CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCC
Q 005313 219 KTGSGKTLGYLLPGFIHLKRCRN--DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRG 296 (703)
Q Consensus 219 pTGsGKTla~llp~l~~l~~~~~--~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g 296 (703)
.||+|||++||+|.+.++..... ....++.+|+++||+||+.|+.-++.++. ..+++.+|++|+....+++.++.++
T Consensus 265 QTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrg 343 (629)
T KOG0336|consen 265 QTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRG 343 (629)
T ss_pred ecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcC
Confidence 99999999999999988765432 23457899999999999999999988874 3578899999999999999999999
Q ss_pred CcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCc
Q 005313 297 VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNP 376 (703)
Q Consensus 297 ~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~ 376 (703)
.+|+|+||++|+++...+.+++..+.||||||||+||||+|++++.+|+-.+.+++|++|.|||||..+..++..|+++|
T Consensus 344 veiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep 423 (629)
T KOG0336|consen 344 VEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEP 423 (629)
T ss_pred ceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHH
Q 005313 377 VQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQS 455 (703)
Q Consensus 377 ~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~ 455 (703)
+.+.++..+ +.....++|.+.+..+.+|...+..+++......|+||||..+..|+.|...|. +.+.+..|||+..|.
T Consensus 424 ~~v~vGsLd-L~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~ 502 (629)
T KOG0336|consen 424 MIVYVGSLD-LVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQS 502 (629)
T ss_pred eEEEecccc-eeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhh
Confidence 999988765 556677889998888999999999999999999999999999999999987776 678899999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHH
Q 005313 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIK 535 (703)
Q Consensus 456 eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~ 535 (703)
+|+..++.|++|+++||||||++++|||+++++||+|||+|.++++|+||+||+||+|+.|.+++|+..+|+..+..|++
T Consensus 503 DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 503 DREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred hHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcccHHHHHHHHcCC
Q 005313 536 LLEGAKQQVPRELRDMASRGG 556 (703)
Q Consensus 536 ~l~~~~~~v~~~L~~la~r~~ 556 (703)
+|+.++|++|++|..||.+-.
T Consensus 583 ILe~aeQevPdeL~~mAeryk 603 (629)
T KOG0336|consen 583 ILERAEQEVPDELVRMAERYK 603 (629)
T ss_pred HHHHhhhhCcHHHHHHHHHHH
Confidence 999999999999999998754
No 4
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-67 Score=548.68 Aligned_cols=411 Identities=45% Similarity=0.740 Sum_probs=383.3
Q ss_pred CCCCCCCCCHHHHHhcCCeEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCh
Q 005313 144 SSVGGISISSEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSG 223 (703)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsG 223 (703)
+-.+...++...++....+.+.+..+|.|+.+|+..+|++.|+.++.+.-|.+|||+|.+++|.++.+++++-+|.||||
T Consensus 193 sI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSg 272 (731)
T KOG0339|consen 193 SIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSG 272 (731)
T ss_pred hhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCc
Confidence 44455567778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC-CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEE
Q 005313 224 KTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVA 302 (703)
Q Consensus 224 KTla~llp~l~~l~~~~~-~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~ 302 (703)
||.+|+.|++.++..... .++.+|..||||||||||.|++.++++|++..+++++++|||..+.+|...|..++.||||
T Consensus 273 ktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVa 352 (731)
T KOG0339|consen 273 KTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVA 352 (731)
T ss_pred chhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEe
Confidence 999999999999877554 3477899999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccc
Q 005313 303 TPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382 (703)
Q Consensus 303 Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~ 382 (703)
||++|+++++.+.+++.+++|||||||++|.++||+++++.|...+.+++|+|+||||++..++.+++.+|.+|+.+..+
T Consensus 353 TPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg 432 (731)
T KOG0339|consen 353 TPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG 432 (731)
T ss_pred chHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred cchhhhccccceEEEEEecc-chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHH
Q 005313 383 NVDELAANKAITQHIEVLAP-MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYV 460 (703)
Q Consensus 383 ~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~v 460 (703)
... ..+..|+|.+.++.. ..|+..|..-|.......++|||+..+..++.++..|+ +.|.+..+|+++.|.+|.++
T Consensus 433 ~vg--ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ 510 (731)
T KOG0339|consen 433 EVG--EANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEV 510 (731)
T ss_pred ehh--ccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHH
Confidence 544 456678888887765 45666666666555666799999999999999999998 78999999999999999999
Q ss_pred HHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhc
Q 005313 461 LNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGA 540 (703)
Q Consensus 461 l~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~ 540 (703)
|.+|+++.++|||+||++++|+||+.+.+|||||+-.+++.|.|||||+||+|.+|++|+|+++.|..++-.|++.|+.+
T Consensus 511 ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~a 590 (731)
T KOG0339|consen 511 LSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGA 590 (731)
T ss_pred HHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHHcCC
Q 005313 541 KQQVPRELRDMASRGG 556 (703)
Q Consensus 541 ~~~v~~~L~~la~r~~ 556 (703)
.|.||.+|.+|++...
T Consensus 591 gQnVP~~l~dlamk~s 606 (731)
T KOG0339|consen 591 GQNVPDELMDLAMKSS 606 (731)
T ss_pred cccCChHHHHHHhhhh
Confidence 9999999999997543
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.2e-66 Score=549.61 Aligned_cols=409 Identities=42% Similarity=0.705 Sum_probs=373.7
Q ss_pred CCCCCCCCCCCHHH---HHhcCCeEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEe
Q 005313 142 HGSSVGGISISSEA---YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIA 218 (703)
Q Consensus 142 ~~~~~~~~~~~~~~---~~~~~~i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~A 218 (703)
|++.-...++.+.+ |+..+.+.+++..+|.|+.+|++.+||.++++.+.+.+|..|+|||.++||..++.+|+|.+|
T Consensus 210 hW~~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igva 289 (673)
T KOG0333|consen 210 HWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVA 289 (673)
T ss_pred chhhhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEE
Confidence 44443444444444 567788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHhhccC-----CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhh
Q 005313 219 KTGSGKTLGYLLPGFIHLKRCRN-----DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293 (703)
Q Consensus 219 pTGsGKTla~llp~l~~l~~~~~-----~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l 293 (703)
.||||||++|++|++..+...+. +...+|.++||+|||||++|+.++..+|++..+++++.++|+....++--.+
T Consensus 290 ETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fql 369 (673)
T KOG0333|consen 290 ETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQL 369 (673)
T ss_pred eccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhh
Confidence 99999999999999999987652 3345899999999999999999999999999999999999999998888889
Q ss_pred cCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCC-----------------------
Q 005313 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA----------------------- 350 (703)
Q Consensus 294 ~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~----------------------- 350 (703)
..+|+|+|+||++|.+.|.+..+.+.++.+||+||||+|+||+|++++.+++.++|.
T Consensus 370 s~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~ 449 (673)
T KOG0333|consen 370 SMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSS 449 (673)
T ss_pred hccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999863
Q ss_pred --CceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCC
Q 005313 351 --RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCST 428 (703)
Q Consensus 351 --~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s 428 (703)
-+|++|||||+|+.++.+++.||.+|+.+.++.... ....+.|.+.++...+|...|..+++.. ...++|||+|+
T Consensus 450 k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk--~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~ 526 (673)
T KOG0333|consen 450 KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGK--PTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNT 526 (673)
T ss_pred cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCC--CccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEec
Confidence 169999999999999999999999999999987553 4456889999999999999999999987 34699999999
Q ss_pred HHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHh
Q 005313 429 KKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIG 507 (703)
Q Consensus 429 ~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriG 507 (703)
++.|+.||+.|.+ .+.+..|||+.++++|+.+|+.|+++...||||||++++|||||+|.+|||||++.++++|+||||
T Consensus 527 kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIG 606 (673)
T KOG0333|consen 527 KKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIG 606 (673)
T ss_pred hhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhc
Confidence 9999999999984 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEEecCChHHHHHHHHHHH-hccCcccHHHHHHHH
Q 005313 508 RTGRAGATGVAYTFFGDQDSRYASDLIKLLE-GAKQQVPRELRDMAS 553 (703)
Q Consensus 508 RagR~G~~g~~i~~~~~~d~~~~~~l~~~l~-~~~~~v~~~L~~la~ 553 (703)
||||+|+.|.+++|+++.|...+.+|.+.|. ......|.+|.....
T Consensus 607 RTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~ 653 (673)
T KOG0333|consen 607 RTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPD 653 (673)
T ss_pred cccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChh
Confidence 9999999999999999999998888887776 556788888866544
No 6
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-65 Score=544.31 Aligned_cols=393 Identities=45% Similarity=0.756 Sum_probs=365.2
Q ss_pred CCeEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhc
Q 005313 160 HEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRC 239 (703)
Q Consensus 160 ~~i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~ 239 (703)
..+++.+..+|.++..|.+..+.+.+..+++..+|..|+|||+.+||.+..+++++++|+||+|||.+||+|++.++...
T Consensus 60 i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~ 139 (482)
T KOG0335|consen 60 IPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDE 139 (482)
T ss_pred eeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred cCC------CCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh
Q 005313 240 RND------PRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM 313 (703)
Q Consensus 240 ~~~------~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~ 313 (703)
... ....|.+|||+|||||+.|++++++++...+.+.++.+||+.....+.+.+.++|+|+|+||++|.++++.
T Consensus 140 ~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~ 219 (482)
T KOG0335|consen 140 GPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER 219 (482)
T ss_pred CcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc
Confidence 321 11258999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccEEEeccccccc-CCChHHHHHHHHHcCC----CceEEEEeccCcHHHHHHHHHhhcC-ceecccccchhh
Q 005313 314 RRISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPA----RRQTLMYTATWPREVRKIAADLLVN-PVQVNIGNVDEL 387 (703)
Q Consensus 314 ~~~~l~~~~~IViDEaH~ml~-~gf~~~i~~il~~l~~----~~q~L~lSAT~p~~v~~l~~~~l~~-~~~i~i~~~~~~ 387 (703)
+.+.++++.+|||||||+|+| |+|.++|++|+..+.. .+|.+|||||+|+++..++..++.+ .+.+.+.....
T Consensus 220 g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~- 298 (482)
T KOG0335|consen 220 GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS- 298 (482)
T ss_pred ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc-
Confidence 999999999999999999999 9999999999988744 7899999999999999999999987 77777776653
Q ss_pred hccccceEEEEEeccchhHHHHHHHHHhcC---CCC-----eEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHH
Q 005313 388 AANKAITQHIEVLAPMDKHRRLEQILRSQE---PGS-----KIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERD 458 (703)
Q Consensus 388 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~---~~~-----kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~ 458 (703)
...++.|.+.++.+.+|...|.++|.... ... ++||||.+++.|+.++.+|. ..+++..+|++.++.+|+
T Consensus 299 -~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~ 377 (482)
T KOG0335|consen 299 -TSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIERE 377 (482)
T ss_pred -ccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHH
Confidence 45679999999999999999999997654 233 89999999999999999998 578999999999999999
Q ss_pred HHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHH
Q 005313 459 YVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLE 538 (703)
Q Consensus 459 ~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~ 538 (703)
..++.|+.|+++|||||++++||||||+|+|||+||+|.+..+|+||||||||.|+.|.++.|++..+....+.|.++|.
T Consensus 378 ~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ 457 (482)
T KOG0335|consen 378 QALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILT 457 (482)
T ss_pred HHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccHHHHHHHHc
Q 005313 539 GAKQQVPRELRDMASR 554 (703)
Q Consensus 539 ~~~~~v~~~L~~la~r 554 (703)
++++.+|+||.+++..
T Consensus 458 ea~q~vP~wl~~~~~~ 473 (482)
T KOG0335|consen 458 EANQEVPQWLSELSRE 473 (482)
T ss_pred HhcccCcHHHHhhhhh
Confidence 9999999999996643
No 7
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-64 Score=518.97 Aligned_cols=366 Identities=40% Similarity=0.602 Sum_probs=341.3
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEE
Q 005313 170 PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTV 249 (703)
Q Consensus 170 p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~v 249 (703)
.+.+.+|.++++.+++++++...++..||+||+++||.++.++|+|..|+||||||.+|+||+++.+...+. .+.+
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~----~~~~ 132 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK----LFFA 132 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC----CceE
Confidence 346789999999999999999999999999999999999999999999999999999999999999988433 2699
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHH-hccccccCcccEEEec
Q 005313 250 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE-MRRISLNQVSYLVLDE 328 (703)
Q Consensus 250 LIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~-~~~~~l~~~~~IViDE 328 (703)
|||+||||||.||.+.|..++...++++++++||.....+...+.+.++|||+||++|.++++ .+.+.+..++++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 999999999999999999999999999999999999999999999999999999999999998 7788999999999999
Q ss_pred ccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHH
Q 005313 329 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR 408 (703)
Q Consensus 329 aH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 408 (703)
||+++++.|.+.+..|++.+|..+|+++||||+++.+.++....+.+|..+....... .-..+.|++.++....|...
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~--tv~~lkQ~ylfv~~k~K~~y 290 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQ--TVDHLKQTYLFVPGKDKDTY 290 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhc--chHHhhhheEeccccccchh
Confidence 9999999999999999999999999999999999999999999999999887765443 34458889999999999999
Q ss_pred HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 005313 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 487 (703)
Q Consensus 409 L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v 487 (703)
|..++++.. +..+||||++...++.++-.|.. +|.+..+||+|++..|...++.|++|...||||||+++||+|||.|
T Consensus 291 LV~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~V 369 (476)
T KOG0330|consen 291 LVYLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHV 369 (476)
T ss_pred HHHHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCc
Confidence 999998764 58999999999999999999984 7899999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccC
Q 005313 488 RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQ 542 (703)
Q Consensus 488 ~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~ 542 (703)
++|||||+|.+..+|+||+||++|+|..|.+++|++..|-+.+.+|...+.....
T Consensus 370 d~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 370 DVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred eEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999888888888877766543
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2e-62 Score=549.93 Aligned_cols=363 Identities=43% Similarity=0.709 Sum_probs=324.1
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCC--CCCCCEEEEE
Q 005313 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND--PRLGPTVLVL 252 (703)
Q Consensus 175 sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~--~~~g~~vLIl 252 (703)
+|++++|++.++++|.+.+|..||++|+++|+.+++++|+|++||||+|||++|++|++..+...... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 68899999999999999999999999999999999999999999999999999999999988653321 1223589999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 253 ~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
+||+|||.|+.+.++++....++.+..++|+.....++..+...++|+|+||++|.+++....+.++++++|||||||+|
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999888777778888999999999999999888888999999999999999
Q ss_pred ccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHH
Q 005313 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI 412 (703)
Q Consensus 333 l~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 412 (703)
++++|...+..++..++..+|+|+||||++.++..++..++.++..+.+.... .....+.+.+..+....+...|..+
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN--TASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc--ccccceeEEEEEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888776654322 2234466777777777777777777
Q ss_pred HHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEE
Q 005313 413 LRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV 491 (703)
Q Consensus 413 l~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI 491 (703)
+... ...++||||++++.++.+++.|. ..+.+..+|+++++.+|..+++.|++|+++|||||+++++|||||+|++||
T Consensus 240 ~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 240 IGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred HHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 6653 34689999999999999999997 468899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhc
Q 005313 492 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGA 540 (703)
Q Consensus 492 ~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~ 540 (703)
+|++|.++++|+||+||+||+|..|.+++|++..+...+..+.+++...
T Consensus 319 ~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred EeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998888888777776543
No 9
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.7e-62 Score=557.59 Aligned_cols=403 Identities=38% Similarity=0.638 Sum_probs=363.6
Q ss_pred CCCHHHHHhcCCeEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHH
Q 005313 150 SISSEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~l 229 (703)
....++++++.++.+.++..|+|+.+|++++|++.++++|.+.||..|||+|.++|+.+++++|+|++||||||||++|+
T Consensus 97 ~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayl 176 (518)
T PLN00206 97 SSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFL 176 (518)
T ss_pred HHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC---CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHH
Q 005313 230 LPGFIHLKRCRN---DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGR 306 (703)
Q Consensus 230 lp~l~~l~~~~~---~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~ 306 (703)
+|++.++..... ....++++|||+||+|||.|+.++++.+....++.+.+++|+.....+...+..+++|+|+||++
T Consensus 177 lPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgr 256 (518)
T PLN00206 177 VPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGR 256 (518)
T ss_pred HHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHH
Confidence 999988754321 12246799999999999999999999999888899999999988888888888899999999999
Q ss_pred HHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchh
Q 005313 307 LNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDE 386 (703)
Q Consensus 307 L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~ 386 (703)
|.+++....+.+.++.+|||||||+|++++|...+..++..++ ..|+++||||++..+..++..++.++..+.+....
T Consensus 257 L~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~- 334 (518)
T PLN00206 257 LIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN- 334 (518)
T ss_pred HHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-
Confidence 9999998888899999999999999999999999999998885 67999999999999999999999888877765433
Q ss_pred hhccccceEEEEEeccchhHHHHHHHHHhcC-CCCeEEEEcCCHHHHHHHHHHHhc--CCceeEecCCCCHHHHHHHHHH
Q 005313 387 LAANKAITQHIEVLAPMDKHRRLEQILRSQE-PGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQSERDYVLNQ 463 (703)
Q Consensus 387 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~-~~~kvLVF~~s~~~a~~la~~L~~--~~~~~~lhg~~~~~eR~~vl~~ 463 (703)
.....+.+.+..+....|...|.+++.... ...++||||+++..++.+++.|.. .+.+..+||++++++|..+++.
T Consensus 335 -~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~ 413 (518)
T PLN00206 335 -RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKS 413 (518)
T ss_pred -CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHH
Confidence 233456667777777778888888887543 235899999999999999999963 6789999999999999999999
Q ss_pred HhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCc
Q 005313 464 FRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQ 543 (703)
Q Consensus 464 F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~ 543 (703)
|++|+++|||||+++++|||+|+|++||+||+|.++++|+||+||+||.|..|.+++|++..+...+.++++.|+...+.
T Consensus 414 Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~ 493 (518)
T PLN00206 414 FLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAA 493 (518)
T ss_pred HHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHcC
Q 005313 544 VPRELRDMASRG 555 (703)
Q Consensus 544 v~~~L~~la~r~ 555 (703)
+|++|.++...+
T Consensus 494 vp~~l~~~~~~~ 505 (518)
T PLN00206 494 IPRELANSRYLG 505 (518)
T ss_pred CCHHHHhChhhh
Confidence 999999876443
No 10
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-62 Score=555.18 Aligned_cols=364 Identities=44% Similarity=0.725 Sum_probs=335.4
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
..|.+++|.++++++|.+.||..|||||+++||.++.++|++++|+||||||++|++|++..+.... ..... .+|||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~-~~~~~-~aLil~ 106 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV-ERKYV-SALILA 106 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc-ccCCC-ceEEEC
Confidence 6799999999999999999999999999999999999999999999999999999999999977431 11111 199999
Q ss_pred CcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313 254 PTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
||||||.|+.++++++.... ++.+++++||.....+...+..+++|||+||++|++++....+.+..+.++|+||||+|
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrm 186 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRM 186 (513)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhh
Confidence 99999999999999999988 79999999999999999999989999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccch-hHHHHHH
Q 005313 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD-KHRRLEQ 411 (703)
Q Consensus 333 l~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ 411 (703)
+++||.+.+..|+..++.++|+++||||+|..+.+++..++.+|..+.+...........+.|.+..+...+ |...|..
T Consensus 187 Ld~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ 266 (513)
T COG0513 187 LDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLK 266 (513)
T ss_pred hcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888764444446677899999888776 9999999
Q ss_pred HHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEE
Q 005313 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVV 490 (703)
Q Consensus 412 ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~V 490 (703)
+++..... ++||||+++..|+.++..|.. ++.+..|||+++|++|+.+++.|++|+++||||||+++||||||+|++|
T Consensus 267 ll~~~~~~-~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 267 LLKDEDEG-RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred HHhcCCCC-eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccccee
Confidence 99877654 799999999999999999984 6899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhccCCCCCccEEEEEEecC-ChHHHHHHHHHHHhc
Q 005313 491 VNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ-DSRYASDLIKLLEGA 540 (703)
Q Consensus 491 I~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~-d~~~~~~l~~~l~~~ 540 (703)
||||+|.+++.|+||+|||||+|..|.+++|+.+. +...+..+.+.+...
T Consensus 346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred EEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999976 777888887777554
No 11
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.9e-64 Score=513.78 Aligned_cols=400 Identities=43% Similarity=0.694 Sum_probs=365.6
Q ss_pred CCCHHHHHhcCCeEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHH
Q 005313 150 SISSEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~l 229 (703)
+..-+..|++..|.++++.+|+|+.+|.+..||..+++.|++.|+.+|||+|.+.||.+|.|+|+|.+|-||||||++|+
T Consensus 146 ~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFv 225 (610)
T KOG0341|consen 146 EEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFV 225 (610)
T ss_pred HHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEe
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc----cCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC------CCceEEEeeCCCCCCchhhhhcCCCcE
Q 005313 230 LPGFIHLKRC----RNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS------SRISCTCLYGGAPKGPQLKDIDRGVDI 299 (703)
Q Consensus 230 lp~l~~l~~~----~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~------~~i~v~~~~gg~~~~~~~~~l~~g~dI 299 (703)
+|++...... .-..+.||..|||||+||||.|+++.+..+... ..+++.+..||.+..+++..+.++.+|
T Consensus 226 LP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHi 305 (610)
T KOG0341|consen 226 LPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHI 305 (610)
T ss_pred HHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeE
Confidence 9988765432 223456899999999999999998877666432 346778889999999999999999999
Q ss_pred EEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceec
Q 005313 300 VVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQV 379 (703)
Q Consensus 300 lV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i 379 (703)
+|+||++|.++|..+.++++-+.|+++||||+|+|+||+..++.|+..++..+|+|+||||+|+.+..+++..+..|+.+
T Consensus 306 vVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtv 385 (610)
T KOG0341|consen 306 VVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTV 385 (610)
T ss_pred EEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHH
Q 005313 380 NIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERD 458 (703)
Q Consensus 380 ~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~ 458 (703)
+++.... .+..+.|.++.+....|...|++.|+...+ ++||||..+.+++.+.++|. +++.++.+||+.+|++|.
T Consensus 386 NVGRAGA--AsldViQevEyVkqEaKiVylLeCLQKT~P--pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~ 461 (610)
T KOG0341|consen 386 NVGRAGA--ASLDVIQEVEYVKQEAKIVYLLECLQKTSP--PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRH 461 (610)
T ss_pred ecccccc--cchhHHHHHHHHHhhhhhhhHHHHhccCCC--ceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHH
Confidence 9987654 344567777888888888888888877654 89999999999999999886 788999999999999999
Q ss_pred HHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecC-ChHHHHHHHHHH
Q 005313 459 YVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ-DSRYASDLIKLL 537 (703)
Q Consensus 459 ~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~-d~~~~~~l~~~l 537 (703)
..++.|+.|+.+||||||+++.|+|+|++.||||||+|..+++|+|||||+||.|++|.+.+|++++ +...+.+|..+|
T Consensus 462 ~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL 541 (610)
T KOG0341|consen 462 YAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLL 541 (610)
T ss_pred HHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 566778899999
Q ss_pred HhccCcccHHHHHHHH
Q 005313 538 EGAKQQVPRELRDMAS 553 (703)
Q Consensus 538 ~~~~~~v~~~L~~la~ 553 (703)
.+++|.+|+.|..++-
T Consensus 542 ~EakQ~vP~~L~~L~~ 557 (610)
T KOG0341|consen 542 QEAKQEVPPVLAELAG 557 (610)
T ss_pred HHhhccCCHHHHHhCC
Confidence 9999999999999873
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-59 Score=537.53 Aligned_cols=363 Identities=37% Similarity=0.611 Sum_probs=319.6
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccC---CCCCCCEEE
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN---DPRLGPTVL 250 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~---~~~~g~~vL 250 (703)
.+|++++|++.|+++|.+.||..|||+|+++||.+++++|+|++||||+|||++|++|++..+..... .....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 46999999999999999999999999999999999999999999999999999999999998764221 111247999
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc-cccccCcccEEEecc
Q 005313 251 VLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEA 329 (703)
Q Consensus 251 Il~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~-~~~l~~~~~IViDEa 329 (703)
||+||+||+.|+++.+.++....++.+..++|+.....+...+..+++|||+||++|++++... .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999999999999999999887777777778999999999999998764 467889999999999
Q ss_pred cccccCCChHHHHHHHHHcCC--CceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHH
Q 005313 330 DRMLDMGFEPQIRKIVKEVPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 407 (703)
Q Consensus 330 H~ml~~gf~~~i~~il~~l~~--~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 407 (703)
|+|++++|...+..|+..++. .+|+|+||||++..+..++..++.++..+.+.... .....+.+.+......+|..
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET--ITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc--ccccceeEEEEecCHHHHHH
Confidence 999999999999999999987 78999999999999999999998887665543321 22334566666666777777
Q ss_pred HHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 005313 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 486 (703)
Q Consensus 408 ~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~ 486 (703)
.|..++... .+.++||||++++.|+.+++.|. ..+.+..+|+++++.+|+.+++.|++|+++|||||+++++|||||+
T Consensus 247 ~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 247 LLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 777777653 45789999999999999999997 4688999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHh
Q 005313 487 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 539 (703)
Q Consensus 487 v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~ 539 (703)
|++||+||+|.++++|+||+||+||.|+.|.|++|+.+.+.....++.+.+..
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998887777777666543
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-61 Score=471.52 Aligned_cols=383 Identities=35% Similarity=0.609 Sum_probs=347.1
Q ss_pred eEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccC
Q 005313 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN 241 (703)
Q Consensus 162 i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~ 241 (703)
+.++..+.-.++.+|++.+|.+++++.+...||+.|..+|+.||+.+++|+|+|++|..|+|||.+|-+.++..+.....
T Consensus 15 ~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r 94 (400)
T KOG0328|consen 15 VEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVR 94 (400)
T ss_pred eeEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccc
Confidence 45555566678899999999999999999999999999999999999999999999999999999988777766543221
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCc
Q 005313 242 DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQV 321 (703)
Q Consensus 242 ~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~ 321 (703)
...+|||+|||||+.|+.+.+..++...++.+..+.||....+.++.+..+++++.+||++++++++.+.+....+
T Consensus 95 ----~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~v 170 (400)
T KOG0328|consen 95 ----ETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAV 170 (400)
T ss_pred ----eeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccce
Confidence 2479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEec
Q 005313 322 SYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA 401 (703)
Q Consensus 322 ~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~ 401 (703)
+++|+||||.|++.+|..++-.++..+|+..|++++|||+|.++.+....|+.+|+.+.+.. +++.. ..++|++..+.
T Consensus 171 kmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkr-deltl-EgIKqf~v~ve 248 (400)
T KOG0328|consen 171 KMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKR-DELTL-EGIKQFFVAVE 248 (400)
T ss_pred eEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEec-CCCch-hhhhhheeeec
Confidence 99999999999999999999999999999999999999999999999999999999987755 44433 33566665555
Q ss_pred c-chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 005313 402 P-MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 479 (703)
Q Consensus 402 ~-~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~ 479 (703)
. +.|++.|+++...+.- ..++|||+|++.+++|.+.|.+ .|.+..+||+|++++|++++++|++|+.+|||+||+.+
T Consensus 249 ~EewKfdtLcdLYd~LtI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwa 327 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWA 327 (400)
T ss_pred hhhhhHhHHHHHhhhheh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhh
Confidence 4 4599999999887654 4789999999999999999984 68899999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHHHHH
Q 005313 480 RGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDM 551 (703)
Q Consensus 480 ~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L~~l 551 (703)
||||+|.|++|||||+|.+.+.|+|||||.||.|.+|.++-|+...|.+.+.++.+.+.-...++|..+.++
T Consensus 328 RGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 328 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred ccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 999999999999999999999999999999999999999999999999999999999988888888776553
No 14
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=8.8e-60 Score=496.48 Aligned_cols=363 Identities=37% Similarity=0.568 Sum_probs=336.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 251 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLI 251 (703)
....|+...|.+..++++..+||..+|++|+.+|+.++.++|+++.|.||+|||++||||++.++.+....++.+..+||
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 34568889999999999999999999999999999999999999999999999999999999999998877777889999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc-cccccCcccEEEecc
Q 005313 252 LSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEA 329 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~-~~~l~~~~~IViDEa 329 (703)
||||||||.|++.+++++.+.. .+.+..+.||.......+.+.++|+|+|+||++|.+++.+. .+...+++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999998887 89999999999988888888889999999999999999854 344566789999999
Q ss_pred cccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcC-ceecccccchhhhccccceEEEEEeccchhHHH
Q 005313 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVN-PVQVNIGNVDELAANKAITQHIEVLAPMDKHRR 408 (703)
Q Consensus 330 H~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~-~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 408 (703)
|++++++|+..+..|+..+|..+|.++||||.+..+++++.-.+.. +..+++....+...+..+.|-+.+.....++..
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~l 319 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSL 319 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHH
Confidence 9999999999999999999999999999999999999999887765 888888777777888889998888888888888
Q ss_pred HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 005313 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 487 (703)
Q Consensus 409 L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v 487 (703)
|..+|+++....++||||+|...+..+++.|+. .++|..|||..+|..|..+..+|++.+.-|||||||++||+|+|+|
T Consensus 320 l~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 320 LYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 999999887778999999999999999999984 6899999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 488 RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 488 ~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
+.||+||+|.++++|+||+|||+|.|+.|.+++|+.+.+..+++.|.
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999988877666555
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-58 Score=513.06 Aligned_cols=365 Identities=34% Similarity=0.557 Sum_probs=322.7
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCC---CCCCCEE
Q 005313 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND---PRLGPTV 249 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~---~~~g~~v 249 (703)
-.+|++++|++.++++|...||..|+|+|+++||.+++++|+|++||||||||++|++|++..+...... ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3689999999999999999999999999999999999999999999999999999999999988654321 1235799
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecc
Q 005313 250 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329 (703)
Q Consensus 250 LIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEa 329 (703)
|||+||+|||.|+.+++.++....++.+..++|+.....+...+..+++|+|+||++|.+++....+.+.++++||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999999999999999998877777778888999999999999999888889999999999999
Q ss_pred cccccCCChHHHHHHHHHcCC--CceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHH
Q 005313 330 DRMLDMGFEPQIRKIVKEVPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 407 (703)
Q Consensus 330 H~ml~~gf~~~i~~il~~l~~--~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 407 (703)
|+|++++|...+..++..++. .++.+++|||++..+.+++..++.++..+.+.... .....+.+.+.......|..
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~--~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ--KTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC--cCCCceeEEEEeCCHHHHHH
Confidence 999999999999999999874 56789999999999999999999888777664332 22334555555566667778
Q ss_pred HHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 005313 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 486 (703)
Q Consensus 408 ~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~ 486 (703)
.|..+++.. ...++||||++++.|+.+++.|. ..+.+..+||++++++|..++++|++|+++|||||+++++|||+|+
T Consensus 245 ~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 245 LLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred HHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 888887664 34689999999999999999997 4789999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhc
Q 005313 487 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGA 540 (703)
Q Consensus 487 v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~ 540 (703)
|++||+||+|.+.++|+||+||+||.|+.|.+++|+.+.+......+.+.+...
T Consensus 324 v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 324 VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred cCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999988877777766655444
No 16
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-59 Score=530.42 Aligned_cols=402 Identities=43% Similarity=0.733 Sum_probs=373.6
Q ss_pred CHHHHHhcCC-eEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHH
Q 005313 152 SSEAYRRRHE-VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 152 ~~~~~~~~~~-i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ll 230 (703)
....|+...+ |++.+...|.|+.+|.+.++...++..+++++|..|+|||.+|||+|+.|++||.+|.||||||++|++
T Consensus 342 eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~L 421 (997)
T KOG0334|consen 342 EVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLL 421 (997)
T ss_pred HHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhc
Confidence 3445777777 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC-CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHH
Q 005313 231 PGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLND 309 (703)
Q Consensus 231 p~l~~l~~~~~-~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~ 309 (703)
|++.++...+. ..+.||.+|||+||+||+.||.+++++|++.++++++|+||+.....++.++.+++.|+||||+++++
T Consensus 422 Pmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD 501 (997)
T KOG0334|consen 422 PMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMID 501 (997)
T ss_pred chhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhh
Confidence 99987765443 34558999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc---ccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchh
Q 005313 310 ILEMRR---ISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDE 386 (703)
Q Consensus 310 ~l~~~~---~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~ 386 (703)
++..+. ..+.++.+||+||||+|.+++|.+++..|++.+++.+|++++|||+|+.++.++...+..|+.+.+. ..
T Consensus 502 ~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~ 579 (997)
T KOG0334|consen 502 ILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GR 579 (997)
T ss_pred hHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cc
Confidence 986543 4466677999999999999999999999999999999999999999999999999999999997776 34
Q ss_pred hhccccceEEEEEec-cchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHH
Q 005313 387 LAANKAITQHIEVLA-PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQF 464 (703)
Q Consensus 387 ~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F 464 (703)
....+.+.+.+.++. ..+|+..|+++|.......++||||.....|+.|.+.|.+ .+.+..+||+.++.+|+.++++|
T Consensus 580 svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~df 659 (997)
T KOG0334|consen 580 SVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDF 659 (997)
T ss_pred eeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHH
Confidence 456677889998888 8899999999999998889999999999999999998874 67888899999999999999999
Q ss_pred hcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcc
Q 005313 465 RAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQV 544 (703)
Q Consensus 465 ~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v 544 (703)
+++.+.+||||+++++|||++++.+|||||+|...++|+||+||+||+|.+|.|++|+++.+.+++.+|.+.|+...+.+
T Consensus 660 K~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~ 739 (997)
T KOG0334|consen 660 KNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPV 739 (997)
T ss_pred hccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHcC
Q 005313 545 PRELRDMASRG 555 (703)
Q Consensus 545 ~~~L~~la~r~ 555 (703)
|..|+.|..+-
T Consensus 740 P~~l~~l~~~f 750 (997)
T KOG0334|consen 740 PKLLQALSERF 750 (997)
T ss_pred chHHHHHHHHH
Confidence 99999998754
No 17
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-59 Score=492.57 Aligned_cols=359 Identities=36% Similarity=0.554 Sum_probs=322.4
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
.+|.+++|...|++++..+||..|||||..+||..|-++|++.||.||||||.+|++|+|..|...+.. ..-.+|||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-~~~TRVLVL~ 259 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-VAATRVLVLV 259 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-CcceeEEEEe
Confidence 489999999999999999999999999999999999999999999999999999999999998875544 2345899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh-ccccccCcccEEEeccccc
Q 005313 254 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-RRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~-~~~~l~~~~~IViDEaH~m 332 (703)
|||||+.|++...++++..+.|.+++.+||.....|-..|+..+||||+||++|.+++.+ ..+.++++.++|+||||+|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 999999999999999999999999999999999999999999999999999999999975 4688999999999999999
Q ss_pred ccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEec---cchhHHHH
Q 005313 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA---PMDKHRRL 409 (703)
Q Consensus 333 l~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~L 409 (703)
|+.+|..++.+|+..++.++|+++||||+..++.+++.--|..|+.+.+.+.... ...+.|.+..+. +..+...|
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~--a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDT--APKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcccc--chhhhHHHheeccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999988654432 233555544443 23455566
Q ss_pred HHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCcc
Q 005313 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR 488 (703)
Q Consensus 410 ~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~ 488 (703)
..++.... ...+|||+.|++.|..|.-.|- -++.+..+||.++|.+|.+.++.|++.+++||||||+++|||||+.|.
T Consensus 418 ~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~ 496 (691)
T KOG0338|consen 418 ASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQ 496 (691)
T ss_pred HHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcccee
Confidence 66666554 4689999999999999988775 467889999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHH
Q 005313 489 VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKL 536 (703)
Q Consensus 489 ~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~ 536 (703)
+||||++|.+.+.|+||+||+.|+|..|.+++|+.+.+.+.++.+++-
T Consensus 497 tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 497 TVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred EEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999999999999999999988877766643
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.4e-57 Score=506.79 Aligned_cols=358 Identities=41% Similarity=0.675 Sum_probs=323.6
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
.+|++++|++.++++|.+.||..|+|+|+++|+.+++++|+|++||||+|||++|++|++..+.... ..+++|||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~----~~~~~lil~ 79 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR----FRVQALVLC 79 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc----CCceEEEEe
Confidence 5789999999999999999999999999999999999999999999999999999999999875422 235899999
Q ss_pred CcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313 254 PTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
||+||+.|+.++++++.... ++.+..++|+.....+...+..+++|+|+||++|.+++....+.+.++++|||||||+|
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRM 159 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHH
Confidence 99999999999999987644 68899999999888888888889999999999999999988888999999999999999
Q ss_pred ccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHH
Q 005313 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI 412 (703)
Q Consensus 333 l~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 412 (703)
++++|...+..++..++..+|+|+||||+++.+..++..++.++..+.+.... ....+.+.+..+...+|...|..+
T Consensus 160 l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 160 LDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred hCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887664432 233467777777777888888888
Q ss_pred HHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEE
Q 005313 413 LRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV 491 (703)
Q Consensus 413 l~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI 491 (703)
+.... ..++||||++++.++.+++.|. ..+.+..+||++++.+|+.+++.|++|+++|||||+++++|||||++++||
T Consensus 237 l~~~~-~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHHQ-PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhcC-CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 87654 4689999999999999999998 468899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHh
Q 005313 492 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 539 (703)
Q Consensus 492 ~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~ 539 (703)
+||+|.+.+.|+||+||+||+|+.|.+++|+.+.+......+.+.+..
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999887777666666543
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7.4e-57 Score=517.86 Aligned_cols=356 Identities=38% Similarity=0.632 Sum_probs=318.6
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEE
Q 005313 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl 252 (703)
..+|.+++|++.++++|.++||.+|+|+|+++|+.+++++|+|++||||+|||++|++|++..+.... ..+++|||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~----~~~~~LIL 80 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL----KAPQILVL 80 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc----CCCeEEEE
Confidence 45699999999999999999999999999999999999999999999999999999999998875421 24689999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccc
Q 005313 253 SPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331 (703)
Q Consensus 253 ~PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ 331 (703)
+||++|+.|+++++.++.... ++.++.++|+.....++..+..+++|||+||++|++++....+.++++.+|||||||+
T Consensus 81 ~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 81 APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 (629)
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH
Confidence 999999999999999887654 6889999999888888888888899999999999999998888899999999999999
Q ss_pred cccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHH
Q 005313 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411 (703)
Q Consensus 332 ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 411 (703)
|++++|...+..++..++..+|+++||||+|..+..++..++.++..+.+.... .....+.+.+..+....|...|..
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~--~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV--TTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc--ccCCceEEEEEEechhhHHHHHHH
Confidence 999999999999999999999999999999999999999999988877664332 233446677777777788888888
Q ss_pred HHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEE
Q 005313 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVV 490 (703)
Q Consensus 412 ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~V 490 (703)
++.... ..++||||+++..++.++..|. ..+.+..+|+++++.+|+.+++.|++|+++|||||+++++|||+|+|++|
T Consensus 239 ~L~~~~-~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhcC-CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 887654 3589999999999999999998 46889999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHH
Q 005313 491 VNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIK 535 (703)
Q Consensus 491 I~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~ 535 (703)
|+||+|.+++.|+||+||+||+|+.|.+++|+.+.+...+..+.+
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHH
Confidence 999999999999999999999999999999998776655554443
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-57 Score=473.91 Aligned_cols=355 Identities=38% Similarity=0.585 Sum_probs=316.1
Q ss_pred CCcCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCC-CCEEEE
Q 005313 175 SFDATG--FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL-GPTVLV 251 (703)
Q Consensus 175 sf~~~~--l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~-g~~vLI 251 (703)
.|+++. |.++|++++...||..+||+|..+||.++.++||++.|+||||||++|++|++..+.+....... ..-+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 455544 55999999999999999999999999999999999999999999999999999998554333222 246899
Q ss_pred EcCcHHHHHHHHHHHHHhcCC-CCceEEEeeCCCCCCchhhhhcC-CCcEEEECHHHHHHHHHhcc--ccccCcccEEEe
Q 005313 252 LSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRR--ISLNQVSYLVLD 327 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~~-~~i~v~~~~gg~~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~--~~l~~~~~IViD 327 (703)
|+|||||+.||.+.+..|... .++.+.+++||....+.+..+.+ ++.|+|+||++|.+++.+.. +++..+.++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999998888766 67899999999888877777665 68899999999999998644 445599999999
Q ss_pred cccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHH
Q 005313 328 EADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 407 (703)
Q Consensus 328 EaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 407 (703)
|||++++|+|...+..|+..||+.+.+=+||||...++.+++...+.+|+.+.+...........+...+..+.+.+|..
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~ 244 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLS 244 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877655445556777888999999999
Q ss_pred HHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc---CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 005313 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR---QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDI 484 (703)
Q Consensus 408 ~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~---~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDI 484 (703)
.|.++|.... .+++|||++|...++++...|.. ...+..+||.+.+..|..++.+|++....+|+|||+++|||||
T Consensus 245 ~lv~~L~~~~-~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi 323 (567)
T KOG0345|consen 245 QLVHLLNNNK-DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI 323 (567)
T ss_pred HHHHHHhccc-cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC
Confidence 9999998854 57999999999999999888864 5678999999999999999999999888999999999999999
Q ss_pred CCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHH
Q 005313 485 KDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYA 530 (703)
Q Consensus 485 p~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~ 530 (703)
|+|++||+||+|.++..|+||+|||+|+|..|.+++|+.+.+..++
T Consensus 324 p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 324 PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHH
Confidence 9999999999999999999999999999999999999999665544
No 21
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-58 Score=461.68 Aligned_cols=367 Identities=33% Similarity=0.567 Sum_probs=341.1
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
..|+++.|..+++..+.++||..|.|+|.++||.++.|+|+++.|..|+|||.+|++|++..+..... ...++|++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~----~IQ~~ilV 160 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKN----VIQAIILV 160 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcccc----ceeEEEEe
Confidence 46889999999999999999999999999999999999999999999999999999999998765332 34789999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccc
Q 005313 254 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml 333 (703)
||||||.|+.+.++.+.+..++.+...+||+...+.+-++....+++|+||++++++.+++...++++.++|+||||.|+
T Consensus 161 PtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlL 240 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLL 240 (459)
T ss_pred ecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhh
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHH
Q 005313 334 DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 413 (703)
Q Consensus 334 ~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 413 (703)
+..|.+.+.+++..+|+.+|++++|||+|-.+..+...++.+|..+++- +++ ....++|++.++.+..|...|..++
T Consensus 241 s~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM--~eL-tl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 241 SVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM--EEL-TLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred chhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh--hhh-hhcchhhheeeechhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999988763 333 4456899999999999999998888
Q ss_pred HhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE
Q 005313 414 RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN 492 (703)
Q Consensus 414 ~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~ 492 (703)
....- ...||||++...++.+|+.+.+ ++.|..+|+.|-|+.|..++..|++|.++.|||||.+.||||++.|++|||
T Consensus 318 skLqI-NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 318 SKLQI-NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHhcc-cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 77755 3678999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHH
Q 005313 493 YDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548 (703)
Q Consensus 493 ~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L 548 (703)
||+|.+.+.|+|||||.||.|..|.++.+++..|...+.++.+.|....+.+|..+
T Consensus 397 FDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred cCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 99999999999999999999999999999999999888888888877777776544
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.2e-56 Score=494.48 Aligned_cols=362 Identities=36% Similarity=0.571 Sum_probs=319.1
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 175 sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
+|++++|++.+++.|...||..|+++|.++|+.+++++|+|++||||+|||++|++|++.++..........+++|||+|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999988764333333568999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccccc
Q 005313 255 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 334 (703)
Q Consensus 255 treLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~ 334 (703)
|+||+.|+.+.+..+....++.+..++|+.....+...+...++|||+||++|++++....+.+.++++|||||||+|++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999999999999999999988777777777899999999999999998888899999999999999999
Q ss_pred CCChHHHHHHHHHcCCCceEEEEeccCcH-HHHHHHHHhhcCceecccccchhhhccccceEEEEEecc-chhHHHHHHH
Q 005313 335 MGFEPQIRKIVKEVPARRQTLMYTATWPR-EVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP-MDKHRRLEQI 412 (703)
Q Consensus 335 ~gf~~~i~~il~~l~~~~q~L~lSAT~p~-~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~l 412 (703)
++|...+..+...++...|+++||||++. .+..+...++.++..+.+.... .....+.+.+..... ..|...|..+
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR--RERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc--ccccCceEEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999985 4778888888888776654322 222335555554443 4566777777
Q ss_pred HHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEE
Q 005313 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV 491 (703)
Q Consensus 413 l~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI 491 (703)
++.. ...++||||++++.|+.++..|.+ .+.+..+|+++++.+|..+++.|++|+++|||||+++++|||+|++++||
T Consensus 240 ~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 240 LKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred HhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 7643 456999999999999999999984 68899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHh
Q 005313 492 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 539 (703)
Q Consensus 492 ~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~ 539 (703)
+||+|.+.+.|+||+||+||.|..|.+++|++..|...+.++.+++..
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998888887777766643
No 23
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-57 Score=457.74 Aligned_cols=363 Identities=33% Similarity=0.514 Sum_probs=326.0
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEE
Q 005313 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl 252 (703)
...|..++|.+++++.|..+++..|||+|+.|||.||.|+|+|-+|.||||||++|.+|++..+...+. +..+||+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~----giFalvl 81 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY----GIFALVL 81 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC----cceEEEe
Confidence 467999999999999999999999999999999999999999999999999999999999999877433 5689999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc----cccccCcccEEEec
Q 005313 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR----RISLNQVSYLVLDE 328 (703)
Q Consensus 253 ~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~----~~~l~~~~~IViDE 328 (703)
+|||||+.|+.+.|..+++..++++.+++|+...-.+...|.+..||||+||++|.+++... .+.++++.++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999999999999999999999888888888899999999999999988754 34578899999999
Q ss_pred ccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHH
Q 005313 329 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR 408 (703)
Q Consensus 329 aH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 408 (703)
||+|++..|...+.-+.+.+|..+|+++||||+.+.+.++...-...+..+.....+.......+.+.+..+....|...
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaY 241 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAY 241 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHH
Confidence 99999999999999999999999999999999998887766555444333444444455566678888889999999999
Q ss_pred HHHHHHhcCC--CCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 005313 409 LEQILRSQEP--GSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK 485 (703)
Q Consensus 409 L~~ll~~~~~--~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp 485 (703)
|..+|+.... ...++||+++..+|+.|+..|+. ++.+..+|+.|+|.+|...+..|+++..+||||||+++||+|||
T Consensus 242 Lv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP 321 (442)
T KOG0340|consen 242 LVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIP 321 (442)
T ss_pred HHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCC
Confidence 9999987644 67899999999999999999985 78899999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHh
Q 005313 486 DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 539 (703)
Q Consensus 486 ~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~ 539 (703)
.|.+|||||+|.++.+|+||+||+.|+|..|.++.++++.|-+.+..+.+.+..
T Consensus 322 ~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igk 375 (442)
T KOG0340|consen 322 TVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGK 375 (442)
T ss_pred ceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888777666655543
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-56 Score=471.21 Aligned_cols=355 Identities=35% Similarity=0.512 Sum_probs=327.1
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 251 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLI 251 (703)
.+..|.+++|+...++.|+..+|..+|.+|+++||..|+|+|||..|.||||||++|++|++..|....=.+..|--+||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalI 146 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALI 146 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999876545555677999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh-ccccccCcccEEEeccc
Q 005313 252 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-RRISLNQVSYLVLDEAD 330 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~-~~~~l~~~~~IViDEaH 330 (703)
|+||||||.|+++.+.++++...+.+.++.||........++. .++|+||||++|+.++.. ..++..++.++|+||||
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH
Confidence 9999999999999999999999999999999987655555444 489999999999998864 45677889999999999
Q ss_pred ccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHH
Q 005313 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410 (703)
Q Consensus 331 ~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 410 (703)
+|++|||...+..|++.+|+.+|+|+||||..+.+.++++..+.+|..+.+...........+.|.+.++.-.+|+..|.
T Consensus 226 R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~ 305 (758)
T KOG0343|consen 226 RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLW 305 (758)
T ss_pred HHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999988876666677788999999999999999999
Q ss_pred HHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc---CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 005313 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTR---QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 487 (703)
Q Consensus 411 ~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~---~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v 487 (703)
.+++.+.. .++|||+.|.+++..+++.+.+ ++++..+||.|.|..|..+...|...+.-||+|||+++||||+|.|
T Consensus 306 sFI~shlk-~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaV 384 (758)
T KOG0343|consen 306 SFIKSHLK-KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAV 384 (758)
T ss_pred HHHHhccc-cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCccc
Confidence 99998754 6999999999999999998875 6789999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChH
Q 005313 488 RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSR 528 (703)
Q Consensus 488 ~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~ 528 (703)
++||++|.|.++++|+||+||+.|....|.+++++.+.+..
T Consensus 385 dwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 385 DWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEE 425 (758)
T ss_pred ceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHH
Confidence 99999999999999999999999999999999999998843
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.4e-54 Score=483.51 Aligned_cols=368 Identities=38% Similarity=0.600 Sum_probs=322.7
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCC---CCCC
Q 005313 171 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDP---RLGP 247 (703)
Q Consensus 171 ~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~---~~g~ 247 (703)
+....|.+++|++.++++|.+.||..||++|+++|+.+++|+|+|++++||||||++|++|++..+....... ...+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3446788899999999999999999999999999999999999999999999999999999999886543211 1146
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEEE
Q 005313 248 TVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVL 326 (703)
Q Consensus 248 ~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IVi 326 (703)
++|||+||++|+.|+.+.++.+....++.+..++|+.....+.+.+.. .++|||+||++|++++......++++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 899999999999999999999998889999999998877666666654 5899999999999988888888999999999
Q ss_pred ecccccccCCChHHHHHHHHHcCC--CceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccch
Q 005313 327 DEADRMLDMGFEPQIRKIVKEVPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD 404 (703)
Q Consensus 327 DEaH~ml~~gf~~~i~~il~~l~~--~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~ 404 (703)
||||++++++|...+..++..++. .+|+|++|||++.++..++..++.++..+.+.... .....+.+++..+...+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN--VASDTVEQHVYAVAGSD 321 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc--CCCCcccEEEEEecchh
Confidence 999999999999999999998864 57999999999999999999999888776654322 22234566677777777
Q ss_pred hHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCC
Q 005313 405 KHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLD 483 (703)
Q Consensus 405 k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GID 483 (703)
+...|..++... ...++||||++++.++.+++.|.+ .+.+..+||++++++|.++++.|++|+++|||||+++++|||
T Consensus 322 k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 322 KYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 888888887654 346999999999999999999974 678999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhcc
Q 005313 484 IKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAK 541 (703)
Q Consensus 484 Ip~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~ 541 (703)
|+++++||+|++|.+..+|+||+||+||.|++|.+++|+.+.|..++..+.+++....
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999888888888877775553
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-55 Score=462.73 Aligned_cols=363 Identities=36% Similarity=0.574 Sum_probs=311.9
Q ss_pred CCCCcCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCC--CCCCCEE
Q 005313 173 FMSFDATGFPPELLREVHN-AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND--PRLGPTV 249 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~-~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~--~~~g~~v 249 (703)
-..|..++|++.++..|.. +++..||.+|+++||.+++++|++|.++||||||++|++|++..+.....+ ...|+.+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 3578899999999999975 599999999999999999999999999999999999999999999875532 3458899
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCc-eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh-ccccccCcccEEEe
Q 005313 250 LVLSPTRELATQIQDEAVKFGKSSRI-SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-RRISLNQVSYLVLD 327 (703)
Q Consensus 250 LIl~PtreLa~Q~~~~~~k~~~~~~i-~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~-~~~~l~~~~~IViD 327 (703)
|||+||||||.|+++.+.++.+.+.. ....+.||..+.....++++|++|+|+||++|.|++++ ..+.+.++.+||||
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 99999999999999999999887663 44567788888888889999999999999999999874 56778899999999
Q ss_pred cccccccCCChHHHHHHHHHc-------------CCCceEEEEeccCcHHHHHHHHHhhcCceecccccc----------
Q 005313 328 EADRMLDMGFEPQIRKIVKEV-------------PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNV---------- 384 (703)
Q Consensus 328 EaH~ml~~gf~~~i~~il~~l-------------~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~---------- 384 (703)
|+|++++.||+..|..|++.+ |...|.+++|||+...+..++..-+.+|+.+.....
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 999999999999999998876 224789999999999999999999999887762111
Q ss_pred -------------hhhhccccceEEEEEeccchhHHHHHHHHHhc---CCCCeEEEEcCCHHHHHHHHHHHhc-------
Q 005313 385 -------------DELAANKAITQHIEVLAPMDKHRRLEQILRSQ---EPGSKIIVFCSTKKMCDQLARNLTR------- 441 (703)
Q Consensus 385 -------------~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~---~~~~kvLVF~~s~~~a~~la~~L~~------- 441 (703)
+.......+.|++.++.+.-.+..|..+|.+. .+..++|||+.+.+.++.-+..|.+
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e 454 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLE 454 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccc
Confidence 11233445667788888776666666666543 3456999999999999988877753
Q ss_pred ----------------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHH
Q 005313 442 ----------------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHR 505 (703)
Q Consensus 442 ----------------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQr 505 (703)
...+..+||.|+|++|..+++.|....-.||+|||+++||||+|+|.+||+||.|.++++|+||
T Consensus 455 ~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHR 534 (708)
T KOG0348|consen 455 GSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHR 534 (708)
T ss_pred cccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHH
Confidence 1357789999999999999999999988999999999999999999999999999999999999
Q ss_pred HhccCCCCCccEEEEEEecCChHHHHHHHH
Q 005313 506 IGRTGRAGATGVAYTFFGDQDSRYASDLIK 535 (703)
Q Consensus 506 iGRagR~G~~g~~i~~~~~~d~~~~~~l~~ 535 (703)
|||+.|+|.+|.+++|+.+.+.++.+.+..
T Consensus 535 vGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 535 VGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred hhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 999999999999999999999887665543
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.2e-52 Score=462.28 Aligned_cols=361 Identities=31% Similarity=0.585 Sum_probs=312.0
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEE
Q 005313 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl 252 (703)
..+|+++++++.++++|.+.+|..|+|+|.++|+.+++++|++++||||+|||++|++|++..+... ..++++|||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~----~~~~~~lil 102 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD----LNACQALIL 102 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC----CCCceEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999887532 124589999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 253 ~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
+|+++|+.|+.+.+..++....+.+..++|+.....++..+..+++|+|+||++|.+++......++++++|||||||++
T Consensus 103 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 103 APTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEM 182 (401)
T ss_pred CCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHH
Confidence 99999999999999999888888888888888777777777788999999999999999888888999999999999999
Q ss_pred ccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEecc-chhHHHHHH
Q 005313 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP-MDKHRRLEQ 411 (703)
Q Consensus 333 l~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ 411 (703)
++.+|...+.+++..+++..|++++|||++..+..+...++.++..+.+.... . ....+.+.+..+.. ..+...+..
T Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 183 LSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDE-L-TLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC-c-ccCCceEEEEecChHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888887765443321 1 12223444443333 335555666
Q ss_pred HHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEE
Q 005313 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVV 490 (703)
Q Consensus 412 ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~V 490 (703)
+++... ..++||||+++++++.+++.|.+ .+.+..+|+++++++|..+++.|++|+++|||||+++++|||+|++++|
T Consensus 261 ~~~~~~-~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V 339 (401)
T PTZ00424 261 LYETLT-ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV 339 (401)
T ss_pred HHHhcC-CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE
Confidence 665443 46899999999999999999974 5889999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhc
Q 005313 491 VNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGA 540 (703)
Q Consensus 491 I~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~ 540 (703)
|++|+|.+..+|+||+||+||.|+.|.|++|+.+.+...+..+.+.+...
T Consensus 340 I~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~ 389 (401)
T PTZ00424 340 INYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQ 389 (401)
T ss_pred EEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999999888877777666655433
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-53 Score=443.23 Aligned_cols=365 Identities=30% Similarity=0.481 Sum_probs=319.9
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccC--CCCCCCEEEE
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN--DPRLGPTVLV 251 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~--~~~~g~~vLI 251 (703)
.+|++++|++.|++++.+.||.+||-+|+.+||.+|+++|+++.|.||||||++|+||+++.+..... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 68999999999999999999999999999999999999999999999999999999999998876543 3456889999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCC--ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcc-ccccCcccEEEec
Q 005313 252 LSPTRELATQIQDEAVKFGKSSR--ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR-ISLNQVSYLVLDE 328 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~~~~--i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~-~~l~~~~~IViDE 328 (703)
|+||+|||+|++..+.++..... +++..+............+....+|||+||.+|+.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999888754432 44444443443333334556668999999999999998776 6678899999999
Q ss_pred ccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHH
Q 005313 329 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR 408 (703)
Q Consensus 329 aH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 408 (703)
||.|+..||+..+.++.+.+|+..|.++||||+.+++..+-..++.+|+.+.+.. .++.....+.|+...+.+.+|...
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e-~el~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTE-GELPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecc-ccCCCcccceEEEEEeccchhHHH
Confidence 9999999999999999999999999999999999999999999999999987755 445566778888888889999999
Q ss_pred HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc----------
Q 005313 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV---------- 477 (703)
Q Consensus 409 L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv---------- 477 (703)
+..+++..--.+++|||+|+++.|..+.-.|++ +++.+++.+.|+...|..++++|+.|.++||||||.
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 999988776678999999999999999888875 677899999999999999999999999999999981
Q ss_pred -------------------------ccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHH
Q 005313 478 -------------------------AARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASD 532 (703)
Q Consensus 478 -------------------------~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~ 532 (703)
.+||||+.+|..|||||+|.+.+.|+||+|||+|++++|.+++|+.+.+......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 5699999999999999999999999999999999999999999999887764455
Q ss_pred HHHHHHh
Q 005313 533 LIKLLEG 539 (703)
Q Consensus 533 l~~~l~~ 539 (703)
+..++..
T Consensus 418 le~~~~d 424 (569)
T KOG0346|consen 418 LESILKD 424 (569)
T ss_pred HHHHHhh
Confidence 5554443
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-52 Score=443.15 Aligned_cols=369 Identities=33% Similarity=0.509 Sum_probs=296.1
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhcc-------
Q 005313 169 VPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCR------- 240 (703)
Q Consensus 169 ~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~------- 240 (703)
.+..+..|..+.|+.+++++|..+||..||+||.-+||.+..+ .|+|..|.||||||++|-||++..+....
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456678999999999999999999999999999999999999 69999999999999999999999554322
Q ss_pred --CCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc--
Q 005313 241 --NDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-- 316 (703)
Q Consensus 241 --~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~-- 316 (703)
......+..||++||||||.|+.+.+..++..++|++..++||.....|.+.+.+..+|||+||++|..++.....
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 1122234599999999999999999999999999999999999999888888998999999999999999875543
Q ss_pred -cccCcccEEEecccccccCCChHHHHHHHHHcC-----CCceEEEEeccCcHHHHHHHH-----------------Hhh
Q 005313 317 -SLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP-----ARRQTLMYTATWPREVRKIAA-----------------DLL 373 (703)
Q Consensus 317 -~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~-----~~~q~L~lSAT~p~~v~~l~~-----------------~~l 373 (703)
.+.++.|+||||+|+|++.|+...+.+|++.+. ..+|++.||||+.-....-+. .++
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 567899999999999999999999999888764 468999999998532211111 111
Q ss_pred ------cCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCcee
Q 005313 374 ------VNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAA 446 (703)
Q Consensus 374 ------~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~ 446 (703)
..|..+.+... ......++.....+...+|.-.|..+|..+ + +++|||||++..+..|+-+|+. .++..
T Consensus 416 k~ig~~~kpkiiD~t~q--~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-P-GrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQ--SATASTLTESLIECPPLEKDLYLYYFLTRY-P-GRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHhCccCCCeeEecCcc--hhHHHHHHHHhhcCCccccceeEEEEEeec-C-CceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 11211211110 000011111111122222222222222222 2 5899999999999999999984 68889
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCC
Q 005313 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 526 (703)
Q Consensus 447 ~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d 526 (703)
.||+.|.|.+|.+.++.|++....||||||+++||||||+|.|||||-.|.+.+.|+||.||+.|++..|..++|+.+.+
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcc
Q 005313 527 SRYASDLIKLLEGAK 541 (703)
Q Consensus 527 ~~~~~~l~~~l~~~~ 541 (703)
...+.+|.+-|+...
T Consensus 572 ~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 572 VGPLKKLCKTLKKKE 586 (731)
T ss_pred hHHHHHHHHHHhhcc
Confidence 888888887776554
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-50 Score=408.89 Aligned_cols=360 Identities=31% Similarity=0.525 Sum_probs=307.6
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCE
Q 005313 171 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPT 248 (703)
Q Consensus 171 ~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~ 248 (703)
-...+|+++.|.|++++.|..++|..|+.||+.++|.+|.. +++|.++..|+|||.+|++.++..+.-.. ..|.
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~----~~PQ 162 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV----VVPQ 162 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc----cCCC
Confidence 35578999999999999999999999999999999999987 79999999999999999998877664322 2468
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh-ccccccCcccEEEe
Q 005313 249 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-RRISLNQVSYLVLD 327 (703)
Q Consensus 249 vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~-~~~~l~~~~~IViD 327 (703)
+|.|+||+|||.|+.+.+.+.++..++......-+.... .-..+ ..+|+|.||+.+.+++.. ..+.+..+.++|+|
T Consensus 163 ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~-rG~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVlD 239 (477)
T KOG0332|consen 163 CICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK-RGNKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLD 239 (477)
T ss_pred ceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc-cCCcc--hhheeeCCCccHHHHHHHHHhhChhhceEEEec
Confidence 899999999999999999999998877777665554111 00111 157999999999999886 78889999999999
Q ss_pred ccccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEe-ccchh
Q 005313 328 EADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL-APMDK 405 (703)
Q Consensus 328 EaH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~-~~~~k 405 (703)
|||.|++ .||..+-..|...+|++.|+|+||||+...+..++..++.++..+.+... ++.. ..|.|.+..+ ...+|
T Consensus 240 EAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e-el~L-~~IkQlyv~C~~~~~K 317 (477)
T KOG0332|consen 240 EADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKRE-ELAL-DNIKQLYVLCACRDDK 317 (477)
T ss_pred chhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehh-hccc-cchhhheeeccchhhH
Confidence 9999987 56899999999999999999999999999999999999999988877653 3333 3455555544 45688
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 005313 406 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDI 484 (703)
Q Consensus 406 ~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDI 484 (703)
++.|.++.....-+ ..||||.|++.+.+++..|. +++.+.++||+|+..+|..+++.|+.|+.+|||+|++++||||+
T Consensus 318 ~~~l~~lyg~~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv 396 (477)
T KOG0332|consen 318 YQALVNLYGLLTIG-QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDV 396 (477)
T ss_pred HHHHHHHHhhhhhh-heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccccc
Confidence 99999877766554 67899999999999999997 57899999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCC------CHHHHHHHHhccCCCCCccEEEEEEecCC-hHHHHHHHHHHHhc
Q 005313 485 KDIRVVVNYDFPT------GVEDYVHRIGRTGRAGATGVAYTFFGDQD-SRYASDLIKLLEGA 540 (703)
Q Consensus 485 p~v~~VI~~d~P~------s~~~yiQriGRagR~G~~g~~i~~~~~~d-~~~~~~l~~~l~~~ 540 (703)
+.|++|||||+|. +.+.|+|||||+||.|++|.++.|++..+ .+..+.|.+.+...
T Consensus 397 ~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 397 AQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred ceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 9999999999995 78999999999999999999999998664 45566777777543
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-49 Score=408.05 Aligned_cols=370 Identities=34% Similarity=0.580 Sum_probs=331.2
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 251 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLI 251 (703)
-+.+|++++|+++|++.+...||.+|+.+|+.||..+..|.|+++.+++|+|||.+|+++++..+... .....+|+
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~----~ke~qali 99 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS----VKETQALI 99 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc----hHHHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999887332 12347999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhc-CCCcEEEECHHHHHHHHHhccccccCcccEEEeccc
Q 005313 252 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID-RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~-~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH 330 (703)
++|++||++|+......++...+.++..+.|+.....+...+. ..++|+|+||+++.+++....+..+.++++|+||+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 9999999999999999999999999998888887764444444 458999999999999999888888889999999999
Q ss_pred ccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHH
Q 005313 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410 (703)
Q Consensus 331 ~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 410 (703)
.|+..+|..++..|+..++++.|++++|||.|.++..+..+++.+|+.+.+...+ +. .+.+.|.+..+...+|...|.
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~-lt-l~gikq~~i~v~k~~k~~~l~ 257 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE-LT-LEGIKQFYINVEKEEKLDTLC 257 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh-hh-hhheeeeeeeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999886644 33 456778877777777999999
Q ss_pred HHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccE
Q 005313 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV 489 (703)
Q Consensus 411 ~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~ 489 (703)
.+.+ .-...+|||++++.++.+...|. ..+.+.++|+++.+.+|+.+++.|+.|..+|||+|+.+++|||+..+..
T Consensus 258 dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~sl 334 (397)
T KOG0327|consen 258 DLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSL 334 (397)
T ss_pred HHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcce
Confidence 8888 23578999999999999999996 3688999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHHHH
Q 005313 490 VVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRD 550 (703)
Q Consensus 490 VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L~~ 550 (703)
||||++|...+.|+||+||+||.|.+|.++.++.+.+.+.+.++.+++.-...++|....+
T Consensus 335 vinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 335 VVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred eeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 9999999999999999999999999999999999999998888887776555555554443
No 32
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-48 Score=421.63 Aligned_cols=396 Identities=34% Similarity=0.541 Sum_probs=340.0
Q ss_pred HHHhcCCeEEcCCCCCCCCCCCcC----CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHH
Q 005313 155 AYRRRHEVTVSGDEVPPPFMSFDA----TGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 155 ~~~~~~~i~~~~~~~p~p~~sf~~----~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ll 230 (703)
..|+.+.+.+.|...|+|+.+|.+ +.+.+.+++++...+|..|+|+|++|+|.++..+++++|||||+|||++|++
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 456778899999999999999987 6788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC-CCCCCCEEEEEcCcHHHHHHHHHHHHHhc--CCCCceEEEeeCCCCCC-chhhhhcCCCcEEEECHHH
Q 005313 231 PGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFG--KSSRISCTCLYGGAPKG-PQLKDIDRGVDIVVATPGR 306 (703)
Q Consensus 231 p~l~~l~~~~~-~~~~g~~vLIl~PtreLa~Q~~~~~~k~~--~~~~i~v~~~~gg~~~~-~~~~~l~~g~dIlV~Tp~~ 306 (703)
|++.++..... ....+-+++||.|+++|+.|++.++.++. ..+.+.+.......... .........++|+|.||-+
T Consensus 193 Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~r 272 (593)
T KOG0344|consen 193 PILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR 272 (593)
T ss_pred HHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHH
Confidence 99999887542 11235689999999999999999999998 55555554443332111 1111222348999999999
Q ss_pred HHHHHHhcc--ccccCcccEEEecccccccC-CChHHHHHHHHHcC-CCceEEEEeccCcHHHHHHHHHhhcCceecccc
Q 005313 307 LNDILEMRR--ISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVP-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382 (703)
Q Consensus 307 L~~~l~~~~--~~l~~~~~IViDEaH~ml~~-gf~~~i~~il~~l~-~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~ 382 (703)
+..++.... +++..+.++|+||+|++.+. .|..++..|+..+. ++..+-+||||++..+++++...+.+...+.++
T Consensus 273 i~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg 352 (593)
T KOG0344|consen 273 IVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG 352 (593)
T ss_pred HHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe
Confidence 999888765 77889999999999999988 88899999988864 456677999999999999999999999988887
Q ss_pred cchhhhccccceEEE-EEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh--cCCceeEecCCCCHHHHHH
Q 005313 383 NVDELAANKAITQHI-EVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT--RQFGAAAIHGDKSQSERDY 459 (703)
Q Consensus 383 ~~~~~~~~~~i~~~~-~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~--~~~~~~~lhg~~~~~eR~~ 459 (703)
..... ...+.|.. .......|.-.+.+++...- .-++|||+.+++.|.+|...|. ..+.+.++|++.++.+|+.
T Consensus 353 ~~~sa--~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde 429 (593)
T KOG0344|consen 353 LRNSA--NETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDE 429 (593)
T ss_pred cchhH--hhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHH
Confidence 65433 33344444 44456678888888887653 3599999999999999999984 6788999999999999999
Q ss_pred HHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHh
Q 005313 460 VLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 539 (703)
Q Consensus 460 vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~ 539 (703)
+++.|+.|+++|||||++++||||+.++++|||||+|.+...|+|||||+||+|+.|.+|+||++.+..+.+.+...++.
T Consensus 430 ~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 430 TMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred HHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHH
Q 005313 540 AKQQVPRELRDMAS 553 (703)
Q Consensus 540 ~~~~v~~~L~~la~ 553 (703)
...+++.++..+..
T Consensus 510 sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 510 SGCEVPEKIMGIKK 523 (593)
T ss_pred cCCcchHHHHhhhh
Confidence 99999999988875
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.1e-48 Score=450.60 Aligned_cols=343 Identities=21% Similarity=0.268 Sum_probs=268.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 180 GFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 180 ~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
.|++++.++|.+.||.+||++|+++|+.+++++|+|+++|||||||++|++|++..+... .+.++|||+||+||+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-----~~~~aL~l~PtraLa 94 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-----PRATALYLAPTKALA 94 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-----CCcEEEEEcChHHHH
Confidence 488999999999999999999999999999999999999999999999999999988652 246899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc----cccccCcccEEEecccccccC
Q 005313 260 TQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR----RISLNQVSYLVLDEADRMLDM 335 (703)
Q Consensus 260 ~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~----~~~l~~~~~IViDEaH~ml~~ 335 (703)
.|+.+.++++. ..++++..+.|+... .+...+...++|||+||++|...+... ...++++++|||||||+|.+.
T Consensus 95 ~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~ 172 (742)
T TIGR03817 95 ADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV 172 (742)
T ss_pred HHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc
Confidence 99999999987 446787777777653 344556667899999999997533211 123788999999999999764
Q ss_pred CChHHHHHHHH-------HcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEec-------
Q 005313 336 GFEPQIRKIVK-------EVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA------- 401 (703)
Q Consensus 336 gf~~~i~~il~-------~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~------- 401 (703)
|...+..++. .++.++|+|++|||+++..+ ++..++..+..+ +.. +..... .. ....+..
T Consensus 173 -fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~-~~~~~~-~~-~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 173 -FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTE-DGSPRG-AR-TVALWEPPLTELTG 246 (742)
T ss_pred -cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECC-CCCCcC-ce-EEEEecCCcccccc
Confidence 6665544443 34667899999999987754 567777766543 211 111111 11 1111111
Q ss_pred ----------cchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc---------CCceeEecCCCCHHHHHHHHH
Q 005313 402 ----------PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR---------QFGAAAIHGDKSQSERDYVLN 462 (703)
Q Consensus 402 ----------~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~---------~~~~~~lhg~~~~~eR~~vl~ 462 (703)
..++...|..+++ .+.++||||+|++.++.++..|.+ ...+..+|+++++++|.++++
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred ccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 1133444555554 357999999999999999998764 246789999999999999999
Q ss_pred HHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecC--ChHHHHHHHHHHH
Q 005313 463 QFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ--DSRYASDLIKLLE 538 (703)
Q Consensus 463 ~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~--d~~~~~~l~~~l~ 538 (703)
+|++|++++||||+++++||||+++++||+|++|.+.+.|+||+||+||.|+.|.++++..+. |..+.....++++
T Consensus 324 ~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 324 ALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred HHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999888643 3334444444443
No 34
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-49 Score=411.82 Aligned_cols=360 Identities=37% Similarity=0.580 Sum_probs=331.6
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEE
Q 005313 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl 252 (703)
--.|+.++|+..+++++++.||..|||+|+..||.+|++++++..+-||+|||.||+||++..+.... ..+.++||+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---~~g~Ralil 96 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---QTGLRALIL 96 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---ccccceeec
Confidence 46799999999999999999999999999999999999999999999999999999999999988754 346799999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 253 ~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
+||++|+.|..+.++.+++.+.+++++++|+....+++..+..+.||||+||++++.+.-.-.+.++.+.|||+||+|++
T Consensus 97 sptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 97 SPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRL 176 (529)
T ss_pred cCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHH
Confidence 99999999999999999999999999999999999999999988999999999998877666688999999999999999
Q ss_pred ccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHH
Q 005313 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI 412 (703)
Q Consensus 333 l~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 412 (703)
..|||.+++.+++..++..+|+++||||+|+.+.++++.-+.+|..+.+.. +...+..+...++.+...+|...|+.+
T Consensus 177 femgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldv--etkise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 177 FEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDV--ETKISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeeh--hhhcchhhhhheeeeccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887543 233444556667788889999999999
Q ss_pred HHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEE
Q 005313 413 LRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV 491 (703)
Q Consensus 413 l~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI 491 (703)
+........+||||.++.+++.+...|. ..+.+..+++.+++..|..-++.|+.++..+||.||+++||+|||-.+.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 9888777789999999999999999998 468888999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHH
Q 005313 492 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLL 537 (703)
Q Consensus 492 ~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l 537 (703)
|||+|.+...|+||+||+.|+|..|.+|.|+..++..+..+|..++
T Consensus 335 nyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lfl 380 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFL 380 (529)
T ss_pred cccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhc
Confidence 9999999999999999999999999999999998888777766443
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.2e-46 Score=434.19 Aligned_cols=335 Identities=22% Similarity=0.329 Sum_probs=257.4
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 181 FPPELLREVHN-AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 181 l~~~l~~~l~~-~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
....+...++. .||..++|+|+++|+.++.++|+|+++|||+|||++|++|++.. ...+|||+|+++|+
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----------~GiTLVISPLiSLm 513 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----------PGITLVISPLVSLI 513 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----------CCcEEEEeCHHHHH
Confidence 33445544443 48999999999999999999999999999999999999998753 23799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhc------CCCcEEEECHHHHHH--HHHhc--cc-cccCcccEEEec
Q 005313 260 TQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID------RGVDIVVATPGRLND--ILEMR--RI-SLNQVSYLVLDE 328 (703)
Q Consensus 260 ~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~------~g~dIlV~Tp~~L~~--~l~~~--~~-~l~~~~~IViDE 328 (703)
.++...+.. .++....+.++....++...+. ..++|||+||++|.. .+... .+ ....+.+|||||
T Consensus 514 qDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDE 589 (1195)
T PLN03137 514 QDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDE 589 (1195)
T ss_pred HHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCc
Confidence 876666554 3578888888776554433322 358999999999863 22211 11 234588999999
Q ss_pred ccccccCC--ChHHHHHH--HHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccch
Q 005313 329 ADRMLDMG--FEPQIRKI--VKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD 404 (703)
Q Consensus 329 aH~ml~~g--f~~~i~~i--l~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~ 404 (703)
||++++|| |++.+..+ +....+..++++||||++..+.+.+...+.....+.+.. . ....++ .+.++....
T Consensus 590 AHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~--S-f~RpNL--~y~Vv~k~k 664 (1195)
T PLN03137 590 AHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ--S-FNRPNL--WYSVVPKTK 664 (1195)
T ss_pred chhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec--c-cCccce--EEEEeccch
Confidence 99999998 77877764 444445788999999999988876666554221111111 0 111122 222232222
Q ss_pred -hHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccC
Q 005313 405 -KHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGL 482 (703)
Q Consensus 405 -k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GI 482 (703)
....|..+++....+...||||.+++.|+.++..|. .++.+..+|++|++++|..+++.|..|+++|||||+++++||
T Consensus 665 k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGI 744 (1195)
T PLN03137 665 KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGI 744 (1195)
T ss_pred hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCC
Confidence 234566666655455689999999999999999997 478999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 483 DIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 483 DIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
|+|+|++||||++|.+++.|+|++|||||.|..+.|++|+...|......++
T Consensus 745 DkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 745 NKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877665554444
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=8.3e-48 Score=413.72 Aligned_cols=355 Identities=31% Similarity=0.501 Sum_probs=313.6
Q ss_pred cCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCC
Q 005313 165 SGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPR 244 (703)
Q Consensus 165 ~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~ 244 (703)
.+|..+.....|+++-|-.+++..|+..+|..|+++|..|||+++.+-|+||+|..|+|||++|.+.++..+....
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~---- 91 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS---- 91 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc----
Confidence 3455666778899999999999999999999999999999999999999999999999999999988877765422
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhcCC-CCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCccc
Q 005313 245 LGPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 323 (703)
Q Consensus 245 ~g~~vLIl~PtreLa~Q~~~~~~k~~~~-~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~ 323 (703)
..+.++||+|||||+.|+.+.+.+++.. .+++|.+..||+.......++.. |+|+|+||+++..+++.+.++...+++
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrl 170 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRL 170 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeE
Confidence 2468999999999999999999999875 57899999999988777666655 789999999999999999999999999
Q ss_pred EEEeccccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEecc
Q 005313 324 LVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP 402 (703)
Q Consensus 324 IViDEaH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~ 402 (703)
+||||||.+++ ..|..++..|++.||..+|++.+|||-|..+..++.++|.+|..+.....+.. -.-|.|++..+..
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~--L~GikQyv~~~~s 248 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQ--LFGIKQYVVAKCS 248 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCce--eechhheeeeccC
Confidence 99999999998 45999999999999999999999999999999999999999998877554422 2336666655543
Q ss_pred c--------hhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 005313 403 M--------DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLV 473 (703)
Q Consensus 403 ~--------~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILV 473 (703)
. .|.+.|..+++... -..+||||+....|+-++..|+ .++.|.++.|.|+|.+|..+++.++.-.++|||
T Consensus 249 ~nnsveemrlklq~L~~vf~~ip-y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILV 327 (980)
T KOG4284|consen 249 PNNSVEEMRLKLQKLTHVFKSIP-YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILV 327 (980)
T ss_pred CcchHHHHHHHHHHHHHHHhhCc-hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEE
Confidence 2 35666777776653 4588999999999999999998 689999999999999999999999999999999
Q ss_pred EcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 474 ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 474 aTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
+||+.+||||-++|++|||+|.|.+.+.|.|||||+||.|..|.+++|+.....
T Consensus 328 sTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 328 STDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred ecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999999976543
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.7e-45 Score=412.68 Aligned_cols=324 Identities=25% Similarity=0.374 Sum_probs=252.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 192 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 192 ~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
.||..++|+|.++|+.+++++|+++++|||+|||++|++|++.. +..+|||+|+++|+.|+.+.+..+
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----------~~~~lVi~P~~~L~~dq~~~l~~~-- 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----------DGITLVISPLISLMEDQVLQLKAS-- 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----------CCcEEEEecHHHHHHHHHHHHHHc--
Confidence 48999999999999999999999999999999999999998752 237899999999999998888764
Q ss_pred CCCceEEEeeCCCCCCch---hhhhcC-CCcEEEECHHHHHHHH-Hhccc-cccCcccEEEecccccccCC--ChHHHHH
Q 005313 272 SSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDIL-EMRRI-SLNQVSYLVLDEADRMLDMG--FEPQIRK 343 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~---~~~l~~-g~dIlV~Tp~~L~~~l-~~~~~-~l~~~~~IViDEaH~ml~~g--f~~~i~~ 343 (703)
++.+..+.+.....+. +..+.. ..+|+++||+++.... ....+ ...++++|||||||++++|+ |.+.+..
T Consensus 75 --gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 75 --GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 4666666666543322 222333 4899999999985432 11122 56789999999999999987 6676655
Q ss_pred H--HHHcCCCceEEEEeccCcHHHHHHHHHhhc--CceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCC
Q 005313 344 I--VKEVPARRQTLMYTATWPREVRKIAADLLV--NPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPG 419 (703)
Q Consensus 344 i--l~~l~~~~q~L~lSAT~p~~v~~l~~~~l~--~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~ 419 (703)
+ +....++.+++++|||+++.+...+...+. ++..+. .... ..++...+.. ........+..++....++
T Consensus 153 l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~-~s~~----r~nl~~~v~~-~~~~~~~~l~~~l~~~~~~ 226 (470)
T TIGR00614 153 LGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFC-TSFD----RPNLYYEVRR-KTPKILEDLLRFIRKEFKG 226 (470)
T ss_pred HHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEe-CCCC----CCCcEEEEEe-CCccHHHHHHHHHHHhcCC
Confidence 4 223335778999999999988766655542 232221 1111 1112211111 1123455566666655566
Q ss_pred CeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCC
Q 005313 420 SKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTG 498 (703)
Q Consensus 420 ~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s 498 (703)
.++||||+++++|+.+++.|. ..+.+..+|+++++++|..+++.|++|+++|||||+++++|||+|+|++||++++|.+
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s 306 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKS 306 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCC
Confidence 778999999999999999997 4688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHH
Q 005313 499 VEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIK 535 (703)
Q Consensus 499 ~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~ 535 (703)
++.|+||+||+||.|..+.|++|+...|....+.++.
T Consensus 307 ~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 307 MESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred HHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 9999999999999999999999999888776666554
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-46 Score=393.05 Aligned_cols=350 Identities=29% Similarity=0.459 Sum_probs=280.9
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHc---------CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 185 LLREVHNAGFSSPTPIQAQSWPIALQ---------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 185 l~~~l~~~g~~~p~piQ~~ai~~il~---------grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
+.+++.++++.+..|+|..++|.++. .+|+.|.||||||||++|.||+++.+.....+ --++|||+||
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~---~LRavVivPt 224 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVK---RLRAVVIVPT 224 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCcc---ceEEEEEeeH
Confidence 44458899999999999999999964 47999999999999999999999998774333 2489999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcC-----CCcEEEECHHHHHHHHH-hccccccCcccEEEecc
Q 005313 256 RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-----GVDIVVATPGRLNDILE-MRRISLNQVSYLVLDEA 329 (703)
Q Consensus 256 reLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-----g~dIlV~Tp~~L~~~l~-~~~~~l~~~~~IViDEa 329 (703)
++|+.|+++.|.+++..+++.|+.+.|..........+.. ..||+|+||++|.+++. ...++++++.|+|||||
T Consensus 225 r~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEA 304 (620)
T KOG0350|consen 225 RELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEA 304 (620)
T ss_pred HHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechH
Confidence 9999999999999999999999989888877666666543 24899999999999998 67899999999999999
Q ss_pred cccccCCChHHHHHHHHHcC----------------------------------CCceEEEEeccCcHHHHHHHHHhhcC
Q 005313 330 DRMLDMGFEPQIRKIVKEVP----------------------------------ARRQTLMYTATWPREVRKIAADLLVN 375 (703)
Q Consensus 330 H~ml~~gf~~~i~~il~~l~----------------------------------~~~q~L~lSAT~p~~v~~l~~~~l~~ 375 (703)
|+|++..|...+..++..+. +..+.|++|||+...-.++..--+..
T Consensus 305 DRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~ 384 (620)
T KOG0350|consen 305 DRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHI 384 (620)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCC
Confidence 99998766655554443321 22346777888766655555555555
Q ss_pred ceeccccc--chhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEe
Q 005313 376 PVQVNIGN--VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAI 448 (703)
Q Consensus 376 ~~~i~i~~--~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~l 448 (703)
|-.+.+.. ...+.....+...........|...+..++... +..++|+|+++...+..++..|+- .+.+-.+
T Consensus 385 Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~ 463 (620)
T KOG0350|consen 385 PRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEF 463 (620)
T ss_pred CceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchhhhh
Confidence 53322221 112222233333444444545666667777664 356999999999999999998871 4566678
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChH
Q 005313 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSR 528 (703)
Q Consensus 449 hg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~ 528 (703)
.|.++.+.|.+.++.|..|+++||||+|+++||||+.+|+.|||||+|.+...|+||+||++|+|+.|.||+++...+..
T Consensus 464 t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r 543 (620)
T KOG0350|consen 464 TGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKR 543 (620)
T ss_pred hhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 005313 529 YASDLIKLLE 538 (703)
Q Consensus 529 ~~~~l~~~l~ 538 (703)
...++++...
T Consensus 544 ~F~klL~~~~ 553 (620)
T KOG0350|consen 544 LFSKLLKKTN 553 (620)
T ss_pred HHHHHHHHhc
Confidence 8777766544
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.3e-44 Score=420.26 Aligned_cols=336 Identities=23% Similarity=0.313 Sum_probs=259.0
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 175 sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~-il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
.|++++|++.+++.+.+.||.+|+|+|.+|++. ++.++|+|++||||+|||++|+++++..+.. +.++|||+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-------~~kal~i~ 74 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-------GGKALYIV 74 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-------CCcEEEEe
Confidence 578889999999999999999999999999998 7789999999999999999999999988753 45899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccc
Q 005313 254 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml 333 (703)
|+++|+.|+++.++++.. .++++..++|+...... .....+|+|+||+++..++......++++++|||||+|++.
T Consensus 75 P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 75 PLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLID 150 (737)
T ss_pred ChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccC
Confidence 999999999999998753 47888888887654332 22347999999999998887655567899999999999999
Q ss_pred cCCChHHHHHHHHHc---CCCceEEEEeccCcHHHHHHHHHhhcCc--------eecccccchhhhccccceEEEEEecc
Q 005313 334 DMGFEPQIRKIVKEV---PARRQTLMYTATWPREVRKIAADLLVNP--------VQVNIGNVDELAANKAITQHIEVLAP 402 (703)
Q Consensus 334 ~~gf~~~i~~il~~l---~~~~q~L~lSAT~p~~v~~l~~~~l~~~--------~~i~i~~~~~~~~~~~i~~~~~~~~~ 402 (703)
+.++.+.++.++..+ .+..|+|++|||+++ ..++.. ++... +.+...... ............+..
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~-wl~~~~~~~~~rpv~l~~~v~~--~~~~~~~~~~~~~~~ 226 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELAD-WLDAELVDSEWRPIDLREGVFY--GGAIHFDDSQREVEV 226 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHH-HhCCCcccCCCCCCCCeeeEec--CCeeccccccccCCC
Confidence 888888887776554 567899999999975 233332 22211 111000000 000000000001111
Q ss_pred chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcC-------------------------------------Cce
Q 005313 403 MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-------------------------------------FGA 445 (703)
Q Consensus 403 ~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~-------------------------------------~~~ 445 (703)
..+...+..++.....+.++||||++++.|+.+++.|... .++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 227 PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 1112223333333345679999999999999988877531 368
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----ec-----CCCCHHHHHHHHhccCCCCCc-
Q 005313 446 AAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YD-----FPTGVEDYVHRIGRTGRAGAT- 515 (703)
Q Consensus 446 ~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~----~d-----~P~s~~~yiQriGRagR~G~~- 515 (703)
+++|+++++.+|+.+++.|++|.++|||||+++++|||+|.+++||+ || .|.+..+|+||+|||||.|.+
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~ 386 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDP 386 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 89999999999999999999999999999999999999999999997 66 588999999999999999865
Q ss_pred -cEEEEEEecC
Q 005313 516 -GVAYTFFGDQ 525 (703)
Q Consensus 516 -g~~i~~~~~~ 525 (703)
|.++++....
T Consensus 387 ~G~~ii~~~~~ 397 (737)
T PRK02362 387 YGEAVLLAKSY 397 (737)
T ss_pred CceEEEEecCc
Confidence 8888887654
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.9e-43 Score=408.23 Aligned_cols=320 Identities=24% Similarity=0.393 Sum_probs=249.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 192 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 192 ~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
.||..++|+|+++|+.+++++|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+.+.++.+
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----------~g~tlVisPl~sL~~dqv~~l~~~-- 88 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----------DGLTLVVSPLISLMKDQVDQLLAN-- 88 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----------CCCEEEEecHHHHHHHHHHHHHHc--
Confidence 49999999999999999999999999999999999999998753 136899999999999999988875
Q ss_pred CCCceEEEeeCCCCCCchhh---hhcC-CCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC--ChHHHHHH-
Q 005313 272 SSRISCTCLYGGAPKGPQLK---DIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG--FEPQIRKI- 344 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~---~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g--f~~~i~~i- 344 (703)
++.+.++.+......... .+.. ..+|+++||++|........+...++++|||||||++.+|+ |.+.+..+
T Consensus 89 --gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~ 166 (607)
T PRK11057 89 --GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALG 166 (607)
T ss_pred --CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHH
Confidence 455666655554333222 2222 47899999999874322223445578999999999999987 66666544
Q ss_pred --HHHcCCCceEEEEeccCcHHHHHHHHHhhc--CceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCC
Q 005313 345 --VKEVPARRQTLMYTATWPREVRKIAADLLV--NPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGS 420 (703)
Q Consensus 345 --l~~l~~~~q~L~lSAT~p~~v~~l~~~~l~--~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~ 420 (703)
...+ +..+++++|||++..+...+...+. ++.. .+.... ..++ .+.++....+...+..++... .+.
T Consensus 167 ~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~-~~~~~~----r~nl--~~~v~~~~~~~~~l~~~l~~~-~~~ 237 (607)
T PRK11057 167 QLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLI-QISSFD----RPNI--RYTLVEKFKPLDQLMRYVQEQ-RGK 237 (607)
T ss_pred HHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEE-EECCCC----CCcc--eeeeeeccchHHHHHHHHHhc-CCC
Confidence 3333 5688999999999887665544432 3322 121111 1112 222333334445555555543 457
Q ss_pred eEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCH
Q 005313 421 KIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGV 499 (703)
Q Consensus 421 kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~ 499 (703)
++||||+++++|+.+++.|. ..+.+..+|+++++++|..+++.|+.|+++|||||+++++|||+|+|++||+||+|.+.
T Consensus 238 ~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~ 317 (607)
T PRK11057 238 SGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (607)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCH
Confidence 89999999999999999997 46889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 500 EDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 500 ~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
+.|+||+||+||.|.++.|++|++..|....+.++
T Consensus 318 ~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 318 ESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred HHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999988766555443
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=6.6e-43 Score=417.18 Aligned_cols=341 Identities=21% Similarity=0.252 Sum_probs=247.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCC--CCCCCEEEEEcCcHHH
Q 005313 181 FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND--PRLGPTVLVLSPTREL 258 (703)
Q Consensus 181 l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~--~~~g~~vLIl~PtreL 258 (703)
|++.+.+.+.+ +|..|+|+|+++|+.+++++|+|++||||||||++|++|++..+...... ...++++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666554 79999999999999999999999999999999999999999887653221 1235689999999999
Q ss_pred HHHHHHHHHH-------hc----CCC-CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc--cccCcccE
Q 005313 259 ATQIQDEAVK-------FG----KSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI--SLNQVSYL 324 (703)
Q Consensus 259 a~Q~~~~~~k-------~~----~~~-~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~--~l~~~~~I 324 (703)
+.|+++.+.+ +. ... ++.+.+.+|+.......+.+.+.++|+|+||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9998875442 22 233 6788889999877766666777899999999999887764433 47889999
Q ss_pred EEecccccccCCChHHHHHH----HHHcCCCceEEEEeccCcHHHHHHHHHhhcC-----ceecccccchhhhccccceE
Q 005313 325 VLDEADRMLDMGFEPQIRKI----VKEVPARRQTLMYTATWPREVRKIAADLLVN-----PVQVNIGNVDELAANKAITQ 395 (703)
Q Consensus 325 ViDEaH~ml~~gf~~~i~~i----l~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~-----~~~i~i~~~~~~~~~~~i~~ 395 (703)
||||+|.+++..+...+..+ ....+...|+|++|||+++ ..+++..+... +..+.+.... ......+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~-~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDAR-FVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccC-CCccceEEE
Confidence 99999999877655544433 3334467899999999875 22333222111 1111110000 000000000
Q ss_pred E-----EEEeccchhHHHHHHHH-HhcCCCCeEEEEcCCHHHHHHHHHHHhcC-------CceeEecCCCCHHHHHHHHH
Q 005313 396 H-----IEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-------FGAAAIHGDKSQSERDYVLN 462 (703)
Q Consensus 396 ~-----~~~~~~~~k~~~L~~ll-~~~~~~~kvLVF~~s~~~a~~la~~L~~~-------~~~~~lhg~~~~~eR~~vl~ 462 (703)
. ............+...+ +....+.++||||+|++.|+.++..|.+. ..+.++||++++++|..+++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 0 00011111112222222 22234578999999999999999999752 56999999999999999999
Q ss_pred HHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCC-CCccEEEEEEec
Q 005313 463 QFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA-GATGVAYTFFGD 524 (703)
Q Consensus 463 ~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~-G~~g~~i~~~~~ 524 (703)
.|++|+++|||||+++++|||||++++||+++.|.+...|+||+||+||. +....++++...
T Consensus 335 ~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 335 KLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 99999999999999999999999999999999999999999999999987 444455555543
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1e-42 Score=402.54 Aligned_cols=321 Identities=24% Similarity=0.365 Sum_probs=255.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 192 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 192 ~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
.||.+++|+|.++|+.++.++|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+.+.++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----------~g~~lVisPl~sL~~dq~~~l~~~-- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----------KGLTVVISPLISLMKDQVDQLRAA-- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----------CCcEEEEcCCHHHHHHHHHHHHHc--
Confidence 59999999999999999999999999999999999999998742 236899999999999999988875
Q ss_pred CCCceEEEeeCCCCCCchh---hhhc-CCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC--ChHHHHHHH
Q 005313 272 SSRISCTCLYGGAPKGPQL---KDID-RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG--FEPQIRKIV 345 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~---~~l~-~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g--f~~~i~~il 345 (703)
++.+..+.++....+.. ..+. ..++|+++||++|........+...++++|||||||++.+|+ |++.+..+.
T Consensus 77 --gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~ 154 (591)
T TIGR01389 77 --GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLG 154 (591)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHH
Confidence 46666676665443322 2222 358999999999976444445566789999999999999877 777666553
Q ss_pred ---HHcCCCceEEEEeccCcHHHHHHHHHhhcCcee-cccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCe
Q 005313 346 ---KEVPARRQTLMYTATWPREVRKIAADLLVNPVQ-VNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSK 421 (703)
Q Consensus 346 ---~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~-i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~k 421 (703)
..++ ..++|++|||++..+...+...+..... +.+... ...++ .+.......+...+.+++.... +.+
T Consensus 155 ~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~----~r~nl--~~~v~~~~~~~~~l~~~l~~~~-~~~ 226 (591)
T TIGR01389 155 SLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITSF----DRPNL--RFSVVKKNNKQKFLLDYLKKHR-GQS 226 (591)
T ss_pred HHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC----CCCCc--EEEEEeCCCHHHHHHHHHHhcC-CCC
Confidence 3444 4459999999999888766666542211 111111 11112 2333344556667777776654 578
Q ss_pred EEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHH
Q 005313 422 IIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVE 500 (703)
Q Consensus 422 vLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~ 500 (703)
+||||++++.|+.+++.|. ..+.+..+|++|+.++|..+++.|.+|+++|||||+++++|||+|+|++||+|++|.+.+
T Consensus 227 ~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~ 306 (591)
T TIGR01389 227 GIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLE 306 (591)
T ss_pred EEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHH
Confidence 9999999999999999997 468899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 501 DYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 501 ~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
.|+|++||+||.|+.+.|++|+...|....+.++
T Consensus 307 ~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 307 SYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred HHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 9999999999999999999999887766554444
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=9.3e-42 Score=403.73 Aligned_cols=352 Identities=21% Similarity=0.259 Sum_probs=272.8
Q ss_pred CCHHHHHHHHHC-CCCCCcHHHHHHHHHHHcC------CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 181 FPPELLREVHNA-GFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 181 l~~~l~~~l~~~-g~~~p~piQ~~ai~~il~g------rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
.+..+++.+.+. +| +||++|++||+.++++ .|+|++++||+|||++|+++++..+.. +++++||+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-------g~qvlvLv 507 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-------GKQVAVLV 507 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-------CCeEEEEe
Confidence 445566666554 67 6999999999999985 689999999999999999999887754 46899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCc---hhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEEEecc
Q 005313 254 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~---~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEa 329 (703)
||++||.|+++.+++++...++.+..+++.....+ .+..+.. .++|||+||..| ...+.++++++|||||+
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEE 582 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecc
Confidence 99999999999999988888888888887765433 3334444 489999999533 24567889999999999
Q ss_pred cccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHH
Q 005313 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRL 409 (703)
Q Consensus 330 H~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L 409 (703)
|++ .......+..++.+.|+|+||||+.+....+....+.++..+...... ...+..++... ......
T Consensus 583 hrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~----R~~V~t~v~~~---~~~~i~ 650 (926)
T TIGR00580 583 QRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED----RLPVRTFVMEY---DPELVR 650 (926)
T ss_pred ccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC----ccceEEEEEec---CHHHHH
Confidence 995 344556677788889999999998766655544444454444332211 11122222211 111122
Q ss_pred HHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc---CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 005313 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTR---QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 486 (703)
Q Consensus 410 ~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~---~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~ 486 (703)
..+++....+.+++|||++++.++.+++.|++ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|+
T Consensus 651 ~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~ 730 (926)
T TIGR00580 651 EAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPN 730 (926)
T ss_pred HHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccccc
Confidence 23334445568999999999999999999986 567999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCC-CHHHHHHHHhccCCCCCccEEEEEEecCC--hHHHHHHHHHHHhccC---cccHHHHHHHHcCCC
Q 005313 487 IRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFGDQD--SRYASDLIKLLEGAKQ---QVPRELRDMASRGGG 557 (703)
Q Consensus 487 v~~VI~~d~P~-s~~~yiQriGRagR~G~~g~~i~~~~~~d--~~~~~~l~~~l~~~~~---~v~~~L~~la~r~~g 557 (703)
+++||+++.+. +..+|+||+||+||.++.|.|++++...+ .+...+.++.+++... -+.-..+||..||.|
T Consensus 731 v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~Rg~G 807 (926)
T TIGR00580 731 ANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEIRGAG 807 (926)
T ss_pred CCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCc
Confidence 99999999865 78899999999999999999999987643 3455556666666544 888889999998764
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5e-42 Score=404.59 Aligned_cols=336 Identities=21% Similarity=0.257 Sum_probs=260.0
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 175 sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~-il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
.|+++++++.+++.+.+.||..|+|+|.++++. ++.++|+|++||||+|||++|++|++..+.. .+.++|||+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~------~~~~~l~l~ 75 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR------EGGKAVYLV 75 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh------cCCeEEEEe
Confidence 577889999999999999999999999999986 7899999999999999999999999888754 135899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccc
Q 005313 254 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml 333 (703)
|+++|+.|+++.+.++. ..++.+..++|+...... ....++|+|+||+++..++......++++++|||||+|.+.
T Consensus 76 P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~ 151 (720)
T PRK00254 76 PLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIG 151 (720)
T ss_pred ChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccC
Confidence 99999999999998864 467888888888754332 22458999999999998887666668899999999999999
Q ss_pred cCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccc-------hhH
Q 005313 334 DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM-------DKH 406 (703)
Q Consensus 334 ~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~-------~k~ 406 (703)
+.++...+..++..+....|+|++|||+++ ..++.. ++.............+. ...+.+........ ...
T Consensus 152 ~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~~~rpv~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T PRK00254 152 SYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVSDWRPVKLR-KGVFYQGFLFWEDGKIERFPNSWE 228 (720)
T ss_pred CccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccCCCCCCcce-eeEecCCeeeccCcchhcchHHHH
Confidence 988999999999999999999999999975 344443 44322211100000000 00011111111111 011
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc----------------------------------CCceeEecCCC
Q 005313 407 RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR----------------------------------QFGAAAIHGDK 452 (703)
Q Consensus 407 ~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~----------------------------------~~~~~~lhg~~ 452 (703)
..+.+++ ..+.++||||++++.|+.++..|.+ ..++.++|+++
T Consensus 229 ~~~~~~i---~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 229 SLVYDAV---KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHH---HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 2233333 3467999999999999887765531 13589999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE-------ecCCC-CHHHHHHHHhccCCCC--CccEEEEEE
Q 005313 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN-------YDFPT-GVEDYVHRIGRTGRAG--ATGVAYTFF 522 (703)
Q Consensus 453 ~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~-------~d~P~-s~~~yiQriGRagR~G--~~g~~i~~~ 522 (703)
++++|..+++.|++|.++|||||+++++|||+|.+++||. +++|. ...+|+||+||+||.| ..|.++++.
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999994 44443 5779999999999975 568999888
Q ss_pred ecCC
Q 005313 523 GDQD 526 (703)
Q Consensus 523 ~~~d 526 (703)
...+
T Consensus 386 ~~~~ 389 (720)
T PRK00254 386 TTEE 389 (720)
T ss_pred cCcc
Confidence 7654
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.3e-40 Score=388.75 Aligned_cols=350 Identities=25% Similarity=0.327 Sum_probs=263.6
Q ss_pred HHHHHHHHH-CCCCCCcHHHHHHHHHHHcC------CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 183 PELLREVHN-AGFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 183 ~~l~~~l~~-~g~~~p~piQ~~ai~~il~g------rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
..+++.+.+ .+| +||++|+++|+.++++ .++|++++||||||++|++|++..+.. +.++|||+||
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-------g~q~lilaPT 319 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-------GYQAALMAPT 319 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEecc
Confidence 344444443 455 7999999999999987 379999999999999999999887754 5689999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEeeCCCCCC---chhhhhcCC-CcEEEECHHHHHHHHHhccccccCcccEEEecccc
Q 005313 256 RELATQIQDEAVKFGKSSRISCTCLYGGAPKG---PQLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331 (703)
Q Consensus 256 reLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~---~~~~~l~~g-~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ 331 (703)
++||.|+++.+++++...++.+.+++|+.... ..+..+..+ ++|+|+||+.|.+ .+.+.++++|||||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh
Confidence 99999999999999988899999999998643 334445554 9999999988744 44578899999999998
Q ss_pred cccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhc-cccceEEEEEeccchhHHHHH
Q 005313 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA-NKAITQHIEVLAPMDKHRRLE 410 (703)
Q Consensus 332 ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~-~~~i~~~~~~~~~~~k~~~L~ 410 (703)
+. ......+.......++|+||||+.+....+.. ..+.....+ ++... ...+... .+....+...+.
T Consensus 395 fg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i---~~~p~~r~~i~~~--~~~~~~~~~~~~ 462 (681)
T PRK10917 395 FG-----VEQRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVI---DELPPGRKPITTV--VIPDSRRDEVYE 462 (681)
T ss_pred hh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEE---ecCCCCCCCcEEE--EeCcccHHHHHH
Confidence 63 23334444455568899999997654433322 221111111 11111 1122222 222222333333
Q ss_pred HHHHhcCCCCeEEEEcCCH--------HHHHHHHHHHhcC---CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 005313 411 QILRSQEPGSKIIVFCSTK--------KMCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 479 (703)
Q Consensus 411 ~ll~~~~~~~kvLVF~~s~--------~~a~~la~~L~~~---~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~ 479 (703)
.+.+....+.+++|||+.. ..++.+++.|.+. +.+..+||+|++++|+.++++|++|+++|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 4444446678999999954 3455666666643 5699999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEecCCC-CHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHHHHHHHcCCC
Q 005313 480 RGLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGG 557 (703)
Q Consensus 480 ~GIDIp~v~~VI~~d~P~-s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L~~la~r~~g 557 (703)
+|||+|++++||+++.|. ....|.|++||+||.|++|.|++++.........+.++.+....+.+....+|+..|+.|
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~rg~g 621 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLELRGPG 621 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHhhCCCc
Confidence 999999999999999986 688999999999999999999999965555556677888888888887788888877653
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9.2e-41 Score=385.04 Aligned_cols=312 Identities=22% Similarity=0.262 Sum_probs=238.1
Q ss_pred CCCCCcHHHHHHHHHHHcCC-CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCC-EEEEEcCcHHHHHHHHHHHHHhc
Q 005313 193 GFSSPTPIQAQSWPIALQSR-DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGP-TVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~gr-dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~-~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
||. |||||+++|+.++.|+ ++++.+|||||||.+|.++++... . .. ..+ ++|+++|||||+.|+++.+++++
T Consensus 13 G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~---~~-~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 13 GYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I---GA-KVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred CCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c---cc-cccceEEEeCchHHHHHHHHHHHHHHH
Confidence 887 9999999999999998 577789999999997665444321 1 11 123 45557799999999999999988
Q ss_pred CCC-----------------------CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc-----------
Q 005313 271 KSS-----------------------RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI----------- 316 (703)
Q Consensus 271 ~~~-----------------------~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~----------- 316 (703)
+.. .+.+.+++||.....++..+..+++|||+|++.+ ..+.+
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg~~~~~~ 162 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSRLLFSGYGCGFKSR 162 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCCccccccccccccc
Confidence 754 4889999999999999999999999999996444 33333
Q ss_pred -----cccCcccEEEecccccccCCChHHHHHHHHHc--CCC---ceEEEEeccCcHHHHHHHHHhhcCceecccccchh
Q 005313 317 -----SLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV--PAR---RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDE 386 (703)
Q Consensus 317 -----~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l--~~~---~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~ 386 (703)
.+.++++||||||| ++++|...+..|+..+ ++. +|+|+||||++.++.++...++.++..+.+.. ..
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~-~~ 239 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK-KR 239 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc-cc
Confidence 26789999999999 7899999999999975 332 69999999999988888877777766554432 11
Q ss_pred hhccccceEEEEEeccchhHHHHHHHHHh--cCCCCeEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHH-----H
Q 005313 387 LAANKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERD-----Y 459 (703)
Q Consensus 387 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~--~~~~~kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~-----~ 459 (703)
. ....+.+.+ ......|...+...+.. ...+.++||||+|++.|+.+++.|.+. ....+||+|++.+|+ .
T Consensus 240 l-~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~-g~~lLHG~m~q~dR~~~~~~~ 316 (844)
T TIGR02621 240 L-AAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE-KFELLTGTLRGAERDDLVKKE 316 (844)
T ss_pred c-cccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc-CCeEeeCCCCHHHHhhHHHHH
Confidence 2 122233332 23333343333222211 234578999999999999999999753 338999999999999 7
Q ss_pred HHHHHhc----CC-------CcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCcc-EEEEEEe
Q 005313 460 VLNQFRA----GR-------SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATG-VAYTFFG 523 (703)
Q Consensus 460 vl~~F~~----G~-------~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g-~~i~~~~ 523 (703)
+++.|++ ++ .+|||||+++++||||+. ++||++..| .+.|+||+||++|.|+.+ ..++++.
T Consensus 317 il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 317 IFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred HHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 8999987 44 689999999999999986 888887766 799999999999999853 3355553
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.8e-40 Score=398.88 Aligned_cols=346 Identities=21% Similarity=0.231 Sum_probs=267.8
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHH
Q 005313 187 REVHNAGFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 260 (703)
Q Consensus 187 ~~l~~~g~~~p~piQ~~ai~~il~g------rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~ 260 (703)
+......| .||++|++||+.++.+ +|+|++++||+|||.+|+.+++..+.. ++++|||+||++||.
T Consensus 592 ~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-------g~qvlvLvPT~eLA~ 663 (1147)
T PRK10689 592 LFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-------HKQVAVLVPTTLLAQ 663 (1147)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-------CCeEEEEeCcHHHHH
Confidence 33455566 7999999999999987 799999999999999999888776543 568999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEeeCCCCCCchhhh---hcC-CCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC
Q 005313 261 QIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD---IDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336 (703)
Q Consensus 261 Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g 336 (703)
|+++.+++.....++.+.++++.....++... +.. .++|||+||+.|. ..+.+.++++|||||+|++ +
T Consensus 664 Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf---G 735 (1147)
T PRK10689 664 QHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF---G 735 (1147)
T ss_pred HHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc---c
Confidence 99999998877777888888887765554433 333 5899999997542 3456788999999999997 3
Q ss_pred ChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhc
Q 005313 337 FEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQ 416 (703)
Q Consensus 337 f~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~ 416 (703)
+ .....+..++.++|+|+||||+.+.+..++...+.++..+....... ..+...+..... ......++...
T Consensus 736 ~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r----~~v~~~~~~~~~---~~~k~~il~el 806 (1147)
T PRK10689 736 V--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR----LAVKTFVREYDS---LVVREAILREI 806 (1147)
T ss_pred h--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC----CCceEEEEecCc---HHHHHHHHHHH
Confidence 2 23455677888999999999988777777777777776654422211 122222222221 11223334444
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhcC---CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEe
Q 005313 417 EPGSKIIVFCSTKKMCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNY 493 (703)
Q Consensus 417 ~~~~kvLVF~~s~~~a~~la~~L~~~---~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~ 493 (703)
..+++++|||++++.++.+++.|.+. +.+.++||+|++++|++++++|++|+++|||||+++++|||||++++||..
T Consensus 807 ~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 807 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe
Confidence 45678999999999999999999864 579999999999999999999999999999999999999999999999965
Q ss_pred cCC-CCHHHHHHHHhccCCCCCccEEEEEEecCC--hHHHHHHHHHHHhccC---cccHHHHHHHHcCCC
Q 005313 494 DFP-TGVEDYVHRIGRTGRAGATGVAYTFFGDQD--SRYASDLIKLLEGAKQ---QVPRELRDMASRGGG 557 (703)
Q Consensus 494 d~P-~s~~~yiQriGRagR~G~~g~~i~~~~~~d--~~~~~~l~~~l~~~~~---~v~~~L~~la~r~~g 557 (703)
+.. .+..+|+|++||+||.++.|.|++++...+ ...+.+-++.+++... -+...++||..||.|
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g 956 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCc
Confidence 442 366789999999999999999998885432 3445555566666555 888899999998764
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=8.9e-41 Score=392.06 Aligned_cols=334 Identities=21% Similarity=0.308 Sum_probs=251.0
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 175 sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
.|.+++|++.+++.+.+.+|. ++++|.++++.++++++++++||||+|||++++++++..+.. +.++|||+|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-------~~k~v~i~P 73 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-------GLKSIYIVP 73 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-------CCcEEEEec
Confidence 467788999999999998886 999999999999999999999999999999999998887754 358999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccccc
Q 005313 255 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 334 (703)
Q Consensus 255 treLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~ 334 (703)
+++|+.|+++++.++. ..++.+...+|+...... ....++|+|+||+++..++......+.++++|||||+|++.+
T Consensus 74 ~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 74 LRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred hHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccC
Confidence 9999999999998864 457778778777644322 224579999999999888876666688999999999999988
Q ss_pred CCChHHHHHHHHH---cCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceE-EEEEeccch-hHHHH
Q 005313 335 MGFEPQIRKIVKE---VPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ-HIEVLAPMD-KHRRL 409 (703)
Q Consensus 335 ~gf~~~i~~il~~---l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~-~~~~~~~~~-k~~~L 409 (703)
..+...+..++.. +.+..|+|++|||+++ ..++.. ++....... ..........+.. ......... ....+
T Consensus 150 ~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~~~~--~~r~vpl~~~i~~~~~~~~~~~~~~~~~~ 225 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASLIKS--NFRPVPLKLGILYRKRLILDGYERSQVDI 225 (674)
T ss_pred CCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCccCC--CCCCCCeEEEEEecCeeeecccccccccH
Confidence 8888777777554 4577899999999975 344443 333221110 0000000000000 000011111 11112
Q ss_pred HHHHHh-cCCCCeEEEEcCCHHHHHHHHHHHhcC--------------------------CceeEecCCCCHHHHHHHHH
Q 005313 410 EQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQ--------------------------FGAAAIHGDKSQSERDYVLN 462 (703)
Q Consensus 410 ~~ll~~-~~~~~kvLVF~~s~~~a~~la~~L~~~--------------------------~~~~~lhg~~~~~eR~~vl~ 462 (703)
..++.. ...++++||||++++.|+.++..|.+. .++..+|+++++++|..+++
T Consensus 226 ~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 226 NSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred HHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 333333 345679999999999999999888532 25788999999999999999
Q ss_pred HHhcCCCcEEEEcccccccCCCCCccEEEEecC---------CCCHHHHHHHHhccCCCCC--ccEEEEEEecC
Q 005313 463 QFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF---------PTGVEDYVHRIGRTGRAGA--TGVAYTFFGDQ 525 (703)
Q Consensus 463 ~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~---------P~s~~~yiQriGRagR~G~--~g~~i~~~~~~ 525 (703)
.|++|.++|||||+++++|||+|...+|| .+. |.+..+|.||+||+||.|. .|.+++++...
T Consensus 306 ~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999865554 332 4588999999999999985 56677776543
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=4.6e-40 Score=381.58 Aligned_cols=350 Identities=23% Similarity=0.306 Sum_probs=261.1
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHH
Q 005313 184 ELLREVHNAGFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE 257 (703)
Q Consensus 184 ~l~~~l~~~g~~~p~piQ~~ai~~il~g------rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Ptre 257 (703)
.+.+.+...+| +||++|+++|+.++.+ .+.|++++||||||++|+++++..+.. +.++|||+||++
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-------g~qvlilaPT~~ 295 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-------GYQVALMAPTEI 295 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-------CCcEEEECCHHH
Confidence 34445566678 7999999999999976 258999999999999999999888754 568999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEeeCCCCCCc---hhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEEEecccccc
Q 005313 258 LATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 258 La~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~---~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml 333 (703)
||.|+++.+++++...++.+.+++|+..... .+..+.. .++|||+|+..|.+ .+.+.++++|||||+|++.
T Consensus 296 LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 296 LAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhcc
Confidence 9999999999999888999999999876544 3444444 48999999998754 4557889999999999863
Q ss_pred cCCChHHHHHHHHHcC--CCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhc-cccceEEEEEeccchhHHHHH
Q 005313 334 DMGFEPQIRKIVKEVP--ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA-NKAITQHIEVLAPMDKHRRLE 410 (703)
Q Consensus 334 ~~gf~~~i~~il~~l~--~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~-~~~i~~~~~~~~~~~k~~~L~ 410 (703)
. .+...+..... ...++|+||||+.+....+. ...+ ..+.+ ...... ...+... .+....+...+.
T Consensus 371 ~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~-l~~~~--i~~~p~~r~~i~~~--~~~~~~~~~~~~ 439 (630)
T TIGR00643 371 V----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGD-LDTSI--IDELPPGRKPITTV--LIKHDEKDIVYE 439 (630)
T ss_pred H----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCC-cceee--eccCCCCCCceEEE--EeCcchHHHHHH
Confidence 2 22223333332 26789999999755433222 1111 11111 111111 1112222 222333333334
Q ss_pred HHHHhcCCCCeEEEEcCCH--------HHHHHHHHHHhc---CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 005313 411 QILRSQEPGSKIIVFCSTK--------KMCDQLARNLTR---QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 479 (703)
Q Consensus 411 ~ll~~~~~~~kvLVF~~s~--------~~a~~la~~L~~---~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~ 479 (703)
.+.+....+.+++|||+.. ..++.+++.|.+ .+.+..+||+|++++|+.++++|++|+++|||||++++
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 519 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE 519 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee
Confidence 4444445678999999875 445666666664 46799999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEecCCC-CHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHHHHHHHcCCC
Q 005313 480 RGLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGG 557 (703)
Q Consensus 480 ~GIDIp~v~~VI~~d~P~-s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L~~la~r~~g 557 (703)
+|||+|++++||+++.|. +...|.|++||+||.|++|.|++++.........+.++++....+.+.....|+..|+.|
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~Rg~g 598 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLELRGPG 598 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhcCCCc
Confidence 999999999999999986 788999999999999999999999955455555566788888888888888888887643
No 50
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-42 Score=333.60 Aligned_cols=334 Identities=30% Similarity=0.549 Sum_probs=285.5
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
.-|.++-|.|++++++..+||..|..+|.+|||...-|-|++++|..|.|||.+|++..++.+.-... ...+|++|
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g----~vsvlvmc 117 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG----QVSVLVMC 117 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC----eEEEEEEe
Confidence 34667779999999999999999999999999999999999999999999999999888777643221 35899999
Q ss_pred CcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313 254 PTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
+|||||-|+.++..+|.+.. .+++.+.+||.........+.+-++|+|+||++++.++..+.+++++++.+||||||.|
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 99999999999988887654 57899999999988888888888899999999999999999999999999999999998
Q ss_pred ccC-CChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHH
Q 005313 333 LDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411 (703)
Q Consensus 333 l~~-gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 411 (703)
++. ..+..+++|+...|...|+++||||++++++..+++++.+|..+.+.+...+ .-..+.|++..+.+.+|...|.+
T Consensus 198 le~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KL-tLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 198 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKL-TLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhh-hhhhHHHHHHhhhhhhhhhhhhh
Confidence 753 3577899999999999999999999999999999999999999988664443 44557788888888899988888
Q ss_pred HHHhcCCCCeEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEE
Q 005313 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV 491 (703)
Q Consensus 412 ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI 491 (703)
+|...+- ..++||+.+..... | ..+ ||||+++.+|+||..++.||
T Consensus 277 LLd~LeF-NQVvIFvKsv~Rl~------------------------------f---~kr-~vat~lfgrgmdiervNi~~ 321 (387)
T KOG0329|consen 277 LLDVLEF-NQVVIFVKSVQRLS------------------------------F---QKR-LVATDLFGRGMDIERVNIVF 321 (387)
T ss_pred hhhhhhh-cceeEeeehhhhhh------------------------------h---hhh-hHHhhhhccccCcccceeee
Confidence 8887654 57899988765510 2 123 89999999999999999999
Q ss_pred EecCCCCHHHHHHHHhccCCCCCccEEEEEEecC-ChHHHHHHHHHHHhccCcccHH
Q 005313 492 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRE 547 (703)
Q Consensus 492 ~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~-d~~~~~~l~~~l~~~~~~v~~~ 547 (703)
|||+|.+.+.|+||++|+||.|.+|.+++|+... +.+++..+..-++-...++|++
T Consensus 322 NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 322 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred ccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 9999999999999999999999999999999754 5555566665555555556555
No 51
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.2e-39 Score=356.29 Aligned_cols=323 Identities=27% Similarity=0.427 Sum_probs=255.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
||..+++-|+++|..+++++|++++.|||.||++||.||++.. . | .+|||+|..+|.+.+.+.++..+
T Consensus 14 Gy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~-------G-~TLVVSPLiSLM~DQV~~l~~~G-- 81 (590)
T COG0514 14 GYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--E-------G-LTLVVSPLISLMKDQVDQLEAAG-- 81 (590)
T ss_pred CccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--C-------C-CEEEECchHHHHHHHHHHHHHcC--
Confidence 8999999999999999999999999999999999999998775 1 2 78999999999999999988864
Q ss_pred CCceEEEeeCCCCCCch---hhhhcCC-CcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC--ChHHHHHHHH
Q 005313 273 SRISCTCLYGGAPKGPQ---LKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG--FEPQIRKIVK 346 (703)
Q Consensus 273 ~~i~v~~~~gg~~~~~~---~~~l~~g-~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g--f~~~i~~il~ 346 (703)
+.+.++.......+. +..+..+ .++++.+||+|+.-.....+.-..+.++||||||++.+|| |++.+..+-.
T Consensus 82 --i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~ 159 (590)
T COG0514 82 --IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGR 159 (590)
T ss_pred --ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHH
Confidence 666666655444332 3334443 8999999999976544444445678899999999999998 9998887744
Q ss_pred ---HcCCCceEEEEeccCcHHHHHHHHHhhcCce-ecccccchhhhccccceEEEEEeccchhHHHHHHHHH-hcCCCCe
Q 005313 347 ---EVPARRQTLMYTATWPREVRKIAADLLVNPV-QVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILR-SQEPGSK 421 (703)
Q Consensus 347 ---~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~-~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~-~~~~~~k 421 (703)
.++ +..++.+|||.++.+...+...|.... .+.+..++. .++... +....+-...+..+.. .......
T Consensus 160 l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR----pNi~~~--v~~~~~~~~q~~fi~~~~~~~~~~ 232 (590)
T COG0514 160 LRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR----PNLALK--VVEKGEPSDQLAFLATVLPQLSKS 232 (590)
T ss_pred HHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC----chhhhh--hhhcccHHHHHHHHHhhccccCCC
Confidence 344 778999999999988877766654322 222222221 111111 1111111222223332 2344567
Q ss_pred EEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHH
Q 005313 422 IIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVE 500 (703)
Q Consensus 422 vLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~ 500 (703)
.||||.|++.++.+++.|.+ ++.+..+|++|+.++|+.+.++|..++++|||||.++++|||.|+|++|||||+|.|++
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 89999999999999999985 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHH
Q 005313 501 DYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKL 536 (703)
Q Consensus 501 ~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~ 536 (703)
.|+|-+||+||.|....|++|+.+.|....+.+++.
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999997766655554
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=362.76 Aligned_cols=338 Identities=24% Similarity=0.278 Sum_probs=264.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhc-cCCCCCCCEEEEEcCcHHHH
Q 005313 181 FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRC-RNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 181 l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~-~~~~~~g~~vLIl~PtreLa 259 (703)
|++.+.+.+... |..||+.|.+||+.+.+|+|+|++||||||||+++++|++..+.+. ...+..+..+|+|+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 788888888887 9999999999999999999999999999999999999999999886 34444567999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc--cccccCcccEEEecccccccCCC
Q 005313 260 TQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RISLNQVSYLVLDEADRMLDMGF 337 (703)
Q Consensus 260 ~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~--~~~l~~~~~IViDEaH~ml~~gf 337 (703)
..+...++.++...++.+.+-+|+++..+..+.+.+.+||+|+||++|.-++... .-.+.++.+|||||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 9999999999999999999999999988888888889999999999998777643 23478999999999999876554
Q ss_pred hHHHH----HHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccc------hhHH
Q 005313 338 EPQIR----KIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM------DKHR 407 (703)
Q Consensus 338 ~~~i~----~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~------~k~~ 407 (703)
..++. .+....+ +.|.|++|||.. +..+.++.+........+.... ..+.....+...... .-..
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~---~~k~~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVS---AAKKLEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcc---cCCcceEEEEecCCccccccchhHH
Confidence 44433 3333334 899999999976 3333343333332111111111 111111111111111 1112
Q ss_pred HHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcC--CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 005313 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ--FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK 485 (703)
Q Consensus 408 ~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~--~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp 485 (703)
.+..+.........+|||+||+..++.++..|++. ..+.++||.++.++|..++++|++|+++.+|||+.++-|||+.
T Consensus 242 ~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 242 LYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 22333333334458999999999999999999875 5899999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHHHHHHHHhccCCC-CCccEEEEEEec
Q 005313 486 DIRVVVNYDFPTGVEDYVHRIGRTGRA-GATGVAYTFFGD 524 (703)
Q Consensus 486 ~v~~VI~~d~P~s~~~yiQriGRagR~-G~~g~~i~~~~~ 524 (703)
+++.||++..|.++..++||+||+|+. +....++++..+
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999875 455666666544
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2e-38 Score=384.32 Aligned_cols=291 Identities=25% Similarity=0.304 Sum_probs=218.8
Q ss_pred EEecCCChHHHHHHHHHHHHHhhccC------CCCCCCEEEEEcCcHHHHHHHHHHHHHhc------------CCCCceE
Q 005313 216 AIAKTGSGKTLGYLLPGFIHLKRCRN------DPRLGPTVLVLSPTRELATQIQDEAVKFG------------KSSRISC 277 (703)
Q Consensus 216 v~ApTGsGKTla~llp~l~~l~~~~~------~~~~g~~vLIl~PtreLa~Q~~~~~~k~~------------~~~~i~v 277 (703)
|+||||||||++|++|++..+..... ....+.++|||+|+++|+.|+.+.+++.. ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999998865321 11235799999999999999998886521 1246888
Q ss_pred EEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc-cccccCcccEEEecccccccCCC----hHHHHHHHHHcCCCc
Q 005313 278 TCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEADRMLDMGF----EPQIRKIVKEVPARR 352 (703)
Q Consensus 278 ~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~-~~~l~~~~~IViDEaH~ml~~gf----~~~i~~il~~l~~~~ 352 (703)
...+|+.+..++.+.+.+.++|||+||++|..++..+ ...++++++|||||+|.|++..+ ...+..|...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8999999887777777778999999999999887643 34588999999999999987543 345566666667789
Q ss_pred eEEEEeccCcHHHHHHHHHhhcC--ceecccccchhhhccccceEEEEEeccch---------------------hHHHH
Q 005313 353 QTLMYTATWPREVRKIAADLLVN--PVQVNIGNVDELAANKAITQHIEVLAPMD---------------------KHRRL 409 (703)
Q Consensus 353 q~L~lSAT~p~~v~~l~~~~l~~--~~~i~i~~~~~~~~~~~i~~~~~~~~~~~---------------------k~~~L 409 (703)
|+|++|||+++ .++++ +++.. ++.+.. ... .....+...+ ...+.. .....
T Consensus 161 QrIgLSATI~n-~eevA-~~L~g~~pv~Iv~-~~~--~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVA-AFLGGDRPVTVVN-PPA--MRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred eEEEEEeeCCC-HHHHH-HHhcCCCCEEEEC-CCC--CcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHH
Confidence 99999999986 34554 44432 333311 111 1111111111 111100 00111
Q ss_pred HHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcCC----------------------------------ceeEecCCCCHH
Q 005313 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQF----------------------------------GAAAIHGDKSQS 455 (703)
Q Consensus 410 ~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~~----------------------------------~~~~lhg~~~~~ 455 (703)
..++.....+.++||||||++.|+.++..|++.+ .+.+|||+++++
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 2334434456789999999999999999887421 256899999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCC
Q 005313 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA 512 (703)
Q Consensus 456 eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~ 512 (703)
+|..+++.|++|++++||||+++++||||++|++||+++.|.++.+|+||+||+||.
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999997
No 54
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=8.2e-37 Score=345.96 Aligned_cols=347 Identities=17% Similarity=0.187 Sum_probs=236.5
Q ss_pred CHHHHHhcCCeEEcCCCCCCCCCCCc---CCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHH
Q 005313 152 SSEAYRRRHEVTVSGDEVPPPFMSFD---ATGFPPELLREVHNAG--FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTL 226 (703)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~p~p~~sf~---~~~l~~~l~~~l~~~g--~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTl 226 (703)
...++.+++.+...-+ +.....+ ...|...+.......+ ...|++||+++++.++.+++.++++|||+|||+
T Consensus 68 ~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~ 144 (501)
T PHA02558 68 QLKKFAKNRGYSIWVD---PRIEENEDISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSL 144 (501)
T ss_pred HHHHHHHhcCCeEecC---cccccCCCCCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHH
Confidence 3446777777665322 2222222 1222233333222222 458999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHH
Q 005313 227 GYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGR 306 (703)
Q Consensus 227 a~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~ 306 (703)
++...+...+.. ...++|||+||++|+.||.+.++++.......+..+.++.... ...+|+|+|+++
T Consensus 145 i~~~l~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qs 211 (501)
T PHA02558 145 IQYLLSRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQS 211 (501)
T ss_pred HHHHHHHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHH
Confidence 765432222222 1238999999999999999999998765445555666665432 236899999999
Q ss_pred HHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHH-HhhcCceecccccch
Q 005313 307 LNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAA-DLLVNPVQVNIGNVD 385 (703)
Q Consensus 307 L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~-~~l~~~~~i~i~~~~ 385 (703)
|.+... ..++++++|||||||++.. ..+..++..+++.+++++||||+.+....... ..+..++...+.. .
T Consensus 212 l~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~-~ 283 (501)
T PHA02558 212 AVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTT-S 283 (501)
T ss_pred Hhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhCCceEEecH-H
Confidence 976442 2467899999999999864 45677777787788999999998653321111 0111111111110 0
Q ss_pred hhhcccc-------------------------ceEEEE-EeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHH
Q 005313 386 ELAANKA-------------------------ITQHIE-VLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARN 438 (703)
Q Consensus 386 ~~~~~~~-------------------------i~~~~~-~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~ 438 (703)
++..... +.+.+. ......+...+..++... ..+.++||||..+++++.|++.
T Consensus 284 ~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~ 363 (501)
T PHA02558 284 QLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEM 363 (501)
T ss_pred HHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHH
Confidence 1000000 000000 011112223333333322 3457899999999999999999
Q ss_pred Hhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCcc
Q 005313 439 LTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT-DVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATG 516 (703)
Q Consensus 439 L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaT-dv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g 516 (703)
|++ .+.+..+||++++++|+.+++.|++++..||||| +++++|+|+|++++||+++++.+...|+||+||++|.+..+
T Consensus 364 L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 364 LKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred HHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 985 6789999999999999999999999999999998 89999999999999999999999999999999999987655
Q ss_pred EEEEEE
Q 005313 517 VAYTFF 522 (703)
Q Consensus 517 ~~i~~~ 522 (703)
...+++
T Consensus 444 ~~~~i~ 449 (501)
T PHA02558 444 SIATVW 449 (501)
T ss_pred ceEEEE
Confidence 433333
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.6e-37 Score=352.70 Aligned_cols=310 Identities=19% Similarity=0.260 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCChHHHH---------HHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 199 PIQAQSWPIALQSRDIVAIAKTGSGKTLG---------YLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 199 piQ~~ai~~il~grdvlv~ApTGsGKTla---------~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
.+|+++++.+++++++|++|+||+|||.+ |+++.+..+.... ......+++|++||+|||.|+...+.+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-PNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-cccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999986 3344444443211 0112458999999999999999988775
Q ss_pred cCC---CCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHH
Q 005313 270 GKS---SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK 346 (703)
Q Consensus 270 ~~~---~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~ 346 (703)
... .++.+.+.+|+... .+.....+..+|+|+|++.. ...+.++++|||||||++..++ ..+..++.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk 315 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVAR 315 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHHH
Confidence 433 34667788888763 22222233679999996521 1247789999999999998765 44555555
Q ss_pred HcC-CCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEec----------cchhHHHHHHHHHh
Q 005313 347 EVP-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA----------PMDKHRRLEQILRS 415 (703)
Q Consensus 347 ~l~-~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~----------~~~k~~~L~~ll~~ 415 (703)
.+. ..+|+|+||||++.++..+ ..++.++..+.+... ....+.+++.... ...+...+..+.+.
T Consensus 316 ~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~ 390 (675)
T PHA02653 316 KHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKY 390 (675)
T ss_pred HhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC----cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHh
Confidence 443 4469999999999888766 678888877766421 1122333332111 11222223333222
Q ss_pred c-CCCCeEEEEcCCHHHHHHHHHHHhc---CCceeEecCCCCHHHHHHHHHHH-hcCCCcEEEEcccccccCCCCCccEE
Q 005313 416 Q-EPGSKIIVFCSTKKMCDQLARNLTR---QFGAAAIHGDKSQSERDYVLNQF-RAGRSPVLVATDVAARGLDIKDIRVV 490 (703)
Q Consensus 416 ~-~~~~kvLVF~~s~~~a~~la~~L~~---~~~~~~lhg~~~~~eR~~vl~~F-~~G~~~ILVaTdv~~~GIDIp~v~~V 490 (703)
. ..++.+||||+++++|+.+++.|.+ .+.+..+||++++. ++++++| ++|+.+|||||+++++|||||+|++|
T Consensus 391 ~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 391 TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHV 468 (675)
T ss_pred hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEE
Confidence 2 2346899999999999999999985 47899999999975 5667777 78999999999999999999999999
Q ss_pred EEec---CCC---------CHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 491 VNYD---FPT---------GVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 491 I~~d---~P~---------s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
|+++ .|. |.+.|+||+||+||. ++|.|+.|+++.+.
T Consensus 469 ID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 469 YDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 9998 554 888999999999999 88999999987653
No 56
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2e-36 Score=366.27 Aligned_cols=296 Identities=22% Similarity=0.297 Sum_probs=232.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
|+ .|+++|+++++.++.++|++++||||+|||+ |+++++..+.. .++++|||+||++|+.|+.+.+++++..
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~------~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK------KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh------cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 56 8999999999999999999999999999996 55555544432 2568999999999999999999999988
Q ss_pred CCceEEEeeCCCCC-----CchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEEEeccccccc-----------C
Q 005313 273 SRISCTCLYGGAPK-----GPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-----------M 335 (703)
Q Consensus 273 ~~i~v~~~~gg~~~-----~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~-----------~ 335 (703)
.++.+..++++... ..+...+.. .++|+|+||++|.+.+. .+....+++|||||||+|++ +
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 88887777766532 223344443 58999999999998776 45566799999999999996 6
Q ss_pred CCh-HHHHHHHHHcCC------------------------CceEEEEeccCcHH-HHHHHHHhhcCceecccccchhhhc
Q 005313 336 GFE-PQIRKIVKEVPA------------------------RRQTLMYTATWPRE-VRKIAADLLVNPVQVNIGNVDELAA 389 (703)
Q Consensus 336 gf~-~~i~~il~~l~~------------------------~~q~L~lSAT~p~~-v~~l~~~~l~~~~~i~i~~~~~~~~ 389 (703)
||. ..+..++..++. ..|+|++|||+++. +.. .++.+...+.+..... .
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~--~ 302 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVF--Y 302 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccc--c
Confidence 785 677777777654 68999999999753 432 1233333344433221 2
Q ss_pred cccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHH---HHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHh
Q 005313 390 NKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKM---CDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFR 465 (703)
Q Consensus 390 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~---a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~ 465 (703)
..++.+.+.... ++...|..+++... ..+||||++++. ++.+++.|.. ++.+..+||++ +..+++|+
T Consensus 303 ~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~ 373 (1176)
T PRK09401 303 LRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE 373 (1176)
T ss_pred cCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH
Confidence 234555555443 56777888887654 479999999776 9999999984 79999999999 23459999
Q ss_pred cCCCcEEEE----cccccccCCCCC-ccEEEEecCCC------CHHHHHHHHhccCCC
Q 005313 466 AGRSPVLVA----TDVAARGLDIKD-IRVVVNYDFPT------GVEDYVHRIGRTGRA 512 (703)
Q Consensus 466 ~G~~~ILVa----Tdv~~~GIDIp~-v~~VI~~d~P~------s~~~yiQriGRagR~ 512 (703)
+|+++|||| |++++||||+|+ |++||||++|. ..+.|.|++||+...
T Consensus 374 ~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 374 EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 999999999 699999999999 89999999998 678899999999744
No 57
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.4e-36 Score=318.53 Aligned_cols=325 Identities=26% Similarity=0.279 Sum_probs=239.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
...+++.||......++.+ |.|++.|||.|||+++++.+...+.+. +.++|||+||+-|+.|..+.|+++..-
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GGKVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CCeEEEecCCchHHHHHHHHHHHHhCC
Confidence 4568899999999888876 999999999999999888777777662 228999999999999999999999877
Q ss_pred CCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCc
Q 005313 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 352 (703)
Q Consensus 273 ~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~ 352 (703)
..-.++.++|.....+.... .....|+|+||+.+.+.+..+.+++.++.+|||||||+..-.-....+.+.......+.
T Consensus 85 p~~~i~~ltGev~p~~R~~~-w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREEL-WAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHH-HhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 76778888888765544333 34468999999999999999999999999999999999765444444555445556677
Q ss_pred eEEEEeccCcHH---HHHHHHHhhcCceeccc------------------------------------------------
Q 005313 353 QTLMYTATWPRE---VRKIAADLLVNPVQVNI------------------------------------------------ 381 (703)
Q Consensus 353 q~L~lSAT~p~~---v~~l~~~~l~~~~~i~i------------------------------------------------ 381 (703)
.+|+||||+..+ +.+.+.++....+.+..
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 899999998211 11111111100000000
Q ss_pred ----cc----chhhhcc-------ccc-------------------------eE-------E------------------
Q 005313 382 ----GN----VDELAAN-------KAI-------------------------TQ-------H------------------ 396 (703)
Q Consensus 382 ----~~----~~~~~~~-------~~i-------------------------~~-------~------------------ 396 (703)
.. .+.+... ... +| +
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 00 0000000 000 00 0
Q ss_pred -----------------EEEeccchhHHHHHHHHHhc---CCCCeEEEEcCCHHHHHHHHHHHhcCCcee--E-------
Q 005313 397 -----------------IEVLAPMDKHRRLEQILRSQ---EPGSKIIVFCSTKKMCDQLARNLTRQFGAA--A------- 447 (703)
Q Consensus 397 -----------------~~~~~~~~k~~~L~~ll~~~---~~~~kvLVF~~s~~~a~~la~~L~~~~~~~--~------- 447 (703)
...--.+-|...+.+++++. ..+.++|||++.+..++.+...|.+....+ .
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 00000112344455555443 345799999999999999999998643322 1
Q ss_pred -ecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCC
Q 005313 448 -IHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 526 (703)
Q Consensus 448 -lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d 526 (703)
...+|+|.++.+++++|+.|+++|||||++.++|||||++++||+|++..|...++||.|||||. ++|.+++|+....
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 23579999999999999999999999999999999999999999999999999999999999998 8899999998873
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.9e-36 Score=371.67 Aligned_cols=317 Identities=19% Similarity=0.246 Sum_probs=239.7
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH
Q 005313 184 ELLREVHN-AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 262 (703)
Q Consensus 184 ~l~~~l~~-~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~ 262 (703)
++.+.+++ .|| +|+++|+++|+.++++++++++||||+|||++++++++.... .+.++|||+||++|+.|+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-------~g~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-------KGKKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-------cCCeEEEEECHHHHHHHH
Confidence 44445555 689 699999999999999999999999999999966665544422 246899999999999999
Q ss_pred HHHHHHhcCCC--CceEEEeeCCCCCCch---hhhhcCC-CcEEEECHHHHHHHHHhccccccCcccEEEeccccccc--
Q 005313 263 QDEAVKFGKSS--RISCTCLYGGAPKGPQ---LKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-- 334 (703)
Q Consensus 263 ~~~~~k~~~~~--~i~v~~~~gg~~~~~~---~~~l~~g-~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~-- 334 (703)
.+.++.++... ++.+..++|+....++ +..+..+ ++|||+||++|.+.+... ...++++|||||||+|++
T Consensus 139 ~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 139 VEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccc
Confidence 99999988765 4566778888766544 3344454 899999999998876532 226799999999999987
Q ss_pred ---------CCChHHHHH----HHH----------------------HcCCCce-EEEEeccCcHHHHHHHHHhhcCcee
Q 005313 335 ---------MGFEPQIRK----IVK----------------------EVPARRQ-TLMYTATWPREVRKIAADLLVNPVQ 378 (703)
Q Consensus 335 ---------~gf~~~i~~----il~----------------------~l~~~~q-~L~lSAT~p~~v~~l~~~~l~~~~~ 378 (703)
+||.+++.. ++. .++...| +|++|||++... ....++.++..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeE
Confidence 588887764 322 2344555 677999998531 11233455555
Q ss_pred cccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHH---HHHHHHHHh-cCCceeEecCCCCH
Q 005313 379 VNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKM---CDQLARNLT-RQFGAAAIHGDKSQ 454 (703)
Q Consensus 379 i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~---a~~la~~L~-~~~~~~~lhg~~~~ 454 (703)
+.++... .....+.+.+.......+ ..|..+++.. +..+||||++++. |+.+++.|. .++.+..+|++
T Consensus 295 f~v~~~~--~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 295 FEVGSGR--SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEecCCC--CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 5554322 233345566554444434 5677777765 4589999999875 589999998 47899999985
Q ss_pred HHHHHHHHHHhcCCCcEEEEc----ccccccCCCCC-ccEEEEecCCC---CHHHHHHHH-------------hccCCCC
Q 005313 455 SERDYVLNQFRAGRSPVLVAT----DVAARGLDIKD-IRVVVNYDFPT---GVEDYVHRI-------------GRTGRAG 513 (703)
Q Consensus 455 ~eR~~vl~~F~~G~~~ILVaT----dv~~~GIDIp~-v~~VI~~d~P~---s~~~yiQri-------------GRagR~G 513 (703)
|..++++|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|-. ||++|.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8899999999999999999 58999999999 99999999999 888776655 9999999
Q ss_pred CccEEEEEE
Q 005313 514 ATGVAYTFF 522 (703)
Q Consensus 514 ~~g~~i~~~ 522 (703)
....+++.+
T Consensus 445 ~~~~~~~~~ 453 (1638)
T PRK14701 445 IPIEGVLDV 453 (1638)
T ss_pred CcchhHHHh
Confidence 877776433
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1e-35 Score=349.09 Aligned_cols=305 Identities=21% Similarity=0.294 Sum_probs=231.6
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hcCCCCce
Q 005313 198 TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK-FGKSSRIS 276 (703)
Q Consensus 198 ~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k-~~~~~~i~ 276 (703)
+.+-.+.+..+.+++++|++|+||||||++|.++++.... .+.++||+.|+|++|.|+.+.+.+ +....+..
T Consensus 4 ~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 4 HAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred hHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 3445667778888899999999999999999999887652 135899999999999999998854 44444444
Q ss_pred EEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccc-ccccCCChHH-HHHHHHHcCCCceE
Q 005313 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD-RMLDMGFEPQ-IRKIVKEVPARRQT 354 (703)
Q Consensus 277 v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH-~ml~~gf~~~-i~~il~~l~~~~q~ 354 (703)
+...+.... ......+|+|+|++.|++++.. ...+.++++|||||+| ++++.++.-. +..+...++++.|+
T Consensus 77 VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlql 149 (819)
T TIGR01970 77 VGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKI 149 (819)
T ss_pred EEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceE
Confidence 443333321 1233478999999999998875 4578999999999999 5787766443 45566678889999
Q ss_pred EEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhH-----HHHHHHHHhcCCCCeEEEEcCCH
Q 005313 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKH-----RRLEQILRSQEPGSKIIVFCSTK 429 (703)
Q Consensus 355 L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~-----~~L~~ll~~~~~~~kvLVF~~s~ 429 (703)
|+||||++.+. +..++.+...+.+... ...+..++......++. ..+..+++. ..+.+||||+++
T Consensus 150 IlmSATl~~~~---l~~~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~ 219 (819)
T TIGR01970 150 LAMSATLDGER---LSSLLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQ 219 (819)
T ss_pred EEEeCCCCHHH---HHHHcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCH
Confidence 99999998654 3566655444433211 11233333333322222 223333333 246899999999
Q ss_pred HHHHHHHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCC--------
Q 005313 430 KMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT-------- 497 (703)
Q Consensus 430 ~~a~~la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~-------- 497 (703)
++++.+++.|.+ .+.+..+||++++++|.++++.|++|+.+|||||+++++|||||+|++||+++++.
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999975 57789999999999999999999999999999999999999999999999999874
Q ss_pred ----------CHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 498 ----------GVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 498 ----------s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
|...|+||.||+||. ++|.||.|+++.+.
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 345699999999999 89999999986543
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=8.2e-36 Score=346.67 Aligned_cols=332 Identities=25% Similarity=0.294 Sum_probs=261.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHH
Q 005313 180 GFPPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 258 (703)
Q Consensus 180 ~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreL 258 (703)
.+++.+.+.+...++.++++.|++++...+.+ +|+||++|||+|||+++++.++..+.+. +.++|+|||+++|
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------~~k~vYivPlkAL 88 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------GGKVVYIVPLKAL 88 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc------CCcEEEEeChHHH
Confidence 46778888888888889999999999776655 9999999999999999999999988763 3589999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCCh
Q 005313 259 ATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 338 (703)
Q Consensus 259 a~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~ 338 (703)
|+|++++|++ ....++++...+|+..... ....+++|||+|||+|..++.+....+..+++|||||+|.+.+....
T Consensus 89 a~Ek~~~~~~-~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 89 AEEKYEEFSR-LEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHHhhh-HHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccC
Confidence 9999999994 3567899999999886543 12234899999999998888877667889999999999988777677
Q ss_pred HHHHHHHHHcC---CCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchh-------HHH
Q 005313 339 PQIRKIVKEVP---ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDK-------HRR 408 (703)
Q Consensus 339 ~~i~~il~~l~---~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k-------~~~ 408 (703)
+.++.|+..+. ...|++++|||+|+ ..+++..+-.++. ...-.+..+.......+.+.......| ...
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHH
Confidence 77777776653 34799999999984 4555555544444 323333444444444444444443332 445
Q ss_pred HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcC--------------------------------------CceeEecC
Q 005313 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ--------------------------------------FGAAAIHG 450 (703)
Q Consensus 409 L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~--------------------------------------~~~~~lhg 450 (703)
+..++.....++.+||||++++.+...|+.|.+. .+++.+|+
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 5666667778899999999999999988888620 25788999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEE----Eec-----CCCCHHHHHHHHhccCCCCC--ccEEE
Q 005313 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV----NYD-----FPTGVEDYVHRIGRTGRAGA--TGVAY 519 (703)
Q Consensus 451 ~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI----~~d-----~P~s~~~yiQriGRagR~G~--~g~~i 519 (703)
+++.++|..+.+.|+.|.++|||||.+++.|+|+|.-.+|| .|+ .+.++-+++||+|||||.|- .|.++
T Consensus 323 GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~ 402 (766)
T COG1204 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAI 402 (766)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEE
Confidence 99999999999999999999999999999999999887777 366 45578999999999999884 46666
Q ss_pred EEEe
Q 005313 520 TFFG 523 (703)
Q Consensus 520 ~~~~ 523 (703)
++..
T Consensus 403 i~~~ 406 (766)
T COG1204 403 ILAT 406 (766)
T ss_pred EEec
Confidence 6663
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6.3e-36 Score=326.01 Aligned_cols=300 Identities=20% Similarity=0.199 Sum_probs=209.3
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCC------
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPK------ 286 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~------ 286 (703)
+++++||||+|||++|+++++..+... ...++||++|+++|+.|+++.+.+++.. .+..+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-----~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-----KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-----CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhcc
Confidence 589999999999999999998876431 2358999999999999999999987432 12222222110
Q ss_pred ------Cchhhhh------cCCCcEEEECHHHHHHHHHhc----ccccc--CcccEEEecccccccCCChHHHHHHHHHc
Q 005313 287 ------GPQLKDI------DRGVDIVVATPGRLNDILEMR----RISLN--QVSYLVLDEADRMLDMGFEPQIRKIVKEV 348 (703)
Q Consensus 287 ------~~~~~~l------~~g~dIlV~Tp~~L~~~l~~~----~~~l~--~~~~IViDEaH~ml~~gf~~~i~~il~~l 348 (703)
....... .-..+|+|+||+.++..+... ...+. ..++|||||+|.+.++.+.. +..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 0000000 012679999999998776541 11111 23789999999998765443 55555555
Q ss_pred C-CCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEE--EeccchhHHHHHHHHHhcCCCCeEEEE
Q 005313 349 P-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIE--VLAPMDKHRRLEQILRSQEPGSKIIVF 425 (703)
Q Consensus 349 ~-~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~--~~~~~~k~~~L~~ll~~~~~~~kvLVF 425 (703)
. .+.|+|+||||+|+.+.+++..+........+.. .... ....+.+. ......+...+..+++....+.++|||
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDL-KEER--RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCC-cccc--ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 4 4689999999999877776665533321111110 0000 00111111 112234556666677666667899999
Q ss_pred cCCHHHHHHHHHHHhcCC---ceeEecCCCCHHHHHH----HHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCC
Q 005313 426 CSTKKMCDQLARNLTRQF---GAAAIHGDKSQSERDY----VLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTG 498 (703)
Q Consensus 426 ~~s~~~a~~la~~L~~~~---~~~~lhg~~~~~eR~~----vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s 498 (703)
|+++++|+.+++.|.+.. .+..+||++++.+|.. +++.|++++.+|||||+++++||||+ +++||++..|
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~-- 305 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP-- 305 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--
Confidence 999999999999997543 4889999999999976 48899999999999999999999995 7888888776
Q ss_pred HHHHHHHHhccCCCCCc----cEEEEEEecCCh
Q 005313 499 VEDYVHRIGRTGRAGAT----GVAYTFFGDQDS 527 (703)
Q Consensus 499 ~~~yiQriGRagR~G~~----g~~i~~~~~~d~ 527 (703)
++.|+||+||+||.|+. +.+++|....+.
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 78999999999998854 367777654443
No 62
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=4.5e-37 Score=318.17 Aligned_cols=275 Identities=33% Similarity=0.594 Sum_probs=219.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHh---cCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCccc
Q 005313 247 PTVLVLSPTRELATQIQDEAVKF---GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 323 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~---~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~ 323 (703)
|.+||+-|++||++|.++.+++| .....++..++.|+...+.|...+..+.+|+|+||++|.+.++...+.+.++.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 57899999999999999865555 444456777888999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCChHHHHHHHHHcCC------CceEEEEeccCcH-HHHHHHHHhhcCceecccccchhhhccccceEE
Q 005313 324 LVLDEADRMLDMGFEPQIRKIVKEVPA------RRQTLMYTATWPR-EVRKIAADLLVNPVQVNIGNVDELAANKAITQH 396 (703)
Q Consensus 324 IViDEaH~ml~~gf~~~i~~il~~l~~------~~q~L~lSAT~p~-~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~ 396 (703)
+|+||++.++..++...|..+..+++. ..|.+++|||+.. ++.++...+|..|..+.+...+.... .+...
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe--tvHhv 444 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE--TVHHV 444 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch--hhccc
Confidence 999999999999999988888777753 5689999999742 45556666676666666544332211 11111
Q ss_pred EEEeccc------------------------------hhHHHHHHHH---------HhcCCCCeEEEEcCCHHHHHHHHH
Q 005313 397 IEVLAPM------------------------------DKHRRLEQIL---------RSQEPGSKIIVFCSTKKMCDQLAR 437 (703)
Q Consensus 397 ~~~~~~~------------------------------~k~~~L~~ll---------~~~~~~~kvLVF~~s~~~a~~la~ 437 (703)
+..+.+. +.......++ +.. .-.++||||.|+.+|+.|.+
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHH
Confidence 1111110 0011111122 111 12489999999999999999
Q ss_pred HHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCC
Q 005313 438 NLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAG 513 (703)
Q Consensus 438 ~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G 513 (703)
+|.+ +|.++++|++..+.||...++.|+..+.++|||||++++||||..+-++||..+|.+...|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 9985 588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEec
Q 005313 514 ATGVAYTFFGD 524 (703)
Q Consensus 514 ~~g~~i~~~~~ 524 (703)
.-|.++.++..
T Consensus 604 rmglaislvat 614 (725)
T KOG0349|consen 604 RMGLAISLVAT 614 (725)
T ss_pred hcceeEEEeec
Confidence 99999998753
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.7e-35 Score=329.15 Aligned_cols=316 Identities=20% Similarity=0.208 Sum_probs=242.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..||++|..+++.++.|+ |+.+.||+|||++|++|++..... ++.++||+||++||.|.++++.++....+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-------G~~v~VvTptreLA~qdae~~~~l~~~lG 172 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-------GLPVHVITVNDYLAERDAELMRPLYEALG 172 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-------CCeEEEEcCcHHHHHHHHHHHHHHHhhcC
Confidence 489999999999999999 899999999999999999987654 56899999999999999999999999999
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhccc-------------------------cccCcccEEEec
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRRI-------------------------SLNQVSYLVLDE 328 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~~~-------------------------~l~~~~~IViDE 328 (703)
+.+.+++|+.. .+.+.+..+++|+|+|...| .|+|..+.. ....+.++||||
T Consensus 173 lsv~~i~gg~~--~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDE 250 (656)
T PRK12898 173 LTVGCVVEDQS--PDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDE 250 (656)
T ss_pred CEEEEEeCCCC--HHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeec
Confidence 99999999864 44556667899999999877 556543311 134578999999
Q ss_pred ccccc-cC-----------------CChHHHHHHHHHc------------------------------------------
Q 005313 329 ADRML-DM-----------------GFEPQIRKIVKEV------------------------------------------ 348 (703)
Q Consensus 329 aH~ml-~~-----------------gf~~~i~~il~~l------------------------------------------ 348 (703)
+|.++ |. .+...+..++..+
T Consensus 251 vDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~ 330 (656)
T PRK12898 251 ADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRR 330 (656)
T ss_pred ccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHH
Confidence 99654 10 0000000000000
Q ss_pred --------------CC-------------------------------------------------------------Cce
Q 005313 349 --------------PA-------------------------------------------------------------RRQ 353 (703)
Q Consensus 349 --------------~~-------------------------------------------------------------~~q 353 (703)
.. -.+
T Consensus 331 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~k 410 (656)
T PRK12898 331 EELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLR 410 (656)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHH
Confidence 00 014
Q ss_pred EEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHH
Q 005313 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMC 432 (703)
Q Consensus 354 ~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a 432 (703)
+.+||||......++...|..+++.+...... .....+.+..+...+|...|..+++.. ..+.++||||+|++.+
T Consensus 411 l~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~----~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~s 486 (656)
T PRK12898 411 LAGMTGTAREVAGELWSVYGLPVVRIPTNRPS----QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAAS 486 (656)
T ss_pred HhcccCcChHHHHHHHHHHCCCeEEeCCCCCc----cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 66888888877777777777776665543322 111223344556677888888888764 3457899999999999
Q ss_pred HHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC---Ccc-----EEEEecCCCCHHHHH
Q 005313 433 DQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK---DIR-----VVVNYDFPTGVEDYV 503 (703)
Q Consensus 433 ~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp---~v~-----~VI~~d~P~s~~~yi 503 (703)
+.+++.|. ..+++.+||+++. +|+..+..|..+...|+|||++++||+||+ +|. +||++++|.+...|+
T Consensus 487 e~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~ 564 (656)
T PRK12898 487 ERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDR 564 (656)
T ss_pred HHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHH
Confidence 99999998 5789999999865 455555556666667999999999999999 676 999999999999999
Q ss_pred HHHhccCCCCCccEEEEEEecCCh
Q 005313 504 HRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 504 QriGRagR~G~~g~~i~~~~~~d~ 527 (703)
||+||+||.|++|.+++|++..|.
T Consensus 565 hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 565 QLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999987653
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.9e-35 Score=344.98 Aligned_cols=305 Identities=18% Similarity=0.283 Sum_probs=230.4
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hcCCCCce
Q 005313 198 TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK-FGKSSRIS 276 (703)
Q Consensus 198 ~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k-~~~~~~i~ 276 (703)
+.+-.+.+..+.+++++|++|+||||||++|.++++..... ..++||++|||++|.|+.+.+.+ +....+..
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-------CCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 34455677788888999999999999999999887764321 24899999999999999998854 44455555
Q ss_pred EEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccc-cccCCCh-HHHHHHHHHcCCCceE
Q 005313 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-MLDMGFE-PQIRKIVKEVPARRQT 354 (703)
Q Consensus 277 v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~-ml~~gf~-~~i~~il~~l~~~~q~ 354 (703)
+...+++... .....+|+|+|+++|++++.. ...++++++|||||+|. +++.++. ..+.++++.++++.|+
T Consensus 80 VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 80 VGYRMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKL 152 (812)
T ss_pred EEEEecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceE
Confidence 5555554322 122368999999999998875 45789999999999996 5554432 3345566778889999
Q ss_pred EEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHH-----HHHHHHHhcCCCCeEEEEcCCH
Q 005313 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR-----RLEQILRSQEPGSKIIVFCSTK 429 (703)
Q Consensus 355 L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~-----~L~~ll~~~~~~~kvLVF~~s~ 429 (703)
|+||||++.+. +..++.+...+.+... ...+.+++.......+.. .+..++.. ..+.+||||+++
T Consensus 153 ilmSATl~~~~---l~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~ 222 (812)
T PRK11664 153 LIMSATLDNDR---LQQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGV 222 (812)
T ss_pred EEEecCCCHHH---HHHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCH
Confidence 99999998652 3566655444433211 112344443333333332 23333332 347899999999
Q ss_pred HHHHHHHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCC--------
Q 005313 430 KMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT-------- 497 (703)
Q Consensus 430 ~~a~~la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~-------- 497 (703)
++++.+++.|.+ .+.+..+||++++++|+.+++.|++|+.+|||||+++++||||++|++||+++++.
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~ 302 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKT 302 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccC
Confidence 999999999985 56788999999999999999999999999999999999999999999999988764
Q ss_pred ----------CHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 498 ----------GVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 498 ----------s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
|.+.|+||.||+||. .+|.||.|+++.+.
T Consensus 303 g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 303 GLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred CcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 346899999999999 79999999986543
No 65
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.4e-33 Score=333.54 Aligned_cols=325 Identities=28% Similarity=0.333 Sum_probs=238.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
+..++++||.+++..++.+ ++|+++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.++++...
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 4458899999999998887 99999999999999998888777632 2358999999999999999999998765
Q ss_pred CCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCc
Q 005313 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 352 (703)
Q Consensus 273 ~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~ 352 (703)
....+..+.|+..... ...+...++|+|+||+.+...+....+.+.++++|||||||++........+...+....+..
T Consensus 85 ~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 4456777777665433 334445689999999999888877788889999999999999875543444444444445567
Q ss_pred eEEEEeccCcH---HHHHHHHHhhcCceeccc------------------------------------------------
Q 005313 353 QTLMYTATWPR---EVRKIAADLLVNPVQVNI------------------------------------------------ 381 (703)
Q Consensus 353 q~L~lSAT~p~---~v~~l~~~~l~~~~~i~i------------------------------------------------ 381 (703)
++++||||+.. .+..++..+....+.+..
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 79999999732 122222221110000000
Q ss_pred -----c---cchhhh-ccccce----------------------------------------------------------
Q 005313 382 -----G---NVDELA-ANKAIT---------------------------------------------------------- 394 (703)
Q Consensus 382 -----~---~~~~~~-~~~~i~---------------------------------------------------------- 394 (703)
. ...++. ....+.
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 0 000000 000000
Q ss_pred --------------EEEEEeccchhHHHHHHHHHhc---CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCC-----
Q 005313 395 --------------QHIEVLAPMDKHRRLEQILRSQ---EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGD----- 451 (703)
Q Consensus 395 --------------~~~~~~~~~~k~~~L~~ll~~~---~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~----- 451 (703)
..........|...|.++++.. ..+.++||||++++.|+.+++.|. ..+.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 0000011234555666666553 456899999999999999999996 46778888876
Q ss_pred ---CCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCC
Q 005313 452 ---KSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 526 (703)
Q Consensus 452 ---~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d 526 (703)
+++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|++...|+||+||++|.+. +.+++|+....
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999865 77888876543
No 66
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.3e-34 Score=306.37 Aligned_cols=337 Identities=22% Similarity=0.300 Sum_probs=266.5
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEE
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~-il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl 252 (703)
...+++.+|+++.+.|+..|+..+.|+|.-++.. +++|+|++|+.+|+||||++.-++-+..+.. .+.+.|+|
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~------~g~KmlfL 267 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS------GGKKMLFL 267 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh------CCCeEEEE
Confidence 4566788999999999999999999999999966 6789999999999999999988887776655 35689999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh----hhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEec
Q 005313 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL----KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDE 328 (703)
Q Consensus 253 ~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~----~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDE 328 (703)
+|..+||+|.+++|+.-....++.+..-+|.......- ......+||||+|++-+-.++... ..+.++..|||||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 99999999999999887777888887777655433221 122234899999999996666665 6789999999999
Q ss_pred ccccccCCChHHHHHHHH---HcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEec-cch
Q 005313 329 ADRMLDMGFEPQIRKIVK---EVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA-PMD 404 (703)
Q Consensus 329 aH~ml~~gf~~~i~~il~---~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~-~~~ 404 (703)
+|.+-+....+.+.-++. .+-+..|+|.+|||..+ -.+++..+-...+..+-. ...+..|+.+.. ..+
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV~y~~R-------PVplErHlvf~~~e~e 418 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLVLYDER-------PVPLERHLVFARNESE 418 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeEeecCC-------CCChhHeeeeecCchH
Confidence 998877666666665544 45668999999999853 345566654444433221 222445555555 677
Q ss_pred hHHHHHHHHHhc-------CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 005313 405 KHRRLEQILRSQ-------EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 476 (703)
Q Consensus 405 k~~~L~~ll~~~-------~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd 476 (703)
|.+.+..+++.. .-.+.+|||+++++.|..++..|. +++.+..+|++++..+|..+..+|.++++.++|+|.
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 888887777643 123589999999999999999998 689999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEE---ecCC-CCHHHHHHHHhccCCCC--CccEEEEEEecC
Q 005313 477 VAARGLDIKDIRVVVN---YDFP-TGVEDYVHRIGRTGRAG--ATGVAYTFFGDQ 525 (703)
Q Consensus 477 v~~~GIDIp~v~~VI~---~d~P-~s~~~yiQriGRagR~G--~~g~~i~~~~~~ 525 (703)
+++.|||+|.-.+|+. ++.- -++.+|.||.||+||.+ ..|++|+++.+.
T Consensus 499 AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999998665442 2333 38999999999999986 568888887643
No 67
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-33 Score=323.67 Aligned_cols=322 Identities=21% Similarity=0.256 Sum_probs=226.2
Q ss_pred CCCcHHHHHHHHHHHcC---CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 195 SSPTPIQAQSWPIALQS---RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~g---rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
..|+|||++++..++.. +..|+++|||+|||++.+..+. .+. .++|||||+.+|+.||.++|.+|..
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l~---------k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TVK---------KSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-HhC---------CCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 47899999999998843 3689999999999998775443 222 2699999999999999999999875
Q ss_pred CCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh--------ccccccCcccEEEecccccccCCChHHHHH
Q 005313 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM--------RRISLNQVSYLVLDEADRMLDMGFEPQIRK 343 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~--------~~~~l~~~~~IViDEaH~ml~~gf~~~i~~ 343 (703)
.....+..++++.... .....+|+|+|++.+...... ..+....+++||+||||++. ...+..
T Consensus 324 l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~fr~ 394 (732)
T TIGR00603 324 IDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMFRR 394 (732)
T ss_pred CCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHHHH
Confidence 4445555565543221 112368999999988532211 12233568899999999984 455666
Q ss_pred HHHHcCCCceEEEEeccCcHHHHHHH-HHhhcCceecccccchhhhccccceEEE-------------------------
Q 005313 344 IVKEVPARRQTLMYTATWPREVRKIA-ADLLVNPVQVNIGNVDELAANKAITQHI------------------------- 397 (703)
Q Consensus 344 il~~l~~~~q~L~lSAT~p~~v~~l~-~~~l~~~~~i~i~~~~~~~~~~~i~~~~------------------------- 397 (703)
++..+... ..|+||||+.++..... ..++..|...... ..++.....+....
T Consensus 395 il~~l~a~-~RLGLTATP~ReD~~~~~L~~LiGP~vye~~-~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 395 VLTIVQAH-CKLGLTATLVREDDKITDLNFLIGPKLYEAN-WMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred HHHhcCcC-cEEEEeecCcccCCchhhhhhhcCCeeeecC-HHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhh
Confidence 77776544 47999999875433221 1122223322221 11111111111100
Q ss_pred -EEeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHHHHHHHHhcC-CCcEEEE
Q 005313 398 -EVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAG-RSPVLVA 474 (703)
Q Consensus 398 -~~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~~vl~~F~~G-~~~ILVa 474 (703)
.......|...+..+++.. ..+.++||||.+...++.+++.|. +..+||++++.+|..+++.|+++ .+++||+
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG----KPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----CceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 0011223445555566544 367899999999999999998883 56799999999999999999875 8899999
Q ss_pred cccccccCCCCCccEEEEecCCC-CHHHHHHHHhccCCCCCccEE-------EEEEecC--ChHHHHHHHHHHHhcc
Q 005313 475 TDVAARGLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVA-------YTFFGDQ--DSRYASDLIKLLEGAK 541 (703)
Q Consensus 475 Tdv~~~GIDIp~v~~VI~~d~P~-s~~~yiQriGRagR~G~~g~~-------i~~~~~~--d~~~~~~l~~~l~~~~ 541 (703)
|+++.+|||+|++++||+++.|. |..+|+||+||++|.+..+.+ |.|++.. +..+..+-.++|.+..
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 99999999999999999999985 999999999999999876654 7777654 4556666677776543
No 68
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.2e-33 Score=342.52 Aligned_cols=291 Identities=22% Similarity=0.347 Sum_probs=218.0
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHH
Q 005313 184 ELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQ 263 (703)
Q Consensus 184 ~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~ 263 (703)
++.+.+.+.....|+++|+++++.++.+++++++||||+|||+ |++++...+.. .++++|||+||++|+.|+.
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh------cCCeEEEEeCHHHHHHHHH
Confidence 4444555545558999999999999999999999999999997 66666655533 1568999999999999999
Q ss_pred HHHHHhcCCCCceEE---EeeCCCCCCch---hhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEEEeccccccc--
Q 005313 264 DEAVKFGKSSRISCT---CLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-- 334 (703)
Q Consensus 264 ~~~~k~~~~~~i~v~---~~~gg~~~~~~---~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~-- 334 (703)
+.++++....++.+. +++|+....++ +..+.+ +++|||+||++|.+.+.. +.. ++++|||||||+|++
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhcc
Confidence 999999887666543 45677665443 334444 499999999999887664 222 899999999999998
Q ss_pred ---------CCChHH-HHHHH----------------------HHcCCCce--EEEEecc-CcHHHHHHHHHhhcCceec
Q 005313 335 ---------MGFEPQ-IRKIV----------------------KEVPARRQ--TLMYTAT-WPREVRKIAADLLVNPVQV 379 (703)
Q Consensus 335 ---------~gf~~~-i~~il----------------------~~l~~~~q--~L~lSAT-~p~~v~~l~~~~l~~~~~i 379 (703)
+||..+ +..++ ..++..+| ++++||| +|..+.. .++.+...+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccce
Confidence 678764 44432 23455555 6778999 6765543 233444444
Q ss_pred ccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCH---HHHHHHHHHHhc-CCceeEecCCCCHH
Q 005313 380 NIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTK---KMCDQLARNLTR-QFGAAAIHGDKSQS 455 (703)
Q Consensus 380 ~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~---~~a~~la~~L~~-~~~~~~lhg~~~~~ 455 (703)
.++... .....+.+.+..... +...|..+++.. +..+||||+++ +.|+.+++.|.+ ++.+..+||++++
T Consensus 293 ~v~~~~--~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 293 EVGGGS--DTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred EecCcc--ccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 444322 222345555443322 245567777665 35799999999 999999999985 6899999999973
Q ss_pred HHHHHHHHHhcCCCcEEEE----cccccccCCCCC-ccEEEEecCCC
Q 005313 456 ERDYVLNQFRAGRSPVLVA----TDVAARGLDIKD-IRVVVNYDFPT 497 (703)
Q Consensus 456 eR~~vl~~F~~G~~~ILVa----Tdv~~~GIDIp~-v~~VI~~d~P~ 497 (703)
.+++.|++|+++|||| |++++||||||+ |++|||||+|.
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 599999999999 89999999995
No 69
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.6e-33 Score=313.45 Aligned_cols=334 Identities=25% Similarity=0.294 Sum_probs=235.1
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 180 GFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 180 ~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
.+++.....+.-.....++.||.+.+..+| ++|+||++|||+|||+++...++.++.+... .++||++|++-|+
T Consensus 46 ~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-----~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 46 SLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-----GKVVFLAPTRPLV 119 (746)
T ss_pred CCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-----ceEEEeeCCchHH
Confidence 455666665555566789999999999999 9999999999999999999999999887544 4899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcccc-ccCcccEEEecccccccCC-C
Q 005313 260 TQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS-LNQVSYLVLDEADRMLDMG-F 337 (703)
Q Consensus 260 ~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~-l~~~~~IViDEaH~ml~~g-f 337 (703)
.|+...+..++.. ..+....++.........+....+|+|+||+.|.+.+...... +..|.+|||||||+..... +
T Consensus 120 ~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y 197 (746)
T KOG0354|consen 120 NQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPY 197 (746)
T ss_pred HHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccH
Confidence 9999888887765 4444455553333333456667899999999999888765443 5889999999999976544 3
Q ss_pred hHHHHHHHHHcCCCceEEEEeccCcHHHHHH---HHHhhcC----------------------cee--------------
Q 005313 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKI---AADLLVN----------------------PVQ-------------- 378 (703)
Q Consensus 338 ~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l---~~~~l~~----------------------~~~-------------- 378 (703)
...++..+..-....|+|+||||+....... +..+... +..
T Consensus 198 ~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 198 NNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 3344455544444449999999984332221 1111000 000
Q ss_pred --------------cccccch------------------------------------hhhccccce--E-----------
Q 005313 379 --------------VNIGNVD------------------------------------ELAANKAIT--Q----------- 395 (703)
Q Consensus 379 --------------i~i~~~~------------------------------------~~~~~~~i~--~----------- 395 (703)
..+.+.. .+.....+. .
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 0000000 000000000 0
Q ss_pred ---------------------------EEEE--eccchhHHHHHHHHHh---cCCCCeEEEEcCCHHHHHHHHHHHhc--
Q 005313 396 ---------------------------HIEV--LAPMDKHRRLEQILRS---QEPGSKIIVFCSTKKMCDQLARNLTR-- 441 (703)
Q Consensus 396 ---------------------------~~~~--~~~~~k~~~L~~ll~~---~~~~~kvLVF~~s~~~a~~la~~L~~-- 441 (703)
+... .....|++.|.+++.. ..+..++||||.+++.|..|..+|.+
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 0000 0012234444444432 24556999999999999999999973
Q ss_pred --CCceeEec--------CCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCC
Q 005313 442 --QFGAAAIH--------GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGR 511 (703)
Q Consensus 442 --~~~~~~lh--------g~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR 511 (703)
.+....+- .+|++.++.++++.|++|+++|||||+++++||||+.|++||-||.-.++..++||.|| ||
T Consensus 438 ~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR 516 (746)
T KOG0354|consen 438 ELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR 516 (746)
T ss_pred hcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc
Confidence 12222222 37999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCccEEEEEEe
Q 005313 512 AGATGVAYTFFG 523 (703)
Q Consensus 512 ~G~~g~~i~~~~ 523 (703)
+ +.|.++++++
T Consensus 517 a-~ns~~vll~t 527 (746)
T KOG0354|consen 517 A-RNSKCVLLTT 527 (746)
T ss_pred c-cCCeEEEEEc
Confidence 9 6688888887
No 70
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.4e-33 Score=320.76 Aligned_cols=316 Identities=18% Similarity=0.217 Sum_probs=230.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.|+++|..++..+++|+ |+.+.||+|||++|++|++..... ++.++||+||++||.|.++++..+....++
T Consensus 78 ~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-------G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 78 RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-------GKGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 89999999999988876 999999999999999999866554 568999999999999999999999999999
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhcc------ccccCcccEEEecccccccCC------------
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRMLDMG------------ 336 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~~------~~l~~~~~IViDEaH~ml~~g------------ 336 (703)
.+.++.|+.....+. .....++|+|+|++.| .|++.... ..+..+.++||||||.|+=..
T Consensus 149 ~v~~i~g~~~~~~~r-~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~ 227 (790)
T PRK09200 149 TVGLNFSDIDDASEK-KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPR 227 (790)
T ss_pred eEEEEeCCCCcHHHH-HHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCc
Confidence 999999988743332 3345699999999999 66665432 345788999999999875110
Q ss_pred ----ChHHHHHHHHHcCCC--------c----------------------------------------------------
Q 005313 337 ----FEPQIRKIVKEVPAR--------R---------------------------------------------------- 352 (703)
Q Consensus 337 ----f~~~i~~il~~l~~~--------~---------------------------------------------------- 352 (703)
+...+..++..+... .
T Consensus 228 ~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV 307 (790)
T PRK09200 228 VQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIV 307 (790)
T ss_pred cccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 111222222222110 1
Q ss_pred ---------------------------------------------------------eEEEEeccCcHHHHHHHHHhhcC
Q 005313 353 ---------------------------------------------------------QTLMYTATWPREVRKIAADLLVN 375 (703)
Q Consensus 353 ---------------------------------------------------------q~L~lSAT~p~~v~~l~~~~l~~ 375 (703)
++.+||.|...+..++..-|-.+
T Consensus 308 ~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~ 387 (790)
T PRK09200 308 YDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNME 387 (790)
T ss_pred ECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCc
Confidence 12233333222111111111111
Q ss_pred ceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCC
Q 005313 376 PVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKS 453 (703)
Q Consensus 376 ~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~ 453 (703)
.+.+.... ........ ........+|...|...+... ..+.++||||+|++.++.++..|.+ .+++..+|+++.
T Consensus 388 --v~~IPt~k-p~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 388 --VVQIPTNR-PIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred --EEECCCCC-CcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 11111000 00000111 122345566777777777553 5678999999999999999999984 799999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcccccccCCC---CCcc-----EEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecC
Q 005313 454 QSERDYVLNQFRAGRSPVLVATDVAARGLDI---KDIR-----VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 454 ~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDI---p~v~-----~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
+.++..+..+++.| .|+|||++++||+|| ++|. +||++++|.+...|+||+||+||.|++|.+++|++..
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 99988888887766 699999999999999 6998 9999999999999999999999999999999999876
Q ss_pred Ch
Q 005313 526 DS 527 (703)
Q Consensus 526 d~ 527 (703)
|.
T Consensus 542 D~ 543 (790)
T PRK09200 542 DD 543 (790)
T ss_pred HH
Confidence 53
No 71
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=7.2e-33 Score=287.05 Aligned_cols=332 Identities=24% Similarity=0.322 Sum_probs=237.6
Q ss_pred HHHHHHC-CCCCC-cHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH
Q 005313 186 LREVHNA-GFSSP-TPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 262 (703)
Q Consensus 186 ~~~l~~~-g~~~p-~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~ 262 (703)
.++|++. |+..+ ++.|++|+..+..+ +||.|++|||+||+++|.+|++.+ +...||++|..+|++.+
T Consensus 8 reaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----------~gITIV~SPLiALIkDQ 77 (641)
T KOG0352|consen 8 REALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----------GGITIVISPLIALIKDQ 77 (641)
T ss_pred HHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----------CCeEEEehHHHHHHHHH
Confidence 3344433 54433 68999999998876 599999999999999999998765 23789999999999999
Q ss_pred HHHHHHhcCCCCceEEEeeCCCC---CCchhhhhcC---CCcEEEECHHHHHHHHH----hccccccCcccEEEeccccc
Q 005313 263 QDEAVKFGKSSRISCTCLYGGAP---KGPQLKDIDR---GVDIVVATPGRLNDILE----MRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 263 ~~~~~k~~~~~~i~v~~~~gg~~---~~~~~~~l~~---g~dIlV~Tp~~L~~~l~----~~~~~l~~~~~IViDEaH~m 332 (703)
.+.+.++-- .+..+..... ....+.+|.+ ...|++.||+....... +....-+.+.|||+||||++
T Consensus 78 iDHL~~LKV----p~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCV 153 (641)
T KOG0352|consen 78 IDHLKRLKV----PCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCV 153 (641)
T ss_pred HHHHHhcCC----chhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhH
Confidence 988877632 2222222111 1222333332 47799999987533221 22233455789999999999
Q ss_pred ccCC--ChHHHHHHHH--HcCCCceEEEEeccCcHHHHHHHHHh--hcCceecccccchhhhccccceEEEEEeccchhH
Q 005313 333 LDMG--FEPQIRKIVK--EVPARRQTLMYTATWPREVRKIAADL--LVNPVQVNIGNVDELAANKAITQHIEVLAPMDKH 406 (703)
Q Consensus 333 l~~g--f~~~i~~il~--~l~~~~q~L~lSAT~p~~v~~l~~~~--l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~ 406 (703)
..|| |++.+..+-. ..-+....+.+|||..+.+.+.+..- |.+|+.+.-. .....+.....++.. .-.+.+
T Consensus 154 SQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT--P~FR~NLFYD~~~K~-~I~D~~ 230 (641)
T KOG0352|consen 154 SQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT--PTFRDNLFYDNHMKS-FITDCL 230 (641)
T ss_pred hhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC--cchhhhhhHHHHHHH-HhhhHh
Confidence 9987 8888776632 23345669999999998887655433 3455443211 111111100000000 001223
Q ss_pred HHHHHHHHhc------------CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 005313 407 RRLEQILRSQ------------EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLV 473 (703)
Q Consensus 407 ~~L~~ll~~~------------~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILV 473 (703)
..|.++.... ...+-.||||.|++.|++++-.|. +++++..+|.++...||.++.+.|.+++++||+
T Consensus 231 ~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~ 310 (641)
T KOG0352|consen 231 TVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIA 310 (641)
T ss_pred HhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEE
Confidence 3343333211 112467999999999999999998 689999999999999999999999999999999
Q ss_pred EcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 474 ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 474 aTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
||..+.+|||-|+|++|||+++|.|..-|.|-.||+||.|+...|-+|+.-+|.+.++-|+
T Consensus 311 AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 311 ATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred EEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988876554443
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=3e-32 Score=295.93 Aligned_cols=291 Identities=17% Similarity=0.205 Sum_probs=199.5
Q ss_pred HHHHHHHHHHcCCC--EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC----C
Q 005313 200 IQAQSWPIALQSRD--IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS----S 273 (703)
Q Consensus 200 iQ~~ai~~il~grd--vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~----~ 273 (703)
+|.++++.+.++++ ++++||||+|||++|++|++.. ..++||++|+++|++|+++.++++... .
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~ 70 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPER 70 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCC
Confidence 59999999999874 7889999999999999988742 236899999999999999998887632 2
Q ss_pred CceEEEeeCCCCCC--ch----------------hhh--hcCCCcEEEECHHHHHHHHHhc----cc----cccCcccEE
Q 005313 274 RISCTCLYGGAPKG--PQ----------------LKD--IDRGVDIVVATPGRLNDILEMR----RI----SLNQVSYLV 325 (703)
Q Consensus 274 ~i~v~~~~gg~~~~--~~----------------~~~--l~~g~dIlV~Tp~~L~~~l~~~----~~----~l~~~~~IV 325 (703)
++.+..+.|..... .. ++. .....+|+++||+.|..++... .. .+..+++||
T Consensus 71 ~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV 150 (357)
T TIGR03158 71 DVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVI 150 (357)
T ss_pred CceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEE
Confidence 45555555542211 00 000 1235789999999997665421 11 246899999
Q ss_pred EecccccccCCC-----hHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHh--hcCceeccccc-------chhhhcc-
Q 005313 326 LDEADRMLDMGF-----EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL--LVNPVQVNIGN-------VDELAAN- 390 (703)
Q Consensus 326 iDEaH~ml~~gf-----~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~--l~~~~~i~i~~-------~~~~~~~- 390 (703)
|||+|.+..+.. ...+..++.......++|++|||++..+.+.+... +..++....+. .+.....
T Consensus 151 ~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 230 (357)
T TIGR03158 151 FDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNK 230 (357)
T ss_pred EecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccc
Confidence 999998764331 12333444444445789999999999888877765 33333221111 0000000
Q ss_pred --------ccceEEEEEeccchhHHHHHHHHHhc------CCCCeEEEEcCCHHHHHHHHHHHhc---CCceeEecCCCC
Q 005313 391 --------KAITQHIEVLAPMDKHRRLEQILRSQ------EPGSKIIVFCSTKKMCDQLARNLTR---QFGAAAIHGDKS 453 (703)
Q Consensus 391 --------~~i~~~~~~~~~~~k~~~L~~ll~~~------~~~~kvLVF~~s~~~a~~la~~L~~---~~~~~~lhg~~~ 453 (703)
..+...+.. ....+...+..+++.. ..+.++||||++++.++.+++.|++ .+.+..+||.++
T Consensus 231 ~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~ 309 (357)
T TIGR03158 231 TQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAP 309 (357)
T ss_pred ccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCC
Confidence 122222222 2333444343333221 3467999999999999999999985 256888999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccC
Q 005313 454 QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTG 510 (703)
Q Consensus 454 ~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRag 510 (703)
+.+|++++ +..|||||+++++||||+.+ +|| ++ |.+.+.|+||+||+|
T Consensus 310 ~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 310 KKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99987643 78899999999999999987 565 45 889999999999986
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.8e-32 Score=312.03 Aligned_cols=318 Identities=19% Similarity=0.208 Sum_probs=223.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.++|+|.|++..+...+..|+.++||+|||++|++|++..... ++.++||+|+++||.|+.+++..+...+++
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT-------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc-------CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 4456666666655555667999999999999999998766543 447999999999999999999999999999
Q ss_pred eEEEeeCCCC---CCchhhhhcCCCcEEEECHHHH-HHHHHhc------cccccCcccEEEecccccccCC---------
Q 005313 276 SCTCLYGGAP---KGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRMLDMG--------- 336 (703)
Q Consensus 276 ~v~~~~gg~~---~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~------~~~l~~~~~IViDEaH~ml~~g--------- 336 (703)
.+.+++++.. .....+....+++|+|+||++| .+++... ...+..+.++||||||.|+-..
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg 220 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISG 220 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeC
Confidence 9888776532 2223344446799999999999 6666432 2346789999999999875211
Q ss_pred -------ChHHHHHHHHHcCCC--------c-------------------------------------------------
Q 005313 337 -------FEPQIRKIVKEVPAR--------R------------------------------------------------- 352 (703)
Q Consensus 337 -------f~~~i~~il~~l~~~--------~------------------------------------------------- 352 (703)
+...+..++..+.+. .
T Consensus 221 ~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~d 300 (762)
T TIGR03714 221 APRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKD 300 (762)
T ss_pred CCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 111222222222211 1
Q ss_pred ------------------------------------------------------------eEEEEeccCcHHHHHHHHHh
Q 005313 353 ------------------------------------------------------------QTLMYTATWPREVRKIAADL 372 (703)
Q Consensus 353 ------------------------------------------------------------q~L~lSAT~p~~v~~l~~~~ 372 (703)
++.+||.|...+..++..-|
T Consensus 301 YiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY 380 (762)
T TIGR03714 301 YVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY 380 (762)
T ss_pred eEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh
Confidence 22333333322222222111
Q ss_pred hcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecC
Q 005313 373 LVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHG 450 (703)
Q Consensus 373 l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg 450 (703)
-.+ .+.+...... ..... ....+....+|...+...++.. ..+.++||||++++.++.++..|. .++++.++|+
T Consensus 381 ~l~--v~~IPt~kp~-~r~d~-~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 381 SLS--VVKIPTNKPI-IRIDY-PDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred CCC--EEEcCCCCCe-eeeeC-CCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 100 0111100000 00000 1123345556777777766543 567899999999999999999997 4789999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC---------CccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEE
Q 005313 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK---------DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTF 521 (703)
Q Consensus 451 ~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp---------~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~ 521 (703)
++.+.++..+..+++.| .|+|||++++||+||+ ++.+||++++|....+ +||+||+||.|.+|.+++|
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~ 533 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFF 533 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEE
Confidence 99999988888877776 6999999999999999 9999999999988777 9999999999999999999
Q ss_pred EecCCh
Q 005313 522 FGDQDS 527 (703)
Q Consensus 522 ~~~~d~ 527 (703)
++..|.
T Consensus 534 is~eD~ 539 (762)
T TIGR03714 534 VSLEDD 539 (762)
T ss_pred Eccchh
Confidence 987654
No 74
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=8.6e-33 Score=323.43 Aligned_cols=330 Identities=22% Similarity=0.305 Sum_probs=256.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005313 188 EVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAV 267 (703)
Q Consensus 188 ~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~ 267 (703)
.....|...+++-|.++|..++.|++++|.+|||.||++||.||++.. +...|||.|.++|++.+...+.
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~----------~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL----------GGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----------CCceEEeccHHHHHHHHHHhhh
Confidence 334458899999999999999999999999999999999999998765 3378999999999987666553
Q ss_pred HhcCCCCceEEEeeCCCCCCc---hhhhhcCC---CcEEEECHHHHHHHH--HhccccccC---cccEEEecccccccCC
Q 005313 268 KFGKSSRISCTCLYGGAPKGP---QLKDIDRG---VDIVVATPGRLNDIL--EMRRISLNQ---VSYLVLDEADRMLDMG 336 (703)
Q Consensus 268 k~~~~~~i~v~~~~gg~~~~~---~~~~l~~g---~dIlV~Tp~~L~~~l--~~~~~~l~~---~~~IViDEaH~ml~~g 336 (703)
..+|...++.+.....+ .+..+..+ ++|++.||+++...- ......+.. +.++||||||+...|+
T Consensus 326 ----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 326 ----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred ----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 34688888887776543 33344443 889999999986432 222233444 7899999999999987
Q ss_pred --ChHHHHHHHHHc--CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHH
Q 005313 337 --FEPQIRKIVKEV--PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI 412 (703)
Q Consensus 337 --f~~~i~~il~~l--~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 412 (703)
|++.++++.... -+...+|.+|||.+..+.+-+...|.-.....+. ......++...+...........+...
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEeccCccchHHHHHH
Confidence 888888764332 2337799999999888877666655432222111 112222333233222223444455566
Q ss_pred HHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEE
Q 005313 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV 491 (703)
Q Consensus 413 l~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI 491 (703)
++...+...+||||.++++|+.++..|.+ .+.+..||++|+..+|..|..+|..++++|+|||=++++|||.|+|+.||
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 66777888999999999999999999985 56889999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 492 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 492 ~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
||.+|.+.+.|+|-+||+||.|....|++|+...|...+..++
T Consensus 559 H~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 559 HYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred ECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHH
Confidence 9999999999999999999999999999999887665444443
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1e-31 Score=316.49 Aligned_cols=332 Identities=21% Similarity=0.292 Sum_probs=254.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHH
Q 005313 181 FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 260 (703)
Q Consensus 181 l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~ 260 (703)
.+..+..++.+.+...||.+|.+|+..+.+|+|+||+.+||||||++|++|++.++.+.... ++|||.||++|++
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-----~AL~lYPtnALa~ 129 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-----RALLLYPTNALAN 129 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-----cEEEEechhhhHh
Confidence 45556888999999999999999999999999999999999999999999999999885443 8899999999999
Q ss_pred HHHHHHHHhcCCCC--ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc----cccccCcccEEEeccccccc
Q 005313 261 QIQDEAVKFGKSSR--ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR----RISLNQVSYLVLDEADRMLD 334 (703)
Q Consensus 261 Q~~~~~~k~~~~~~--i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~----~~~l~~~~~IViDEaH~ml~ 334 (703)
.+.+.++++....+ +.+....|+++..+....+...++||++||++|..++... .+.+.+++||||||+|..-
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr- 208 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR- 208 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc-
Confidence 99999999988877 6677777777665554556778999999999998755432 3446779999999999642
Q ss_pred CCChH-------HHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEecc-----
Q 005313 335 MGFEP-------QIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP----- 402 (703)
Q Consensus 335 ~gf~~-------~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~----- 402 (703)
--|.. .+..++...+...|+|++|||+. +..+++.+++.......+.... .... . .++....+
T Consensus 209 Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~-np~e~~~~l~~~~f~~~v~~~g--~~~~-~-~~~~~~~p~~~~~ 283 (851)
T COG1205 209 GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLA-NPGEFAEELFGRDFEVPVDEDG--SPRG-L-RYFVRREPPIREL 283 (851)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCceEEEEecccc-ChHHHHHHhcCCcceeeccCCC--CCCC-c-eEEEEeCCcchhh
Confidence 22333 33334444566889999999985 3455666666655544322111 1111 1 11111111
Q ss_pred -----chhHHHHHHHHHh-cCCCCeEEEEcCCHHHHHHHHH-----HHhcC----CceeEecCCCCHHHHHHHHHHHhcC
Q 005313 403 -----MDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLAR-----NLTRQ----FGAAAIHGDKSQSERDYVLNQFRAG 467 (703)
Q Consensus 403 -----~~k~~~L~~ll~~-~~~~~kvLVF~~s~~~a~~la~-----~L~~~----~~~~~lhg~~~~~eR~~vl~~F~~G 467 (703)
..+...+..++.. ...+-++|+||.+++.++.+.. ..... ..+..+++++...+|.+++..|+.|
T Consensus 284 ~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g 363 (851)
T COG1205 284 AESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG 363 (851)
T ss_pred hhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC
Confidence 1333334444332 2456799999999999999962 22223 3578899999999999999999999
Q ss_pred CCcEEEEcccccccCCCCCccEEEEecCCC-CHHHHHHHHhccCCCCCccEEEEEEe
Q 005313 468 RSPVLVATDVAARGLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFG 523 (703)
Q Consensus 468 ~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~-s~~~yiQriGRagR~G~~g~~i~~~~ 523 (703)
++.++++|.++.-||||-+++.||.+.+|. +..+++|+.||+||.++....++.+.
T Consensus 364 ~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 364 ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred CccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 999999999999999999999999999999 89999999999999997666666655
No 76
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=7.1e-32 Score=305.26 Aligned_cols=332 Identities=22% Similarity=0.315 Sum_probs=248.7
Q ss_pred CCCCCcHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhccC---CCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005313 193 GFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRN---DPRLGPTVLVLSPTRELATQIQDEAVK 268 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~---~~~~g~~vLIl~PtreLa~Q~~~~~~k 268 (703)
+|.++..+|.+++|.+... .|+|||||||+|||.+|+|.++..+..... ......++++|+|+++||.++.+.+.+
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 7788999999999999865 699999999999999999999998886221 122356999999999999999999988
Q ss_pred hcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc----cccCcccEEEecccccccCCChHHHHHH
Q 005313 269 FGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI----SLNQVSYLVLDEADRMLDMGFEPQIRKI 344 (703)
Q Consensus 269 ~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~----~l~~~~~IViDEaH~ml~~gf~~~i~~i 344 (703)
-+...++.|..++|+....... ...|+|||+|||++ |.+.++.. .+..+.+|||||+| |+.....+.++.|
T Consensus 187 kl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVH-lLhd~RGpvlEti 261 (1230)
T KOG0952|consen 187 KLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVH-LLHDDRGPVLETI 261 (1230)
T ss_pred hcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeeh-hhcCcccchHHHH
Confidence 8888899999999987543321 23389999999998 44432221 25678999999999 5555577777777
Q ss_pred HHHc-------CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccc---hhHH-----HH
Q 005313 345 VKEV-------PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM---DKHR-----RL 409 (703)
Q Consensus 345 l~~l-------~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~---~k~~-----~L 409 (703)
+..+ ....++|++|||+|+ .++++..+-.+ ....+-.++.......+.+.+...... .+.+ ..
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn-~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVN-PYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCC-CccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 6553 457889999999995 55555444333 222333445555555566666554443 1111 23
Q ss_pred HHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcC------------------------CceeEecCCCCHHHHHHHHHHHh
Q 005313 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ------------------------FGAAAIHGDKSQSERDYVLNQFR 465 (703)
Q Consensus 410 ~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~------------------------~~~~~lhg~~~~~eR~~vl~~F~ 465 (703)
.++++....+..+||||.++......|+.|.+. .+..++|++|...+|..+.+.|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 344455567899999999999988888888431 35778999999999999999999
Q ss_pred cCCCcEEEEcccccccCCCCCccEEEE----ecCCC------CHHHHHHHHhccCCCC--CccEEEEEEecCChHHHH
Q 005313 466 AGRSPVLVATDVAARGLDIKDIRVVVN----YDFPT------GVEDYVHRIGRTGRAG--ATGVAYTFFGDQDSRYAS 531 (703)
Q Consensus 466 ~G~~~ILVaTdv~~~GIDIp~v~~VI~----~d~P~------s~~~yiQriGRagR~G--~~g~~i~~~~~~d~~~~~ 531 (703)
.|.++||+||..++.|+|+|.-.+||- ||.-. ++-+.+|.+|||||-. ..|.++++.+.+....+.
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 999999999999999999998766662 44322 5778999999999964 568888777655444433
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.5e-31 Score=304.27 Aligned_cols=316 Identities=19% Similarity=0.204 Sum_probs=228.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..|+++|..+...+++|+ |+.++||+|||++|++|++..... +..++||+||++||.|.++++.++...++
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-------G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-------GKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-------CCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 378999999988888776 899999999999999998654443 34699999999999999999999999999
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhc------cccccCcccEEEecccccccCC-Ch--------
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRMLDMG-FE-------- 338 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~------~~~l~~~~~IViDEaH~ml~~g-f~-------- 338 (703)
+.+.+++++....... ....++|+|+|+.+| .+++..+ .+.+..+.++||||+|+|+-.. ..
T Consensus 126 Lsv~~i~g~~~~~~r~--~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 126 LSVGLILSGMSPEERR--EAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred CeEEEEeCCCCHHHHH--HhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 9999999987654332 333489999999999 8888765 3457889999999999876311 00
Q ss_pred -------HHHHHHHHHcCC--------Cc---------------------------------------------------
Q 005313 339 -------PQIRKIVKEVPA--------RR--------------------------------------------------- 352 (703)
Q Consensus 339 -------~~i~~il~~l~~--------~~--------------------------------------------------- 352 (703)
.....+...+.. +.
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYi 283 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYI 283 (745)
T ss_pred CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 001111111110 00
Q ss_pred ----------------------------------------------------------eEEEEeccCcHHHHHHHHHhhc
Q 005313 353 ----------------------------------------------------------QTLMYTATWPREVRKIAADLLV 374 (703)
Q Consensus 353 ----------------------------------------------------------q~L~lSAT~p~~v~~l~~~~l~ 374 (703)
++.+||.|...+..++..-|-.
T Consensus 284 V~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 363 (745)
T TIGR00963 284 VRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL 363 (745)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC
Confidence 1223333332222222111111
Q ss_pred CceecccccchhhhccccceEEEEEeccchhHHHHHHHH-HhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCC
Q 005313 375 NPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDK 452 (703)
Q Consensus 375 ~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll-~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~ 452 (703)
+-+. +...... ....... .......+|...+...+ +....+.++||||++++.++.+++.|.+ ++++..+|++
T Consensus 364 ~vv~--IPtnkp~-~R~d~~d-~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~- 438 (745)
T TIGR00963 364 EVVV--VPTNRPV-IRKDLSD-LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK- 438 (745)
T ss_pred CEEE--eCCCCCe-eeeeCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC-
Confidence 1111 1000000 0000111 11233445665555444 4456789999999999999999999984 7899999998
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC-------ccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecC
Q 005313 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD-------IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 453 ~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~-------v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
+.+|+..+..|..+...|+|||++++||+||+. ..+||++++|.|...|.|++||+||.|.+|.+.+|++..
T Consensus 439 -q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 439 -NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred -hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 889999999999999999999999999999998 459999999999999999999999999999999999877
Q ss_pred Ch
Q 005313 526 DS 527 (703)
Q Consensus 526 d~ 527 (703)
|.
T Consensus 518 D~ 519 (745)
T TIGR00963 518 DN 519 (745)
T ss_pred HH
Confidence 64
No 78
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=8.9e-31 Score=309.26 Aligned_cols=334 Identities=19% Similarity=0.160 Sum_probs=218.2
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 005313 196 SPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273 (703)
Q Consensus 196 ~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~ 273 (703)
.|.|||.+++..++.. ..+|+..++|.|||+.+.+.+...+... ...++|||||. .|+.||..++.+.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-----~~~rvLIVvP~-sL~~QW~~El~~kF~-- 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-----RAERVLILVPE-TLQHQWLVEMLRRFN-- 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-----CCCcEEEEcCH-HHHHHHHHHHHHHhC--
Confidence 6999999999887765 4789999999999998766554444332 12389999997 899999999965432
Q ss_pred CceEEEeeCCCCCCchh--hhhcCCCcEEEECHHHHHHHHH-hccccccCcccEEEecccccccCC--ChHHHHHHHHHc
Q 005313 274 RISCTCLYGGAPKGPQL--KDIDRGVDIVVATPGRLNDILE-MRRISLNQVSYLVLDEADRMLDMG--FEPQIRKIVKEV 348 (703)
Q Consensus 274 ~i~v~~~~gg~~~~~~~--~~l~~g~dIlV~Tp~~L~~~l~-~~~~~l~~~~~IViDEaH~ml~~g--f~~~i~~il~~l 348 (703)
+...++.+........ .......+++|+|++.|...-. ...+.-..+++|||||||++.... -...++.+....
T Consensus 224 -l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 224 -LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred -CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 3332222221100000 0011236899999998865221 122333478999999999986311 122233332222
Q ss_pred CCCceEEEEeccCcH-HHH-------------------------------HHHHHhhcCce-------------------
Q 005313 349 PARRQTLMYTATWPR-EVR-------------------------------KIAADLLVNPV------------------- 377 (703)
Q Consensus 349 ~~~~q~L~lSAT~p~-~v~-------------------------------~l~~~~l~~~~------------------- 377 (703)
.....+|++|||+-. ... +.+..++....
T Consensus 303 ~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 303 EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIE 382 (956)
T ss_pred hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchh
Confidence 334568999999731 000 00010100000
Q ss_pred -------------------------------ecccccchhh-h-ccccceEEEE--------------------------
Q 005313 378 -------------------------------QVNIGNVDEL-A-ANKAITQHIE-------------------------- 398 (703)
Q Consensus 378 -------------------------------~i~i~~~~~~-~-~~~~i~~~~~-------------------------- 398 (703)
.+.+.+.... . ........+.
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe 462 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPE 462 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHH
Confidence 0000000000 0 0000000000
Q ss_pred -----------EeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh--cCCceeEecCCCCHHHHHHHHHHHh
Q 005313 399 -----------VLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT--RQFGAAAIHGDKSQSERDYVLNQFR 465 (703)
Q Consensus 399 -----------~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~--~~~~~~~lhg~~~~~eR~~vl~~F~ 465 (703)
......|.+.|..+++... ..|+||||+++..++.+++.|. .++.+..+||+|++.+|+++++.|+
T Consensus 463 ~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~-~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~ 541 (956)
T PRK04914 463 QIYQEFEDNATWWNFDPRVEWLIDFLKSHR-SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA 541 (956)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHHhcC-CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh
Confidence 0111224455666666543 5799999999999999999995 3688999999999999999999999
Q ss_pred cC--CCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHh
Q 005313 466 AG--RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 539 (703)
Q Consensus 466 ~G--~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~ 539 (703)
++ .++|||||+++++|+|++.+++|||||+|++++.|.|||||++|.|+++.+.+++...+....+.+.+++.+
T Consensus 542 ~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 542 DEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred cCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 74 699999999999999999999999999999999999999999999999988888776665556666665544
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.7e-30 Score=288.08 Aligned_cols=351 Identities=23% Similarity=0.322 Sum_probs=273.9
Q ss_pred HHHHHHHH-HCCCCCCcHHHHHHHHHHHcC------CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 183 PELLREVH-NAGFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 183 ~~l~~~l~-~~g~~~p~piQ~~ai~~il~g------rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
.++++.+. ...| +||..|++++..|... .+-|+++..|||||++++++++..+.. |..+.+++||
T Consensus 249 ~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-------G~Q~ALMAPT 320 (677)
T COG1200 249 GELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-------GYQAALMAPT 320 (677)
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-------CCeeEEeccH
Confidence 34444443 3344 8999999999999875 256999999999999999999888876 6789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEeeCCCCCC---chhhhhcCC-CcEEEECHHHHHHHHHhccccccCcccEEEecccc
Q 005313 256 RELATQIQDEAVKFGKSSRISCTCLYGGAPKG---PQLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331 (703)
Q Consensus 256 reLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~---~~~~~l~~g-~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ 331 (703)
.-||.|.++.+.+++...++.+..++|..... ..+..+..+ .+|||+|..-+.+ .+.++++.+||+||=|+
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEecccc
Confidence 99999999999999999999999999876543 344455565 9999999776644 67788999999999999
Q ss_pred cccCCChHHHHHHHHHcCC-CceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHH
Q 005313 332 MLDMGFEPQIRKIVKEVPA-RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410 (703)
Q Consensus 332 ml~~gf~~~i~~il~~l~~-~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 410 (703)
|.-.-+..+..... ...+|+||||+-+.. ++...+.+-. +...++++... .+-...++......+.+.
T Consensus 396 -----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDld---vS~IdElP~GR-kpI~T~~i~~~~~~~v~e 464 (677)
T COG1200 396 -----FGVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLD---VSIIDELPPGR-KPITTVVIPHERRPEVYE 464 (677)
T ss_pred -----ccHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhcccc---chhhccCCCCC-CceEEEEeccccHHHHHH
Confidence 45555555655555 678999999964433 2222333321 22223443331 122233444455555566
Q ss_pred HHHHhcCCCCeEEEEcCCHH--------HHHHHHHHHhc---CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 005313 411 QILRSQEPGSKIIVFCSTKK--------MCDQLARNLTR---QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 479 (703)
Q Consensus 411 ~ll~~~~~~~kvLVF~~s~~--------~a~~la~~L~~---~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~ 479 (703)
.+.++..++.++.|.|+-++ .+..+++.|+. .+.+..+||.|..++++.++++|++|+++|||||.+++
T Consensus 465 ~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIE 544 (677)
T COG1200 465 RIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIE 544 (677)
T ss_pred HHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEE
Confidence 66667778899999998665 34455555553 45689999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEecC-CCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHHHHHHHcCCC
Q 005313 480 RGLDIKDIRVVVNYDF-PTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGG 557 (703)
Q Consensus 480 ~GIDIp~v~~VI~~d~-P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L~~la~r~~g 557 (703)
.|||+|+.+++|+.+. -....+..|..||+||......|++++.+...+..++-++++.+..+-+.-.-+||..|+-|
T Consensus 545 VGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLklRGpG 623 (677)
T COG1200 545 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKLRGPG 623 (677)
T ss_pred ecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhccCCc
Confidence 9999999999888765 34789999999999999999999999998887888899999999999999999999988754
No 80
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=2.5e-30 Score=287.88 Aligned_cols=296 Identities=25% Similarity=0.310 Sum_probs=204.3
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 195 SSPTPIQAQSWPIALQ----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~----grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
..|++||++++..+.+ .+..++++|||+|||++++..+ ..+.. .+|||||+++|+.||.+.+.++.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~-~~~~~---------~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAI-AELKR---------STLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHH-HHhcC---------CEEEEECcHHHHHHHHHHHHHhc
Confidence 4799999999999998 8899999999999998766533 22222 49999999999999998777765
Q ss_pred CCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCC
Q 005313 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350 (703)
Q Consensus 271 ~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~ 350 (703)
... ..+. .+++..+.. .. ..|+|+|++++........+....+++||||||||+.... ...+...+..
T Consensus 105 ~~~-~~~g-~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~~ 172 (442)
T COG1061 105 LLN-DEIG-IYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLSA 172 (442)
T ss_pred CCc-cccc-eecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhhhc
Confidence 433 1122 223322111 11 3699999999977532223344579999999999986543 3444444433
Q ss_pred CceEEEEeccCcHHHHHHHHHhh--cCceecccccchhhhccccceEEEEEecc--------------------------
Q 005313 351 RRQTLMYTATWPREVRKIAADLL--VNPVQVNIGNVDELAANKAITQHIEVLAP-------------------------- 402 (703)
Q Consensus 351 ~~q~L~lSAT~p~~v~~l~~~~l--~~~~~i~i~~~~~~~~~~~i~~~~~~~~~-------------------------- 402 (703)
...+|+||||+++........+. ..++...+...+.+......+..+..+..
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 33389999998765522222211 11233333222211111111111111100
Q ss_pred --------------chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHHHHHHHHhcCC
Q 005313 403 --------------MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGR 468 (703)
Q Consensus 403 --------------~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~~vl~~F~~G~ 468 (703)
..+...+..++.....+.++||||.++.+++.++..|...-.+..+.++.+..+|..+++.|+.|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCC
Confidence 011122222333222467999999999999999999985433889999999999999999999999
Q ss_pred CcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCC
Q 005313 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA 512 (703)
Q Consensus 469 ~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~ 512 (703)
+++||++.++.+|+|+|+++++|....+.|...|+||+||..|.
T Consensus 333 ~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 333 IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999993
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=3.2e-30 Score=308.29 Aligned_cols=301 Identities=19% Similarity=0.291 Sum_probs=208.5
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC----cHHHHHHHHHHHHH-hcCC
Q 005313 198 TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP----TRELATQIQDEAVK-FGKS 272 (703)
Q Consensus 198 ~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P----treLa~Q~~~~~~k-~~~~ 272 (703)
+.+..+++..+..++.+||+++||||||. .+|.+.+.... .....+++.-| +++||.++.+++.. ++..
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR----GVKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 45566677777777778888999999998 57755443211 11124444557 46888898888875 4443
Q ss_pred CCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccc-ccccCCChHH-HHHHHHHcCC
Q 005313 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD-RMLDMGFEPQ-IRKIVKEVPA 350 (703)
Q Consensus 273 ~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH-~ml~~gf~~~-i~~il~~l~~ 350 (703)
.++.+- ... .....++|+|+|+++|++.+.... .+.++++||||||| ++++.+|... +..++.. .+
T Consensus 150 VGY~vr-------f~~---~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rp 217 (1294)
T PRK11131 150 VGYKVR-------FND---QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RP 217 (1294)
T ss_pred eceeec-------Ccc---ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CC
Confidence 333221 111 123458999999999999887654 48999999999999 6899888653 3333322 35
Q ss_pred CceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccc---hhHHHHHHH---HHh--cCCCCeE
Q 005313 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM---DKHRRLEQI---LRS--QEPGSKI 422 (703)
Q Consensus 351 ~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~---~k~~~L~~l---l~~--~~~~~kv 422 (703)
+.|+|+||||++. ..+...+...+ .+.+.... ..+...+...... .+.+.+..+ +.. ....+.+
T Consensus 218 dlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdI 289 (1294)
T PRK11131 218 DLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDI 289 (1294)
T ss_pred CceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCE
Confidence 6899999999974 34444444344 33332211 1133333322211 122233222 221 2345689
Q ss_pred EEEcCCHHHHHHHHHHHhc-CC---ceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecC---
Q 005313 423 IVFCSTKKMCDQLARNLTR-QF---GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF--- 495 (703)
Q Consensus 423 LVF~~s~~~a~~la~~L~~-~~---~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~--- 495 (703)
||||+++++++.+++.|.+ .+ .+..+|+++++++|..+++. .+..+|||||+++++|||||+|++||++++
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 9999999999999999975 33 36789999999999999886 578899999999999999999999999863
Q ss_pred ------------C---CCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 496 ------------P---TGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 496 ------------P---~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
| .|.+.|.||+||+||. .+|.||.|+++.+.
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 3 4568999999999999 78999999986543
No 82
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=259.48 Aligned_cols=330 Identities=21% Similarity=0.330 Sum_probs=248.3
Q ss_pred CCHHHHHHHHHC-CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 181 FPPELLREVHNA-GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 181 l~~~l~~~l~~~-g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
...+..+.|++. ....++|.|..+|+..+.+++++++.|||.||++||.+|++.. ...+|||||...|+
T Consensus 78 ws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a----------dg~alvi~plislm 147 (695)
T KOG0353|consen 78 WSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA----------DGFALVICPLISLM 147 (695)
T ss_pred CchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc----------CCceEeechhHHHH
Confidence 334444444432 4567899999999999999999999999999999999998764 23789999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEeeCCCCCCchhh---hh---cCCCcEEEECHHHHHHHHH-----hccccccCcccEEEec
Q 005313 260 TQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DI---DRGVDIVVATPGRLNDILE-----MRRISLNQVSYLVLDE 328 (703)
Q Consensus 260 ~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l---~~g~dIlV~Tp~~L~~~l~-----~~~~~l~~~~~IViDE 328 (703)
+.+.-.++.++. ....+.....+.+..+ .+ .....+++.||+++...-. ...+....+.+|.|||
T Consensus 148 edqil~lkqlgi----~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaide 223 (695)
T KOG0353|consen 148 EDQILQLKQLGI----DASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDE 223 (695)
T ss_pred HHHHHHHHHhCc----chhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecc
Confidence 998888888754 3333333333322211 11 1237799999999854321 1234566789999999
Q ss_pred ccccccCC--ChHHHHH--HHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEec--c
Q 005313 329 ADRMLDMG--FEPQIRK--IVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA--P 402 (703)
Q Consensus 329 aH~ml~~g--f~~~i~~--il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~--~ 402 (703)
+|+...|| |++.+.. +++..-+...+|+++||....+...+.+.+.-...+.+... ....++...+.... .
T Consensus 224 vhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~---fnr~nl~yev~qkp~n~ 300 (695)
T KOG0353|consen 224 VHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG---FNRPNLKYEVRQKPGNE 300 (695)
T ss_pred eeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc---cCCCCceeEeeeCCCCh
Confidence 99999987 7776654 35554566779999999988888777776643333322111 11122222222222 2
Q ss_pred chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 005313 403 MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARG 481 (703)
Q Consensus 403 ~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~G 481 (703)
.+-.+.+..+++....++..||||-++++|+.++..|+. ++.+..+|..|.+.+|.-+-+.|..|+++|+|+|-++.+|
T Consensus 301 dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmg 380 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMG 380 (695)
T ss_pred HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeeccc
Confidence 233455566666666788899999999999999999984 6788899999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCHHHHHH-------------------------------------------HHhccCCCCCccEE
Q 005313 482 LDIKDIRVVVNYDFPTGVEDYVH-------------------------------------------RIGRTGRAGATGVA 518 (703)
Q Consensus 482 IDIp~v~~VI~~d~P~s~~~yiQ-------------------------------------------riGRagR~G~~g~~ 518 (703)
||-|+|++||+..+|.+++.|.| -.||+||.+.+..|
T Consensus 381 idkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 99999999999999999999999 57999999999999
Q ss_pred EEEEecCCh
Q 005313 519 YTFFGDQDS 527 (703)
Q Consensus 519 i~~~~~~d~ 527 (703)
++|+.-.|.
T Consensus 461 ilyy~~~di 469 (695)
T KOG0353|consen 461 ILYYGFADI 469 (695)
T ss_pred EEEechHHH
Confidence 999975553
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.1e-28 Score=287.55 Aligned_cols=311 Identities=20% Similarity=0.241 Sum_probs=214.9
Q ss_pred CCcHHHHHHHHHHHcC---CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 196 SPTPIQAQSWPIALQS---RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 196 ~p~piQ~~ai~~il~g---rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
.|+++|+++++.++++ +++++.++||+|||.+|+.++...+.. +.++|||+|+++|+.|+.+.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-------g~~vLvLvPt~~L~~Q~~~~l~~~f-- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-------GKQALVLVPEIALTPQMLARFRARF-- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHh--
Confidence 6899999999999984 789999999999999998877766654 4589999999999999999998864
Q ss_pred CCceEEEeeCCCCCCch---hhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCCh-H--HHH--H
Q 005313 273 SRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE-P--QIR--K 343 (703)
Q Consensus 273 ~~i~v~~~~gg~~~~~~---~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~-~--~i~--~ 343 (703)
+..+..++++....+. |..+.. ..+|||+|+..+. ..+.++++|||||+|........ + ... .
T Consensus 215 -g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va 286 (679)
T PRK05580 215 -GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA 286 (679)
T ss_pred -CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH
Confidence 4567788887665433 333333 4799999998763 45778999999999986543211 1 111 2
Q ss_pred HHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccc----------hhHHHHHHHH
Q 005313 344 IVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM----------DKHRRLEQIL 413 (703)
Q Consensus 344 il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~----------~k~~~L~~ll 413 (703)
++.....+.++|++|||++.+....+.. .....+.+... . ...... .+..+... -....+..+.
T Consensus 287 ~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r--~-~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~~i~ 360 (679)
T PRK05580 287 VVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKR--A-GGARLP-EVEIIDMRELLRGENGSFLSPPLLEAIK 360 (679)
T ss_pred HHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccc--c-ccCCCC-eEEEEechhhhhhcccCCCCHHHHHHHH
Confidence 3334456789999999987655444321 11111111110 0 000000 11111100 0112233333
Q ss_pred HhcCCCCeEEEEcCCH------------------------------------------------------------HHHH
Q 005313 414 RSQEPGSKIIVFCSTK------------------------------------------------------------KMCD 433 (703)
Q Consensus 414 ~~~~~~~kvLVF~~s~------------------------------------------------------------~~a~ 433 (703)
+....++++|||++.+ ..++
T Consensus 361 ~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e 440 (679)
T PRK05580 361 QRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTE 440 (679)
T ss_pred HHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHH
Confidence 4446667889987642 1445
Q ss_pred HHHHHHhc---CCceeEecCCCC--HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEe--cCCCC--------
Q 005313 434 QLARNLTR---QFGAAAIHGDKS--QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNY--DFPTG-------- 498 (703)
Q Consensus 434 ~la~~L~~---~~~~~~lhg~~~--~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~--d~P~s-------- 498 (703)
.+++.|.+ ...+..+|+++. +.++++++++|++|+++|||+|+++++|+|+|+|++|+.+ |.+.+
T Consensus 441 ~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~E 520 (679)
T PRK05580 441 RLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASE 520 (679)
T ss_pred HHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHH
Confidence 66666665 456889999986 4679999999999999999999999999999999998655 44332
Q ss_pred --HHHHHHHHhccCCCCCccEEEEEEecCChHH
Q 005313 499 --VEDYVHRIGRTGRAGATGVAYTFFGDQDSRY 529 (703)
Q Consensus 499 --~~~yiQriGRagR~G~~g~~i~~~~~~d~~~ 529 (703)
...|+|++||+||.++.|.+++.....+...
T Consensus 521 r~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~ 553 (679)
T PRK05580 521 RTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPV 553 (679)
T ss_pred HHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHH
Confidence 3578999999999999999998776555443
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=9.7e-28 Score=281.97 Aligned_cols=354 Identities=20% Similarity=0.253 Sum_probs=225.3
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 005313 194 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273 (703)
Q Consensus 194 ~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~ 273 (703)
..+|+|+|+.+.........+||.||||+|||.++++.+...+... ....++|..||+++++|+++.++++....
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~-----~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG-----LADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 4589999998865544456688899999999999888766544331 12489999999999999999887643221
Q ss_pred --CceEEEeeCCCCCCchh------------------------hhhcC---CCcEEEECHHHHHHHHH-hccccccC---
Q 005313 274 --RISCTCLYGGAPKGPQL------------------------KDIDR---GVDIVVATPGRLNDILE-MRRISLNQ--- 320 (703)
Q Consensus 274 --~i~v~~~~gg~~~~~~~------------------------~~l~~---g~dIlV~Tp~~L~~~l~-~~~~~l~~--- 320 (703)
...+.+++|........ ....+ -.+|+|+|++.++..+. .+...+..
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 23566666654321110 00001 16899999988875433 22222222
Q ss_pred -cccEEEecccccccCCChHHHHHHHHHc-CCCceEEEEeccCcHHHHHHHHHhhcCcee---------ccccc---chh
Q 005313 321 -VSYLVLDEADRMLDMGFEPQIRKIVKEV-PARRQTLMYTATWPREVRKIAADLLVNPVQ---------VNIGN---VDE 386 (703)
Q Consensus 321 -~~~IViDEaH~ml~~gf~~~i~~il~~l-~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~---------i~i~~---~~~ 386 (703)
-++|||||+|.+ +.-....+..+++.+ .....+|+||||+|...++.+...+..... +.... ...
T Consensus 439 a~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~ 517 (878)
T PRK09694 439 GRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQR 517 (878)
T ss_pred ccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccccee
Confidence 258999999965 332334455555543 235679999999998887654443221100 00000 000
Q ss_pred --hhc-----cccceEEEEEe--cc-chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcC----CceeEecCCC
Q 005313 387 --LAA-----NKAITQHIEVL--AP-MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ----FGAAAIHGDK 452 (703)
Q Consensus 387 --~~~-----~~~i~~~~~~~--~~-~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~----~~~~~lhg~~ 452 (703)
... .......+... .. ......+..+++....+.++||||||++.|+.+++.|++. +.+..+|+.+
T Consensus 518 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf 597 (878)
T PRK09694 518 FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARF 597 (878)
T ss_pred eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCC
Confidence 000 00001111111 11 1223445555555567789999999999999999999864 4689999999
Q ss_pred CHHHH----HHHHHHH-hcCC---CcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCc----c----
Q 005313 453 SQSER----DYVLNQF-RAGR---SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGAT----G---- 516 (703)
Q Consensus 453 ~~~eR----~~vl~~F-~~G~---~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~----g---- 516 (703)
+..+| +++++.| ++++ ..|||||+++++|||| ++++||....| .+.++||+||++|.+.+ +
T Consensus 598 ~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~p 674 (878)
T PRK09694 598 TLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEIP 674 (878)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcCc
Confidence 99999 4577788 6666 4799999999999999 67999988777 78999999999998752 2
Q ss_pred EEEEEEecC-----------ChHHHHHHHHHHHhcc---CcccHHHHHHHHcCC
Q 005313 517 VAYTFFGDQ-----------DSRYASDLIKLLEGAK---QQVPRELRDMASRGG 556 (703)
Q Consensus 517 ~~i~~~~~~-----------d~~~~~~l~~~l~~~~---~~v~~~L~~la~r~~ 556 (703)
.++++..+. +...+..-.++|.+.. -.+|..+..+.....
T Consensus 675 ~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve~vY 728 (878)
T PRK09694 675 VATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIESVY 728 (878)
T ss_pred eEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHHHHh
Confidence 334432211 1122233345566654 356777777766544
No 85
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=9.8e-29 Score=247.49 Aligned_cols=202 Identities=50% Similarity=0.845 Sum_probs=182.5
Q ss_pred CcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 176 f~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
|+++++++.+++.+.+.++..|+++|.++++.+++++++++++|||+|||++|+++++..+..... ..++++||++|+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--~~~~~viii~p~ 78 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--KDGPQALILAPT 78 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--cCCceEEEEcCC
Confidence 678899999999999999999999999999999999999999999999999999999988876421 135699999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccC
Q 005313 256 RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335 (703)
Q Consensus 256 reLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~ 335 (703)
++|+.|+.+.++++....++.+.+++++.........+...++|+|+|++.|.+++......+.++++|||||+|++.+.
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhcc
Confidence 99999999999999887888999999988776666666667999999999999999887788889999999999999988
Q ss_pred CChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceec
Q 005313 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQV 379 (703)
Q Consensus 336 gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i 379 (703)
++...+..++..++..+|++++|||+++.+..++..++.+++.+
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 89999999999999999999999999999999999998887754
No 86
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.6e-27 Score=277.58 Aligned_cols=351 Identities=22% Similarity=0.266 Sum_probs=271.4
Q ss_pred CHHHHHHHHHC-CCCCCcHHHHHHHHHHHcC------CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 182 PPELLREVHNA-GFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 182 ~~~l~~~l~~~-g~~~p~piQ~~ai~~il~g------rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
+.+.++.+... .| .-|+-|..||..++.. -|-|||+..|.|||.+++-+++..+.. |+.|.||||
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-------GKQVAvLVP 651 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-------GKQVAVLVP 651 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-------CCeEEEEcc
Confidence 34444444432 33 6699999999999864 388999999999999999999888766 679999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCc---hhhhhcCC-CcEEEECHHHHHHHHHhccccccCcccEEEeccc
Q 005313 255 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330 (703)
Q Consensus 255 treLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~---~~~~l~~g-~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH 330 (703)
|--||+|.++.|++-+....+++..+.-=....+ .+..+..| .||||+|+.-| ...+.++++.+|||||=|
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechh
Confidence 9999999999999998999998887765444333 34445554 99999996555 346778999999999999
Q ss_pred ccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHH
Q 005313 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410 (703)
Q Consensus 331 ~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 410 (703)
+ |.-.-++-++.+..+.-+|-||||+-+....+...-+++-..+.....+.++ ...++.+.+....-.
T Consensus 727 R-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p-------V~T~V~~~d~~~ire 794 (1139)
T COG1197 727 R-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP-------VKTFVSEYDDLLIRE 794 (1139)
T ss_pred h-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc-------eEEEEecCChHHHHH
Confidence 9 5666677788888999999999998666666665555554444433322211 122334444444445
Q ss_pred HHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcC---CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 005313 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 487 (703)
Q Consensus 411 ~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~---~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v 487 (703)
.++++...++.+...+|..+..+.+++.|++- ..+++.||.|+..+-+.++..|.+|+.+|||||.+++.|||||++
T Consensus 795 AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnA 874 (1139)
T COG1197 795 AILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNA 874 (1139)
T ss_pred HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCC
Confidence 56677788899999999999999999999874 458899999999999999999999999999999999999999999
Q ss_pred cEEEEecCC-CCHHHHHHHHhccCCCCCccEEEEEEecCC--hHHHHHHHHHHH---hccCcccHHHHHHHHcCCC
Q 005313 488 RVVVNYDFP-TGVEDYVHRIGRTGRAGATGVAYTFFGDQD--SRYASDLIKLLE---GAKQQVPRELRDMASRGGG 557 (703)
Q Consensus 488 ~~VI~~d~P-~s~~~yiQriGRagR~G~~g~~i~~~~~~d--~~~~~~l~~~l~---~~~~~v~~~L~~la~r~~g 557 (703)
+++|.-+-- ....+..|..||+||..+.+.||.++-+.+ .+.+.+-++.++ +...-+.-.++||..||.|
T Consensus 875 NTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaG 950 (1139)
T COG1197 875 NTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAG 950 (1139)
T ss_pred ceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhccccc
Confidence 998875543 478999999999999999999999987542 334444444443 4556777888888888754
No 87
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=273.56 Aligned_cols=340 Identities=22% Similarity=0.305 Sum_probs=248.4
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhccCCC----CCCCEEEEEc
Q 005313 179 TGFPPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDP----RLGPTVLVLS 253 (703)
Q Consensus 179 ~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~----~~g~~vLIl~ 253 (703)
..+|.+-..++. |+.++.++|....+.++.+ .++++|||||+|||.++++.+++.+....... -...++++++
T Consensus 294 selP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 294 SELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred cCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 356667777776 6677999999999999987 58999999999999999999999887754421 1234899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcc---ccccCcccEEEeccc
Q 005313 254 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR---ISLNQVSYLVLDEAD 330 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~---~~l~~~~~IViDEaH 330 (703)
|.++|++.|...|.+.....+|.|...+|+...... . ..+..|+|+||+++ |.+.++. ...+-++++||||.|
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~--q-ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE--Q-IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhh--h-hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhh
Confidence 999999999999999999999999999998653322 1 12378999999998 4444332 223457899999999
Q ss_pred ccccCCChHHHHHHHHHc-------CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccc
Q 005313 331 RMLDMGFEPQIRKIVKEV-------PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM 403 (703)
Q Consensus 331 ~ml~~gf~~~i~~il~~l-------~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~ 403 (703)
|+.....+.+..|+... ...+.++++|||+|+- .+...-+..++..+. .++.......+.|.+.-+...
T Consensus 448 -LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf--~fd~syRpvPL~qq~Igi~ek 523 (1674)
T KOG0951|consen 448 -LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLF--YFDSSYRPVPLKQQYIGITEK 523 (1674)
T ss_pred -hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCccccc--ccCcccCcCCccceEeccccC
Confidence 55555677777765543 3467899999999963 233322222221111 122233444456666555543
Q ss_pred hhHH---H-----HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc----------------------------------
Q 005313 404 DKHR---R-----LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR---------------------------------- 441 (703)
Q Consensus 404 ~k~~---~-----L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~---------------------------------- 441 (703)
.... . ...+++...+ +++|||+.++++....|+.|+.
T Consensus 524 ~~~~~~qamNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dL 602 (1674)
T KOG0951|consen 524 KPLKRFQAMNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDL 602 (1674)
T ss_pred CchHHHHHHHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhH
Confidence 3222 2 2344555554 7999999999998888887752
Q ss_pred ----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----ecC------CCCHHHHHHHHh
Q 005313 442 ----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YDF------PTGVEDYVHRIG 507 (703)
Q Consensus 442 ----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~----~d~------P~s~~~yiQriG 507 (703)
.++++++|++|+..+|+.+.+.|.+|.++|||+|..+++|||+|.-+++|- ||+ +.++.+.+||+|
T Consensus 603 kdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 603 KDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred HHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 047899999999999999999999999999999999999999998877773 444 347899999999
Q ss_pred ccCCCCC--ccEEEEEEecCChHH
Q 005313 508 RTGRAGA--TGVAYTFFGDQDSRY 529 (703)
Q Consensus 508 RagR~G~--~g~~i~~~~~~d~~~ 529 (703)
|+||..- .|..++..+..+..+
T Consensus 683 ragrp~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 683 RAGRPQYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred hcCCCccCcCCceeeccCchHhhh
Confidence 9999874 455565555444433
No 88
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=1.2e-27 Score=287.33 Aligned_cols=303 Identities=17% Similarity=0.230 Sum_probs=205.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEe
Q 005313 201 QAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280 (703)
Q Consensus 201 Q~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~ 280 (703)
..+.+..+.+++.+||+++||||||. .+|.+..... . ....++++.-|.|.-|..+...+.+.. +..+...
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~-~---~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~ 142 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG-R---GSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEK 142 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC-C---CCCceEecCCccHHHHHHHHHHHHHHh---CCCcceE
Confidence 34666777777788889999999997 4565544221 1 112367777898877776665554432 2222223
Q ss_pred eCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccc-ccccCCChHH-HHHHHHHcCCCceEEEEe
Q 005313 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD-RMLDMGFEPQ-IRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 281 ~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH-~ml~~gf~~~-i~~il~~l~~~~q~L~lS 358 (703)
+|.....+ ......+.|+|+|++.|++.+.... .+..+++||||||| ++++.+|.-. +..++.. .++.|+|+||
T Consensus 143 VGY~vR~~--~~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmS 218 (1283)
T TIGR01967 143 VGYKVRFH--DQVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITS 218 (1283)
T ss_pred EeeEEcCC--cccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEe
Confidence 33211111 1123347899999999999886543 48899999999999 6999887765 5555443 4578999999
Q ss_pred ccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEecc------chhHHHHHHHHHhc--CCCCeEEEEcCCHH
Q 005313 359 ATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP------MDKHRRLEQILRSQ--EPGSKIIVFCSTKK 430 (703)
Q Consensus 359 AT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~L~~ll~~~--~~~~kvLVF~~s~~ 430 (703)
||+.. ..+...+...++ +.+.... ..+..++..... .++...+...+... ...+.+||||++++
T Consensus 219 ATld~--~~fa~~F~~apv-I~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAPI-IEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred CCcCH--HHHHHHhcCCCE-EEECCCc-----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 99974 344444433333 3332111 112222222211 12223333333221 23468999999999
Q ss_pred HHHHHHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCC----------
Q 005313 431 MCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFP---------- 496 (703)
Q Consensus 431 ~a~~la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P---------- 496 (703)
+++.+++.|.+ .+.+..+||++++++|..+++.+ +..+|||||+++++|||||+|++||+++++
T Consensus 291 EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~ 368 (1283)
T TIGR01967 291 EIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTK 368 (1283)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccC
Confidence 99999999974 24578899999999999987654 246899999999999999999999998853
Q ss_pred --------CCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 497 --------TGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 497 --------~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
.|.+.|.||.||+||.+ +|.||.|+++.+.
T Consensus 369 ~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 369 VQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36689999999999997 8999999976543
No 89
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=5.3e-27 Score=283.01 Aligned_cols=309 Identities=19% Similarity=0.250 Sum_probs=197.1
Q ss_pred CCCcHHHHHHHHHHHc-----CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 195 SSPTPIQAQSWPIALQ-----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~-----grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
..+++||.+||..+.. .+.+|++++||||||++++..+...+.. . ...++|||+|+++|+.|+.+.|..+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~----~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-K----RFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-C----ccCeEEEEecHHHHHHHHHHHHHhc
Confidence 4689999999988763 3678999999999998755433333322 1 1348999999999999999999887
Q ss_pred cCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc-----cccccCcccEEEecccccccC---------
Q 005313 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-----RISLNQVSYLVLDEADRMLDM--------- 335 (703)
Q Consensus 270 ~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~-----~~~l~~~~~IViDEaH~ml~~--------- 335 (703)
..........+++....... .......|+|+|+++|...+... ...+..+++|||||||+....
T Consensus 487 ~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 487 KIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred ccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 43322111111111100000 11234789999999997765321 245678999999999996310
Q ss_pred C------ChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHh--------------hcC---ceecccc---------c
Q 005313 336 G------FEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL--------------LVN---PVQVNIG---------N 383 (703)
Q Consensus 336 g------f~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~--------------l~~---~~~i~i~---------~ 383 (703)
. +...+..++..+. ...|+|||||-.....++... +.+ |..+... .
T Consensus 565 ~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~ 642 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEK 642 (1123)
T ss_pred ccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccc
Confidence 1 2356777777653 357999999875544332211 110 1111100 0
Q ss_pred chhhhccccceEEE--EEecc--------chh-------HHH-HHHHHHhc--CCCCeEEEEcCCHHHHHHHHHHHhcCC
Q 005313 384 VDELAANKAITQHI--EVLAP--------MDK-------HRR-LEQILRSQ--EPGSKIIVFCSTKKMCDQLARNLTRQF 443 (703)
Q Consensus 384 ~~~~~~~~~i~~~~--~~~~~--------~~k-------~~~-L~~ll~~~--~~~~kvLVF~~s~~~a~~la~~L~~~~ 443 (703)
.++..........+ ....+ .++ ... +..+++.. ....|+||||.++++|+.+++.|.+.+
T Consensus 643 ~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f 722 (1123)
T PRK11448 643 GEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAF 722 (1123)
T ss_pred cchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 00000000000000 00000 000 001 11222221 123699999999999999988876422
Q ss_pred ----------ceeEecCCCCHHHHHHHHHHHhcCCC-cEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCC
Q 005313 444 ----------GAAAIHGDKSQSERDYVLNQFRAGRS-PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA 512 (703)
Q Consensus 444 ----------~~~~lhg~~~~~eR~~vl~~F~~G~~-~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~ 512 (703)
.+..+|++.+ +++.++++|+++.. +|||+++++.+|+|+|.|.+||+++.+.|...|+||+||+.|.
T Consensus 723 ~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 723 KKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred HhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 3556888875 56789999999887 5899999999999999999999999999999999999999997
Q ss_pred CC
Q 005313 513 GA 514 (703)
Q Consensus 513 G~ 514 (703)
..
T Consensus 801 ~~ 802 (1123)
T PRK11448 801 CP 802 (1123)
T ss_pred Cc
Confidence 54
No 90
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=4.8e-26 Score=270.02 Aligned_cols=327 Identities=17% Similarity=0.219 Sum_probs=217.9
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 196 SPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 196 ~p~piQ~~ai~~il----~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
+|++||.+.+.+++ .+.+.|++..+|.|||+..+. ++.++..... ...++|||||. .|+.||.+++.+|+.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~---~~gp~LIVvP~-SlL~nW~~Ei~kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYRG---ITGPHMVVAPK-STLGNWMNEIRRFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcC---CCCCEEEEeCh-HHHHHHHHHHHHHCC
Confidence 78999999999886 467899999999999987543 3344433211 12368999996 788999999999985
Q ss_pred CCCceEEEeeCCCCCCchhhh---hcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHc
Q 005313 272 SSRISCTCLYGGAPKGPQLKD---IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV 348 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~---l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l 348 (703)
. +.++.++|.......... ....++|||+|++.+..... .+....+++|||||||++-+. ...+.+++..+
T Consensus 244 ~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 244 V--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred C--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 4 556666665432222111 12348999999999866432 233346789999999998653 34455566666
Q ss_pred CCCceEEEEeccCcH-HHHHHHHH--hhc---------------------------------Cceecccccchh-hhccc
Q 005313 349 PARRQTLMYTATWPR-EVRKIAAD--LLV---------------------------------NPVQVNIGNVDE-LAANK 391 (703)
Q Consensus 349 ~~~~q~L~lSAT~p~-~v~~l~~~--~l~---------------------------------~~~~i~i~~~~~-~~~~~ 391 (703)
.... .|++|+|+-. .+.++... |+. .++.+.....+. .....
T Consensus 318 ~a~~-RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 318 STNY-RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred hcCc-EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 5443 5889999721 11111100 000 000000000000 00000
Q ss_pred cceEEE--------------------------------------------------------------EEeccchhHHHH
Q 005313 392 AITQHI--------------------------------------------------------------EVLAPMDKHRRL 409 (703)
Q Consensus 392 ~i~~~~--------------------------------------------------------------~~~~~~~k~~~L 409 (703)
.....+ ..+....|...|
T Consensus 397 K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 397 KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 000000 001112344445
Q ss_pred HHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcC---CCcEEEEcccccccCCC
Q 005313 410 EQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAG---RSPVLVATDVAARGLDI 484 (703)
Q Consensus 410 ~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G---~~~ILVaTdv~~~GIDI 484 (703)
..++... ..+.++||||.....++.|.++|. ..+.+..|||.++..+|..+++.|+.. ...+|++|.+.+.|||+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 5555443 356799999999999999999987 578999999999999999999999753 34579999999999999
Q ss_pred CCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 485 KDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 485 p~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
..+++||+||++||+....|++||+.|.|+...|.+|..-....+.++++
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIl 606 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVI 606 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHH
Confidence 99999999999999999999999999999988777766544444444444
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.8e-26 Score=260.17 Aligned_cols=290 Identities=20% Similarity=0.257 Sum_probs=192.5
Q ss_pred EEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCc---hhh
Q 005313 215 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLK 291 (703)
Q Consensus 215 lv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~---~~~ 291 (703)
|+.++||+|||++|+..+...+.. +.++|||+|+++|+.|+++.+++.+ +..+..++++....+ .|.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHH
Confidence 467999999999997765555443 4589999999999999999998764 345667777665433 344
Q ss_pred hhcC-CCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC-----Ch-HHHHHHHHHcCCCceEEEEeccCcHH
Q 005313 292 DIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-----FE-PQIRKIVKEVPARRQTLMYTATWPRE 364 (703)
Q Consensus 292 ~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g-----f~-~~i~~il~~l~~~~q~L~lSAT~p~~ 364 (703)
.+.. ..+|||+|+..|. ..+.++++|||||+|....+. |. ..+ .++.....+.++|++|||+..+
T Consensus 71 ~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~-a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDV-AVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHH-HHHHHHhcCCCEEEEeCCCCHH
Confidence 4444 4799999998763 357789999999999876432 11 112 2233334578899999998755
Q ss_pred HHHHHHHhhcCcee-cccccchhhhcccc-ceEEEEEeccc----hhHHHHHHHHHhcCCCCeEEEEcCCHHH-------
Q 005313 365 VRKIAADLLVNPVQ-VNIGNVDELAANKA-ITQHIEVLAPM----DKHRRLEQILRSQEPGSKIIVFCSTKKM------- 431 (703)
Q Consensus 365 v~~l~~~~l~~~~~-i~i~~~~~~~~~~~-i~~~~~~~~~~----~k~~~L~~ll~~~~~~~kvLVF~~s~~~------- 431 (703)
....+. ..... +.+.. ....... ....+...... -....+..+.+....++++|||+|++..
T Consensus 143 s~~~~~---~g~~~~~~l~~--r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~ 217 (505)
T TIGR00595 143 SYHNAK---QKAYRLLVLTR--RVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCR 217 (505)
T ss_pred HHHHHh---cCCeEEeechh--hhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhh
Confidence 443332 11111 11110 0000000 11111111111 0112333344455667889999665432
Q ss_pred -----------------------------------------------------HHHHHHHHhcC---CceeEecCCCCHH
Q 005313 432 -----------------------------------------------------CDQLARNLTRQ---FGAAAIHGDKSQS 455 (703)
Q Consensus 432 -----------------------------------------------------a~~la~~L~~~---~~~~~lhg~~~~~ 455 (703)
.+.+++.|.+. .++..+|++++..
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSR 297 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccC
Confidence 46667777654 4688999999876
Q ss_pred HH--HHHHHHHhcCCCcEEEEcccccccCCCCCccEEE--EecCCC----------CHHHHHHHHhccCCCCCccEEEEE
Q 005313 456 ER--DYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV--NYDFPT----------GVEDYVHRIGRTGRAGATGVAYTF 521 (703)
Q Consensus 456 eR--~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI--~~d~P~----------s~~~yiQriGRagR~G~~g~~i~~ 521 (703)
++ +.++++|++|+.+|||+|+++++|+|+|+|++|+ ++|... ....|+|++||+||.++.|.+++.
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 66 8999999999999999999999999999999886 445322 246789999999999999999876
Q ss_pred EecCCh
Q 005313 522 FGDQDS 527 (703)
Q Consensus 522 ~~~~d~ 527 (703)
....+.
T Consensus 378 t~~p~~ 383 (505)
T TIGR00595 378 TYNPNH 383 (505)
T ss_pred eCCCCC
Confidence 644443
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.7e-26 Score=258.98 Aligned_cols=308 Identities=20% Similarity=0.217 Sum_probs=225.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
+|-.+|++||-++..+..|+|.|+|.+|||+++..++...-.+ ..++++.+|-++|-+|.++.|+..+.+.+
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h-------~TR~iYTSPIKALSNQKfRDFk~tF~Dvg- 368 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH-------MTRTIYTSPIKALSNQKFRDFKETFGDVG- 368 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh-------ccceEecchhhhhccchHHHHHHhccccc-
Confidence 7889999999999999999999999999999988765544333 34899999999999999999887766655
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEE
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L 355 (703)
+++|+.... ..+.++|+|.+.|.++|-++.-.+.++.+|||||+|.+.|......|++++-.+|+..++|
T Consensus 369 ---LlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~I 438 (1248)
T KOG0947|consen 369 ---LLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFI 438 (1248)
T ss_pred ---eeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEE
Confidence 577776433 3378999999999999988777788999999999999998888889999999999999999
Q ss_pred EEeccCcHHHHHHHHHhh---cCceecccc---------------------cchhhhccccceEEEEEe-----------
Q 005313 356 MYTATWPREVRKIAADLL---VNPVQVNIG---------------------NVDELAANKAITQHIEVL----------- 400 (703)
Q Consensus 356 ~lSAT~p~~v~~l~~~~l---~~~~~i~i~---------------------~~~~~~~~~~i~~~~~~~----------- 400 (703)
++|||.|+.. +++.+.- ...+.+.-. +.........+.......
T Consensus 439 lLSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~ 517 (1248)
T KOG0947|consen 439 LLSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEK 517 (1248)
T ss_pred EEeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccc
Confidence 9999998654 3333221 111100000 000000000000000000
Q ss_pred ---------------------------ccchhH--HHHHHHHHhcC--CCCeEEEEcCCHHHHHHHHHHHhcC-------
Q 005313 401 ---------------------------APMDKH--RRLEQILRSQE--PGSKIIVFCSTKKMCDQLARNLTRQ------- 442 (703)
Q Consensus 401 ---------------------------~~~~k~--~~L~~ll~~~~--~~~kvLVF~~s~~~a~~la~~L~~~------- 442 (703)
...++. ..+.+++.... .--++||||-+++.|+..++.|..-
T Consensus 518 ~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~E 597 (1248)
T KOG0947|consen 518 SDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKE 597 (1248)
T ss_pred ccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchh
Confidence 000011 12333333221 2248999999999999999998531
Q ss_pred ---------------------------------CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccE
Q 005313 443 ---------------------------------FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV 489 (703)
Q Consensus 443 ---------------------------------~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~ 489 (703)
-+++++|+++-+--++-|...|..|-++||+||.++++|||.|.-.+
T Consensus 598 KseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtv 677 (1248)
T KOG0947|consen 598 KSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTV 677 (1248)
T ss_pred HHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeE
Confidence 16889999999999999999999999999999999999999998776
Q ss_pred EEEecCC---------CCHHHHHHHHhccCCCCC--ccEEEEEEe
Q 005313 490 VVNYDFP---------TGVEDYVHRIGRTGRAGA--TGVAYTFFG 523 (703)
Q Consensus 490 VI~~d~P---------~s~~~yiQriGRagR~G~--~g~~i~~~~ 523 (703)
|+. .+- -.+-+|.||.|||||.|- .|.++++..
T Consensus 678 VF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 678 VFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred Eee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 664 221 257899999999999995 465555543
No 93
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=3.5e-26 Score=258.70 Aligned_cols=340 Identities=21% Similarity=0.293 Sum_probs=242.8
Q ss_pred CCHHHHH-HHHHCCCCCCcHHHHHHH--HHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHH
Q 005313 181 FPPELLR-EVHNAGFSSPTPIQAQSW--PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE 257 (703)
Q Consensus 181 l~~~l~~-~l~~~g~~~p~piQ~~ai--~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Ptre 257 (703)
+++.+.+ ..+..|+..++.||.+|+ +.++.++|+|..+||+.|||+++-+.++..+.-.. ..++++.|...
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r------r~~llilp~vs 280 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR------RNVLLILPYVS 280 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh------hceeEecceee
Confidence 4444444 445568899999999998 78889999999999999999999888777665533 26899999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh--ccccccCcccEEEecccccccC
Q 005313 258 LATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM--RRISLNQVSYLVLDEADRMLDM 335 (703)
Q Consensus 258 La~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~--~~~~l~~~~~IViDEaH~ml~~ 335 (703)
.++.....+..+....++.+.+.+|..+.....+. ..|.|||.++-+.+++. ..-.++.+.+|||||.|.+.+.
T Consensus 281 iv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~----~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKR----ESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhHHHHhhhhhhccccCCcchhhcccCCCCCcccc----eeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 99998999999999999999988877665544333 58999999998765542 1234667899999999999998
Q ss_pred CChHHHHHHHHHc-----CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEe----------
Q 005313 336 GFEPQIRKIVKEV-----PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL---------- 400 (703)
Q Consensus 336 gf~~~i~~il~~l-----~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~---------- 400 (703)
+....++.++..+ ....|+|+||||+|+. .++..++...+...-..+-++.....+-..+...
T Consensus 357 ~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia 434 (1008)
T KOG0950|consen 357 GRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIA 434 (1008)
T ss_pred ccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhh
Confidence 8777777766542 3346799999999853 2223333221111100001111110010111101
Q ss_pred -------ccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHhc-------------------------------
Q 005313 401 -------APMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTR------------------------------- 441 (703)
Q Consensus 401 -------~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~~------------------------------- 441 (703)
...+. +.+..++.+. .++..+||||++++.|+.++..+..
T Consensus 435 ~l~~~~~g~~dp-D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~l 513 (1008)
T KOG0950|consen 435 NLYSSNLGDEDP-DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGIL 513 (1008)
T ss_pred hhhhhhcccCCC-cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCccc
Confidence 00010 1222233222 3345699999999999998866522
Q ss_pred --------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecC----CCCHHHHHHHHhcc
Q 005313 442 --------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF----PTGVEDYVHRIGRT 509 (703)
Q Consensus 442 --------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~----P~s~~~yiQriGRa 509 (703)
.++++++|.+++.++|+.+...|++|.+.|++||+.++.|+|+|..+++|-.-+ ..+..+|.||+|||
T Consensus 514 d~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRA 593 (1008)
T KOG0950|consen 514 DPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRA 593 (1008)
T ss_pred chHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhh
Confidence 036889999999999999999999999999999999999999999998886432 24778999999999
Q ss_pred CCCCC--ccEEEEEEecCChHHHHHH
Q 005313 510 GRAGA--TGVAYTFFGDQDSRYASDL 533 (703)
Q Consensus 510 gR~G~--~g~~i~~~~~~d~~~~~~l 533 (703)
||+|. .|.+++.+...+.+...++
T Consensus 594 GR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 594 GRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred hhcccccCcceEEEeeccchhHHHHH
Confidence 99984 5889999988876654433
No 94
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.1e-26 Score=254.73 Aligned_cols=312 Identities=21% Similarity=0.287 Sum_probs=237.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
++-|+|.++|..+-++..|||.|.|.+|||.++-.++...+.. +-+||+.+|-++|-+|.++++..-+++.++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-------kQRVIYTSPIKALSNQKYREl~~EF~DVGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-------KQRVIYTSPIKALSNQKYRELLEEFKDVGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-------cCeEEeeChhhhhcchhHHHHHHHhcccce
Confidence 7889999999999999999999999999999998887777665 348999999999999999998877666554
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEE
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L 355 (703)
.+|+..... .+.-+|+|.+.|..++-++.--+..+.+||+||+|.|-|....-.|++-+-.+|++.+.+
T Consensus 202 ----MTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 202 ----MTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred ----eecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 455554332 267899999999999988777788999999999999999887777787777899999999
Q ss_pred EEeccCcHHH--HHHHHHhhcCceecccccchhhhccccce-----EEEEEeccc-----hhHHHHHHHHHh--------
Q 005313 356 MYTATWPREV--RKIAADLLVNPVQVNIGNVDELAANKAIT-----QHIEVLAPM-----DKHRRLEQILRS-------- 415 (703)
Q Consensus 356 ~lSAT~p~~v--~~l~~~~l~~~~~i~i~~~~~~~~~~~i~-----~~~~~~~~~-----~k~~~L~~ll~~-------- 415 (703)
++|||+|+.. .+++..+...|.++...+....+..+.+. -.+.++++. +.+......|..
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~ 350 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKK 350 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccc
Confidence 9999999754 35666666777766543332211111100 011122221 111111222211
Q ss_pred ---------------------------c--CCCCeEEEEcCCHHHHHHHHHHHhcC------------------------
Q 005313 416 ---------------------------Q--EPGSKIIVFCSTKKMCDQLARNLTRQ------------------------ 442 (703)
Q Consensus 416 ---------------------------~--~~~~kvLVF~~s~~~a~~la~~L~~~------------------------ 442 (703)
. ....++|||+-++++|+.+|-.+.+-
T Consensus 351 ~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Lse 430 (1041)
T KOG0948|consen 351 KANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSE 430 (1041)
T ss_pred ccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcCh
Confidence 0 12248999999999999999887431
Q ss_pred ----------------CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----ec---CC-CC
Q 005313 443 ----------------FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YD---FP-TG 498 (703)
Q Consensus 443 ----------------~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~----~d---~P-~s 498 (703)
-++.++|+++-+--++-+.-.|.+|-+++|+||.+++.|||.|.-++|+- || +- .+
T Consensus 431 eDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwis 510 (1041)
T KOG0948|consen 431 EDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWIS 510 (1041)
T ss_pred hhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeec
Confidence 15788999999999999999999999999999999999999998776663 22 11 26
Q ss_pred HHHHHHHHhccCCCCC--ccEEEEEEecC
Q 005313 499 VEDYVHRIGRTGRAGA--TGVAYTFFGDQ 525 (703)
Q Consensus 499 ~~~yiQriGRagR~G~--~g~~i~~~~~~ 525 (703)
--+|+||.||+||.|. .|.|++++++.
T Consensus 511 sGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 511 SGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ccceEEecccccccCCCCCceEEEEecCc
Confidence 6799999999999995 58899888765
No 95
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.6e-25 Score=258.30 Aligned_cols=319 Identities=18% Similarity=0.231 Sum_probs=220.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.++++|.-.--.+. ..-|+.++||+|||++|++|++..... +..++||+||++||.|.++++..+...+++
T Consensus 82 ~~ydvQliGg~~Lh--~G~Iaem~TGeGKTL~a~Lpa~~~al~-------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 82 RHFDVQLIGGMVLH--EGNIAEMRTGEGKTLVATLPAYLNAIS-------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred CcchHHHhhhhhhc--cCccccccCCCCchHHHHHHHHHHHhc-------CCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 56677766554444 445889999999999999999977654 346999999999999999999999999999
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhc-cccc-----cCcccEEEecccccccCC------------
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR-RISL-----NQVSYLVLDEADRMLDMG------------ 336 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~-~~~l-----~~~~~IViDEaH~ml~~g------------ 336 (703)
.+.+++++.........+ .++|+|+||++| .+++..+ .+.+ ..+.++||||||.||=..
T Consensus 153 tv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~ 230 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAE 230 (896)
T ss_pred eEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCc
Confidence 999999987655443333 589999999999 9999866 3334 579999999999876211
Q ss_pred ----ChHHHHHHHHHcCC--------------CceEEEEeccCcHHHHH----------------------------HHH
Q 005313 337 ----FEPQIRKIVKEVPA--------------RRQTLMYTATWPREVRK----------------------------IAA 370 (703)
Q Consensus 337 ----f~~~i~~il~~l~~--------------~~q~L~lSAT~p~~v~~----------------------------l~~ 370 (703)
....+..++..+.. +.+.+.+|-.=-..+++ .++
T Consensus 231 ~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~ 310 (896)
T PRK13104 231 DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALK 310 (896)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHH
Confidence 11122222332221 11223222210000000 000
Q ss_pred --HhhcCce---------------------------------------ec----------cccc----------------
Q 005313 371 --DLLVNPV---------------------------------------QV----------NIGN---------------- 383 (703)
Q Consensus 371 --~~l~~~~---------------------------------------~i----------~i~~---------------- 383 (703)
.++.... .+ .+.+
T Consensus 311 A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~ 390 (896)
T PRK13104 311 AHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTAD 390 (896)
T ss_pred HHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCCh
Confidence 0000000 00 0000
Q ss_pred -------------chhhhccccc----eEEEEEeccchhHHHHHHHH-HhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCc
Q 005313 384 -------------VDELAANKAI----TQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLT-RQFG 444 (703)
Q Consensus 384 -------------~~~~~~~~~i----~~~~~~~~~~~k~~~L~~ll-~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~ 444 (703)
.-.++.+..+ .....+....+|...+.+.+ +.+..+.++||||+|++.++.+++.|. .+++
T Consensus 391 te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~ 470 (896)
T PRK13104 391 TEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIK 470 (896)
T ss_pred hHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 0000000000 01112334445666555544 445788999999999999999999998 5789
Q ss_pred eeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC---------------------------------c----
Q 005313 445 AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD---------------------------------I---- 487 (703)
Q Consensus 445 ~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~---------------------------------v---- 487 (703)
+.+||+.+.+.+++.+.++|+.|. |+|||++++||+||.= |
T Consensus 471 h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 548 (896)
T PRK13104 471 HQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAG 548 (896)
T ss_pred eEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcC
Confidence 999999999999999999999995 9999999999999961 1
Q ss_pred -cEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 488 -RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 488 -~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
=|||-...+.|...-.|..||+||.|.+|.+-.|++-.|.
T Consensus 549 GL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 549 GLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred CCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1688888889999999999999999999999999986654
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.6e-25 Score=253.72 Aligned_cols=316 Identities=19% Similarity=0.193 Sum_probs=227.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..|+++|.-..-.+.+|+ |+.++||+|||+++.+|++..... +..+-||+||.+||.|.++++..+...++
T Consensus 80 ~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-------CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 378888888876666654 888999999999999999644433 33577999999999999999999999999
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhcc------ccccCcccEEEecccccccCC-----------
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRMLDMG----------- 336 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~~------~~l~~~~~IViDEaH~ml~~g----------- 336 (703)
+.+.++.++.+...+...+ .++|+++|+..| .|++..+. ..+..+.++||||||.||=..
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999987665544443 489999999999 89987654 235678999999999876110
Q ss_pred -----ChHHHHHHHHHcCC--------Cc---------------------------------------------------
Q 005313 337 -----FEPQIRKIVKEVPA--------RR--------------------------------------------------- 352 (703)
Q Consensus 337 -----f~~~i~~il~~l~~--------~~--------------------------------------------------- 352 (703)
....+..++..+.. +.
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 11222223333211 01
Q ss_pred ----------------------------------------------------------eEEEEeccCcHHHHHHHHHhhc
Q 005313 353 ----------------------------------------------------------QTLMYTATWPREVRKIAADLLV 374 (703)
Q Consensus 353 ----------------------------------------------------------q~L~lSAT~p~~v~~l~~~~l~ 374 (703)
++.+||.|...+..++..-|-.
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 1223333332222222211111
Q ss_pred CceecccccchhhhccccceEEEEEeccchhHHHHHHHHHh-cCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCC
Q 005313 375 NPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDK 452 (703)
Q Consensus 375 ~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~-~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~ 452 (703)
+-+.+. . ......... .........+|...+...+.. ...+.++||||+|++.++.+++.|. ..+++..+|+.
T Consensus 389 ~vv~IP--t-nkp~~r~d~-~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak- 463 (830)
T PRK12904 389 DVVVIP--T-NRPMIRIDH-PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK- 463 (830)
T ss_pred CEEEcC--C-CCCeeeeeC-CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-
Confidence 111110 0 000000000 112234555677777777754 3567899999999999999999998 46899999995
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc--------------------------------------cEEEEec
Q 005313 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI--------------------------------------RVVVNYD 494 (703)
Q Consensus 453 ~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v--------------------------------------~~VI~~d 494 (703)
+.+|+..+.+|..+...|+|||++++||+||+=- =|||-..
T Consensus 464 -q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe 542 (830)
T PRK12904 464 -NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542 (830)
T ss_pred -hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc
Confidence 7899999999999999999999999999999632 1688888
Q ss_pred CCCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 495 FPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 495 ~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
.+.|...-.|..||+||.|.+|.+..|++-.|.
T Consensus 543 rhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred cCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 899999999999999999999999999986653
No 97
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=8.7e-25 Score=251.70 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=128.9
Q ss_pred cCCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCE
Q 005313 177 DATGFPPELLREVH-----NAGFSSP---TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPT 248 (703)
Q Consensus 177 ~~~~l~~~l~~~l~-----~~g~~~p---~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~ 248 (703)
+.+.+..++.+.+. .+||..| +|+|.++|+.++.++++|+.++||+|||++|++|++..+.. +..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-------g~~ 137 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-------GKP 137 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-------cCC
Confidence 34678888888877 5788888 99999999999999999999999999999999999987754 124
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhcccccc-------C
Q 005313 249 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRRISLN-------Q 320 (703)
Q Consensus 249 vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~~~~l~-------~ 320 (703)
++||+||++||.|..+++..+...+++.+.+++|+.....+...+ .++|+|+||++| ++++..+.+.++ .
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~ 215 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRG 215 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhccc
Confidence 899999999999999999999999999999999998877665554 499999999999 999987756555 4
Q ss_pred cccEEEecccccc
Q 005313 321 VSYLVLDEADRML 333 (703)
Q Consensus 321 ~~~IViDEaH~ml 333 (703)
+.++||||||.|+
T Consensus 216 ~~~~IIDEADsmL 228 (970)
T PRK12899 216 FYFAIIDEVDSIL 228 (970)
T ss_pred ccEEEEechhhhh
Confidence 5899999999887
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=5.6e-25 Score=256.40 Aligned_cols=313 Identities=20% Similarity=0.269 Sum_probs=229.6
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 191 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 191 ~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
..+| .|.++|++++-.+..+.+|+++||||+|||+++..++...+.. +.++++++|.++|.+|.+.++....
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-------~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-------GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-------CCceEeccchhhhhhhHHHHHHHHh
Confidence 3455 7899999999999999999999999999999988877666655 4479999999999999998877654
Q ss_pred CCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCC
Q 005313 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350 (703)
Q Consensus 271 ~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~ 350 (703)
.+..-.+.+++|+... ...+.++|+|.+.|.+++......+..+..||+||+|.|.|......+++++-.+|+
T Consensus 187 gdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~ 259 (1041)
T COG4581 187 GDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD 259 (1041)
T ss_pred hhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC
Confidence 4332223445565533 344789999999999999988888999999999999999999989999999999999
Q ss_pred CceEEEEeccCcHHH--HHHHHHhhcCceecccccchhhhccccceEEE-------EEeccchh----------------
Q 005313 351 RRQTLMYTATWPREV--RKIAADLLVNPVQVNIGNVDELAANKAITQHI-------EVLAPMDK---------------- 405 (703)
Q Consensus 351 ~~q~L~lSAT~p~~v--~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~-------~~~~~~~k---------------- 405 (703)
..++++||||.|+.. ..++...-..++.+...+.... .+.+++ ..+.+..+
T Consensus 260 ~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rpv----PL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~ 335 (1041)
T COG4581 260 HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPV----PLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCF 335 (1041)
T ss_pred CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCC----CeEEEEecCCceeeeecccccchhhcchhhhhhhhcc
Confidence 999999999997543 3333333333333322111110 011111 11111110
Q ss_pred -------------------------------HHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc----------C--
Q 005313 406 -------------------------------HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR----------Q-- 442 (703)
Q Consensus 406 -------------------------------~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~----------~-- 442 (703)
...+...+.. ...-++|+||-+++.|+.++..+.. .
T Consensus 336 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i 414 (1041)
T COG4581 336 SEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAI 414 (1041)
T ss_pred chhccccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHH
Confidence 0001111111 1234899999999999998887741 0
Q ss_pred -----------------C-------------ceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE
Q 005313 443 -----------------F-------------GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN 492 (703)
Q Consensus 443 -----------------~-------------~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~ 492 (703)
+ +++++|++|-+..|..+...|..|-++||++|.+++.|||.|.-++|+-
T Consensus 415 ~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~ 494 (1041)
T COG4581 415 REIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFT 494 (1041)
T ss_pred HHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeee
Confidence 1 3568999999999999999999999999999999999999998776652
Q ss_pred ----ec----CCCCHHHHHHHHhccCCCCCc--cEEEEEEe
Q 005313 493 ----YD----FPTGVEDYVHRIGRTGRAGAT--GVAYTFFG 523 (703)
Q Consensus 493 ----~d----~P~s~~~yiQriGRagR~G~~--g~~i~~~~ 523 (703)
+| -.-++.+|.|+.||+||.|.+ |.+++...
T Consensus 495 ~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 495 SLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred eeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 22 124789999999999999964 66766643
No 99
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=8.6e-25 Score=251.25 Aligned_cols=312 Identities=20% Similarity=0.245 Sum_probs=220.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..|+++|.-..-.+.+|+ |+.+.||+|||+++.+|++..... |..|-|++|+.-||.|-++++..+...++
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-------G~~v~vvT~neyLA~Rd~e~~~~~~~~LG 149 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-------GKGVHVVTVNEYLSSRDATEMGELYRWLG 149 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-------CCCeEEEeccHHHHHhhHHHHHHHHHhcC
Confidence 478899988877776665 889999999999999988877766 56899999999999999999999999999
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhcc------ccccCcccEEEecccccccCC-----------
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRMLDMG----------- 336 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~~------~~l~~~~~IViDEaH~ml~~g----------- 336 (703)
+.+.++.+...... +...-.|||+++|...| .|+|..+. .....+.+.||||+|.+|=..
T Consensus 150 l~vg~i~~~~~~~~--r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~ 227 (796)
T PRK12906 150 LTVGLNLNSMSPDE--KRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQA 227 (796)
T ss_pred CeEEEeCCCCCHHH--HHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCC
Confidence 99999987654433 23333589999999776 34554321 123467899999999765110
Q ss_pred -----ChHHHHHHHHHcCC-------------------Cce---------------------------------------
Q 005313 337 -----FEPQIRKIVKEVPA-------------------RRQ--------------------------------------- 353 (703)
Q Consensus 337 -----f~~~i~~il~~l~~-------------------~~q--------------------------------------- 353 (703)
+...+..++..+.. ..+
T Consensus 228 ~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 307 (796)
T PRK12906 228 EKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRA 307 (796)
T ss_pred CcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHH
Confidence 11122222222111 011
Q ss_pred ----------------------------------------------------------------------EEEEeccCcH
Q 005313 354 ----------------------------------------------------------------------TLMYTATWPR 363 (703)
Q Consensus 354 ----------------------------------------------------------------------~L~lSAT~p~ 363 (703)
+.+||.|...
T Consensus 308 ~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~ 387 (796)
T PRK12906 308 NYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKT 387 (796)
T ss_pred HHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 1122222211
Q ss_pred HHHHHHHHhhcCceecccccchhhhccccce----EEEEEeccchhHHHHHHHHH-hcCCCCeEEEEcCCHHHHHHHHHH
Q 005313 364 EVRKIAADLLVNPVQVNIGNVDELAANKAIT----QHIEVLAPMDKHRRLEQILR-SQEPGSKIIVFCSTKKMCDQLARN 438 (703)
Q Consensus 364 ~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~----~~~~~~~~~~k~~~L~~ll~-~~~~~~kvLVF~~s~~~a~~la~~ 438 (703)
+..++..-|-.+- +.+ +.+..+. ....+.....|...|...+. ....+.++||||++++.++.++..
T Consensus 388 e~~Ef~~iY~l~v--v~I------Ptnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 388 EEEEFREIYNMEV--ITI------PTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred HHHHHHHHhCCCE--EEc------CCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 1111111010000 000 0111000 01122344557766766664 346778999999999999999999
Q ss_pred Hh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC---Ccc-----EEEEecCCCCHHHHHHHHhcc
Q 005313 439 LT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK---DIR-----VVVNYDFPTGVEDYVHRIGRT 509 (703)
Q Consensus 439 L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp---~v~-----~VI~~d~P~s~~~yiQriGRa 509 (703)
|. ..+++.++|+++.+.++..+.++++.|. |+|||++++||+||+ +|. |||++++|.+...|.|++||+
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 98 5789999999999888888888888777 999999999999995 899 999999999999999999999
Q ss_pred CCCCCccEEEEEEecCCh
Q 005313 510 GRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 510 gR~G~~g~~i~~~~~~d~ 527 (703)
||.|.+|.+..|++..|.
T Consensus 538 GRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 538 GRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred ccCCCCcceEEEEeccch
Confidence 999999999999987754
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=8.4e-24 Score=215.45 Aligned_cols=297 Identities=20% Similarity=0.280 Sum_probs=206.8
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 196 SPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 196 ~p~piQ~~ai~~il----~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
++++.|+.+-..++ +.++.|+.|-||+|||... ...++.... .|.++.|.+|+...|.+++..++..+.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~------~G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN------QGGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh------cCCeEEEecCcccchHHHHHHHHHhhc
Confidence 78999998876655 5689999999999999753 334444333 266999999999999999988887654
Q ss_pred CCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHH-HHHHHcCC
Q 005313 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIR-KIVKEVPA 350 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~-~il~~l~~ 350 (703)
++.+.+++|+....-. ..++|+|...|+.+-. .+++|||||+|.+.-.. .+.+. .+-+....
T Consensus 170 --~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~ 232 (441)
T COG4098 170 --NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAVKKARKK 232 (441)
T ss_pred --cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHHHHhhcc
Confidence 3667788888754322 5899999988877543 47889999999764322 22333 33344555
Q ss_pred CceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhH-------HHHHHHHH-hcCCCCeE
Q 005313 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKH-------RRLEQILR-SQEPGSKI 422 (703)
Q Consensus 351 ~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~-------~~L~~ll~-~~~~~~kv 422 (703)
.--+|.+|||+++.++.-+..--...+ .+. ...-........+.++....|. ..|...|+ ....+.++
T Consensus 233 ~g~~IylTATp~k~l~r~~~~g~~~~~--klp--~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~ 308 (441)
T COG4098 233 EGATIYLTATPTKKLERKILKGNLRIL--KLP--ARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPV 308 (441)
T ss_pred cCceEEEecCChHHHHHHhhhCCeeEe--ecc--hhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcE
Confidence 667899999999877655433222111 111 1111111222223333333221 13444444 44667899
Q ss_pred EEEcCCHHHHHHHHHHHhcCCc---eeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEec-C-CC
Q 005313 423 IVFCSTKKMCDQLARNLTRQFG---AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYD-F-PT 497 (703)
Q Consensus 423 LVF~~s~~~a~~la~~L~~~~~---~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d-~-P~ 497 (703)
|||+++++..+.++..|++.++ ++.+|+. ...|.+..++|++|++.|||+|.+++||+.+|+|+++|.-. . -.
T Consensus 309 liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 309 LIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred EEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccc
Confidence 9999999999999999976554 4667765 45788999999999999999999999999999999866533 2 25
Q ss_pred CHHHHHHHHhccCCCCC--ccEEEEEE
Q 005313 498 GVEDYVHRIGRTGRAGA--TGVAYTFF 522 (703)
Q Consensus 498 s~~~yiQriGRagR~G~--~g~~i~~~ 522 (703)
+-+..+|..||+||.-. .|.++.|.
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred cHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 78899999999999643 46555444
No 101
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=1.5e-24 Score=210.13 Aligned_cols=165 Identities=31% Similarity=0.524 Sum_probs=141.4
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceE
Q 005313 198 TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISC 277 (703)
Q Consensus 198 ~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v 277 (703)
||+|.++|+.+++++++++.+|||+|||++++++++..+... . ..++||++|+++|++|+.+.+.+++....+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~----~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-K----DARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S----SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-C----CceEEEEeeccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888763 1 13899999999999999999999998888889
Q ss_pred EEeeCCCCCC-chhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCC--CceE
Q 005313 278 TCLYGGAPKG-PQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA--RRQT 354 (703)
Q Consensus 278 ~~~~gg~~~~-~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~--~~q~ 354 (703)
..++++.... .....+...++|+|+||++|.+++......+.++++|||||+|++.++.+...+..++..+.. +.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred ccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 9998887644 333344557999999999999999876667778999999999999988888888888888733 5899
Q ss_pred EEEeccCcHHHHH
Q 005313 355 LMYTATWPREVRK 367 (703)
Q Consensus 355 L~lSAT~p~~v~~ 367 (703)
|++|||+++.+++
T Consensus 156 i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 156 ILLSATLPSNVEK 168 (169)
T ss_dssp EEEESSSTHHHHH
T ss_pred EEEeeCCChhHhh
Confidence 9999999966654
No 102
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=2.4e-23 Score=229.89 Aligned_cols=329 Identities=19% Similarity=0.275 Sum_probs=229.5
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 196 SPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 196 ~p~piQ~~ai~~il----~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
.+++||.+.++++. ++-+.|+..++|.|||+.. |..+.++......+ .+.|||||...| .+|.+++++|+.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~---GPfLVi~P~StL-~NW~~Ef~rf~P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIP---GPFLVIAPKSTL-DNWMNEFKRFTP 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCC---CCeEEEeeHhhH-HHHHHHHHHhCC
Confidence 78999999998876 4568999999999999864 34555665544433 267999997665 678999999986
Q ss_pred CCCceEEEeeCCCCCCchhhh---hcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHc
Q 005313 272 SSRISCTCLYGGAPKGPQLKD---IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV 348 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~---l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l 348 (703)
. +.+++++|+......+.. .....+|+|+|++..+..- ..+.--.+.||||||||++-+. ...+.+++..+
T Consensus 242 ~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 242 S--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred C--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 4 778888888754333221 1235899999999986642 2333346789999999998765 34555667766
Q ss_pred CCCceEEEEeccCcH-HHHHHHHH----------------------------------------hh------------c-
Q 005313 349 PARRQTLMYTATWPR-EVRKIAAD----------------------------------------LL------------V- 374 (703)
Q Consensus 349 ~~~~q~L~lSAT~p~-~v~~l~~~----------------------------------------~l------------~- 374 (703)
.... .|++|.|+-. ++-++... |+ .
T Consensus 316 ~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred cccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 5554 4677777511 11111000 00 0
Q ss_pred -Cceecccc---------------cchhh------------------h---ccc----------cceEEEEEeccchhHH
Q 005313 375 -NPVQVNIG---------------NVDEL------------------A---ANK----------AITQHIEVLAPMDKHR 407 (703)
Q Consensus 375 -~~~~i~i~---------------~~~~~------------------~---~~~----------~i~~~~~~~~~~~k~~ 407 (703)
..+.+.++ +.+.+ . .+. ..+.....+....|..
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~ 474 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKML 474 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCccee
Confidence 00000000 00000 0 000 0000001122334666
Q ss_pred HHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCC---CcEEEEcccccccC
Q 005313 408 RLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGR---SPVLVATDVAARGL 482 (703)
Q Consensus 408 ~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~---~~ILVaTdv~~~GI 482 (703)
.|..+|... ..+++||||.....+.+.|.+++. +.|..+.|.|.++-++|...++.|..-. .-+|++|.+.+-||
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 677777654 578899999999999999999886 7899999999999999999999998654 34789999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHH
Q 005313 483 DIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKL 536 (703)
Q Consensus 483 DIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~ 536 (703)
|+..+++||.||..|++..-+|..-|++|.|++..+.+|-...+..+...+++-
T Consensus 555 NL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveR 608 (971)
T KOG0385|consen 555 NLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVER 608 (971)
T ss_pred ccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHH
Confidence 999999999999999999999999999999999888887776666666655543
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=5.7e-23 Score=236.60 Aligned_cols=315 Identities=20% Similarity=0.241 Sum_probs=217.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.++++|.-.--.+ .+.-|+.++||.|||++|.+|++..... +..|.||+|+.+||.|..+++..+...+++
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~-------g~~VhIvT~ndyLA~RD~e~m~~l~~~lGl 152 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT-------GKGVHVITVNDYLARRDAENNRPLFEFLGL 152 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc-------CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 5677776554444 3456888999999999999999877654 446999999999999999999999999999
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhc-cccc-----cCcccEEEecccccccCC------------
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR-RISL-----NQVSYLVLDEADRMLDMG------------ 336 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~-~~~l-----~~~~~IViDEaH~ml~~g------------ 336 (703)
.+.++.++..... +...-.+||+++|+..| +++|..+ .+.. ..+.++||||+|.|+-..
T Consensus 153 sv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~ 230 (908)
T PRK13107 153 TVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAE 230 (908)
T ss_pred eEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCc
Confidence 9999988765422 22223689999999999 8988765 3333 678999999999876321
Q ss_pred ----ChHHHHHHHHHcC-------------------CCceEEEEec----------------------------------
Q 005313 337 ----FEPQIRKIVKEVP-------------------ARRQTLMYTA---------------------------------- 359 (703)
Q Consensus 337 ----f~~~i~~il~~l~-------------------~~~q~L~lSA---------------------------------- 359 (703)
+...+..++..+. ...+.+.+|-
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i 310 (908)
T PRK13107 231 DSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHV 310 (908)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHH
Confidence 1111111222111 1111222221
Q ss_pred --------------------------------------------------------------------------------
Q 005313 360 -------------------------------------------------------------------------------- 359 (703)
Q Consensus 360 -------------------------------------------------------------------------------- 359 (703)
T Consensus 311 ~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GM 390 (908)
T PRK13107 311 NAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGM 390 (908)
T ss_pred HHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcc
Confidence
Q ss_pred --cCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHH-HhcCCCCeEEEEcCCHHHHHHHH
Q 005313 360 --TWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLA 436 (703)
Q Consensus 360 --T~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll-~~~~~~~kvLVF~~s~~~a~~la 436 (703)
|...+..++..-|-.+-+. +.. ........... .......+|...+.+-+ +.+..+.++||||.+++.++.++
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~--IPT-nkp~~R~d~~d-~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 391 TGTADTEAFEFQHIYGLDTVV--VPT-NRPMVRKDMAD-LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred cCCChHHHHHHHHHhCCCEEE--CCC-CCCccceeCCC-cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 1111000000000000000 000 00000000011 11233345555554444 44577899999999999999999
Q ss_pred HHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC-----------------------------
Q 005313 437 RNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD----------------------------- 486 (703)
Q Consensus 437 ~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~----------------------------- 486 (703)
..|. ..+++.++|++..+.+++.+.++|+.|. |+|||++++||+||.=
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 9998 4789999999999999999999999998 9999999999999961
Q ss_pred ---c-----cEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 487 ---I-----RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 487 ---v-----~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
| =|||-...+.|...-.|..||+||.|.+|.+..|++-.|.
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 1688888889999999999999999999999999986664
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=8.9e-22 Score=231.85 Aligned_cols=326 Identities=18% Similarity=0.218 Sum_probs=214.0
Q ss_pred CCcHHHHHHHHHHHcC---C-CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 196 SPTPIQAQSWPIALQS---R-DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 196 ~p~piQ~~ai~~il~g---r-dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
..+++|..++..++.. . .+++.||||.|||++.+++++..+... .....+++++.|++.+++++++.++++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~---~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK---IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 3489999999988865 3 678889999999999999888877662 11346999999999999999999998766
Q ss_pred CCCceEEEeeCCCCCCchhhh---------h----c-CCCcEEEECHHHHHHH-HHhcccc---ccCcccEEEecccccc
Q 005313 272 SSRISCTCLYGGAPKGPQLKD---------I----D-RGVDIVVATPGRLNDI-LEMRRIS---LNQVSYLVLDEADRML 333 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~---------l----~-~g~dIlV~Tp~~L~~~-l~~~~~~---l~~~~~IViDEaH~ml 333 (703)
...+.....++.......... + . .-+.++++|+..+... ....... .--.+++||||+|.+.
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 544332212222211100000 0 0 0134455555444331 1111111 1134689999999876
Q ss_pred cCCChHHHHHHHHHc-CCCceEEEEeccCcHHHHHHHHHhhcCceecccccch-hhhccccceEEE-EEeccchhHHHHH
Q 005313 334 DMGFEPQIRKIVKEV-PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD-ELAANKAITQHI-EVLAPMDKHRRLE 410 (703)
Q Consensus 334 ~~gf~~~i~~il~~l-~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~-~~~~~~~i~~~~-~~~~~~~k~~~L~ 410 (703)
+......+..++..+ .....+|+||||+|...++.+...+.....+...... .......+.+.. ..+..........
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 431 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIE 431 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhh
Confidence 653333344444433 3356799999999999999888887665444332110 000000111110 0000000012334
Q ss_pred HHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcCCc-eeEecCCCCHHHHHHHHHHHh----cCCCcEEEEcccccccCCCC
Q 005313 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFG-AAAIHGDKSQSERDYVLNQFR----AGRSPVLVATDVAARGLDIK 485 (703)
Q Consensus 411 ~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~~~-~~~lhg~~~~~eR~~vl~~F~----~G~~~ILVaTdv~~~GIDIp 485 (703)
........+.+++|.|||+..|..+++.|+.... +..+|+.+...+|.+.++.++ .....|+|||.+++.||||
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi- 510 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI- 510 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-
Confidence 4445567788999999999999999999997666 999999999999998888654 5678899999999999999
Q ss_pred CccEEEEecCCCCHHHHHHHHhccCCCC--CccEEEEEEecCCh
Q 005313 486 DIRVVVNYDFPTGVEDYVHRIGRTGRAG--ATGVAYTFFGDQDS 527 (703)
Q Consensus 486 ~v~~VI~~d~P~s~~~yiQriGRagR~G--~~g~~i~~~~~~d~ 527 (703)
+.+++|-== ..+...+||+||++|-| ..+.++++......
T Consensus 511 dfd~mITe~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 511 DFDVLITEL--APIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred ccCeeeecC--CCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 466665422 45899999999999999 56777777654433
No 105
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.88 E-value=1e-21 Score=220.88 Aligned_cols=296 Identities=19% Similarity=0.226 Sum_probs=190.7
Q ss_pred CCCcHHHHHHHHHHHc----C-CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 195 SSPTPIQAQSWPIALQ----S-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~----g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
..+++||..||..+.+ + +.+|+++.||+|||.+++. ++..|.++.. .++||||+.++.|+.|.+..+..+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~~----~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSGW----VKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcch----hheeeEEechHHHHHHHHHHHHHh
Confidence 4789999999977653 3 4689999999999998665 4444444322 248999999999999999999888
Q ss_pred cCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc-----cccccCcccEEEecccccccCCChHHHHHH
Q 005313 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-----RISLNQVSYLVLDEADRMLDMGFEPQIRKI 344 (703)
Q Consensus 270 ~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~-----~~~l~~~~~IViDEaH~ml~~gf~~~i~~i 344 (703)
..... .+..+.+.. ....++|.|+|++++...++.. .+....+++|||||||+- ....++.|
T Consensus 239 ~P~~~-~~n~i~~~~--------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I 305 (875)
T COG4096 239 LPFGT-KMNKIEDKK--------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSI 305 (875)
T ss_pred CCCcc-ceeeeeccc--------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHH
Confidence 65432 122222111 1114799999999999887644 455667999999999985 34555677
Q ss_pred HHHcCCCceEEEEeccCcHHHHHHHHHhh-cCcee------------------cccc--c------chhh-----hcccc
Q 005313 345 VKEVPARRQTLMYTATWPREVRKIAADLL-VNPVQ------------------VNIG--N------VDEL-----AANKA 392 (703)
Q Consensus 345 l~~l~~~~q~L~lSAT~p~~v~~l~~~~l-~~~~~------------------i~i~--~------~~~~-----~~~~~ 392 (703)
+.++..-.+ ++|||+...+..--..++ ..|+. +.+. . .+.. ...+.
T Consensus 306 ~dYFdA~~~--gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~ 383 (875)
T COG4096 306 LDYFDAATQ--GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEA 383 (875)
T ss_pred HHHHHHHHH--hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccc
Confidence 777665553 449998654333222232 12111 1110 0 0000 00000
Q ss_pred c--eEEEEEeccch-------hH----HHHHHHHHhc---CCCCeEEEEcCCHHHHHHHHHHHhcCCc------eeEecC
Q 005313 393 I--TQHIEVLAPMD-------KH----RRLEQILRSQ---EPGSKIIVFCSTKKMCDQLARNLTRQFG------AAAIHG 450 (703)
Q Consensus 393 i--~~~~~~~~~~~-------k~----~~L~~ll~~~---~~~~kvLVF~~s~~~a~~la~~L~~~~~------~~~lhg 450 (703)
+ ........+.+ .. ..+.+.|+.. ..-.|+||||.+..+|+.+...|.+.++ +..+.+
T Consensus 384 i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~ 463 (875)
T COG4096 384 IDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITG 463 (875)
T ss_pred cCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEec
Confidence 1 00000000000 11 1233333331 1135999999999999999999986443 556777
Q ss_pred CCCHHHHHHHHHHHhc-C-CCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCC
Q 005313 451 DKSQSERDYVLNQFRA-G-RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA 512 (703)
Q Consensus 451 ~~~~~eR~~vl~~F~~-G-~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~ 512 (703)
+-.+.+ ..++.|.. . --+|.|+.+++..|||+|.|..+|++..-.|...|.||+||+-|.
T Consensus 464 d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 464 DAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 654433 33455543 3 345888889999999999999999999999999999999999996
No 106
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.88 E-value=9.6e-21 Score=220.93 Aligned_cols=298 Identities=17% Similarity=0.165 Sum_probs=179.7
Q ss_pred CCcHHHHHHHHHHHc----------CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005313 196 SPTPIQAQSWPIALQ----------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDE 265 (703)
Q Consensus 196 ~p~piQ~~ai~~il~----------grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~ 265 (703)
-++++|.+|+..++. .+..|++++||||||++++..+...+.. ...+++|||+|+.+|..|+.+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 478899999987642 2468999999999999877655444422 1246999999999999999999
Q ss_pred HHHhcCCCCceEEEeeCCCCCCchhh-hhcC-CCcEEEECHHHHHHHHHhc--cccccCc-ccEEEecccccccCCChHH
Q 005313 266 AVKFGKSSRISCTCLYGGAPKGPQLK-DIDR-GVDIVVATPGRLNDILEMR--RISLNQV-SYLVLDEADRMLDMGFEPQ 340 (703)
Q Consensus 266 ~~k~~~~~~i~v~~~~gg~~~~~~~~-~l~~-g~dIlV~Tp~~L~~~l~~~--~~~l~~~-~~IViDEaH~ml~~gf~~~ 340 (703)
|.++..... .. ......+. .+.. ...|+|+|.++|...+... ....... .+||+||||+... ..
T Consensus 313 f~~~~~~~~------~~-~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~~ 381 (667)
T TIGR00348 313 FQSLQKDCA------ER-IESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----GE 381 (667)
T ss_pred HHhhCCCCC------cc-cCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----hH
Confidence 999864211 00 11112222 2222 3689999999998644321 1111112 2799999999742 23
Q ss_pred HHHHH-HHcCCCceEEEEeccCcHHHHHHHHHhhc----CceecccccchhhhccccceEEEEEe---------------
Q 005313 341 IRKIV-KEVPARRQTLMYTATWPREVRKIAADLLV----NPVQVNIGNVDELAANKAITQHIEVL--------------- 400 (703)
Q Consensus 341 i~~il-~~l~~~~q~L~lSAT~p~~v~~l~~~~l~----~~~~i~i~~~~~~~~~~~i~~~~~~~--------------- 400 (703)
+...+ ..++ +..+|+|||||-..........+. +++ ....-.+.+.....+...+...
T Consensus 382 ~~~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i-~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~ 459 (667)
T TIGR00348 382 LAKNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYL-HRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFF 459 (667)
T ss_pred HHHHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeE-EEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHH
Confidence 44444 3444 567999999985321110001111 111 1110001111100000000000
Q ss_pred -----------ccchh-------------------H-HHHHHHHHhc-----CCCCeEEEEcCCHHHHHHHHHHHhcC--
Q 005313 401 -----------APMDK-------------------H-RRLEQILRSQ-----EPGSKIIVFCSTKKMCDQLARNLTRQ-- 442 (703)
Q Consensus 401 -----------~~~~k-------------------~-~~L~~ll~~~-----~~~~kvLVF~~s~~~a~~la~~L~~~-- 442 (703)
.+..+ . .....+++.. ....+++|||.++.+|..+.+.|.+.
T Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~ 539 (667)
T TIGR00348 460 DEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELN 539 (667)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcc
Confidence 00000 0 0011112111 12479999999999999999888643
Q ss_pred ----CceeEecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEcccccccCCCCCccEEEEecCC
Q 005313 443 ----FGAAAIHGDKSQS---------------------ERDYVLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYDFP 496 (703)
Q Consensus 443 ----~~~~~lhg~~~~~---------------------eR~~vl~~F~~-G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P 496 (703)
...+++++....+ ..+.++++|++ +.++|||+++.+..|+|.|.+++++...+.
T Consensus 540 ~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKpl 619 (667)
T TIGR00348 540 EKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPL 619 (667)
T ss_pred cccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccc
Confidence 2344555543322 23478889976 688999999999999999999999988776
Q ss_pred CCHHHHHHHHhccCCC
Q 005313 497 TGVEDYVHRIGRTGRA 512 (703)
Q Consensus 497 ~s~~~yiQriGRagR~ 512 (703)
.+. .++|++||+.|.
T Consensus 620 k~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 620 KYH-GLLQAIARTNRI 634 (667)
T ss_pred ccc-HHHHHHHHhccc
Confidence 664 589999999994
No 107
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=1.8e-20 Score=224.96 Aligned_cols=350 Identities=18% Similarity=0.212 Sum_probs=213.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcH
Q 005313 181 FPPELLREVHNAGFSSPTPIQAQSWP----IALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 256 (703)
Q Consensus 181 l~~~l~~~l~~~g~~~p~piQ~~ai~----~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Ptr 256 (703)
+.+.+.+.+...||. +++.|.+++. .+.+++++++.||||+|||++|++|++.+... +.++||.+||+
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~-------~~~vvi~t~t~ 302 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT-------EKPVVISTNTK 302 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC-------CCeEEEEeCcH
Confidence 334667777777885 8999998766 55567899999999999999999999887651 24899999999
Q ss_pred HHHHHHHH-HHHHhcCCCC--ceEEEeeCCCCCC----------------------------------------------
Q 005313 257 ELATQIQD-EAVKFGKSSR--ISCTCLYGGAPKG---------------------------------------------- 287 (703)
Q Consensus 257 eLa~Q~~~-~~~k~~~~~~--i~v~~~~gg~~~~---------------------------------------------- 287 (703)
+|.+|+.. ++..+.+..+ ++++++.|....-
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 4554443322 5555555433210
Q ss_pred -chh------------------------hhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC------
Q 005313 288 -PQL------------------------KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG------ 336 (703)
Q Consensus 288 -~~~------------------------~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g------ 336 (703)
..| ++....++|||+++..|++.+......+....+|||||||++.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcc
Confidence 000 0112347899999999988765433335667899999999875310
Q ss_pred -C-----hHH----------------------------------------------------------------HHHHHH
Q 005313 337 -F-----EPQ----------------------------------------------------------------IRKIVK 346 (703)
Q Consensus 337 -f-----~~~----------------------------------------------------------------i~~il~ 346 (703)
+ ... +...+.
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 0 000 000000
Q ss_pred H-----------c-------------------------------------CCCceEEEEeccCcHH-HHHHHHHhhcCc-
Q 005313 347 E-----------V-------------------------------------PARRQTLMYTATWPRE-VRKIAADLLVNP- 376 (703)
Q Consensus 347 ~-----------l-------------------------------------~~~~q~L~lSAT~p~~-v~~l~~~~l~~~- 376 (703)
. + +....+|++|||+... -.+.+.+.+.-.
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0 1123578899998532 133444333321
Q ss_pred -eeccc-ccchhhhccccc--eEEEEEe---ccchhHHHHHHHHHhc--CCCCeEEEEcCCHHHHHHHHHHHhcC---Cc
Q 005313 377 -VQVNI-GNVDELAANKAI--TQHIEVL---APMDKHRRLEQILRSQ--EPGSKIIVFCSTKKMCDQLARNLTRQ---FG 444 (703)
Q Consensus 377 -~~i~i-~~~~~~~~~~~i--~~~~~~~---~~~~k~~~L~~ll~~~--~~~~kvLVF~~s~~~a~~la~~L~~~---~~ 444 (703)
....+ ........+..+ ...+... ....-.+.+...+... ...+++||||++.+.++.++..|... ..
T Consensus 623 ~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~ 702 (850)
T TIGR01407 623 VHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEG 702 (850)
T ss_pred cccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccC
Confidence 11111 111111111000 0000000 0111122222222221 23368999999999999999998641 12
Q ss_pred eeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCcc--EEEEecCCCC------------------------
Q 005313 445 AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR--VVVNYDFPTG------------------------ 498 (703)
Q Consensus 445 ~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~--~VI~~d~P~s------------------------ 498 (703)
..++..+.. ..|..+++.|++++..||++|+.+++|||+|+.. .||...+|..
T Consensus 703 ~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~ 781 (850)
T TIGR01407 703 YEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYD 781 (850)
T ss_pred ceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHH
Confidence 223333333 5789999999999999999999999999999755 5777777642
Q ss_pred ------HHHHHHHHhccCCCCCccEEEEEEecC--ChHHHHHHHHHHHh
Q 005313 499 ------VEDYVHRIGRTGRAGATGVAYTFFGDQ--DSRYASDLIKLLEG 539 (703)
Q Consensus 499 ------~~~yiQriGRagR~G~~g~~i~~~~~~--d~~~~~~l~~~l~~ 539 (703)
...+.|.+||.-|..++.-++++++.. ...+-+.+++.|..
T Consensus 782 ~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 782 YVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPE 830 (850)
T ss_pred hhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCC
Confidence 123569999999998776666677654 45566777777654
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.6e-20 Score=218.28 Aligned_cols=307 Identities=20% Similarity=0.281 Sum_probs=207.9
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hcCCCCce
Q 005313 198 TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK-FGKSSRIS 276 (703)
Q Consensus 198 ~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k-~~~~~~i~ 276 (703)
+....+.+.++.++.-+||+++||+|||.. +|.+.+-.-. ..+.++.++-|.|--|..+.+.+.+ ++...+-.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~lle~g~----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLLEEGL----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHHhhhc----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 445666677777888899999999999974 4433321111 1234788888998666666655543 33322321
Q ss_pred EEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccc-cccCCCh-HHHHHHHHHcCCCceE
Q 005313 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-MLDMGFE-PQIRKIVKEVPARRQT 354 (703)
Q Consensus 277 v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~-ml~~gf~-~~i~~il~~l~~~~q~ 354 (703)
|....--. ........|-++|.+.|+..+..... ++.+++|||||||. .++.++. ..+..++...+++.++
T Consensus 126 VGY~iRfe------~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 126 VGYSIRFE------SKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eeEEEEee------ccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 11110000 01122368999999999998876544 88999999999995 3333332 3344556677778999
Q ss_pred EEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEE-Eeccch-hHHHHHHHHHhc--CCCCeEEEEcCCHH
Q 005313 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIE-VLAPMD-KHRRLEQILRSQ--EPGSKIIVFCSTKK 430 (703)
Q Consensus 355 L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~-~~~~~~-k~~~L~~ll~~~--~~~~kvLVF~~s~~ 430 (703)
|.||||+..+ .+..++.+.-.+.+.... ..+..+|. ...... -.+.+...+... ...+.+|||.+..+
T Consensus 199 IimSATld~~---rfs~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 199 IIMSATLDAE---RFSAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred EEEecccCHH---HHHHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 9999998643 344556654334332211 11222221 111222 233344444332 34578999999999
Q ss_pred HHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecC----------
Q 005313 431 MCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF---------- 495 (703)
Q Consensus 431 ~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~---------- 495 (703)
+++.+++.|.+ .+.+..+|+.++.+++.++++--..++-+|++||++++.+|.|++|.+||+-++
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999875 356888999999999999988888887889999999999999999999997443
Q ss_pred --------CCCHHHHHHHHhccCCCCCccEEEEEEecCC
Q 005313 496 --------PTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 526 (703)
Q Consensus 496 --------P~s~~~yiQriGRagR~G~~g~~i~~~~~~d 526 (703)
|.|-....||.||+||. .+|.||-+|++.+
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred CceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 44778899999999999 5799999997643
No 109
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=5.3e-20 Score=204.67 Aligned_cols=318 Identities=17% Similarity=0.201 Sum_probs=210.6
Q ss_pred CCcHHHHHHHHHHHc----CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 196 SPTPIQAQSWPIALQ----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 196 ~p~piQ~~ai~~il~----grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
.|++||++++.++.+ +.--|+-..+|.|||+..+ ..|..+..... .-.++|||||. .|+.||..+|..|..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~k---~~~paLIVCP~-Tii~qW~~E~~~w~p 279 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSGK---LTKPALIVCPA-TIIHQWMKEFQTWWP 279 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhccc---ccCceEEEccH-HHHHHHHHHHHHhCc
Confidence 568999999988763 5677899999999997422 22222322211 11479999996 789999999999986
Q ss_pred CCCceEEEeeCCCCC------------Cchhh-hhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCCh
Q 005313 272 SSRISCTCLYGGAPK------------GPQLK-DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 338 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~------------~~~~~-~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~ 338 (703)
. +++..+++.... ...+. .......|+|+|++.|.-. ...+.-..++|+|+||.|++-+..
T Consensus 280 ~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn-- 353 (923)
T KOG0387|consen 280 P--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN-- 353 (923)
T ss_pred c--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc--
Confidence 5 566666665542 11111 1122367999999887321 123344568999999999986542
Q ss_pred HHHHHHHHHcCCCceEEEEeccC-cHHHHHHH------------------------------------------------
Q 005313 339 PQIRKIVKEVPARRQTLMYTATW-PREVRKIA------------------------------------------------ 369 (703)
Q Consensus 339 ~~i~~il~~l~~~~q~L~lSAT~-p~~v~~l~------------------------------------------------ 369 (703)
..+...+..++.. +.|.+|.|+ -+.+.++.
T Consensus 354 s~islackki~T~-~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~L 432 (923)
T KOG0387|consen 354 SKISLACKKIRTV-HRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVAL 432 (923)
T ss_pred cHHHHHHHhcccc-ceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHH
Confidence 3444444455433 345666664 11111111
Q ss_pred ----HHh-------------------------------------hcCceecccccch-----hhhccccceEEEE-----
Q 005313 370 ----ADL-------------------------------------LVNPVQVNIGNVD-----ELAANKAITQHIE----- 398 (703)
Q Consensus 370 ----~~~-------------------------------------l~~~~~i~i~~~~-----~~~~~~~i~~~~~----- 398 (703)
..| +.......+.+-. -+.....|+.|-.
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCc
Confidence 001 0000000000000 0000000111100
Q ss_pred ------------EeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHh--cCCceeEecCCCCHHHHHHHHHH
Q 005313 399 ------------VLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT--RQFGAAAIHGDKSQSERDYVLNQ 463 (703)
Q Consensus 399 ------------~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~--~~~~~~~lhg~~~~~eR~~vl~~ 463 (703)
.+....|...|..+++.. ..+.++|+|..++.+.+.|...|. +++.+..+.|..+...|..+++.
T Consensus 513 ~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~ 592 (923)
T KOG0387|consen 513 DEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDR 592 (923)
T ss_pred ccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHh
Confidence 111223566777777665 456799999999999999999998 48999999999999999999999
Q ss_pred HhcCCCc--EEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecC
Q 005313 464 FRAGRSP--VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 464 F~~G~~~--ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
|.++... +|++|.+.+-|+|+..++-||.||+-|||..-.|..-|+.|.|++..+++|-.-.
T Consensus 593 Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 593 FNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred hcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEec
Confidence 9977654 6889999999999999999999999999999999999999999987777765433
No 110
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.85 E-value=4e-19 Score=205.39 Aligned_cols=127 Identities=22% Similarity=0.361 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHh-cCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 005313 404 DKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARG 481 (703)
Q Consensus 404 ~k~~~L~~ll~~-~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~G 481 (703)
.+...|...++. ...+.++||||++++.++.|++.|.+ ++.+..+|+++++.+|.++++.|+.|++.|||||+++++|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 344455544443 45678999999999999999999984 6889999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEec-----CCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHH
Q 005313 482 LDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYAS 531 (703)
Q Consensus 482 IDIp~v~~VI~~d-----~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~ 531 (703)
+|+|++++||++| +|.+...|+||+||+||. ..|.+++|++..+.....
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ 559 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQK 559 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHH
Confidence 9999999999998 799999999999999998 689999999876554333
No 111
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.85 E-value=2.1e-20 Score=215.66 Aligned_cols=327 Identities=16% Similarity=0.216 Sum_probs=215.8
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 195 SSPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 195 ~~p~piQ~~ai~~il----~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
.+++.||.+.+++++ .+.++|+..++|.|||+.-+ ..|.++...... ....|||+|... +..|..+|..|.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~~~---~gpflvvvplst-~~~W~~ef~~w~ 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSLQI---HGPFLVVVPLST-ITAWEREFETWT 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhhhc---cCCeEEEeehhh-hHHHHHHHHHHh
Confidence 378999999998887 56899999999999997422 223333221111 235799999754 456788888886
Q ss_pred CCCCceEEEeeCCCCCCchhhhhc----C-----CCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHH
Q 005313 271 KSSRISCTCLYGGAPKGPQLKDID----R-----GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQI 341 (703)
Q Consensus 271 ~~~~i~v~~~~gg~~~~~~~~~l~----~-----g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i 341 (703)
.+++++.+|.....+.++... . .++++|+|++.++.-.. .+.--.+.+++|||||++-+. ...+
T Consensus 444 ---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~~~l 516 (1373)
T KOG0384|consen 444 ---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--ESKL 516 (1373)
T ss_pred ---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--HHHH
Confidence 578888888877666655432 1 38899999999865322 222335689999999998654 2333
Q ss_pred HHHHHHcCCCceEEEEeccCc-HHHHHHHHHh-hcCceeccccc-------------------------------chhhh
Q 005313 342 RKIVKEVPARRQTLMYTATWP-REVRKIAADL-LVNPVQVNIGN-------------------------------VDELA 388 (703)
Q Consensus 342 ~~il~~l~~~~q~L~lSAT~p-~~v~~l~~~~-l~~~~~i~i~~-------------------------------~~~~~ 388 (703)
...+..+.-+. .|++|.|+- +.++++...+ +..|..+.... ..+..
T Consensus 517 ~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 44455554444 466777753 3344433211 01111100000 00000
Q ss_pred ccc------------------------------------------------cceEEEEEeccc-h----hH------HH-
Q 005313 389 ANK------------------------------------------------AITQHIEVLAPM-D----KH------RR- 408 (703)
Q Consensus 389 ~~~------------------------------------------------~i~~~~~~~~~~-~----k~------~~- 408 (703)
... .++.|-..+... + .. ..
T Consensus 596 lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L 675 (1373)
T KOG0384|consen 596 LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEAL 675 (1373)
T ss_pred CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHH
Confidence 000 000111111110 0 00 12
Q ss_pred ------------HHHHHHh-cCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhc---CCCcE
Q 005313 409 ------------LEQILRS-QEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRA---GRSPV 471 (703)
Q Consensus 409 ------------L~~ll~~-~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~---G~~~I 471 (703)
|..+|-. ...+++||||....++.+.|+++|. +.|+...|.|.+..+.|+.+++.|.. ....+
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 2223322 2456899999999999999999998 78999999999999999999999974 45568
Q ss_pred EEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 472 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 472 LVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
|+||.+.+-|||+..+++||+||.-|||..-+|..-|++|.|++..+-+|-.-....+.++++
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEil 818 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEIL 818 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHH
Confidence 999999999999999999999999999999999999999999987766655444444444443
No 112
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.84 E-value=6.4e-20 Score=206.78 Aligned_cols=157 Identities=16% Similarity=0.194 Sum_probs=115.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc-CCCC
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG-KSSR 274 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~-~~~~ 274 (703)
.|-.||.+.+..+-.++.++|+|||.+|||++-..++=..+..... ..||+++|+++|+.|+...+..-. ..+-
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~-----~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDS-----DVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCC-----CEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 5778999999999999999999999999998766665555555333 389999999999999877765543 3332
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh---ccccccCcccEEEecccccccCCChHHHHHHHHHcCCC
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM---RRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 351 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~---~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~ 351 (703)
...+.+.|....+.++.. -.|+|+|+-|+.|..++.. ......++.+||+||+|.+..+.-...++.++... .
T Consensus 586 ~rg~sl~g~ltqEYsinp--~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~ 661 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQEYSINP--WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--P 661 (1330)
T ss_pred ccchhhHhhhhHHhcCCc--hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--C
Confidence 333444444433333221 1399999999999988876 44557889999999999987765444455554443 3
Q ss_pred ceEEEEeccC
Q 005313 352 RQTLMYTATW 361 (703)
Q Consensus 352 ~q~L~lSAT~ 361 (703)
+.+|++|||+
T Consensus 662 CP~L~LSATi 671 (1330)
T KOG0949|consen 662 CPFLVLSATI 671 (1330)
T ss_pred CCeeEEeccc
Confidence 5589999997
No 113
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.84 E-value=1e-18 Score=199.44 Aligned_cols=319 Identities=17% Similarity=0.205 Sum_probs=205.7
Q ss_pred CCcHHHHHHHHHHHcC----------CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005313 196 SPTPIQAQSWPIALQS----------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDE 265 (703)
Q Consensus 196 ~p~piQ~~ai~~il~g----------rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~ 265 (703)
.++|+|.+.+..+... ..+|+...+|+|||+..+.-+..++...+.....-.+.|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 6799999999887642 23677789999999987766666666654422222478999995 899999999
Q ss_pred HHHhcCCCCceEEEeeCCCCCCchhhh---------hcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC
Q 005313 266 AVKFGKSSRISCTCLYGGAPKGPQLKD---------IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336 (703)
Q Consensus 266 ~~k~~~~~~i~v~~~~gg~~~~~~~~~---------l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g 336 (703)
|.+|.....+....+++.... .|.. .....-|+|.+++.+.+.+. .+.+..+++||+||.|++-+.
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~--~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS--SWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHhccccccceeeeecccch--hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch-
Confidence 999987666777777776653 1111 11125699999999976655 455677899999999997554
Q ss_pred ChHHHHHHHHHcCCCceEEEEeccCcH-H---------------------------------------------------
Q 005313 337 FEPQIRKIVKEVPARRQTLMYTATWPR-E--------------------------------------------------- 364 (703)
Q Consensus 337 f~~~i~~il~~l~~~~q~L~lSAT~p~-~--------------------------------------------------- 364 (703)
...+.+.+..+.-.+ .|++|.|+-. +
T Consensus 392 -~s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 344455555554444 4677888610 0
Q ss_pred HHHHHHHhhcCcee--------------cccc-------cchhhhc-----------------------cccceE-----
Q 005313 365 VRKIAADLLVNPVQ--------------VNIG-------NVDELAA-----------------------NKAITQ----- 395 (703)
Q Consensus 365 v~~l~~~~l~~~~~--------------i~i~-------~~~~~~~-----------------------~~~i~~----- 395 (703)
+..+...++..... +-+. ....+.. ...+..
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 11111111110000 0000 0000000 000000
Q ss_pred --------------------EEEEeccchhHHHHHHHHHhcCCCCeEEEEc----CCHHHHHHHHHHHh-cCCceeEecC
Q 005313 396 --------------------HIEVLAPMDKHRRLEQILRSQEPGSKIIVFC----STKKMCDQLARNLT-RQFGAAAIHG 450 (703)
Q Consensus 396 --------------------~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~----~s~~~a~~la~~L~-~~~~~~~lhg 450 (703)
.........|...|..++... .+++++|| +-+...+.+..... +++.+..+||
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~--~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI--REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH--hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 000000011333344444222 12344443 44444444444443 4788999999
Q ss_pred CCCHHHHHHHHHHHhcCCCc---EEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEec
Q 005313 451 DKSQSERDYVLNQFRAGRSP---VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGD 524 (703)
Q Consensus 451 ~~~~~eR~~vl~~F~~G~~~---ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~ 524 (703)
.++..+|+.+++.|++-... +|.+|.+.+.||++-+.+.||.||..||++.-.|.+.|+.|.||+..|++|-.-
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLl 704 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLL 704 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEee
Confidence 99999999999999865443 678889999999999999999999999999999999999999999999988653
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.83 E-value=8.1e-19 Score=200.16 Aligned_cols=284 Identities=23% Similarity=0.331 Sum_probs=195.4
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005313 188 EVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAV 267 (703)
Q Consensus 188 ~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~ 267 (703)
-+.++-...|+..|.--...++.|+++-++||||.|||. |.+.+-.++.. .+.++++|+||..|+.|.++.+.
T Consensus 74 fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~------kgkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 74 FFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK------KGKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred HHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHh------cCCeEEEEecCHHHHHHHHHHHH
Confidence 344443349999999999999999999999999999995 33333233322 24699999999999999999999
Q ss_pred HhcCCCC-ceEEE-eeCCCCC---CchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEEEecccccccC------
Q 005313 268 KFGKSSR-ISCTC-LYGGAPK---GPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM------ 335 (703)
Q Consensus 268 k~~~~~~-i~v~~-~~gg~~~---~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~------ 335 (703)
++....+ ..+.. .++..+. .+.+..+.+ .+||+|+|.+-|...+.. +.-.+|++|++|.+|.++..
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHH
Confidence 9986655 44333 3343332 334555665 499999999888665542 22247899999999976532
Q ss_pred -----CChHH-------HHHHHHHc------------------------CCCceEEEEeccCcH-H-HHHHHHHhhcCce
Q 005313 336 -----GFEPQ-------IRKIVKEV------------------------PARRQTLMYTATWPR-E-VRKIAADLLVNPV 377 (703)
Q Consensus 336 -----gf~~~-------i~~il~~l------------------------~~~~q~L~lSAT~p~-~-v~~l~~~~l~~~~ 377 (703)
||... +..+...+ .+.-+++..|||..+ . -..+++.++..
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF-- 302 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF-- 302 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC--
Confidence 22221 11111111 133578999999632 2 23445555442
Q ss_pred ecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCC---HHHHHHHHHHHhc-CCceeEecCCCC
Q 005313 378 QVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCST---KKMCDQLARNLTR-QFGAAAIHGDKS 453 (703)
Q Consensus 378 ~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s---~~~a~~la~~L~~-~~~~~~lhg~~~ 453 (703)
.++....... +|.+.+... .....+..+++.... -.|||++. ++.++.+++.|+. ++.+..+|+.
T Consensus 303 --evG~~~~~LR--NIvD~y~~~---~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-- 371 (1187)
T COG1110 303 --EVGSGGEGLR--NIVDIYVES---ESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-- 371 (1187)
T ss_pred --ccCccchhhh--heeeeeccC---ccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc--
Confidence 3333222222 243333333 455566777777654 57999999 9999999999985 5889888873
Q ss_pred HHHHHHHHHHHhcCCCcEEEEc----ccccccCCCCC-ccEEEEecCC
Q 005313 454 QSERDYVLNQFRAGRSPVLVAT----DVAARGLDIKD-IRVVVNYDFP 496 (703)
Q Consensus 454 ~~eR~~vl~~F~~G~~~ILVaT----dv~~~GIDIp~-v~~VI~~d~P 496 (703)
.++.++.|..|++++||.+ .++-||||+|. +.++|+++.|
T Consensus 372 ---~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 ---KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ---chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 3678999999999999987 48999999996 7899999887
No 115
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.83 E-value=4.8e-19 Score=195.47 Aligned_cols=306 Identities=20% Similarity=0.276 Sum_probs=200.5
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-HhcCCCCc
Q 005313 197 PTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAV-KFGKSSRI 275 (703)
Q Consensus 197 p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~-k~~~~~~i 275 (703)
.+.+-.+.+..+.+++-+||+++||||||. .+|-+ +...--. ...++.+.-|+|.-|..++.... +.....+-
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG~~--~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAGFA--SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhcccc--cCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 355667788888888899999999999997 44433 2221111 11248888899876666554433 22222221
Q ss_pred eEE--EeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccc-cccCC-ChHHHHHHHHHcCCC
Q 005313 276 SCT--CLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-MLDMG-FEPQIRKIVKEVPAR 351 (703)
Q Consensus 276 ~v~--~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~-ml~~g-f~~~i~~il~~l~~~ 351 (703)
.|. .-+.+.. .....|.+.|-+.|++.+.... .+.++++|||||||. -+..+ ..-.+++++.. .+.
T Consensus 126 ~VGY~IRFed~t--------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~ 195 (674)
T KOG0922|consen 126 EVGYTIRFEDST--------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPD 195 (674)
T ss_pred eeeeEEEecccC--------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCC
Confidence 111 1111111 1126799999999988766433 478999999999995 11111 11223333332 345
Q ss_pred ceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchh-HHHHHHHHH--hcCCCCeEEEEcCC
Q 005313 352 RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDK-HRRLEQILR--SQEPGSKIIVFCST 428 (703)
Q Consensus 352 ~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k-~~~L~~ll~--~~~~~~kvLVF~~s 428 (703)
.++|++|||+.. +.+..|+.+...+.+.... ..+...+......+- .+.+..+++ ..++.+-+|||...
T Consensus 196 LklIimSATlda---~kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtG 267 (674)
T KOG0922|consen 196 LKLIIMSATLDA---EKFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTG 267 (674)
T ss_pred ceEEEEeeeecH---HHHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCC
Confidence 689999999863 4456666663333332211 112222211111111 122222222 22555689999999
Q ss_pred HHHHHHHHHHHhcCC---------ceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecC----
Q 005313 429 KKMCDQLARNLTRQF---------GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF---- 495 (703)
Q Consensus 429 ~~~a~~la~~L~~~~---------~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~---- 495 (703)
.++++.+++.|.+.. -+..+|+.++.+++.++++.-..|..+|+++|++++..|.|+++.+||+-++
T Consensus 268 qeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~ 347 (674)
T KOG0922|consen 268 QEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQK 347 (674)
T ss_pred HHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEE
Confidence 999999999987531 2467999999999999999888899999999999999999999999997443
Q ss_pred --------------CCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 496 --------------PTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 496 --------------P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
|.|..+-.||.||+||. .+|+||-++++.+.
T Consensus 348 ~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 348 KYNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred eeccccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 55788999999999999 56999999987654
No 116
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=3.9e-20 Score=195.93 Aligned_cols=320 Identities=21% Similarity=0.263 Sum_probs=214.3
Q ss_pred CCCcHHHHHHHHHHHcC---CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 195 SSPTPIQAQSWPIALQS---RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~g---rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
..++|||+.++..+..+ +.-||+.|.|+|||++-+-+++ .+. +.+||||.+-.-++||..+|..|..
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-tik---------K~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TIK---------KSCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-eec---------ccEEEEecCccCHHHHHHHHHhhcc
Confidence 57899999999998864 5789999999999987654332 222 3799999999999999999999876
Q ss_pred CCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHH--------hccccccCcccEEEecccccccCCChHHHHH
Q 005313 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE--------MRRISLNQVSYLVLDEADRMLDMGFEPQIRK 343 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~--------~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~ 343 (703)
...-.++..+.+... ....++.|+|+|+.++..--+ ...+.-..+.++|+||+|.+..+-|+..+.-
T Consensus 371 i~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsi 445 (776)
T KOG1123|consen 371 IQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSI 445 (776)
T ss_pred cCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHH
Confidence 554445444443321 234468999999977632111 1112235678899999998766556555544
Q ss_pred HHHHcCCCceEEEEeccCcHHHHHHHH-HhhcCceecccccchhhhccccce--EE------------------------
Q 005313 344 IVKEVPARRQTLMYTATWPREVRKIAA-DLLVNPVQVNIGNVDELAANKAIT--QH------------------------ 396 (703)
Q Consensus 344 il~~l~~~~q~L~lSAT~p~~v~~l~~-~~l~~~~~i~i~~~~~~~~~~~i~--~~------------------------ 396 (703)
+...+ -|++|||+-++..++.. +||..|..... +..++.....|. |.
T Consensus 446 v~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEA-nWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 446 VQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEA-NWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHh-----hccceeEEeeccccccccceeecchhhhc-cHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 44444 49999998666554432 22222222111 112222221111 11
Q ss_pred EEEeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHHHHHHHHh-cCCCcEEEE
Q 005313 397 IEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFR-AGRSPVLVA 474 (703)
Q Consensus 397 ~~~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~~vl~~F~-~G~~~ILVa 474 (703)
...+-...|+.....+++-+ ..+.|+|||..+.-....+|-.|.+ -.|+|..++.+|..|++.|+ +.+++-|+.
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 11222334555555555543 4678999999999999999888865 35889999999999999998 456788999
Q ss_pred cccccccCCCCCccEEEEecCC-CCHHHHHHHHhccCCCCCc------cEEEEEEecCCh--HHHHHHHHHHHh
Q 005313 475 TDVAARGLDIKDIRVVVNYDFP-TGVEDYVHRIGRTGRAGAT------GVAYTFFGDQDS--RYASDLIKLLEG 539 (703)
Q Consensus 475 Tdv~~~GIDIp~v~~VI~~d~P-~s~~~yiQriGRagR~G~~------g~~i~~~~~~d~--~~~~~l~~~l~~ 539 (703)
+.+....||+|..+++|+...- -|..+-.||+||..|+.+. ...|++++.+.. -+..+-.++|-.
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~FLid 669 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQFLID 669 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhhhhhh
Confidence 9999999999999999987653 4788999999999998531 344555554432 233444455543
No 117
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.83 E-value=1.2e-19 Score=201.46 Aligned_cols=332 Identities=18% Similarity=0.255 Sum_probs=222.7
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 196 SPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 196 ~p~piQ~~ai~~il----~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
++.+||.-.++++. ++-+.|+..++|.|||.. +|+.|.+|...-. .| .-|||||...| +.|..+|.+||.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~---~g-pHLVVvPsSTl-eNWlrEf~kwCP 472 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN---PG-PHLVVVPSSTL-ENWLREFAKWCP 472 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC---CC-CcEEEecchhH-HHHHHHHHHhCC
Confidence 57899999998875 345779999999999964 4555666655322 23 46999998655 678999999996
Q ss_pred CCCceEEEeeCCCCCCchhhhhc----CCCcEEEECHHHHHHHHH-hccccccCcccEEEecccccccCCChHHHHHHHH
Q 005313 272 SSRISCTCLYGGAPKGPQLKDID----RGVDIVVATPGRLNDILE-MRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK 346 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~l~----~g~dIlV~Tp~~L~~~l~-~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~ 346 (703)
. +.+.+.||....+..++... ..++|+|+|+..+..--. ...+...+++++|+||+|.+-++. ...+..++.
T Consensus 473 s--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~ 549 (941)
T KOG0389|consen 473 S--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMS 549 (941)
T ss_pred c--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcc
Confidence 5 77888999886665555432 258999999987643221 112334568999999999766653 455555554
Q ss_pred HcCCCceEEEEeccCcH-HHHHHHHHh-----------------------------------------------------
Q 005313 347 EVPARRQTLMYTATWPR-EVRKIAADL----------------------------------------------------- 372 (703)
Q Consensus 347 ~l~~~~q~L~lSAT~p~-~v~~l~~~~----------------------------------------------------- 372 (703)
. + ..+.|++|.|+-. ++.+++..+
T Consensus 550 I-~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 550 I-N-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred c-c-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3 2 3345777777511 111110000
Q ss_pred -----hcC-ce---eccc----------------------ccc--h-------------hhhcc----------------
Q 005313 373 -----LVN-PV---QVNI----------------------GNV--D-------------ELAAN---------------- 390 (703)
Q Consensus 373 -----l~~-~~---~i~i----------------------~~~--~-------------~~~~~---------------- 390 (703)
|.+ |. .|.. ... . .++.+
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 000 00 0000 000 0 00000
Q ss_pred -------------------------------ccceEE---------EEEeccchhHHHHHHHHHhc-CCCCeEEEEcCCH
Q 005313 391 -------------------------------KAITQH---------IEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTK 429 (703)
Q Consensus 391 -------------------------------~~i~~~---------~~~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~ 429 (703)
..+.++ -..+-...|...|..+|... ..+.+||||....
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 000000 00011223556677777655 4568999999999
Q ss_pred HHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCC-C-cEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHH
Q 005313 430 KMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGR-S-PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506 (703)
Q Consensus 430 ~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~-~-~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQri 506 (703)
.+.+.|...|. .++....+.|...-.+|..+++.|...+ + -+|++|.+.+-|||+..+++||.+|+..++-+-.|.-
T Consensus 788 qmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAE 867 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAE 867 (941)
T ss_pred HHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhH
Confidence 99999999997 5788999999999999999999998554 3 3689999999999999999999999999999999999
Q ss_pred hccCCCCCccEEEEEEecCChHHHHHHHHHHH
Q 005313 507 GRTGRAGATGVAYTFFGDQDSRYASDLIKLLE 538 (703)
Q Consensus 507 GRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~ 538 (703)
-|++|.|+...+.++-.-.+..+.+.+.++.+
T Consensus 868 DRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~ 899 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKSTIEEGILRLAK 899 (941)
T ss_pred HHHHhhCCcceeEEEEEEecCcHHHHHHHHHH
Confidence 99999999887777665555555555555543
No 118
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.83 E-value=2.4e-19 Score=176.39 Aligned_cols=185 Identities=43% Similarity=0.664 Sum_probs=151.8
Q ss_pred CCCCCCcHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 192 AGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 192 ~g~~~p~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
.++..++++|.+++..++.. +.+++.++||+|||.+++.+++..+.... ..++||++|+..++.|+...+.++.
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----GKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----CCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 46778999999999999999 99999999999999988888887766522 2479999999999999999999887
Q ss_pred CCCCceEEEeeCCCCCCchhhhhcCCC-cEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcC
Q 005313 271 KSSRISCTCLYGGAPKGPQLKDIDRGV-DIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 349 (703)
Q Consensus 271 ~~~~i~v~~~~gg~~~~~~~~~l~~g~-dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~ 349 (703)
...........++......+..+.... +|+++|++.|.+.+.........+++|||||+|++....+...+..++..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 79 PSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred ccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 665534445555554445555555555 9999999999999887666777899999999999886567888889998888
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhcCceeccc
Q 005313 350 ARRQTLMYTATWPREVRKIAADLLVNPVQVNI 381 (703)
Q Consensus 350 ~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i 381 (703)
...+++++|||+++.....+..++.....+..
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred ccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 88999999999998888888888776555544
No 119
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=3.9e-19 Score=193.90 Aligned_cols=307 Identities=18% Similarity=0.230 Sum_probs=212.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-Hh--
Q 005313 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAV-KF-- 269 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~-k~-- 269 (703)
.....+++-.+.+.++....-+||++.||||||. .||-+.+-.-..+ .+.++-+.-|.|.-|.-+..... +.
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk---~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTK---GGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhccccc---CCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 3456788899999999999999999999999996 5664443222111 23457777899988877654432 22
Q ss_pred --cCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccc-cccCCChHHHHHHHH
Q 005313 270 --GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-MLDMGFEPQIRKIVK 346 (703)
Q Consensus 270 --~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~-ml~~gf~~~i~~il~ 346 (703)
+...+..+-. -+.. ....-|-++|-++|+.-+.. ..+|..+++|||||||. .+..+..-.+.+-+.
T Consensus 337 kLG~eVGYsIRF--EdcT--------SekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIa 405 (902)
T KOG0923|consen 337 KLGHEVGYSIRF--EDCT--------SEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIA 405 (902)
T ss_pred ccccccceEEEe--cccc--------CcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHH
Confidence 2222322211 1111 11256889999999886654 45688999999999994 333333333334445
Q ss_pred HcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHh---cCCCCeEE
Q 005313 347 EVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS---QEPGSKII 423 (703)
Q Consensus 347 ~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~---~~~~~kvL 423 (703)
.+.++.++|+.|||+.. +-+..|+.+...+.+.... ..+..++....+.+-.+.....+.+ ..+.+-+|
T Consensus 406 r~RpdLKllIsSAT~DA---ekFS~fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDIL 477 (902)
T KOG0923|consen 406 RFRPDLKLLISSATMDA---EKFSAFFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDIL 477 (902)
T ss_pred hhCCcceEEeeccccCH---HHHHHhccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCCccEE
Confidence 56788999999999863 3345666654444442211 1133333334444444433332222 24557899
Q ss_pred EEcCCHHHHHHHHHHHhc----------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEe
Q 005313 424 VFCSTKKMCDQLARNLTR----------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNY 493 (703)
Q Consensus 424 VF~~s~~~a~~la~~L~~----------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~ 493 (703)
||..-.++++.+.+.|.+ .+.++.+|+.++.+.+.+|++--..|..+|++||++++..|.|++|.+||+-
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDp 557 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDP 557 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecC
Confidence 999999988888877754 3568889999999999999998889999999999999999999999999975
Q ss_pred cC------------------CCCHHHHHHHHhccCCCCCccEEEEEEec
Q 005313 494 DF------------------PTGVEDYVHRIGRTGRAGATGVAYTFFGD 524 (703)
Q Consensus 494 d~------------------P~s~~~yiQriGRagR~G~~g~~i~~~~~ 524 (703)
++ |.|...-.||.||+||.| +|+|+-+++.
T Consensus 558 Gf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 558 GFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred ccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 43 446778899999999995 5999999973
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.83 E-value=1.5e-18 Score=201.91 Aligned_cols=143 Identities=21% Similarity=0.349 Sum_probs=116.8
Q ss_pred hHHHHHHHHHh-cCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccC
Q 005313 405 KHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGL 482 (703)
Q Consensus 405 k~~~L~~ll~~-~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GI 482 (703)
+...|...++. ...+.++||||++++.++.+++.|.+ ++.+..+|+++++.+|..+++.|+.|++.|||||+++++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 34445444443 35678999999999999999999984 68899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecC-----CCCHHHHHHHHhccCCCCCccEEEEEEecC---------ChHHHHHHHHHHHhccCcccHHH
Q 005313 483 DIKDIRVVVNYDF-----PTGVEDYVHRIGRTGRAGATGVAYTFFGDQ---------DSRYASDLIKLLEGAKQQVPREL 548 (703)
Q Consensus 483 DIp~v~~VI~~d~-----P~s~~~yiQriGRagR~G~~g~~i~~~~~~---------d~~~~~~l~~~l~~~~~~v~~~L 548 (703)
|+|++++||++|. |.+...|+||+||+||. ..|.|++|++.. +....+++...+......+|..+
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 9999999999884 78999999999999996 789999999853 33344444445555545555443
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=4.2e-18 Score=195.51 Aligned_cols=349 Identities=19% Similarity=0.223 Sum_probs=224.5
Q ss_pred CCHHHHHhcCCeEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC----CCEEEEecCCChHHH
Q 005313 151 ISSEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS----RDIVAIAKTGSGKTL 226 (703)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g----rdvlv~ApTGsGKTl 226 (703)
.....+.++--+++. ...|.+.....+...+ ....+.+-|+.++..+... +..++.+-||||||.
T Consensus 164 ~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~----------~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTE 232 (730)
T COG1198 164 SVLKGLEKKGLIEII-ELEPPLVVAPPDPSLS----------EWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTE 232 (730)
T ss_pred HHHHHHHhcCceeee-cccCCCcccccccccc----------cccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHH
Confidence 345566666667766 4433322222222221 2346788899999999876 578999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCC---chhhhhcC-CCcEEEE
Q 005313 227 GYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG---PQLKDIDR-GVDIVVA 302 (703)
Q Consensus 227 a~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~---~~~~~l~~-g~dIlV~ 302 (703)
+|+-.+-..+.. |..+|||+|-++|..|+.+.|+..+. ..+..++.+.... ..|..... ...|||+
T Consensus 233 vYl~~i~~~L~~-------GkqvLvLVPEI~Ltpq~~~rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 233 VYLEAIAKVLAQ-------GKQVLVLVPEIALTPQLLARFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred HHHHHHHHHHHc-------CCEEEEEeccccchHHHHHHHHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 998877777665 66999999999999999999987654 4555566655443 34445544 5899999
Q ss_pred CHHHHHHHHHhccccccCcccEEEecccccccC-----CChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCce
Q 005313 303 TPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-----GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPV 377 (703)
Q Consensus 303 Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~-----gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~ 377 (703)
|-..| ...++++.+|||||=|.-.-. -+...-..++.....++++|+-|||+.-+....+ .-....
T Consensus 303 tRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~--~~g~y~ 373 (730)
T COG1198 303 TRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANA--ESGKYK 373 (730)
T ss_pred echhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhh--hcCceE
Confidence 96555 345788999999999964321 1223333444444567889999999864433332 222122
Q ss_pred ecccccchhhhccccceEEEEEeccchh------HHHHHHHHHhcCCCCeEEEEcCCHH---------------------
Q 005313 378 QVNIGNVDELAANKAITQHIEVLAPMDK------HRRLEQILRSQEPGSKIIVFCSTKK--------------------- 430 (703)
Q Consensus 378 ~i~i~~~~~~~~~~~i~~~~~~~~~~~k------~~~L~~ll~~~~~~~kvLVF~~s~~--------------------- 430 (703)
.+.+..... .....-...+.+.....+ ...+..+-+....++.+|+|.|.+-
T Consensus 374 ~~~L~~R~~-~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~ 452 (730)
T COG1198 374 LLRLTNRAG-RARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDS 452 (730)
T ss_pred EEEcccccc-ccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCc
Confidence 222222111 010111111222211111 2334444445567778888876542
Q ss_pred ---------------------------------------HHHHHHHHHhc---CCceeEecCCCCHHH--HHHHHHHHhc
Q 005313 431 ---------------------------------------MCDQLARNLTR---QFGAAAIHGDKSQSE--RDYVLNQFRA 466 (703)
Q Consensus 431 ---------------------------------------~a~~la~~L~~---~~~~~~lhg~~~~~e--R~~vl~~F~~ 466 (703)
-.+++++.|.+ +.+++.+.+|.+... -+..+..|.+
T Consensus 453 ~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ 532 (730)
T COG1198 453 PLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFAN 532 (730)
T ss_pred ceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhC
Confidence 23444444443 345777888876533 5678999999
Q ss_pred CCCcEEEEcccccccCCCCCccEEEEecCCC------------CHHHHHHHHhccCCCCCccEEEEEEecCChHHH
Q 005313 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPT------------GVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYA 530 (703)
Q Consensus 467 G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~------------s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~ 530 (703)
|+.+|||.|.+++.|.|+|++++|...|... ....+.|-.||+||.+++|.+++-.-..+....
T Consensus 533 ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i 608 (730)
T COG1198 533 GEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAI 608 (730)
T ss_pred CCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHH
Confidence 9999999999999999999999876654321 234567899999999999999987766654433
No 122
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.82 E-value=2.2e-18 Score=199.63 Aligned_cols=316 Identities=18% Similarity=0.225 Sum_probs=216.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh-cCCCC
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF-GKSSR 274 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~-~~~~~ 274 (703)
..+..+.++|.++.+...++++++||+|||.....-++....... ...++++--|+|--|.-+++.+.+- +...+
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 457889999999999999999999999999854444444443322 3467888899987777766665432 22223
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccc-cccCCChHHHHHHHHHcCCCce
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-MLDMGFEPQIRKIVKEVPARRQ 353 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~-ml~~gf~~~i~~il~~l~~~~q 353 (703)
-.|........ .......+++||.+.|++.+.. .-.+..+..||+||+|. -++.+|.-.+.+.+-...++.+
T Consensus 249 ~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 249 EEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred CeeeEEEeeec------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 11111111110 1112267999999999998876 45578899999999994 3445566666666666678999
Q ss_pred EEEEeccCcHHHHHHHHHhhcCceecccccch---------h-hhccccc----eEE------------EEEeccchhHH
Q 005313 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVD---------E-LAANKAI----TQH------------IEVLAPMDKHR 407 (703)
Q Consensus 354 ~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~---------~-~~~~~~i----~~~------------~~~~~~~~k~~ 407 (703)
+|+||||+. .+.+..|+.....+.+.... + +...... .+. +..........
T Consensus 322 vILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 999999986 34445555443333321100 0 0000000 000 11112223444
Q ss_pred HHHHHHHhc---CCCCeEEEEcCCHHHHHHHHHHHhc--------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 005313 408 RLEQILRSQ---EPGSKIIVFCSTKKMCDQLARNLTR--------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 476 (703)
Q Consensus 408 ~L~~ll~~~---~~~~kvLVF~~s~~~a~~la~~L~~--------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd 476 (703)
.+..++... ...+.+|||.+...++..+...|.. .+-+..+|+.++..+++.+....-.|..+||++|.
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 454544433 4457999999999999999999853 25678899999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEe--------cCC----------CCHHHHHHHHhccCCCCCccEEEEEEecCC
Q 005313 477 VAARGLDIKDIRVVVNY--------DFP----------TGVEDYVHRIGRTGRAGATGVAYTFFGDQD 526 (703)
Q Consensus 477 v~~~GIDIp~v~~VI~~--------d~P----------~s~~~yiQriGRagR~G~~g~~i~~~~~~d 526 (703)
+++..|.|++|-+||+. |.- .+...-.||.||+||. ..|.||.+++...
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 99999999999999974 332 2556778999999999 8899999997543
No 123
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.81 E-value=1.8e-18 Score=198.90 Aligned_cols=331 Identities=19% Similarity=0.254 Sum_probs=216.2
Q ss_pred CCcHHHHHHHHHHH--c--CCCEEEEecCCChHHHHHHHHH-HHHHhhc-cCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 196 SPTPIQAQSWPIAL--Q--SRDIVAIAKTGSGKTLGYLLPG-FIHLKRC-RNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 196 ~p~piQ~~ai~~il--~--grdvlv~ApTGsGKTla~llp~-l~~l~~~-~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
.++.||++.++++. + +-+-|+|..+|.|||+..+..+ ..+..+. ....-.....|||||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 57899999988764 2 3478999999999998643222 2222221 1111112358999996 8999999999999
Q ss_pred cCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcC
Q 005313 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 349 (703)
Q Consensus 270 ~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~ 349 (703)
+.. +++...+|....+..++.--+..+|+|++|+.+.+.+.. +.-.++.|+|+||-|-|-+. ...+.+.++.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 876 566666666555444444444579999999998653331 12235689999999977543 455666666666
Q ss_pred CCceEEEEeccC-cHHHHHHH-----------------------------------------------------------
Q 005313 350 ARRQTLMYTATW-PREVRKIA----------------------------------------------------------- 369 (703)
Q Consensus 350 ~~~q~L~lSAT~-p~~v~~l~----------------------------------------------------------- 369 (703)
.+. .|.+|.|+ -+++.++.
T Consensus 1128 a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 555 46677885 11111110
Q ss_pred -----------------------------HHhhcC---ceecccccchhhhcc-------------ccceEEEEE-e---
Q 005313 370 -----------------------------ADLLVN---PVQVNIGNVDELAAN-------------KAITQHIEV-L--- 400 (703)
Q Consensus 370 -----------------------------~~~l~~---~~~i~i~~~~~~~~~-------------~~i~~~~~~-~--- 400 (703)
+++... .+...+.. .+.... ...+.+... .
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~-~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDG-GEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhcccccccccc-chhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 000000 00000000 000000 000111111 1
Q ss_pred ---------------------ccchhHHHHHHHHHhcC---------------CCCeEEEEcCCHHHHHHHHHHHhcC--
Q 005313 401 ---------------------APMDKHRRLEQILRSQE---------------PGSKIIVFCSTKKMCDQLARNLTRQ-- 442 (703)
Q Consensus 401 ---------------------~~~~k~~~L~~ll~~~~---------------~~~kvLVF~~s~~~a~~la~~L~~~-- 442 (703)
...-|...|.++|.... .++++||||+-+.+++.+.+.|.+.
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 11225556667665421 3579999999999999999888653
Q ss_pred --CceeEecCCCCHHHHHHHHHHHhcC-CCcEE-EEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEE
Q 005313 443 --FGAAAIHGDKSQSERDYVLNQFRAG-RSPVL-VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVA 518 (703)
Q Consensus 443 --~~~~~lhg~~~~~eR~~vl~~F~~G-~~~IL-VaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~ 518 (703)
+....+.|..++.+|.++.++|+++ .++|| ++|-+.+-|+|+.+.++||+++..||+..-+|.+-||+|.|++..+
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 2344789999999999999999988 67764 5778999999999999999999999999999999999999998877
Q ss_pred EEEEecCChHHHHHHHH
Q 005313 519 YTFFGDQDSRYASDLIK 535 (703)
Q Consensus 519 i~~~~~~d~~~~~~l~~ 535 (703)
-+|-.-......++++.
T Consensus 1446 NVyRlItrGTLEEKVMg 1462 (1549)
T KOG0392|consen 1446 NVYRLITRGTLEEKVMG 1462 (1549)
T ss_pred eeeeehhcccHHHHHhh
Confidence 76655554444444443
No 124
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.81 E-value=1.1e-18 Score=185.10 Aligned_cols=314 Identities=16% Similarity=0.217 Sum_probs=209.5
Q ss_pred CCCCcHHHHHHHHHHHc-CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 194 FSSPTPIQAQSWPIALQ-SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 194 ~~~p~piQ~~ai~~il~-grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
+..+.|+|.+.+...++ |-.+++...+|.|||+.++..+-.+... ..+|||||. .|...|.+++..|+..
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE--------wplliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE--------WPLLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc--------CcEEEEecH-HHhHHHHHHHHHhccc
Confidence 45678999999988775 4678888999999998876433333222 478999996 6778899999999876
Q ss_pred CCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCc
Q 005313 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 352 (703)
Q Consensus 273 ~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~ 352 (703)
... +.++.++.+. ..++.....|.|.+++.|..+-. .+....+.+||+||+|++-+ .-....+.++..+....
T Consensus 267 ~~p-i~vv~~~~D~---~~~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~-sktkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDP---LPDVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKD-SKTKRTKAATDLLKVAK 339 (689)
T ss_pred ccc-eEEEecccCC---ccccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhc-cchhhhhhhhhHHHHhh
Confidence 543 4444444332 22344456799999998855433 22334588999999996544 34555666666666677
Q ss_pred eEEEEeccC----cHHHH---------------HHHHHhhc------------------------Cceeccccc---chh
Q 005313 353 QTLMYTATW----PREVR---------------KIAADLLV------------------------NPVQVNIGN---VDE 386 (703)
Q Consensus 353 q~L~lSAT~----p~~v~---------------~l~~~~l~------------------------~~~~i~i~~---~~~ 386 (703)
.+|++|.|+ |.++. ++...|.. ..+.+.--. ...
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999996 21111 11111100 000000000 000
Q ss_pred hhccccceEEEEEec---------------------cc----------------hhHHHHHHHHHh-----cCCCCeEEE
Q 005313 387 LAANKAITQHIEVLA---------------------PM----------------DKHRRLEQILRS-----QEPGSKIIV 424 (703)
Q Consensus 387 ~~~~~~i~~~~~~~~---------------------~~----------------~k~~~L~~ll~~-----~~~~~kvLV 424 (703)
+..+ ..+.+.... .+ .|...+.+.|.. ..+..|.+|
T Consensus 420 LPpK--rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflV 497 (689)
T KOG1000|consen 420 LPPK--RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLV 497 (689)
T ss_pred CCcc--ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEE
Confidence 0010 011111100 00 111222222222 245679999
Q ss_pred EcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcC-CCcE-EEEcccccccCCCCCccEEEEecCCCCHHH
Q 005313 425 FCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAG-RSPV-LVATDVAARGLDIKDIRVVVNYDFPTGVED 501 (703)
Q Consensus 425 F~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G-~~~I-LVaTdv~~~GIDIp~v~~VI~~d~P~s~~~ 501 (703)
||......+.+...+. +.++.+.|.|..+..+|....+.|+.. +++| +++..+++.||++...+.||+..++|++-.
T Consensus 498 FaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgv 577 (689)
T KOG1000|consen 498 FAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGV 577 (689)
T ss_pred EehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCce
Confidence 9999999999999998 578999999999999999999999844 4555 556678899999999999999999999999
Q ss_pred HHHHHhccCCCCCccEEEEEEecC
Q 005313 502 YVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 502 yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
.+|.--|++|.|++..+.+++.-.
T Consensus 578 LlQAEDRaHRiGQkssV~v~ylvA 601 (689)
T KOG1000|consen 578 LLQAEDRAHRIGQKSSVFVQYLVA 601 (689)
T ss_pred EEechhhhhhccccceeeEEEEEe
Confidence 999999999999987776666543
No 125
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.8e-18 Score=200.40 Aligned_cols=126 Identities=21% Similarity=0.324 Sum_probs=110.0
Q ss_pred eccchhHHHHHHHHHh-cCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 005313 400 LAPMDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV 477 (703)
Q Consensus 400 ~~~~~k~~~L~~ll~~-~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv 477 (703)
....+|...|...+.. ...+.++||||+|++.++.|++.|. ..+++.+||+ .+.+|+..+..|..+...|+|||++
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 3444677777777754 3567899999999999999999998 5788999997 6889999999999999999999999
Q ss_pred ccccCCCC---Ccc-----EEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 478 AARGLDIK---DIR-----VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 478 ~~~GIDIp---~v~-----~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
++||+||+ .|. +||.++.|.+...|.|++||+||.|.+|.+++|++..|.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999 554 459999999999999999999999999999999987664
No 126
>COG4889 Predicted helicase [General function prediction only]
Probab=99.80 E-value=3e-19 Score=198.84 Aligned_cols=351 Identities=19% Similarity=0.244 Sum_probs=204.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC----CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHH
Q 005313 183 PELLREVHNAGFSSPTPIQAQSWPIALQS----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 258 (703)
Q Consensus 183 ~~l~~~l~~~g~~~p~piQ~~ai~~il~g----rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreL 258 (703)
.++..+|.-+.-.+|+|+|++||..++.+ ..--+++.+|+|||++.|-. ...+.. .++|+|+|+..|
T Consensus 148 ~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLki-sEala~--------~~iL~LvPSIsL 218 (1518)
T COG4889 148 TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKI-SEALAA--------ARILFLVPSISL 218 (1518)
T ss_pred cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHH-HHHHhh--------hheEeecchHHH
Confidence 45666777777789999999999999876 22344456899999987643 233322 389999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEeeCCCCCC----------------chh-------h--hhcCCCcEEEECHHHHHHHHHh
Q 005313 259 ATQIQDEAVKFGKSSRISCTCLYGGAPKG----------------PQL-------K--DIDRGVDIVVATPGRLNDILEM 313 (703)
Q Consensus 259 a~Q~~~~~~k~~~~~~i~v~~~~gg~~~~----------------~~~-------~--~l~~g~dIlV~Tp~~L~~~l~~ 313 (703)
..|..+++..- +...++...++.+.... ... . +-..+--||++|++.|...-+.
T Consensus 219 LsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA 297 (1518)
T COG4889 219 LSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA 297 (1518)
T ss_pred HHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH
Confidence 99977766543 22344444333332111 000 1 1122456999999999988887
Q ss_pred ccccccCcccEEEecccccccCCChHHHHHHHHHcC-----CCceEEEEeccCcH---HHHHHHHHh-----------hc
Q 005313 314 RRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP-----ARRQTLMYTATWPR---EVRKIAADL-----------LV 374 (703)
Q Consensus 314 ~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~-----~~~q~L~lSAT~p~---~v~~l~~~~-----------l~ 374 (703)
....+..+++||+||||+.........-...+..+. +..+.|.||||+-- ..+.-+.+. ..
T Consensus 298 Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~f 377 (1518)
T COG4889 298 QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTF 377 (1518)
T ss_pred HHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhh
Confidence 788899999999999998532110000000000000 11235788999621 111111110 00
Q ss_pred CceecccccchhhhccccceEEEEEeccch-------------------hHHHHHH-------HHHhcC-----------
Q 005313 375 NPVQVNIGNVDELAANKAITQHIEVLAPMD-------------------KHRRLEQ-------ILRSQE----------- 417 (703)
Q Consensus 375 ~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~-------------------k~~~L~~-------ll~~~~----------- 417 (703)
.+....+ .+.+......++.+..++...+ ..+.... +.+...
T Consensus 378 Geef~rl-~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d 456 (1518)
T COG4889 378 GEEFHRL-GFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKAD 456 (1518)
T ss_pred chhhhcc-cHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCC
Confidence 0111111 1111111111222211111111 0111111 111110
Q ss_pred --CCCeEEEEcCCHHHHHHHHHHHhc-----------C---C--ceeEecCCCCHHHHHHHHH---HHhcCCCcEEEEcc
Q 005313 418 --PGSKIIVFCSTKKMCDQLARNLTR-----------Q---F--GAAAIHGDKSQSERDYVLN---QFRAGRSPVLVATD 476 (703)
Q Consensus 418 --~~~kvLVF~~s~~~a~~la~~L~~-----------~---~--~~~~lhg~~~~~eR~~vl~---~F~~G~~~ILVaTd 476 (703)
+-+++|-||.+++....+++.+.+ . + .+..+.|.|+..+|...+. .|...+++||--..
T Consensus 457 ~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaR 536 (1518)
T COG4889 457 TAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNAR 536 (1518)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccch
Confidence 113678899998887777766632 1 2 2344567888888855444 34567889999889
Q ss_pred cccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCC-ccEEEEEEe---------------cCChHHHHHHHHHHHhc
Q 005313 477 VAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGA-TGVAYTFFG---------------DQDSRYASDLIKLLEGA 540 (703)
Q Consensus 477 v~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~-~g~~i~~~~---------------~~d~~~~~~l~~~l~~~ 540 (703)
++.+|||+|.++.||+|++-.+..+.+|.+||+.|..+ +...|+++- ..+.+.+.++++.|...
T Consensus 537 cLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRSh 616 (1518)
T COG4889 537 CLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRSH 616 (1518)
T ss_pred hhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999643 333444432 22344555666666655
Q ss_pred cCcc
Q 005313 541 KQQV 544 (703)
Q Consensus 541 ~~~v 544 (703)
...+
T Consensus 617 D~am 620 (1518)
T COG4889 617 DEAM 620 (1518)
T ss_pred CHHh
Confidence 5433
No 127
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.4e-17 Score=178.96 Aligned_cols=164 Identities=23% Similarity=0.292 Sum_probs=123.3
Q ss_pred CceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHH-HHHHHhcCCCCeEEEEcCCH
Q 005313 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRL-EQILRSQEPGSKIIVFCSTK 429 (703)
Q Consensus 351 ~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~~~~~kvLVF~~s~ 429 (703)
..|+|++|||+.+.-.+.....+ +...+... ..+...+++.......+.| .++.+....+.++||-+-|+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~v---veQiIRPT------GLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTK 456 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNV---VEQIIRPT------GLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTK 456 (663)
T ss_pred cCCEEEEECCCChHHHHhccCce---eEEeecCC------CCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehH
Confidence 46999999998654333222111 11111111 1122223333333334444 44444456778999999999
Q ss_pred HHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecC-----CCCHHHHH
Q 005313 430 KMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF-----PTGVEDYV 503 (703)
Q Consensus 430 ~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~-----P~s~~~yi 503 (703)
++++.|.++|.+ ++++..+|++...-+|.+++++++.|.+.|||..+.+-+|||+|.|.+|.++|- ..|-...+
T Consensus 457 kmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 457 KMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 999999999984 789999999999999999999999999999999999999999999999999874 45889999
Q ss_pred HHHhccCCCCCccEEEEEEec
Q 005313 504 HRIGRTGRAGATGVAYTFFGD 524 (703)
Q Consensus 504 QriGRagR~G~~g~~i~~~~~ 524 (703)
|-||||.|- -.|.+++|.+.
T Consensus 537 QtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 537 QTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHHHhhc-cCCeEEEEchh
Confidence 999999997 56889888764
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.4e-17 Score=188.30 Aligned_cols=315 Identities=17% Similarity=0.151 Sum_probs=208.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..|+++|.-..-.+++|+ |+.+.||.|||+++.+|++..... |..|.|++|+.-||.|-++++..+...++
T Consensus 77 ~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~-------G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ-------GRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc-------CCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 388999999998888764 778999999999999998877655 56899999999999999999999999999
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhc------cccccCcccEEEecccccccCC-----------
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRMLDMG----------- 336 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~------~~~l~~~~~IViDEaH~ml~~g----------- 336 (703)
+.+.++.+..+..+ +...-.|||+++|...| .|+|..+ ......+.++||||+|.+|-..
T Consensus 148 Lsvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~ 225 (764)
T PRK12326 148 LTVGWITEESTPEE--RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGST 225 (764)
T ss_pred CEEEEECCCCCHHH--HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCC
Confidence 99999988765432 22233589999999765 3444332 1223568899999999765110
Q ss_pred ----ChHHHHHHHHHcCCC--------c----------------------------------------------------
Q 005313 337 ----FEPQIRKIVKEVPAR--------R---------------------------------------------------- 352 (703)
Q Consensus 337 ----f~~~i~~il~~l~~~--------~---------------------------------------------------- 352 (703)
....+..++..+.+. .
T Consensus 226 ~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYi 305 (764)
T PRK12326 226 PGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYI 305 (764)
T ss_pred cchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 111222233322211 1
Q ss_pred ----------------------------------------------------------eEEEEeccCcHHHHHHHHHhhc
Q 005313 353 ----------------------------------------------------------QTLMYTATWPREVRKIAADLLV 374 (703)
Q Consensus 353 ----------------------------------------------------------q~L~lSAT~p~~v~~l~~~~l~ 374 (703)
++.+||.|...+..++..-|-.
T Consensus 306 V~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l 385 (764)
T PRK12326 306 VRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDL 385 (764)
T ss_pred EECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCC
Confidence 1223333332222222111111
Q ss_pred CceecccccchhhhccccceEEEEEeccchhHHHHHHHH-HhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCC
Q 005313 375 NPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDK 452 (703)
Q Consensus 375 ~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll-~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~ 452 (703)
+-+ .+..... ........ .......+|...+.+-+ +.+..+.++||.|.+.+..+.++..|.+ .++..+|++.-
T Consensus 386 ~Vv--~IPtnkp-~~R~d~~d-~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~ 461 (764)
T PRK12326 386 GVS--VIPPNKP-NIREDEAD-RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKN 461 (764)
T ss_pred cEE--ECCCCCC-ceeecCCC-ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCc
Confidence 101 1100000 00000111 12233445555554444 4557889999999999999999999985 57888888764
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC----------c-----cEEEEecCCCCHHHHHHHHhccCCCCCccE
Q 005313 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD----------I-----RVVVNYDFPTGVEDYVHRIGRTGRAGATGV 517 (703)
Q Consensus 453 ~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~----------v-----~~VI~~d~P~s~~~yiQriGRagR~G~~g~ 517 (703)
...|-+.|-++=+. -.|.|||++++||.||.= | =|||-...+.|...-.|..||+||.|.+|.
T Consensus 462 ~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 462 DAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred hHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 44333333332222 349999999999999962 2 279988899999999999999999999999
Q ss_pred EEEEEecCC
Q 005313 518 AYTFFGDQD 526 (703)
Q Consensus 518 ~i~~~~~~d 526 (703)
+..|++-.|
T Consensus 540 s~f~lSleD 548 (764)
T PRK12326 540 SVFFVSLED 548 (764)
T ss_pred eeEEEEcch
Confidence 999987555
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.79 E-value=3.3e-17 Score=194.59 Aligned_cols=324 Identities=19% Similarity=0.224 Sum_probs=197.5
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH-HHHHHHhc
Q 005313 196 SPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI-QDEAVKFG 270 (703)
Q Consensus 196 ~p~piQ~~ai~~il----~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~-~~~~~k~~ 270 (703)
+.++-|.+....+. .++.+++.|+||+|||++|++|++.... +.++||++||++|++|+ .+.+..+.
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~--------~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD--------QRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC--------CCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 68999999665543 4577889999999999999999877531 35899999999999999 46676666
Q ss_pred CCCCceEEEeeCCCCCC-----------------------------------------------chhhh-----------
Q 005313 271 KSSRISCTCLYGGAPKG-----------------------------------------------PQLKD----------- 292 (703)
Q Consensus 271 ~~~~i~v~~~~gg~~~~-----------------------------------------------~~~~~----------- 292 (703)
+..++.+.++.|+...- ..|..
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 65666665555443210 00111
Q ss_pred -------------hcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC-----C-------hH--------
Q 005313 293 -------------IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-----F-------EP-------- 339 (703)
Q Consensus 293 -------------l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g-----f-------~~-------- 339 (703)
-...++|||+++..|+..+.... .+..+++|||||||++.+.. . ..
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSG 475 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHH
Confidence 01236799999998887664433 36789999999999865311 0 00
Q ss_pred ------------------------------------------HHHHH--------HHH----------------------
Q 005313 340 ------------------------------------------QIRKI--------VKE---------------------- 347 (703)
Q Consensus 340 ------------------------------------------~i~~i--------l~~---------------------- 347 (703)
.+..+ ...
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~ 555 (820)
T PRK07246 476 PLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTY 555 (820)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeE
Confidence 00000 000
Q ss_pred --------------cCCCceEEEEeccCcH-HHHHHHHHhhcCc--eecccccchhhhccccceEEEEEe----c-----
Q 005313 348 --------------VPARRQTLMYTATWPR-EVRKIAADLLVNP--VQVNIGNVDELAANKAITQHIEVL----A----- 401 (703)
Q Consensus 348 --------------l~~~~q~L~lSAT~p~-~v~~l~~~~l~~~--~~i~i~~~~~~~~~~~i~~~~~~~----~----- 401 (703)
++....+|++|||++- ....+ .+.+.-. ....+. .. .. .+...++ .
T Consensus 556 l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~-~~~lGl~~~~~~~~~-~~-~~-----~~~~~~i~~~~p~~~~~ 627 (820)
T PRK07246 556 LNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSL-ADLLGFEEYLFHKIE-KD-KK-----QDQLVVVDQDMPLVTET 627 (820)
T ss_pred EEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcH-HHHcCCCccceecCC-CC-hH-----HccEEEeCCCCCCCCCC
Confidence 0011356788888741 11122 2222211 111110 00 00 0111111 1
Q ss_pred -cchhHHHHHHHHHh-cCCCCeEEEEcCCHHHHHHHHHHHhcC-CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 005313 402 -PMDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVA 478 (703)
Q Consensus 402 -~~~k~~~L~~ll~~-~~~~~kvLVF~~s~~~a~~la~~L~~~-~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~ 478 (703)
...-.+.+.+.+.. ...++++||+++|.+..+.+++.|... +.+ ...+... .+..++++|++++-.||++|..+
T Consensus 628 ~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sF 704 (820)
T PRK07246 628 SDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSF 704 (820)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchh
Confidence 11112223332221 234579999999999999999888642 333 3334222 35668999999888999999999
Q ss_pred cccCCCCC--ccEEEEecCCCC------------------------------HHHHHHHHhccCCCCCccEEEEEEecC-
Q 005313 479 ARGLDIKD--IRVVVNYDFPTG------------------------------VEDYVHRIGRTGRAGATGVAYTFFGDQ- 525 (703)
Q Consensus 479 ~~GIDIp~--v~~VI~~d~P~s------------------------------~~~yiQriGRagR~G~~g~~i~~~~~~- 525 (703)
.+|||+|. ...||...+|.. ...+.|.+||.-|...+--++++++..
T Consensus 705 wEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~ 784 (820)
T PRK07246 705 WEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRI 784 (820)
T ss_pred hCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcc
Confidence 99999973 555777776631 124679999999987655566666654
Q ss_pred -ChHHHHHHHHHHHh
Q 005313 526 -DSRYASDLIKLLEG 539 (703)
Q Consensus 526 -d~~~~~~l~~~l~~ 539 (703)
...+-+.+++.|..
T Consensus 785 ~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 785 LTKSYGKQILASLAE 799 (820)
T ss_pred cccHHHHHHHHhCCC
Confidence 44566777777654
No 130
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=2.1e-17 Score=180.61 Aligned_cols=306 Identities=18% Similarity=0.249 Sum_probs=195.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hcCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK-FGKSS 273 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k-~~~~~ 273 (703)
......+.+.+..|..++-+||+++||||||.. +|-+.+..-... ...+-+.-|.|.-|..++..+.. ....+
T Consensus 355 LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~QyL~edGY~~----~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 355 LPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQYLYEDGYAD----NGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred cchHHHHHHHHHHHhhCcEEEEEecCCCCchhh--hHHHHHhccccc----CCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 345667777888888888899999999999973 343333222211 22555666888887776655433 32222
Q ss_pred CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccc-cccCCChHHHHHHHHHcCCCc
Q 005313 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-MLDMGFEPQIRKIVKEVPARR 352 (703)
Q Consensus 274 ~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~-ml~~gf~~~i~~il~~l~~~~ 352 (703)
+ +-+|..-..+... .....|-++|-+.|+.-... .-.|.++++||+||||. -++.+..--+.+.+-.-..+.
T Consensus 429 G----~~VGYsIRFEdvT--~~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 429 G----DTVGYSIRFEDVT--SEDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred c----cccceEEEeeecC--CCceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 2 1111111111100 11256889999999765443 33578899999999995 233222222222232334578
Q ss_pred eEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHh------cCCCCeEEEEc
Q 005313 353 QTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS------QEPGSKIIVFC 426 (703)
Q Consensus 353 q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~------~~~~~kvLVF~ 426 (703)
++|.+|||+.. +-+..|+.+...++|.... .+..+ +.......+.+...++. ....+.+|||.
T Consensus 502 KliVtSATm~a---~kf~nfFgn~p~f~IpGRT-------yPV~~-~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfm 570 (1042)
T KOG0924|consen 502 KLIVTSATMDA---QKFSNFFGNCPQFTIPGRT-------YPVEI-MYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFM 570 (1042)
T ss_pred eEEEeeccccH---HHHHHHhCCCceeeecCCc-------cceEE-EeccCchHHHHHHHHhhheEeeccCCCCCEEEec
Confidence 89999999853 3345566644444443211 11111 11112222333333332 12346899999
Q ss_pred CCHHHHHHHHHHHhc-----------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecC
Q 005313 427 STKKMCDQLARNLTR-----------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF 495 (703)
Q Consensus 427 ~s~~~a~~la~~L~~-----------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~ 495 (703)
...+.++..+..|.+ .+.+..+++.++.+.+.++++....|..++||||++++..|.||++.+||+.++
T Consensus 571 tGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 571 TGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred CCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 887766555554432 356888999999999999999888999999999999999999999999997553
Q ss_pred ------------------CCCHHHHHHHHhccCCCCCccEEEEEEecC
Q 005313 496 ------------------PTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 496 ------------------P~s~~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
|.|...--||.||+||.+ +|.||-+|++.
T Consensus 651 ~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 651 CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 567788889999999995 69999999763
No 131
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=1.7e-15 Score=182.98 Aligned_cols=122 Identities=17% Similarity=0.242 Sum_probs=91.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhcCCc---eeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC--ccEEEE
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTRQFG---AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD--IRVVVN 492 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~~~~---~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~--v~~VI~ 492 (703)
.++++|||+++.+..+.+++.|..... ...+.-+++...|..+++.|++++-.||++|..+.+|||+|+ +.+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 346899999999999999999875322 223332444456888999999988899999999999999996 578998
Q ss_pred ecCCCC------------------------------HHHHHHHHhccCCCCCccEEEEEEecC--ChHHHHHHHHHHHh
Q 005313 493 YDFPTG------------------------------VEDYVHRIGRTGRAGATGVAYTFFGDQ--DSRYASDLIKLLEG 539 (703)
Q Consensus 493 ~d~P~s------------------------------~~~yiQriGRagR~G~~g~~i~~~~~~--d~~~~~~l~~~l~~ 539 (703)
..+|.. ...+.|.+||.-|..++.-++++++.. ...+-+.+++.|..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP~ 909 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLPT 909 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCCC
Confidence 887741 123469999999998765566666654 45566777777653
No 132
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.73 E-value=3.6e-15 Score=170.35 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhcCCce-eEecCCCCHHHHHHHHHHHhc----CCCcEEEEcccccccCCC--------
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTRQFGA-AAIHGDKSQSERDYVLNQFRA----GRSPVLVATDVAARGLDI-------- 484 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~~~~~-~~lhg~~~~~eR~~vl~~F~~----G~~~ILVaTdv~~~GIDI-------- 484 (703)
.++.+||.+.+.+.++.+++.|...+.. ..+.|+.+ .+..++++|+. +.-.||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 3468999999999999999999865533 33445432 45668888887 478999999999999999
Q ss_pred C--CccEEEEecCCCCH-------------------------HHHHHHHhccCCCCCc--cEEEEEEecC
Q 005313 485 K--DIRVVVNYDFPTGV-------------------------EDYVHRIGRTGRAGAT--GVAYTFFGDQ 525 (703)
Q Consensus 485 p--~v~~VI~~d~P~s~-------------------------~~yiQriGRagR~G~~--g~~i~~~~~~ 525 (703)
| .+++||+..+|..+ ..+.|-+||.-|...+ --++++++..
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3 38889998887421 2456999999998776 4455555544
No 133
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2.7e-16 Score=181.91 Aligned_cols=315 Identities=19% Similarity=0.199 Sum_probs=201.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..++++|.-.--.+ ...-|+.+.||.|||+++.+|++..... |..|-||+|+.-||.|-++++..+...++
T Consensus 81 m~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~-------G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 81 MRHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS-------GKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred CCcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 36777777654444 4566888999999999999998876655 56899999999999999999999999999
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhcc------ccccCcccEEEecccccc-cCC----------
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRML-DMG---------- 336 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~~------~~l~~~~~IViDEaH~ml-~~g---------- 336 (703)
+.+.++.+.....+....+ .++|+++|..-| .|+|..+. .....+.++||||+|.+| |..
T Consensus 152 l~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 9999998876543332222 389999999886 45554321 123678999999999765 110
Q ss_pred -----ChHHHHHHHHHcCC-------------------Cce---------------------------------------
Q 005313 337 -----FEPQIRKIVKEVPA-------------------RRQ--------------------------------------- 353 (703)
Q Consensus 337 -----f~~~i~~il~~l~~-------------------~~q--------------------------------------- 353 (703)
....+..++..+.. +.+
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 11112222222210 011
Q ss_pred -----------------------------------------------------------------------------EEE
Q 005313 354 -----------------------------------------------------------------------------TLM 356 (703)
Q Consensus 354 -----------------------------------------------------------------------------~L~ 356 (703)
+.+
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 111
Q ss_pred EeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHH-HhcCCCCeEEEEcCCHHHHHHH
Q 005313 357 YTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQL 435 (703)
Q Consensus 357 lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll-~~~~~~~kvLVF~~s~~~a~~l 435 (703)
||.|...+..++..-|-.+-+.+. . ........... ..+....+|...+.+-+ ..+..+.++||-|.|.+..+.|
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IP--T-nkP~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~l 465 (913)
T PRK13103 390 MTGTADTEAFEFRQIYGLDVVVIP--P-NKPLARKDFND-LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHM 465 (913)
T ss_pred CCCCCHHHHHHHHHHhCCCEEECC--C-CCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHH
Confidence 222211111111111100000000 0 00000000111 12334445665555444 4457789999999999999999
Q ss_pred HHHHhc-CCceeEecCCCCHHHHHHHHHHHhcC-CCcEEEEcccccccCCCC----------------------------
Q 005313 436 ARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAG-RSPVLVATDVAARGLDIK---------------------------- 485 (703)
Q Consensus 436 a~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G-~~~ILVaTdv~~~GIDIp---------------------------- 485 (703)
++.|.+ .++..+|+......|-+-+-+ .| .-.|.|||++++||.||.
T Consensus 466 s~~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~ 542 (913)
T PRK13103 466 SNLLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQ 542 (913)
T ss_pred HHHHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 999984 666666666544333333332 34 335999999999999995
Q ss_pred ----Ccc-----EEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 486 ----DIR-----VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 486 ----~v~-----~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
.|. |||-...+.|...-.|..||+||.|.+|.+-.|++-.|.
T Consensus 543 ~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 543 KRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred hHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 122 688888999999999999999999999999999876553
No 134
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=1.3e-16 Score=171.35 Aligned_cols=325 Identities=12% Similarity=0.100 Sum_probs=214.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
--...+.+|.++|..+.+|+++++.-.|.+||.+++.+.++..+..+... ..|++.|+.++++.....+.-....
T Consensus 283 ~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s-----~~~~~~~~~~~~~~~~~~~~V~~~~ 357 (1034)
T KOG4150|consen 283 TGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT-----NSLLPSEMVEHLRNGSKGQVVHVEV 357 (1034)
T ss_pred cccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc-----ceecchhHHHHhhccCCceEEEEEe
Confidence 34577899999999999999999999999999999998888877765443 6899999999988654432211111
Q ss_pred C---CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcccc----ccCcccEEEecccccccCCCh----HHH
Q 005313 273 S---RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS----LNQVSYLVLDEADRMLDMGFE----PQI 341 (703)
Q Consensus 273 ~---~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~----l~~~~~IViDEaH~ml~~gf~----~~i 341 (703)
. .--++..+.+.........++.+..++++.+........-+... +-...++++||+|..+-. |. .++
T Consensus 358 I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~ 436 (1034)
T KOG4150|consen 358 IKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQL 436 (1034)
T ss_pred hhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHH
Confidence 0 01123333443333333345557899999999887655433332 334578999999965432 22 233
Q ss_pred HHHHHHc-----CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEec--c---chhHHHHHH
Q 005313 342 RKIVKEV-----PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA--P---MDKHRRLEQ 411 (703)
Q Consensus 342 ~~il~~l-----~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~--~---~~k~~~L~~ 411 (703)
+.++..+ ..+.|++-.+||+...++....-+-.+.+.+...+-........+.+.-.... . ..+......
T Consensus 437 R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~ 516 (1034)
T KOG4150|consen 437 RALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSH 516 (1034)
T ss_pred HHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHH
Confidence 3433332 34678999999987665543332222222221111111111111111100011 0 112222222
Q ss_pred HHHh-cCCCCeEEEEcCCHHHHHHHHHHHhcCC---------ceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 005313 412 ILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQF---------GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARG 481 (703)
Q Consensus 412 ll~~-~~~~~kvLVF~~s~~~a~~la~~L~~~~---------~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~G 481 (703)
++.+ ...+-++|-||..++.|+.+....++-+ .+..+.|+...++|.++..++--|++.-+|+|++++-|
T Consensus 517 ~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELG 596 (1034)
T KOG4150|consen 517 LFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELG 596 (1034)
T ss_pred HHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhc
Confidence 2222 2345689999999999998876554321 24567899999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEe
Q 005313 482 LDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFG 523 (703)
Q Consensus 482 IDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~ 523 (703)
|||..++.|++.++|.|...+.|..||+||..++..++.+..
T Consensus 597 IDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 597 IDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred cccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 999999999999999999999999999999998877665543
No 135
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.70 E-value=7.2e-16 Score=169.05 Aligned_cols=149 Identities=19% Similarity=0.293 Sum_probs=120.5
Q ss_pred chhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCc-EEEEccccc
Q 005313 403 MDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSP-VLVATDVAA 479 (703)
Q Consensus 403 ~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~-ILVaTdv~~ 479 (703)
..|+..|..+|..+ ..++++|+|+...++++.+.++|. +++....+.|.....+|..++++|+..++- +|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 34556677777655 467899999999999999999998 689999999999999999999999976654 588999999
Q ss_pred ccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHHHHHHHcCC
Q 005313 480 RGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGG 556 (703)
Q Consensus 480 ~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L~~la~r~~ 556 (703)
-|||+...++||+||..|+++.-.|..-|++|.|+...+.+|-.-....+.++++.- +.| ..++++|.+.|+
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~r---A~q--K~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLER---ANQ--KDEVQQMVMHGN 1178 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHH---hhh--HHHHHHHHHcCC
Confidence 999999999999999999999999999999999988776666554444454444433 332 256677776654
No 136
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.70 E-value=2.5e-15 Score=171.67 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCC--CcEEEEccccc
Q 005313 404 DKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGR--SPVLVATDVAA 479 (703)
Q Consensus 404 ~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~--~~ILVaTdv~~ 479 (703)
.|++.|.-+|+.+ ..++++|||+...++.+.|..+|+ .++....|.|...-++|...++.|+... ..+|++|....
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 4666666666654 567899999999999999999998 4677888999999999999999998654 35688999999
Q ss_pred ccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHH
Q 005313 480 RGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKL 536 (703)
Q Consensus 480 ~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~ 536 (703)
.|||+.+.++||+||..||+..-.|.--|+.|.|+...+.+|-.-.+..+.+.|++-
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkk 1396 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKK 1396 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhh
Confidence 999999999999999999999999999999999998888888777777776666543
No 137
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=4.9e-16 Score=172.70 Aligned_cols=307 Identities=22% Similarity=0.299 Sum_probs=183.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCC-CCCCCEEEEEcCcHHHHHHHHHHHH-HhcC-CCCceE
Q 005313 201 QAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND-PRLGPTVLVLSPTRELATQIQDEAV-KFGK-SSRISC 277 (703)
Q Consensus 201 Q~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~-~~~g~~vLIl~PtreLa~Q~~~~~~-k~~~-~~~i~v 277 (703)
-++++.+|-.+.-+|||++||||||. .+|-|.+-...... ...+.-+=|.-|+|.-|.-+.+... +++. ...+..
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 34555666666678889999999996 56655553322221 1112356777898876665544332 2322 111223
Q ss_pred EEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccc-cC----CChHHHHHHHHHcCC--
Q 005313 278 TCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML-DM----GFEPQIRKIVKEVPA-- 350 (703)
Q Consensus 278 ~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml-~~----gf~~~i~~il~~l~~-- 350 (703)
..-+.++.. ....|.++|-+.|+.-+.. .+.|..++.|||||||.=. +. |....+..|-..+..
T Consensus 339 qIRfd~ti~--------e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 339 QIRFDGTIG--------EDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEEeccccC--------CCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333321 2268999999999987775 4568899999999999521 10 111222222222222
Q ss_pred ----CceEEEEeccCcHHHHHHHHHhhcC-ceecccccchhhhccccceEEEEEeccchh-HHHHHHHHHh--cCCCCeE
Q 005313 351 ----RRQTLMYTATWPREVRKIAADLLVN-PVQVNIGNVDELAANKAITQHIEVLAPMDK-HRRLEQILRS--QEPGSKI 422 (703)
Q Consensus 351 ----~~q~L~lSAT~p~~v~~l~~~~l~~-~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k-~~~L~~ll~~--~~~~~kv 422 (703)
..++|+||||+--.....-+.++.. |..+.+. +....+..|+....+.+- .+.....++- .-+.+.+
T Consensus 410 ~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVd-----ARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~I 484 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVD-----ARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGI 484 (1172)
T ss_pred cccCceeEEEEeeeEEecccccCceecCCCCceeeee-----cccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcE
Confidence 4579999999753222111222222 1112221 112223344443333322 2223333322 2345689
Q ss_pred EEEcCCHHHHHHHHHHHhcCC-----------------------------------------------------------
Q 005313 423 IVFCSTKKMCDQLARNLTRQF----------------------------------------------------------- 443 (703)
Q Consensus 423 LVF~~s~~~a~~la~~L~~~~----------------------------------------------------------- 443 (703)
|||+....++++|++.|++.|
T Consensus 485 LVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ 564 (1172)
T KOG0926|consen 485 LVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASL 564 (1172)
T ss_pred EEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhh
Confidence 999999999999999986532
Q ss_pred -----------------------------------------ceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccC
Q 005313 444 -----------------------------------------GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGL 482 (703)
Q Consensus 444 -----------------------------------------~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GI 482 (703)
-|..|++-++.+++.++++.-..|..-++|||++++..|
T Consensus 565 raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSL 644 (1172)
T KOG0926|consen 565 RAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSL 644 (1172)
T ss_pred hhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccc
Confidence 133345555556666666666667777899999999999
Q ss_pred CCCCccEEEEecC--------CC----------CHHHHHHHHhccCCCCCccEEEEEEec
Q 005313 483 DIKDIRVVVNYDF--------PT----------GVEDYVHRIGRTGRAGATGVAYTFFGD 524 (703)
Q Consensus 483 DIp~v~~VI~~d~--------P~----------s~~~yiQriGRagR~G~~g~~i~~~~~ 524 (703)
.||++.+||+.+. -. |...--||.||+||.| .|.||-||+.
T Consensus 645 TIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 645 TIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred ccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 9999999997543 22 3445569999999996 5999999864
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.69 E-value=3.3e-16 Score=144.55 Aligned_cols=118 Identities=47% Similarity=0.802 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHhcC-CCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 005313 404 DKHRRLEQILRSQE-PGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARG 481 (703)
Q Consensus 404 ~k~~~L~~ll~~~~-~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~G 481 (703)
.|...+..++.... .+.++||||+++..++.+++.|.+ .+.+..+|++++..+|..+++.|+++...|||+|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 67777777777653 567999999999999999999975 6789999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEE
Q 005313 482 LDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTF 521 (703)
Q Consensus 482 IDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~ 521 (703)
+|+|.+++||+++.+++..+|+|++||++|.|+.+.+++|
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998888764
No 139
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=7e-15 Score=168.65 Aligned_cols=310 Identities=21% Similarity=0.213 Sum_probs=201.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.|+++|.-.--.+..| -|+.+.||-|||+++.+|+...... |..|-||+...-||..=.+++..+...+++
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~-------GkgVhVVTvNdYLA~RDae~mg~vy~fLGL 148 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT-------GKGVIVSTVNEYLAERDAEEMGKVFNFLGL 148 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc-------CCceEEEecchhhhhhhHHHHHHHHHHhCC
Confidence 7888888887666655 4788999999999999988665444 457888888899999888889888888999
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhcc------ccccCcccEEEeccccccc-CC-----------
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRMLD-MG----------- 336 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~~------~~l~~~~~IViDEaH~ml~-~g----------- 336 (703)
.|.++..+..... +...-.|||+++|..-| +|+|..+. .....+.|.||||+|.+|= ..
T Consensus 149 svG~i~~~~~~~~--rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~ 226 (925)
T PRK12903 149 SVGINKANMDPNL--KREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQS 226 (925)
T ss_pred ceeeeCCCCChHH--HHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCc
Confidence 9988876544332 22333599999999776 45555332 2245688999999997651 10
Q ss_pred ----ChHHHHHHHHHcCC-------CceEE--------------------------------------------------
Q 005313 337 ----FEPQIRKIVKEVPA-------RRQTL-------------------------------------------------- 355 (703)
Q Consensus 337 ----f~~~i~~il~~l~~-------~~q~L-------------------------------------------------- 355 (703)
+...+..++..+.. ..+.+
T Consensus 227 ~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~ 306 (925)
T PRK12903 227 NDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVR 306 (925)
T ss_pred cchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 11122222332221 11112
Q ss_pred -----------------------------------------------------------EEeccCcHHHHHHHHHhhcCc
Q 005313 356 -----------------------------------------------------------MYTATWPREVRKIAADLLVNP 376 (703)
Q Consensus 356 -----------------------------------------------------------~lSAT~p~~v~~l~~~~l~~~ 376 (703)
+||.|.-.+..++..-|-.+-
T Consensus 307 dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~V 386 (925)
T PRK12903 307 DGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRV 386 (925)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCE
Confidence 222222111111111111110
Q ss_pred eecccccchhhhccccce----EEEEEeccchhHHHHHHHH-HhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecC
Q 005313 377 VQVNIGNVDELAANKAIT----QHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHG 450 (703)
Q Consensus 377 ~~i~i~~~~~~~~~~~i~----~~~~~~~~~~k~~~L~~ll-~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg 450 (703)
+.+ +.+..+. ....+.....|...+..-+ +.+..+.++||.|.+.+..+.++..|.+ +++..+|+.
T Consensus 387 v~I--------PTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA 458 (925)
T PRK12903 387 NVV--------PTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA 458 (925)
T ss_pred EEC--------CCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc
Confidence 000 0110000 0012334445665555544 4457889999999999999999999984 688888887
Q ss_pred CCCHHHHHHHHHHHhcC-CCcEEEEcccccccCCCCCcc--------EEEEecCCCCHHHHHHHHhccCCCCCccEEEEE
Q 005313 451 DKSQSERDYVLNQFRAG-RSPVLVATDVAARGLDIKDIR--------VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTF 521 (703)
Q Consensus 451 ~~~~~eR~~vl~~F~~G-~~~ILVaTdv~~~GIDIp~v~--------~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~ 521 (703)
.-. +++..+-. +.| .-.|.|||++++||.||.--. |||....+.|...-.|..||+||.|.+|.+..|
T Consensus 459 k~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 459 KQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 633 33332222 345 345999999999999996322 899999999999999999999999999999988
Q ss_pred EecCCh
Q 005313 522 FGDQDS 527 (703)
Q Consensus 522 ~~~~d~ 527 (703)
++-.|.
T Consensus 536 lSLeD~ 541 (925)
T PRK12903 536 ISLDDQ 541 (925)
T ss_pred EecchH
Confidence 876553
No 140
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.68 E-value=5e-16 Score=151.96 Aligned_cols=152 Identities=23% Similarity=0.205 Sum_probs=102.6
Q ss_pred CCcHHHHHHHHHHHc-------CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005313 196 SPTPIQAQSWPIALQ-------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268 (703)
Q Consensus 196 ~p~piQ~~ai~~il~-------grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k 268 (703)
+|+++|.+++..++. .+++++.++||+|||.+++..+..... ++||++|+..|+.|+.+.+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----------KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----------EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----------ceeEecCHHHHHHHHHHHHHH
Confidence 689999999999884 588999999999999987754444332 799999999999999999977
Q ss_pred hcCCCCceEEEe-----------eCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc-----------cccccCcccEEE
Q 005313 269 FGKSSRISCTCL-----------YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-----------RISLNQVSYLVL 326 (703)
Q Consensus 269 ~~~~~~i~v~~~-----------~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~-----------~~~l~~~~~IVi 326 (703)
+........... .................+++++|.+.|....... ......+++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 755422111110 0001111111122345789999999998876532 123456789999
Q ss_pred ecccccccCCChHH-HHHHHHHcCCCceEEEEeccCcH
Q 005313 327 DEADRMLDMGFEPQ-IRKIVKEVPARRQTLMYTATWPR 363 (703)
Q Consensus 327 DEaH~ml~~gf~~~-i~~il~~l~~~~q~L~lSAT~p~ 363 (703)
||||++.. .. +..++. .+...+|+||||+.+
T Consensus 153 DEaH~~~~----~~~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 153 DEAHHYPS----DSSYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp ETGGCTHH----HHHHHHHHH--SSCCEEEEEESS-S-
T ss_pred ehhhhcCC----HHHHHHHHc--CCCCeEEEEEeCccC
Confidence 99999743 33 566666 456679999999863
No 141
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=2.6e-16 Score=179.09 Aligned_cols=328 Identities=17% Similarity=0.232 Sum_probs=206.5
Q ss_pred CCcHHHHHHHHHHHc----CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 196 SPTPIQAQSWPIALQ----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 196 ~p~piQ~~ai~~il~----grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
++.+||...+.++.. +-+-|+..+||.|||+.. |.++.++....... | ..|||||+-.|. .|..+|.+|..
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~~~--G-P~LvivPlstL~-NW~~Ef~kWaP 468 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQMQ--G-PFLIIVPLSTLV-NWSSEFPKWAP 468 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcccC--C-CeEEeccccccC-Cchhhcccccc
Confidence 688999999988764 236788999999999764 44455555433332 3 579999997775 46777888765
Q ss_pred CCCceEEEeeCCCCCCchhh--hhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcC
Q 005313 272 SSRISCTCLYGGAPKGPQLK--DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 349 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~--~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~ 349 (703)
. +......|....+..+. .....++|+++|++.+.. ....+..-++.|+||||.|+|.+.. ..+...+...-
T Consensus 469 S--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y 542 (1157)
T KOG0386|consen 469 S--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHY 542 (1157)
T ss_pred c--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhhccc
Confidence 4 44433334332221111 122359999999998865 2223333457899999999986532 11111111100
Q ss_pred CCceEEEEeccC--------------------------------------------------------------------
Q 005313 350 ARRQTLMYTATW-------------------------------------------------------------------- 361 (703)
Q Consensus 350 ~~~q~L~lSAT~-------------------------------------------------------------------- 361 (703)
.....|++|.|+
T Consensus 543 ~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlK 622 (1157)
T KOG0386|consen 543 RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLK 622 (1157)
T ss_pred cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhh
Confidence 111123333332
Q ss_pred -------cHHHHHHHHHh-----------hcCceeccccc----------------chhhhccccceEEE----------
Q 005313 362 -------PREVRKIAADL-----------LVNPVQVNIGN----------------VDELAANKAITQHI---------- 397 (703)
Q Consensus 362 -------p~~v~~l~~~~-----------l~~~~~i~i~~----------------~~~~~~~~~i~~~~---------- 397 (703)
|..++.+++.- +.+.-.+.+.. ...+..+..+.+++
T Consensus 623 keVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 623 KEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 11111110000 00000000000 00000000000000
Q ss_pred -EEeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCC---cE
Q 005313 398 -EVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRS---PV 471 (703)
Q Consensus 398 -~~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~---~I 471 (703)
..+....|++.|..+|-.+ ..++++|.||......+.|..+|. +.+....+.|....++|...++.|..-.. .+
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 1122234666666666544 457899999999999999999998 78889999999999999999999986554 47
Q ss_pred EEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 472 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 472 LVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
|++|.....|+|+.-++.||.||.-|++..+.|+.-|+.|.|+...+-++....-..+.+.++
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il 845 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKIL 845 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHH
Confidence 889999999999999999999999999999999999999999988888877655444444443
No 142
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.67 E-value=1.4e-15 Score=140.63 Aligned_cols=144 Identities=44% Similarity=0.566 Sum_probs=109.9
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 291 (703)
+++++.++||+|||.+++..+....... ...++||++|++.|+.|+.+.+..+... .+.+..+.+.........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-----~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-----KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEK 74 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-----cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHH
Confidence 4689999999999998887777665541 2358999999999999999999888764 566666666655555444
Q ss_pred hhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccC
Q 005313 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 361 (703)
Q Consensus 292 ~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~ 361 (703)
......+|+|+|++.+...+.........+++|||||+|.+....+...............+++++|||+
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4456789999999999887776555566789999999999876654444333444556778899999996
No 143
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=2.8e-15 Score=159.19 Aligned_cols=326 Identities=16% Similarity=0.202 Sum_probs=199.2
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEE
Q 005313 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl 252 (703)
+..|...++.+...+.+++..-...+.++.+-+..+.+++-++++++||+|||...--..+...... ...|...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~------~~~v~CT 97 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH------LTGVACT 97 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh------ccceeec
Confidence 6778888889988888887666666777888888888888999999999999974222222222221 1246667
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 253 ~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
-|.|.-|.++......- .++....-+|..-..+.... ...-+-+||-++|+.-.... -.+..+.+||+||||.=
T Consensus 98 Qprrvaamsva~RVadE---MDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahER 171 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVADE---MDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHER 171 (699)
T ss_pred CchHHHHHHHHHHHHHH---hccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhh
Confidence 78888777765544322 22222222222211111000 00112245555554433322 23778999999999951
Q ss_pred -ccCC-ChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHH-H
Q 005313 333 -LDMG-FEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR-L 409 (703)
Q Consensus 333 -l~~g-f~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~-L 409 (703)
+..+ ..-.++.++.. .++.++|.+|||+. ..-+..|+.+...+.+.... .+...+..-.+.+..+. +
T Consensus 172 tlATDiLmGllk~v~~~-rpdLk~vvmSatl~---a~Kfq~yf~n~Pll~vpg~~------PvEi~Yt~e~erDylEaai 241 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRN-RPDLKLVVMSATLD---AEKFQRYFGNAPLLAVPGTH------PVEIFYTPEPERDYLEAAI 241 (699)
T ss_pred hHHHHHHHHHHHHHHhh-CCCceEEEeecccc---hHHHHHHhCCCCeeecCCCC------ceEEEecCCCChhHHHHHH
Confidence 1111 11223333333 35889999999974 33455666666555554311 11111111112222222 2
Q ss_pred HHHHH--hcCCCCeEEEEcCCHHHHHHHHHHHhcC----------CceeEecCCCCHHHHHHHHHHHhc---C--CCcEE
Q 005313 410 EQILR--SQEPGSKIIVFCSTKKMCDQLARNLTRQ----------FGAAAIHGDKSQSERDYVLNQFRA---G--RSPVL 472 (703)
Q Consensus 410 ~~ll~--~~~~~~kvLVF~~s~~~a~~la~~L~~~----------~~~~~lhg~~~~~eR~~vl~~F~~---G--~~~IL 472 (703)
..+++ .....+-+|||....++++..++.+.++ +.+..+| +++...+++.... | ..+|+
T Consensus 242 rtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvV 317 (699)
T KOG0925|consen 242 RTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVV 317 (699)
T ss_pred HHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEE
Confidence 22222 1233568999999999999999888742 4577777 3344444433321 2 24699
Q ss_pred EEcccccccCCCCCccEEEEecC------------------CCCHHHHHHHHhccCCCCCccEEEEEEecC
Q 005313 473 VATDVAARGLDIKDIRVVVNYDF------------------PTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 473 VaTdv~~~GIDIp~v~~VI~~d~------------------P~s~~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
|+|.+++..+.|+.+.+||+-++ |.|..+-.||.||+||. .+|+|+.++++.
T Consensus 318 vstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 318 VSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999999999999997553 56788899999999998 789999999754
No 144
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=5.5e-15 Score=159.48 Aligned_cols=265 Identities=22% Similarity=0.250 Sum_probs=182.7
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhh
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l 293 (703)
++-++||.||||.-+ ++++..+ ...++.-|.|-||.++++.+.+. +|.|.+++|.......-.
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~a-------ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~-- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKSA-------KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN-- 256 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhhh-------ccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--
Confidence 445699999999754 4555542 25699999999999999988775 466777777543321111
Q ss_pred cCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHH-HHHcCCCceEEEEeccCcHHHHHHHHHh
Q 005313 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKI-VKEVPARRQTLMYTATWPREVRKIAADL 372 (703)
Q Consensus 294 ~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~i-l~~l~~~~q~L~lSAT~p~~v~~l~~~~ 372 (703)
...+.++-||.++.. + -..+++.||||+++|.|......+.+. +....+...+.+ .+.+.++++++
T Consensus 257 ~~~a~hvScTVEM~s-------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~~i 323 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMVS-------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVRKI 323 (700)
T ss_pred CCcccceEEEEEEee-------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHHHH
Confidence 122678888866541 1 235789999999998876655444433 322222332222 22344455444
Q ss_pred hcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc--CCceeEecC
Q 005313 373 LVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHG 450 (703)
Q Consensus 373 l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~--~~~~~~lhg 450 (703)
+.. .-.......++.+.+....+.+..-+....++.-+ .|-+++.+..+...|++ ...+++|+|
T Consensus 324 ~k~------------TGd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCv--V~FSkk~I~~~k~kIE~~g~~k~aVIYG 389 (700)
T KOG0953|consen 324 LKM------------TGDDVEVREYERLSPLVVEETALGSLSNLKPGDCV--VAFSKKDIFTVKKKIEKAGNHKCAVIYG 389 (700)
T ss_pred Hhh------------cCCeeEEEeecccCcceehhhhhhhhccCCCCCeE--EEeehhhHHHHHHHHHHhcCcceEEEec
Confidence 321 11112233455555554455666777777776654 46688888888888875 345999999
Q ss_pred CCCHHHHHHHHHHHhc--CCCcEEEEcccccccCCCCCccEEEEecCC---------CCHHHHHHHHhccCCCCC---cc
Q 005313 451 DKSQSERDYVLNQFRA--GRSPVLVATDVAARGLDIKDIRVVVNYDFP---------TGVEDYVHRIGRTGRAGA---TG 516 (703)
Q Consensus 451 ~~~~~eR~~vl~~F~~--G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P---------~s~~~yiQriGRagR~G~---~g 516 (703)
+++++.|..-...|++ ++++||||||++++|+|+ +++.||++++- ....+..|..||+||.|. .|
T Consensus 390 sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G 468 (700)
T KOG0953|consen 390 SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQG 468 (700)
T ss_pred CCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCc
Confidence 9999999999999987 899999999999999999 89999998874 367789999999999873 57
Q ss_pred EEEEEEe
Q 005313 517 VAYTFFG 523 (703)
Q Consensus 517 ~~i~~~~ 523 (703)
.+.+|..
T Consensus 469 ~vTtl~~ 475 (700)
T KOG0953|consen 469 EVTTLHS 475 (700)
T ss_pred eEEEeeH
Confidence 7777653
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.63 E-value=2.1e-14 Score=165.68 Aligned_cols=127 Identities=22% Similarity=0.240 Sum_probs=95.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.|+++|.-..-.+ .+..|+.+.||.|||+++.+|+...... |..|-||+++..||.+-++++..+...+++
T Consensus 76 r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~-------G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 76 RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT-------GKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc-------CCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 5777777765443 4678899999999999999998655443 557999999999999999999999999999
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhcc------ccccCcccEEEecccccc
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRML 333 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~~------~~l~~~~~IViDEaH~ml 333 (703)
.+.++.++.+... +...-.|||+++|...| .|+|..+. .....+.++||||+|.++
T Consensus 147 svg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 TVGLIQEGMSSEE--RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred ceeeeCCCCChHH--HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9998877655433 23333489999999655 34444321 124568899999999664
No 146
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.61 E-value=3.5e-14 Score=156.62 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHhc--CCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHh--cCCCcE-EEEccc
Q 005313 404 DKHRRLEQILRSQ--EPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFR--AGRSPV-LVATDV 477 (703)
Q Consensus 404 ~k~~~L~~ll~~~--~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~--~G~~~I-LVaTdv 477 (703)
.|...++++++.. ....+++|..........+...|.+ .+....+||.....+|..+++.|. +|..+| |++-.+
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 3455555555443 4457888888888888888888874 567788999999999999999996 344455 556677
Q ss_pred ccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHH
Q 005313 478 AARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKL 536 (703)
Q Consensus 478 ~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~ 536 (703)
.+.|||+-..+|+|.+|+-|++.--.|..-|..|.|++..++++-........+++..+
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~L 867 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSL 867 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHH
Confidence 89999999999999999999999999999999999999988887655555555554444
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.59 E-value=3.8e-15 Score=125.53 Aligned_cols=73 Identities=45% Similarity=0.770 Sum_probs=70.9
Q ss_pred cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCC
Q 005313 441 RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAG 513 (703)
Q Consensus 441 ~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G 513 (703)
..+.+..+|+++++.+|..+++.|++++..|||||+++++|||+|.+++||++++|++..+|.|++||++|.|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999986
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=4.1e-14 Score=163.84 Aligned_cols=312 Identities=19% Similarity=0.258 Sum_probs=208.4
Q ss_pred CCcHHHHHHHHHHHcCC-CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHH-HHHhcCCC
Q 005313 196 SPTPIQAQSWPIALQSR-DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDE-AVKFGKSS 273 (703)
Q Consensus 196 ~p~piQ~~ai~~il~gr-dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~-~~k~~~~~ 273 (703)
...++|.++++.+.+.+ ++++.+|+|||||.++-++++. +....++++++|.-+.+..++.. -++|.+..
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--------CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 34789999999988764 6777899999999988776544 12234899999999998876654 45677778
Q ss_pred CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC---C--hHHHHHHHHHc
Q 005313 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG---F--EPQIRKIVKEV 348 (703)
Q Consensus 274 ~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g---f--~~~i~~il~~l 348 (703)
+..++.+.|...... .+....+|+|+||+++-.+ . ..+.+++.|.||+|.+.... + .-.++.|..++
T Consensus 1215 G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~ 1286 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQL 1286 (1674)
T ss_pred CceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHH
Confidence 888888877765432 2333469999999999554 2 57789999999999765321 0 01266677777
Q ss_pred CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhH--------HHHHHHHHhcCCCC
Q 005313 349 PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKH--------RRLEQILRSQEPGS 420 (703)
Q Consensus 349 ~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~--------~~L~~ll~~~~~~~ 420 (703)
-++.+++.+|..+.. ..+++ .+.....+++.. ......+.-++..+....-. ..+..+.+.....+
T Consensus 1287 ~k~ir~v~ls~~lan-a~d~i--g~s~~~v~Nf~p---~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k 1360 (1674)
T KOG0951|consen 1287 EKKIRVVALSSSLAN-ARDLI--GASSSGVFNFSP---SVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRK 1360 (1674)
T ss_pred HhheeEEEeehhhcc-chhhc--cccccceeecCc---ccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCC
Confidence 788889999887643 22221 111111122211 11111222223222221111 11333444455678
Q ss_pred eEEEEcCCHHHHHHHHHHHh-----------------------cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 005313 421 KIIVFCSTKKMCDQLARNLT-----------------------RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV 477 (703)
Q Consensus 421 kvLVF~~s~~~a~~la~~L~-----------------------~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv 477 (703)
+.|||++++++|..++..|- +.++..+=|-+++..+..-+.+.|..|.++|+|...-
T Consensus 1361 ~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1361 PAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred CeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 99999999999988776541 1223333388999999999999999999999998866
Q ss_pred ccccCCCCCccEEEE-----ec------CCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 478 AARGLDIKDIRVVVN-----YD------FPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 478 ~~~GIDIp~v~~VI~-----~d------~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
..|+-... +.||. || .+..+.+.+|++|++.|+ +.|+++....+..++++++
T Consensus 1441 -~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1441 -CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred -cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHhc
Confidence 66766643 33442 33 244688999999999995 6699999888888877665
No 149
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.58 E-value=5e-13 Score=157.06 Aligned_cols=117 Identities=21% Similarity=0.365 Sum_probs=84.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhcCCc-eeEecCCCCHHHHHHHHHHHhc----CCCcEEEEcccccccCCCCC--ccEEE
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTRQFG-AAAIHGDKSQSERDYVLNQFRA----GRSPVLVATDVAARGLDIKD--IRVVV 491 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~~~~-~~~lhg~~~~~eR~~vl~~F~~----G~~~ILVaTdv~~~GIDIp~--v~~VI 491 (703)
.+.+|||+++.+..+.++..|..... ....++. ..+..+++.|++ ++-.||++|..+.+|||+|+ +++||
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEE
Confidence 34689999999999999999874322 2333453 356778877764 67789999999999999996 78899
Q ss_pred EecCCC----CH--------------------------HHHHHHHhccCCCCCccEEEEEEecC--ChHHHHHHHHHHH
Q 005313 492 NYDFPT----GV--------------------------EDYVHRIGRTGRAGATGVAYTFFGDQ--DSRYASDLIKLLE 538 (703)
Q Consensus 492 ~~d~P~----s~--------------------------~~yiQriGRagR~G~~g~~i~~~~~~--d~~~~~~l~~~l~ 538 (703)
...+|. ++ ..+.|.+||.-|..++--++++++.. ...+-+.+++.|.
T Consensus 611 I~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 611 ITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhCC
Confidence 988774 11 13468999999997765566666654 3445566665553
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=7.3e-13 Score=156.00 Aligned_cols=118 Identities=21% Similarity=0.326 Sum_probs=85.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhcCCc--eeEecCCCCHHHHHHHHHHHhcCCC-cEEEEcccccccCCCCC--ccEEEEec
Q 005313 420 SKIIVFCSTKKMCDQLARNLTRQFG--AAAIHGDKSQSERDYVLNQFRAGRS-PVLVATDVAARGLDIKD--IRVVVNYD 494 (703)
Q Consensus 420 ~kvLVF~~s~~~a~~la~~L~~~~~--~~~lhg~~~~~eR~~vl~~F~~G~~-~ILVaTdv~~~GIDIp~--v~~VI~~d 494 (703)
.++||||++.+.++.+++.+..... ....++.. .+..+++.|+...- .|+|+|..+++|||+++ +..||...
T Consensus 480 ~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~ 556 (654)
T COG1199 480 GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVG 556 (654)
T ss_pred CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEe
Confidence 4899999999999999999986443 34444444 44478888876655 89999999999999996 57788888
Q ss_pred CCCC------------------------------HHHHHHHHhccCCCCCccEEEEEEecCC--hHHHHHHHHHHHhc
Q 005313 495 FPTG------------------------------VEDYVHRIGRTGRAGATGVAYTFFGDQD--SRYASDLIKLLEGA 540 (703)
Q Consensus 495 ~P~s------------------------------~~~yiQriGRagR~G~~g~~i~~~~~~d--~~~~~~l~~~l~~~ 540 (703)
+|.- ...+.|.+||+-|...+.-++++++..- ..+-+.+.+.|...
T Consensus 557 lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~ 634 (654)
T COG1199 557 LPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPF 634 (654)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCC
Confidence 7642 2346799999999866655666665442 22445555555443
No 151
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.57 E-value=5.2e-13 Score=142.14 Aligned_cols=123 Identities=21% Similarity=0.245 Sum_probs=99.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcC-CCcE-EEEcccccccCCCCCccEEEEe
Q 005313 417 EPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAG-RSPV-LVATDVAARGLDIKDIRVVVNY 493 (703)
Q Consensus 417 ~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G-~~~I-LVaTdv~~~GIDIp~v~~VI~~ 493 (703)
...-|.|||.......+.+.-.|.+ ++.++.+.|+|++..|+..++.|++. .+.| ||+-.+.+.-+|+....+|+.+
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 3345889999999999988888874 78999999999999999999999865 4554 6677888888999999999999
Q ss_pred cCCCCHHHHHHHHhccCCCCCcc--EEEEEEecCChHHHHHHHHHHHhcc
Q 005313 494 DFPTGVEDYVHRIGRTGRAGATG--VAYTFFGDQDSRYASDLIKLLEGAK 541 (703)
Q Consensus 494 d~P~s~~~yiQriGRagR~G~~g--~~i~~~~~~d~~~~~~l~~~l~~~~ 541 (703)
|+.|++..-.|..-|.+|.|+.. .++.|+. +..+..+++++-+...
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i--EnsiE~kIieLQeKKa 763 (791)
T KOG1002|consen 716 DPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI--ENSIEEKIIELQEKKA 763 (791)
T ss_pred cccccHHHHhhhhhhHHhhcCccceeEEEeeh--hccHHHHHHHHHHHHh
Confidence 99999999999999999999754 4444553 3445566776655443
No 152
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.56 E-value=2.9e-13 Score=164.27 Aligned_cols=136 Identities=18% Similarity=0.272 Sum_probs=114.5
Q ss_pred hhHHHHHHHH-H-hcCCCC--eEEEEcCCHHHHHHHHHHHhcC-CceeEecCCCCHHHHHHHHHHHhcC--CCcEEEEcc
Q 005313 404 DKHRRLEQIL-R-SQEPGS--KIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAG--RSPVLVATD 476 (703)
Q Consensus 404 ~k~~~L~~ll-~-~~~~~~--kvLVF~~s~~~a~~la~~L~~~-~~~~~lhg~~~~~eR~~vl~~F~~G--~~~ILVaTd 476 (703)
.|...+..++ . ....+. ++|||++.....+.+...|... +....++|.++.++|..+++.|.++ ..-+|+++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4666677777 2 334556 9999999999999999999865 5899999999999999999999986 445678889
Q ss_pred cccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHh
Q 005313 477 VAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 539 (703)
Q Consensus 477 v~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~ 539 (703)
+.+.|||+...++||+||..|++....|.+.|+.|.|++..+.++-........+++++....
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~ 834 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEK 834 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888877766666666666655543
No 153
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=1.3e-12 Score=150.80 Aligned_cols=127 Identities=24% Similarity=0.248 Sum_probs=96.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.|+++|.-.--.+ ...-|+.+.||-|||+++.+|++..... |..|-||+++..||..=.+++..+...+++
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~-------GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT-------GKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc-------CCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 6667776655444 4567889999999999999998776554 567999999999999999999999999999
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhc------cccccCcccEEEecccccc
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRML 333 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~------~~~l~~~~~IViDEaH~ml 333 (703)
.|.++..+... ..+...-.|||+++|...| .|+|..+ ......+.+.||||+|.+|
T Consensus 156 tvg~i~~~~~~--~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSP--EERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCCh--HHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99988765533 3344445699999999877 3444322 1234668899999999765
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=1.1e-11 Score=146.76 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=59.8
Q ss_pred CCCCCcHHHHHHHHHHH----cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005313 193 GFSSPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il----~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k 268 (703)
.|..+||.|.+.+..+. .++++++.+|||+|||++.|.+++.++.... ..+++++++.|..-..|..+++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP----EVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----ccccEEEEcccchHHHHHHHHHHh
Confidence 46677999999886654 5689999999999999999999998876422 125899999999999999999988
Q ss_pred h
Q 005313 269 F 269 (703)
Q Consensus 269 ~ 269 (703)
.
T Consensus 83 ~ 83 (705)
T TIGR00604 83 L 83 (705)
T ss_pred h
Confidence 4
No 155
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.44 E-value=5.5e-12 Score=147.66 Aligned_cols=311 Identities=21% Similarity=0.193 Sum_probs=172.5
Q ss_pred CCCcHHHHHHHHHHHcC------C--CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005313 195 SSPTPIQAQSWPIALQS------R--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 266 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~g------r--dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~ 266 (703)
..-+.||-.|+..+..- . -+|-.|.||+|||++=.- +.....++..+.++.|..-.|.|--|.-+++
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-----ImyaLsd~~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-----AMYALRDDKQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-----HHHHhCCCCCCceEEEEccccceeccchHHH
Confidence 34578999999888752 1 234459999999976332 2222223445667778778888877777777
Q ss_pred HHhcCCCCceEEEeeCCCCC-------------------------------------------Cchhhhh------cC--
Q 005313 267 VKFGKSSRISCTCLYGGAPK-------------------------------------------GPQLKDI------DR-- 295 (703)
Q Consensus 267 ~k~~~~~~i~v~~~~gg~~~-------------------------------------------~~~~~~l------~~-- 295 (703)
++-.....-...+++|+... ......+ .+
T Consensus 482 r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 482 KTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 66543333333333332110 0000000 00
Q ss_pred CCcEEEECHHHHHHHHHhc---ccccc----CcccEEEecccccccCCChHHHHHHHHHc-CCCceEEEEeccCcHHHHH
Q 005313 296 GVDIVVATPGRLNDILEMR---RISLN----QVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARRQTLMYTATWPREVRK 367 (703)
Q Consensus 296 g~dIlV~Tp~~L~~~l~~~---~~~l~----~~~~IViDEaH~ml~~gf~~~i~~il~~l-~~~~q~L~lSAT~p~~v~~ 367 (703)
...|+|||++.++-..... ...+. .-+.|||||+|.+-.. -...+..++..+ .-...+|+||||+|+.+..
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 2579999999998766321 11111 1357999999964221 223334444322 1245689999999988765
Q ss_pred HHHHhh-----------c---Cceecccccchhhhc---------------------------cccceE--EEEEeccc-
Q 005313 368 IAADLL-----------V---NPVQVNIGNVDELAA---------------------------NKAITQ--HIEVLAPM- 403 (703)
Q Consensus 368 l~~~~l-----------~---~~~~i~i~~~~~~~~---------------------------~~~i~~--~~~~~~~~- 403 (703)
.+..-. . .++.+.+.-+++... ...... .+..+...
T Consensus 641 ~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~ 720 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLP 720 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcc
Confidence 543321 1 111111111111000 000000 11111111
Q ss_pred ----hhHHHHHHHH-----Hh------cC--CCCe---EEEEcCCHHHHHHHHHHHhcC-------CceeEecCCCCHHH
Q 005313 404 ----DKHRRLEQIL-----RS------QE--PGSK---IIVFCSTKKMCDQLARNLTRQ-------FGAAAIHGDKSQSE 456 (703)
Q Consensus 404 ----~k~~~L~~ll-----~~------~~--~~~k---vLVF~~s~~~a~~la~~L~~~-------~~~~~lhg~~~~~e 456 (703)
.....+...+ .. .. .+++ .||-+.+++.+-.+++.|.+. +.+.++|+......
T Consensus 721 ~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~ 800 (1110)
T TIGR02562 721 RENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLL 800 (1110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHH
Confidence 1111121111 11 01 1223 366778888888888777642 34788999988777
Q ss_pred HHHHHHHH----------------------hc----CCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccC
Q 005313 457 RDYVLNQF----------------------RA----GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTG 510 (703)
Q Consensus 457 R~~vl~~F----------------------~~----G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRag 510 (703)
|..+++.+ ++ +...|+|+|.+++.|+|+ +.+.+|- -|.+....+|++||+.
T Consensus 801 Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~ 877 (1110)
T TIGR02562 801 RSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVN 877 (1110)
T ss_pred HHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccc
Confidence 77666543 12 356799999999999999 4555543 2467899999999999
Q ss_pred CCCC
Q 005313 511 RAGA 514 (703)
Q Consensus 511 R~G~ 514 (703)
|.+.
T Consensus 878 R~~~ 881 (1110)
T TIGR02562 878 RHRL 881 (1110)
T ss_pred cccc
Confidence 9874
No 156
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.43 E-value=1.5e-11 Score=138.77 Aligned_cols=306 Identities=16% Similarity=0.189 Sum_probs=169.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----HhcCCCC
Q 005313 200 IQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAV-----KFGKSSR 274 (703)
Q Consensus 200 iQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~-----k~~~~~~ 274 (703)
+-.+++..+..++-+++...||+|||..+.--+|..+....... -.-+.+.-|++-.+.-+.+.+. ..+...+
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~--~~na~v~qprrisaisiaerva~er~e~~g~tvg 459 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA--SFNAVVSQPRRISAISLAERVANERGEEVGETCG 459 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc--cccceeccccccchHHHHHHHHHhhHHhhccccc
Confidence 44455566666667778899999999987776776665533221 1235666677655555544432 2222111
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccC-CChHHHHH----------
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFEPQIRK---------- 343 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~-gf~~~i~~---------- 343 (703)
. ....... .-...--|++||-+-|+..+... +..+.++|+||.|..--. .|.-.+..
T Consensus 460 y--------~vRf~Sa-~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 460 Y--------NVRFDSA-TPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred c--------ccccccc-ccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhh
Confidence 1 1111000 00011359999999998877654 445788999999953211 11111111
Q ss_pred ------------HHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccch------------hhhccc----c--c
Q 005313 344 ------------IVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD------------ELAANK----A--I 393 (703)
Q Consensus 344 ------------il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~------------~~~~~~----~--i 393 (703)
+...+..-.++.++++|+|- ..++...+..+......... .....+ . .
T Consensus 528 v~lmsatIdTd~f~~~f~~~p~~~~~grt~pv--q~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~ 605 (1282)
T KOG0921|consen 528 VVLMSATIDTDLFTNFFSSIPDVTVHGRTFPV--QSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILC 605 (1282)
T ss_pred hhhhhcccchhhhhhhhccccceeeccccccH--HHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccccc
Confidence 11112223344555555542 22222222221111100000 000000 0 0
Q ss_pred eEEEE--------Eeccc----hhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc--------CCceeEecCCCC
Q 005313 394 TQHIE--------VLAPM----DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR--------QFGAAAIHGDKS 453 (703)
Q Consensus 394 ~~~~~--------~~~~~----~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~--------~~~~~~lhg~~~ 453 (703)
...+. .+... .-.+.+...+....-.+-++||.+-...+-.|...|.. .+.+..+|+-..
T Consensus 606 dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~ 685 (1282)
T KOG0921|consen 606 DPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLT 685 (1282)
T ss_pred ChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcc
Confidence 00000 00000 01111222222223345789999999888888877753 356788999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecC------------------CCCHHHHHHHHhccCCCCCc
Q 005313 454 QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF------------------PTGVEDYVHRIGRTGRAGAT 515 (703)
Q Consensus 454 ~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~------------------P~s~~~yiQriGRagR~G~~ 515 (703)
..+..++.+....|..++|++|.++..-|.|.++..||+.+. ..+....+|+.||++|. .+
T Consensus 686 ~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~ 764 (1282)
T KOG0921|consen 686 SQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RP 764 (1282)
T ss_pred cHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cc
Confidence 889999999999999999999999999999988888775432 12566778999999887 55
Q ss_pred cEEEEEE
Q 005313 516 GVAYTFF 522 (703)
Q Consensus 516 g~~i~~~ 522 (703)
|.|..+.
T Consensus 765 G~~f~lc 771 (1282)
T KOG0921|consen 765 GFCFHLC 771 (1282)
T ss_pred ccccccc
Confidence 6666653
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.42 E-value=6.4e-12 Score=145.58 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=92.8
Q ss_pred ecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCc---hhhhhc
Q 005313 218 AKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLKDID 294 (703)
Q Consensus 218 ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~---~~~~l~ 294 (703)
+-+|||||.+|+-.+-..+.. |..+|||+|...|..|+.+.|++.+.. ..+..++.+....+ .|..+.
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~-------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA-------GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc-------CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHHHh
Confidence 336999999998766666654 568999999999999999999987642 34666776655443 344455
Q ss_pred CC-CcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC-----ChHHHHHHHHHcCCCceEEEEeccCcHHHHHH
Q 005313 295 RG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-----FEPQIRKIVKEVPARRQTLMYTATWPREVRKI 368 (703)
Q Consensus 295 ~g-~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g-----f~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l 368 (703)
.+ ..|||+|-..+ ...+.++.+|||||-|.-.-.. +...=..++.....+..+|+-|||+.-+....
T Consensus 238 ~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 238 RGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 54 78999996554 3467889999999999543211 11111222333345677999999987655443
No 158
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.41 E-value=7.2e-13 Score=111.63 Aligned_cols=79 Identities=48% Similarity=0.777 Sum_probs=73.0
Q ss_pred HHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCC
Q 005313 435 LARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAG 513 (703)
Q Consensus 435 la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G 513 (703)
+++.|. ..+.+..+|++++.++|..+++.|+++...|||+|+++++|+|++++++||++++|++..+|.|++||++|.|
T Consensus 3 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 3 LAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred HHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 445554 3678999999999999999999999999999999999999999999999999999999999999999999975
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.40 E-value=6.8e-12 Score=141.81 Aligned_cols=121 Identities=21% Similarity=0.207 Sum_probs=100.8
Q ss_pred hHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHhc-----------------------CCceeEecCCCCHHHHHHH
Q 005313 405 KHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTR-----------------------QFGAAAIHGDKSQSERDYV 460 (703)
Q Consensus 405 k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~~-----------------------~~~~~~lhg~~~~~eR~~v 460 (703)
|.-+|+++|+.. .-+.++|||..+....+.+..+|.. +.....|.|..+..+|+.+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 344566666543 4578999999999999999888852 1235668999999999999
Q ss_pred HHHHhcCCC----cEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecC
Q 005313 461 LNQFRAGRS----PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 461 l~~F~~G~~----~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
...|++-.- -+||+|.+.+-|||+-.++.||+||..|++.--+|-|=|+.|.|+...||+|-.-.
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 999985422 27999999999999999999999999999999999999999999999999876533
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.37 E-value=1.7e-10 Score=126.23 Aligned_cols=239 Identities=19% Similarity=0.240 Sum_probs=165.2
Q ss_pred CCcEEEECHHHHHHHHHh------ccccccCcccEEEeccccccc--CCChHHHHHHHHHcCC-----------------
Q 005313 296 GVDIVVATPGRLNDILEM------RRISLNQVSYLVLDEADRMLD--MGFEPQIRKIVKEVPA----------------- 350 (703)
Q Consensus 296 g~dIlV~Tp~~L~~~l~~------~~~~l~~~~~IViDEaH~ml~--~gf~~~i~~il~~l~~----------------- 350 (703)
..|||||+|=-|...+.. ..-.|+.+.++|||.||.|+- |.+...+.+.+...|.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 478999999888777763 122367899999999997653 3333333333333332
Q ss_pred ----CceEEEEeccCcHHHHHHHHHhhcCce-ecccccchh-----hhccccceEEEEEeccch-------hHHHH-HHH
Q 005313 351 ----RRQTLMYTATWPREVRKIAADLLVNPV-QVNIGNVDE-----LAANKAITQHIEVLAPMD-------KHRRL-EQI 412 (703)
Q Consensus 351 ----~~q~L~lSAT~p~~v~~l~~~~l~~~~-~i~i~~~~~-----~~~~~~i~~~~~~~~~~~-------k~~~L-~~l 412 (703)
-+|+|++|+...+++..++...+.+.. .+.+..... ......+.|.+..+.... ..+.. ..+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 269999999999999999888655421 111111111 122234556655443221 11111 112
Q ss_pred HHh---cCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc--cccccCCCCC
Q 005313 413 LRS---QEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD--VAARGLDIKD 486 (703)
Q Consensus 413 l~~---~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd--v~~~GIDIp~ 486 (703)
+.. ......+|||+++--+.-.+-.+|+ +.+..+.+|.-.++.+..++-..|..|+.+||+.|. -.-+=..|.+
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irG 370 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRG 370 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecC
Confidence 222 2345789999999999999999888 467888899999999999999999999999999996 4456677889
Q ss_pred ccEEEEecCCCCHHHHHHHHhccCCCCC------ccEEEEEEecCChHHHHHHH
Q 005313 487 IRVVVNYDFPTGVEDYVHRIGRTGRAGA------TGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 487 v~~VI~~d~P~s~~~yiQriGRagR~G~------~g~~i~~~~~~d~~~~~~l~ 534 (703)
+.+||+|.+|..+.-|...+.-...... ...|.++++.-|.-.++.++
T Consensus 371 i~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 371 IRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred CcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 9999999999999988887765544432 57899999887766555443
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.35 E-value=6.2e-11 Score=135.87 Aligned_cols=289 Identities=18% Similarity=0.239 Sum_probs=175.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhh
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l 293 (703)
.+|.+|+|||||.+.+- ++...... ...++|+|+.++.|+.++.+.+++.... ++... -..... .+.
T Consensus 52 ~vVRSpMGTGKTtaLi~----wLk~~l~~--~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y---~d~~~~-~i~-- 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIR----WLKDALKN--PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNY---LDSDDY-IID-- 118 (824)
T ss_pred EEEECCCCCCcHHHHHH----HHHHhccC--CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceee---eccccc-ccc--
Confidence 46669999999976433 22222111 2348999999999999999988775432 22211 111110 000
Q ss_pred cCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHH-------HHHHHHcCCCceEEEEeccCcHHHH
Q 005313 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQI-------RKIVKEVPARRQTLMYTATWPREVR 366 (703)
Q Consensus 294 ~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i-------~~il~~l~~~~q~L~lSAT~p~~v~ 366 (703)
.+.++-+++..+.|..+.. ..++++++|||||+-..+..-|.+.+ ..+...+.....+|++-|++.....
T Consensus 119 ~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTV 195 (824)
T ss_pred ccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHH
Confidence 1135788888888865432 24667999999999977655333222 2233445667789999999999999
Q ss_pred HHHHHhhcCc-eecccccch------------------hhhccccce----E-----------EEEEeccchhHHHHHHH
Q 005313 367 KIAADLLVNP-VQVNIGNVD------------------ELAANKAIT----Q-----------HIEVLAPMDKHRRLEQI 412 (703)
Q Consensus 367 ~l~~~~l~~~-~~i~i~~~~------------------~~~~~~~i~----~-----------~~~~~~~~~k~~~L~~l 412 (703)
+++..+..+. +.+.+.... .+....... + .-......+....+..+
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L 275 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSEL 275 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHH
Confidence 9988875432 222211100 000000000 0 00000012233455666
Q ss_pred HHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccE--
Q 005313 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV-- 489 (703)
Q Consensus 413 l~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~-- 489 (703)
+.....++++-|||.|...++.+++.... ...+..+++..+.. ++ +. -++.+|+|=|.++..||++....+
T Consensus 276 ~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~~--W~~~~VviYT~~itvG~Sf~~~HF~~ 349 (824)
T PF02399_consen 276 LARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-ES--WKKYDVVIYTPVITVGLSFEEKHFDS 349 (824)
T ss_pred HHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-cc--ccceeEEEEeceEEEEeccchhhceE
Confidence 66777888999999999999999888764 34566666655544 22 22 357889999999999999975532
Q ss_pred EEEe--cCC--CCHHHHHHHHhccCCCCCccEEEEEEecC
Q 005313 490 VVNY--DFP--TGVEDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 490 VI~~--d~P--~s~~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
|+-| ... .+.....|++||+-.. .....+++++..
T Consensus 350 ~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 350 MFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 3333 222 2455689999999666 445677777643
No 162
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=6.4e-11 Score=138.28 Aligned_cols=123 Identities=24% Similarity=0.351 Sum_probs=94.8
Q ss_pred cchhHHHHHH-HHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 005313 402 PMDKHRRLEQ-ILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 479 (703)
Q Consensus 402 ~~~k~~~L~~-ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~ 479 (703)
..+|...+.+ +.+.+..+.++||-|.+.+..+.|++.|. +.++..+|+......|-+-|-++=+.| .|-|||++++
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAG 687 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcC
Confidence 3455555444 44455788999999999999999999998 467777777665444444444433333 4999999999
Q ss_pred ccCCCC---Cc-----cEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCC
Q 005313 480 RGLDIK---DI-----RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 526 (703)
Q Consensus 480 ~GIDIp---~v-----~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d 526 (703)
||.||. .| =+||-...+.|...-.|..||+||.|.+|.+..|++-.|
T Consensus 688 RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 999996 22 378888899999999999999999999999999887655
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.30 E-value=8.1e-12 Score=132.24 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=93.8
Q ss_pred HHHHHHHHHHc-------------CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005313 200 IQAQSWPIALQ-------------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 266 (703)
Q Consensus 200 iQ~~ai~~il~-------------grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~ 266 (703)
||.+++..++. .+.+|++.++|+|||+..+..+. .+....... ....+|||||. .+..||..++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~-~~~~~LIv~P~-~l~~~W~~E~ 77 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQR-GEKKTLIVVPS-SLLSQWKEEI 77 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTS-S-S-EEEEE-T-TTHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccc-cccceeEeecc-chhhhhhhhh
Confidence 68888877643 25688999999999987665443 333322111 11259999999 8889999999
Q ss_pred HHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHH---hccccccCcccEEEecccccccCCChHHHHH
Q 005313 267 VKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE---MRRISLNQVSYLVLDEADRMLDMGFEPQIRK 343 (703)
Q Consensus 267 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~---~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~ 343 (703)
.++.....+++..+.+...............+|+|+|++.+..... ...+..-++++|||||+|.+-+. ......
T Consensus 78 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~ 155 (299)
T PF00176_consen 78 EKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYK 155 (299)
T ss_dssp HHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHH
T ss_pred ccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccc
Confidence 9998655566666665541222222233458999999999981110 11112234899999999998443 333444
Q ss_pred HHHHcCCCceEEEEeccCc
Q 005313 344 IVKEVPARRQTLMYTATWP 362 (703)
Q Consensus 344 il~~l~~~~q~L~lSAT~p 362 (703)
.+..+. ....+++|||+-
T Consensus 156 ~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 156 ALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHHCCC-ECEEEEE-SS-S
T ss_pred cccccc-cceEEeeccccc
Confidence 444465 556788999963
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.18 E-value=8.7e-10 Score=133.26 Aligned_cols=295 Identities=20% Similarity=0.257 Sum_probs=160.3
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 291 (703)
+..+|+--||||||++.+..+-..+.. ...|+||||+.+++|-.|+.+++..+........ .......++
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccCHHHHH
Confidence 458999999999999866544433333 2357999999999999999999999876543221 222233333
Q ss_pred h-hcCC-CcEEEECHHHHHHHHHhcc-cccc-CcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHH
Q 005313 292 D-IDRG-VDIVVATPGRLNDILEMRR-ISLN-QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRK 367 (703)
Q Consensus 292 ~-l~~g-~dIlV~Tp~~L~~~l~~~~-~~l~-~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~ 367 (703)
. +... -.|+|+|.++|...+.... ..+. +--+||+||||+-- .| ..-..+...+ ++...++||.|+--.-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ-~G--~~~~~~~~~~-~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ-YG--ELAKLLKKAL-KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc-cc--HHHHHHHHHh-ccceEEEeeCCccccccc
Confidence 3 3323 4799999999988776531 1122 22368999999853 22 2222223333 346799999997321111
Q ss_pred H-HHHhhcCceecccccchhhhccccceEEEE------------------------Eec--------------------c
Q 005313 368 I-AADLLVNPVQVNIGNVDELAANKAITQHIE------------------------VLA--------------------P 402 (703)
Q Consensus 368 l-~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~------------------------~~~--------------------~ 402 (703)
. ....+.+.+....-. +.+.....++..+. ... .
T Consensus 420 ~tt~~~fg~ylh~Y~i~-daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 420 DTTKDVFGDYLHTYTIT-DAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred cchhhhhcceeEEEecc-hhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 1 111111111110000 00000000000000 000 0
Q ss_pred chhHHHHHHH---HHh-cCCCCeEEEEcCCHHHHHHHHHHHhcCC------------------------ceeEecCCCCH
Q 005313 403 MDKHRRLEQI---LRS-QEPGSKIIVFCSTKKMCDQLARNLTRQF------------------------GAAAIHGDKSQ 454 (703)
Q Consensus 403 ~~k~~~L~~l---l~~-~~~~~kvLVF~~s~~~a~~la~~L~~~~------------------------~~~~lhg~~~~ 454 (703)
.........+ +.. .....++++.|.+++.|..+.+.+.... .....|... .
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-K 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-H
Confidence 0000111111 112 3345688888888884444444332110 000001112 2
Q ss_pred HHHHHHHHH--HhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCC----ccEEEEEEe
Q 005313 455 SERDYVLNQ--FRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGA----TGVAYTFFG 523 (703)
Q Consensus 455 ~eR~~vl~~--F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~----~g~~i~~~~ 523 (703)
..+...... .+....+|||.++++-.|.|.|.++++. +|-|.---..+|.+-|+.|.-. .|..+.|..
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 233344444 3467789999999999999999888655 4555666688999999999642 245555543
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.11 E-value=4.1e-10 Score=104.34 Aligned_cols=135 Identities=19% Similarity=0.123 Sum_probs=77.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 290 (703)
++-.++-..+|+|||.-.+.-++..... .+.++|||.|||.++.++.+.++. ..+++....-.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~------~~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~------- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK------RRLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARM------- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH------TT--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS-------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH------ccCeEEEecccHHHHHHHHHHHhc----CCcccCceeee-------
Confidence 3445777899999998655444443322 145899999999999988777643 33433311111
Q ss_pred hhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC--ChHHHHHHHHHcCCCceEEEEeccCcHHH
Q 005313 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG--FEPQIRKIVKEVPARRQTLMYTATWPREV 365 (703)
Q Consensus 291 ~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g--f~~~i~~il~~l~~~~q~L~lSAT~p~~v 365 (703)
.....+.-|-|+|+..+..++.. ...+.++++||+||||.+-... +.-.+..+ .. .....+|++|||+|-..
T Consensus 67 ~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT--
T ss_pred ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCC
Confidence 01123356889999999887765 5667899999999999642111 11222222 12 23357999999998654
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.10 E-value=8.6e-10 Score=116.61 Aligned_cols=73 Identities=23% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCcHHHHHHH----HHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 196 SPTPIQAQSW----PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 196 ~p~piQ~~ai----~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
.++|.|.+.+ ..+.++.++|+.||||+|||+++|+|++.++....... ...+++|+++|..+.+|...+++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-cccceeEEeccHHHHHHHHHHHHhc
Confidence 4699999954 55567889999999999999999999988766532210 1247999999999999988878765
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.10 E-value=8.6e-10 Score=116.61 Aligned_cols=73 Identities=23% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCcHHHHHHH----HHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 196 SPTPIQAQSW----PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 196 ~p~piQ~~ai----~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
.++|.|.+.+ ..+.++.++|+.||||+|||+++|+|++.++....... ...+++|+++|..+.+|...+++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-cccceeEEeccHHHHHHHHHHHHhc
Confidence 4699999954 55567889999999999999999999988766532210 1247999999999999988878765
No 168
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.8e-08 Score=109.09 Aligned_cols=340 Identities=21% Similarity=0.270 Sum_probs=205.5
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEE-ecCCChH--HHHHHHHHHHHHhhccC-----C-------------------CCCC
Q 005313 194 FSSPTPIQAQSWPIALQSRDIVAI-AKTGSGK--TLGYLLPGFIHLKRCRN-----D-------------------PRLG 246 (703)
Q Consensus 194 ~~~p~piQ~~ai~~il~grdvlv~-ApTGsGK--Tla~llp~l~~l~~~~~-----~-------------------~~~g 246 (703)
-..+|+.|.+.+..+.+=+|++.. ...+.|+ +-+|.+-++.++.+.+. + .-.-
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 357899999999988888998875 2335566 44677777777754221 0 0123
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCc---------eEEEeeCCCC--------CCc---------------------
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRI---------SCTCLYGGAP--------KGP--------------------- 288 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i---------~v~~~~gg~~--------~~~--------------------- 288 (703)
|+||||||+|+-|..+.+.+..++....- +...-+++.+ +.+
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999999888776332211 0001111100 000
Q ss_pred --hhhhhc--CCCcEEEECHHHHHHHHHh---cc---ccccCcccEEEecccccccCCChHHHHHHHHH---cCCC----
Q 005313 289 --QLKDID--RGVDIVVATPGRLNDILEM---RR---ISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE---VPAR---- 351 (703)
Q Consensus 289 --~~~~l~--~g~dIlV~Tp~~L~~~l~~---~~---~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~---l~~~---- 351 (703)
.++... ...|||||+|=-|.-++.. ++ -.++.+.++|||-||.|+...|+. +..|+.. +|.+
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHhhcCcccccCC
Confidence 001111 2478999999888666652 11 125678899999999887554432 3333333 3321
Q ss_pred -----------------ceEEEEeccCcHHHHHHHHHhhcCcee-cccc---cchhhh-ccccceEEEEEe---cc----
Q 005313 352 -----------------RQTLMYTATWPREVRKIAADLLVNPVQ-VNIG---NVDELA-ANKAITQHIEVL---AP---- 402 (703)
Q Consensus 352 -----------------~q~L~lSAT~p~~v~~l~~~~l~~~~~-i~i~---~~~~~~-~~~~i~~~~~~~---~~---- 402 (703)
+|+|+||+-.......++..+..+..- +... ....+. ....++|.+..+ ..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 488899988777777776666543210 1000 000000 001122221111 11
Q ss_pred chhHHHH-HHHHHhcC--CCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc--
Q 005313 403 MDKHRRL-EQILRSQE--PGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-- 476 (703)
Q Consensus 403 ~~k~~~L-~~ll~~~~--~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-- 476 (703)
....... ..++-... ....+|||.++--+.-.+-.++++ .+....+|.-.++..-.++-+.|-.|...||+-|.
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 1112221 22222221 134689999999988888888874 44455556555666666777889999999999996
Q ss_pred cccccCCCCCccEEEEecCCCCHHHH---HHHHhccCCCC----CccEEEEEEecCChHHHHHHH
Q 005313 477 VAARGLDIKDIRVVVNYDFPTGVEDY---VHRIGRTGRAG----ATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 477 v~~~GIDIp~v~~VI~~d~P~s~~~y---iQriGRagR~G----~~g~~i~~~~~~d~~~~~~l~ 534 (703)
-.-+-.+|.+|..||+|.+|.++.-| +.+++|+.-.| ..-.|.+++++-|.-.++.++
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 34567899999999999999998655 56666665444 235788888887765554443
No 169
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.93 E-value=1.3e-07 Score=105.94 Aligned_cols=117 Identities=19% Similarity=0.286 Sum_probs=95.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-CC------------------ceeEecCCCCHHHHHHHHHHHhcCC--C-cEEEEc
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-QF------------------GAAAIHGDKSQSERDYVLNQFRAGR--S-PVLVAT 475 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-~~------------------~~~~lhg~~~~~eR~~vl~~F~~G~--~-~ILVaT 475 (703)
.+.++|||.......+.+.+.|.+ ++ ....+.|..+..+|++++++|.+-. . -+|++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 356999999999999998888864 21 2335778889999999999997532 2 478899
Q ss_pred ccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 476 DVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 476 dv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
....-|||+-..+.+|.||.-|++..-.|.+-|+-|-|++..|++|-.--|....++|.
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 99999999998889999999999999999999999999999999987665555444443
No 170
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.83 E-value=6.4e-08 Score=112.19 Aligned_cols=318 Identities=19% Similarity=0.239 Sum_probs=185.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
-++++-.|.+-.+.-...-|+-+.||-|||+++.+|+...... |..|.+|.-..-|+.--.+++.++...+++
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~-------gkgVhvVTvNdYLA~RDae~m~~l~~~LGl 150 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA-------GKGVHVVTVNDYLARRDAEWMGPLYEFLGL 150 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC-------CCCcEEeeehHHhhhhCHHHHHHHHHHcCC
Confidence 3455556666666667778889999999999999887655433 446888888888999888999999888999
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhc------cccccCcccEEEeccccccc----------C---
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRMLD----------M--- 335 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~------~~~l~~~~~IViDEaH~ml~----------~--- 335 (703)
.+.++..+....+..... .|||..+|...| .|++..+ ......+.+.|+||+|-++= .
T Consensus 151 svG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~ 228 (822)
T COG0653 151 SVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAE 228 (822)
T ss_pred ceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccc
Confidence 888887776444333332 489999998766 2333221 22234578889999986541 1
Q ss_pred ---CChHHHHHHHHHcCCC--------ceEEEEecc-C--------------cHHHH------HHH--HHhhcCce----
Q 005313 336 ---GFEPQIRKIVKEVPAR--------RQTLMYTAT-W--------------PREVR------KIA--ADLLVNPV---- 377 (703)
Q Consensus 336 ---gf~~~i~~il~~l~~~--------~q~L~lSAT-~--------------p~~v~------~l~--~~~l~~~~---- 377 (703)
.....+..++..+... .+.|.++-. + +..+. ..+ ..++....
T Consensus 229 ~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIV 308 (822)
T COG0653 229 DSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIV 308 (822)
T ss_pred cCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEE
Confidence 0122222333222111 111111111 0 00000 000 00000000
Q ss_pred ---------------------------------------------eccccc----------------ch-----------
Q 005313 378 ---------------------------------------------QVNIGN----------------VD----------- 385 (703)
Q Consensus 378 ---------------------------------------------~i~i~~----------------~~----------- 385 (703)
.+.+.+ .+
T Consensus 309 rd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~ 388 (822)
T COG0653 309 RDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLD 388 (822)
T ss_pred ecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCc
Confidence 000000 00
Q ss_pred --hhhccccce----EEEEEeccchhHHH-HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHH
Q 005313 386 --ELAANKAIT----QHIEVLAPMDKHRR-LEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSER 457 (703)
Q Consensus 386 --~~~~~~~i~----~~~~~~~~~~k~~~-L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR 457 (703)
.++.+..+. ..........|... +.++...+..++++||-+.+.+..+.+.+.|. .+++..++...-...+-
T Consensus 389 vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA 468 (822)
T COG0653 389 VVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREA 468 (822)
T ss_pred eeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHH
Confidence 000000000 00111223345444 44555566788999999999999999999998 46776666665553333
Q ss_pred HHHHHHHhcCCC-cEEEEcccccccCCCCCcc-----------EEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecC
Q 005313 458 DYVLNQFRAGRS-PVLVATDVAARGLDIKDIR-----------VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 458 ~~vl~~F~~G~~-~ILVaTdv~~~GIDIp~v~-----------~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
+.+.+ .|+. -|-|||.++++|-||.--. +||-..--.|...--|..||+||.|.+|.+-.|++-.
T Consensus 469 ~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 469 EIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred HHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 33333 3333 3789999999999995221 3554444456666779999999999988887777533
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.79 E-value=6e-08 Score=100.39 Aligned_cols=129 Identities=24% Similarity=0.242 Sum_probs=94.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 005313 194 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273 (703)
Q Consensus 194 ~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~ 273 (703)
-..|++.|.-++-.+..|+ |+...||-|||++..+++...... |..|=||+.+..||..=++++..+...+
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-------G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-------GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-------SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-------cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 3488999999997776655 899999999999988877666554 5689999999999999999999999999
Q ss_pred CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHH-HHHHhcc------ccccCcccEEEecccccc
Q 005313 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLN-DILEMRR------ISLNQVSYLVLDEADRML 333 (703)
Q Consensus 274 ~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~-~~l~~~~------~~l~~~~~IViDEaH~ml 333 (703)
++.+.++..+......... -.++|+++|...|. |+|.... .....+.++||||+|.|+
T Consensus 146 Glsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999887653322122 23799999998884 4554321 114578999999999765
No 172
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.70 E-value=1.2e-07 Score=109.94 Aligned_cols=118 Identities=16% Similarity=0.094 Sum_probs=95.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCc--EEEEcccccccCCCCCccEEEEecCC
Q 005313 420 SKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSP--VLVATDVAARGLDIKDIRVVVNYDFP 496 (703)
Q Consensus 420 ~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~--ILVaTdv~~~GIDIp~v~~VI~~d~P 496 (703)
.++|||+.-...++.+...|. +.+....+.|.|+...|.+++..|..+... .|++..+...|+|+..+.+||..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 499999999999998887776 456677788999999999999999854432 46788899999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHH
Q 005313 497 TGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLL 537 (703)
Q Consensus 497 ~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l 537 (703)
|++...-|.|-|+.|.|+...+.+.-..-.....++++++-
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 99999999999999999887776644333333344455544
No 173
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.67 E-value=9.7e-09 Score=70.29 Aligned_cols=31 Identities=42% Similarity=0.853 Sum_probs=29.7
Q ss_pred CCCCccccccCCccceEeecCCCCcccccCC
Q 005313 23 LPKPWKGLVDGRTGYLYFWNPETNVTQYERP 53 (703)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (703)
||.+|++++|..+|..||||.+|++|||++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 8999999998779999999999999999998
No 174
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.64 E-value=3.2e-07 Score=108.71 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=57.3
Q ss_pred CCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCC--Ccc-------EEEE-EEecCChHHHHHHHHHH
Q 005313 468 RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAG--ATG-------VAYT-FFGDQDSRYASDLIKLL 537 (703)
Q Consensus 468 ~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G--~~g-------~~i~-~~~~~d~~~~~~l~~~l 537 (703)
.+++|++..++.+|.|.|++-++.-+.-..|...-.|.+||..|.- +.| ..++ +.+.....++..|++-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 6789999999999999999999999998889999999999999952 111 2233 33456677888888777
Q ss_pred Hhc
Q 005313 538 EGA 540 (703)
Q Consensus 538 ~~~ 540 (703)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 175
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.54 E-value=2.5e-06 Score=101.05 Aligned_cols=65 Identities=15% Similarity=0.081 Sum_probs=56.9
Q ss_pred CcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccC
Q 005313 297 VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 361 (703)
Q Consensus 297 ~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~ 361 (703)
..|+++||..|...+..+.+.+..+..|||||||++....-...+.++...-.+..-+.+|||.+
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 57999999999888888899999999999999999987777777778887777777789999986
No 176
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.52 E-value=2.8e-06 Score=97.37 Aligned_cols=72 Identities=11% Similarity=0.166 Sum_probs=57.0
Q ss_pred CCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCC--CccEEE-----------EEEecCChHHHHHH
Q 005313 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAG--ATGVAY-----------TFFGDQDSRYASDL 533 (703)
Q Consensus 467 G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G--~~g~~i-----------~~~~~~d~~~~~~l 533 (703)
...++|++..++-+|.|-|+|-+++-+....|...=+|.+||..|.- +.|.=+ +++...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 45789999999999999999999999999999999999999999963 333322 24455666677777
Q ss_pred HHHHH
Q 005313 534 IKLLE 538 (703)
Q Consensus 534 ~~~l~ 538 (703)
++.+.
T Consensus 562 qkEI~ 566 (985)
T COG3587 562 QKEIN 566 (985)
T ss_pred HHHHH
Confidence 66554
No 177
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.39 E-value=1.9e-07 Score=108.46 Aligned_cols=259 Identities=22% Similarity=0.268 Sum_probs=155.4
Q ss_pred CCcHHHHHHHHHHHc-CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 196 SPTPIQAQSWPIALQ-SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 196 ~p~piQ~~ai~~il~-grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
...|+|.+.+-.+.. ..++++-+|||+|||++|.++++..+.... +.++++++|.++|+..-.+.+.+.....+
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-----~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-----GSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC-----CccEEEEcCCchhhcccccchhhhcccCC
Confidence 444566666544332 357888899999999999998887776533 35899999999999987777666555558
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHH--hccccccCcccEEEecccccccCCChHHHHHHHH------
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE--MRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK------ 346 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~--~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~------ 346 (703)
+++..+.|..... ...+ ...+|+|+||+++..+.. ...-.+++++.+|+||.|++.+. ..+.++.+..
T Consensus 1002 ~k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCC--hhhe-ecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCc
Confidence 8898888877654 1222 237899999999977765 33445788999999999976543 3333333322
Q ss_pred -HcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEE-------EEeccchhHHHHHHHHHhcCC
Q 005313 347 -EVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI-------EVLAPMDKHRRLEQILRSQEP 418 (703)
Q Consensus 347 -~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~-------~~~~~~~k~~~L~~ll~~~~~ 418 (703)
..++..+++++|.-+ ....+++.++-..+. .+..... ....+..++ .......+.......++...+
T Consensus 1078 ~~t~~~vr~~glsta~-~na~dla~wl~~~~~-~nf~~sv---rpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTAL-ANANDLADWLNIKDM-YNFRPSV---RPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred cccCcchhhhhHhhhh-hccHHHHHHhCCCCc-CCCCccc---ccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 233445555555332 233344433322222 2221111 111111111 111122333445677888889
Q ss_pred CCeEEEEcCCHHHHHHHHHHH----h-cCCceeEecCCCCHHHHHHHHHHHhcCCCc
Q 005313 419 GSKIIVFCSTKKMCDQLARNL----T-RQFGAAAIHGDKSQSERDYVLNQFRAGRSP 470 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L----~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ 470 (703)
..++|||+.+++....-+..| . +.-+...++-+ ..+-+.++...++..++
T Consensus 1153 ~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 999999999877544333333 2 22233344433 66666777766665554
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.32 E-value=4e-06 Score=84.98 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=49.2
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEecCCChHHHHHHHHHHHHHhhc--cCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005313 196 SPTPIQAQSWPIALQSRD-IVAIAKTGSGKTLGYLLPGFIHLKRC--RNDPRLGPTVLVLSPTRELATQIQDEAVK 268 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grd-vlv~ApTGsGKTla~llp~l~~l~~~--~~~~~~g~~vLIl~PtreLa~Q~~~~~~k 268 (703)
++.+.|.+|+..++.... .+|.+|+|+|||.+.. .++..+... ......+.++||++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367889999999999998 8899999999995433 233333110 00112346899999999999999888877
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.30 E-value=1.5e-05 Score=83.19 Aligned_cols=176 Identities=18% Similarity=0.159 Sum_probs=108.4
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc----------CCCEEEEecCCChHHHHHHHHHHHHHhhcc
Q 005313 171 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQ----------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCR 240 (703)
Q Consensus 171 ~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~----------grdvlv~ApTGsGKTla~llp~l~~l~~~~ 240 (703)
+|-.++. +.||++++.. -.+...|.|++-.+.+ ..-+++-..||.||--...-.|+......
T Consensus 19 ~P~~~y~-~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G- 90 (303)
T PF13872_consen 19 PPDPTYR-LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG- 90 (303)
T ss_pred CCCCCcc-cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-
Confidence 3334443 4677765542 2467889998866543 23467778999999865444345544442
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc---ccc
Q 005313 241 NDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR---RIS 317 (703)
Q Consensus 241 ~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~---~~~ 317 (703)
..+.|+|+.+..|.....+.++.++.. .+.+..+..- ..... ..-...||++|+..|....... ...
T Consensus 91 -----r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~~~---~~~~~GvlF~TYs~L~~~~~~~~~~~sR 160 (303)
T PF13872_consen 91 -----RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYGDI---IRLKEGVLFSTYSTLISESQSGGKYRSR 160 (303)
T ss_pred -----CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccCcC---CCCCCCccchhHHHHHhHHhccCCccch
Confidence 136899999999999999999888755 3433333221 11110 1123569999999987654211 111
Q ss_pred c--------cC-cccEEEecccccccCCC--------hHHHHHHHHHcCCCceEEEEeccCcHHH
Q 005313 318 L--------NQ-VSYLVLDEADRMLDMGF--------EPQIRKIVKEVPARRQTLMYTATWPREV 365 (703)
Q Consensus 318 l--------~~-~~~IViDEaH~ml~~gf--------~~~i~~il~~l~~~~q~L~lSAT~p~~v 365 (703)
+ .+ =.+|||||||.+.+..- ...+..+.+.+|..+ ++.+|||.-.+.
T Consensus 161 l~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep 224 (303)
T PF13872_consen 161 LDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEP 224 (303)
T ss_pred HHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCC
Confidence 1 22 24899999999876532 134555666776555 999999964433
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.29 E-value=3.7e-06 Score=83.95 Aligned_cols=123 Identities=20% Similarity=0.173 Sum_probs=73.3
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 005313 196 SPTPIQAQSWPIALQSR--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273 (703)
Q Consensus 196 ~p~piQ~~ai~~il~gr--dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~ 273 (703)
+|++-|.+++..++... -+++.++.|+|||.+ +..+...+.. .+.++++++||...+.++.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~------~g~~v~~~apT~~Aa~~L~~~~~------ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA------AGKRVIGLAPTNKAAKELREKTG------ 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH------TT--EEEEESSHHHHHHHHHHHT------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh------CCCeEEEECCcHHHHHHHHHhhC------
Confidence 46788999999997654 356679999999975 3334444443 13589999999988887655521
Q ss_pred CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc----cccCcccEEEecccccccCCChHHHHHHHHHcC
Q 005313 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI----SLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 349 (703)
Q Consensus 274 ~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~----~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~ 349 (703)
+. ..|..+++........ .+...++||||||-++ -...+..++..++
T Consensus 68 -~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~~ 118 (196)
T PF13604_consen 68 -IE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLAK 118 (196)
T ss_dssp -S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS-
T ss_pred -cc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHHH
Confidence 11 2232222221111111 1456689999999976 3567778888777
Q ss_pred C-CceEEEEecc
Q 005313 350 A-RRQTLMYTAT 360 (703)
Q Consensus 350 ~-~~q~L~lSAT 360 (703)
. ..++|++-=+
T Consensus 119 ~~~~klilvGD~ 130 (196)
T PF13604_consen 119 KSGAKLILVGDP 130 (196)
T ss_dssp T-T-EEEEEE-T
T ss_pred hcCCEEEEECCc
Confidence 6 5666766554
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.24 E-value=5.9e-06 Score=80.32 Aligned_cols=104 Identities=19% Similarity=0.370 Sum_probs=73.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhcCC---ceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc--cccccCCCCC--ccEEEE
Q 005313 420 SKIIVFCSTKKMCDQLARNLTRQF---GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD--VAARGLDIKD--IRVVVN 492 (703)
Q Consensus 420 ~kvLVF~~s~~~a~~la~~L~~~~---~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd--v~~~GIDIp~--v~~VI~ 492 (703)
+.+||||++.+.++.+.+.+.... ...++.. ...++..+++.|+++.-.||+++. .+.+|||+++ ++.||.
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii 87 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVII 87 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeee
Confidence 699999999999999999987532 2223332 355788999999999999999998 9999999996 778999
Q ss_pred ecCCC----CH--------------------------HHHHHHHhccCCCCCccEEEEEEecC
Q 005313 493 YDFPT----GV--------------------------EDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 493 ~d~P~----s~--------------------------~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
..+|. ++ ....|.+||+-|..++--++++++..
T Consensus 88 ~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 88 VGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 98884 11 12358999999998776666666554
No 182
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.23 E-value=7.5e-07 Score=61.46 Aligned_cols=31 Identities=42% Similarity=0.782 Sum_probs=29.8
Q ss_pred CCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 23 LPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
||.+|+..+|.+ |..||+|.+|+++||++|.
T Consensus 1 lp~gW~~~~~~~-g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPD-GRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCC-CCEEEEECCCCCEEcCCCC
Confidence 799999999999 9999999999999999995
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.22 E-value=2.5e-06 Score=85.03 Aligned_cols=149 Identities=13% Similarity=0.171 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHH----HHHHHhc
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQ----DEAVKFG 270 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~----~~~~k~~ 270 (703)
...+..|..++.+++..+-+++.++.|+|||+.++..++..+.... ..+++|+-|..+.-+.+- +.-.|+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-----~~kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-----YDKIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS------SEEEEEE-S--TT----SS---------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-----CcEEEEEecCCCCccccccCCCCHHHHHH
Confidence 3567899999999997777888899999999999988888876622 238888888765422110 0000110
Q ss_pred CCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCC
Q 005313 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350 (703)
Q Consensus 271 ~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~ 350 (703)
....- +.-.............+.....|-+.....+ +...++ -.+||||||+.+ -..+++.++..+..
T Consensus 78 p~~~p-~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i------RGrt~~-~~~iIvDEaQN~----t~~~~k~ilTR~g~ 145 (205)
T PF02562_consen 78 PYLRP-IYDALEELFGKEKLEELIQNGKIEIEPLAFI------RGRTFD-NAFIIVDEAQNL----TPEELKMILTRIGE 145 (205)
T ss_dssp TTTHH-HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG------TT--B--SEEEEE-SGGG------HHHHHHHHTTB-T
T ss_pred HHHHH-HHHHHHHHhChHhHHHHhhcCeEEEEehhhh------cCcccc-ceEEEEecccCC----CHHHHHHHHcccCC
Confidence 00000 0000000001111222222234444443222 122232 378999999987 46788999999998
Q ss_pred CceEEEEecc
Q 005313 351 RRQTLMYTAT 360 (703)
Q Consensus 351 ~~q~L~lSAT 360 (703)
+.+++++.-.
T Consensus 146 ~skii~~GD~ 155 (205)
T PF02562_consen 146 GSKIIITGDP 155 (205)
T ss_dssp T-EEEEEE--
T ss_pred CcEEEEecCc
Confidence 8888876654
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.21 E-value=2.7e-05 Score=78.46 Aligned_cols=152 Identities=22% Similarity=0.233 Sum_probs=97.8
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc---CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQ---SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVL 250 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~---grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vL 250 (703)
..|+....|..++=++. .-..+++.|.++...+.+ +++.+.+.-||.|||.+ ++|++..+.... ...+.
T Consensus 3 ~~w~p~~~P~wLl~E~e--~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg-----~~Lvr 74 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE--SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG-----SRLVR 74 (229)
T ss_pred CCCCchhChHHHHHHHH--cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC-----CcEEE
Confidence 35666777888877776 345789999999999886 47899999999999976 667777665422 23677
Q ss_pred EEcCcHHHHHHHHHHHHH-hcCCCCceEEEeeCC--CCCC-ch---h----hhhcCCCcEEEECHHHHHHHHHhc-----
Q 005313 251 VLSPTRELATQIQDEAVK-FGKSSRISCTCLYGG--APKG-PQ---L----KDIDRGVDIVVATPGRLNDILEMR----- 314 (703)
Q Consensus 251 Il~PtreLa~Q~~~~~~k-~~~~~~i~v~~~~gg--~~~~-~~---~----~~l~~g~dIlV~Tp~~L~~~l~~~----- 314 (703)
+++| ++|..|..+.++. ++...+-.+..+-=. .... .. + +...+.-.|+++||+.++.+....
T Consensus 75 viVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 8888 5899998888765 333333333332211 1111 11 1 122234579999999987654211
Q ss_pred --cc-----------cccCcccEEEeccccccc
Q 005313 315 --RI-----------SLNQVSYLVLDEADRMLD 334 (703)
Q Consensus 315 --~~-----------~l~~~~~IViDEaH~ml~ 334 (703)
.. .+++...=|+||+|..+.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 10 123344579999998754
No 185
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.07 E-value=4.5e-05 Score=85.31 Aligned_cols=75 Identities=23% Similarity=0.205 Sum_probs=59.3
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 190 HNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 190 ~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
...++.++..-|..|+.++|+..-.||++|+|+|||.+..-.+ .++.+. ...++||++|+..-+.|+.+.+.+.
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IV-yhl~~~-----~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIV-YHLARQ-----HAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHH-HHHHHh-----cCCceEEEcccchhHHHHHHHHHhc
Confidence 3446678899999999999999999999999999998654433 344332 2347999999999999999888775
Q ss_pred c
Q 005313 270 G 270 (703)
Q Consensus 270 ~ 270 (703)
+
T Consensus 478 g 478 (935)
T KOG1802|consen 478 G 478 (935)
T ss_pred C
Confidence 3
No 186
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.05 E-value=0.00059 Score=79.96 Aligned_cols=68 Identities=22% Similarity=0.192 Sum_probs=52.5
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 195 SSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
..+.+.|.+|+..++.. ..++|.+|+|+|||.+..-.+...+.. +.++|+++||..-+.++.+.+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46789999999999987 567788999999997544333333322 458999999999999988888763
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.02 E-value=6.4e-05 Score=86.92 Aligned_cols=142 Identities=20% Similarity=0.193 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEE
Q 005313 199 PIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCT 278 (703)
Q Consensus 199 piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~ 278 (703)
++|++|+..++..+-++|.++.|+|||.+.. .++..+....... ...++++++||-.-+..+.+.+..........
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~-~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQ-GKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhcccc-CCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 7999999999999999999999999997532 2333332211111 12479999999888877776665533222110
Q ss_pred EeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHH------hccccccCcccEEEecccccccCCChHHHHHHHHHcCCCc
Q 005313 279 CLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE------MRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 352 (703)
Q Consensus 279 ~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~------~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~ 352 (703)
. .+.....+-..|..+|+.... ........+++||||||-+ ++ ...+..+++.+++..
T Consensus 224 --------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSM-vd---~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASM-VD---LPLMAKLLKALPPNT 287 (586)
T ss_pred --------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEccccc-CC---HHHHHHHHHhcCCCC
Confidence 0 000011233566666654321 1112233679999999985 43 456778888899888
Q ss_pred eEEEEecc
Q 005313 353 QTLMYTAT 360 (703)
Q Consensus 353 q~L~lSAT 360 (703)
++|++.=.
T Consensus 288 rlIlvGD~ 295 (586)
T TIGR01447 288 KLILLGDK 295 (586)
T ss_pred EEEEECCh
Confidence 88877544
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.00 E-value=9.8e-05 Score=85.60 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=90.2
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCce
Q 005313 197 PTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276 (703)
Q Consensus 197 p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~ 276 (703)
..++|++|+...+..+-+||.+++|+|||.+.. .++..+..... ....++++++||-.-+..+.+.+........+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~--~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLAD--GERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcC--CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 358999999999999999999999999997532 22333322111 112478999999988888877665443222110
Q ss_pred EEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHH------hccccccCcccEEEecccccccCCChHHHHHHHHHcCC
Q 005313 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE------MRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350 (703)
Q Consensus 277 v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~------~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~ 350 (703)
..+......-..|..+|+.... ......-.+++|||||+-++ + ...+..++..+++
T Consensus 230 --------------~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~~ 291 (615)
T PRK10875 230 --------------DEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALPP 291 (615)
T ss_pred --------------hhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhccc
Confidence 0000111223455555543321 11122335689999999954 3 4667788889999
Q ss_pred CceEEEEecc
Q 005313 351 RRQTLMYTAT 360 (703)
Q Consensus 351 ~~q~L~lSAT 360 (703)
..++|++.=.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 9988887654
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.95 E-value=3.4e-05 Score=84.18 Aligned_cols=108 Identities=21% Similarity=0.233 Sum_probs=67.5
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhh
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 292 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~ 292 (703)
-+||.+..|||||++++-.+.. +. ....+..+++++....|...+.+.+.+.....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l~----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~------------------- 58 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-LQ----NSEEGKKVLYLCGNHPLRNKLREQLAKKYNPK------------------- 58 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-hh----ccccCCceEEEEecchHHHHHHHHHhhhcccc-------------------
Confidence 3577799999999875543322 21 11124588999999999988887776543000
Q ss_pred hcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC-------ChHHHHHHHHH
Q 005313 293 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-------FEPQIRKIVKE 347 (703)
Q Consensus 293 l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g-------f~~~i~~il~~ 347 (703)
.....+..+..+...+.........+++|||||||+|.+.. ...++..++..
T Consensus 59 ---~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 59 ---LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 01233444555544333233456789999999999998732 23566666665
No 190
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.7e-06 Score=76.52 Aligned_cols=37 Identities=35% Similarity=0.735 Sum_probs=34.1
Q ss_pred CCCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
++-.||+||.-..+.++|..||.|++||..|||+|..
T Consensus 3 ~~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~ 39 (163)
T KOG3259|consen 3 DEEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSG 39 (163)
T ss_pred ccccCCchhheeccccCCCcceeccccchhhccCCCc
Confidence 3447999999999999999999999999999999965
No 191
>PRK10536 hypothetical protein; Provisional
Probab=97.93 E-value=8.8e-05 Score=76.19 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=82.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHH-----------H
Q 005313 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT-----------Q 261 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~-----------Q 261 (703)
++...+..|...+..+.+...+++.+++|+|||+.++..++..+.... -.+++|.-|+.+..+ .
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-----~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-----VDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----eeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 455678899999999998888888899999999887766665543311 236666667644222 1
Q ss_pred HHHHHHHhcCCCCceEEEeeCCCCCCchhhhh-c-CCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChH
Q 005313 262 IQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI-D-RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEP 339 (703)
Q Consensus 262 ~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l-~-~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~ 339 (703)
+.-++.-+...+.. +.+. ..+..+ . ..-.|-|.....+ . ...+ +-++||||||+.+ -..
T Consensus 131 ~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~ym----R--Grtl-~~~~vIvDEaqn~----~~~ 191 (262)
T PRK10536 131 FAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFAYM----R--GRTF-ENAVVILDEAQNV----TAA 191 (262)
T ss_pred HHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHHHh----c--CCcc-cCCEEEEechhcC----CHH
Confidence 11111111111000 0011 111111 1 1123555543322 2 2223 2378999999976 357
Q ss_pred HHHHHHHHcCCCceEEEEe
Q 005313 340 QIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 340 ~i~~il~~l~~~~q~L~lS 358 (703)
+++.++..+..+.++|++.
T Consensus 192 ~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHHhhcCCCCEEEEeC
Confidence 8888999998888777654
No 192
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=97.85 E-value=1e-05 Score=55.22 Aligned_cols=30 Identities=37% Similarity=0.736 Sum_probs=28.6
Q ss_pred CCCccccccCCccceEeecCCCCcccccCCC
Q 005313 24 PKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
|.+|+..+|.. |..||+|.+|+.+||++|.
T Consensus 1 p~~W~~~~~~~-g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPD-GRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCC-CCEEEEECCCCCEeCCCCC
Confidence 78999999999 9999999999999999995
No 193
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.0001 Score=81.80 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=72.4
Q ss_pred EEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc-CCCCceEEEeeCCCCC----Cchh
Q 005313 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG-KSSRISCTCLYGGAPK----GPQL 290 (703)
Q Consensus 216 v~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~-~~~~i~v~~~~gg~~~----~~~~ 290 (703)
..++||||||++..-.|+.+..+.. ...|+.|....+++....-+..-. ...-+.-...+++... -...
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~f 75 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNF 75 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeeccc
Confidence 3578999999986665655554422 257777776666554433221100 0000000111111110 0111
Q ss_pred hhhcCCCcEEEECHHHHHHHHHhc---ccc---ccCcc-cEEEecccccccCC-------------ChHHHHHHHHHcCC
Q 005313 291 KDIDRGVDIVVATPGRLNDILEMR---RIS---LNQVS-YLVLDEADRMLDMG-------------FEPQIRKIVKEVPA 350 (703)
Q Consensus 291 ~~l~~g~dIlV~Tp~~L~~~l~~~---~~~---l~~~~-~IViDEaH~ml~~g-------------f~~~i~~il~~l~~ 350 (703)
........|+++|.+.|...+... .+. +.+.. +++-|||||+-... ++..+...++ -.+
T Consensus 76 sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~nk 154 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QNK 154 (812)
T ss_pred CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cCC
Confidence 122345789999999998776532 222 33344 45779999975321 2222211122 234
Q ss_pred CceEEEEeccCcH
Q 005313 351 RRQTLMYTATWPR 363 (703)
Q Consensus 351 ~~q~L~lSAT~p~ 363 (703)
+.-+|.+|||+|+
T Consensus 155 d~~~lef~at~~k 167 (812)
T COG3421 155 DNLLLEFSATIPK 167 (812)
T ss_pred CceeehhhhcCCc
Confidence 4557889999984
No 194
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.81 E-value=0.00092 Score=81.11 Aligned_cols=124 Identities=20% Similarity=0.142 Sum_probs=76.9
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 005313 195 SSPTPIQAQSWPIALQSRD-IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grd-vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~ 273 (703)
..+++-|.+++..++.+++ ++|.+..|+|||.+ +-.++..+.. .+.+|+.++||-.-+..+.+ ..
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~------~G~~V~~~ApTGkAA~~L~e-------~t 410 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA------AGYEVRGAALSGIAAENLEG-------GS 410 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH------cCCeEEEecCcHHHHHHHhh-------cc
Confidence 3689999999999998765 56779999999975 3333333332 25689999999765544332 12
Q ss_pred CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHc-CCCc
Q 005313 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARR 352 (703)
Q Consensus 274 ~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l-~~~~ 352 (703)
++. -.|..+|+.-+......+...++|||||+-++. ...+..++... +...
T Consensus 411 Gi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~ga 462 (988)
T PRK13889 411 GIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAGA 462 (988)
T ss_pred Ccc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCCC
Confidence 221 123333322122223345677899999999553 34555666543 4566
Q ss_pred eEEEEecc
Q 005313 353 QTLMYTAT 360 (703)
Q Consensus 353 q~L~lSAT 360 (703)
++|++.=+
T Consensus 463 rvVLVGD~ 470 (988)
T PRK13889 463 KVVLVGDP 470 (988)
T ss_pred EEEEECCH
Confidence 77776554
No 195
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.81 E-value=0.00025 Score=84.20 Aligned_cols=126 Identities=18% Similarity=0.127 Sum_probs=79.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..+++-|++|+..+...+-+++.++.|+|||.+. -.++..+.... ....+++++||-.-+..+.+.. +
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~----~~~~v~l~ApTg~AA~~L~e~~-------g 389 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG----GLLPVGLAAPTGRAAKRLGEVT-------G 389 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC----CCceEEEEeCchHHHHHHHHhc-------C
Confidence 5789999999999998888899999999999643 22333333211 0147889999977776544321 1
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh-----ccccccCcccEEEecccccccCCChHHHHHHHHHcC
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-----RRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 349 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~-----~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~ 349 (703)
+. ..|..+|+..... ..-.....++||||||+++ + ...+..++..++
T Consensus 390 ~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMv-d---~~~~~~Ll~~~~ 441 (720)
T TIGR01448 390 LT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMM-D---TWLALSLLAALP 441 (720)
T ss_pred Cc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccC-C---HHHHHHHHHhCC
Confidence 11 1222222221100 0011235789999999965 3 456677788888
Q ss_pred CCceEEEEecc
Q 005313 350 ARRQTLMYTAT 360 (703)
Q Consensus 350 ~~~q~L~lSAT 360 (703)
...++|++--+
T Consensus 442 ~~~rlilvGD~ 452 (720)
T TIGR01448 442 DHARLLLVGDT 452 (720)
T ss_pred CCCEEEEECcc
Confidence 88888886554
No 196
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.79 E-value=4.2e-05 Score=85.29 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHHcCCCE-EEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005313 196 SPTPIQAQSWPIALQSRDI-VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 266 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdv-lv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~ 266 (703)
.+.+-|.+|+..+...+++ ++.+|+|+|||.+....+.+.+.. +.++||++||.+-+..+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHh
Confidence 6778899999999998765 556999999998766555555554 459999999999999988864
No 197
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.79 E-value=0.00011 Score=85.10 Aligned_cols=138 Identities=22% Similarity=0.280 Sum_probs=87.7
Q ss_pred CCcHHHHHHHHHHHc----CCCEEEEecCCChHHHHHHHHHHHHHhhccC----------C-------------------
Q 005313 196 SPTPIQAQSWPIALQ----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN----------D------------------- 242 (703)
Q Consensus 196 ~p~piQ~~ai~~il~----grdvlv~ApTGsGKTla~llp~l~~l~~~~~----------~------------------- 242 (703)
+||+.|...+..++. ..+.++..|||+|||++.|-..|.+...... .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 678899888766664 4688999999999999877666655433220 0
Q ss_pred --C----CCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEE------Eee---------------------------CC
Q 005313 243 --P----RLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCT------CLY---------------------------GG 283 (703)
Q Consensus 243 --~----~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~------~~~---------------------------gg 283 (703)
+ ..-|++.+-+-|-.-..|+.+++++......+.+. |+. ..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f~~ 180 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHFYK 180 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccccc
Confidence 0 01357777777777788999999887654222110 111 00
Q ss_pred -CCC----------Cch------------------hhhhcCCCcEEEECHHHHHHHHHhcc--ccccCcccEEEeccccc
Q 005313 284 -APK----------GPQ------------------LKDIDRGVDIVVATPGRLNDILEMRR--ISLNQVSYLVLDEADRM 332 (703)
Q Consensus 284 -~~~----------~~~------------------~~~l~~g~dIlV~Tp~~L~~~l~~~~--~~l~~~~~IViDEaH~m 332 (703)
... --+ -+.+...+|||+|-+..|+|-.-++. +++ .=.+|||||||.|
T Consensus 181 ~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~L-knsIVIfDEAHNi 259 (945)
T KOG1132|consen 181 IVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDL-KNSIVIFDEAHNI 259 (945)
T ss_pred cccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccc-cccEEEEeccccH
Confidence 000 000 12334558899999999988776554 333 2368999999987
Q ss_pred cc
Q 005313 333 LD 334 (703)
Q Consensus 333 l~ 334 (703)
.+
T Consensus 260 Ed 261 (945)
T KOG1132|consen 260 ED 261 (945)
T ss_pred HH
Confidence 54
No 198
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.54 E-value=0.0077 Score=73.81 Aligned_cols=136 Identities=18% Similarity=0.145 Sum_probs=81.0
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHH
Q 005313 182 PPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 260 (703)
Q Consensus 182 ~~~l~~~l~~~g~~~p~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~ 260 (703)
++..++..... -..+++-|.+++..+... +-++|++..|+|||.+ +-.+...+.. .+.+|+.++||-.-+.
T Consensus 368 ~~~~l~a~~~~-~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~------~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 368 REAVLAATFAR-HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA------AGYRVVGGALAGKAAE 439 (1102)
T ss_pred CHHHHHHHHhc-CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH------cCCeEEEEcCcHHHHH
Confidence 34444433332 247999999999988654 4567789999999964 3333333332 2558999999966665
Q ss_pred HHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHH
Q 005313 261 QIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQ 340 (703)
Q Consensus 261 Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~ 340 (703)
.+.+. .++.. .|..+|+.........+...++||||||.++ + ...
T Consensus 440 ~L~e~-------~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv-~---~~~ 484 (1102)
T PRK13826 440 GLEKE-------AGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMV-A---SRQ 484 (1102)
T ss_pred HHHHh-------hCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccC-C---HHH
Confidence 54322 22221 2333332111122234566789999999954 3 355
Q ss_pred HHHHHHHcC-CCceEEEEecc
Q 005313 341 IRKIVKEVP-ARRQTLMYTAT 360 (703)
Q Consensus 341 i~~il~~l~-~~~q~L~lSAT 360 (703)
+..++.... ...++|++.=+
T Consensus 485 m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 485 MALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHhcCCEEEEECCH
Confidence 566666654 45677776554
No 199
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.50 E-value=0.0018 Score=77.32 Aligned_cols=122 Identities=21% Similarity=0.160 Sum_probs=73.8
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 005313 195 SSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~ 273 (703)
..+++-|++|+..++.. +-++|.++.|+|||.+. -.++..+.. .+.++++++||-.-+..+.+. +
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~~-------~ 416 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA------AGYRVIGAALSGKAAEGLQAE-------S 416 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh------CCCeEEEEeCcHHHHHHHHhc-------c
Confidence 36899999999999885 55678899999999642 223333322 245899999997665554321 2
Q ss_pred CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHH-cCCCc
Q 005313 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE-VPARR 352 (703)
Q Consensus 274 ~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~-l~~~~ 352 (703)
++. -.|..+|...+......+...++||||||-++. ...+..++.. .....
T Consensus 417 g~~------------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~----~~~~~~Ll~~~~~~~~ 468 (744)
T TIGR02768 417 GIE------------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVG----SRQMARVLKEAEEAGA 468 (744)
T ss_pred CCc------------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCC----HHHHHHHHHHHHhcCC
Confidence 221 123333322122223335678999999999553 2344455553 23456
Q ss_pred eEEEEe
Q 005313 353 QTLMYT 358 (703)
Q Consensus 353 q~L~lS 358 (703)
++|++.
T Consensus 469 kliLVG 474 (744)
T TIGR02768 469 KVVLVG 474 (744)
T ss_pred EEEEEC
Confidence 666665
No 200
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.44 E-value=0.00055 Score=79.10 Aligned_cols=44 Identities=7% Similarity=-0.111 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhh
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKR 238 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~ 238 (703)
-.-+.+-++++..++++.++++...|+++||.+..+.++.....
T Consensus 405 gk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~ 448 (1282)
T KOG0921|consen 405 GKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVAN 448 (1282)
T ss_pred cchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHH
Confidence 45688889999999999999999999999998766666655543
No 201
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.41 E-value=0.00067 Score=79.35 Aligned_cols=146 Identities=26% Similarity=0.225 Sum_probs=90.1
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCC-EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCC
Q 005313 169 VPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD-IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGP 247 (703)
Q Consensus 169 ~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grd-vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~ 247 (703)
.|+.+..-....+.+.+.+. -+..+..-|++|+-.++.-+| .+|.+=+|+|||.+....+-..+.. +.
T Consensus 646 ~pP~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~-------gk 714 (1100)
T KOG1805|consen 646 KPPKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL-------GK 714 (1100)
T ss_pred CCchhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc-------CC
Confidence 34445554455566666553 234778899999999888776 5666889999997644333222222 55
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCC-----------------chhhhhcCCCcEEEECHHHHHHH
Q 005313 248 TVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG-----------------PQLKDIDRGVDIVVATPGRLNDI 310 (703)
Q Consensus 248 ~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~-----------------~~~~~l~~g~dIlV~Tp~~L~~~ 310 (703)
+||+.+=|-.-+..+.-.++++. +.+.-+-...... ..++..-....||.||.--+.+.
T Consensus 715 kVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p 790 (1100)
T KOG1805|consen 715 KVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP 790 (1100)
T ss_pred eEEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch
Confidence 89999999888777776666553 2222111111111 11222334467888886555543
Q ss_pred HHhccccccCcccEEEecccccc
Q 005313 311 LEMRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 311 l~~~~~~l~~~~~IViDEaH~ml 333 (703)
+. ....|+|.|||||-+++
T Consensus 791 lf----~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 791 LF----VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred hh----hccccCEEEEccccccc
Confidence 33 34568999999999875
No 202
>PF13245 AAA_19: Part of AAA domain
Probab=97.37 E-value=0.0008 Score=56.34 Aligned_cols=60 Identities=30% Similarity=0.316 Sum_probs=39.6
Q ss_pred HHHHHHcCCC-EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005313 204 SWPIALQSRD-IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 266 (703)
Q Consensus 204 ai~~il~grd-vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~ 266 (703)
+|...+.+.. ++|.+++|+|||.+.+-.+...+... .. . +.++||++|++..++++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-~~-~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-AD-P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-cC-C-CCeEEEECCCHHHHHHHHHHH
Confidence 4443344444 55689999999966544444443211 11 1 458999999999999988877
No 203
>PRK04296 thymidine kinase; Provisional
Probab=97.31 E-value=0.00063 Score=67.57 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=57.3
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhh
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 292 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~ 292 (703)
-.++.+++|+|||..++-.+...... +.+++|+-|..+-- .....+....++..
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~-------g~~v~i~k~~~d~~----~~~~~i~~~lg~~~--------------- 57 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER-------GMKVLVFKPAIDDR----YGEGKVVSRIGLSR--------------- 57 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc-------CCeEEEEecccccc----ccCCcEecCCCCcc---------------
Confidence 35778999999997655433333222 44788886631110 00111111111110
Q ss_pred hcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 293 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 293 l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
..+.+.....+.+.+.. ...++++|||||+|.+- ..++.+++..+.+.-..+++++-
T Consensus 58 ----~~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 58 ----EAIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ----cceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 01223444555555443 34568899999998641 34466677665444445555544
No 204
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.22 E-value=0.0011 Score=70.30 Aligned_cols=123 Identities=17% Similarity=0.066 Sum_probs=76.2
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCce
Q 005313 197 PTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276 (703)
Q Consensus 197 p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~ 276 (703)
+++-|.+++.. ....++|.|..|||||.+.+.-++..+...... ..++|+|+.|+..+.++.+.+.+........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~---~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~ 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVP---PERILVLTFTNAAAQEMRERIRELLEEEQQE 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSST---GGGEEEEESSHHHHHHHHHHHHHHHHHCCHC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCC---hHHheecccCHHHHHHHHHHHHHhcCccccc
Confidence 46789999988 678899999999999988666555555443222 3479999999999999998888754332110
Q ss_pred EEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccc--cCcccEEEeccc
Q 005313 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISL--NQVSYLVLDEAD 330 (703)
Q Consensus 277 v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l--~~~~~IViDEaH 330 (703)
. ............-..+.|.|.+.+...+....... -.-.+-|+|+..
T Consensus 76 ~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 S------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp C------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 00001111122235789999998876443322221 123567888877
No 205
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.21 E-value=0.0013 Score=78.92 Aligned_cols=153 Identities=17% Similarity=0.080 Sum_probs=93.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhc-----------cCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEE
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRC-----------RNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTC 279 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~-----------~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~ 279 (703)
++++++.-.+|.|||..-+...+..+.+. ..+...-...|||||. ++..||.+++.+..... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 46788889999999987665544332211 1112223468999995 89999999999987765 66666
Q ss_pred eeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc--------------cc----c--CcccEEEecccccccCCChH
Q 005313 280 LYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI--------------SL----N--QVSYLVLDEADRMLDMGFEP 339 (703)
Q Consensus 280 ~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~--------------~l----~--~~~~IViDEaH~ml~~gf~~ 339 (703)
..|-.............+|||++|+..|..-+.+... .+ - .+=-|+||||+++ .. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMv-es-ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMV-ES-SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhh-cc-hHH
Confidence 5553322111111122489999999999765543210 00 0 1123899999954 43 345
Q ss_pred HHHHHHHHcCCCceEEEEeccCcHHHHHH
Q 005313 340 QIRKIVKEVPARRQTLMYTATWPREVRKI 368 (703)
Q Consensus 340 ~i~~il~~l~~~~q~L~lSAT~p~~v~~l 368 (703)
...+.+..++.. ..-..|.|+-..+.++
T Consensus 530 ~~a~M~~rL~~i-n~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 530 AAAEMVRRLHAI-NRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHhhhh-ceeeecCCchhhhhhh
Confidence 555556566543 3578899965544443
No 206
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.09 E-value=0.0057 Score=56.32 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.1
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
++.+++.+++|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999643
No 207
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.07 E-value=0.002 Score=59.18 Aligned_cols=19 Identities=37% Similarity=0.305 Sum_probs=12.6
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
++.+++.+++|+|||....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4567889999999997543
No 208
>PRK08181 transposase; Validated
Probab=97.06 E-value=0.0059 Score=63.90 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=66.0
Q ss_pred cHHHHHHH----HHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 005313 198 TPIQAQSW----PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273 (703)
Q Consensus 198 ~piQ~~ai----~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~ 273 (703)
...|..++ .++..++++++++|+|+|||..+...+...+.. +.+++++ +..+|+.++......
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~-~~~~L~~~l~~a~~~----- 155 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFT-RTTDLVQKLQVARRE----- 155 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeee-eHHHHHHHHHHHHhC-----
Confidence 34444444 244567899999999999996433222222222 3355554 445676665432100
Q ss_pred CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCC-hHHHHHHHHHcCCCc
Q 005313 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF-EPQIRKIVKEVPARR 352 (703)
Q Consensus 274 ~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf-~~~i~~il~~l~~~~ 352 (703)
.+.+.+++ .+.++++|||||++.+....+ ...+..++.......
T Consensus 156 ----------------------------~~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~ 200 (269)
T PRK08181 156 ----------------------------LQLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERR 200 (269)
T ss_pred ----------------------------CcHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC
Confidence 01112222 134678899999997543222 234555555433345
Q ss_pred eEEEEeccCcHHHHH
Q 005313 353 QTLMYTATWPREVRK 367 (703)
Q Consensus 353 q~L~lSAT~p~~v~~ 367 (703)
.+|+.|...+.+...
T Consensus 201 s~IiTSN~~~~~w~~ 215 (269)
T PRK08181 201 SILITANQPFGEWNR 215 (269)
T ss_pred CEEEEcCCCHHHHHH
Confidence 677777776655443
No 209
>PRK06526 transposase; Provisional
Probab=97.04 E-value=0.0015 Score=67.85 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=60.3
Q ss_pred HHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCC
Q 005313 206 PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAP 285 (703)
Q Consensus 206 ~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~ 285 (703)
..+..+.++++++|+|+|||..+...+...+.. +.+++++.. .+|+.++.... .
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~-------g~~v~f~t~-~~l~~~l~~~~----~-------------- 146 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQA-------GHRVLFATA-AQWVARLAAAH----H-------------- 146 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHC-------CCchhhhhH-HHHHHHHHHHH----h--------------
Confidence 455567899999999999997544333332222 335655433 34544432210 0
Q ss_pred CCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC-ChHHHHHHHHHcCCCceEEEEeccCcHH
Q 005313 286 KGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPARRQTLMYTATWPRE 364 (703)
Q Consensus 286 ~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g-f~~~i~~il~~l~~~~q~L~lSAT~p~~ 364 (703)
..+.. +.+. .+..+++|||||+|.+.... -...+..++...-....+|+.|...+..
T Consensus 147 ---------------~~~~~---~~l~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 147 ---------------AGRLQ---AELV----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ---------------cCcHH---HHHH----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 00111 1111 13457899999999753221 1223444554332334588888887654
Q ss_pred HH
Q 005313 365 VR 366 (703)
Q Consensus 365 v~ 366 (703)
..
T Consensus 205 w~ 206 (254)
T PRK06526 205 WG 206 (254)
T ss_pred HH
Confidence 43
No 210
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.99 E-value=0.00024 Score=82.07 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHHHHHHHHh---cCCCcEEEEcccccc
Q 005313 405 KHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFR---AGRSPVLVATDVAAR 480 (703)
Q Consensus 405 k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~~vl~~F~---~G~~~ILVaTdv~~~ 480 (703)
|...|...++.. ..+++++||...+...+.+..++........+.|..+..+|..++..|. .....+|++|...+.
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~ 695 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGL 695 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccC
Confidence 334444444443 5678999999999999999999986668888999999999999999998 234557888876543
No 211
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.98 E-value=0.005 Score=67.74 Aligned_cols=74 Identities=14% Similarity=0.056 Sum_probs=48.2
Q ss_pred CCCCCcHHHHHHHHHHH----cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005313 193 GFSSPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il----~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k 268 (703)
.|...+|-|-+=+-.+. .+-+.|+.+|+|+|||.+.|-.++.+....+.. ..++++.+-|..-++....+++.
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~---~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE---HRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcc---cceEEEecCcchHHHHHHHHHHH
Confidence 35567787877665444 345789999999999988766666665554332 23677777666555555555544
Q ss_pred h
Q 005313 269 F 269 (703)
Q Consensus 269 ~ 269 (703)
+
T Consensus 90 l 90 (755)
T KOG1131|consen 90 L 90 (755)
T ss_pred H
Confidence 3
No 212
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.97 E-value=0.033 Score=73.02 Aligned_cols=235 Identities=11% Similarity=0.128 Sum_probs=121.1
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 005313 196 SPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273 (703)
Q Consensus 196 ~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~ 273 (703)
.+++-|.+++..++.. +-.+|.+..|+|||.+ +-.++..+.. .+.+|++++||-.-+.++.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~~g~~A--- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE------QGYEIQIITAGSLSAQELRQKIPRLA--- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHhcchh---
Confidence 6889999999999886 4567779999999964 2333333322 25689999999876666554421110
Q ss_pred CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHc-CCCc
Q 005313 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARR 352 (703)
Q Consensus 274 ~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l-~~~~ 352 (703)
..+ ...+..+.. ..-..|...|+ .....+...++||||||-++. ...+..|+... +...
T Consensus 499 ----~Ti------~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 499 ----STF------ITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNS 558 (1960)
T ss_pred ----hhH------HHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCC
Confidence 000 000111110 11122333332 122334567899999999652 45666677655 4677
Q ss_pred eEEEEecc--Cc----HHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHH-HHHhcCCCCeEEEE
Q 005313 353 QTLMYTAT--WP----REVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ-ILRSQEPGSKIIVF 425 (703)
Q Consensus 353 q~L~lSAT--~p----~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~-ll~~~~~~~kvLVF 425 (703)
++|++.=+ ++ -.+..++...-.. .+.+..... ....+ .+...........+.. ++.......+++|+
T Consensus 559 rvVlvGD~~QL~sV~aG~~f~~L~~~gv~--t~~l~~i~r--q~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 559 KLILLNDSAQRQGMSAGSAIDLLKEGGVT--TYAWVDTKQ--QKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred EEEEEcChhhcCccccchHHHHHHHCCCc--EEEeecccc--cCcce--eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 88887665 11 1222222221111 111111100 00011 1111122222223333 33323344568999
Q ss_pred cCCHHHHHHHHHHHhcCC-----------ceeEe-cCCCCHHHHHHHHHHHhcC
Q 005313 426 CSTKKMCDQLARNLTRQF-----------GAAAI-HGDKSQSERDYVLNQFRAG 467 (703)
Q Consensus 426 ~~s~~~a~~la~~L~~~~-----------~~~~l-hg~~~~~eR~~vl~~F~~G 467 (703)
..+.++...|...++..+ ....| -..++..++... ..|+.|
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 999888888887775422 12222 235677777643 555554
No 213
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.0049 Score=74.00 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=28.5
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
..+++|||||+|+|-.. ....|.++++..+....+|+++
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 56889999999987543 3445667777777777666665
No 214
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.92 E-value=0.004 Score=66.21 Aligned_cols=146 Identities=20% Similarity=0.244 Sum_probs=84.2
Q ss_pred CCCCCcHHHHHHHHHHHcCC--CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHH----HHH
Q 005313 193 GFSSPTPIQAQSWPIALQSR--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQ----DEA 266 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~gr--dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~----~~~ 266 (703)
|+....-.|.-|+..++... =|.+.++.|||||+-+|.+.+....... ...++||.=|+..+-+.+- .+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~----~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK----RYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh----hhceEEEecCCcCcccccCcCCCchh
Confidence 66666778999999988764 3556689999999888877776654322 1237888778765543220 000
Q ss_pred HHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccC----------cccEEEecccccccCC
Q 005313 267 VKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQ----------VSYLVLDEADRMLDMG 336 (703)
Q Consensus 267 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~----------~~~IViDEaH~ml~~g 336 (703)
.|...+..- ..+.+..+. ..-=++.+.|..++....+.+.. -.+||||||+.+
T Consensus 301 eKm~PWmq~----------i~DnLE~L~---~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---- 363 (436)
T COG1875 301 EKMGPWMQA----------IFDNLEVLF---SPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---- 363 (436)
T ss_pred hhccchHHH----------HHhHHHHHh---cccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc----
Confidence 011000000 000011110 11112234454454444333222 258999999987
Q ss_pred ChHHHHHHHHHcCCCceEEEEec
Q 005313 337 FEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 337 f~~~i~~il~~l~~~~q~L~lSA 359 (703)
-..+++.|+....+..+++++.-
T Consensus 364 TpheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 364 TPHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred CHHHHHHHHHhccCCCEEEEcCC
Confidence 46789999999998888877553
No 215
>PRK14974 cell division protein FtsY; Provisional
Probab=96.91 E-value=0.012 Score=63.46 Aligned_cols=130 Identities=21% Similarity=0.260 Sum_probs=73.3
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc---HHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCch
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT---RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 289 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt---reLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~ 289 (703)
-+++++++|+|||.+..-.+. .+.. .+.+++++... ..-..|+......+ ++.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~-~l~~------~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~----- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAY-YLKK------NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGA----- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HHHH------cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCC-----
Confidence 366779999999975443332 2222 13356555532 34555655555443 33322111110
Q ss_pred hhhhcCCCcEEEECHHH-HHHHHHhccccccCcccEEEecccccc-cCCChHHHHHHHHHcCCCceEEEEeccCcHHHHH
Q 005313 290 LKDIDRGVDIVVATPGR-LNDILEMRRISLNQVSYLVLDEADRML-DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRK 367 (703)
Q Consensus 290 ~~~l~~g~dIlV~Tp~~-L~~~l~~~~~~l~~~~~IViDEaH~ml-~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~ 367 (703)
.|.. +.+.+... ....+++||||++.++. +......+.++...+.+...++.++||...+...
T Consensus 206 -------------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~ 270 (336)
T PRK14974 206 -------------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE 270 (336)
T ss_pred -------------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH
Confidence 1111 22222221 12456899999999875 3335566777777777888889999998766666
Q ss_pred HHHHhh
Q 005313 368 IAADLL 373 (703)
Q Consensus 368 l~~~~l 373 (703)
.+..|.
T Consensus 271 ~a~~f~ 276 (336)
T PRK14974 271 QAREFN 276 (336)
T ss_pred HHHHHH
Confidence 565553
No 216
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.017 Score=63.64 Aligned_cols=130 Identities=13% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEE-cCc-HHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCch
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL-SPT-RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 289 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl-~Pt-reLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~ 289 (703)
+.+++++|||+|||.+..-.+..+...... .+.+|.++ +.+ |.-+.+ +++.++...++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~---~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~----------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD---KSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVK----------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc---CCCeEEEEeccCccHHHHH---HHHHHhhcCCcceE-----------
Confidence 357788999999998764333222221110 12344444 433 333322 24445444444332
Q ss_pred hhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC-ChHHHHHHHHHcCCC-ceEEEEeccCcHH-HH
Q 005313 290 LKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPAR-RQTLMYTATWPRE-VR 366 (703)
Q Consensus 290 ~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g-f~~~i~~il~~l~~~-~q~L~lSAT~p~~-v~ 366 (703)
++-++..+...+.. +.++++||||++.++.... ....+.+++....+. ..+|.+|||.... +.
T Consensus 238 ----------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 238 ----------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ----------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 12234445444432 4578999999999875321 123444555544433 4678999997533 34
Q ss_pred HHHHHh
Q 005313 367 KIAADL 372 (703)
Q Consensus 367 ~l~~~~ 372 (703)
+.+..+
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 444444
No 217
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.88 E-value=0.0094 Score=56.19 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHhcCC-CcEEEEcccccccCCCCC--ccEEEEecCCCC-----------------------------
Q 005313 451 DKSQSERDYVLNQFRAGR-SPVLVATDVAARGLDIKD--IRVVVNYDFPTG----------------------------- 498 (703)
Q Consensus 451 ~~~~~eR~~vl~~F~~G~-~~ILVaTdv~~~GIDIp~--v~~VI~~d~P~s----------------------------- 498 (703)
.....+...+++.|++.. ..||+++..+++|||+++ ++.||...+|.-
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 344446788888898654 379999988999999997 567888887741
Q ss_pred --HHHHHHHHhccCCCCCccEEEEEEec
Q 005313 499 --VEDYVHRIGRTGRAGATGVAYTFFGD 524 (703)
Q Consensus 499 --~~~yiQriGRagR~G~~g~~i~~~~~ 524 (703)
.....|.+||+-|..++--++++++.
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEEec
Confidence 11345889999998766555555543
No 218
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.74 E-value=0.0049 Score=64.23 Aligned_cols=64 Identities=22% Similarity=0.465 Sum_probs=53.0
Q ss_pred HHHHHHhcCCCcEEEEcccccccCCCCC--------ccEEEEecCCCCHHHHHHHHhccCCCCCc-cEEEEEE
Q 005313 459 YVLNQFRAGRSPVLVATDVAARGLDIKD--------IRVVVNYDFPTGVEDYVHRIGRTGRAGAT-GVAYTFF 522 (703)
Q Consensus 459 ~vl~~F~~G~~~ILVaTdv~~~GIDIp~--------v~~VI~~d~P~s~~~yiQriGRagR~G~~-g~~i~~~ 522 (703)
...+.|.+|+..|+|.+++.+.||.+.. -++-|.+.+||+.+..+|.+||++|.++. ...|.++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 4466899999999999999999999874 23567889999999999999999999974 3444444
No 219
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.73 E-value=0.01 Score=56.04 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCC---cEEEEccc--ccccCCCCC--ccEEEEecCCC----CH-------------------------
Q 005313 456 ERDYVLNQFRAGRS---PVLVATDV--AARGLDIKD--IRVVVNYDFPT----GV------------------------- 499 (703)
Q Consensus 456 eR~~vl~~F~~G~~---~ILVaTdv--~~~GIDIp~--v~~VI~~d~P~----s~------------------------- 499 (703)
+...+++.|++... .||+++.- +++|||+++ ++.||...+|. ++
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44678888886543 58888876 999999997 67899888774 11
Q ss_pred --HHHHHHHhccCCCCCccEEEEEEec
Q 005313 500 --EDYVHRIGRTGRAGATGVAYTFFGD 524 (703)
Q Consensus 500 --~~yiQriGRagR~G~~g~~i~~~~~ 524 (703)
....|.+||+-|...+--++++++.
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEec
Confidence 1235889999999776666666654
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.71 E-value=0.0035 Score=57.13 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=24.2
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 258 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreL 258 (703)
+..+++.+|+|+|||...... +..+.. . ...++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~~~---~---~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-ARELGP---P---GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HhccCC---C---CCCEEEECCEEcc
Confidence 457889999999999754322 222211 0 1247777776443
No 221
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.56 E-value=0.012 Score=70.35 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=72.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..|++-|++++.. ....++|.|..|||||.+...-+...+...... ...+|+|+-|+..|.++.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~---p~~IL~lTFTnkAA~em~~Rl~~~~~~~- 76 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENAS---PHSIMAVTFTNKAAAEMRHRIGALLGTS- 76 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCC---HHHeEeeeccHHHHHHHHHHHHHHhccc-
Confidence 3588999999865 346899999999999987544443333321112 2379999999999999999888864310
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcc---ccccCcccEEEecccc
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR---ISLNQVSYLVLDEADR 331 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~---~~l~~~~~IViDEaH~ 331 (703)
...+.|+|.+.|...+.... ..+ .-.+-|+|+.+.
T Consensus 77 ---------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ---------------------ARGMWIGTFHGLAHRLLRAHHLDAGL-PQDFQILDSDDQ 114 (715)
T ss_pred ---------------------ccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 02578999998865433221 111 123567888764
No 222
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.045 Score=59.83 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=68.9
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC-c-H-HHHHHHHHHHHHhcCCCCceEEEeeCCCCCCc
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP-T-R-ELATQIQDEAVKFGKSSRISCTCLYGGAPKGP 288 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P-t-r-eLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~ 288 (703)
+.++++++||+|||......+...... +.++.++.. + | ..+.|+..... ..++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-------GkkVglI~aDt~RiaAvEQLk~yae----~lgipv----------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-------KKTVGFITTDHSRIGTVQQLQDYVK----TIGFEV----------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-------CCcEEEEecCCcchHHHHHHHHHhh----hcCCcE-----------
Confidence 456788999999997655443333211 234544443 3 2 34445443322 222211
Q ss_pred hhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC-ChHHHHHHHHHcCCCceEEEEeccCc-HHHH
Q 005313 289 QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPARRQTLMYTATWP-REVR 366 (703)
Q Consensus 289 ~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g-f~~~i~~il~~l~~~~q~L~lSAT~p-~~v~ 366 (703)
+++.++..|.+.+..-. ...++++||||-+=+..... ....+..++....+..-+|.+|||.. +++.
T Consensus 300 ----------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~ 368 (436)
T PRK11889 300 ----------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 368 (436)
T ss_pred ----------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHH
Confidence 22346777766554311 11257999999997654221 22334444544445555777998754 4556
Q ss_pred HHHHHh
Q 005313 367 KIAADL 372 (703)
Q Consensus 367 ~l~~~~ 372 (703)
+++..|
T Consensus 369 ~i~~~F 374 (436)
T PRK11889 369 EIITNF 374 (436)
T ss_pred HHHHHh
Confidence 666555
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.53 E-value=0.053 Score=55.94 Aligned_cols=50 Identities=32% Similarity=0.401 Sum_probs=31.8
Q ss_pred ccCcccEEEecccccccCCChH-HHHHHHHH-cCCCceEEEEeccCcHHHHH
Q 005313 318 LNQVSYLVLDEADRMLDMGFEP-QIRKIVKE-VPARRQTLMYTATWPREVRK 367 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~-~i~~il~~-l~~~~q~L~lSAT~p~~v~~ 367 (703)
+..+++|||||++......+.. .+..|+.. +.....+|+.|.--+.++.+
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 4468899999999765443443 33345443 44456788888776655544
No 224
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.51 E-value=0.014 Score=69.99 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=72.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.|++-|++++.. ....++|.|..|||||.+...-+...+...... ...+|+|+-|+..|.++.+.+.++....
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~---p~~IL~lTFT~kAA~Em~~Rl~~~~~~~-- 81 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENAS---PYSIMAVTFTNKAAAEMRHRIEQLLGTS-- 81 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCC---hhHeEeeeccHHHHHHHHHHHHHHhccC--
Confidence 588999999864 346899999999999987554443333321112 2379999999999999999988864310
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcccc-c-cCcccEEEecccc
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS-L-NQVSYLVLDEADR 331 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~-l-~~~~~IViDEaH~ 331 (703)
...+.|+|.+.|...+...... + -.-.+-|+|+.+.
T Consensus 82 --------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 119 (721)
T PRK11773 82 --------------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQ 119 (721)
T ss_pred --------------------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 0257899999886544322111 1 1123567887764
No 225
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.49 E-value=0.019 Score=57.35 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=37.0
Q ss_pred ccCcccEEEeccccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHh
Q 005313 318 LNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 372 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~ 372 (703)
.+++++|+||-+-+... ......+.+++..+.+..-+|.++||...+....+..+
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 35678999999976532 22345667777777777778999999876655544444
No 226
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.47 E-value=0.046 Score=61.14 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=64.7
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHH-hhccCCCCCCCEEEEEc-Cc-HH-HHHHHHHHHHHhcCCCCceEEEeeCCCCC
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHL-KRCRNDPRLGPTVLVLS-PT-RE-LATQIQDEAVKFGKSSRISCTCLYGGAPK 286 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l-~~~~~~~~~g~~vLIl~-Pt-re-La~Q~~~~~~k~~~~~~i~v~~~~gg~~~ 286 (703)
++.+++++|||+|||.+....+.... .. .+.+|.+|. .+ +. ...| ++.++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~------~g~~V~li~~D~~r~~a~eq----L~~~a~~~~vp~--------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY------GKKKVALITLDTYRIGAVEQ----LKTYAKIMGIPV--------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCccHHHHHHH----HHHHHHHhCCce---------
Confidence 34678889999999976553333332 11 122454443 33 22 2233 333332222221
Q ss_pred CchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccccc-CCChHHHHHHHHH-cCCCceEEEEeccCcH-
Q 005313 287 GPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKE-VPARRQTLMYTATWPR- 363 (703)
Q Consensus 287 ~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~-~gf~~~i~~il~~-l~~~~q~L~lSAT~p~- 363 (703)
.++.++..+...+.. +..+++||||.+-+... ......+..++.. ..+...+|+++||...
T Consensus 282 ------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred ------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 223344555554442 34689999999865321 1122345555552 2233557889998764
Q ss_pred HHHHHHHHh
Q 005313 364 EVRKIAADL 372 (703)
Q Consensus 364 ~v~~l~~~~ 372 (703)
.+.+++..|
T Consensus 346 ~l~~~~~~f 354 (424)
T PRK05703 346 DLKDIYKHF 354 (424)
T ss_pred HHHHHHHHh
Confidence 444444444
No 227
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.39 E-value=0.89 Score=53.60 Aligned_cols=72 Identities=15% Similarity=0.320 Sum_probs=51.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh---hhhcC-CCcEEEECHHHHHHHHHhccccccCcc
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
..+||.|+|+.-+.++.+.+.+. ++.+.+++++....... ..+.. ..+||||| +.+. ..+++.+++
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~a-rGIDip~V~ 315 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAA-RGLDVERIS 315 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHh-cCCCcccCC
Confidence 37899999999999988888664 46788888887654432 33333 48899999 3333 467888899
Q ss_pred cEEEec
Q 005313 323 YLVLDE 328 (703)
Q Consensus 323 ~IViDE 328 (703)
+||.-+
T Consensus 316 ~VI~~d 321 (629)
T PRK11634 316 LVVNYD 321 (629)
T ss_pred EEEEeC
Confidence 887533
No 228
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.39 E-value=0.012 Score=69.81 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.+++-|++++.. ....++|.|..|||||.+.+.-+...+...... ..++|+|+-|+..|.++.+.+.+......
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~---p~~IL~lTFT~kAA~em~~Rl~~~l~~~~- 75 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQ---ARHIAAVTFTNKAAREMKERVAQTLGRKE- 75 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCC---HHHeeeEechHHHHHHHHHHHHHHhCccc-
Confidence 478889999865 356788999999999987555444444332222 23799999999999999888877642100
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHH-Hhcccccc-CcccEEEecccc
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDIL-EMRRISLN-QVSYLVLDEADR 331 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l-~~~~~~l~-~~~~IViDEaH~ 331 (703)
...|.|.|.+.|...+ ......+. .-.+-|+|+.+.
T Consensus 76 --------------------~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 76 --------------------ARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred --------------------ccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 0257889988886433 32111111 123556777653
No 229
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.37 E-value=0.028 Score=53.07 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=22.7
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHH
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 258 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreL 258 (703)
+++.+++|+|||..+...+..... .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-------cCCEEEEEECCcch
Confidence 578899999999754332222221 13467777664433
No 230
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.36 E-value=0.017 Score=59.33 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=25.9
Q ss_pred cccEEEecccccccC-CChHHHHHHHHHcCC--CceEEEEeccCcHH
Q 005313 321 VSYLVLDEADRMLDM-GFEPQIRKIVKEVPA--RRQTLMYTATWPRE 364 (703)
Q Consensus 321 ~~~IViDEaH~ml~~-gf~~~i~~il~~l~~--~~q~L~lSAT~p~~ 364 (703)
+++|||||+|.+... .+...+..++..+.. +.++|+.|..+|..
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 478999999987532 234455555555432 33566655555544
No 231
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.35 E-value=0.029 Score=66.33 Aligned_cols=71 Identities=23% Similarity=0.212 Sum_probs=52.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
..+++-|++|+-. ...+++|.|..|||||.+.+--+...+...... +..+|+|+.|+..|..+.+.+.+..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~---~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQ---PEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCC---HHHeEEEeccHHHHHHHHHHHHHhc
Confidence 5789999999854 346789999999999987554443333332111 3489999999999999988887653
No 232
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.018 Score=62.90 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=62.4
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 290 (703)
+..+++++|||+|||......+...+.... ..++.++. +...-.--.+.++.|+...++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G-----~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~------------ 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG-----ASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH------------ 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CCeEEEEe-cccccccHHHHHHHHHHHcCCceE------------
Confidence 356788899999999865443333322210 12444443 222211112333333333333322
Q ss_pred hhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC-ChHHHHHHHHHcCCCceEEEEeccCcHHH-HHH
Q 005313 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPARRQTLMYTATWPREV-RKI 368 (703)
Q Consensus 291 ~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g-f~~~i~~il~~l~~~~q~L~lSAT~p~~v-~~l 368 (703)
.+-++..+...+. .+.+.++|+||++=+..... ....+..+.....+...+|+++||...+. .+.
T Consensus 199 ---------~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 199 ---------AVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ---------ecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 2223333333332 24567899999997542111 12222222222233445889999975544 344
Q ss_pred HHHh
Q 005313 369 AADL 372 (703)
Q Consensus 369 ~~~~ 372 (703)
+..|
T Consensus 266 i~~f 269 (374)
T PRK14722 266 VQAY 269 (374)
T ss_pred HHHH
Confidence 4444
No 233
>PHA02533 17 large terminase protein; Provisional
Probab=96.32 E-value=0.038 Score=63.50 Aligned_cols=148 Identities=11% Similarity=0.017 Sum_probs=83.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.|.|+|++.+..+...+-.++..+=..|||.+..+.++...... .+..+++++|+..-+..+.+.++........
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-----~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-----KDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 68899999998876666667778889999987654444333321 1348999999999888888777654332210
Q ss_pred --eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCC--C
Q 005313 276 --SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA--R 351 (703)
Q Consensus 276 --~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~--~ 351 (703)
... +... ......+..+..|.+.|-.. ....=..+.++||||+|.+.+ +...+..+...+.. .
T Consensus 134 l~~~~-i~~~---~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~ 200 (534)
T PHA02533 134 FLQPG-IVEW---NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRS 200 (534)
T ss_pred Hhhcc-eeec---CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCC
Confidence 100 0000 01111224455565544211 111122467899999997643 23334444433332 2
Q ss_pred ceEEEEeccC
Q 005313 352 RQTLMYTATW 361 (703)
Q Consensus 352 ~q~L~lSAT~ 361 (703)
.+++.+|++.
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 3455555553
No 234
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.31 E-value=0.033 Score=58.16 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=17.6
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC
Q 005313 183 PELLREVHNAGFSSPTPIQAQSWPIALQS 211 (703)
Q Consensus 183 ~~l~~~l~~~g~~~p~piQ~~ai~~il~g 211 (703)
-+|++.|+..+|.-+---|...-.++..+
T Consensus 6 ~~lvdslk~l~~qg~~~k~~~lsral~ag 34 (465)
T KOG3973|consen 6 LYLVDSLKALSFQGHCQKQENLSRALMAG 34 (465)
T ss_pred HHHHHHHHHhccCCcccchhhHHHHHHcC
Confidence 46777777777766555555544555443
No 235
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.30 E-value=0.0091 Score=69.85 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=27.3
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEec
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSA 359 (703)
.++++|||||+|+|.... ...+.++++..+++..+|+.|.
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEEC
Confidence 467899999999875443 3455666777666666665553
No 236
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.30 E-value=0.055 Score=59.00 Aligned_cols=131 Identities=17% Similarity=0.221 Sum_probs=73.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 290 (703)
++.+++++|||.|||.+..-.+..+..... .....||-..|--+.. .++++.++...++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~----~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp-------------- 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK----KKKVAIITTDTYRIGA--VEQLKTYADIMGVP-------------- 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc----CcceEEEEeccchhhH--HHHHHHHHHHhCCc--------------
Confidence 567888999999999875433333331111 1124566555432221 23444444444432
Q ss_pred hhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccc-cCCChHHHHHHHHHcCCCceEEEEeccCcH-HHHHH
Q 005313 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML-DMGFEPQIRKIVKEVPARRQTLMYTATWPR-EVRKI 368 (703)
Q Consensus 291 ~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml-~~gf~~~i~~il~~l~~~~q~L~lSAT~p~-~v~~l 368 (703)
-.+|-+|.-|...+. .+.++++|.||=+=+-. |......+..++....+..-.|.+|||.-. +++++
T Consensus 263 -------~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 263 -------LEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred -------eEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 245566666665554 36778999999886532 111334455555555444557889999754 34455
Q ss_pred HHHh
Q 005313 369 AADL 372 (703)
Q Consensus 369 ~~~~ 372 (703)
+..|
T Consensus 332 ~~~f 335 (407)
T COG1419 332 IKQF 335 (407)
T ss_pred HHHh
Confidence 5555
No 237
>PRK08116 hypothetical protein; Validated
Probab=96.28 E-value=0.081 Score=55.46 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=29.4
Q ss_pred ccCcccEEEecccc--cccCCChHHHHHHHHH-cCCCceEEEEeccCcHHHHH
Q 005313 318 LNQVSYLVLDEADR--MLDMGFEPQIRKIVKE-VPARRQTLMYTATWPREVRK 367 (703)
Q Consensus 318 l~~~~~IViDEaH~--ml~~gf~~~i~~il~~-l~~~~q~L~lSAT~p~~v~~ 367 (703)
+...++|||||++. ..++ ....+..|+.. +.....+|+.|...+.++..
T Consensus 176 l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 34568899999963 2222 22334445543 34456688888877766544
No 238
>PRK06921 hypothetical protein; Provisional
Probab=96.28 E-value=0.043 Score=57.48 Aligned_cols=45 Identities=27% Similarity=0.209 Sum_probs=26.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 262 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~ 262 (703)
+..+++.+++|+|||..+. ++...+... .+..++++.. .+|+.++
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~-----~g~~v~y~~~-~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK-----KGVPVLYFPF-VEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh-----cCceEEEEEH-HHHHHHH
Confidence 5679999999999995432 222333221 0345666553 4555543
No 239
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.26 E-value=0.023 Score=59.24 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=3.1
Q ss_pred cCcHHHH
Q 005313 253 SPTRELA 259 (703)
Q Consensus 253 ~PtreLa 259 (703)
||.+||.
T Consensus 85 CPy~eLt 91 (465)
T KOG3973|consen 85 CPYEELT 91 (465)
T ss_pred CchHhhc
Confidence 4444443
No 240
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.26 E-value=0.018 Score=63.14 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHH------HcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH
Q 005313 197 PTPIQAQSWPIA------LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 262 (703)
Q Consensus 197 p~piQ~~ai~~i------l~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~ 262 (703)
|++-|++++..+ ..+..+.+.++-|+|||.. +-++...... .+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~-----~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS-----RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc-----ccceEEEecchHHHHHhc
Confidence 567799998888 5667889999999999964 3333332221 245899999996555444
No 241
>PRK08727 hypothetical protein; Validated
Probab=96.25 E-value=0.018 Score=59.05 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=27.8
Q ss_pred cCcccEEEecccccccCC-ChHHHHHHHHHcC-CCceEEEEeccCcHHHH
Q 005313 319 NQVSYLVLDEADRMLDMG-FEPQIRKIVKEVP-ARRQTLMYTATWPREVR 366 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~g-f~~~i~~il~~l~-~~~q~L~lSAT~p~~v~ 366 (703)
.++++|||||+|.+.... ....+..++..+. ...++|+.|...|.+..
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~ 141 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLA 141 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhh
Confidence 455789999999876432 2233444554433 23456666666665553
No 242
>PRK05642 DNA replication initiation factor; Validated
Probab=96.21 E-value=0.018 Score=59.10 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=26.6
Q ss_pred CcccEEEecccccccC-CChHHHHHHHHHcCCCceEEEEecc-CcH
Q 005313 320 QVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTAT-WPR 363 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~-gf~~~i~~il~~l~~~~q~L~lSAT-~p~ 363 (703)
++++||||++|.+... .+...+..++..+......++++++ .|.
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 5578999999976432 2345566777665543334555555 443
No 243
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.11 Score=55.87 Aligned_cols=64 Identities=16% Similarity=0.356 Sum_probs=34.5
Q ss_pred CcccEEEecccccccC-C----Ch--HHH-HHHHHHc-------CCCceEEEEecc-CcHHHHHHHHHhhcCceeccccc
Q 005313 320 QVSYLVLDEADRMLDM-G----FE--PQI-RKIVKEV-------PARRQTLMYTAT-WPREVRKIAADLLVNPVQVNIGN 383 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~-g----f~--~~i-~~il~~l-------~~~~q~L~lSAT-~p~~v~~l~~~~l~~~~~i~i~~ 383 (703)
--+.|+|||+|.+... | ++ ..+ .+++-++ .....++.+-|| +|-++.+.++.-+...+.|.+.+
T Consensus 304 APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~ 383 (491)
T KOG0738|consen 304 APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPD 383 (491)
T ss_pred CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCC
Confidence 3467999999976532 1 11 111 1222222 223446777777 56666666666655555554433
No 244
>PRK06893 DNA replication initiation factor; Validated
Probab=96.19 E-value=0.017 Score=59.05 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=27.6
Q ss_pred cCcccEEEecccccccC-CChHHHHHHHHHcCC-CceEEEEeccCc
Q 005313 319 NQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPA-RRQTLMYTATWP 362 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~-gf~~~i~~il~~l~~-~~q~L~lSAT~p 362 (703)
.++++|||||+|.+... .+...+..++..+.. ..++|++|++.+
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 45688999999987532 234455555655543 345667777654
No 245
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.10 E-value=0.046 Score=69.35 Aligned_cols=65 Identities=22% Similarity=0.211 Sum_probs=44.3
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH
Q 005313 195 SSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 262 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~ 262 (703)
..+++-|++|+..++.. +-++|.+..|+|||.+.- .++..+..... ..+..++.++||-.-+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~e--~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNMLPE--SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHHhh--ccCceEEEEechHHHHHHH
Confidence 37899999999999965 567888999999997532 12222221111 1245789999997666554
No 246
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.03 E-value=0.029 Score=66.62 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCce
Q 005313 197 PTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276 (703)
Q Consensus 197 p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~ 276 (703)
+++-|++++.. ....++|.|..|||||.+.+--+...+...... ...+|+|+-|+..+.++.+.+.+......
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~---p~~IL~vTFt~~Aa~em~~Rl~~~l~~~~-- 74 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYK---ARNIAAVTFTNKAAREMKERVAKTLGKGE-- 74 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCC---HHHeEEEeccHHHHHHHHHHHHHHhCccc--
Confidence 67889998865 356899999999999987655444444331112 24799999999999999988877543110
Q ss_pred EEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcccc-c-cCcccEEEecccc
Q 005313 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS-L-NQVSYLVLDEADR 331 (703)
Q Consensus 277 v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~-l-~~~~~IViDEaH~ 331 (703)
...|.|.|..+|...+...... + -.-.+-|+||.+.
T Consensus 75 -------------------~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 75 -------------------ARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred -------------------cCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 1358899998886544322110 0 0123457777763
No 247
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.044 Score=58.81 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=72.6
Q ss_pred CCCCcHHHHHHHHHHHc----CC---CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005313 194 FSSPTPIQAQSWPIALQ----SR---DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 266 (703)
Q Consensus 194 ~~~p~piQ~~ai~~il~----gr---dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~ 266 (703)
+..+||||..+|..+.. ++ -+|+.+|.|+||+..+...+-.. .|......+ .|+ .+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L--lC~~~~~~~-----~c~----------~c 64 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV--LASGPDPAA-----AQR----------TR 64 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH--hCCCCCCCC-----cch----------HH
Confidence 35689999999987763 33 47889999999997655322222 232211100 111 12
Q ss_pred HHhc--CCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHH
Q 005313 267 VKFG--KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKI 344 (703)
Q Consensus 267 ~k~~--~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~i 344 (703)
+.+. ...++.++...-..... .....|.|-..-.+.+.+..... ....+++||||||.|... ....+.++
T Consensus 65 ~~~~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p~-~g~~kV~iI~~ae~m~~~-AaNaLLKt 136 (319)
T PRK08769 65 QLIAAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTPQ-YGIAQVVIVDPADAINRA-ACNALLKT 136 (319)
T ss_pred HHHhcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCcc-cCCcEEEEeccHhhhCHH-HHHHHHHH
Confidence 2222 22233322111110000 00012332222223333322211 246789999999998533 35566677
Q ss_pred HHHcCCCceEEEEecc
Q 005313 345 VKEVPARRQTLMYTAT 360 (703)
Q Consensus 345 l~~l~~~~q~L~lSAT 360 (703)
++.-+++..+|++|..
T Consensus 137 LEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 137 LEEPSPGRYLWLISAQ 152 (319)
T ss_pred hhCCCCCCeEEEEECC
Confidence 7777777777777654
No 248
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.96 E-value=0.07 Score=54.20 Aligned_cols=48 Identities=13% Similarity=0.290 Sum_probs=30.2
Q ss_pred ccCcccEEEecccccccCC-ChHHHHHHHHHc-CCCceEEEEeccCcHHH
Q 005313 318 LNQVSYLVLDEADRMLDMG-FEPQIRKIVKEV-PARRQTLMYTATWPREV 365 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~g-f~~~i~~il~~l-~~~~q~L~lSAT~p~~v 365 (703)
+..+++||||.+|.+.... +...+..++..+ ....++|+.|...|.++
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4468899999999876432 234455555554 34567777777776554
No 249
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.92 E-value=0.036 Score=66.49 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=73.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..|++-|++++.. ....++|.|..|||||.+.+.-+...+...... ..++|+|+-|+.-+.++.+.+.++...
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~---P~~IL~lTFT~kAA~em~~Rl~~~~~~-- 75 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVA---PWNILAITFTNKAAREMKERVEKLLGP-- 75 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCC---HHHeeeeeccHHHHHHHHHHHHHHhcc--
Confidence 3588999999975 356899999999999987655444444332222 237999999999999998888776421
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcccc-c-cCcccEEEecccc
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS-L-NQVSYLVLDEADR 331 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~-l-~~~~~IViDEaH~ 331 (703)
. ...+.|+|...|...+...... + -.-.+-|+|+.+.
T Consensus 76 ---------~-----------~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 76 ---------V-----------AEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred ---------c-----------cCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 0 0358899999886544322111 1 1233557888763
No 250
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.91 E-value=0.029 Score=64.70 Aligned_cols=49 Identities=10% Similarity=0.227 Sum_probs=31.3
Q ss_pred ccCcccEEEecccccccCC-ChHHHHHHHHHcCC-CceEEEEeccCcHHHH
Q 005313 318 LNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPA-RRQTLMYTATWPREVR 366 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~g-f~~~i~~il~~l~~-~~q~L~lSAT~p~~v~ 366 (703)
+.++++|||||+|.+.... ....+..+++.+.. ..++|+.|-..|.++.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3457899999999875433 23445556655433 5677776666666554
No 251
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.88 E-value=0.085 Score=67.83 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=74.7
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 195 SSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
..+++-|++|+..++.. +-++|.+..|+|||.+. -.++..+..... ..+..++.++||-.-+.++.+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~--~~~~~V~glAPTgrAAk~L~e-------- 1034 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPE--SERPRVVGLGPTHRAVGEMRS-------- 1034 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhc--ccCceEEEECCcHHHHHHHHh--------
Confidence 36899999999999986 45677899999999652 233333322111 123578999999766655432
Q ss_pred CCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHH----hccccccCcccEEEecccccccCCChHHHHHHHHHc
Q 005313 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE----MRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV 348 (703)
Q Consensus 273 ~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~----~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l 348 (703)
.++. -.|..+|+.... .........++|||||+=++ + ...+..++..+
T Consensus 1035 ~Gi~------------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv-~---~~~m~~Ll~~~ 1086 (1747)
T PRK13709 1035 AGVD------------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMV-G---NTDMARAYALI 1086 (1747)
T ss_pred cCcc------------------------hhhHHHHhcccccccccccCCCCCCcEEEEEccccc-c---HHHHHHHHHhh
Confidence 1221 123333322110 01111234589999999854 3 34556666666
Q ss_pred CC-CceEEEEecc
Q 005313 349 PA-RRQTLMYTAT 360 (703)
Q Consensus 349 ~~-~~q~L~lSAT 360 (703)
+. ..++|++.=+
T Consensus 1087 ~~~garvVLVGD~ 1099 (1747)
T PRK13709 1087 AAGGGRAVSSGDT 1099 (1747)
T ss_pred hcCCCEEEEecch
Confidence 53 5667776554
No 252
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.12 Score=61.24 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=67.0
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc-CcH--HHHHHHHHHHHHhcCCCCceEEEeeCCCCCCch
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS-PTR--ELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 289 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~-Ptr--eLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~ 289 (703)
-+++++|||+|||.++...+..+.... .+.++.++. .+- .-++|+ +.+....++.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~-----G~kkV~lit~Dt~RigA~eQL----~~~a~~~gvpv------------ 245 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVARE-----GADQLALLTTDSFRIGALEQL----RIYGRILGVPV------------ 245 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHc-----CCCeEEEecCcccchHHHHHH----HHHHHhCCCCc------------
Confidence 467789999999987654333332210 012444443 332 133343 33333333221
Q ss_pred hhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccC-CChHHHHHHHHHcCCCceEEEEeccCcH-HHHH
Q 005313 290 LKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPR-EVRK 367 (703)
Q Consensus 290 ~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~-gf~~~i~~il~~l~~~~q~L~lSAT~p~-~v~~ 367 (703)
.++.++..+.+.+.. +.++++|+||=+=+.... .....+..+.....+...+|.++||... .+.+
T Consensus 246 ---------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 246 ---------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred ---------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 223467766666552 446789999988865322 1223333444444556678999999753 3444
Q ss_pred HHHHh
Q 005313 368 IAADL 372 (703)
Q Consensus 368 l~~~~ 372 (703)
++..|
T Consensus 313 i~~~f 317 (767)
T PRK14723 313 VVHAY 317 (767)
T ss_pred HHHHH
Confidence 55555
No 253
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.85 E-value=0.048 Score=61.34 Aligned_cols=50 Identities=8% Similarity=0.265 Sum_probs=30.5
Q ss_pred cCcccEEEecccccccCC-ChHHHHHHHHHc-CCCceEEEEeccCcHHHHHH
Q 005313 319 NQVSYLVLDEADRMLDMG-FEPQIRKIVKEV-PARRQTLMYTATWPREVRKI 368 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~g-f~~~i~~il~~l-~~~~q~L~lSAT~p~~v~~l 368 (703)
..+++|||||+|.+.... ....+..++..+ ....++|+.|.+.|.++..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999875432 233444444433 34566777776667665543
No 254
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.85 E-value=0.0055 Score=59.81 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=52.4
Q ss_pred EEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhc
Q 005313 215 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294 (703)
Q Consensus 215 lv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~ 294 (703)
|+.|+-|-|||.+.-+.+...+.. ...+++|.+|+.+-++.+.+.+.+.....+++....... ........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------EEEE-SS--S-HHHHHCC----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---cccccccc
Confidence 578999999997544433222222 113799999999988888777766554444332000000 00000011
Q ss_pred CCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccC
Q 005313 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 361 (703)
Q Consensus 295 ~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~ 361 (703)
....|-+..|+.+... ....++||||||=.+ -.+.+..++... ..++||.|.
T Consensus 72 ~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~~----~~vv~stTi 123 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRRF----PRVVFSTTI 123 (177)
T ss_dssp -CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEB
T ss_pred ccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhhC----CEEEEEeec
Confidence 2356777777776331 224588999999865 345566664333 256677775
No 255
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.83 E-value=0.059 Score=52.72 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=32.7
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
+++.+++|+|||...+--+...+.. +.++++++. .+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-------g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-------GEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-------CCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6888999999997655434443332 447888765 466777777776663
No 256
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.81 E-value=0.12 Score=60.73 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=89.4
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCC--CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHH
Q 005313 187 REVHNAGFSSPTPIQAQSWPIALQSR--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQD 264 (703)
Q Consensus 187 ~~l~~~g~~~p~piQ~~ai~~il~gr--dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~ 264 (703)
..+..........-|.+.+..++..+ -+++.|.-|=|||.+.-|.+........ ...++|.+|+.+-++.+.+
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-----~~~iiVTAP~~~nv~~Lf~ 279 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-----SVRIIVTAPTPANVQTLFE 279 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-----CceEEEeCCCHHHHHHHHH
Confidence 34554445555556666677777664 4677799999999877665532222211 2489999999999998888
Q ss_pred HHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHH
Q 005313 265 EAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKI 344 (703)
Q Consensus 265 ~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~i 344 (703)
.+.+-....+....+..... ......-.+...|=+.+|.... ..-++||||||=-+ -.+.+.++
T Consensus 280 fa~~~l~~lg~~~~v~~d~~--g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~l 343 (758)
T COG1444 280 FAGKGLEFLGYKRKVAPDAL--GEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHKL 343 (758)
T ss_pred HHHHhHHHhCCccccccccc--cceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHHH
Confidence 77665554443322111110 0000001112345556665442 11578999999866 45677777
Q ss_pred HHHcCCCceEEEEeccC
Q 005313 345 VKEVPARRQTLMYTATW 361 (703)
Q Consensus 345 l~~l~~~~q~L~lSAT~ 361 (703)
+...+ .++||.|+
T Consensus 344 ~~~~~----rv~~sTTI 356 (758)
T COG1444 344 LRRFP----RVLFSTTI 356 (758)
T ss_pred HhhcC----ceEEEeee
Confidence 66543 58888886
No 257
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.017 Score=62.34 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHHcCC----CEEEEecCCChHHHHHHH
Q 005313 196 SPTPIQAQSWPIALQSR----DIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 196 ~p~piQ~~ai~~il~gr----dvlv~ApTGsGKTla~ll 230 (703)
.++|||...|..++... -+|+.+|.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 46899999999888653 468899999999976553
No 258
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.80 E-value=0.016 Score=59.67 Aligned_cols=85 Identities=29% Similarity=0.372 Sum_probs=63.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCC-CCCchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcc
Q 005313 245 LGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGA-PKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 245 ~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~-~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
..|.+||||..-.-|..+...++.|... +..+.-++.-- ...++...+.. .++|.|+||++|..+++...+.++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 3589999999988888888888877321 12222233222 33455666664 589999999999999999999999999
Q ss_pred cEEEeccc
Q 005313 323 YLVLDEAD 330 (703)
Q Consensus 323 ~IViDEaH 330 (703)
+||||--|
T Consensus 204 ~ivlD~s~ 211 (252)
T PF14617_consen 204 RIVLDWSY 211 (252)
T ss_pred EEEEcCCc
Confidence 99999876
No 259
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.77 E-value=0.046 Score=60.82 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCChHHHHHH
Q 005313 197 PTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 197 p~piQ~~ai~~il~grdvlv~ApTGsGKTla~l 229 (703)
+-......+..+..++++++.+++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344556667777789999999999999997653
No 260
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.77 E-value=0.11 Score=58.27 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=34.2
Q ss_pred cccEEEecccccc-cCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHh
Q 005313 321 VSYLVLDEADRML-DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 372 (703)
Q Consensus 321 ~~~IViDEaH~ml-~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~ 372 (703)
.++||||.+-++. +......+..+.....+..-+|.+.|+...+....+..+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 4889999995442 222334455666666677778899998876665555554
No 261
>PRK09183 transposase/IS protein; Provisional
Probab=95.75 E-value=0.058 Score=56.30 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=29.2
Q ss_pred HHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH
Q 005313 207 IALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 262 (703)
Q Consensus 207 ~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~ 262 (703)
.+..+.++++.+|+|+|||..+...+...... +..++++. ..+|..++
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-------G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGYEAVRA-------GIKVRFTT-AADLLLQL 145 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEe-HHHHHHHH
Confidence 35567899999999999996544322222221 34666654 34565544
No 262
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.75 E-value=0.2 Score=52.47 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=70.3
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC-c--HHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCc
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP-T--RELATQIQDEAVKFGKSSRISCTCLYGGAPKGP 288 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P-t--reLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~ 288 (703)
..+++++++|+|||..+.+.+...... +.++.++.- + ...+.||...+... ++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~-------~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~------------- 131 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK-------KKTVGFITTDHSRIGTVQQLQDYVKTI----GF------------- 131 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEecCCCCHHHHHHHHHHhhhc----Cc-------------
Confidence 567888999999998665433332211 234544443 2 25666665443332 22
Q ss_pred hhhhhcCCCcEEE-ECHHHHHHHHHhccccccCcccEEEecccccccC-CChHHHHHHHHHcCCCceEEEEeccC-cHHH
Q 005313 289 QLKDIDRGVDIVV-ATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATW-PREV 365 (703)
Q Consensus 289 ~~~~l~~g~dIlV-~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~-gf~~~i~~il~~l~~~~q~L~lSAT~-p~~v 365 (703)
.+.. .++..|.+.+..- ....++++||||.+=++... .....+.+++....+..-+|.++||. ..+.
T Consensus 132 ---------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 132 ---------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred ---------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 2222 3455555544321 11346899999999765321 12333445555555555578899986 4466
Q ss_pred HHHHHHh
Q 005313 366 RKIAADL 372 (703)
Q Consensus 366 ~~l~~~~ 372 (703)
.+.+..|
T Consensus 202 ~~~~~~f 208 (270)
T PRK06731 202 IEIITNF 208 (270)
T ss_pred HHHHHHh
Confidence 6666665
No 263
>PRK12377 putative replication protein; Provisional
Probab=95.68 E-value=0.096 Score=54.20 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=58.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 290 (703)
..++++.+++|+|||..+.. +...+.. .+..+++ ++..+|+.++...+.. . .
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~------~g~~v~~-i~~~~l~~~l~~~~~~---~-----------~------ 152 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLA------KGRSVIV-VTVPDVMSRLHESYDN---G-----------Q------ 152 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH------cCCCeEE-EEHHHHHHHHHHHHhc---c-----------c------
Confidence 35789999999999964332 2333332 1234544 4556777765544311 0 0
Q ss_pred hhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCC-hHHHHHHHHH-cCCCceEEEEeccCcHHHH
Q 005313 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF-EPQIRKIVKE-VPARRQTLMYTATWPREVR 366 (703)
Q Consensus 291 ~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf-~~~i~~il~~-l~~~~q~L~lSAT~p~~v~ 366 (703)
+.. +.+. .+.++++|||||++......+ ...+..|+.. +.....+|+.|.--..++.
T Consensus 153 ------------~~~---~~l~----~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~ 211 (248)
T PRK12377 153 ------------SGE---KFLQ----ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMS 211 (248)
T ss_pred ------------hHH---HHHH----HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHH
Confidence 001 1111 245788999999964432222 2233444433 3445667887776544443
No 264
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.66 E-value=0.096 Score=56.53 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=29.9
Q ss_pred ccCcccEEEecccccccCCC-hHHHHHHHHHc-CCCceEEEEeccCcHHHHH
Q 005313 318 LNQVSYLVLDEADRMLDMGF-EPQIRKIVKEV-PARRQTLMYTATWPREVRK 367 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf-~~~i~~il~~l-~~~~q~L~lSAT~p~~v~~ 367 (703)
+.++++||||+++......| ...+..|+... .....+|+.|...+.++..
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~ 295 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLK 295 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 44678999999986543322 23444555443 3345677777766655543
No 265
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=95.66 E-value=0.011 Score=74.02 Aligned_cols=93 Identities=27% Similarity=0.390 Sum_probs=73.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhcCC--ceeEecCCCC-----------HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 005313 421 KIIVFCSTKKMCDQLARNLTRQF--GAAAIHGDKS-----------QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 487 (703)
Q Consensus 421 kvLVF~~s~~~a~~la~~L~~~~--~~~~lhg~~~-----------~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v 487 (703)
-.|+||+....+..+.+.+.+.+ .+..+.|.+. +..+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 45889998888888887776421 2222333221 1236688999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHHhccCCCC
Q 005313 488 RVVVNYDFPTGVEDYVHRIGRTGRAG 513 (703)
Q Consensus 488 ~~VI~~d~P~s~~~yiQriGRagR~G 513 (703)
+.|+.++.|.....|+|..||+-+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997653
No 266
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.64 E-value=0.058 Score=61.46 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 199 PIQAQSWPIALQ-----S----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 199 piQ~~ai~~il~-----g----rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
|||+.++-.++. + +.+++.-+=+-|||......++..+.. ....+..+++++++++-+..+.+.++++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~---~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL---DGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc---CCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 688888877772 2 356777899999997544333333322 1233568999999999999999988887
Q ss_pred cCC
Q 005313 270 GKS 272 (703)
Q Consensus 270 ~~~ 272 (703)
...
T Consensus 78 i~~ 80 (477)
T PF03354_consen 78 IEA 80 (477)
T ss_pred HHh
Confidence 654
No 267
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.62 E-value=0.047 Score=63.22 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=28.2
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
...++++||||+|+|....+ ..+.++++.-+.+..+|+.|.-
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCC
Confidence 34688999999998754433 3455566666667766666644
No 268
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.3 Score=55.53 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=61.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc-C-cHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS-P-TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP 288 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~-P-treLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~ 288 (703)
++.++++++||+|||..+...+....... .+.++.++. . .+.-+. +.++.+....++.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~-----~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~---------- 411 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQH-----APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVH---------- 411 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEecccccccHH---HHHHHhhcccCceeE----------
Confidence 45677889999999976543332222210 012444443 2 232222 223333333333221
Q ss_pred hhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC-ChHHHHHHHHHcCCCceEEEEeccCc-HHHH
Q 005313 289 QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPARRQTLMYTATWP-REVR 366 (703)
Q Consensus 289 ~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g-f~~~i~~il~~l~~~~q~L~lSAT~p-~~v~ 366 (703)
.+.+...|...+.. +.++++||||.+=++.... ....+..+... .....+|+++++.. .++.
T Consensus 412 -----------~a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 412 -----------EADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred -----------ecCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHH
Confidence 11233445554442 3468999999997642111 11223333222 23345778888864 3444
Q ss_pred HHHHHh
Q 005313 367 KIAADL 372 (703)
Q Consensus 367 ~l~~~~ 372 (703)
+++..|
T Consensus 476 eii~~f 481 (559)
T PRK12727 476 EVVRRF 481 (559)
T ss_pred HHHHHH
Confidence 444433
No 269
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.062 Score=60.86 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=25.9
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
..+++++||||+|.|.... ...+.+.++..++...+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3578899999999775432 334555566656666555544
No 270
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.53 E-value=0.072 Score=53.92 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=15.6
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
...+++.+++|+|||..+.
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4678999999999996543
No 271
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.52 E-value=0.047 Score=57.03 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=31.7
Q ss_pred cccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccC
Q 005313 317 SLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 361 (703)
Q Consensus 317 ~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~ 361 (703)
....+++|||||||.|-.. ....+.+.++..+....+++.+.-+
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 3456799999999988544 3456777777777777777776654
No 272
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.44 E-value=0.027 Score=65.18 Aligned_cols=125 Identities=19% Similarity=0.174 Sum_probs=73.0
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHH-HHHHHhcCC
Q 005313 196 SPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQ-DEAVKFGKS 272 (703)
Q Consensus 196 ~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~-~~~~k~~~~ 272 (703)
..+|||.+.++.+... +.|+++.++-+|||.+.+..+...+.. . ...+|++.||.++++++. +.+......
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~---~---P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ---D---PGPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe---C---CCCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 6689999999988776 578888999999998544433222222 2 237999999999999976 445544433
Q ss_pred CCceEEEeeC----CCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccc
Q 005313 273 SRISCTCLYG----GAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 273 ~~i~v~~~~g----g~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml 333 (703)
+..-...+.. ........+.+. +..|.++....- ..+.-..+.+|++||+|.+.
T Consensus 90 sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 90 SPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred CHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 3211111111 011111112222 334444432211 12233457899999999884
No 273
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.41 E-value=0.052 Score=56.70 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=23.2
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHH
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE 257 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Ptre 257 (703)
.+|-+|||+||+- | +..+..+..-....-+|+||+|++-
T Consensus 90 ~~VYGPTG~GKSq--L---lRNLis~~lI~P~PETVfFItP~~~ 128 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ--L---LRNLISCQLIQPPPETVFFITPQKD 128 (369)
T ss_pred EEEECCCCCCHHH--H---HHHhhhcCcccCCCCceEEECCCCC
Confidence 3566999999994 2 2222222222122348999999863
No 274
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.039 Score=63.14 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=27.5
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
.+++++||||+|+|.... ...+.++++..++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 467899999999775433 345556777777777666655
No 275
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.36 E-value=0.038 Score=53.36 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=30.4
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccC
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 361 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~ 361 (703)
..++++||||||.|... ....+.++++..+.+..+|++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 46889999999987543 4566777788878787777776554
No 276
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.36 E-value=0.43 Score=55.51 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=47.4
Q ss_pred CcHHHHHHHHHHH---cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 197 PTPIQAQSWPIAL---QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 197 p~piQ~~ai~~il---~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
|.|.-.+=|+.++ +.+-.++.+|=|-|||.+..+.+...+.. .+.+++|.+|...-++++.+.+.++..
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3444444444444 45677888999999998765544444332 145899999999888888888777665
No 277
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.04 Score=63.93 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=26.2
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
..++++||||+|+|... ....+.++++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 46789999999976543 3345666677666666555544
No 278
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.35 E-value=0.17 Score=60.28 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=17.7
Q ss_pred CCccccccCCccceEeecCCCC
Q 005313 25 KPWKGLVDGRTGYLYFWNPETN 46 (703)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~ 46 (703)
.-|..||=|++-+.||+.-+.+
T Consensus 614 ~hw~~lv~gss~~~~~~~~~~~ 635 (1164)
T PTZ00112 614 EHWDNLVLGSSDLYYSFSNEKK 635 (1164)
T ss_pred hhhhhhhccccceeeeeccccc
Confidence 4699999999998888865543
No 279
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.31 E-value=0.051 Score=63.52 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=26.6
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
+.++++|||||+|.|... ....+.++++..+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe
Confidence 346789999999976432 2344566666666667666655
No 280
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.22 E-value=0.069 Score=59.26 Aligned_cols=135 Identities=13% Similarity=0.191 Sum_probs=75.5
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHH-HHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE-LATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Ptre-La~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 291 (703)
-.++.+..|||||.+..+-++..+.... .+.++|++-++.. |...+..++.......++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i- 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK----KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI- 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC----CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-
Confidence 3577899999999887776666655531 1357899988876 55556666665544444321111111110 11
Q ss_pred hhcC-CCcEEEECH-HHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcC--CCceEEEEeccCcH
Q 005313 292 DIDR-GVDIVVATP-GRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP--ARRQTLMYTATWPR 363 (703)
Q Consensus 292 ~l~~-g~dIlV~Tp-~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~--~~~q~L~lSAT~p~ 363 (703)
.+.. +..|++..- +...++ .....+.+++||||..+. ...+..++..+. .....+++|.+|+.
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~----~~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLT----FEDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred EecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcC----HHHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 1122 445666554 222111 123346899999999873 235555555553 22224778888754
No 281
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.21 E-value=0.099 Score=59.62 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.8
Q ss_pred CEEEEecCCChHHHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYLLP 231 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp 231 (703)
.+|+++|.|+|||.++.+.
T Consensus 45 a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARII 63 (507)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6889999999999876543
No 282
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.14 E-value=0.15 Score=57.51 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=29.4
Q ss_pred CcccEEEecccccccCC-ChHHHHHHHHHc-CCCceEEEEeccCcHHHHHHH
Q 005313 320 QVSYLVLDEADRMLDMG-FEPQIRKIVKEV-PARRQTLMYTATWPREVRKIA 369 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~g-f~~~i~~il~~l-~~~~q~L~lSAT~p~~v~~l~ 369 (703)
.+++|||||+|.+.+.. ....+..++..+ ....++|+.|...|..+..+.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHH
Confidence 46789999999876542 223344444443 234566666656666555443
No 283
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.13 E-value=0.14 Score=54.94 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=27.5
Q ss_pred CcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEec
Q 005313 320 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSA 359 (703)
..++|||||+|.+........+..+++..+...++|+.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4678999999987333344566667777777776666553
No 284
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.12 E-value=0.13 Score=67.65 Aligned_cols=62 Identities=23% Similarity=0.207 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHH---HHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH
Q 005313 195 SSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYL---LPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 262 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~l---lp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~ 262 (703)
..+++.|++|+..++.. +-++|.+..|+|||.+.. -++...+.. .+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh------cCCeEEEEeChHHHHHHH
Confidence 46899999999999876 445677999999996531 122222221 245899999997666554
No 285
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.051 Score=56.50 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=34.0
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k 268 (703)
+++++++.+++|+|||..+...+...+ + .+.+ ++++++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~------~g~s-v~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K------AGIS-VLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H------cCCe-EEEEEHHHHHHHHHHHHhc
Confidence 678999999999999975443333333 2 1334 4456667888887766543
No 286
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.10 E-value=0.12 Score=60.56 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=26.3
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
..++++||||+|+|.... ...+.++++.-+....+|+.|
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~T 156 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEec
Confidence 467899999999875433 445555666666666555553
No 287
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.10 E-value=0.058 Score=68.31 Aligned_cols=123 Identities=16% Similarity=0.081 Sum_probs=77.1
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCce
Q 005313 197 PTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276 (703)
Q Consensus 197 p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~ 276 (703)
+|+-|.++|.. .+++++|.|..|||||.+.+--++..+... .. -.++|+|+=|+..+.++.+.+++.....- .
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~---~~~il~~tFt~~aa~e~~~ri~~~l~~~~-~ 74 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-VD---IDRLLVVTFTNAAAREMKERIEEALQKAL-Q 74 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CC---HhhEEEEeccHHHHHHHHHHHHHHHHHHH-h
Confidence 58889999973 678999999999999988665555555432 11 13699999999999988887766432110 0
Q ss_pred EEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcccccc--CcccEEEecccc
Q 005313 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLN--QVSYLVLDEADR 331 (703)
Q Consensus 277 v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~--~~~~IViDEaH~ 331 (703)
.........+.+..-...-|+|.+.|...+.+.....- +..+=|+||...
T Consensus 75 -----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 -----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00011111122222246789999999765543322221 224567888874
No 288
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.09 E-value=0.11 Score=60.41 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=27.6
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
....++|||||+|.|... ....+.+.++..++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 456789999999987543 2345556666667777666655
No 289
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.06 E-value=0.28 Score=55.52 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=26.8
Q ss_pred CcccEEEecccccccCC-ChHHHHHHHHHc-CCCceEEEEeccCcHHHH
Q 005313 320 QVSYLVLDEADRMLDMG-FEPQIRKIVKEV-PARRQTLMYTATWPREVR 366 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~g-f~~~i~~il~~l-~~~~q~L~lSAT~p~~v~ 366 (703)
.+++|||||+|.+.... ....+..++..+ ....++|+.|...|..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 57789999999875432 122344444433 334566665555555544
No 290
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.04 E-value=0.17 Score=56.40 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=26.3
Q ss_pred CcccEEEecccccccCC-ChHHHHHHHHHc-CCCceEEEEeccCcHHHH
Q 005313 320 QVSYLVLDEADRMLDMG-FEPQIRKIVKEV-PARRQTLMYTATWPREVR 366 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~g-f~~~i~~il~~l-~~~~q~L~lSAT~p~~v~ 366 (703)
.+++|||||+|.+.... ....+..++..+ ....++|+.|...|..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 46789999999875432 122334444433 334566665555555443
No 291
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.038 Score=62.10 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=14.5
Q ss_pred EEEEecCCChHHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 214 vlv~ApTGsGKTla~ll 230 (703)
+|+++|.|+|||.++.+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987654
No 292
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.91 E-value=0.15 Score=55.32 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHHHcC-----CCEEEEecCCChHHHHHHH
Q 005313 197 PTPIQAQSWPIALQS-----RDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 197 p~piQ~~ai~~il~g-----rdvlv~ApTGsGKTla~ll 230 (703)
+||||...|..+..- +-+|+.+|.|.||+..+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~ 40 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH 40 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH
Confidence 479999999887753 2568899999999976654
No 293
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.91 E-value=0.44 Score=54.79 Aligned_cols=126 Identities=21% Similarity=0.335 Sum_probs=80.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhcC--------CceeEecCCCCHHHHHHHHHHHh----cCCCcEEEEc--ccccccCCCC
Q 005313 420 SKIIVFCSTKKMCDQLARNLTRQ--------FGAAAIHGDKSQSERDYVLNQFR----AGRSPVLVAT--DVAARGLDIK 485 (703)
Q Consensus 420 ~kvLVF~~s~~~a~~la~~L~~~--------~~~~~lhg~~~~~eR~~vl~~F~----~G~~~ILVaT--dv~~~GIDIp 485 (703)
+-+++|+++.+....+.+.+++. .+.+.+-...+ -+.+++.|. .|.-.||+|. .-+++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 57899999999988888877631 11112211111 344555553 4554566665 6889999998
Q ss_pred C--ccEEEEecCCCC----HH----------------------------HHHHHHhccCCCCCccEEEEEEecCChHHHH
Q 005313 486 D--IRVVVNYDFPTG----VE----------------------------DYVHRIGRTGRAGATGVAYTFFGDQDSRYAS 531 (703)
Q Consensus 486 ~--v~~VI~~d~P~s----~~----------------------------~yiQriGRagR~G~~g~~i~~~~~~d~~~~~ 531 (703)
+ ++.||.+++|.. ++ ..-|-||||-|--++-.++.+++.. +.+
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R---Y~~ 783 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR---YAR 783 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh---hcC
Confidence 6 678888887742 11 2349999999998888888888543 222
Q ss_pred HHHHHHHhccCcccHHHHHHHHcCCCC
Q 005313 532 DLIKLLEGAKQQVPRELRDMASRGGGM 558 (703)
Q Consensus 532 ~l~~~l~~~~~~v~~~L~~la~r~~g~ 558 (703)
...+ .++.|+.+.....-|+
T Consensus 784 p~~R-------KLp~WI~~~v~s~~~~ 803 (821)
T KOG1133|consen 784 PLSR-------KLPKWIRKRVHSKAGF 803 (821)
T ss_pred chhh-------hccHHHHhHhccccCc
Confidence 2222 5677886666544443
No 294
>PLN03025 replication factor C subunit; Provisional
Probab=94.87 E-value=0.2 Score=53.84 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=25.2
Q ss_pred CcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEec
Q 005313 320 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSA 359 (703)
..++|||||+|.|... ....+.++++..+....+++.+.
T Consensus 99 ~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFALACN 137 (319)
T ss_pred CeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEEEeC
Confidence 5789999999987543 24455666666555555555443
No 295
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.86 E-value=0.051 Score=56.83 Aligned_cols=52 Identities=21% Similarity=0.110 Sum_probs=29.4
Q ss_pred HcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005313 209 LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAV 267 (703)
Q Consensus 209 l~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~ 267 (703)
..+.-+++.+++|+|||...+..+...+.. .+.++++++-- +-..++...+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~------~g~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ------HGVRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh------cCceEEEEEcc-cCHHHHHHHHH
Confidence 345677888999999996544333333221 13477887642 23344444443
No 296
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.80 E-value=0.14 Score=50.60 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=78.5
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCch
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 289 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~ 289 (703)
....+++..++|.|||.+++--++..+.. +.+|+|+-=.+--.. ..+...+....++.....-.+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-------G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~g~~~~~~~- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH-------GKKVGVVQFIKGAWS--TGERNLLEFGGGVEFHVMGTGFTWET- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC-------CCeEEEEEEecCCCc--cCHHHHHhcCCCcEEEECCCCCcccC-
Confidence 45678888999999999887766666655 457777643221100 11222221111233222111100000
Q ss_pred hhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCC--hHHHHHHHHHcCCCceEEEEeccCcHHHHH
Q 005313 290 LKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPARRQTLMYTATWPREVRK 367 (703)
Q Consensus 290 ~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf--~~~i~~il~~l~~~~q~L~lSAT~p~~v~~ 367 (703)
...+.-+......++.. ...+.-..+++|||||+-..++.++ ...+..+++..|+..-+|++--.+|+++.+
T Consensus 91 -----~~~~e~~~~~~~~~~~a-~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 91 -----QDRERDIAAAREGWEEA-KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred -----CCcHHHHHHHHHHHHHH-HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 00000000011111111 1223346789999999998888775 456777788877777777777778888776
Q ss_pred HHH
Q 005313 368 IAA 370 (703)
Q Consensus 368 l~~ 370 (703)
++.
T Consensus 165 ~AD 167 (191)
T PRK05986 165 AAD 167 (191)
T ss_pred hCc
Confidence 653
No 297
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.77 E-value=0.15 Score=57.53 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 291 (703)
+.+++.+++|+|||... .++...+.... .+.+++++.. .++..++...+..-.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~----~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF----SDLKVSYMSG-DEFARKAVDILQKTH--------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC----CCCeEEEEEH-HHHHHHHHHHHHHhh---------------------
Confidence 45889999999999532 22333333211 1336666555 567666655543210
Q ss_pred hhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC-ChHHHHHHHHHc-CCCceEEEEeccCcHHH
Q 005313 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEV-PARRQTLMYTATWPREV 365 (703)
Q Consensus 292 ~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g-f~~~i~~il~~l-~~~~q~L~lSAT~p~~v 365 (703)
+.+..+.. .+.++++|||||+|.+.... ....+..++..+ ....|+|+.|-..|...
T Consensus 195 -------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 11111111 13467899999999764321 234455555544 33446666666666544
No 298
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.74 E-value=0.39 Score=50.15 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCCEEEEecCCChHHHHHH
Q 005313 202 AQSWPIALQSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 202 ~~ai~~il~grdvlv~ApTGsGKTla~l 229 (703)
++++..+..++.+++.+++|+|||..+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 4455667778999999999999997654
No 299
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.097 Score=60.76 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=16.0
Q ss_pred CEEEEecCCChHHHHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYLLPG 232 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~ 232 (703)
.+|+.+|.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47789999999998776433
No 300
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.73 E-value=0.05 Score=65.00 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=25.6
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEE
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 357 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~l 357 (703)
..++++||||||+|... ....+.++++..+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 46789999999987432 334555666666666656665
No 301
>PTZ00293 thymidine kinase; Provisional
Probab=94.73 E-value=0.21 Score=50.25 Aligned_cols=37 Identities=19% Similarity=-0.015 Sum_probs=23.7
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
+=.++.+|+++|||.-.+-.+..+... +.+++++-|.
T Consensus 5 ~i~vi~GpMfSGKTteLLr~i~~y~~a-------g~kv~~~kp~ 41 (211)
T PTZ00293 5 TISVIIGPMFSGKTTELMRLVKRFTYS-------EKKCVVIKYS 41 (211)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHHc-------CCceEEEEec
Confidence 335778999999996544333333222 3478888885
No 302
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.71 E-value=0.14 Score=60.97 Aligned_cols=84 Identities=18% Similarity=0.336 Sum_probs=68.8
Q ss_pred HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccC
Q 005313 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAARGL 482 (703)
Q Consensus 409 L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-v~~~GI 482 (703)
+..++.....+.+++|.++|+..|.+.++.|++ .+.+..+||+++..+|..+++.+.+|+..|||+|. .+...+
T Consensus 300 ~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v 379 (681)
T PRK10917 300 ALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV 379 (681)
T ss_pred HHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc
Confidence 334444445677999999999999988888764 36789999999999999999999999999999996 445567
Q ss_pred CCCCccEEEE
Q 005313 483 DIKDIRVVVN 492 (703)
Q Consensus 483 DIp~v~~VI~ 492 (703)
.+.++.+||.
T Consensus 380 ~~~~l~lvVI 389 (681)
T PRK10917 380 EFHNLGLVII 389 (681)
T ss_pred hhcccceEEE
Confidence 7888888774
No 303
>PHA00729 NTP-binding motif containing protein
Probab=94.66 E-value=0.4 Score=48.72 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=40.1
Q ss_pred cEEEECHHHHHHHHHhccccccCcccEEEecc--cccccCCCh----HHHHHHHHHcCCCceEEEEeccCcHHHHHHHHH
Q 005313 298 DIVVATPGRLNDILEMRRISLNQVSYLVLDEA--DRMLDMGFE----PQIRKIVKEVPARRQTLMYTATWPREVRKIAAD 371 (703)
Q Consensus 298 dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEa--H~ml~~gf~----~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~ 371 (703)
..++.+.+.|.+.+....-....+++|||||+ |.+. ..|. ..+..+...+....+++.+...-+.++.+.++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~-~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSK-YVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcc-cchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 46666667676666532222334678999993 2221 1011 223334444555566777777766666665554
No 304
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.64 E-value=0.26 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=17.2
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHL 236 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l 236 (703)
.++++.+|+|+|||.+.- .++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHH
Confidence 578999999999996543 334444
No 305
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.63 E-value=0.21 Score=52.08 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.5
Q ss_pred CCEEEEecCCChHHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ll 230 (703)
.++++.+|+|+|||..+-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999976543
No 306
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.62 E-value=0.51 Score=51.60 Aligned_cols=126 Identities=23% Similarity=0.300 Sum_probs=64.2
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc-Cc-HH-HHHHHHHHHHHhcCCCCceEEEeeCCCCCCc
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS-PT-RE-LATQIQDEAVKFGKSSRISCTCLYGGAPKGP 288 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~-Pt-re-La~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~ 288 (703)
+.+++++|+|+|||....-.+...... +.++.+|+ .+ |. -+.||.. +....++.+
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~-------g~~V~lItaDtyR~gAveQLk~----yae~lgvpv----------- 264 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQ-------NRTVGFITTDTFRSGAVEQFQG----YADKLDVEL----------- 264 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCCccCccHHHHHHH----HhhcCCCCE-----------
Confidence 456788999999997655433332222 23454444 33 21 2344433 333333221
Q ss_pred hhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccC-CChHHHHHHHHHcCCCceEEEEeccCcH-HHH
Q 005313 289 QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPR-EVR 366 (703)
Q Consensus 289 ~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~-gf~~~i~~il~~l~~~~q~L~lSAT~p~-~v~ 366 (703)
.++.+|..|.+.+.... ....+++||||=+=+.... .....+..+...+.+..-++.+||+... ++.
T Consensus 265 ----------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~ 333 (407)
T PRK12726 265 ----------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVM 333 (407)
T ss_pred ----------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHH
Confidence 12345666655554221 1246799999988664321 1223344444445555446777876543 333
Q ss_pred HHHH
Q 005313 367 KIAA 370 (703)
Q Consensus 367 ~l~~ 370 (703)
+++.
T Consensus 334 ~i~~ 337 (407)
T PRK12726 334 TILP 337 (407)
T ss_pred HHHH
Confidence 4333
No 307
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.61 E-value=0.11 Score=54.65 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccC--CCCCCCEEEEEcCcHHHHHHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRN--DPRLGPTVLVLSPTRELATQIQDEA 266 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~--~~~~g~~vLIl~PtreLa~Q~~~~~ 266 (703)
.+++++++|+-|||.+.- -+....-... ....-|.++|-+|...-....+..+
T Consensus 62 p~lLivG~snnGKT~Ii~--rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE--RFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred CceEEecCCCCcHHHHHH--HHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 489999999999997421 1111111111 1111256667777655444444443
No 308
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.61 E-value=0.17 Score=58.72 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=26.8
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
..++++||||+|+|... -...+.+.++..+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 56889999999987543 3345566666666666666655
No 309
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.60 E-value=0.23 Score=47.77 Aligned_cols=53 Identities=19% Similarity=0.351 Sum_probs=42.0
Q ss_pred cccCcccEEEecccccccCCC--hHHHHHHHHHcCCCceEEEEeccCcHHHHHHH
Q 005313 317 SLNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPARRQTLMYTATWPREVRKIA 369 (703)
Q Consensus 317 ~l~~~~~IViDEaH~ml~~gf--~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~ 369 (703)
....+++|||||+=..++.++ ...+..+++..+...-+|+.+-.+|+++.+++
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 356789999999998777664 45677788888888888888888888877655
No 310
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.59 E-value=0.17 Score=51.98 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=35.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
+..++|.+++|+|||+.++-.+...+.. +.++|+++- .+-..|+.+.+..+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~-------ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-------GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 4567888999999997655444444432 447888874 566677777776654
No 311
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.55 E-value=0.19 Score=59.18 Aligned_cols=90 Identities=21% Similarity=0.281 Sum_probs=72.6
Q ss_pred chhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHhcCCc---eeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 005313 403 MDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQFG---AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVA 478 (703)
Q Consensus 403 ~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~~~~~---~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~ 478 (703)
..|.+.+..+++.. ..++.+||.++.+..+.++.+.|++.|+ ++.+|++++..+|.+.+....+|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 45667766666544 5577899999999999999999987664 8899999999999999999999999999999654
Q ss_pred cccCCCCCccEEEEe
Q 005313 479 ARGLDIKDIRVVVNY 493 (703)
Q Consensus 479 ~~GIDIp~v~~VI~~ 493 (703)
.- +-++++.+||..
T Consensus 251 vF-aP~~~LgLIIvd 264 (665)
T PRK14873 251 VF-APVEDLGLVAIW 264 (665)
T ss_pred EE-eccCCCCEEEEE
Confidence 32 345566666654
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.46 E-value=0.63 Score=48.90 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=35.8
Q ss_pred ccCcccEEEeccccccc-CCChHHHHHHHHHcC------CCceEEEEeccCcHHHHHHHHHhh
Q 005313 318 LNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVP------ARRQTLMYTATWPREVRKIAADLL 373 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~-~gf~~~i~~il~~l~------~~~q~L~lSAT~p~~v~~l~~~~l 373 (703)
...+++||||=+-++.. ......+.++....+ +...+|.++||...+....+..+.
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 35688999999877542 122344555555544 566689999997766555555544
No 313
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.43 E-value=0.15 Score=57.41 Aligned_cols=52 Identities=27% Similarity=0.237 Sum_probs=33.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
+.-+++.+++|+|||...+..+...... +.++|++.- .+-..|+...++++.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-------g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA-------GGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEc-cccHHHHHHHHHHcC
Confidence 3456788999999997544333332211 347888875 456677776666654
No 314
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.43 E-value=0.23 Score=53.62 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=69.4
Q ss_pred CcHHHHHHHHHHHcC--C---CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 197 PTPIQAQSWPIALQS--R---DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 197 p~piQ~~ai~~il~g--r---dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
+||||+..|..+... + .+|+.+|.|.|||..+...+ ....|....... .. | .....|+.+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a--~~llC~~~~~~~-~~---C-------g~C~~C~~~~~ 68 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA--QALLCETPAPGH-KP---C-------GECMSCHLFGQ 68 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH--HHHcCCCCCCCC-CC---C-------CcCHHHHHHhc
Confidence 479999999888743 2 47889999999997655432 222222110000 00 1 11223333333
Q ss_pred CCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCC
Q 005313 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 351 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~ 351 (703)
...-.+..+.......+. . .....|-|-..-.+.+.+.... .....+++|+|++|.|- ......+.++++..+..
T Consensus 69 ~~HpD~~~~~p~~~~~~~-g--~~~~~I~id~iR~l~~~~~~~p-~~~~~kV~iiEp~~~Ld-~~a~naLLk~LEep~~~ 143 (325)
T PRK08699 69 GSHPDFYEITPLSDEPEN-G--RKLLQIKIDAVREIIDNVYLTS-VRGGLRVILIHPAESMN-LQAANSLLKVLEEPPPQ 143 (325)
T ss_pred CCCCCEEEEecccccccc-c--ccCCCcCHHHHHHHHHHHhhCc-ccCCceEEEEechhhCC-HHHHHHHHHHHHhCcCC
Confidence 332222222211100000 0 0000122222222223222211 13567889999999763 34566677778777665
Q ss_pred ceEEEEec
Q 005313 352 RQTLMYTA 359 (703)
Q Consensus 352 ~q~L~lSA 359 (703)
..+|++|-
T Consensus 144 ~~~Ilvth 151 (325)
T PRK08699 144 VVFLLVSH 151 (325)
T ss_pred CEEEEEeC
Confidence 55555443
No 315
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.43 E-value=0.27 Score=57.24 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=27.3
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
..+++++||||+|+|... ....+.++++..++...+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 356889999999976533 3455666677766666566555
No 316
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.42 E-value=0.19 Score=53.69 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=27.1
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEec
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSA 359 (703)
..+++|||||||.|.. .....+.+.++..+.+..+|+.+.
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEcC
Confidence 5789999999998754 234556666666666665565554
No 317
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.41 E-value=0.3 Score=50.02 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=32.0
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
.+.-+++.+++|+|||..++-.+...+.. +.++++++. .+-..+..+.+..+.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-------g~~~~yi~~-e~~~~~~~~~~~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN-------GYSVSYVST-QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEeC-CCCHHHHHHHHHHhC
Confidence 35677888999999997644333333222 347788874 334455555555543
No 318
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.38 E-value=0.31 Score=44.25 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.1
Q ss_pred cccEEEecccccccCC
Q 005313 321 VSYLVLDEADRMLDMG 336 (703)
Q Consensus 321 ~~~IViDEaH~ml~~g 336 (703)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5789999999887654
No 319
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.38 E-value=0.19 Score=55.65 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.6
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
.++++.+++|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57899999999999753
No 320
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.38 E-value=0.19 Score=54.12 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=25.8
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEec
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSA 359 (703)
...++|||||+|.+... ....+..+++..+....+|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45678999999977432 34456666666666665555443
No 321
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.38 E-value=0.29 Score=51.76 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=14.3
Q ss_pred CEEEEecCCChHHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ll 230 (703)
.+++++|||+|||.+...
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567889999999976543
No 322
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.17 Score=58.93 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=24.7
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
..++++||||+|+|.... ...+.+.++..+....+|+.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a-~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA-FNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHhcccCCCCeEEEEEE
Confidence 468899999999875433 233445555555555555544
No 323
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.32 E-value=0.22 Score=54.09 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.2
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
.++|+.+|+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 378999999999997654
No 324
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.29 E-value=0.081 Score=56.91 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=68.6
Q ss_pred CcHHHHHHHHHHHc----CC---CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 197 PTPIQAQSWPIALQ----SR---DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 197 p~piQ~~ai~~il~----gr---dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
++|||+..|..+.+ ++ -.|+.+|.|.||+..+..-+ ....|....... -|- ....|+.+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A--~~llC~~~~~~~-----~Cg-------~C~sC~~~ 68 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA--QWLMCQTPQGDQ-----PCG-------QCHSCHLF 68 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH--HHHcCCCCCCCC-----CCC-------CCHHHHHH
Confidence 47888888877663 33 56788999999997655333 222232211100 011 12334444
Q ss_pred cCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcC
Q 005313 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 349 (703)
Q Consensus 270 ~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~ 349 (703)
.....-.+..+..... ..|-|-..-.+.+.+... -.....+++||||||.|-.. ....+.++++.-|
T Consensus 69 ~~g~HPD~~~i~p~~~-----------~~I~id~iR~l~~~~~~~-~~~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp 135 (325)
T PRK06871 69 QAGNHPDFHILEPIDN-----------KDIGVDQVREINEKVSQH-AQQGGNKVVYIQGAERLTEA-AANALLKTLEEPR 135 (325)
T ss_pred hcCCCCCEEEEccccC-----------CCCCHHHHHHHHHHHhhc-cccCCceEEEEechhhhCHH-HHHHHHHHhcCCC
Confidence 3333322322221100 011111111122222211 12346789999999998543 3456667777766
Q ss_pred CCceEEEEecc
Q 005313 350 ARRQTLMYTAT 360 (703)
Q Consensus 350 ~~~q~L~lSAT 360 (703)
++..+|++|..
T Consensus 136 ~~~~fiL~t~~ 146 (325)
T PRK06871 136 PNTYFLLQADL 146 (325)
T ss_pred CCeEEEEEECC
Confidence 66656665544
No 325
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.26 E-value=0.21 Score=50.77 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=25.1
Q ss_pred CcccEEEecccccccCCChHHHHHHHHHcCCCce-EEEEeccCc
Q 005313 320 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ-TLMYTATWP 362 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q-~L~lSAT~p 362 (703)
..++|||||+|.+-.. -...+..++..+..... +++++++.+
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4568999999986432 33445555555443333 466676654
No 326
>PF13173 AAA_14: AAA domain
Probab=94.23 E-value=0.19 Score=46.18 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=25.1
Q ss_pred CcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 320 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
.-.+|||||+|.+-+ +...++.+.... ++.++++++-.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999998853 566777777654 44555554433
No 327
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.23 E-value=0.43 Score=47.05 Aligned_cols=87 Identities=20% Similarity=0.128 Sum_probs=49.3
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhh
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l 293 (703)
.++.+|+.||||...|.-+..+.. .+.++++..|... .. .+...+.-.-|...
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~-------~g~~v~vfkp~iD----------~R---~~~~~V~Sr~G~~~------- 59 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE-------AGMKVLVFKPAID----------TR---YGVGKVSSRIGLSS------- 59 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH-------cCCeEEEEecccc----------cc---cccceeeeccCCcc-------
Confidence 477899999999754433322222 2458888888421 00 11111111122211
Q ss_pred cCCCcEEEECHHHHHHHHHhccccccCcccEEEecccc
Q 005313 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331 (703)
Q Consensus 294 ~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ 331 (703)
.-++|-....+.+.+....... .+++|+||||+-
T Consensus 60 ---~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF 93 (201)
T COG1435 60 ---EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQF 93 (201)
T ss_pred ---cceecCChHHHHHHHHhcccCC-CcCEEEEehhHh
Confidence 2466667777777776543322 278999999995
No 328
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=94.22 E-value=1.4 Score=50.00 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=23.7
Q ss_pred HHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcc
Q 005313 500 EDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQV 544 (703)
Q Consensus 500 ~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v 544 (703)
.....-+-|+||+|..|..=.-+.--.......+..+......++
T Consensus 324 ~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 324 NVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred CCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 345566677777777776555555555444333333333333343
No 329
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.19 E-value=0.36 Score=52.78 Aligned_cols=109 Identities=13% Similarity=0.161 Sum_probs=62.1
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 291 (703)
+.+.+.++.|.|||+. +-++....... .+.+ ++.-+...++...+.++.. ..
T Consensus 63 ~GlYl~G~vG~GKT~L--md~f~~~lp~~----~k~R----~HFh~Fm~~vh~~l~~~~~-----------~~------- 114 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTML--MDLFYDSLPIK----RKRR----VHFHEFMLDVHSRLHQLRG-----------QD------- 114 (362)
T ss_pred ceEEEECCCCCchhHH--HHHHHHhCCcc----cccc----ccccHHHHHHHHHHHHHhC-----------CC-------
Confidence 5688999999999963 22222211111 1112 3445777777777777641 00
Q ss_pred hhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHc-CCCceEEEEeccCcHHH
Q 005313 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARRQTLMYTATWPREV 365 (703)
Q Consensus 292 ~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l-~~~~q~L~lSAT~p~~v 365 (703)
+- ...+.+.+ .+...+|+|||+| +-|.+-...+..+++.+ ....-+|.+|.+.|.++
T Consensus 115 ------~~----l~~va~~l------~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 115 ------DP----LPQVADEL------AKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ------cc----HHHHHHHH------HhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 00 00111111 3355689999999 45554444555566554 45667888899988654
No 330
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.18 E-value=0.21 Score=54.89 Aligned_cols=52 Identities=31% Similarity=0.266 Sum_probs=31.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
+.-+++.+++|+|||...+..+...... +.++|++.-. +-..|+...+.++.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~-------g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR-------GGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc-------CCeEEEEECC-cCHHHHHHHHHHcC
Confidence 3556778999999997544333222221 3478888753 44567666666553
No 331
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.17 E-value=0.12 Score=52.20 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=14.3
Q ss_pred CEEEEecCCChHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 213 dvlv~ApTGsGKTla~l 229 (703)
++|+.+|+|+|||..+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 68999999999996443
No 332
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.11 E-value=0.39 Score=53.49 Aligned_cols=54 Identities=6% Similarity=0.170 Sum_probs=35.8
Q ss_pred cCcccEEEecccccccC-CChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHh
Q 005313 319 NQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 372 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~-gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~ 372 (703)
..+++||||=+-++-.. .....+.++.....+..-+|.++||...+....+..|
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 45788999998765321 1334555555566667778899999876666666555
No 333
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.11 E-value=0.46 Score=54.00 Aligned_cols=92 Identities=26% Similarity=0.208 Sum_probs=57.0
Q ss_pred CCCCHHH-HHHHHHCCCCCCc----HHHHHHHHHHHcCC--CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 005313 179 TGFPPEL-LREVHNAGFSSPT----PIQAQSWPIALQSR--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 251 (703)
Q Consensus 179 ~~l~~~l-~~~l~~~g~~~p~----piQ~~ai~~il~gr--dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLI 251 (703)
.++.+++ +..|.+.--..++ -+|.+==+.+...+ -+||++..|||||.++|--+..++...+.. -.+..|||
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~-l~~k~vlv 265 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP-LQAKPVLV 265 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc-cccCceEE
Confidence 3444444 4455554433333 24555555555554 467779999999988775444444433322 22335999
Q ss_pred EcCcHHHHHHHHHHHHHhcC
Q 005313 252 LSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~ 271 (703)
|.|.+.++.-+...+-.++.
T Consensus 266 l~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EcCcHHHHHHHHHhchhhcc
Confidence 99999999888877766654
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.07 E-value=0.81 Score=44.26 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=30.7
Q ss_pred cCcccEEEeccccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHh
Q 005313 319 NQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 372 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~ 372 (703)
...++||+|....+.. ......+..+.....+..-++.+.+.-..+..+.+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 4678899999886521 11223333333334455567777776555555555444
No 335
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.06 E-value=0.15 Score=55.16 Aligned_cols=139 Identities=12% Similarity=0.060 Sum_probs=70.0
Q ss_pred CCcHHHHHHHHHHHc----CC---CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005313 196 SPTPIQAQSWPIALQ----SR---DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268 (703)
Q Consensus 196 ~p~piQ~~ai~~il~----gr---dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k 268 (703)
.+||||...|..+.+ ++ -.|+.+|.|.||+..+..- .....|.......+ |- ....|+.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~--A~~LlC~~~~~~~~-----Cg-------~C~sC~~ 67 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL--SRWLMCQQPQGHKS-----CG-------HCRGCQL 67 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH--HHHHcCCCCCCCCC-----CC-------CCHHHHH
Confidence 468899999877763 33 5678899999999765532 33333322111100 11 1223444
Q ss_pred hcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHc
Q 005313 269 FGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV 348 (703)
Q Consensus 269 ~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l 348 (703)
+.....-.+..+...... ..|-|-..-.+.+.+.... .....+++|||+||.|-.. ....+.++++.-
T Consensus 68 ~~~g~HPD~~~i~p~~~~----------~~I~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEP 135 (334)
T PRK07993 68 MQAGTHPDYYTLTPEKGK----------SSLGVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTDA-AANALLKTLEEP 135 (334)
T ss_pred HHcCCCCCEEEEeccccc----------ccCCHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCHH-HHHHHHHHhcCC
Confidence 433333223333221100 0111111222222222211 2356889999999998543 345566666665
Q ss_pred CCCceEEEEecc
Q 005313 349 PARRQTLMYTAT 360 (703)
Q Consensus 349 ~~~~q~L~lSAT 360 (703)
+++.-+|++|.-
T Consensus 136 p~~t~fiL~t~~ 147 (334)
T PRK07993 136 PENTWFFLACRE 147 (334)
T ss_pred CCCeEEEEEECC
Confidence 666655555544
No 336
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.02 E-value=0.42 Score=46.57 Aligned_cols=53 Identities=17% Similarity=0.388 Sum_probs=41.6
Q ss_pred ccCcccEEEecccccccCCC--hHHHHHHHHHcCCCceEEEEeccCcHHHHHHHH
Q 005313 318 LNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPARRQTLMYTATWPREVRKIAA 370 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf--~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~ 370 (703)
-..+++|||||+-..++.++ ...+..+++..|+...+|++.-.+|+++.+++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 46789999999998887774 346777888888888888888888888776653
No 337
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.01 E-value=0.27 Score=58.45 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=63.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhcC--CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEec
Q 005313 417 EPGSKIIVFCSTKKMCDQLARNLTRQ--FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYD 494 (703)
Q Consensus 417 ~~~~kvLVF~~s~~~a~~la~~L~~~--~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d 494 (703)
..+.++||.+++++.+.++.+.|++. ..+..+|++++..+|.+.+..+.+|+.+|+|+|..+.. +.+.++.+||..+
T Consensus 188 ~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 188 AQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 34678999999999999999999864 45889999999999999999999999999999974332 5567788877544
No 338
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.63 Score=51.02 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=18.1
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhh
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKR 238 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~ 238 (703)
.++++.++||+|||.+.-. ++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 3789999999999976433 3444443
No 339
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.98 E-value=0.27 Score=54.50 Aligned_cols=133 Identities=14% Similarity=0.016 Sum_probs=72.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC--
Q 005313 194 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK-- 271 (703)
Q Consensus 194 ~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~-- 271 (703)
+..+-..|.++.-..-.|+. .+.+=.|||||.+.++-+ .++.. + .+..+++|.+=|+.|+.++.....+|+.
T Consensus 160 IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~--k--nPd~~I~~Tfftk~L~s~~r~lv~~F~f~~ 233 (660)
T COG3972 160 IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHS--K--NPDSRIAFTFFTKILASTMRTLVPEFFFMR 233 (660)
T ss_pred HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhc--C--CCCceEEEEeehHHHHHHHHHHHHHHHHHH
Confidence 33445556666544444544 556778999996432221 12221 1 2345899999999999998887777652
Q ss_pred ------CCCceEEEeeCCCCCCchhhhhcCCCc---EEEECH----HHHHHHHHhccccccCcccEEEeccccc
Q 005313 272 ------SSRISCTCLYGGAPKGPQLKDIDRGVD---IVVATP----GRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 272 ------~~~i~v~~~~gg~~~~~~~~~l~~g~d---IlV~Tp----~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
...+.++...||..+.........-|+ +-+.-. .-+..-+....-...-+++|.|||++-+
T Consensus 234 ~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDF 307 (660)
T COG3972 234 VEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDF 307 (660)
T ss_pred hhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccC
Confidence 123445555666655433322222122 222111 1111111122223567899999999974
No 340
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.98 E-value=0.068 Score=58.62 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=24.4
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
...+++||||+|.|....+ ..+.+.++..+....+|+.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4578999999998754322 23445555555566555544
No 341
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.96 E-value=0.31 Score=54.48 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.4
Q ss_pred CEEEEecCCChHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 213 dvlv~ApTGsGKTla~l 229 (703)
.+++.+|+|+|||..+.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997543
No 342
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.96 E-value=0.28 Score=56.19 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=63.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhcCC--ceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEec
Q 005313 417 EPGSKIIVFCSTKKMCDQLARNLTRQF--GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYD 494 (703)
Q Consensus 417 ~~~~kvLVF~~s~~~a~~la~~L~~~~--~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d 494 (703)
..+.++||.++++..+.++++.|++.+ .+..+|++++..+|.+++....+|+.+|+|+|..+.. +.+.++.+||..+
T Consensus 23 ~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 23 ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 456789999999999999999998644 5789999999999999999999999999999965432 4566777777543
No 343
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.53 Score=49.12 Aligned_cols=152 Identities=17% Similarity=0.239 Sum_probs=80.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCC-----CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCC
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSR-----DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLG 246 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~gr-----dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g 246 (703)
|-..|++.-=.+...++|+..=+. |+ -+|.+..++ -+|+.+|+|+||+. |.-++..-. +
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVIL---PI---KFPqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVATEA--------n 191 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVIL---PI---KFPQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVATEA--------N 191 (439)
T ss_pred CCCchhhhccchhHHHHHHhheee---cc---cchhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHHhhc--------C
Confidence 446676642223445555443111 11 135666664 48899999999994 322222211 1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEE
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVL 326 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IVi 326 (703)
...|-+.+..|+..|.-+-.++.+. |..+... ...++|+|
T Consensus 192 -STFFSvSSSDLvSKWmGESEkLVkn----------------------------------LFemARe-----~kPSIIFi 231 (439)
T KOG0739|consen 192 -STFFSVSSSDLVSKWMGESEKLVKN----------------------------------LFEMARE-----NKPSIIFI 231 (439)
T ss_pred -CceEEeehHHHHHHHhccHHHHHHH----------------------------------HHHHHHh-----cCCcEEEe
Confidence 4577777788988887766665221 2222222 23567999
Q ss_pred ecccccccCC---ChHHHHHH----HHHc----CCCceEEEEeccC-cHHHHHHHHHhhcCceec
Q 005313 327 DEADRMLDMG---FEPQIRKI----VKEV----PARRQTLMYTATW-PREVRKIAADLLVNPVQV 379 (703)
Q Consensus 327 DEaH~ml~~g---f~~~i~~i----l~~l----~~~~q~L~lSAT~-p~~v~~l~~~~l~~~~~i 379 (703)
||+|.+.... -....+.| +-++ ..+-.+|.+.||- |-.+...++.-+...+.+
T Consensus 232 DEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 232 DEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred ehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 9999664322 11222222 2222 2345688899994 434444445444444433
No 344
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.95 E-value=0.35 Score=55.99 Aligned_cols=132 Identities=16% Similarity=0.112 Sum_probs=77.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC--CceEEEeeCCCCCCc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS--RISCTCLYGGAPKGP 288 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~--~i~v~~~~gg~~~~~ 288 (703)
.+-.++..|==.|||.... +++..+.... .+.++++++|.+..++.+.+++..+.... .-.+..+.| . .
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~----~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e---~ 324 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATF----RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E---T 324 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhC----CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c---E
Confidence 3556778899999998655 4444333211 24589999999999999988887764432 111212222 1 1
Q ss_pred hhhhhcCC--CcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHc-CCCceEEEEeccC
Q 005313 289 QLKDIDRG--VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARRQTLMYTATW 361 (703)
Q Consensus 289 ~~~~l~~g--~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l-~~~~q~L~lSAT~ 361 (703)
..-.+..+ ..|.+++. -+.+.+.=..+++||||||+.+-+ ..+..++-.+ ..+.++|++|-|-
T Consensus 325 I~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 325 ISFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred EEEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCC
Confidence 11122223 24555531 112223345789999999997643 3444444332 3478889998874
No 345
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.93 E-value=0.43 Score=48.53 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=30.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
+..+++.+++|+|||..++..+...+.. +..+++++- .+...++.+.++.+.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~-------g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD-------GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc-------CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 4678888999999996544333333322 336777764 344455555555443
No 346
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.92 E-value=0.93 Score=44.12 Aligned_cols=138 Identities=19% Similarity=0.213 Sum_probs=65.5
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhh
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l 293 (703)
+.|.-..|-|||.+++=-++..+-. +.+|+|+-=.+- ....-+...+....++.+...--+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~-------G~rV~ivQFlKg--~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~- 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH-------GMRVLIVQFLKG--GRYSGELKALKKLPNVEIERFGKGFVWRMNEEE- 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT-------T--EEEEESS----SS--HHHHHHGGGT--EEEE--TT----GGGHH-
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC-------CCEEEEEEEecC--CCCcCHHHHHHhCCeEEEEEcCCcccccCCCcH-
Confidence 3444678999999888766666544 567888764433 011223333322222322211111000000000
Q ss_pred cCCCcEEEECHHHHHHHHH--hccccccCcccEEEecccccccCCCh--HHHHHHHHHcCCCceEEEEeccCcHHHHHHH
Q 005313 294 DRGVDIVVATPGRLNDILE--MRRISLNQVSYLVLDEADRMLDMGFE--PQIRKIVKEVPARRQTLMYTATWPREVRKIA 369 (703)
Q Consensus 294 ~~g~dIlV~Tp~~L~~~l~--~~~~~l~~~~~IViDEaH~ml~~gf~--~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~ 369 (703)
.+ .......+. ...+.-..+++||+||+-..++.++. ..+..+++..|...-+|++--.+|+++.+.+
T Consensus 76 ---~~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 76 ---ED-----RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp ---HH-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred ---HH-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 01 111222222 12333467999999999988887754 4677778877788878887777887777655
No 347
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.87 E-value=0.24 Score=58.47 Aligned_cols=84 Identities=18% Similarity=0.309 Sum_probs=68.1
Q ss_pred HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccccC
Q 005313 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-AARGL 482 (703)
Q Consensus 409 L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv-~~~GI 482 (703)
+..++.....+.+++|.++|+..|.+.++.+.+ .+.+..+||+++..+|..+++.+.+|+..|||+|.. +...+
T Consensus 274 ~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~ 353 (630)
T TIGR00643 274 ALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV 353 (630)
T ss_pred HHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc
Confidence 344444455677999999999999998887764 467899999999999999999999999999999964 44457
Q ss_pred CCCCccEEEE
Q 005313 483 DIKDIRVVVN 492 (703)
Q Consensus 483 DIp~v~~VI~ 492 (703)
++.++.+||.
T Consensus 354 ~~~~l~lvVI 363 (630)
T TIGR00643 354 EFKRLALVII 363 (630)
T ss_pred cccccceEEE
Confidence 7778888774
No 348
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.76 E-value=0.28 Score=52.62 Aligned_cols=138 Identities=16% Similarity=0.129 Sum_probs=70.0
Q ss_pred CCcHHHHHHHHHHHc----CC---CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005313 196 SPTPIQAQSWPIALQ----SR---DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268 (703)
Q Consensus 196 ~p~piQ~~ai~~il~----gr---dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k 268 (703)
.++|||...|..+.+ ++ -+++.+|.|.||+..+..-+ ....+..... . -|-. ...++.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a--~~llC~~~~~-~-----~Cg~-------C~sC~~ 67 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFS--RALLCQNYQS-E-----ACGF-------CHSCEL 67 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH--HHHcCCCCCC-C-----CCCC-------CHHHHH
Confidence 568999999877763 33 57889999999997654322 2222322111 0 0111 122333
Q ss_pred hcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHc
Q 005313 269 FGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV 348 (703)
Q Consensus 269 ~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l 348 (703)
+.....-.+..+..... +..|-|-..-.+.+.+.. .-....++++|||+||.|... ....+.++++.-
T Consensus 68 ~~~g~HPD~~~i~p~~~----------~~~I~vdqiR~l~~~~~~-~~~~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEP 135 (319)
T PRK06090 68 MQSGNHPDLHVIKPEKE----------GKSITVEQIRQCNRLAQE-SSQLNGYRLFVIEPADAMNES-ASNALLKTLEEP 135 (319)
T ss_pred HHcCCCCCEEEEecCcC----------CCcCCHHHHHHHHHHHhh-CcccCCceEEEecchhhhCHH-HHHHHHHHhcCC
Confidence 33332222222221110 001211111222222222 112346789999999998533 345666777776
Q ss_pred CCCceEEEEecc
Q 005313 349 PARRQTLMYTAT 360 (703)
Q Consensus 349 ~~~~q~L~lSAT 360 (703)
|++..+|++|..
T Consensus 136 p~~t~fiL~t~~ 147 (319)
T PRK06090 136 APNCLFLLVTHN 147 (319)
T ss_pred CCCeEEEEEECC
Confidence 666666666554
No 349
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.75 E-value=0.38 Score=57.59 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=25.7
Q ss_pred cccEEEecccccccCCC----hHHHHHHHHHcCCCceEEEEeccCcHHH
Q 005313 321 VSYLVLDEADRMLDMGF----EPQIRKIVKEVPARRQTLMYTATWPREV 365 (703)
Q Consensus 321 ~~~IViDEaH~ml~~gf----~~~i~~il~~l~~~~q~L~lSAT~p~~v 365 (703)
-.+|+|||+|.+...+- ...+..++..+-...++.++.||-+.+.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 35899999999865432 2233334443333445666666655443
No 350
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.74 E-value=0.32 Score=56.02 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=26.8
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
..+++++||||+|+|.... ...+.+.++..+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3467899999999875432 334555666666667666665
No 351
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.73 E-value=0.07 Score=64.73 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=79.9
Q ss_pred HHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccE
Q 005313 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV 489 (703)
Q Consensus 410 ~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~ 489 (703)
...++......++|||+......+.++..+.-..-.....++ .++....+..|++ --.+|+-+...+.|+|+-+..|
T Consensus 1212 il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~H 1288 (1394)
T KOG0298|consen 1212 ILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATH 1288 (1394)
T ss_pred HHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhh
Confidence 334555566789999999888877777766522111112222 3445566777765 3335777888999999999999
Q ss_pred EEEecCCCCHHHHHHHHhccCCCCCccEEEEEE
Q 005313 490 VVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFF 522 (703)
Q Consensus 490 VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~ 522 (703)
|+..++-.++.+-.|.+||+.|.|++....+..
T Consensus 1289 vfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~ 1321 (1394)
T KOG0298|consen 1289 VFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHR 1321 (1394)
T ss_pred hheeccccCchHHHhhhhhhhhcccccchhhhh
Confidence 999999999999999999999999876555543
No 352
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.32 Score=56.88 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=23.5
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
+...++|||||+|.|.... ...+.+.++..+... ++++.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 3567899999999875422 233444444544444 3444444
No 353
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.49 E-value=0.44 Score=48.36 Aligned_cols=130 Identities=19% Similarity=0.173 Sum_probs=65.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC-------CceEEEeeCC
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS-------RISCTCLYGG 283 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~-------~i~v~~~~gg 283 (703)
+..+++.+++|+|||+-.+--+...+... +.++++++- .+-.+++.+.++.+.-+. .+.+......
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~------ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF------GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH------T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGG
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc------CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccc
Confidence 35678889999999976554444444331 226787774 345566666666654221 1111111111
Q ss_pred CCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCC----ChHHHHHHHHHcCCCceEEEEec
Q 005313 284 APKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG----FEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 284 ~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g----f~~~i~~il~~l~~~~q~L~lSA 359 (703)
... .. -..++.+...+... +.-...+.||||-...+.... +...+..++..+.....+.++++
T Consensus 92 ~~~----------~~--~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 92 RIG----------WS--PNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GST-----------T--SCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccc----------cc--ccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 000 00 12334444433321 111233789999998772222 33455666666655556666666
Q ss_pred c
Q 005313 360 T 360 (703)
Q Consensus 360 T 360 (703)
.
T Consensus 159 ~ 159 (226)
T PF06745_consen 159 E 159 (226)
T ss_dssp E
T ss_pred c
Confidence 6
No 354
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.43 E-value=0.92 Score=50.33 Aligned_cols=54 Identities=7% Similarity=0.076 Sum_probs=30.2
Q ss_pred cCcccEEEeccccccc-CCChHHHHHHHHHc---CCCceEEEEeccCcH-HHHHHHHHh
Q 005313 319 NQVSYLVLDEADRMLD-MGFEPQIRKIVKEV---PARRQTLMYTATWPR-EVRKIAADL 372 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~-~gf~~~i~~il~~l---~~~~q~L~lSAT~p~-~v~~l~~~~ 372 (703)
..+++||||=+-++.. ......+.+++... .+...+|.++||... .+.+.+..|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 5678999997765421 11223344444433 123457889999866 344444433
No 355
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.40 E-value=0.59 Score=51.01 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=27.8
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
....+|||||||.|... -...+.++++..+.+..+|++|..
T Consensus 140 g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 140 GNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEECC
Confidence 46789999999988433 344566677776666666666533
No 356
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.35 E-value=0.27 Score=51.47 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=42.7
Q ss_pred HHhcCCeEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCC-EEEEecCCChHHHHHHHHHHH
Q 005313 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD-IVAIAKTGSGKTLGYLLPGFI 234 (703)
Q Consensus 156 ~~~~~~i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grd-vlv~ApTGsGKTla~llp~l~ 234 (703)
|..+..+-..-.-+|..+.+|+++++|+-+.+.+. ..+. +||.+|||||||.+ +.+++.
T Consensus 88 f~qr~~~a~vlR~Ip~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId 147 (353)
T COG2805 88 FKQRGGYALVLRLIPSKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMID 147 (353)
T ss_pred hhhcCCcEEEEeccCccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHH
Confidence 34443433334456788889999999887766332 2233 56679999999965 666778
Q ss_pred HHhhc
Q 005313 235 HLKRC 239 (703)
Q Consensus 235 ~l~~~ 239 (703)
++.+.
T Consensus 148 ~iN~~ 152 (353)
T COG2805 148 YINKH 152 (353)
T ss_pred HHhcc
Confidence 87663
No 357
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.35 E-value=0.24 Score=56.99 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=27.4
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
....+++||||+|+|... ....+.+.++..+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 346789999999987543 3345566667666666666655
No 358
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.32 E-value=0.47 Score=56.57 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=24.1
Q ss_pred CcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHH
Q 005313 320 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPRE 364 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~ 364 (703)
...+|||||+|++.. .....++..+. ..+++++++|-+..
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCCh
Confidence 456899999998742 22333444343 35577777775443
No 359
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.29 E-value=0.66 Score=49.63 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=29.5
Q ss_pred ccCcccEEEecccccccCCCh--HHHHHHHH-HcCCCceEEEEeccCcHHHHH
Q 005313 318 LNQVSYLVLDEADRMLDMGFE--PQIRKIVK-EVPARRQTLMYTATWPREVRK 367 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~--~~i~~il~-~l~~~~q~L~lSAT~p~~v~~ 367 (703)
+.++++|||||+....-..+. ..+..|+. .+.....+|+.|.-...++.+
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 457889999999743222222 23344544 334566688888776555544
No 360
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.19 E-value=0.35 Score=56.09 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=24.5
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCc
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWP 362 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p 362 (703)
.....++||||+|.|.... ...+.+.++..+....+| +.+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a-~naLLKtLEepp~~~ifI-latt~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGA-FNALLKTLEEPPAHVIFI-LATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHhcCCCCCeEEE-EEeCCh
Confidence 3568899999999874332 233444455544444333 344543
No 361
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.15 E-value=0.67 Score=50.85 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=28.0
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccC
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 361 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~ 361 (703)
.....+|||||+|.|-.. ....+.++++..+....+|++|..+
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 346789999999987432 3445566666666666566655553
No 362
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.11 E-value=0.37 Score=53.17 Aligned_cols=49 Identities=10% Similarity=0.232 Sum_probs=33.4
Q ss_pred CcccEEEecccccccC-CChHHHHHHHHHcCC-CceEEEEeccCcHHHHHH
Q 005313 320 QVSYLVLDEADRMLDM-GFEPQIRKIVKEVPA-RRQTLMYTATWPREVRKI 368 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~-gf~~~i~~il~~l~~-~~q~L~lSAT~p~~v~~l 368 (703)
++++++||.++.+... .....+-.++..+.. ..|+|+.|..+|.++..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 6789999999987554 234555556655543 448888888888776533
No 363
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.07 E-value=0.68 Score=55.69 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.4
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
.++|+++|+|+|||..+-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 589999999999997543
No 364
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.06 E-value=0.22 Score=53.17 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.9
Q ss_pred CEEEEecCCChHHHHH
Q 005313 213 DIVAIAKTGSGKTLGY 228 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ 228 (703)
.+|+++|+|+|||..+
T Consensus 164 SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA 179 (554)
T ss_pred ceEEecCCCCchHHHH
Confidence 7899999999999643
No 365
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.02 E-value=0.96 Score=44.32 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=40.8
Q ss_pred ccCcccEEEecccccccCCCh--HHHHHHHHHcCCCceEEEEeccCcHHHHHHHHH
Q 005313 318 LNQVSYLVLDEADRMLDMGFE--PQIRKIVKEVPARRQTLMYTATWPREVRKIAAD 371 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~--~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~ 371 (703)
-..+++||+||+--++..++. ..+..++..-|....+|+..-..|+.+.+++..
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 346899999999988887754 456677777777777777777788888776643
No 366
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.00 E-value=1 Score=46.00 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=31.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
+.-+++.+++|+|||..++..+...+.. +.+++++.-- +-..++.+.+..+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~-------g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ-------GKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC-------CCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 3457778999999997544333333322 3477777754 33455666666654
No 367
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.97 E-value=0.68 Score=51.54 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=61.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 290 (703)
+.-+.++++||+|||......+-..+..... ....++.+.+.-+. ..+.+..++...++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~----~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~------------ 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGA----DKVALLTTDSYRIG--GHEQLRIYGKLLGVSVR------------ 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----CeEEEEecCCcchh--HHHHHHHHHHHcCCcee------------
Confidence 3457788999999997654332222221110 11345555552221 12223334333333322
Q ss_pred hhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHH-HHHH
Q 005313 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPRE-VRKI 368 (703)
Q Consensus 291 ~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~-v~~l 368 (703)
.+-++..+...+. .+.+.++|+||.+=+.-. ......+..+.....+...+|+++||.... +.+.
T Consensus 253 ---------~v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 253 ---------SIKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ---------cCCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 1222333322222 256778899998743211 011223333322223445678899996444 4444
Q ss_pred HHHh
Q 005313 369 AADL 372 (703)
Q Consensus 369 ~~~~ 372 (703)
+..|
T Consensus 320 ~~~f 323 (420)
T PRK14721 320 ISAY 323 (420)
T ss_pred HHHh
Confidence 4444
No 368
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.15 Score=55.22 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=13.7
Q ss_pred CCEEEEecCCChHHHH
Q 005313 212 RDIVAIAKTGSGKTLG 227 (703)
Q Consensus 212 rdvlv~ApTGsGKTla 227 (703)
+|+++.+|+|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 5789999999999964
No 369
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.91 E-value=0.25 Score=57.77 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=24.8
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
+...++|||||+|.|.... ...+.+.++..++...+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999885432 234445555555555455544
No 370
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.87 E-value=0.52 Score=53.36 Aligned_cols=146 Identities=12% Similarity=0.033 Sum_probs=81.3
Q ss_pred CCCcHHHHHHHHHHHc------C----CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHH
Q 005313 195 SSPTPIQAQSWPIALQ------S----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQD 264 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~------g----rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~ 264 (703)
..+-|||.-++-.|+. + +..+|..|-+-|||..+...++..+.... ..+-.+.|++|+.+-+.+..+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---RSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---hcCCcEEEEeccHHHHHHhhH
Confidence 3678999999988882 1 24677889999999643322222222211 234589999999999999888
Q ss_pred HHHHhcCCCC-ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHH---HHH--hccccccCcccEEEecccccccCCCh
Q 005313 265 EAVKFGKSSR-ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLND---ILE--MRRISLNQVSYLVLDEADRMLDMGFE 338 (703)
Q Consensus 265 ~~~k~~~~~~-i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~---~l~--~~~~~l~~~~~IViDEaH~ml~~gf~ 338 (703)
.++....... +... .....+....+...... .+. ....+-.+..+.||||.|...+.+
T Consensus 137 ~ar~mv~~~~~l~~~--------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 137 PARDMVKRDDDLRDL--------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred HHHHHHHhCcchhhh--------------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--
Confidence 8876554332 1000 00001111222222211 111 123334467899999999864432
Q ss_pred HHHHHHHHHc--CCCceEEEEec
Q 005313 339 PQIRKIVKEV--PARRQTLMYTA 359 (703)
Q Consensus 339 ~~i~~il~~l--~~~~q~L~lSA 359 (703)
..+..+..-+ .++.+++..|.
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEec
Confidence 4455554444 33455555554
No 371
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.80 E-value=0.36 Score=51.93 Aligned_cols=58 Identities=26% Similarity=0.228 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHH-cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 197 PTPIQAQSWPIAL-QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 197 p~piQ~~ai~~il-~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
+++.|.+.|..++ .++++|++++||||||. ++-.++..+..... ..++++|=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~~----~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASAP----EDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCCC----CceEEEecCCcccc
Confidence 4567777765554 45789999999999995 34444444432111 23777777777773
No 372
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.75 E-value=0.071 Score=51.98 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=30.3
Q ss_pred hhhcCCCcEEEECHHHHHHHHHhcccc--ccCcccEEEeccccccc
Q 005313 291 KDIDRGVDIVVATPGRLNDILEMRRIS--LNQVSYLVLDEADRMLD 334 (703)
Q Consensus 291 ~~l~~g~dIlV~Tp~~L~~~l~~~~~~--l~~~~~IViDEaH~ml~ 334 (703)
+.....++|||+++..|++-.....+. ..+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 344455899999999998765443332 23457899999998754
No 373
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.75 E-value=0.26 Score=50.45 Aligned_cols=47 Identities=26% Similarity=0.195 Sum_probs=28.2
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC---cHHHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP---TRELATQI 262 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P---treLa~Q~ 262 (703)
.+.-++|.+++|+|||...+-.++..... .+.++++++. ..+++..+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~------~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK------QGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCceEEEeCCCCHHHHHHHH
Confidence 34567888999999996544333333332 1347888883 34454443
No 374
>PRK05973 replicative DNA helicase; Provisional
Probab=92.71 E-value=0.53 Score=48.35 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=34.8
Q ss_pred HHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 207 IALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 207 ~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
-+..+.-++|.+++|+|||+..+--+...+.. +.+++|++-- +=..|+.+.+..+.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-------Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-------GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 33445667888999999997655444433322 3467777642 33566677776653
No 375
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.66 E-value=0.15 Score=51.31 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=28.9
Q ss_pred ccccc--cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 314 RRISL--NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 314 ~~~~l--~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
.++.+ -+.++||+||||.|-+ +....++..++.+.+..++.+.-.+
T Consensus 105 ~kv~lp~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 105 KKVTLPPGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred hhccCCCCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcc
Confidence 34444 5678999999998854 3455666666666555544443333
No 376
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.62 E-value=0.42 Score=58.50 Aligned_cols=81 Identities=15% Similarity=0.326 Sum_probs=65.9
Q ss_pred HHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccCCCC
Q 005313 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAARGLDIK 485 (703)
Q Consensus 412 ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-v~~~GIDIp 485 (703)
++.....+.+++|.++|+..|.+.++.|++ .+.+..+++..+..++..+++.+++|+.+|||+|. .+...+.+.
T Consensus 493 ~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~ 572 (926)
T TIGR00580 493 AFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFK 572 (926)
T ss_pred HHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcc
Confidence 344444567899999999999999988875 24577899999999999999999999999999996 445567788
Q ss_pred CccEEEE
Q 005313 486 DIRVVVN 492 (703)
Q Consensus 486 ~v~~VI~ 492 (703)
++.+||.
T Consensus 573 ~L~llVI 579 (926)
T TIGR00580 573 DLGLLII 579 (926)
T ss_pred cCCEEEe
Confidence 8888774
No 377
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.61 E-value=0.69 Score=48.07 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHH----cCC-CEEEEecCCChHHHHH
Q 005313 196 SPTPIQAQSWPIAL----QSR-DIVAIAKTGSGKTLGY 228 (703)
Q Consensus 196 ~p~piQ~~ai~~il----~gr-dvlv~ApTGsGKTla~ 228 (703)
.+++.+.+++..+. .+. .+++++++|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 44555666665543 223 5788999999999654
No 378
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.55 E-value=1.3 Score=47.21 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=25.3
Q ss_pred CcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEec
Q 005313 320 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSA 359 (703)
...+|||||+|.+... ....+..+++..+....+|+.+.
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEeC
Confidence 4578999999987432 23455566666666666666543
No 379
>CHL00181 cbbX CbbX; Provisional
Probab=92.49 E-value=1.2 Score=47.22 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=16.0
Q ss_pred CCEEEEecCCChHHHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYLLP 231 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp 231 (703)
.++++.+|+|+|||.++-..
T Consensus 60 ~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45899999999999876543
No 380
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.48 E-value=0.44 Score=55.91 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=22.5
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEE
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 357 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~l 357 (703)
...++|||||||.|... ....+.+.++..+....+|+.
T Consensus 120 ~~~KViIIDEad~Lt~~-a~naLLK~LEePp~~tvfIL~ 157 (620)
T PRK14948 120 ARWKVYVIDECHMLSTA-AFNALLKTLEEPPPRVVFVLA 157 (620)
T ss_pred CCceEEEEECccccCHH-HHHHHHHHHhcCCcCeEEEEE
Confidence 46789999999987432 223444555554444434443
No 381
>PRK04328 hypothetical protein; Provisional
Probab=92.47 E-value=0.75 Score=47.63 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=32.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
+..+++.+++|+|||...+--+...+.. +.++|+++ +.+-..++.+.++.+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~-------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc-------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4567888999999996544333333332 34677776 4455566666666654
No 382
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.45 E-value=0.52 Score=53.48 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=14.3
Q ss_pred EEEEecCCChHHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 214 vlv~ApTGsGKTla~ll 230 (703)
+|+.+|+|+|||..+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999976654
No 383
>PRK04195 replication factor C large subunit; Provisional
Probab=92.40 E-value=0.9 Score=51.88 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.4
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
.+.+|+.+|+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3678999999999996543
No 384
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.38 E-value=1.4 Score=47.41 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=64.5
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 291 (703)
+.+-+.++.|.|||. |+-.+-...-... -.-++.-..+.++.+++..+... .
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~~~--------k~R~HFh~FM~~vH~~l~~l~g~-----------~------- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPGER--------KRRLHFHRFMARVHQRLHTLQGQ-----------T------- 117 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCccc--------cccccHHHHHHHHHHHHHHHcCC-----------C-------
Confidence 567888999999995 3333333222111 12256667788888888776411 1
Q ss_pred hhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHH-cCCCceEEEEeccCcHHH
Q 005313 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE-VPARRQTLMYTATWPREV 365 (703)
Q Consensus 292 ~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~-l~~~~q~L~lSAT~p~~v 365 (703)
+.+- .+.+- ...+..+|+|||+| +.|-+-.-.+..+++. +...+.++.+|.|.|+++
T Consensus 118 ------dpl~----~iA~~------~~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 118 ------DPLP----PIADE------LAAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ------CccH----HHHHH------HHhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 1110 01111 13456789999999 4554433445555554 356788999999998764
No 385
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.26 E-value=0.89 Score=50.37 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=26.1
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
...+++||||+|+|... ....+.++++.-++...+|+.+.+
T Consensus 116 ~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTER-AANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCeEEEEECC
Confidence 46789999999998543 234455666665555544544444
No 386
>PF05729 NACHT: NACHT domain
Probab=92.24 E-value=0.89 Score=42.95 Aligned_cols=38 Identities=13% Similarity=0.341 Sum_probs=23.5
Q ss_pred cEEEecccccccCC-------ChHHHHHHHHH-cCCCceEEEEecc
Q 005313 323 YLVLDEADRMLDMG-------FEPQIRKIVKE-VPARRQTLMYTAT 360 (703)
Q Consensus 323 ~IViDEaH~ml~~g-------f~~~i~~il~~-l~~~~q~L~lSAT 360 (703)
+||||=+|.+.... +...+..++.. +++..++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 48999999886532 22344455554 4566766666654
No 387
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.23 E-value=0.5 Score=54.72 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=23.9
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
....++||||||.|-.. ....+.+.++..+....+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEEEEEC
Confidence 35678999999987432 2344555556555555445444
No 388
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.21 E-value=2 Score=46.32 Aligned_cols=149 Identities=15% Similarity=0.044 Sum_probs=61.7
Q ss_pred EEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH---HHHHHHhcCCCCceEEEeeCCCCCCchhh
Q 005313 215 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI---QDEAVKFGKSSRISCTCLYGGAPKGPQLK 291 (703)
Q Consensus 215 lv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~---~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 291 (703)
|+.++.|+|||.+..+.++..+..... ...++++..+..|...+ ...+..+... .+.+....- .....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP----GRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEW----NDRKI 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS------EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-----SSEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC----CcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccC----CCCcE
Confidence 467899999998876666665544221 13555554444444442 2333344333 222111100 00001
Q ss_pred hhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccC--cHHHHHHH
Q 005313 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW--PREVRKIA 369 (703)
Q Consensus 292 ~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~--p~~v~~l~ 369 (703)
.+.++..|.+.+...-...- .+.=..+++|||||+-.+.+..+...+...+....... .+++|.|+ .....++.
T Consensus 72 ~~~nG~~i~~~~~~~~~~~~---~~~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~~~~~~ 147 (384)
T PF03237_consen 72 ILPNGSRIQFRGADSPDSGD---NIRGFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPGGWFYEIF 147 (384)
T ss_dssp EETTS-EEEEES-----SHH---HHHTS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHHHHH
T ss_pred EecCceEEEEeccccccccc---cccccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCCCceeeee
Confidence 12455667777643211000 11124678999999887654433333333333322222 22444432 33445555
Q ss_pred HHhhcCc
Q 005313 370 ADLLVNP 376 (703)
Q Consensus 370 ~~~l~~~ 376 (703)
...+.+.
T Consensus 148 ~~~~~~~ 154 (384)
T PF03237_consen 148 QRNLDDD 154 (384)
T ss_dssp HHHHCTS
T ss_pred ehhhcCC
Confidence 5555444
No 389
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.17 E-value=1.3 Score=54.25 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
.+.|+++|+|+|||...-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999997543
No 390
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=92.07 E-value=0.11 Score=51.19 Aligned_cols=35 Identities=34% Similarity=0.730 Sum_probs=30.1
Q ss_pred CCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 21 PTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
-.||.+|+.++|+..| .||.|.+++.|||+-|-.+
T Consensus 127 EgLppGW~rv~s~e~G-tyY~~~~~k~tQy~HPc~~ 161 (271)
T KOG1891|consen 127 EGLPPGWKRVFSPEKG-TYYYHEEMKRTQYEHPCIS 161 (271)
T ss_pred ccCCcchhhccccccc-eeeeecccchhhhcCCCCC
Confidence 3689999999999988 5777999999999999654
No 391
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.97 E-value=0.47 Score=54.32 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.3
Q ss_pred EEEEecCCChHHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 214 vlv~ApTGsGKTla~ll 230 (703)
+|+.+|.|+|||.++.+
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 48899999999987654
No 392
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.96 E-value=6.4 Score=42.36 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=33.3
Q ss_pred ccCcccEEEecccccccC-CChHHHHHHHHHc------CCCceEEEEeccCcHHHHHHHHHh
Q 005313 318 LNQVSYLVLDEADRMLDM-GFEPQIRKIVKEV------PARRQTLMYTATWPREVRKIAADL 372 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~-gf~~~i~~il~~l------~~~~q~L~lSAT~p~~v~~l~~~~ 372 (703)
..++++||||=+-++... .....+.++...+ .+...++.++||...+....+..+
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 356899999999876422 2234455554432 244457899999765544444444
No 393
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.84 E-value=0.7 Score=51.35 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=23.2
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
.....+|||||+|.|.... ...+.+.++..++...+|+.+
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 4567899999999985422 223344444444444444433
No 394
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.83 E-value=0.27 Score=57.05 Aligned_cols=78 Identities=26% Similarity=0.487 Sum_probs=58.8
Q ss_pred HHHhcCCCcEEEEcccccccCCCCCccEE--------EEecCCCCHHHHHHHHhccCCCCC-ccEEEEEEe---cCChHH
Q 005313 462 NQFRAGRSPVLVATDVAARGLDIKDIRVV--------VNYDFPTGVEDYVHRIGRTGRAGA-TGVAYTFFG---DQDSRY 529 (703)
Q Consensus 462 ~~F~~G~~~ILVaTdv~~~GIDIp~v~~V--------I~~d~P~s~~~yiQriGRagR~G~-~g~~i~~~~---~~d~~~ 529 (703)
+.|.+|+..|-|-+.+++-||.+..-+.| |-+.+|||.+.-+|..||++|..+ .+.-|+|+. ..+.++
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 46788888898889999999999765544 457899999999999999999876 345555553 346666
Q ss_pred HHHHHHHHHh
Q 005313 530 ASDLIKLLEG 539 (703)
Q Consensus 530 ~~~l~~~l~~ 539 (703)
+.-+.+-|+.
T Consensus 931 AS~VAKRLES 940 (1300)
T KOG1513|consen 931 ASIVAKRLES 940 (1300)
T ss_pred HHHHHHHHHh
Confidence 6665555553
No 395
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.75 E-value=0.5 Score=50.85 Aligned_cols=64 Identities=23% Similarity=0.246 Sum_probs=40.1
Q ss_pred HHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHH
Q 005313 188 EVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 258 (703)
Q Consensus 188 ~l~~~g~~~p~piQ~~ai~~-il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreL 258 (703)
.+.+.|+ +++.|.+.+.. +..+++++++++||+|||. ++-.++..+..... ..++++|-.+.||
T Consensus 126 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~~----~~rivtIEd~~El 190 (319)
T PRK13894 126 QYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQDP----TERVFIIEDTGEI 190 (319)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcCC----CceEEEEcCCCcc
Confidence 3444444 45667777765 4556789999999999994 44444444322111 2377888887776
No 396
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.74 E-value=0.16 Score=51.60 Aligned_cols=14 Identities=43% Similarity=0.444 Sum_probs=11.8
Q ss_pred EEEEecCCChHHHH
Q 005313 214 IVAIAKTGSGKTLG 227 (703)
Q Consensus 214 vlv~ApTGsGKTla 227 (703)
++|.+..|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47889999999963
No 397
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.68 E-value=0.66 Score=56.52 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=16.0
Q ss_pred CCEEEEecCCChHHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ll 230 (703)
+++|+++|+|+|||.++-.
T Consensus 201 ~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 5899999999999976543
No 398
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.68 E-value=0.41 Score=54.13 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=15.4
Q ss_pred CEEEEecCCChHHHHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYLLPG 232 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~ 232 (703)
-+++++|||+|||.+....+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 46778999999998765443
No 399
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.53 E-value=0.44 Score=46.86 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=23.7
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
.....+|||||+|.|... ....+.+.++..++..-+|+++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEE
Confidence 356789999999998532 2233444555544444444443
No 400
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.43 E-value=2.9 Score=46.89 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=33.6
Q ss_pred cCcccEEEeccccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhh
Q 005313 319 NQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLL 373 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l 373 (703)
..+++||||=+-++.. ......+..+...+.+.--++.+.|+...+....+..+.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~ 236 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFN 236 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHH
Confidence 4567889998876531 112334445555555555577888887766666665553
No 401
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.40 E-value=2.9 Score=48.30 Aligned_cols=134 Identities=20% Similarity=0.163 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHHc----C--C-CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 198 TPIQAQSWPIALQ----S--R-DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 198 ~piQ~~ai~~il~----g--r-dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
|--|..|+-.+.. . + -+-+.|.-|-||+.+.-+.+...+.... -.+.|.+|.-|-+..+.+.+-+-+
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gy------snIyvtSPspeNlkTlFeFv~kGf 328 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGY------SNIYVTSPSPENLKTLFEFVFKGF 328 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCc------ceEEEcCCChHHHHHHHHHHHcch
Confidence 5668888754432 1 2 3456699999999887776666665522 257888899888888777665433
Q ss_pred CCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHH-----------------hccccccCcccEEEecccccc
Q 005313 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE-----------------MRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 271 ~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~-----------------~~~~~l~~~~~IViDEaH~ml 333 (703)
...+..-.+ .++||-.|..-+.+.+. .....+...++||||||-.+
T Consensus 329 DaL~Yqeh~----------------Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAAI- 391 (1011)
T KOG2036|consen 329 DALEYQEHV----------------DYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAAAI- 391 (1011)
T ss_pred hhhcchhhc----------------chhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEechhhcC-
Confidence 332211100 01222222222211110 11223567789999999876
Q ss_pred cCCChHHHHHHHHHcCCCceEEEEeccCc
Q 005313 334 DMGFEPQIRKIVKEVPARRQTLMYTATWP 362 (703)
Q Consensus 334 ~~gf~~~i~~il~~l~~~~q~L~lSAT~p 362 (703)
-.+.+++++ ...+++|+.|+.
T Consensus 392 ---PLplvk~Li-----gPylVfmaSTin 412 (1011)
T KOG2036|consen 392 ---PLPLVKKLI-----GPYLVFMASTIN 412 (1011)
T ss_pred ---CHHHHHHhh-----cceeEEEeeccc
Confidence 356666665 234788888863
No 402
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.29 E-value=0.79 Score=48.89 Aligned_cols=58 Identities=26% Similarity=0.285 Sum_probs=36.2
Q ss_pred CcHHHHHHHHH-HHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 197 PTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 197 p~piQ~~ai~~-il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
+++-|.+.|.. +..+++++++++||||||.. +-.++..+.... ...+++++-.+.||.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND----PTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC----CCceEEEECCchhhc
Confidence 34445555544 44567999999999999953 344444443211 123788888888873
No 403
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.25 E-value=0.71 Score=49.42 Aligned_cols=61 Identities=26% Similarity=0.177 Sum_probs=43.7
Q ss_pred CCCCCcHHHHHHHHHHHcCC-CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHH
Q 005313 193 GFSSPTPIQAQSWPIALQSR-DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQ 261 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~gr-dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q 261 (703)
.|..+++-|...+-.+...+ ++|+++.||||||.. +-++...+.. .-++|.+=-|.||..+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~-------~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDS-------DERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCC-------cccEEEEeehhhhccC
Confidence 57788999999998888776 999999999999962 2211111111 1288999898888543
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=91.23 E-value=3.3 Score=46.42 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=31.2
Q ss_pred cCcccEEEeccccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhh
Q 005313 319 NQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLL 373 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l 373 (703)
..+++||||=+=++.. ......+..+...+.+..-++.+.|+...+..+.+..+.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~ 237 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFN 237 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHH
Confidence 3567788887765431 112234444444455555577777776666655555554
No 405
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.21 E-value=1.4 Score=54.01 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
.++|+++|+|+|||...-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999997543
No 406
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.16 E-value=1.3 Score=46.19 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=24.2
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
+.-++|.+++|+|||...+-.+...+.. +.++++++-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~-------Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR-------GNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC-------CCcEEEEEe
Confidence 4567888999999997555433333322 347888773
No 407
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.16 E-value=0.092 Score=48.86 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.6
Q ss_pred CEEEEecCCChHHHHH
Q 005313 213 DIVAIAKTGSGKTLGY 228 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ 228 (703)
+|++++++|+|||..+
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4799999999999643
No 408
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.07 E-value=0.33 Score=56.33 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=86.5
Q ss_pred CCCcHHHHHHHHHHHcCC----------CEEEE--ecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH
Q 005313 195 SSPTPIQAQSWPIALQSR----------DIVAI--AKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 262 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~gr----------dvlv~--ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~ 262 (703)
..+...|.+++-.+.+-. .+||- |..|-|.|++-+ |+....+. -+++|+++-+..|--..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLkG------RKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLKG------RKRALWFSVSSDLKFDA 334 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhcc------cceeEEEEeccccccch
Confidence 467788999997766532 23444 455566675543 33333331 24899999888888777
Q ss_pred HHHHHHhcCCCCceEEEeeCCCCCCchhhhhc--CCCcEEEECHHHHHHHHHhc------------cccccC-cccEEEe
Q 005313 263 QDEAVKFGKSSRISCTCLYGGAPKGPQLKDID--RGVDIVVATPGRLNDILEMR------------RISLNQ-VSYLVLD 327 (703)
Q Consensus 263 ~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~--~g~dIlV~Tp~~L~~~l~~~------------~~~l~~-~~~IViD 327 (703)
...++.++. .+|.+..+.-- .+...-.+.. -.-.|+++|+-.|.--.... .+.-.+ =.+||||
T Consensus 335 ERDL~DigA-~~I~V~alnK~-KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 335 ERDLRDIGA-TGIAVHALNKF-KYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred hhchhhcCC-CCccceehhhc-ccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 777777654 33554433110 0000000000 01359999998775322100 001122 2589999
Q ss_pred cccccccC---------CChHHHHHHHHHcCCCceEEEEecc
Q 005313 328 EADRMLDM---------GFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 328 EaH~ml~~---------gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
|||...+. .....+..+.+.||..+ ++.-|||
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~AR-VVYASAT 453 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNAR-VVYASAT 453 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCCCce-EEEeecc
Confidence 99976441 13345666666676544 7888888
No 409
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.80 E-value=1.2 Score=47.09 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.4
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
.++++.+|+|+|||.++.
T Consensus 59 ~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 478999999999997664
No 410
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.64 E-value=2.5 Score=47.27 Aligned_cols=36 Identities=33% Similarity=0.122 Sum_probs=21.9
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
.-+++.|.+|+|||..++-.+...... .+.+++|++
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~~------~g~~v~~fS 230 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALR------EGKPVLFFS 230 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHh------CCCcEEEEE
Confidence 446777999999996544333333212 134677776
No 411
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.59 E-value=0.99 Score=56.66 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=62.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhcC-----CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccCCCCCccEE
Q 005313 417 EPGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAARGLDIKDIRVV 490 (703)
Q Consensus 417 ~~~~kvLVF~~s~~~a~~la~~L~~~-----~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-v~~~GIDIp~v~~V 490 (703)
..+.+++|.|+|+..|.++++.|.+. +.+..+++..+..++..+++.+++|.++|||+|. .+...+++.++.+|
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 45678999999999999999888752 4567899999999999999999999999999995 44455667778776
Q ss_pred EE
Q 005313 491 VN 492 (703)
Q Consensus 491 I~ 492 (703)
|.
T Consensus 727 VI 728 (1147)
T PRK10689 727 IV 728 (1147)
T ss_pred EE
Confidence 64
No 412
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.58 E-value=0.59 Score=45.81 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=30.1
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCC-ceEEEEecc
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR-RQTLMYTAT 360 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~-~q~L~lSAT 360 (703)
.+.+++|+||...-+|......+.+++..+... .++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 567899999999988877666666666665333 666666544
No 413
>PHA00012 I assembly protein
Probab=90.51 E-value=3.6 Score=44.01 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=31.4
Q ss_pred ccCcccEEEecccccccCC-Ch----HHHHHHHHHcCC-CceEEEEeccCcHHHHHHHHHhhc
Q 005313 318 LNQVSYLVLDEADRMLDMG-FE----PQIRKIVKEVPA-RRQTLMYTATWPREVRKIAADLLV 374 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~g-f~----~~i~~il~~l~~-~~q~L~lSAT~p~~v~~l~~~~l~ 374 (703)
...-.++||||||..+..- +. ..+.+.+..... ..-++++|-.+ ..+...++.++.
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~p-s~VDs~IR~ll~ 140 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDI-SIMDKQAREALA 140 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCH-HHHhHHHHHhhh
Confidence 3566799999999877521 11 224444444333 34456666554 455555555543
No 414
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.43 E-value=2.3 Score=51.89 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=15.3
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
.++|+++|.|+|||...-
T Consensus 209 ~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CceeEECCCCCCHHHHHH
Confidence 589999999999997543
No 415
>PRK06904 replicative DNA helicase; Validated
Probab=90.42 E-value=2.3 Score=48.38 Aligned_cols=113 Identities=19% Similarity=0.095 Sum_probs=53.1
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCC-CCCCchhh
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGG-APKGPQLK 291 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg-~~~~~~~~ 291 (703)
=+|+.|.||.|||.-++ -+...+... .+..|+|++.- .-..|+...+-... .++....+..+ .-....+.
T Consensus 223 LiiIaarPg~GKTafal-nia~~~a~~-----~g~~Vl~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~g~~l~~~e~~ 293 (472)
T PRK06904 223 LIIVAARPSMGKTTFAM-NLCENAAMA-----SEKPVLVFSLE-MPAEQIMMRMLASL--SRVDQTKIRTGQNLDQQDWA 293 (472)
T ss_pred EEEEEeCCCCChHHHHH-HHHHHHHHh-----cCCeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHhccCCCCCHHHHH
Confidence 45667899999996443 232222210 13467777642 33444444433222 22221112112 11222222
Q ss_pred -------hhcCCCcEEE-----ECHHHHHHHHHhccccccCcccEEEeccccccc
Q 005313 292 -------DIDRGVDIVV-----ATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 334 (703)
Q Consensus 292 -------~l~~g~dIlV-----~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~ 334 (703)
.+.....+.| .|+..+...+..-......+++||||=.+.|..
T Consensus 294 ~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 294 KISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 2222344665 355555544432221223578999999987753
No 416
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=90.35 E-value=1.2 Score=47.92 Aligned_cols=55 Identities=11% Similarity=0.173 Sum_probs=33.3
Q ss_pred CHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 303 TPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 303 Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
....+.+.+..... ....++|||||||.|-.. ....+.++++..+ +..+|+++..
T Consensus 108 ~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 108 QIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 33344444443332 356899999999988433 3455666777766 6655555543
No 417
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=90.31 E-value=1.5 Score=42.93 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=41.6
Q ss_pred ccCcccEEEecccccccCCCh--HHHHHHHHHcCCCceEEEEeccCcHHHHHHH
Q 005313 318 LNQVSYLVLDEADRMLDMGFE--PQIRKIVKEVPARRQTLMYTATWPREVRKIA 369 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~--~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~ 369 (703)
-..+++||+||+-..++.++. ..+.++++..|+..-+|++--.+|+++.+++
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 467899999999988887753 5677788888888888888888888877654
No 418
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.19 E-value=0.56 Score=49.88 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.1
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
..+++.+|+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999643
No 419
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.18 E-value=1 Score=52.95 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=26.2
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
....++|||||+|.|... ....+.++++..+....+| |.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEEE-EEeC
Confidence 456889999999988543 2345556666655555444 4444
No 420
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.95 E-value=0.43 Score=54.87 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=35.1
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEecCCChHHHHHHHHHHHHHhh
Q 005313 196 SPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKR 238 (703)
Q Consensus 196 ~p~piQ~~ai~~il----~grdvlv~ApTGsGKTla~llp~l~~l~~ 238 (703)
+||.||.+.+..+. +|+--|+..|||+|||+..+-.++.+|..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 78899998886654 57877888999999999888777777754
No 421
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.90 E-value=1.1 Score=51.45 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=28.0
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
...++++||||||+|... ....+.+.++..++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 356889999999987543 3345666677767777666665
No 422
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=89.89 E-value=0.34 Score=55.04 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=24.4
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
..++++.||||+|+|... -...+.+.++.-|....+|+.|
T Consensus 117 ~~ryKVyiIDEvHMLS~~-afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQ-AFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHH-HHHHHhcccccCccCeEEEEec
Confidence 457899999999965433 3344444455555555444444
No 423
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.85 E-value=0.73 Score=54.57 Aligned_cols=96 Identities=19% Similarity=0.273 Sum_probs=74.9
Q ss_pred EEEEeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHhcC--CceeEecCCCCHHHHHHHHHHHhcCCCcEE
Q 005313 396 HIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ--FGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472 (703)
Q Consensus 396 ~~~~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~~~--~~~~~lhg~~~~~eR~~vl~~F~~G~~~IL 472 (703)
.+..++...|.+.+.+++... ..++.+||.++-+....++...|+.. ..++++|+++++.+|...+.+.++|+.+|+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 345667777888887777654 66789999999998888888888764 468899999999999999999999999999
Q ss_pred EEcccccccCCCCCccEEEE
Q 005313 473 VATDVAARGLDIKDIRVVVN 492 (703)
Q Consensus 473 VaTdv~~~GIDIp~v~~VI~ 492 (703)
|.|-.+-- .-++++.+||.
T Consensus 301 IGtRSAlF-~Pf~~LGLIIv 319 (730)
T COG1198 301 IGTRSALF-LPFKNLGLIIV 319 (730)
T ss_pred EEechhhc-CchhhccEEEE
Confidence 99964321 23445565553
No 424
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=89.71 E-value=0.73 Score=45.17 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=27.9
Q ss_pred HHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH
Q 005313 206 PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 262 (703)
Q Consensus 206 ~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~ 262 (703)
..+.+++++++.+++|+|||..+...+...+.. +..++++ ...+|+.++
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEAIRK-------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEE-EHHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccC-------CcceeEe-ecCceeccc
Confidence 334456889999999999997655433333332 3356664 455676654
No 425
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.59 E-value=0.89 Score=53.83 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=23.9
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
....++||||||.|... ....+.+.++..+....+|+.+
T Consensus 117 g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCceEEEEEc
Confidence 56789999999987432 2334445555555555444444
No 426
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=89.54 E-value=1.3 Score=46.07 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=55.0
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc---HHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCch
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT---RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 289 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt---reLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~ 289 (703)
=+++.|.||.|||..++-.+....... +..|++++.- .+++..+...... +....+..+......
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~------~~~vly~SlEm~~~~l~~R~la~~s~------v~~~~i~~g~l~~~e 88 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNG------GYPVLYFSLEMSEEELAARLLARLSG------VPYNKIRSGDLSDEE 88 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT------SSEEEEEESSS-HHHHHHHHHHHHHT------STHHHHHCCGCHHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhc------CCeEEEEcCCCCHHHHHHHHHHHhhc------chhhhhhccccCHHH
Confidence 456679999999976555444444331 2478888852 3443333222211 111111111111111
Q ss_pred hhh-------hcCCCcEEE-E----CHHHHHHHHHhccccccCcccEEEeccccccc
Q 005313 290 LKD-------IDRGVDIVV-A----TPGRLNDILEMRRISLNQVSYLVLDEADRMLD 334 (703)
Q Consensus 290 ~~~-------l~~g~dIlV-~----Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~ 334 (703)
+.. +.. ..++| . |++.|.+.+..-......+++||||=+|.|..
T Consensus 89 ~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 89 FERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 111 222 23333 2 44566655553333336789999999998765
No 427
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.53 E-value=1.1 Score=50.53 Aligned_cols=52 Identities=27% Similarity=0.245 Sum_probs=32.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
+.-+++.+++|+|||...+..+.. +.. .+.++|++.-- |-..|+...+.++.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~-~a~------~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQ-LAK------NQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HHh------cCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 355778899999999755433222 222 12368888763 55677766666553
No 428
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.50 E-value=0.96 Score=50.07 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=30.6
Q ss_pred cCcccEEEecccccccCC--------ChHHHHHHHHH----cCCCceEEEEecc-CcHHHHHHHHH
Q 005313 319 NQVSYLVLDEADRMLDMG--------FEPQIRKIVKE----VPARRQTLMYTAT-WPREVRKIAAD 371 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~g--------f~~~i~~il~~----l~~~~q~L~lSAT-~p~~v~~l~~~ 371 (703)
.+..+|+|||+|.++..- .....+.++.. ..++-+++++.|| .|.++.+.+..
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 356789999999876321 11222223322 3344578999999 45555554444
No 429
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=0.47 Score=51.96 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=14.6
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
.|+|+.+|||+|||+.+
T Consensus 227 SNvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA 243 (564)
T ss_pred ccEEEECCCCCchhHHH
Confidence 47899999999999744
No 430
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.40 E-value=0.95 Score=48.98 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=29.9
Q ss_pred HHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 206 PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 206 ~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
.++..+++++++++||||||. ++-.++..+.. ..++++|=-+.||.
T Consensus 155 ~~v~~~~nili~G~tgSGKTT-ll~aL~~~ip~-------~~ri~tiEd~~El~ 200 (332)
T PRK13900 155 HAVISKKNIIISGGTSTGKTT-FTNAALREIPA-------IERLITVEDAREIV 200 (332)
T ss_pred HHHHcCCcEEEECCCCCCHHH-HHHHHHhhCCC-------CCeEEEecCCCccc
Confidence 345567899999999999995 34444444322 23677766666653
No 431
>PRK09354 recA recombinase A; Provisional
Probab=89.30 E-value=1.4 Score=47.89 Aligned_cols=43 Identities=23% Similarity=0.121 Sum_probs=28.4
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 260 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~ 260 (703)
++-+.|.+|+|+|||..++..+...... +.+++||..--.+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~-------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA-------GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEECCccchHH
Confidence 3456788999999997665544444322 457888877555543
No 432
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.29 E-value=1.3 Score=49.95 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=24.0
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
....+|||||+|.|... ....+.+.++..+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCceEEEEe
Confidence 46789999999987532 2234455555555555455444
No 433
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=2.2 Score=47.97 Aligned_cols=68 Identities=26% Similarity=0.214 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHH----HHHHc---C-----CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCC
Q 005313 179 TGFPPELLREVHNAGFSSPTPIQAQSW----PIALQ---S-----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLG 246 (703)
Q Consensus 179 ~~l~~~l~~~l~~~g~~~p~piQ~~ai----~~il~---g-----rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g 246 (703)
++..++.++.+...|...-.+.=.+.+ ..+.+ . ..+|+.+|.|+|||..+.- ..+.. .-
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~---iA~~S------~F 564 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAK---IALSS------DF 564 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHH---HHhhc------CC
Confidence 678888888888777654333333333 22221 1 2578899999999953221 11111 24
Q ss_pred CEEEEEcCc
Q 005313 247 PTVLVLSPT 255 (703)
Q Consensus 247 ~~vLIl~Pt 255 (703)
|.+=|++|.
T Consensus 565 PFvKiiSpe 573 (744)
T KOG0741|consen 565 PFVKIISPE 573 (744)
T ss_pred CeEEEeChH
Confidence 677777774
No 434
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.22 E-value=0.52 Score=51.16 Aligned_cols=47 Identities=19% Similarity=0.158 Sum_probs=30.9
Q ss_pred HHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 205 WPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 205 i~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
..++..+++++++++||||||.. +-.++..+.. ..+++.|-.+.||.
T Consensus 156 ~~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~-------~~rivtiEd~~El~ 202 (344)
T PRK13851 156 HACVVGRLTMLLCGPTGSGKTTM-SKTLISAIPP-------QERLITIEDTLELV 202 (344)
T ss_pred HHHHHcCCeEEEECCCCccHHHH-HHHHHcccCC-------CCCEEEECCCcccc
Confidence 34555678999999999999953 3333333221 23677777877773
No 435
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.18 E-value=0.81 Score=53.12 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=23.7
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
....+++||||+|.|... ....+.+.++..++...+| +.+|
T Consensus 117 ~~~~KVvIIDEa~~Ls~~-a~naLLK~LEepp~~~vfI-~~tt 157 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS-AFNALLKTIEEPPPYIVFI-FATT 157 (563)
T ss_pred cCCCEEEEEEChhhcCHH-HHHHHHHhhccCCCCEEEE-EecC
Confidence 357789999999987433 2233444455444444444 4444
No 436
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.17 E-value=1.9 Score=43.57 Aligned_cols=52 Identities=31% Similarity=0.275 Sum_probs=33.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
+.-+++.+++|+|||..++--+...+.. +.++++++- .+-.+|+.+.+..+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~-------g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN-------GEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 3567788999999996544333333322 346777765 355677777776664
No 437
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=89.15 E-value=1.6 Score=42.73 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=22.5
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
.++.+|+.||||.-.+ -.+..+.. .+.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~eLi-~~~~~~~~------~~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTELI-RRIHRYEI------AGKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHHHH-HHHHHHHH------TT-EEEEEEES
T ss_pred EEEECCcCChhHHHHH-HHHHHHHh------CCCeEEEEEec
Confidence 4677999999996533 33333322 24588998885
No 438
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=89.00 E-value=1.7 Score=51.65 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=71.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.+++-|.+++... ...++|.|..|||||.+..--+..++......+. .+|.|+=|+..|.++.+.+.++.....
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~---~Il~vTFTnkAA~em~~Rl~~~~~~~~- 75 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPE---QILAITFTNKAAAEMRERLLKLLGLPA- 75 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChH---HeeeeechHHHHHHHHHHHHHHhCccc-
Confidence 5788899998776 5678888999999998865555455544333332 589999999999999998888754300
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcccc-c-cCcccEEEeccc
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS-L-NQVSYLVLDEAD 330 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~-l-~~~~~IViDEaH 330 (703)
. ..+.|+|...+...+...... . -.-.+-|+|+.+
T Consensus 76 --------~------------~~~~v~TfHs~~~~~lr~~~~~~~~~~~~~i~d~~d 112 (655)
T COG0210 76 --------A------------EGLTVGTFHSFALRILRRHGERLGLNANFTILDSDD 112 (655)
T ss_pred --------c------------cCcEEeeHHHHHHHHHHHHHHhcCCCCCCEEecHHH
Confidence 0 127788888876544322111 1 123445666655
No 439
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=88.97 E-value=1.9 Score=49.32 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.2
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
.+.+|+.+|+|+|||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 367999999999999753
No 440
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=88.86 E-value=3.8 Score=47.23 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=73.7
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHH----HHhcCCCCceEEEeeCCCCCC
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA----VKFGKSSRISCTCLYGGAPKG 287 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~----~k~~~~~~i~v~~~~gg~~~~ 287 (703)
|-.+..-|---|||. |++|++..+...-. +.++.++++-+..++-+.+++ ++|.....+ ....+
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s~~----gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v--i~~k~----- 270 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKNII----GISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT--IENKD----- 270 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHhhc----CceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce--eeecC-----
Confidence 344556699999996 57777777665322 468999999988777655554 444433222 11111
Q ss_pred chhhhhcCCCcEEEECHHH-----HHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHc-CCCceEEEEecc
Q 005313 288 PQLKDIDRGVDIVVATPGR-----LNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARRQTLMYTAT 360 (703)
Q Consensus 288 ~~~~~l~~g~dIlV~Tp~~-----L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l-~~~~q~L~lSAT 360 (703)
..|.+.-|+. +....+.+.+.-+.+++++|||||-+ -...+..|+-.+ .++.++|..|-|
T Consensus 271 ---------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 271 ---------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ---------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcccCceEEEEeCC
Confidence 1122222211 11222334455678999999999965 234555665554 456788888877
No 441
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=88.85 E-value=3 Score=44.83 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=19.1
Q ss_pred HHHHHcCCCEEEEecCCChHHHHH
Q 005313 205 WPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 205 i~~il~grdvlv~ApTGsGKTla~ 228 (703)
+-.+..++++++.+++|+|||..+
T Consensus 58 l~~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 58 CAGFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHhcCCcEEEEeCCCChHHHHH
Confidence 334556789999999999999643
No 442
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.78 E-value=0.75 Score=54.41 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=38.0
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCc
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWP 362 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p 362 (703)
...-++|||.-|++.+......+..+++..|++..+++.|-+-|
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 34458999999999888888899999999999999999988754
No 443
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=88.57 E-value=0.21 Score=49.67 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=12.4
Q ss_pred EEEEecCCChHHHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYLLP 231 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp 231 (703)
.++++.+|+|||+-++.-
T Consensus 3 ~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEE--TTSSHHHHHHHH
T ss_pred EEEEcCCCCcHhHHHHHH
Confidence 467899999999766554
No 444
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=88.46 E-value=5.1 Score=41.03 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=28.4
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhcc-----CCCCCCCEEEEEc---CcHHHHHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCR-----NDPRLGPTVLVLS---PTRELATQIQDE 265 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~-----~~~~~g~~vLIl~---PtreLa~Q~~~~ 265 (703)
.+++++.|+|||...+-.++....-.. .....+.+|||++ |..++...+...
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i 63 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAI 63 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHH
Confidence 578899999999765544443221100 0111244788888 444444444333
No 445
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=88.45 E-value=0.8 Score=49.53 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=27.8
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEec
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSA 359 (703)
....+++||||+|+|-.. ....+.+.++..++...+|+++.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 346789999999988543 34456666666666666666444
No 446
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=88.35 E-value=1.4 Score=47.48 Aligned_cols=43 Identities=28% Similarity=0.141 Sum_probs=27.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 260 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~ 260 (703)
++-+.+.+|+|+|||..++..+...... +.+++||..--.+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~-------g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL-------GGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCCEEEECccccHHH
Confidence 3456788999999997655444333322 447888887554443
No 447
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.34 E-value=4.7 Score=49.60 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=33.9
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCc
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWP 362 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p 362 (703)
..--+||||++|.+-+......+..++..+++...+|+.|-+.|
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 33457999999987555455678888888999998988887743
No 448
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.26 E-value=0.93 Score=51.69 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=22.6
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEE
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 357 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~l 357 (703)
.....++||||||.|.... ...+.+.++..++..-+|+.
T Consensus 117 ~~~~KVvIIDEad~Lt~~a-~naLLk~LEepp~~~v~Il~ 155 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEA-FNALLKTLEEPPPRTIFILC 155 (486)
T ss_pred cCCeeEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEE
Confidence 3467899999999774332 23344445554444434443
No 449
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.13 E-value=1.2 Score=47.79 Aligned_cols=41 Identities=27% Similarity=0.130 Sum_probs=26.0
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
+-+++.+|+|+|||..++..+...... +.++++|..-..+-
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~-------g~~v~yId~E~~~~ 96 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKA-------GGTAAFIDAEHALD 96 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEcccchhH
Confidence 457788999999997655444333322 44778776544343
No 450
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.61 E-value=2.5 Score=48.35 Aligned_cols=61 Identities=20% Similarity=0.096 Sum_probs=41.0
Q ss_pred HHHHHHHHcC-----CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 202 AQSWPIALQS-----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 202 ~~ai~~il~g-----rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
...++.++.| .-+++.+++|+|||+..+.-+...+.. +.++|+++ ..|-..|+...++.++
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-------ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-------KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 3456666654 467888999999997544433333322 34788877 4677888888887765
No 451
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.55 E-value=1.1 Score=49.05 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=18.1
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHL 236 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l 236 (703)
.+..+++++|||||||.. +..++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 345688899999999964 34444444
No 452
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.51 E-value=8.2 Score=44.44 Aligned_cols=67 Identities=24% Similarity=0.430 Sum_probs=53.6
Q ss_pred EEEEcCCHHHHHHHHHHHhc------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccc-CCCCCccE
Q 005313 422 IIVFCSTKKMCDQLARNLTR------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAARG-LDIKDIRV 489 (703)
Q Consensus 422 vLVF~~s~~~a~~la~~L~~------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~G-IDIp~v~~ 489 (703)
+||+++|++.|.++++.+.. .+.++.++|+++...+... ++.| .+|||+|+ .+.++ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 89999999999999887753 3568899999887666544 4446 99999994 66666 88888988
Q ss_pred EEE
Q 005313 490 VVN 492 (703)
Q Consensus 490 VI~ 492 (703)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 775
No 453
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.47 E-value=1 Score=44.99 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=24.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
+.-+.+.+++|+|||...+..+...... +.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~-------g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ-------GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECC
Confidence 3456788999999997655444333322 3467777764
No 454
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.42 E-value=1.6 Score=45.47 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.7
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
.++++.+|+|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 368999999999996544
No 455
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.34 E-value=1.5 Score=43.90 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=28.3
Q ss_pred ECHHHHHHHHHhccccccCcccEEEecccccc-c----CCChHHHHHHHHHcC-CCceEEEEeccC
Q 005313 302 ATPGRLNDILEMRRISLNQVSYLVLDEADRML-D----MGFEPQIRKIVKEVP-ARRQTLMYTATW 361 (703)
Q Consensus 302 ~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml-~----~gf~~~i~~il~~l~-~~~q~L~lSAT~ 361 (703)
.+...+.+.+...... -+|||||+|.+. . ..+...+..++..+. .....++++++-
T Consensus 104 ~~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 3444555555432221 579999999988 2 123445555555522 223345566664
No 456
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=87.33 E-value=3.2 Score=48.23 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccc
Q 005313 406 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAA 479 (703)
Q Consensus 406 ~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-v~~ 479 (703)
.-.+...+.....+..+.+.++|.--|++-+..|.+ ++.+..+.|.+...+|+++++...+|+++|+|.|- .+.
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 344555666677788999999997666665555543 56799999999999999999999999999999995 557
Q ss_pred ccCCCCCccEEEE
Q 005313 480 RGLDIKDIRVVVN 492 (703)
Q Consensus 480 ~GIDIp~v~~VI~ 492 (703)
..|++.++-+||.
T Consensus 378 d~V~F~~LgLVIi 390 (677)
T COG1200 378 DKVEFHNLGLVII 390 (677)
T ss_pred cceeecceeEEEE
Confidence 7889988888874
No 457
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.28 E-value=7 Score=41.88 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=70.0
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC-c-HHHH-HHHHHHHHHhcCCCCceEEEe-eCCCCCCch
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP-T-RELA-TQIQDEAVKFGKSSRISCTCL-YGGAPKGPQ 289 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P-t-reLa-~Q~~~~~~k~~~~~~i~v~~~-~gg~~~~~~ 289 (703)
+++++-.|+|||.+.--.+..+... +.+||+.+- | |+=| +|+..|.++ .++.++.. .|..+-
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~-------g~~VllaA~DTFRAaAiEQL~~w~er----~gv~vI~~~~G~DpA--- 207 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQ-------GKSVLLAAGDTFRAAAIEQLEVWGER----LGVPVISGKEGADPA--- 207 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHC-------CCeEEEEecchHHHHHHHHHHHHHHH----hCCeEEccCCCCCcH---
Confidence 5667999999998754333333322 446666553 2 4433 333333333 44444331 222111
Q ss_pred hhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccC-CChHHHHHHHHHcCCCc------eEEEEeccCc
Q 005313 290 LKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARR------QTLMYTATWP 362 (703)
Q Consensus 290 ~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~-gf~~~i~~il~~l~~~~------q~L~lSAT~p 362 (703)
- -..+.++. .....+++|++|=|=||-+. .....+++|..-+.+.. -+|.+=||..
T Consensus 208 --------a-------VafDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 208 --------A-------VAFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred --------H-------HHHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 0 12233332 22457889999999988653 24566677766655443 3455589987
Q ss_pred HHHHHHHHHh
Q 005313 363 REVRKIAADL 372 (703)
Q Consensus 363 ~~v~~l~~~~ 372 (703)
.+-...++.|
T Consensus 271 qnal~QAk~F 280 (340)
T COG0552 271 QNALSQAKIF 280 (340)
T ss_pred hhHHHHHHHH
Confidence 7766655555
No 458
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.26 E-value=1.6 Score=47.89 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=36.9
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEE
Q 005313 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl 252 (703)
+.+++++++++.+++.+. .....+++++|||||||.. +..++.++..... ..+++.|
T Consensus 129 ~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~~~~~----~~~Ivti 185 (372)
T TIGR02525 129 IPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCGETYP----DRKIVTY 185 (372)
T ss_pred CCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHHhcCC----CceEEEE
Confidence 346777888876654332 1234678899999999953 4555555543111 1255655
Q ss_pred cCcHHH
Q 005313 253 SPTREL 258 (703)
Q Consensus 253 ~PtreL 258 (703)
=...|+
T Consensus 186 Edp~E~ 191 (372)
T TIGR02525 186 EDPIEY 191 (372)
T ss_pred ecCchh
Confidence 444444
No 459
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.21 E-value=2.3 Score=46.92 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCChHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla 227 (703)
.|+.+++++++|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 578899999999999964
No 460
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=87.04 E-value=3.8 Score=41.17 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=26.7
Q ss_pred HHHHHHc-----CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 204 SWPIALQ-----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 204 ai~~il~-----grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
.++.++. +.-+++.+++|+|||...+..+...... +.+++++.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-------g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-------GKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEE
Confidence 3555564 3456788999999997655443333221 34788873
No 461
>PRK08506 replicative DNA helicase; Provisional
Probab=86.98 E-value=1.9 Score=49.12 Aligned_cols=111 Identities=17% Similarity=0.129 Sum_probs=52.6
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 291 (703)
.-+|+.|.||.|||..++-.+...+ . .+.+|+|++. ..=..|+...+-... .++....+..+.-....+.
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~-~------~g~~V~~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKAL-N------QDKGVAFFSL-EMPAEQLMLRMLSAK--TSIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHH-h------cCCcEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHH
Confidence 3456679999999965444333332 1 1346777754 233444444443221 1221111111111112222
Q ss_pred -------hhcCCCcEEEE-----CHHHHHHHHHhccccccCcccEEEecccccc
Q 005313 292 -------DIDRGVDIVVA-----TPGRLNDILEMRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 292 -------~l~~g~dIlV~-----Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml 333 (703)
.+.. ..+.|. |+..+...+..-......+++||||=.+.|.
T Consensus 263 ~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 1222 345553 4555554444222122357899999998764
No 462
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.96 E-value=1.1 Score=48.51 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=13.9
Q ss_pred CEEEEecCCChHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 213 dvlv~ApTGsGKTla~l 229 (703)
.+|+.+|.|+|||..+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999997554
No 463
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.80 E-value=2.4 Score=47.81 Aligned_cols=54 Identities=13% Similarity=0.340 Sum_probs=31.0
Q ss_pred ccCcccEEEeccccccc--------CC-ChHHHHHHHHHcC-----CCceEEEEeccCcHHHHHHHHHhhcCc
Q 005313 318 LNQVSYLVLDEADRMLD--------MG-FEPQIRKIVKEVP-----ARRQTLMYTATWPREVRKIAADLLVNP 376 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~--------~g-f~~~i~~il~~l~-----~~~q~L~lSAT~p~~v~~l~~~~l~~~ 376 (703)
-+.+.+||+||+|.+.. .| ....+..++..+. .+.-+|+||.- .+++.+.+..|
T Consensus 322 ~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR-----~DlIDEALLRP 389 (744)
T KOG0741|consen 322 NSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNR-----KDLIDEALLRP 389 (744)
T ss_pred cCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCc-----hhhHHHHhcCC
Confidence 45678899999996532 22 3345566666553 24445666654 34444444444
No 464
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=86.79 E-value=0.46 Score=53.91 Aligned_cols=50 Identities=28% Similarity=0.502 Sum_probs=39.5
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
.+++++|+||||||..+++|.+... ...+||+-|--||.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~---------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY---------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc---------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999999976432 1268888999999888777666654
No 465
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.79 E-value=0.79 Score=49.34 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=31.4
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHH----HHHHcCCCEEEEecCCChHHHHH
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSW----PIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai----~~il~grdvlv~ApTGsGKTla~ 228 (703)
.+|.+.+=.+.+.+.++..=.. |.|.--+ ..+..-+.+++.+|+|+|||+.+
T Consensus 89 v~f~DIggLe~v~~~L~e~Vil---Plr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVIL---PLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eehhhccchHHHHHHHHHHHhh---cccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 5788877667777777654221 1111111 11123368999999999999754
No 466
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=86.77 E-value=0.3 Score=53.92 Aligned_cols=48 Identities=25% Similarity=0.466 Sum_probs=37.3
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
+++++++||+|||.++++|.+... ...+||+=|.-||........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~---------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW---------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC---------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999988865532 137899999999988776665554
No 467
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=86.77 E-value=1.7 Score=52.42 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.4
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
+.+++.+|+|+|||+.+
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999999643
No 468
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=86.71 E-value=3 Score=45.27 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=21.2
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCCC
Q 005313 170 PPPFMSFDATGFPPELLREVHNAGFSS 196 (703)
Q Consensus 170 p~p~~sf~~~~l~~~l~~~l~~~g~~~ 196 (703)
+.++..+...++.+..++.|+..||.+
T Consensus 28 ~~~~~~l~~~g~~~~~~~kL~~~g~~t 54 (344)
T PLN03187 28 FESIDKLISQGINAGDVKKLQDAGIYT 54 (344)
T ss_pred ccCHHHHhhCCCCHHHHHHHHHcCCCc
Confidence 556677777888999999888888853
No 469
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=86.61 E-value=3.9 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=20.2
Q ss_pred HHHHcCCCEEEEecCCChHHHHHH
Q 005313 206 PIALQSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 206 ~~il~grdvlv~ApTGsGKTla~l 229 (703)
+.+..+.|++..+|+|+|||..|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 667778899999999999996544
No 470
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.42 E-value=3.6 Score=47.21 Aligned_cols=53 Identities=25% Similarity=0.316 Sum_probs=30.8
Q ss_pred CCCCCcCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNA---GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~---g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla 227 (703)
|-.+|++.+-..++...|... .++.|-.|+.-.|. .-..+|+++|+|+|||+.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLL 561 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHH
Confidence 446788877666666655432 22222222222111 135799999999999964
No 471
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.37 E-value=7.2 Score=47.32 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=14.6
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
..+++++|+|+|||..+-
T Consensus 348 ~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGK 365 (775)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468889999999996543
No 472
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.27 E-value=2.1 Score=47.36 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.7
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
+.+|+.+|+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 57999999999999753
No 473
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=86.27 E-value=3.1 Score=45.79 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCChHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla 227 (703)
.|+..+|++|.|+|||..
T Consensus 168 kGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cCceEEEeCCCCCChhHH
Confidence 678899999999999953
No 474
>CHL00176 ftsH cell division protein; Validated
Probab=86.12 E-value=4 Score=48.12 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.6
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
+.+|+.+|+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999643
No 475
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=86.10 E-value=2.1 Score=51.59 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----C-CceeE-ecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----Q-FGAAA-IHGDKSQSERDYVLNQFRAGRSPVLVATDV 477 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~-~~~~~-lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv 477 (703)
.++++++.++|...+.+.++.|.. . +.+.. +|+.++.++++.++++|.+|..+|||+|..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 457999999999988888888763 1 22222 999999999999999999999999999964
No 476
>PRK13764 ATPase; Provisional
Probab=86.07 E-value=1.5 Score=50.96 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=26.0
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 258 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreL 258 (703)
..++++++++||||||. ++..++.++.. .+..++.+--.+||
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~~------~~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYAD------MGKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHhh------CCCEEEEECCCccc
Confidence 35789999999999995 34444545432 12244455555555
No 477
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=86.04 E-value=1.1 Score=52.18 Aligned_cols=40 Identities=35% Similarity=0.448 Sum_probs=29.9
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEE
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 357 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~l 357 (703)
+.+-.++|+|||..-+|..-+..+.+.+..+.+++.+|+.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiI 520 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEE
Confidence 4556889999999999988888888887766555544443
No 478
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.94 E-value=2.9 Score=46.44 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=30.9
Q ss_pred CCCCCcCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNA---GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~---g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ 228 (703)
|-.+|++.+-.+...+.+... -+..+.-++..- +...+.+++.+|+|+|||+.+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 446788876655555555432 122222122111 113478999999999999754
No 479
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.91 E-value=1.9 Score=46.83 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=26.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
+..+++++|||||||.. +..++..+... ...+++.+-...|+.
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~-----~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN-----AAGHIITIEDPIEYV 164 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC-----CCCEEEEEcCChhhh
Confidence 45688899999999964 33334433221 123677776655553
No 480
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=85.81 E-value=4.1 Score=44.29 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=33.2
Q ss_pred cCcccEEEecccccccCC--ChHHHHHHHHHcCCCceEEEEeccCcHH
Q 005313 319 NQVSYLVLDEADRMLDMG--FEPQIRKIVKEVPARRQTLMYTATWPRE 364 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~g--f~~~i~~il~~l~~~~q~L~lSAT~p~~ 364 (703)
+..-+||+|-|+.+-|++ ..+.+..+.+.++...-.|.+|++....
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 345689999999998887 3345555566666666678899997643
No 481
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.75 E-value=7.1 Score=44.49 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=72.6
Q ss_pred CCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCC---chhhhhcCC
Q 005313 220 TGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG---PQLKDIDRG 296 (703)
Q Consensus 220 TGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~---~~~~~l~~g 296 (703)
+..||+..-++++.+.+... ..|++||.+-+.+-|.|+++++. ...++.+.++++..... +.+..++.+
T Consensus 366 vF~gse~~K~lA~rq~v~~g-----~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g 437 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG-----FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIG 437 (593)
T ss_pred eeeecchhHHHHHHHHHhcc-----CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhcc
Confidence 46788888777777776653 45789999999999999999887 33568888888875433 233344443
Q ss_pred -CcEEEECHHHHHHHHHhccccccCcccEEEecccc
Q 005313 297 -VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331 (703)
Q Consensus 297 -~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ 331 (703)
..|+||| +++.+ .+++..+.+||.+.+-.
T Consensus 438 ~IwvLicT-----dll~R-GiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 438 KIWVLICT-----DLLAR-GIDFKGVNLVINYDFPQ 467 (593)
T ss_pred CeeEEEeh-----hhhhc-cccccCcceEEecCCCc
Confidence 7899999 55554 58899999999977664
No 482
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=85.74 E-value=31 Score=36.61 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=33.8
Q ss_pred ccEEEecccccccCCChHHHHHHHHHcC-------CCceEEEEeccCcHHHHHHHHHhhcC
Q 005313 322 SYLVLDEADRMLDMGFEPQIRKIVKEVP-------ARRQTLMYTATWPREVRKIAADLLVN 375 (703)
Q Consensus 322 ~~IViDEaH~ml~~gf~~~i~~il~~l~-------~~~q~L~lSAT~p~~v~~l~~~~l~~ 375 (703)
+++|+||+|.|- .+....+.-.+...+ .+.-+|++|.+...++..++.++..+
T Consensus 180 slFIFDE~DKmp-~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~ 239 (344)
T KOG2170|consen 180 SLFIFDEVDKLP-PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARN 239 (344)
T ss_pred ceEEechhhhcC-HhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHc
Confidence 579999999873 223333333344322 13347899999888888777776543
No 483
>PRK08760 replicative DNA helicase; Provisional
Probab=85.66 E-value=4.9 Score=45.79 Aligned_cols=110 Identities=18% Similarity=0.102 Sum_probs=52.3
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh-
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK- 291 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~- 291 (703)
=+||.|.+|.|||..++-.+...... .+..|+|++. ..-..|+...+......... ..+..+......+.
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~------~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~--~~i~~g~l~~~e~~~ 301 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIK------SKKGVAVFSM-EMSASQLAMRLISSNGRINA--QRLRTGALEDEDWAR 301 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHh------cCCceEEEec-cCCHHHHHHHHHHhhCCCcH--HHHhcCCCCHHHHHH
Confidence 35667999999996544333222222 1336777754 23334555554433222211 11111221222222
Q ss_pred ------hhcCCCcEEEE-----CHHHHHHHHHhccccccCcccEEEecccccc
Q 005313 292 ------DIDRGVDIVVA-----TPGRLNDILEMRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 292 ------~l~~g~dIlV~-----Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml 333 (703)
.+. ...+.|. |++.+...+..-.. ...+++||||=.+.|.
T Consensus 302 ~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 302 VTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 122 2345543 45555444432211 2357899999998764
No 484
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.56 E-value=4.1 Score=47.93 Aligned_cols=27 Identities=4% Similarity=0.165 Sum_probs=17.8
Q ss_pred cCcccEEEecccccccCCChHHHHHHHH
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVK 346 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~ 346 (703)
.+..+|+|||++.+... ....+..++.
T Consensus 194 ~~~~IILIDEiPn~~~r-~~~~lq~lLr 220 (637)
T TIGR00602 194 TDKKIILVEDLPNQFYR-DTRALHEILR 220 (637)
T ss_pred CceeEEEeecchhhchh-hHHHHHHHHH
Confidence 45679999999776543 3344555555
No 485
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=85.34 E-value=3.5 Score=47.26 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=29.5
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHH
Q 005313 171 PPFMSFDATGFPPELLREVHNAG--FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 171 ~p~~sf~~~~l~~~l~~~l~~~g--~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ 228 (703)
.+-.+|++..-.+++.+.+...- +..+..++... ..-.+.+|+.+|+|+|||+.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 34567777765555555443210 11121121110 111257999999999999643
No 486
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.30 E-value=2.7 Score=45.23 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=29.0
Q ss_pred CCCCCcCCC-CCHHHHHHHHH---CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATG-FPPELLREVHN---AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~-l~~~l~~~l~~---~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ 228 (703)
|-.+|++.| |.+++. .++. ...++|--+++--| ---+-||+.+|+|+|||+.+
T Consensus 146 PdvtY~dIGGL~~Qi~-EirE~VELPL~~PElF~~~GI---~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 146 PDVTYEDIGGLDEQIQ-EIREVVELPLKNPELFEELGI---DPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCChhhccCHHHHHH-HHHHHhcccccCHHHHHHcCC---CCCCceEeeCCCCCcHHHHH
Confidence 456777764 444443 3322 23333333332222 11268999999999999643
No 487
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=85.20 E-value=0.58 Score=54.59 Aligned_cols=50 Identities=26% Similarity=0.374 Sum_probs=41.0
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
.+++++||||||||..+++|.+.... ..+||+=|--||........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~---------~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE---------DSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC---------CCEEEEeCcHHHHHHHHHHHHHCC
Confidence 57899999999999999999776532 268999999999988877776653
No 488
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=85.19 E-value=1.2 Score=54.36 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=33.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCC-CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAGFS-SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~-~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ 228 (703)
....|++.+....++..|+++-+. -+||-+-+-+ .+.--+.+|..+|.|+|||+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 346788888777777777765321 1222111111 1111356999999999999753
No 489
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.09 E-value=3 Score=50.24 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=14.8
Q ss_pred CCCEEEEecCCChHHHH
Q 005313 211 SRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 211 grdvlv~ApTGsGKTla 227 (703)
.+.+++.+|+|+|||+.
T Consensus 212 ~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CceEEEECCCCCChHHH
Confidence 46799999999999964
No 490
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=85.02 E-value=4.2 Score=41.93 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=16.9
Q ss_pred HHHHcCC-CEEEEecCCChHHHHHH
Q 005313 206 PIALQSR-DIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 206 ~~il~gr-dvlv~ApTGsGKTla~l 229 (703)
..+..++ -+.++++.|||||+..=
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH
Confidence 3444555 56778999999997544
No 491
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=84.93 E-value=1.9 Score=49.66 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=29.3
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
+.+-+++|+||+---+|..-+..+.+.+..+.+++-+|+.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 56678899999988888777777777777665555445443
No 492
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=84.87 E-value=4.4 Score=40.99 Aligned_cols=45 Identities=22% Similarity=0.122 Sum_probs=27.6
Q ss_pred HHHHHHc-----CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 204 SWPIALQ-----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 204 ai~~il~-----grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
.++.++. +.-+++.+++|+|||..++-.+...+.. +.+++++.--
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-------~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-------GKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEECC
Confidence 3455554 3457888999999997655444443322 3467776543
No 493
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=84.74 E-value=4.4 Score=42.56 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=13.6
Q ss_pred CCEEEEecCCChHHH
Q 005313 212 RDIVAIAKTGSGKTL 226 (703)
Q Consensus 212 rdvlv~ApTGsGKTl 226 (703)
+++++.+++|+|||.
T Consensus 112 ~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 112 LNTLIISPPQCGKTT 126 (270)
T ss_pred eEEEEEcCCCCCHHH
Confidence 578999999999996
No 494
>PRK07413 hypothetical protein; Validated
Probab=84.72 E-value=14 Score=40.50 Aligned_cols=55 Identities=25% Similarity=0.386 Sum_probs=42.9
Q ss_pred ccccCcccEEEecccccccCCCh--HHHHHHHHHcCCCceEEEEeccCcHHHHHHHH
Q 005313 316 ISLNQVSYLVLDEADRMLDMGFE--PQIRKIVKEVPARRQTLMYTATWPREVRKIAA 370 (703)
Q Consensus 316 ~~l~~~~~IViDEaH~ml~~gf~--~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~ 370 (703)
+.-..+++|||||+-..++.++. ..+..+++..|+..-+|++--.+|+++.+++.
T Consensus 121 i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~AD 177 (382)
T PRK07413 121 IASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIAD 177 (382)
T ss_pred HhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCC
Confidence 33467899999999988887754 56777788888888888888888888877654
No 495
>PHA00350 putative assembly protein
Probab=84.70 E-value=6.7 Score=43.39 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=13.7
Q ss_pred EEEEecCCChHHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 214 vlv~ApTGsGKTla~ll 230 (703)
.++.+..|||||+.++-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 46779999999987664
No 496
>PRK08006 replicative DNA helicase; Provisional
Probab=84.61 E-value=7.3 Score=44.32 Aligned_cols=112 Identities=17% Similarity=0.063 Sum_probs=51.9
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhh
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 292 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~ 292 (703)
=+||.|.+|.|||.-++-.+...... .+..|+|++.- .=..|+.+.+-... .++....+..+.-....|..
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~------~g~~V~~fSlE-M~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~e~~~ 296 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAML------QDKPVLIFSLE-MPGEQIMMRMLASL--SRVDQTRIRTGQLDDEDWAR 296 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHHHHH
Confidence 35666899999996444333332222 13467777642 23334443333221 12221112212212222222
Q ss_pred -------hcCCCcEEEE-----CHHHHHHHHHhccccccCcccEEEecccccc
Q 005313 293 -------IDRGVDIVVA-----TPGRLNDILEMRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 293 -------l~~g~dIlV~-----Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml 333 (703)
+.....+.|- |+..+...+..-......+++||||=.|.|.
T Consensus 297 ~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 297 ISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 2122445553 4555544443211122358899999999764
No 497
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.43 E-value=1.6 Score=49.10 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHHcCCC--EEEEecCCChHHHHHHHHHHHHHhh
Q 005313 197 PTPIQAQSWPIALQSRD--IVAIAKTGSGKTLGYLLPGFIHLKR 238 (703)
Q Consensus 197 p~piQ~~ai~~il~grd--vlv~ApTGsGKTla~llp~l~~l~~ 238 (703)
+.+.|.+.+..+++... +|+.+|||||||.+ |..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 37888888888887754 45569999999965 5566666554
No 498
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=84.38 E-value=7 Score=39.08 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=31.5
Q ss_pred ccCcccEEEecccccccCCChH-HHHHHHHHcCC--CceEEEEecc
Q 005313 318 LNQVSYLVLDEADRMLDMGFEP-QIRKIVKEVPA--RRQTLMYTAT 360 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~-~i~~il~~l~~--~~q~L~lSAT 360 (703)
..+.+++++||.-.-+|..... .+..++..+.. ..++|+.|-.
T Consensus 137 ~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 137 GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 3567899999999988877667 77788777654 4556665543
No 499
>PRK08840 replicative DNA helicase; Provisional
Probab=84.38 E-value=6.2 Score=44.77 Aligned_cols=157 Identities=14% Similarity=0.057 Sum_probs=0.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
|+.+-++---..+.-+..+.=+|+.|.||.|||.-++-.+...... ...-+++.-...=..|+...+ +...
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~-------~~~~v~~fSlEMs~~ql~~Rl--la~~ 269 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD-------QDKPVLIFSLEMPAEQLMMRM--LASL 269 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh-------CCCeEEEEeccCCHHHHHHHH--HHhh
Q ss_pred CCceEEEeeCCCCCCchhhhhc-------CCCcEEEE-----CHHHHHHHHHhccccccCcccEEEecccccc----cCC
Q 005313 273 SRISCTCLYGGAPKGPQLKDID-------RGVDIVVA-----TPGRLNDILEMRRISLNQVSYLVLDEADRML----DMG 336 (703)
Q Consensus 273 ~~i~v~~~~gg~~~~~~~~~l~-------~g~dIlV~-----Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml----~~g 336 (703)
.++....+..+.-....+..+. ....+.|. |...+...+..-......+++||||=.|.|. ...
T Consensus 270 s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~ 349 (464)
T PRK08840 270 SRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDN 349 (464)
T ss_pred CCCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCc
Q ss_pred ChHHHHHHHHHcCC-----CceEEEEe
Q 005313 337 FEPQIRKIVKEVPA-----RRQTLMYT 358 (703)
Q Consensus 337 f~~~i~~il~~l~~-----~~q~L~lS 358 (703)
....+..|...|+. ++.+|++|
T Consensus 350 r~~ei~~isr~LK~lAkel~ipVi~Ls 376 (464)
T PRK08840 350 RTLEIAEISRSLKALAKELNVPVVALS 376 (464)
T ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEEE
No 500
>PRK10263 DNA translocase FtsK; Provisional
Probab=84.32 E-value=5.9 Score=49.60 Aligned_cols=148 Identities=11% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCC
Q 005313 208 ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG 287 (703)
Q Consensus 208 il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~ 287 (703)
+.+.-++||.+.||+|||.+.-..++..+.+.....- ++++|=|-.. ++..+.....+
T Consensus 1007 Lak~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeV---rl~LIDPK~v-------ELs~ye~LPHl------------ 1064 (1355)
T PRK10263 1007 LAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDV---RFIMIDPKML-------ELSVYEGIPHL------------ 1064 (1355)
T ss_pred cccCCcEEEecCCCCCHHHHHHHHHHHHHHhCCccce---EEEEECCCcc-------chhhhccCccc------------
Q ss_pred chhhhhcCCCcEEEECHHHHHHHHH-------hccccccCcc--------------------------------------
Q 005313 288 PQLKDIDRGVDIVVATPGRLNDILE-------MRRISLNQVS-------------------------------------- 322 (703)
Q Consensus 288 ~~~~~l~~g~dIlV~Tp~~L~~~l~-------~~~~~l~~~~-------------------------------------- 322 (703)
..-+++.++...+.|. .+...+....
T Consensus 1065 ---------~~~VvtD~eka~~aLr~lV~EMeRRy~Lla~~GVrnI~~YN~k~~e~~r~grp~pd~~~~~g~s~~~~~p~ 1135 (1355)
T PRK10263 1065 ---------LTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPV 1135 (1355)
T ss_pred ---------cceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhcccccccccccccccccccccc
Q ss_pred -------cEEEecccccccCCChHHHHHHHHHc-----CCCceEEEEeccCc-HHHHHHHHHhhcCceecccccchhh
Q 005313 323 -------YLVLDEADRMLDMGFEPQIRKIVKEV-----PARRQTLMYTATWP-REVRKIAADLLVNPVQVNIGNVDEL 387 (703)
Q Consensus 323 -------~IViDEaH~ml~~gf~~~i~~il~~l-----~~~~q~L~lSAT~p-~~v~~l~~~~l~~~~~i~i~~~~~~ 387 (703)
+|||||++.|... ....+..++..| .-.+.+|+.|-.+. +-+...++..+...+.+.+.+..+.
T Consensus 1136 l~~LP~IVVIIDE~AdLm~~-~~kevE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DS 1212 (1355)
T PRK10263 1136 LKKEPYIVVLVDEFADLMMT-VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDS 1212 (1355)
T ss_pred ccCCCeEEEEEcChHHHHhh-hhHHHHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHH
Done!