Query 005313
Match_columns 703
No_of_seqs 464 out of 2683
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 21:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.1E-62 3.8E-67 548.5 46.1 390 158-551 40-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2.5E-58 8.4E-63 508.4 44.9 391 161-553 2-411 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 3.6E-55 1.2E-59 482.6 37.6 376 163-545 26-403 (410)
4 1s2m_A Putative ATP-dependent 100.0 3.6E-53 1.2E-57 464.8 39.2 370 171-548 18-388 (400)
5 3eiq_A Eukaryotic initiation f 100.0 7.8E-54 2.7E-58 471.6 32.3 375 170-551 36-413 (414)
6 1xti_A Probable ATP-dependent 100.0 5.3E-52 1.8E-56 453.5 37.9 367 174-546 8-379 (391)
7 3sqw_A ATP-dependent RNA helic 100.0 3.9E-52 1.3E-56 480.0 38.0 355 181-535 28-408 (579)
8 3i5x_A ATP-dependent RNA helic 100.0 2.1E-52 7.1E-57 480.3 35.2 357 181-537 79-461 (563)
9 1hv8_A Putative ATP-dependent 100.0 2.8E-51 9.5E-56 442.9 40.7 357 173-543 5-363 (367)
10 3fht_A ATP-dependent RNA helic 100.0 1.4E-50 4.8E-55 445.0 42.2 366 170-545 21-400 (412)
11 3pey_A ATP-dependent RNA helic 100.0 1.8E-50 6E-55 441.0 42.2 355 172-537 3-369 (395)
12 1fuu_A Yeast initiation factor 100.0 1.1E-52 3.6E-57 459.2 21.5 374 169-550 16-391 (394)
13 2z0m_A 337AA long hypothetical 100.0 2.1E-49 7.2E-54 423.4 39.1 335 181-538 1-335 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 5.3E-51 1.8E-55 459.6 22.0 372 160-541 75-463 (479)
15 2v1x_A ATP-dependent DNA helic 100.0 3.2E-47 1.1E-51 437.9 34.0 339 177-532 24-381 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 2E-46 6.8E-51 426.5 34.4 341 173-535 1-353 (523)
17 3fho_A ATP-dependent RNA helic 100.0 4.1E-48 1.4E-52 439.4 19.1 366 170-546 115-492 (508)
18 3oiy_A Reverse gyrase helicase 100.0 1.2E-46 3.9E-51 416.1 26.1 325 184-538 9-376 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 7E-45 2.4E-49 415.5 30.7 331 193-527 4-510 (556)
20 3tbk_A RIG-I helicase domain; 100.0 4.4E-44 1.5E-48 408.2 28.9 332 195-530 3-512 (555)
21 2va8_A SSO2462, SKI2-type heli 100.0 1.2E-42 4.1E-47 410.4 37.1 338 173-526 7-409 (715)
22 2zj8_A DNA helicase, putative 100.0 4.4E-43 1.5E-47 414.3 33.1 336 175-526 2-388 (720)
23 2ykg_A Probable ATP-dependent 100.0 4.9E-43 1.7E-47 412.2 30.9 339 186-528 3-519 (696)
24 2p6r_A Afuhel308 helicase; pro 100.0 4.4E-43 1.5E-47 413.3 29.6 336 175-526 2-389 (702)
25 4a2q_A RIG-I, retinoic acid in 100.0 6.7E-43 2.3E-47 417.1 31.0 333 191-527 243-751 (797)
26 3l9o_A ATP-dependent RNA helic 100.0 1.2E-42 4E-47 424.0 29.9 328 175-525 163-597 (1108)
27 1wp9_A ATP-dependent RNA helic 100.0 4.8E-41 1.6E-45 374.6 35.8 323 196-527 9-477 (494)
28 1tf5_A Preprotein translocase 100.0 1.7E-42 5.9E-47 400.7 23.4 323 191-527 79-547 (844)
29 4ddu_A Reverse gyrase; topoiso 100.0 8.8E-42 3E-46 416.2 29.3 319 192-538 75-503 (1104)
30 4a2w_A RIG-I, retinoic acid in 100.0 1.2E-41 4E-46 411.5 29.1 333 190-526 242-750 (936)
31 2xgj_A ATP-dependent RNA helic 100.0 1.3E-40 4.6E-45 402.7 37.0 310 192-525 83-499 (1010)
32 1gku_B Reverse gyrase, TOP-RG; 100.0 8.9E-42 3E-46 416.1 23.4 324 187-539 48-468 (1054)
33 4gl2_A Interferon-induced heli 100.0 1.2E-40 4E-45 392.2 31.8 325 195-524 6-517 (699)
34 1gm5_A RECG; helicase, replica 100.0 1.2E-40 4.1E-45 391.7 23.7 346 184-555 357-726 (780)
35 2fsf_A Preprotein translocase 100.0 2.1E-40 7E-45 382.4 22.5 318 195-527 73-585 (853)
36 2eyq_A TRCF, transcription-rep 100.0 6.4E-39 2.2E-43 393.2 36.7 321 180-525 587-922 (1151)
37 4a4z_A Antiviral helicase SKI2 100.0 6.3E-39 2.1E-43 388.0 34.0 308 196-522 39-489 (997)
38 1nkt_A Preprotein translocase 100.0 1.9E-39 6.6E-44 374.5 25.3 322 192-527 108-619 (922)
39 4f92_B U5 small nuclear ribonu 100.0 4.8E-38 1.7E-42 395.9 34.8 341 181-534 911-1317(1724)
40 4f92_B U5 small nuclear ribonu 100.0 1.5E-38 5.3E-43 400.4 29.3 345 181-533 66-481 (1724)
41 2oca_A DAR protein, ATP-depend 100.0 7.3E-39 2.5E-43 363.3 23.0 312 195-523 112-453 (510)
42 2fwr_A DNA repair protein RAD2 100.0 1.2E-38 3.9E-43 358.2 19.5 291 195-521 92-448 (472)
43 2whx_A Serine protease/ntpase/ 100.0 2.6E-39 8.9E-44 373.5 13.2 313 180-538 156-494 (618)
44 3fe2_A Probable ATP-dependent 100.0 1.5E-37 5.2E-42 318.5 24.1 234 150-383 5-239 (242)
45 2jlq_A Serine protease subunit 100.0 2.6E-37 8.8E-42 345.5 18.9 286 193-524 1-310 (451)
46 1yks_A Genome polyprotein [con 100.0 2.7E-38 9.1E-43 352.2 6.1 293 207-544 4-321 (440)
47 2xau_A PRE-mRNA-splicing facto 100.0 9.9E-37 3.4E-41 360.3 19.8 336 170-526 68-444 (773)
48 2wv9_A Flavivirin protease NS2 100.0 4.5E-37 1.6E-41 357.1 13.4 295 196-535 215-546 (673)
49 3h1t_A Type I site-specific re 100.0 8E-36 2.7E-40 344.5 23.4 315 195-525 177-558 (590)
50 3o8b_A HCV NS3 protease/helica 100.0 4.5E-37 1.6E-41 352.7 11.5 278 196-529 217-518 (666)
51 3iuy_A Probable ATP-dependent 100.0 9.6E-35 3.3E-39 294.5 22.6 214 166-380 11-227 (228)
52 1z63_A Helicase of the SNF2/RA 100.0 7.5E-34 2.6E-38 321.3 30.9 326 195-540 36-466 (500)
53 1wrb_A DJVLGB; RNA helicase, D 100.0 7.9E-35 2.7E-39 300.0 20.4 226 159-384 6-242 (253)
54 2z83_A Helicase/nucleoside tri 100.0 1.6E-35 5.4E-40 331.7 13.9 272 205-525 15-313 (459)
55 3dkp_A Probable ATP-dependent 100.0 1.9E-34 6.5E-39 295.6 20.3 229 152-383 3-242 (245)
56 2v6i_A RNA helicase; membrane, 100.0 1.4E-34 5E-39 321.4 20.9 268 210-522 1-288 (431)
57 3dmq_A RNA polymerase-associat 100.0 2.4E-34 8.3E-39 348.2 24.5 334 195-538 152-626 (968)
58 3ber_A Probable ATP-dependent 100.0 1.1E-33 3.9E-38 291.2 23.5 206 172-381 41-247 (249)
59 3bor_A Human initiation factor 100.0 1.1E-33 3.6E-38 289.1 22.4 212 167-382 23-235 (237)
60 2oxc_A Probable ATP-dependent 100.0 1.9E-33 6.3E-38 285.8 22.5 212 165-381 15-228 (230)
61 2pl3_A Probable ATP-dependent 100.0 3.2E-33 1.1E-37 284.8 24.0 212 170-382 21-233 (236)
62 1vec_A ATP-dependent RNA helic 100.0 4.6E-33 1.6E-37 277.2 24.0 202 174-379 3-205 (206)
63 1q0u_A Bstdead; DEAD protein, 100.0 1.3E-33 4.5E-38 284.5 20.1 207 172-382 2-212 (219)
64 1qde_A EIF4A, translation init 100.0 7.2E-33 2.5E-37 279.6 23.6 211 167-382 7-217 (224)
65 3fmo_B ATP-dependent RNA helic 100.0 6E-33 2.1E-37 293.7 23.7 217 159-382 74-298 (300)
66 2gxq_A Heat resistant RNA depe 100.0 1.1E-32 3.8E-37 274.4 23.7 204 175-381 2-205 (207)
67 3ly5_A ATP-dependent RNA helic 100.0 7.5E-33 2.6E-37 287.3 21.4 203 174-376 52-257 (262)
68 3rc3_A ATP-dependent RNA helic 100.0 1.5E-32 5E-37 318.5 21.9 272 206-522 150-442 (677)
69 1z3i_X Similar to RAD54-like; 100.0 5.3E-31 1.8E-35 306.8 34.0 331 196-537 55-538 (644)
70 1t6n_A Probable ATP-dependent 100.0 3E-32 1E-36 274.5 20.1 206 171-380 11-219 (220)
71 3mwy_W Chromo domain-containin 100.0 5.2E-31 1.8E-35 314.1 28.8 335 195-541 235-698 (800)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.1E-29 3.8E-34 306.0 29.3 312 195-523 270-707 (1038)
73 3jux_A Protein translocase sub 100.0 5.8E-29 2E-33 281.7 30.3 317 195-527 74-589 (822)
74 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.4E-26 1.5E-30 223.9 18.7 167 388-554 15-182 (185)
75 2p6n_A ATP-dependent RNA helic 99.9 5.4E-26 1.9E-30 224.4 18.6 178 371-552 10-189 (191)
76 2ipc_A Preprotein translocase 99.9 9E-25 3.1E-29 251.6 31.2 130 192-333 76-215 (997)
77 1c4o_A DNA nucleotide excision 99.9 1.7E-25 5.8E-30 260.6 25.7 174 350-534 379-559 (664)
78 2d7d_A Uvrabc system protein B 99.9 8.9E-25 3E-29 254.4 24.6 174 350-534 385-565 (661)
79 2hjv_A ATP-dependent RNA helic 99.9 4.8E-24 1.6E-28 204.9 19.1 149 390-539 7-156 (163)
80 1t5i_A C_terminal domain of A 99.9 4.1E-24 1.4E-28 207.3 16.2 159 391-550 4-164 (172)
81 1fuk_A Eukaryotic initiation f 99.9 1.9E-24 6.5E-29 208.0 12.8 155 392-547 3-159 (165)
82 2rb4_A ATP-dependent RNA helic 99.9 1.7E-23 5.7E-28 203.4 18.3 150 391-541 6-163 (175)
83 3b6e_A Interferon-induced heli 99.9 1.4E-23 4.8E-28 209.4 14.4 166 193-360 30-216 (216)
84 3eaq_A Heat resistant RNA depe 99.9 9.4E-23 3.2E-27 204.6 18.1 145 394-539 7-152 (212)
85 2vl7_A XPD; helicase, unknown 99.9 2.7E-22 9.2E-27 228.8 19.1 102 418-524 383-520 (540)
86 3i32_A Heat resistant RNA depe 99.9 3E-22 1E-26 211.0 17.6 144 393-537 3-147 (300)
87 1rif_A DAR protein, DNA helica 99.9 1.1E-21 3.8E-26 205.2 14.3 155 195-365 112-266 (282)
88 2yjt_D ATP-dependent RNA helic 99.8 1.8E-23 6E-28 202.3 0.0 146 393-539 4-151 (170)
89 3crv_A XPD/RAD3 related DNA he 99.9 7E-20 2.4E-24 209.4 27.4 308 196-525 3-531 (551)
90 3llm_A ATP-dependent RNA helic 99.8 9.2E-21 3.2E-25 192.9 15.0 171 184-365 49-222 (235)
91 2fz4_A DNA repair protein RAD2 99.8 1.3E-18 4.6E-23 177.3 16.9 140 195-365 92-232 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 8.8E-18 3E-22 194.0 22.8 104 419-525 448-584 (620)
93 1z5z_A Helicase of the SNF2/RA 99.7 7.7E-18 2.6E-22 175.0 12.2 139 400-538 92-235 (271)
94 2e45_A Fe65 protein, amyloid b 98.9 8.6E-10 2.9E-14 82.4 3.4 37 18-56 15-51 (55)
95 1w36_D RECD, exodeoxyribonucle 98.8 1.1E-08 3.7E-13 118.0 12.9 146 198-360 151-298 (608)
96 2ysh_A GAS-7, growth-arrest-sp 98.7 5.1E-09 1.7E-13 75.2 3.7 37 18-55 3-39 (40)
97 2jv4_A Peptidyl-prolyl CIS/tra 98.6 2.3E-08 8E-13 76.3 3.8 36 20-55 5-40 (54)
98 2ho2_A Fe65 protein, amyloid b 98.6 2.1E-08 7.3E-13 70.5 2.6 34 21-56 2-35 (38)
99 2dmv_A Itchy homolog E3 ubiqui 98.5 4.3E-08 1.5E-12 71.4 3.8 37 18-55 3-39 (43)
100 2ysc_A Amyloid beta A4 precurs 98.5 7.8E-08 2.7E-12 68.1 3.1 34 19-54 5-38 (39)
101 1wr7_A NEDD4-2; all-beta, liga 98.4 9.8E-08 3.3E-12 68.8 2.7 36 18-54 4-39 (41)
102 2jx8_A Hpcif1, phosphorylated 98.4 3.6E-08 1.2E-12 74.7 0.1 38 19-56 7-44 (52)
103 1wr3_A Ubiquitin-protein ligas 98.4 1.4E-07 4.6E-12 66.0 2.8 33 21-54 3-35 (36)
104 3upu_A ATP-dependent DNA helic 98.4 1.2E-05 4E-10 89.5 19.6 137 192-358 21-162 (459)
105 1wr4_A Ubiquitin-protein ligas 98.3 2.5E-07 8.4E-12 64.7 2.7 34 20-54 2-35 (36)
106 1e0m_A Wwprototype; SH3 protot 98.3 2.8E-07 9.6E-12 64.9 3.0 34 21-55 2-35 (37)
107 2kyk_A E3 ubiquitin-protein li 98.3 3.2E-07 1.1E-11 65.4 3.3 34 21-55 5-38 (39)
108 1ymz_A CC45; artificial protei 98.3 3.1E-07 1.1E-11 66.9 2.9 35 20-55 6-40 (43)
109 2law_A Yorkie homolog; YAP, SM 98.2 4.1E-07 1.4E-11 64.3 2.7 36 18-54 2-37 (38)
110 2ysf_A E3 ubiquitin-protein li 98.2 5.8E-07 2E-11 64.3 3.4 38 17-55 2-39 (40)
111 2ysg_A Syntaxin-binding protei 98.2 6.1E-07 2.1E-11 64.2 3.3 37 18-55 3-39 (40)
112 2ez5_W Dnedd4, E3 ubiquitin-pr 98.2 8.2E-07 2.8E-11 65.5 3.9 42 14-56 2-43 (46)
113 2ysb_A Salvador homolog 1 prot 98.2 9.7E-07 3.3E-11 65.9 4.0 41 17-58 6-46 (49)
114 2zaj_A Membrane-associated gua 98.2 1E-06 3.6E-11 65.7 3.9 37 18-55 9-45 (49)
115 3e1s_A Exodeoxyribonuclease V, 98.1 4.9E-06 1.7E-10 95.0 10.3 123 196-360 189-315 (574)
116 3lfu_A DNA helicase II; SF1 he 98.1 7.3E-05 2.5E-09 86.4 20.4 71 195-270 8-78 (647)
117 2kpz_A E3 ubiquitin-protein li 98.1 8.9E-07 3.1E-11 66.3 2.7 38 18-56 8-45 (49)
118 1i5h_W Rnedd4, ubiquitin ligas 98.1 1.2E-06 4.2E-11 65.7 3.5 36 20-56 9-44 (50)
119 2gk6_A Regulator of nonsense t 98.1 1.9E-05 6.5E-10 91.2 14.3 70 194-269 178-247 (624)
120 2l4j_A YES-associated protein 98.1 1.9E-06 6.4E-11 63.5 3.6 38 17-55 6-43 (46)
121 2yse_A Membrane-associated gua 98.1 1.6E-06 5.6E-11 67.3 3.1 42 13-55 4-45 (60)
122 2djy_A SMAD ubiquitination reg 98.0 2.8E-06 9.5E-11 61.3 3.5 35 20-55 5-39 (42)
123 4b3f_X DNA-binding protein smu 98.0 8.5E-06 2.9E-10 94.5 9.7 67 196-269 189-256 (646)
124 2xzl_A ATP-dependent helicase 98.0 3.4E-05 1.2E-09 91.3 14.4 70 194-269 358-427 (802)
125 2jmf_A E3 ubiquitin-protein li 98.0 4.9E-06 1.7E-10 63.1 3.8 38 18-56 14-51 (53)
126 1e0n_A Hypothetical protein; Y 98.0 2.1E-06 7.3E-11 55.5 1.5 27 25-53 1-27 (27)
127 2dwv_A Salvador homolog 1 prot 97.9 4.8E-06 1.6E-10 62.1 2.8 36 19-55 10-45 (49)
128 2wjy_A Regulator of nonsense t 97.9 5.8E-05 2E-09 89.3 13.1 70 194-269 354-423 (800)
129 1ywi_A Formin-binding protein 97.9 4.2E-06 1.4E-10 60.1 1.6 32 22-54 9-40 (41)
130 3hgt_A HDA1 complex subunit 3; 97.8 0.00013 4.5E-09 76.3 13.3 121 401-526 106-238 (328)
131 2ysi_A Transcription elongatio 97.8 1.2E-05 4E-10 57.4 2.8 32 22-54 7-38 (40)
132 1wmv_A WWOX, WW domain contain 97.7 2.8E-05 9.7E-10 59.2 4.6 38 19-57 8-45 (54)
133 2ysd_A Membrane-associated gua 97.7 3.4E-05 1.2E-09 59.4 4.4 36 20-56 12-47 (57)
134 1e0l_A Formin binding protein; 97.7 2.2E-05 7.5E-10 55.0 2.7 31 23-54 4-34 (37)
135 1jmq_A YAP65, 65 kDa YES-assoc 97.6 3.8E-05 1.3E-09 56.6 3.5 38 17-55 3-40 (46)
136 2l5f_A PRE-mRNA-processing fac 97.6 2.3E-05 8E-10 66.9 2.7 36 20-56 9-44 (92)
137 3tc5_A Peptidyl-prolyl CIS-tra 97.5 3.1E-05 1.1E-09 73.6 2.4 38 19-56 6-43 (166)
138 2kxq_A E3 ubiquitin-protein li 97.4 9.3E-05 3.2E-09 62.9 3.4 40 16-56 3-42 (90)
139 2o0j_A Terminase, DNA packagin 97.2 0.0029 9.8E-08 68.2 14.1 71 196-271 163-233 (385)
140 2jxw_A WW domain-binding prote 97.2 0.00014 4.7E-09 59.6 2.6 34 20-54 41-74 (75)
141 1tk7_A CG4244-PB; WW domain, n 97.0 0.00026 8.8E-09 59.9 2.6 35 21-56 11-45 (88)
142 3vkw_A Replicase large subunit 97.0 0.0017 5.8E-08 71.0 9.5 106 214-360 164-269 (446)
143 2kxq_A E3 ubiquitin-protein li 96.9 0.00047 1.6E-08 58.5 3.3 34 21-55 54-87 (90)
144 3cpe_A Terminase, DNA packagin 96.9 0.0045 1.5E-07 70.8 12.5 143 196-358 163-311 (592)
145 3l4h_A E3 ubiquitin-protein li 96.9 0.0007 2.4E-08 58.7 4.2 40 16-56 66-105 (109)
146 2dk1_A WW domain-binding prote 96.9 0.00063 2.2E-08 50.7 3.4 30 26-56 8-37 (50)
147 2l5f_A PRE-mRNA-processing fac 96.9 0.00028 9.6E-09 60.1 1.5 32 23-55 53-84 (92)
148 3ec2_A DNA replication protein 96.8 0.0033 1.1E-07 59.8 9.2 45 320-364 100-146 (180)
149 1tk7_A CG4244-PB; WW domain, n 96.8 0.00049 1.7E-08 58.1 2.7 34 20-54 54-87 (88)
150 1pjr_A PCRA; DNA repair, DNA r 96.7 0.0054 1.8E-07 71.9 10.8 110 195-331 10-121 (724)
151 1o6w_A PRP40, PRE-mRNA process 96.6 0.00045 1.5E-08 56.5 0.9 33 22-55 40-72 (75)
152 1uaa_A REP helicase, protein ( 96.5 0.0033 1.1E-07 73.0 8.0 109 196-330 2-112 (673)
153 1xx6_A Thymidine kinase; NESG, 96.4 0.0054 1.8E-07 59.6 7.1 37 212-255 9-45 (191)
154 2orw_A Thymidine kinase; TMTK, 96.3 0.0052 1.8E-07 59.2 6.5 38 211-255 3-40 (184)
155 2b8t_A Thymidine kinase; deoxy 96.2 0.0072 2.5E-07 60.1 7.0 90 211-332 12-101 (223)
156 3te6_A Regulatory protein SIR3 96.2 0.032 1.1E-06 58.5 12.2 25 212-237 46-70 (318)
157 2kjq_A DNAA-related protein; s 96.0 0.0077 2.6E-07 55.9 5.7 44 319-363 82-127 (149)
158 2j9r_A Thymidine kinase; TK1, 96.0 0.0077 2.6E-07 59.3 6.0 37 213-256 30-66 (214)
159 2zpa_A Uncharacterized protein 96.0 0.012 4.1E-07 67.5 8.2 112 196-361 175-288 (671)
160 2jxw_A WW domain-binding prote 95.9 0.0043 1.5E-07 50.6 3.1 31 25-56 5-35 (75)
161 2v1u_A Cell division control p 95.5 0.042 1.4E-06 58.3 10.1 18 211-228 44-61 (387)
162 1g5t_A COB(I)alamin adenosyltr 95.5 0.15 5E-06 49.5 12.8 140 212-369 29-171 (196)
163 2p65_A Hypothetical protein PF 95.5 0.066 2.3E-06 50.1 10.2 19 211-229 43-61 (187)
164 2w58_A DNAI, primosome compone 95.4 0.084 2.9E-06 50.8 10.8 17 212-228 55-71 (202)
165 3e2i_A Thymidine kinase; Zn-bi 95.3 0.018 6.3E-07 56.6 5.5 39 211-256 28-66 (219)
166 3kl4_A SRP54, signal recogniti 95.3 0.057 2E-06 59.0 10.0 55 318-372 177-234 (433)
167 2dk7_A Transcription elongatio 95.2 0.0062 2.1E-07 48.5 1.6 30 25-55 20-49 (73)
168 2orv_A Thymidine kinase; TP4A 95.2 0.016 5.6E-07 57.6 4.9 39 211-256 19-57 (234)
169 1a5t_A Delta prime, HOLB; zinc 95.2 0.028 9.7E-07 59.2 7.2 34 197-230 3-43 (334)
170 1o6w_A PRP40, PRE-mRNA process 95.1 0.0073 2.5E-07 49.1 1.9 29 26-55 3-31 (75)
171 1yw5_A Peptidyl prolyl CIS/tra 95.1 0.012 4E-07 56.4 3.5 35 21-55 6-40 (177)
172 3syl_A Protein CBBX; photosynt 95.1 0.091 3.1E-06 54.1 10.6 18 212-229 68-85 (309)
173 1l8q_A Chromosomal replication 95.1 0.077 2.6E-06 55.3 10.1 18 212-229 38-55 (324)
174 1jbk_A CLPB protein; beta barr 95.0 0.43 1.5E-05 44.4 14.3 17 212-228 44-60 (195)
175 2chg_A Replication factor C sm 95.0 0.2 6.7E-06 48.0 12.1 41 319-360 101-141 (226)
176 2qby_B CDC6 homolog 3, cell di 95.0 0.087 3E-06 55.9 10.4 17 212-228 46-62 (384)
177 3u4q_A ATP-dependent helicase/ 94.9 0.034 1.1E-06 69.1 7.9 125 196-330 10-137 (1232)
178 1fnn_A CDC6P, cell division co 94.9 0.057 2E-06 57.4 8.7 16 213-228 46-61 (389)
179 3bos_A Putative DNA replicatio 94.7 0.04 1.4E-06 54.1 6.4 19 210-228 51-69 (242)
180 2qgz_A Helicase loader, putati 94.7 0.12 4E-06 53.9 10.2 19 211-229 152-170 (308)
181 1d2n_A N-ethylmaleimide-sensit 94.5 0.22 7.6E-06 50.3 11.6 18 212-229 65-82 (272)
182 3n70_A Transport activator; si 94.5 0.1 3.4E-06 47.7 8.1 21 208-228 21-41 (145)
183 1w4r_A Thymidine kinase; type 94.5 0.042 1.4E-06 53.2 5.6 38 211-255 20-57 (195)
184 3eie_A Vacuolar protein sortin 94.4 0.37 1.3E-05 50.2 13.3 52 172-229 13-69 (322)
185 2z4s_A Chromosomal replication 94.2 0.17 6E-06 55.3 10.5 44 320-363 194-239 (440)
186 3co5_A Putative two-component 94.1 0.086 2.9E-06 48.1 6.8 22 206-227 22-43 (143)
187 2qby_A CDC6 homolog 1, cell di 93.9 0.11 3.7E-06 54.9 8.1 18 211-228 45-62 (386)
188 3u61_B DNA polymerase accessor 93.7 0.24 8.2E-06 51.4 10.3 41 320-360 105-145 (324)
189 3h4m_A Proteasome-activating n 93.6 0.035 1.2E-06 56.7 3.5 53 173-228 13-68 (285)
190 1gm5_A RECG; helicase, replica 93.5 0.19 6.4E-06 59.1 9.8 85 409-493 407-497 (780)
191 1sxj_A Activator 1 95 kDa subu 93.4 0.13 4.5E-06 57.5 8.0 41 319-361 147-189 (516)
192 3dm5_A SRP54, signal recogniti 93.4 0.24 8.1E-06 54.2 9.7 54 319-372 181-235 (443)
193 3oiy_A Reverse gyrase helicase 93.3 0.24 8.2E-06 53.3 9.7 81 412-493 57-146 (414)
194 2w0m_A SSO2452; RECA, SSPF, un 93.2 0.77 2.6E-05 44.5 12.4 19 211-229 23-41 (235)
195 2dr3_A UPF0273 protein PH0284; 93.2 0.39 1.3E-05 47.2 10.2 52 210-269 22-73 (247)
196 3vfd_A Spastin; ATPase, microt 92.8 0.74 2.5E-05 49.2 12.6 18 211-228 148-165 (389)
197 1njg_A DNA polymerase III subu 92.8 0.68 2.3E-05 44.7 11.3 16 213-228 47-62 (250)
198 1iqp_A RFCS; clamp loader, ext 92.6 0.46 1.6E-05 48.9 10.3 40 319-359 109-148 (327)
199 2qp9_X Vacuolar protein sortin 92.3 0.46 1.6E-05 50.3 10.0 18 212-229 85-102 (355)
200 3cf0_A Transitional endoplasmi 92.3 0.5 1.7E-05 48.7 9.9 54 172-228 10-66 (301)
201 3olm_A E3 ubiquitin-protein li 92.2 0.089 3E-06 57.4 4.3 35 21-56 7-41 (429)
202 1w5s_A Origin recognition comp 92.2 0.28 9.6E-06 52.4 8.2 17 212-228 51-69 (412)
203 1sxj_E Activator 1 40 kDa subu 91.9 0.35 1.2E-05 50.7 8.5 42 319-361 133-174 (354)
204 3pfi_A Holliday junction ATP-d 91.9 0.35 1.2E-05 50.4 8.4 17 212-228 56-72 (338)
205 1sxj_D Activator 1 41 kDa subu 91.8 0.5 1.7E-05 49.3 9.4 40 319-359 132-171 (353)
206 2fna_A Conserved hypothetical 91.6 3.8 0.00013 42.2 16.1 51 304-358 124-177 (357)
207 1xwi_A SKD1 protein; VPS4B, AA 91.6 1.2 4.2E-05 46.3 12.1 47 172-228 7-62 (322)
208 2gno_A DNA polymerase III, gam 91.3 0.73 2.5E-05 47.7 9.9 39 319-358 81-119 (305)
209 1jr3_A DNA polymerase III subu 91.2 0.67 2.3E-05 48.7 9.7 39 319-358 118-156 (373)
210 3pvs_A Replication-associated 90.7 0.32 1.1E-05 53.4 6.7 17 212-228 51-67 (447)
211 3uk6_A RUVB-like 2; hexameric 90.6 1.2 4.1E-05 46.8 11.1 18 212-229 71-88 (368)
212 1sxj_B Activator 1 37 kDa subu 90.6 0.54 1.8E-05 48.2 8.1 39 320-359 107-145 (323)
213 4b4t_J 26S protease regulatory 90.3 1.4 4.7E-05 47.5 11.0 54 172-228 143-199 (405)
214 1eg3_A Dystrophin; EF-hand lik 90.1 0.096 3.3E-06 53.1 1.7 33 22-55 11-43 (261)
215 2bjv_A PSP operon transcriptio 90.1 0.64 2.2E-05 46.6 8.0 20 209-228 27-46 (265)
216 2r6a_A DNAB helicase, replicat 89.9 0.76 2.6E-05 50.3 9.0 45 204-254 192-240 (454)
217 2zr9_A Protein RECA, recombina 89.8 0.4 1.4E-05 50.7 6.4 37 211-254 61-97 (349)
218 3d8b_A Fidgetin-like protein 1 89.8 0.4 1.4E-05 50.8 6.4 18 211-228 117-134 (357)
219 1ls1_A Signal recognition part 89.7 3.6 0.00012 42.2 13.4 48 319-366 179-227 (295)
220 2eyq_A TRCF, transcription-rep 89.7 1.3 4.3E-05 54.5 11.6 81 412-492 645-731 (1151)
221 3cmu_A Protein RECA, recombina 89.6 0.43 1.5E-05 61.1 7.4 44 205-255 1415-1464(2050)
222 2qz4_A Paraplegin; AAA+, SPG7, 89.5 1.1 3.6E-05 44.6 9.0 18 211-228 39-56 (262)
223 1sxj_C Activator 1 40 kDa subu 89.5 1 3.6E-05 47.0 9.3 39 319-358 109-147 (340)
224 4ddu_A Reverse gyrase; topoiso 89.4 0.65 2.2E-05 56.7 8.6 81 413-494 115-204 (1104)
225 2q6t_A DNAB replication FORK h 89.3 0.84 2.9E-05 49.8 8.7 45 204-254 189-237 (444)
226 1ub1_A MECP2, attachment regio 89.2 0.27 9.3E-06 43.9 3.7 45 3-47 10-69 (133)
227 4a1f_A DNAB helicase, replicat 89.0 0.35 1.2E-05 51.0 5.1 36 212-254 47-82 (338)
228 2zan_A Vacuolar protein sortin 89.0 0.9 3.1E-05 49.6 8.7 54 172-228 129-184 (444)
229 3lda_A DNA repair protein RAD5 88.6 1.7 5.9E-05 46.7 10.3 27 169-195 79-105 (400)
230 3b9p_A CG5977-PA, isoform A; A 88.4 2.7 9.3E-05 42.6 11.4 18 211-228 54-71 (297)
231 1hqc_A RUVB; extended AAA-ATPa 88.2 0.57 1.9E-05 48.3 6.1 17 212-228 39-55 (324)
232 3hu3_A Transitional endoplasmi 88.1 0.51 1.7E-05 52.4 5.9 41 321-361 298-348 (489)
233 1cr0_A DNA primase/helicase; R 87.9 0.51 1.7E-05 48.3 5.5 20 210-229 34-53 (296)
234 3hr8_A Protein RECA; alpha and 87.9 0.87 3E-05 48.3 7.3 45 204-255 48-98 (356)
235 1xp8_A RECA protein, recombina 87.7 1 3.4E-05 48.0 7.7 37 212-255 75-111 (366)
236 2px0_A Flagellar biosynthesis 87.5 2.9 0.0001 42.9 10.9 42 319-362 181-225 (296)
237 1n0w_A DNA repair protein RAD5 87.5 1.3 4.4E-05 43.3 8.0 20 211-230 24-43 (243)
238 2ehv_A Hypothetical protein PH 87.4 0.52 1.8E-05 46.5 5.0 46 318-363 133-183 (251)
239 4b4t_H 26S protease regulatory 87.3 0.47 1.6E-05 51.9 4.9 54 172-228 204-260 (467)
240 4b4t_M 26S protease regulatory 87.1 0.99 3.4E-05 49.1 7.3 55 171-228 175-232 (434)
241 1qvr_A CLPB protein; coiled co 87.0 1.4 4.8E-05 52.4 9.3 18 212-229 192-209 (854)
242 1t6n_A Probable ATP-dependent 86.8 1.8 6.3E-05 41.7 8.6 72 419-493 82-165 (220)
243 4b4t_I 26S protease regulatory 86.2 2 6.8E-05 46.6 9.0 54 172-228 177-233 (437)
244 3bh0_A DNAB-like replicative h 86.2 1.9 6.6E-05 44.6 8.8 49 211-267 68-116 (315)
245 4b4t_L 26S protease subunit RP 85.9 0.38 1.3E-05 52.5 3.2 54 172-228 176-232 (437)
246 2chq_A Replication factor C sm 85.7 0.73 2.5E-05 47.1 5.2 16 213-228 40-55 (319)
247 1nlf_A Regulatory protein REPA 85.7 3 0.0001 42.1 9.8 23 208-230 27-49 (279)
248 2iut_A DNA translocase FTSK; n 85.5 1.3 4.4E-05 49.8 7.4 25 212-236 215-239 (574)
249 2pk2_A Cyclin-T1, protein TAT; 85.5 0.57 1.9E-05 49.8 4.3 25 529-553 233-257 (358)
250 3hjh_A Transcription-repair-co 85.2 2.6 8.9E-05 46.5 9.6 52 211-272 14-65 (483)
251 2z43_A DNA repair and recombin 85.0 1.3 4.3E-05 46.2 6.7 66 203-269 94-165 (324)
252 2cvh_A DNA repair and recombin 84.9 2.6 8.9E-05 40.3 8.5 20 211-230 20-39 (220)
253 3t15_A Ribulose bisphosphate c 84.8 1 3.4E-05 46.2 5.7 17 212-228 37-53 (293)
254 3bgw_A DNAB-like replicative h 84.8 1.7 5.7E-05 47.5 7.8 44 204-254 186-233 (444)
255 2qen_A Walker-type ATPase; unk 84.1 4.2 0.00015 41.7 10.3 18 210-227 30-47 (350)
256 4b4t_K 26S protease regulatory 83.8 10 0.00035 41.1 13.3 54 172-228 167-223 (428)
257 1vma_A Cell division protein F 83.7 4.8 0.00016 41.5 10.3 16 214-229 107-122 (306)
258 1u94_A RECA protein, recombina 83.4 1.1 3.7E-05 47.6 5.3 37 211-254 63-99 (356)
259 3cf2_A TER ATPase, transitiona 82.4 1.7 5.7E-05 51.1 6.8 16 212-227 239-254 (806)
260 3fe2_A Probable ATP-dependent 81.8 5.3 0.00018 39.1 9.5 71 418-492 101-182 (242)
261 3k1j_A LON protease, ATP-depen 81.1 5.3 0.00018 45.3 10.3 24 205-228 54-77 (604)
262 2p6n_A ATP-dependent RNA helic 80.9 3.7 0.00013 39.1 7.7 72 247-328 55-130 (191)
263 2ce7_A Cell division protein F 80.7 3.5 0.00012 45.4 8.3 17 212-228 50-66 (476)
264 2j37_W Signal recognition part 80.6 8.1 0.00028 42.8 11.3 51 319-369 182-233 (504)
265 3cmu_A Protein RECA, recombina 80.5 3.7 0.00013 52.7 9.4 121 210-361 1080-1217(2050)
266 3ber_A Probable ATP-dependent 80.5 8.7 0.0003 37.9 10.6 72 417-492 109-192 (249)
267 3u4q_B ATP-dependent helicase/ 80.4 4 0.00014 50.2 9.6 87 215-330 5-91 (1166)
268 2ffh_A Protein (FFH); SRP54, s 80.2 13 0.00046 40.0 12.6 52 319-370 179-231 (425)
269 1r6b_X CLPA protein; AAA+, N-t 80.2 8.7 0.0003 44.7 12.0 19 211-229 207-225 (758)
270 2hjv_A ATP-dependent RNA helic 79.9 4.7 0.00016 37.0 7.8 73 247-329 36-112 (163)
271 2oxc_A Probable ATP-dependent 79.2 4 0.00014 39.6 7.5 70 418-492 91-172 (230)
272 2zts_A Putative uncharacterize 79.2 1.6 5.5E-05 42.7 4.6 51 211-268 30-80 (251)
273 1v5w_A DMC1, meiotic recombina 78.5 2.8 9.7E-05 43.9 6.5 65 204-269 110-180 (343)
274 1j8m_F SRP54, signal recogniti 78.1 15 0.0005 37.6 11.6 44 319-362 179-225 (297)
275 3cf2_A TER ATPase, transitiona 77.9 1.3 4.6E-05 51.9 4.0 54 172-228 472-528 (806)
276 2jgn_A DBX, DDX3, ATP-dependen 77.9 4.1 0.00014 38.5 6.8 71 246-326 46-120 (185)
277 3e70_C DPA, signal recognition 77.6 14 0.00048 38.4 11.4 53 320-372 211-264 (328)
278 3pxi_A Negative regulator of g 77.6 8.3 0.00028 44.9 10.8 17 213-229 523-539 (758)
279 1xti_A Probable ATP-dependent 77.1 8 0.00028 40.3 9.6 71 419-492 76-158 (391)
280 3m6a_A ATP-dependent protease 76.7 2.2 7.6E-05 47.8 5.3 18 211-228 108-125 (543)
281 3bor_A Human initiation factor 76.7 8.9 0.0003 37.4 9.2 72 418-492 97-179 (237)
282 2gxq_A Heat resistant RNA depe 76.3 9.4 0.00032 35.9 9.1 72 418-493 71-151 (207)
283 1t5i_A C_terminal domain of A 76.2 10 0.00035 35.0 9.1 73 247-329 32-108 (172)
284 1oyw_A RECQ helicase, ATP-depe 76.1 12 0.00041 41.5 11.1 58 419-476 65-123 (523)
285 3iuy_A Probable ATP-dependent 76.1 8.4 0.00029 37.1 8.8 71 418-492 93-173 (228)
286 1vec_A ATP-dependent RNA helic 75.8 8.2 0.00028 36.4 8.5 71 418-492 70-152 (206)
287 2l8b_A Protein TRAI, DNA helic 75.5 2.5 8.7E-05 40.2 4.4 58 198-261 36-95 (189)
288 1ypw_A Transitional endoplasmi 75.4 2.4 8.1E-05 50.0 5.3 18 211-228 238-255 (806)
289 3cmw_A Protein RECA, recombina 75.0 3 0.0001 52.7 6.3 127 203-363 1417-1569(1706)
290 2v3c_C SRP54, signal recogniti 74.7 3 0.0001 45.3 5.5 18 213-230 101-118 (432)
291 1yks_A Genome polyprotein [con 74.3 4.3 0.00015 44.0 6.7 68 246-325 177-245 (440)
292 1pzn_A RAD51, DNA repair and r 74.3 6.2 0.00021 41.4 7.7 17 319-335 230-246 (349)
293 3io5_A Recombination and repai 74.3 4.6 0.00016 42.0 6.5 90 213-333 30-124 (333)
294 1wrb_A DJVLGB; RNA helicase, D 73.7 27 0.00091 34.1 12.0 70 419-492 100-180 (253)
295 4a74_A DNA repair and recombin 73.5 6.6 0.00023 37.7 7.2 18 211-228 25-42 (231)
296 2v1x_A ATP-dependent DNA helic 73.0 10 0.00034 42.9 9.5 58 419-476 84-144 (591)
297 3eaq_A Heat resistant RNA depe 73.0 8.1 0.00028 37.2 7.7 70 247-326 32-105 (212)
298 2rb4_A ATP-dependent RNA helic 73.0 5.9 0.0002 36.7 6.5 70 247-326 35-108 (175)
299 1fuk_A Eukaryotic initiation f 72.6 8.5 0.00029 35.2 7.4 73 247-329 31-107 (165)
300 2pl3_A Probable ATP-dependent 72.6 8.1 0.00028 37.5 7.7 70 418-492 96-177 (236)
301 2yhs_A FTSY, cell division pro 72.5 18 0.00061 39.9 11.0 54 319-372 374-434 (503)
302 3cmw_A Protein RECA, recombina 72.0 3.7 0.00013 52.0 6.0 38 211-255 34-71 (1706)
303 1qde_A EIF4A, translation init 71.9 4.7 0.00016 38.8 5.7 70 418-492 81-161 (224)
304 1e9r_A Conjugal transfer prote 71.7 4.1 0.00014 44.0 5.7 44 210-260 52-95 (437)
305 1wp9_A ATP-dependent RNA helic 71.1 11 0.00039 40.0 9.1 70 418-492 51-131 (494)
306 1d9n_A Methyl-CPG-binding prot 70.2 2.2 7.6E-05 34.3 2.3 30 18-47 6-42 (75)
307 2i1q_A DNA repair and recombin 70.1 4.8 0.00016 41.5 5.6 28 203-230 85-117 (322)
308 1gku_B Reverse gyrase, TOP-RG; 69.8 9.8 0.00033 46.2 9.0 74 417-492 97-181 (1054)
309 1q57_A DNA primase/helicase; d 68.2 6.9 0.00024 43.1 6.7 37 212-254 243-279 (503)
310 2ky8_A Methyl-CPG-binding doma 68.1 2.4 8.3E-05 33.8 2.1 29 19-47 9-44 (72)
311 3ly5_A ATP-dependent RNA helic 68.1 18 0.00062 35.8 9.3 71 418-492 125-207 (262)
312 2pk2_A Cyclin-T1, protein TAT; 68.0 1.4 4.9E-05 46.7 0.9 9 531-539 239-247 (358)
313 3c2i_A Methyl-CPG-binding prot 66.7 3.6 0.00012 34.7 3.0 33 13-47 16-55 (97)
314 2xxa_A Signal recognition part 66.7 32 0.0011 37.1 11.4 20 213-232 102-121 (433)
315 2i4i_A ATP-dependent RNA helic 66.3 12 0.00042 39.3 8.0 71 246-326 276-350 (417)
316 2vhj_A Ntpase P4, P4; non- hyd 66.0 3.8 0.00013 42.7 3.6 20 211-230 123-142 (331)
317 3i5x_A ATP-dependent RNA helic 65.8 26 0.00089 38.7 10.9 78 246-330 339-420 (563)
318 1fuu_A Yeast initiation factor 65.1 15 0.00051 38.2 8.4 70 418-492 88-168 (394)
319 1qvr_A CLPB protein; coiled co 64.5 21 0.00071 42.2 10.2 17 213-229 590-606 (854)
320 2db3_A ATP-dependent RNA helic 64.5 21 0.00072 38.2 9.6 70 419-492 129-209 (434)
321 3jvv_A Twitching mobility prot 62.8 8.6 0.00029 40.5 5.8 17 211-227 123-139 (356)
322 3i32_A Heat resistant RNA depe 62.7 13 0.00046 38.0 7.1 72 247-328 29-104 (300)
323 3sqw_A ATP-dependent RNA helic 62.5 35 0.0012 38.0 11.3 78 246-330 288-369 (579)
324 1ofh_A ATP-dependent HSL prote 61.9 19 0.00066 36.0 8.2 18 211-228 50-67 (310)
325 1q0u_A Bstdead; DEAD protein, 60.7 6.4 0.00022 37.7 4.1 71 418-492 71-156 (219)
326 3pgw_S U1-70K; protein-RNA com 60.5 21 0.00071 38.7 8.5 16 685-700 417-432 (437)
327 1hv8_A Putative ATP-dependent 60.3 48 0.0016 33.7 11.1 70 418-492 73-153 (367)
328 2wv9_A Flavivirin protease NS2 59.9 11 0.00039 43.2 6.6 68 246-325 410-478 (673)
329 1tf7_A KAIC; homohexamer, hexa 59.4 29 0.00098 38.4 9.6 56 303-360 355-416 (525)
330 2d7d_A Uvrabc system protein B 59.1 1.1E+02 0.0038 34.7 14.8 77 246-332 445-525 (661)
331 3dkp_A Probable ATP-dependent 58.5 4.9 0.00017 39.3 2.8 73 418-493 97-182 (245)
332 2yjt_D ATP-dependent RNA helic 62.9 2.1 7.1E-05 39.8 0.0 72 247-328 31-106 (170)
333 2j0s_A ATP-dependent RNA helic 58.0 52 0.0018 34.3 11.1 71 418-492 104-185 (410)
334 3fht_A ATP-dependent RNA helic 57.9 13 0.00045 38.9 6.3 71 247-327 267-341 (412)
335 4ag6_A VIRB4 ATPase, type IV s 57.5 9.1 0.00031 40.6 4.9 41 210-257 34-74 (392)
336 3hws_A ATP-dependent CLP prote 57.1 16 0.00056 38.1 6.8 20 210-229 50-69 (363)
337 3eiq_A Eukaryotic initiation f 56.9 52 0.0018 34.2 10.9 72 418-492 107-189 (414)
338 4dzz_A Plasmid partitioning pr 56.9 14 0.00047 34.7 5.7 32 297-331 55-86 (206)
339 2eyu_A Twitching motility prot 56.4 5.3 0.00018 40.1 2.7 19 209-227 23-41 (261)
340 4a2p_A RIG-I, retinoic acid in 56.2 22 0.00074 39.0 8.0 71 419-493 55-137 (556)
341 1p9r_A General secretion pathw 55.7 11 0.00036 40.8 5.1 16 212-227 168-183 (418)
342 1c4o_A DNA nucleotide excision 55.5 1.3E+02 0.0043 34.3 14.4 77 246-332 439-519 (664)
343 3fmo_B ATP-dependent RNA helic 55.1 27 0.00091 35.5 7.9 117 409-535 149-286 (300)
344 2xau_A PRE-mRNA-splicing facto 54.7 47 0.0016 38.7 10.7 75 246-326 303-393 (773)
345 1s2m_A Putative ATP-dependent 54.7 35 0.0012 35.5 9.0 71 418-492 88-169 (400)
346 3nbx_X ATPase RAVA; AAA+ ATPas 54.0 15 0.0005 40.6 6.0 34 194-227 24-57 (500)
347 3o8b_A HCV NS3 protease/helica 53.8 19 0.00066 41.2 7.0 66 246-325 396-461 (666)
348 2r44_A Uncharacterized protein 53.7 9.2 0.00032 39.3 4.1 26 203-228 38-63 (331)
349 2r8r_A Sensor protein; KDPD, P 53.4 12 0.00042 36.7 4.7 25 213-237 8-32 (228)
350 3fkq_A NTRC-like two-domain pr 53.4 32 0.0011 36.1 8.3 29 218-253 151-179 (373)
351 1w36_B RECB, exodeoxyribonucle 52.9 19 0.00064 44.3 7.3 56 213-268 18-78 (1180)
352 4f4c_A Multidrug resistance pr 52.9 7.8 0.00027 48.3 3.9 41 318-358 1233-1273(1321)
353 3mm4_A Histidine kinase homolo 52.9 1.5E+02 0.005 27.6 13.0 125 210-361 19-161 (206)
354 3pey_A ATP-dependent RNA helic 52.8 20 0.00067 37.2 6.6 76 246-331 243-322 (395)
355 3tbk_A RIG-I helicase domain; 52.3 17 0.00056 39.9 6.2 70 419-492 52-133 (555)
356 3b85_A Phosphate starvation-in 52.2 14 0.00048 35.6 4.9 31 197-227 8-38 (208)
357 2v6i_A RNA helicase; membrane, 52.1 14 0.00049 39.7 5.5 66 247-324 172-238 (431)
358 1u0j_A DNA replication protein 51.7 26 0.00089 35.2 6.9 44 183-229 73-122 (267)
359 3nwn_A Kinesin-like protein KI 50.9 10 0.00034 40.1 3.8 26 203-228 95-122 (359)
360 2oap_1 GSPE-2, type II secreti 50.4 11 0.00037 41.9 4.1 38 188-227 238-276 (511)
361 1z6t_A APAF-1, apoptotic prote 50.3 55 0.0019 36.3 10.2 17 212-228 148-164 (591)
362 1lv7_A FTSH; alpha/beta domain 50.0 23 0.0008 34.7 6.3 18 211-228 45-62 (257)
363 4a2q_A RIG-I, retinoic acid in 49.9 30 0.001 40.4 8.1 70 419-492 296-377 (797)
364 3b5x_A Lipid A export ATP-bind 48.8 7.7 0.00026 43.7 2.7 42 318-360 496-537 (582)
365 2oca_A DAR protein, ATP-depend 48.7 48 0.0016 36.0 9.2 74 248-330 349-426 (510)
366 2z0m_A 337AA long hypothetical 48.2 36 0.0012 34.3 7.5 69 419-492 56-135 (337)
367 1um8_A ATP-dependent CLP prote 47.7 36 0.0012 35.5 7.7 19 211-229 72-90 (376)
368 2jlq_A Serine protease subunit 47.5 22 0.00077 38.4 6.1 67 247-325 189-256 (451)
369 3le4_A Microprocessor complex 47.4 9.9 0.00034 30.0 2.2 33 21-54 27-59 (79)
370 3a8t_A Adenylate isopentenyltr 47.4 9.6 0.00033 39.9 2.9 18 212-229 41-58 (339)
371 3b6e_A Interferon-induced heli 46.9 12 0.0004 35.3 3.4 55 418-476 81-140 (216)
372 2gza_A Type IV secretion syste 46.5 13 0.00044 39.1 3.9 20 207-226 171-190 (361)
373 1sky_E F1-ATPase, F1-ATP synth 46.4 15 0.00052 40.1 4.4 22 208-229 148-169 (473)
374 3vaa_A Shikimate kinase, SK; s 45.4 12 0.00041 35.4 3.1 20 210-229 24-43 (199)
375 1ojl_A Transcriptional regulat 45.2 9.8 0.00034 38.9 2.6 19 210-228 24-42 (304)
376 2nr8_A Kinesin-like protein KI 45.1 14 0.00048 39.0 3.8 26 203-228 94-121 (358)
377 1kgd_A CASK, peripheral plasma 45.1 11 0.00039 34.9 2.9 18 210-227 4-21 (180)
378 2z83_A Helicase/nucleoside tri 44.7 35 0.0012 36.9 7.1 67 247-325 191-258 (459)
379 1tue_A Replication protein E1; 44.5 24 0.00082 34.2 5.0 44 183-228 28-75 (212)
380 1bg2_A Kinesin; motor protein, 44.3 16 0.00054 38.0 4.0 26 203-228 68-95 (325)
381 3gbj_A KIF13B protein; kinesin 43.7 15 0.00051 38.6 3.8 26 203-228 83-110 (354)
382 4etp_A Kinesin-like protein KA 43.5 17 0.00057 39.0 4.2 26 203-228 131-158 (403)
383 1v8k_A Kinesin-like protein KI 43.4 16 0.00056 39.1 4.0 26 203-228 145-172 (410)
384 1t5c_A CENP-E protein, centrom 43.3 15 0.00053 38.5 3.8 26 203-228 68-95 (349)
385 3trf_A Shikimate kinase, SK; a 43.2 13 0.00046 34.2 3.1 19 211-229 5-23 (185)
386 4f4c_A Multidrug resistance pr 43.2 51 0.0017 40.9 9.0 41 318-358 570-610 (1321)
387 2zfi_A Kinesin-like protein KI 43.0 15 0.00052 38.8 3.7 26 203-228 80-107 (366)
388 1x88_A Kinesin-like protein KI 42.9 14 0.00049 38.8 3.5 27 202-228 78-106 (359)
389 3dc4_A Kinesin-like protein NO 42.9 16 0.00053 38.3 3.7 26 203-228 85-112 (344)
390 3b6u_A Kinesin-like protein KI 42.6 18 0.00061 38.3 4.1 26 203-228 92-119 (372)
391 3p32_A Probable GTPase RV1496/ 42.5 78 0.0027 32.8 9.2 16 213-228 81-96 (355)
392 1qhx_A CPT, protein (chloramph 42.5 11 0.00036 34.7 2.2 18 211-228 3-20 (178)
393 2pt7_A CAG-ALFA; ATPase, prote 42.2 13 0.00044 38.6 3.0 20 207-226 167-186 (330)
394 4a14_A Kinesin, kinesin-like p 42.2 18 0.0006 37.9 4.0 26 203-228 74-101 (344)
395 2vvg_A Kinesin-2; motor protei 41.8 18 0.00062 37.9 4.0 26 203-228 80-107 (350)
396 3exa_A TRNA delta(2)-isopenten 41.8 12 0.00041 38.8 2.6 17 212-228 4-20 (322)
397 2y65_A Kinesin, kinesin heavy 41.7 18 0.00062 38.2 4.0 26 203-228 75-102 (365)
398 2h58_A Kinesin-like protein KI 41.5 18 0.00063 37.6 4.0 26 203-228 71-98 (330)
399 2wbe_C Bipolar kinesin KRP-130 41.5 15 0.00052 38.9 3.4 27 202-228 90-118 (373)
400 3foz_A TRNA delta(2)-isopenten 41.1 14 0.00047 38.2 2.9 16 213-228 12-27 (316)
401 1goj_A Kinesin, kinesin heavy 41.0 16 0.00055 38.4 3.5 26 203-228 71-98 (355)
402 2qmh_A HPR kinase/phosphorylas 40.8 13 0.00044 35.9 2.5 18 211-228 34-51 (205)
403 3lw7_A Adenylate kinase relate 40.8 12 0.0004 33.8 2.2 16 213-228 3-18 (179)
404 3tau_A Guanylate kinase, GMP k 40.4 16 0.00054 34.9 3.1 18 211-228 8-25 (208)
405 2whx_A Serine protease/ntpase/ 40.4 38 0.0013 38.3 6.8 67 247-325 356-423 (618)
406 3lre_A Kinesin-like protein KI 40.2 19 0.00064 37.9 3.8 26 203-228 96-123 (355)
407 2ze6_A Isopentenyl transferase 39.8 15 0.00051 36.4 2.9 15 214-228 4-18 (253)
408 3t0q_A AGR253WP; kinesin, alph 39.6 15 0.00052 38.5 3.0 26 203-228 76-103 (349)
409 1lvg_A Guanylate kinase, GMP k 39.6 17 0.00058 34.4 3.2 18 210-227 3-20 (198)
410 3gk5_A Uncharacterized rhodane 39.5 28 0.00097 29.3 4.3 45 409-453 45-90 (108)
411 1ixz_A ATP-dependent metallopr 39.2 9.6 0.00033 37.5 1.4 53 172-227 11-65 (254)
412 2owm_A Nckin3-434, related to 38.9 18 0.00063 39.2 3.7 27 202-228 126-154 (443)
413 2heh_A KIF2C protein; kinesin, 38.6 20 0.00067 38.2 3.7 26 203-228 125-152 (387)
414 3cob_A Kinesin heavy chain-lik 38.6 17 0.00057 38.5 3.2 25 204-228 71-97 (369)
415 2fsf_A Preprotein translocase 38.5 64 0.0022 37.8 8.2 53 418-476 114-171 (853)
416 1f9v_A Kinesin-like protein KA 38.5 16 0.00053 38.4 2.9 26 203-228 75-102 (347)
417 2ykg_A Probable ATP-dependent 38.0 51 0.0017 37.4 7.5 70 420-493 62-143 (696)
418 3u06_A Protein claret segregat 37.9 22 0.00075 38.2 4.0 26 203-228 129-156 (412)
419 3iij_A Coilin-interacting nucl 37.8 21 0.00071 32.8 3.4 20 210-229 10-29 (180)
420 2r62_A Cell division protease 37.5 12 0.00042 36.9 1.9 18 211-228 44-61 (268)
421 2x8a_A Nuclear valosin-contain 37.5 6.8 0.00023 39.5 -0.1 53 172-227 5-60 (274)
422 2j41_A Guanylate kinase; GMP, 37.3 17 0.00059 34.0 2.8 20 209-228 4-23 (207)
423 1kht_A Adenylate kinase; phosp 37.2 15 0.00051 33.9 2.3 18 211-228 3-20 (192)
424 1cs1_A CGS, protein (cystathio 36.8 2.1E+02 0.0073 29.3 11.6 11 323-333 169-179 (386)
425 3vkg_A Dynein heavy chain, cyt 36.8 35 0.0012 46.0 6.3 49 181-230 873-925 (3245)
426 4a2w_A RIG-I, retinoic acid in 36.7 45 0.0015 39.8 6.9 70 419-492 296-377 (936)
427 1y63_A LMAJ004144AAA protein; 36.3 20 0.00069 33.3 3.1 18 211-228 10-27 (184)
428 2c9o_A RUVB-like 1; hexameric 36.2 31 0.001 37.4 5.0 18 212-229 64-81 (456)
429 3crm_A TRNA delta(2)-isopenten 35.9 18 0.00062 37.5 2.9 17 213-229 7-23 (323)
430 3pxg_A Negative regulator of g 35.9 32 0.0011 37.4 5.0 19 211-229 201-219 (468)
431 1iy2_A ATP-dependent metallopr 35.9 11 0.00037 37.8 1.1 52 172-227 35-89 (278)
432 3bfn_A Kinesin-like protein KI 35.7 17 0.00058 38.7 2.7 25 204-228 90-116 (388)
433 2ius_A DNA translocase FTSK; n 35.7 37 0.0013 37.5 5.5 18 211-228 167-184 (512)
434 1kag_A SKI, shikimate kinase I 35.6 23 0.00078 32.1 3.3 18 211-228 4-21 (173)
435 2rep_A Kinesin-like protein KI 35.4 18 0.00062 38.3 2.8 26 203-228 106-133 (376)
436 2r2a_A Uncharacterized protein 35.4 19 0.00063 34.5 2.7 17 214-230 8-24 (199)
437 3ney_A 55 kDa erythrocyte memb 35.3 20 0.00068 34.3 2.9 18 210-227 18-35 (197)
438 1zp6_A Hypothetical protein AT 35.2 19 0.00064 33.4 2.6 18 210-227 8-25 (191)
439 3nwj_A ATSK2; P loop, shikimat 35.1 25 0.00085 34.9 3.7 22 208-229 45-66 (250)
440 1zu4_A FTSY; GTPase, signal re 34.4 35 0.0012 35.1 4.8 17 214-230 108-124 (320)
441 3tr0_A Guanylate kinase, GMP k 34.2 23 0.00078 33.1 3.1 18 210-227 6-23 (205)
442 3kta_B Chromosome segregation 34.1 24 0.00081 33.0 3.1 41 320-360 86-126 (173)
443 1ly1_A Polynucleotide kinase; 34.1 18 0.0006 33.0 2.2 16 213-228 4-19 (181)
444 4akg_A Glutathione S-transfera 34.0 48 0.0016 44.2 6.9 49 181-230 890-942 (2695)
445 1tf5_A Preprotein translocase 34.0 96 0.0033 36.3 8.7 69 418-492 123-209 (844)
446 2qor_A Guanylate kinase; phosp 33.9 25 0.00086 33.1 3.4 19 210-228 11-29 (204)
447 4fcw_A Chaperone protein CLPB; 33.8 40 0.0014 33.8 5.1 17 213-229 49-65 (311)
448 1z6g_A Guanylate kinase; struc 33.8 25 0.00087 33.7 3.4 19 209-227 21-39 (218)
449 3kb2_A SPBC2 prophage-derived 33.7 22 0.00077 32.0 2.9 17 213-229 3-19 (173)
450 1ry6_A Internal kinesin; kines 33.1 27 0.00092 36.8 3.7 24 205-228 76-102 (360)
451 3eph_A TRNA isopentenyltransfe 32.7 26 0.00089 37.5 3.5 16 214-229 5-20 (409)
452 3d3q_A TRNA delta(2)-isopenten 32.4 23 0.00078 37.0 2.9 17 213-229 9-25 (340)
453 2r2a_A Uncharacterized protein 32.2 27 0.00093 33.3 3.3 39 321-360 88-132 (199)
454 4gl2_A Interferon-induced heli 32.1 12 0.00041 42.8 0.9 75 246-326 400-488 (699)
455 3l9o_A ATP-dependent RNA helic 32.1 41 0.0014 40.9 5.6 65 417-492 225-296 (1108)
456 2yvu_A Probable adenylyl-sulfa 32.1 42 0.0014 30.9 4.6 19 211-229 13-31 (186)
457 3a00_A Guanylate kinase, GMP k 31.9 28 0.00094 32.3 3.2 16 212-227 2-17 (186)
458 3g5j_A Putative ATP/GTP bindin 31.7 45 0.0015 28.7 4.4 45 409-453 78-125 (134)
459 1znw_A Guanylate kinase, GMP k 31.1 28 0.00094 33.0 3.1 21 207-227 16-36 (207)
460 2ewv_A Twitching motility prot 31.1 21 0.00073 37.6 2.5 18 210-227 135-152 (372)
461 1ex7_A Guanylate kinase; subst 31.0 23 0.00079 33.5 2.5 15 212-226 2-16 (186)
462 1jr3_D DNA polymerase III, del 31.0 63 0.0021 33.1 6.1 55 305-361 62-117 (343)
463 1g8p_A Magnesium-chelatase 38 30.8 30 0.001 35.4 3.6 18 211-228 45-62 (350)
464 2ipc_A Preprotein translocase 30.7 1.3E+02 0.0046 35.5 9.2 53 418-476 119-176 (997)
465 1c9k_A COBU, adenosylcobinamid 30.5 37 0.0013 31.9 3.8 44 214-268 2-45 (180)
466 3zq6_A Putative arsenical pump 30.5 47 0.0016 34.1 5.0 32 215-253 18-49 (324)
467 4eun_A Thermoresistant glucoki 30.4 29 0.00098 32.6 3.1 19 210-228 28-46 (200)
468 1byi_A Dethiobiotin synthase; 30.1 53 0.0018 31.1 5.0 30 218-254 9-38 (224)
469 1g41_A Heat shock protein HSLU 29.5 1E+02 0.0035 33.3 7.6 18 211-228 50-67 (444)
470 2rhm_A Putative kinase; P-loop 29.4 24 0.00082 32.5 2.3 17 212-228 6-22 (193)
471 2l82_A Designed protein OR32; 29.3 2.6E+02 0.0089 23.7 11.5 51 422-472 5-56 (162)
472 3cm0_A Adenylate kinase; ATP-b 29.3 22 0.00077 32.6 2.1 19 211-229 4-22 (186)
473 2zj8_A DNA helicase, putative 29.0 55 0.0019 37.6 5.7 67 419-492 68-144 (720)
474 1via_A Shikimate kinase; struc 29.0 39 0.0013 30.8 3.7 18 212-229 5-22 (175)
475 3kta_A Chromosome segregation 29.0 35 0.0012 31.2 3.4 15 213-227 28-42 (182)
476 2c95_A Adenylate kinase 1; tra 28.6 36 0.0012 31.4 3.4 20 210-229 8-27 (196)
477 3rc3_A ATP-dependent RNA helic 28.5 75 0.0026 36.3 6.7 73 249-332 323-401 (677)
478 1rj9_A FTSY, signal recognitio 28.2 52 0.0018 33.5 4.8 17 212-228 103-119 (304)
479 2bwj_A Adenylate kinase 5; pho 28.2 35 0.0012 31.5 3.3 19 210-228 11-29 (199)
480 3f9v_A Minichromosome maintena 28.1 25 0.00084 39.7 2.5 14 213-226 329-342 (595)
481 3dmn_A Putative DNA helicase; 28.1 3.4E+02 0.012 24.6 11.9 62 419-495 61-123 (174)
482 1gmx_A GLPE protein; transfera 28.1 60 0.0021 27.0 4.5 44 410-453 49-94 (108)
483 1f2t_A RAD50 ABC-ATPase; DNA d 28.0 39 0.0013 30.3 3.4 14 214-227 26-39 (149)
484 1knq_A Gluconate kinase; ALFA/ 28.0 28 0.00097 31.6 2.5 18 211-228 8-25 (175)
485 1in4_A RUVB, holliday junction 28.0 32 0.0011 35.5 3.1 17 212-228 52-68 (334)
486 3h75_A Periplasmic sugar-bindi 27.8 4E+02 0.014 26.6 11.8 34 406-441 193-226 (350)
487 1zuh_A Shikimate kinase; alpha 27.7 32 0.0011 31.0 2.8 18 212-229 8-25 (168)
488 3uie_A Adenylyl-sulfate kinase 27.7 29 0.001 32.6 2.6 20 210-229 24-43 (200)
489 3t61_A Gluconokinase; PSI-biol 27.7 32 0.0011 32.2 2.9 17 212-228 19-35 (202)
490 2p6r_A Afuhel308 helicase; pro 27.6 51 0.0018 37.7 5.1 68 418-492 67-144 (702)
491 2woo_A ATPase GET3; tail-ancho 27.5 49 0.0017 34.0 4.5 33 214-253 22-54 (329)
492 4gp7_A Metallophosphoesterase; 27.5 23 0.0008 32.5 1.8 17 211-227 9-25 (171)
493 2bdt_A BH3686; alpha-beta prot 27.5 33 0.0011 31.7 2.9 16 213-228 4-19 (189)
494 1m7g_A Adenylylsulfate kinase; 27.4 42 0.0014 31.7 3.7 31 198-229 13-43 (211)
495 1tev_A UMP-CMP kinase; ploop, 27.2 30 0.001 31.8 2.5 17 212-228 4-20 (196)
496 1nkt_A Preprotein translocase 27.0 1.3E+02 0.0045 35.4 8.3 53 418-476 151-208 (922)
497 3q2s_C Cleavage and polyadenyl 27.0 66 0.0023 31.2 5.1 20 516-537 113-132 (229)
498 3ug7_A Arsenical pump-driving 26.8 55 0.0019 34.0 4.8 33 214-253 29-61 (349)
499 1mdo_A ARNB aminotransferase; 26.2 1.9E+02 0.0066 29.4 9.0 10 323-332 156-165 (393)
500 1nks_A Adenylate kinase; therm 26.2 37 0.0013 31.1 3.0 19 214-232 4-22 (194)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-62 Score=548.50 Aligned_cols=390 Identities=43% Similarity=0.686 Sum_probs=355.0
Q ss_pred hcCCeEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHh
Q 005313 158 RRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK 237 (703)
Q Consensus 158 ~~~~i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~ 237 (703)
....+++.+...|.|+.+|++++|++.++++|.+.||..|+|+|+++|+.+++++|++++|+||+|||++|++|++..+.
T Consensus 40 ~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~ 119 (434)
T 2db3_A 40 NNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLL 119 (434)
T ss_dssp GGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hccC-CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc
Q 005313 238 RCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI 316 (703)
Q Consensus 238 ~~~~-~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~ 316 (703)
.... ....++++|||+||++|+.|+++++++++...++++.+++|+.....+...+..+++|+|+||++|.+++....+
T Consensus 120 ~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 199 (434)
T 2db3_A 120 EDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFI 199 (434)
T ss_dssp HSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSC
T ss_pred hcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCc
Confidence 6432 123467999999999999999999999999888999999999988778888888999999999999999998888
Q ss_pred cccCcccEEEecccccccCCChHHHHHHHHHc--CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccce
Q 005313 317 SLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV--PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAIT 394 (703)
Q Consensus 317 ~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l--~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~ 394 (703)
.+.++++|||||||+|++++|...+..++..+ ++.+|+|+||||+++.+..++..++.++..+.+.... .....+.
T Consensus 200 ~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~--~~~~~i~ 277 (434)
T 2db3_A 200 TFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG--GACSDVK 277 (434)
T ss_dssp CCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT--CCCTTEE
T ss_pred ccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc--ccccccc
Confidence 89999999999999999999999999999885 6789999999999999999999999988887765433 2344577
Q ss_pred EEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 005313 395 QHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLV 473 (703)
Q Consensus 395 ~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILV 473 (703)
+.+..+....|...|.+++..... ++||||++++.|+.+++.|. ..+.+..+||++++.+|+.+++.|++|+++|||
T Consensus 278 ~~~~~~~~~~k~~~l~~~l~~~~~--~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLv 355 (434)
T 2db3_A 278 QTIYEVNKYAKRSKLIEILSEQAD--GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLI 355 (434)
T ss_dssp EEEEECCGGGHHHHHHHHHHHCCT--TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHhCCC--CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 788888888899999999987654 49999999999999999998 468899999999999999999999999999999
Q ss_pred EcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEe-cCChHHHHHHHHHHHhccCcccHHHHHH
Q 005313 474 ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDM 551 (703)
Q Consensus 474 aTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~-~~d~~~~~~l~~~l~~~~~~v~~~L~~l 551 (703)
||+++++|||+|++++||+||+|.++++|+||+||+||.|+.|.+++|++ ..+...+..+.++|+...+.+|.+|.+|
T Consensus 356 aT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 356 ATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp ECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred EchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999999999999999999 5578889999999999999999998764
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-58 Score=508.38 Aligned_cols=391 Identities=44% Similarity=0.733 Sum_probs=350.8
Q ss_pred CeEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhcc
Q 005313 161 EVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCR 240 (703)
Q Consensus 161 ~i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~ 240 (703)
.+.+.+...|.++.+|++++|++.++++|...+|..|+|+|+++|+.++.++++|++||||+|||++|++|++..+....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999998876532
Q ss_pred CC--------------CCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHH
Q 005313 241 ND--------------PRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGR 306 (703)
Q Consensus 241 ~~--------------~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~ 306 (703)
.. ...++++|||+||++|+.|++++++++....++.+..++|+.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 11 1224689999999999999999999999888899999999988877778888889999999999
Q ss_pred HHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHH--cCC--CceEEEEeccCcHHHHHHHHHhhcCceecccc
Q 005313 307 LNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE--VPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382 (703)
Q Consensus 307 L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~--l~~--~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~ 382 (703)
|.+++....+.+.++++|||||||++++++|...+..++.. ++. ..|++++|||+++.+..++..++.++..+.+.
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 99999888888899999999999999999999999999874 333 68999999999999999999999888776654
Q ss_pred cchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHH
Q 005313 383 NVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVL 461 (703)
Q Consensus 383 ~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl 461 (703)
... .....+.+.+..+....+...|.++++....+.++||||+++++++.+++.|.+ .+.+..+|+++++++|..++
T Consensus 242 ~~~--~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 242 RVG--STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp ------CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCC--CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHH
Confidence 332 233456677777888889999999999887788999999999999999999974 68899999999999999999
Q ss_pred HHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhcc
Q 005313 462 NQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAK 541 (703)
Q Consensus 462 ~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~ 541 (703)
+.|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++.+.....++.+.+....
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHH
Q 005313 542 QQVPRELRDMAS 553 (703)
Q Consensus 542 ~~v~~~L~~la~ 553 (703)
+.++.++.+++.
T Consensus 400 ~~~~~~l~~~~~ 411 (417)
T 2i4i_A 400 QEVPSWLENMAY 411 (417)
T ss_dssp CCCCHHHHHHHT
T ss_pred CcCCHHHHHHHH
Confidence 999999999985
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.6e-55 Score=482.64 Aligned_cols=376 Identities=31% Similarity=0.573 Sum_probs=330.7
Q ss_pred EEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCC
Q 005313 163 TVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND 242 (703)
Q Consensus 163 ~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~ 242 (703)
.++..+.+.+..+|++++|++.++++|.+.||..|+++|+++|+.++++++++++++||+|||++|++|++..+...
T Consensus 26 ~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--- 102 (410)
T 2j0s_A 26 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--- 102 (410)
T ss_dssp CCCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---
T ss_pred ccCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc---
Confidence 34444555677899999999999999999999999999999999999999999999999999999999998876431
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcc
Q 005313 243 PRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 243 ~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
..++++|||+||++|+.|+.++++++....++.+..++|+.....+...+..+++|+|+||++|.+++....+.+.+++
T Consensus 103 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~ 181 (410)
T 2j0s_A 103 -VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 181 (410)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred -cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhhee
Confidence 1246899999999999999999999998889999999999887777777777899999999999999988888888999
Q ss_pred cEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEecc
Q 005313 323 YLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP 402 (703)
Q Consensus 323 ~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~ 402 (703)
+|||||||++++++|...+..++..+++..|+|++|||++..+.+++..++.++..+.+.... .....+.+.+..+..
T Consensus 182 ~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 259 (410)
T 2j0s_A 182 MLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE--LTLEGIKQFFVAVER 259 (410)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG--CSCTTEEEEEEEESS
T ss_pred EEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc--ccCCCceEEEEEeCc
Confidence 999999999999999999999999999999999999999999988888888888776654322 223345555555554
Q ss_pred c-hhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 005313 403 M-DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAAR 480 (703)
Q Consensus 403 ~-~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~ 480 (703)
. .+...|..++..... .++||||++++.++.+++.|. ..+.+..+|+++++.+|..+++.|++|+++|||||+++++
T Consensus 260 ~~~k~~~l~~~~~~~~~-~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 338 (410)
T 2j0s_A 260 EEWKFDTLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 338 (410)
T ss_dssp TTHHHHHHHHHHHHHTS-SEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSS
T ss_pred HHhHHHHHHHHHHhcCC-CcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhC
Confidence 4 477888888877643 599999999999999999997 4688999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCccc
Q 005313 481 GLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVP 545 (703)
Q Consensus 481 GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~ 545 (703)
|||+|++++||++|+|++...|+||+||+||.|++|.|++|+++.+...++++.+.+....+.++
T Consensus 339 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred cCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecc
Confidence 99999999999999999999999999999999999999999999999888888887766555554
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.6e-53 Score=464.79 Aligned_cols=370 Identities=32% Similarity=0.537 Sum_probs=325.0
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 005313 171 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVL 250 (703)
Q Consensus 171 ~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vL 250 (703)
....+|++++|++.++++|.+.||.+|+++|+++++.+++++++++++|||+|||++|++|++..+... ..++++|
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~----~~~~~~l 93 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK----LNKIQAL 93 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT----SCSCCEE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc----cCCccEE
Confidence 345689999999999999999999999999999999999999999999999999999999998876432 1245899
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccc
Q 005313 251 VLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330 (703)
Q Consensus 251 Il~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH 330 (703)
||+|+++|+.|+.++++++....++.+..++|+.....+...+...++|+|+||++|.+++......+.++++|||||||
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 94 IMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred EEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 99999999999999999999888899999998887666666666789999999999999988777788999999999999
Q ss_pred ccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHH
Q 005313 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410 (703)
Q Consensus 331 ~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 410 (703)
++.+..|...+..++..+++..|++++|||++..+.+++..++..+..+.+... .....+.+.+..+....|...+.
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~l~ 250 (400)
T 1s2m_A 174 KMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE---LTLKGITQYYAFVEERQKLHCLN 250 (400)
T ss_dssp HHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS---CBCTTEEEEEEECCGGGHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc---cccCCceeEEEEechhhHHHHHH
Confidence 999888888899999989999999999999999999999988888776654322 23344666777777778888888
Q ss_pred HHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccE
Q 005313 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV 489 (703)
Q Consensus 411 ~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~ 489 (703)
.+++.. ...++||||++++.++.+++.|.+ .+.+..+|++++..+|..+++.|++|+++|||||+++++|||+|++++
T Consensus 251 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 251 TLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNV 329 (400)
T ss_dssp HHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEE
T ss_pred HHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCE
Confidence 888775 446999999999999999999984 688999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHH
Q 005313 490 VVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548 (703)
Q Consensus 490 VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L 548 (703)
||++++|++...|+||+||++|.|++|.|++|+++.+...+.++.+.+....+.++..+
T Consensus 330 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 330 VINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred EEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 99999999999999999999999999999999999998888888877765555555443
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.8e-54 Score=471.62 Aligned_cols=375 Identities=31% Similarity=0.543 Sum_probs=313.7
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEE
Q 005313 170 PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTV 249 (703)
Q Consensus 170 p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~v 249 (703)
+....+|+++++++.+++.|.+.+|..|+++|+++|+.+++++++|+++|||+|||++|+++++..+.... .+.++
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~ 111 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL----KATQA 111 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS----CSCCE
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC----CceeE
Confidence 45678899999999999999999999999999999999999999999999999999999999988765421 24589
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhc-CCCcEEEECHHHHHHHHHhccccccCcccEEEec
Q 005313 250 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID-RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDE 328 (703)
Q Consensus 250 LIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~-~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDE 328 (703)
|||+|+++|+.|+.+++++++...++.+..++++......+..+. ..++|+|+||++|.+++....+.+..+++|||||
T Consensus 112 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDE 191 (414)
T 3eiq_A 112 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 191 (414)
T ss_dssp EEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECS
T ss_pred EEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEEC
Confidence 999999999999999999999888889999999887766666665 5689999999999999998888888999999999
Q ss_pred ccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEec-cchhHH
Q 005313 329 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA-PMDKHR 407 (703)
Q Consensus 329 aH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~-~~~k~~ 407 (703)
||++++++|...+..++..+++..|+|+||||++..+..++..++.++..+.+.... .....+.+.+.... ...+..
T Consensus 192 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 192 ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE--LTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp HHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC--CCTTSCCEEEEECSSSTTHHH
T ss_pred HHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCc--cCCCCceEEEEEeChHHhHHH
Confidence 999999999999999999999999999999999999999999999888776654322 12233444444444 344778
Q ss_pred HHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 005313 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 486 (703)
Q Consensus 408 ~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~ 486 (703)
.+..+++... ..++||||++++.++.+++.|.+ .+.+..+|+++++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 270 ~l~~~~~~~~-~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 348 (414)
T 3eiq_A 270 TLCDLYETLT-ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 348 (414)
T ss_dssp HHHHHHHSSC-CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGG
T ss_pred HHHHHHHhCC-CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccC
Confidence 8888887764 46899999999999999999984 688999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHHHHH
Q 005313 487 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDM 551 (703)
Q Consensus 487 v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L~~l 551 (703)
+++||++++|++..+|+||+||++|.|++|.|++|+++.+...++.+.+++......++..+.++
T Consensus 349 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 349 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp CSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999888888888777664
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.3e-52 Score=453.51 Aligned_cols=367 Identities=29% Similarity=0.517 Sum_probs=314.8
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
.+|++++|++.++++|.+.||..|+|+|.++|+.++.++++++++|||+|||++|++|++..+... ..++++|||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----~~~~~~lil~ 83 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV----TGQVSVLVMC 83 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC----TTCCCEEEEC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc----CCCeeEEEEC
Confidence 568899999999999999999999999999999999999999999999999999999998876432 1245899999
Q ss_pred CcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEEEecccc
Q 005313 254 PTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ 331 (703)
|+++|+.||.++++++.... ++.+..++|+.........+.. .++|+|+||++|.+++......+.++++|||||||+
T Consensus 84 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 84 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 163 (391)
T ss_dssp SCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHH
Confidence 99999999999999998765 7888889888776555555544 379999999999999988778889999999999999
Q ss_pred cccC-CChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHH
Q 005313 332 MLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410 (703)
Q Consensus 332 ml~~-gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 410 (703)
+.++ ++...+..++..++...|+|++|||++..+..++..++.++..+.+..... .....+.+.+..+....+...+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 164 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK-LTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCC-CCCTTCEEEEEECCGGGHHHHHH
T ss_pred HhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccc-cCcccceEEEEEcCchhHHHHHH
Confidence 9874 678888899998999999999999999999999999998887766543222 22344566667777788888888
Q ss_pred HHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccE
Q 005313 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV 489 (703)
Q Consensus 411 ~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~ 489 (703)
.+++.. ...++||||+++++++.+++.|.+ .+.+..+|+++++.+|..+++.|++++.+|||||+++++|||+|++++
T Consensus 243 ~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 243 DLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 888876 557999999999999999999974 678999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCC-hHHHHHHHHHHHhccCcccH
Q 005313 490 VVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD-SRYASDLIKLLEGAKQQVPR 546 (703)
Q Consensus 490 VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d-~~~~~~l~~~l~~~~~~v~~ 546 (703)
||++++|++...|+||+||++|.|++|.|++|+.+.+ ..+...+.+.+....++++.
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 9999999999999999999999999999999998653 34555555555444444443
No 7
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.9e-52 Score=479.96 Aligned_cols=355 Identities=30% Similarity=0.532 Sum_probs=297.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHH
Q 005313 181 FPPELLREVHNAGFSSPTPIQAQSWPIAL--QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 258 (703)
Q Consensus 181 l~~~l~~~l~~~g~~~p~piQ~~ai~~il--~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreL 258 (703)
|+++++++|...||..|+|+|+++|+.++ .++++|++||||+|||++|++|++..+.........++++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 99999999999999999999999999999 7789999999999999999999999887754443446789999999999
Q ss_pred HHHHHHHHHHhcC----CCCceEEEeeCCCCCCchhhhhcC-CCcEEEECHHHHHHHHHhc-cccccCcccEEEeccccc
Q 005313 259 ATQIQDEAVKFGK----SSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEADRM 332 (703)
Q Consensus 259 a~Q~~~~~~k~~~----~~~i~v~~~~gg~~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~-~~~l~~~~~IViDEaH~m 332 (703)
+.|+.++++++.. ...+.+..++++.....++..+.. .++|+|+||++|.+++... ...+..+++|||||||+|
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 9999999998753 234677888888877666666644 6899999999999988764 456788999999999999
Q ss_pred ccCCChHHHHHHHHHcC-------CCceEEEEeccCcHHHHHHHHHhhcCceecccccc--hhhhccccceEEEEEeccc
Q 005313 333 LDMGFEPQIRKIVKEVP-------ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNV--DELAANKAITQHIEVLAPM 403 (703)
Q Consensus 333 l~~gf~~~i~~il~~l~-------~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~--~~~~~~~~i~~~~~~~~~~ 403 (703)
++++|.+.+..|+..++ +.+|+|+||||++..+..++..++..+..+.+... ........+.+.+......
T Consensus 188 ~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 267 (579)
T 3sqw_A 188 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267 (579)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecch
Confidence 99999999998887753 36799999999999999999888887665543221 1122233344444444432
Q ss_pred -hh----HHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 005313 404 -DK----HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA 474 (703)
Q Consensus 404 -~k----~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVa 474 (703)
.+ ...+...+.....+.++||||++++.|+.+++.|.+ .+.+..+|+++++.+|..+++.|++|+++||||
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVa 347 (579)
T 3sqw_A 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 347 (579)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 22 233344444446678999999999999999999975 678999999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHH
Q 005313 475 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIK 535 (703)
Q Consensus 475 Tdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~ 535 (703)
|+++++|||+|+|++||++++|.+++.|+||+||+||.|+.|.|++|+.+.+..+++.+.+
T Consensus 348 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~ 408 (579)
T 3sqw_A 348 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 408 (579)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHH
T ss_pred cchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988777766654
No 8
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.1e-52 Score=480.31 Aligned_cols=357 Identities=30% Similarity=0.522 Sum_probs=297.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHH
Q 005313 181 FPPELLREVHNAGFSSPTPIQAQSWPIAL--QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 258 (703)
Q Consensus 181 l~~~l~~~l~~~g~~~p~piQ~~ai~~il--~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreL 258 (703)
|++.++++|.+.||..|+|+|.++|+.++ .++++|++||||+|||++|++|++..+.........++++|||+||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6789999999999999999999999987755444445689999999999
Q ss_pred HHHHHHHHHHhcCC----CCceEEEeeCCCCCCchhhhhc-CCCcEEEECHHHHHHHHHhc-cccccCcccEEEeccccc
Q 005313 259 ATQIQDEAVKFGKS----SRISCTCLYGGAPKGPQLKDID-RGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEADRM 332 (703)
Q Consensus 259 a~Q~~~~~~k~~~~----~~i~v~~~~gg~~~~~~~~~l~-~g~dIlV~Tp~~L~~~l~~~-~~~l~~~~~IViDEaH~m 332 (703)
+.|++++++++... ..+.+..++++.....++..+. ..++|+|+||++|.+++... ...+..+++|||||||+|
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987432 3456788888887666666653 36899999999999988754 345788999999999999
Q ss_pred ccCCChHHHHHHHHHcC-------CCceEEEEeccCcHHHHHHHHHhhcCceecccccc--hhhhccccceEEEEEeccc
Q 005313 333 LDMGFEPQIRKIVKEVP-------ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNV--DELAANKAITQHIEVLAPM 403 (703)
Q Consensus 333 l~~gf~~~i~~il~~l~-------~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~--~~~~~~~~i~~~~~~~~~~ 403 (703)
++++|.+.+..|+..++ +.+|+|+||||++..+..++..++..+..+.+... ........+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 99999999998877653 36799999999999999998888887655443221 1122223344444444332
Q ss_pred -hh----HHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 005313 404 -DK----HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA 474 (703)
Q Consensus 404 -~k----~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVa 474 (703)
.+ ...+...+.....+.++||||++++.|+.+++.|.+ .+.+..+|+++++.+|..+++.|++|+++||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22 223334444446678999999999999999999975 678999999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHH
Q 005313 475 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLL 537 (703)
Q Consensus 475 Tdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l 537 (703)
|+++++|||+|+|++||++++|.++..|+||+||+||.|+.|.|++|+.+.+..+++.+.+..
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998888777776553
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.8e-51 Score=442.87 Aligned_cols=357 Identities=34% Similarity=0.585 Sum_probs=315.1
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 005313 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 251 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLI 251 (703)
..+|++++|++.+++.|.+.||..|+|+|+++|+.++++ +++++++|||+|||++|+++++..+... .+.++||
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~li 79 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-----NGIEAII 79 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-----SSCCEEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-----CCCcEEE
Confidence 467999999999999999999999999999999999998 6999999999999999999988876431 3468999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccc
Q 005313 252 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ 331 (703)
|+|+++|+.|+.++++++....++.+..++++.........+. .++|+|+||++|.+.+......+.++++|||||||+
T Consensus 80 l~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 80 LTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp ECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred EcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 9999999999999999998888888888988876655555444 589999999999999988778889999999999999
Q ss_pred cccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHH
Q 005313 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411 (703)
Q Consensus 332 ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 411 (703)
+.++++...+..++..+++..++|++|||++..+..++..++.++..+.... ...+.+.+..+...++...+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI------NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS------SSSSEEEEEECCGGGHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC------CCCceEEEEEeChHHHHHHHHH
Confidence 9999999999999999999999999999999999988888887765544322 2245566666777788888877
Q ss_pred HHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEE
Q 005313 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVV 490 (703)
Q Consensus 412 ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~V 490 (703)
+++ ....++||||+++++++.+++.|.+ .+.+..+|++++..+|..+++.|++++.+|||||+++++|||+|++++|
T Consensus 233 ~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 776 4567999999999999999999984 6789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCc
Q 005313 491 VNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQ 543 (703)
Q Consensus 491 I~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~ 543 (703)
|++++|+++.+|+||+||++|.|++|.+++++++.+......+.+.+......
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred EEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999999999999999988888887777554443
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.4e-50 Score=445.02 Aligned_cols=366 Identities=28% Similarity=0.468 Sum_probs=306.9
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCC
Q 005313 170 PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGP 247 (703)
Q Consensus 170 p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~ 247 (703)
..++.+|+++++++.++++|.+.||..|+++|.++|+.++++ +++|+++|||+|||++|++|++..+... ..++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----~~~~ 96 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----NKYP 96 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----SCSC
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc----CCCC
Confidence 345788999999999999999999999999999999999997 8999999999999999999998876542 2245
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh-ccccccCcccEE
Q 005313 248 TVLVLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-RRISLNQVSYLV 325 (703)
Q Consensus 248 ~vLIl~PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~-~~~~l~~~~~IV 325 (703)
++|||+|+++|+.|+.+.++++.... ++.+....++...... ....++|+|+||++|.+++.. ..+.+.++++||
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iV 173 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 173 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEE
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEE
Confidence 89999999999999999999987753 5677777766544322 233579999999999998864 556678999999
Q ss_pred Eeccccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEecc-c
Q 005313 326 LDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP-M 403 (703)
Q Consensus 326 iDEaH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~-~ 403 (703)
|||||++++ .++...+..++..++...|+|++|||++..+..++..++.++..+.+.... .....+.+.+..... .
T Consensus 174 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 251 (412)
T 3fht_A 174 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE--ETLDTIKQYYVLCSSRD 251 (412)
T ss_dssp EETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG--SSCTTEEEEEEECSSHH
T ss_pred EeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc--ccccCceEEEEEcCChH
Confidence 999999987 678888999999999999999999999999999999999888877664432 223334455444443 4
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccC
Q 005313 404 DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGL 482 (703)
Q Consensus 404 ~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GI 482 (703)
.+...+..++.... ..++||||+++++++.+++.|.+ .+.+..+|+++++.+|..+++.|++|+++|||||+++++||
T Consensus 252 ~~~~~l~~~~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 330 (412)
T 3fht_A 252 EKFQALCNLYGAIT-IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 330 (412)
T ss_dssp HHHHHHHHHHHHHS-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSC
T ss_pred HHHHHHHHHHhhcC-CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCC
Confidence 56777777777654 46999999999999999999984 67899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCC------CCHHHHHHHHhccCCCCCccEEEEEEecCC-hHHHHHHHHHHHhccCccc
Q 005313 483 DIKDIRVVVNYDFP------TGVEDYVHRIGRTGRAGATGVAYTFFGDQD-SRYASDLIKLLEGAKQQVP 545 (703)
Q Consensus 483 DIp~v~~VI~~d~P------~s~~~yiQriGRagR~G~~g~~i~~~~~~d-~~~~~~l~~~l~~~~~~v~ 545 (703)
|+|++++||++|+| .+..+|+||+||+||.|+.|.|++|++..+ ......+.+.+......++
T Consensus 331 dip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 331 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp CCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 99999999999999 467899999999999999999999998664 5566666666655444443
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.8e-50 Score=440.97 Aligned_cols=355 Identities=32% Similarity=0.542 Sum_probs=301.1
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEE
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTV 249 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~v 249 (703)
...+|++++|++.++++|.+.+|..|+|+|.++++.++.+ +++|+++|||+|||++|+++++..+... ..++++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~----~~~~~~ 78 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE----DASPQA 78 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----CCSCCE
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC----CCCccE
Confidence 4578999999999999999999999999999999999998 8999999999999999999998876432 134689
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecc
Q 005313 250 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329 (703)
Q Consensus 250 LIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEa 329 (703)
|||+|+++|+.|+.++++++....++.+..++++...... ...++|+|+||++|.+++......+.++++||||||
T Consensus 79 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 154 (395)
T 3pey_A 79 ICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEA 154 (395)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEECh
Confidence 9999999999999999999998888888888776543322 235899999999999999888888999999999999
Q ss_pred ccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEe-ccchhHH
Q 005313 330 DRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL-APMDKHR 407 (703)
Q Consensus 330 H~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~-~~~~k~~ 407 (703)
|++.+ +++...+..++..+++..|+|++|||+++.+..++..++.++..+.+.... .....+.+.+... ....+..
T Consensus 155 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 155 DNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE--VNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp HHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG--CSCTTEEEEEEECSSHHHHHH
T ss_pred hhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc--cccccccEEEEEcCchHHHHH
Confidence 99987 678888999999999999999999999999999999998887766554322 2223344444444 3345666
Q ss_pred HHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 005313 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 486 (703)
Q Consensus 408 ~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~ 486 (703)
.+..++... ...++||||+++++++.+++.|.+ .+.+..+|+++++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 666666554 457999999999999999999984 678999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCC------CHHHHHHHHhccCCCCCccEEEEEEecCCh-HHHHHHHHHH
Q 005313 487 IRVVVNYDFPT------GVEDYVHRIGRTGRAGATGVAYTFFGDQDS-RYASDLIKLL 537 (703)
Q Consensus 487 v~~VI~~d~P~------s~~~yiQriGRagR~G~~g~~i~~~~~~d~-~~~~~l~~~l 537 (703)
+++||++|+|+ +...|+||+||++|.|++|.|++|+.+.+. .....+.+.+
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999976543 3444444444
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-52 Score=459.17 Aligned_cols=374 Identities=31% Similarity=0.549 Sum_probs=186.4
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCE
Q 005313 169 VPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPT 248 (703)
Q Consensus 169 ~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~ 248 (703)
..++..+|++++|++.+++.+...||.+|+++|+++++.+++++++++++|||+|||++|++|++..+... ..+++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~----~~~~~ 91 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----VKAPQ 91 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT----CCSCC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc----CCCCC
Confidence 34567889999999999999999999999999999999999999999999999999999999998876542 22468
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEec
Q 005313 249 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDE 328 (703)
Q Consensus 249 vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDE 328 (703)
+|||+|+++|+.|+.+++.++....++.+..++|+.........+. .++|+|+||++|.+.+......+.++++|||||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 92 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 9999999999999999999999888899999998876555444443 589999999999999988778888999999999
Q ss_pred ccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEecc-chhHH
Q 005313 329 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP-MDKHR 407 (703)
Q Consensus 329 aH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~-~~k~~ 407 (703)
||++.++++...+..++..+++..|++++|||++..+.+++..++.++..+.+.... . ....+.+.+..+.. ..+..
T Consensus 171 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 171 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE-L-TLEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-------------------------
T ss_pred hHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcc-c-cCCCceEEEEEcCchhhHHH
Confidence 999999999999999999999999999999999999999999998888776554322 1 11223333332322 23556
Q ss_pred HHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 005313 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 486 (703)
Q Consensus 408 ~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~ 486 (703)
.+..+++.. ...++||||+++++++.+++.|.+ .+.+..+|+++++.+|..+++.|++|+.+|||||+++++|||+|+
T Consensus 249 ~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 249 CLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 666666554 346999999999999999999974 678999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHHHH
Q 005313 487 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRD 550 (703)
Q Consensus 487 v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L~~ 550 (703)
+++||++++|+++..|+||+||++|.|++|.|++|+.+.+......+.+.+......++..+.+
T Consensus 328 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 328 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhh
Confidence 9999999999999999999999999999999999999998888888888777666666655544
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-49 Score=423.43 Aligned_cols=335 Identities=34% Similarity=0.552 Sum_probs=286.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHH
Q 005313 181 FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 260 (703)
Q Consensus 181 l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~ 260 (703)
|+++|.+.|.+.||..|+|+|+++++.+++++++++++|||+|||++|+++++.. +.++|||+|+++|+.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----------~~~~liv~P~~~L~~ 70 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------GMKSLVVTPTRELTR 70 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----------cCCEEEEeCCHHHHH
Confidence 5789999999999999999999999999999999999999999999999988763 347999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHH
Q 005313 261 QIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQ 340 (703)
Q Consensus 261 Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~ 340 (703)
|+.++++++....++.+..++++.....+...+.. ++|+|+||++|.+++....+.+.++++|||||||++.++++...
T Consensus 71 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~ 149 (337)
T 2z0m_A 71 QVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDD 149 (337)
T ss_dssp HHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHH
Confidence 99999999988888899999988776655555443 89999999999999887777788999999999999999999999
Q ss_pred HHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCC
Q 005313 341 IRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGS 420 (703)
Q Consensus 341 i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~ 420 (703)
+..++..++...+++++|||++..+.+.+..++.++..+... .....+.+.+..+....+. ....+.. ..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~ 221 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRS--KVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHH--HHHHHHT-CCCS
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHH--HHHHHHh-CCCC
Confidence 999999999999999999999999999999988876655322 1122233444444333222 2234433 4567
Q ss_pred eEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHH
Q 005313 421 KIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVE 500 (703)
Q Consensus 421 kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~ 500 (703)
++||||+++++++.+++.|. .+..+|++++..+|.++++.|++|+++|||||+++++|||+|++++||++++|+++.
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~ 298 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLR 298 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHH
T ss_pred cEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHH
Confidence 99999999999999999887 578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHH
Q 005313 501 DYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLE 538 (703)
Q Consensus 501 ~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~ 538 (703)
.|+||+||++|.|++|.|++|+. .+....+++.+.+.
T Consensus 299 ~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 299 TYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999 77777777766653
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.3e-51 Score=459.58 Aligned_cols=372 Identities=29% Similarity=0.477 Sum_probs=180.2
Q ss_pred CCeEEcCCCCCCC---CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHH
Q 005313 160 HEVTVSGDEVPPP---FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFI 234 (703)
Q Consensus 160 ~~i~~~~~~~p~p---~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~ 234 (703)
..+++.....+.| +.+|++++|++.++++|.+.+|..|+++|.++|+.++.+ +++|++|+||+|||++|++|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 75 NQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp SCEEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHT
T ss_pred ccceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHH
Confidence 4455555544444 578999999999999999999999999999999999987 89999999999999999999887
Q ss_pred HHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh
Q 005313 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM 313 (703)
Q Consensus 235 ~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~ 313 (703)
.+... ..++++|||+||++|+.|+.+.++++.... .+.+.+..++...... ....++|+|+||++|.+++..
T Consensus 155 ~l~~~----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~ 227 (479)
T 3fmp_B 155 QVEPA----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSK 227 (479)
T ss_dssp TCCTT----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTT
T ss_pred HHhhc----CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHh
Confidence 76442 224589999999999999999999887653 5666666666543322 133579999999999998864
Q ss_pred -ccccccCcccEEEeccccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccc
Q 005313 314 -RRISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391 (703)
Q Consensus 314 -~~~~l~~~~~IViDEaH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~ 391 (703)
..+.+.++++|||||||+|++ .++...+..++..++..+|+|++|||++..+..++..++.++..+.+..... ...
T Consensus 228 ~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 305 (479)
T 3fmp_B 228 LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE--TLD 305 (479)
T ss_dssp SCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------
T ss_pred cCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc--CcC
Confidence 456678999999999999987 6788888899999999999999999999999999999998888776654322 222
Q ss_pred cceEEEEEecc-chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCC
Q 005313 392 AITQHIEVLAP-MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRS 469 (703)
Q Consensus 392 ~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~ 469 (703)
.+.+.+..+.. ..+...|..++... ...++||||++++.|+.+++.|.+ .+.+..+|+++++.+|..+++.|++|++
T Consensus 306 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~ 384 (479)
T 3fmp_B 306 TIKQYYVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 384 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 33444433332 45566666666554 346899999999999999999974 6789999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCccEEEEecCCC------CHHHHHHHHhccCCCCCccEEEEEEecCC-hHHHHHHHHHHHhcc
Q 005313 470 PVLVATDVAARGLDIKDIRVVVNYDFPT------GVEDYVHRIGRTGRAGATGVAYTFFGDQD-SRYASDLIKLLEGAK 541 (703)
Q Consensus 470 ~ILVaTdv~~~GIDIp~v~~VI~~d~P~------s~~~yiQriGRagR~G~~g~~i~~~~~~d-~~~~~~l~~~l~~~~ 541 (703)
+|||||+++++|||+|++++||+||+|. +...|+||+||+||.|+.|.|++|++..+ ..+...+.+.+....
T Consensus 385 ~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~ 463 (479)
T 3fmp_B 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 463 (479)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999995 66899999999999999999999998665 555555655554433
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.2e-47 Score=437.94 Aligned_cols=339 Identities=19% Similarity=0.292 Sum_probs=271.9
Q ss_pred cCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 177 DATGFPPELLREVHN-AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 177 ~~~~l~~~l~~~l~~-~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
.++++++.+.+.|++ .||..|+|+|+++|+.+++++++|+++|||+|||++|++|++.. ..++|||+|+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------~g~~lVisP~ 93 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------DGFTLVICPL 93 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----------SSEEEEECSC
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----------CCcEEEEeCH
Confidence 347788999999998 59999999999999999999999999999999999999998652 2489999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh---hh---cCCCcEEEECHHHHHH---HHH--hccccccCcccE
Q 005313 256 RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DI---DRGVDIVVATPGRLND---ILE--MRRISLNQVSYL 324 (703)
Q Consensus 256 reLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l---~~g~dIlV~Tp~~L~~---~l~--~~~~~l~~~~~I 324 (703)
++|+.|+.+.++++ ++.+..+.++........ .+ ...++|+|+||++|.. ++. .....+.++++|
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~i 169 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRI 169 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEE
Confidence 99999999999987 577788888765443322 22 3468999999998842 222 224456789999
Q ss_pred EEecccccccCC--ChHHHHH--HHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEe
Q 005313 325 VLDEADRMLDMG--FEPQIRK--IVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL 400 (703)
Q Consensus 325 ViDEaH~ml~~g--f~~~i~~--il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~ 400 (703)
||||||++++|+ |.+.+.. ++....+..++|+||||++..+...+..++..+..+.+... .....+...+...
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~~~ 246 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNRPNLYYEVRQK 246 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCCTTEEEEEEEC
T ss_pred EEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCCcccEEEEEeC
Confidence 999999999988 7777665 34445567899999999999988888877765433222111 1112222222222
Q ss_pred c--cchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 005313 401 A--PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV 477 (703)
Q Consensus 401 ~--~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv 477 (703)
. ...+...|..+++....+.++||||++++.++.+++.|. ..+.+..+|++|++++|..+++.|++|+++|||||++
T Consensus 247 ~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a 326 (591)
T 2v1x_A 247 PSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA 326 (591)
T ss_dssp CSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred CCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 1 123445566666555567899999999999999999998 4688999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHH
Q 005313 478 AARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASD 532 (703)
Q Consensus 478 ~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~ 532 (703)
+++|||+|+|++||+|++|.+++.|+|++||+||.|+++.|++|+...|......
T Consensus 327 ~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~ 381 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISS 381 (591)
T ss_dssp SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHH
T ss_pred hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998766554433
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2e-46 Score=426.51 Aligned_cols=341 Identities=22% Similarity=0.351 Sum_probs=274.2
Q ss_pred CCCCcCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 005313 173 FMSFDATGFPPELLREVHN-AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 251 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~-~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLI 251 (703)
+.+|++++|++.+.+.|.+ .||..|+|+|.++|+.+++++++++++|||+|||++|++|++.. ..++||
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------~g~~lv 70 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL----------NGLTVV 70 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS----------SSEEEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh----------CCCEEE
Confidence 3578999999999999998 79999999999999999999999999999999999999998743 237999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh---hhh-cCCCcEEEECHHHHHHHHHhccccccCcccEEEe
Q 005313 252 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDI-DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l-~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViD 327 (703)
|+|+++|+.|+.+.++++ ++.+..+.++....... ..+ ...++|+|+||++|........+...++++||||
T Consensus 71 i~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 999999999999999886 46677777766543322 222 2358999999999964333333445789999999
Q ss_pred cccccccCC--ChHHHHHH---HHHcCCCceEEEEeccCcHHHHHHHHHhhc-CceecccccchhhhccccceEEEEEec
Q 005313 328 EADRMLDMG--FEPQIRKI---VKEVPARRQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANKAITQHIEVLA 401 (703)
Q Consensus 328 EaH~ml~~g--f~~~i~~i---l~~l~~~~q~L~lSAT~p~~v~~l~~~~l~-~~~~i~i~~~~~~~~~~~i~~~~~~~~ 401 (703)
|||++.+|+ |.+.+..+ ...+ +..++|++|||++..+...+...+. ....+.+.... ...+ .+.+..
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~----r~~l--~~~v~~ 219 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD----RPNI--RYMLME 219 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC----CTTE--EEEEEE
T ss_pred CccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC----CCce--EEEEEe
Confidence 999999987 76666544 4444 4688999999999887765555443 22222222211 1122 233444
Q ss_pred cchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 005313 402 PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAAR 480 (703)
Q Consensus 402 ~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~ 480 (703)
...+...|..+++.. .+.++||||++++.++.+++.|.+ .+.+..+|+++++++|..+++.|++++++|||||+++++
T Consensus 220 ~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 456677777777765 567999999999999999999984 688999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHH
Q 005313 481 GLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIK 535 (703)
Q Consensus 481 GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~ 535 (703)
|||+|+|++||++++|.+++.|+||+||+||.|+++.|++|++..|....+.++.
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998777665554443
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-48 Score=439.41 Aligned_cols=366 Identities=27% Similarity=0.462 Sum_probs=255.7
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCC
Q 005313 170 PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGP 247 (703)
Q Consensus 170 p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~ 247 (703)
|..+..|...++++.+++.+...++..|+++|+++|+.++++ +++|+++|||+|||++|+++++..+.... .++
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~----~~~ 190 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV----PKP 190 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC----CSC
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC----CCc
Confidence 445566777789999999999999999999999999999998 99999999999999999999988875422 245
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEe
Q 005313 248 TVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327 (703)
Q Consensus 248 ~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViD 327 (703)
++|||+|+++|+.|+.+++++++....+.+....++..... ....++|+|+||++|.+.+....+.+.++++||||
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiD 266 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLD 266 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEC
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEe
Confidence 89999999999999999999998877777666555543322 22358999999999999998888888999999999
Q ss_pred ccccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEe-ccchh
Q 005313 328 EADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL-APMDK 405 (703)
Q Consensus 328 EaH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~-~~~~k 405 (703)
|||++.+ .++...+..++..+++..|+|++|||+++.+..+...++.++..+.+..... ....+.+.+... ....+
T Consensus 267 EaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~k 344 (508)
T 3fho_A 267 EADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL--SVEGIKQLYMDCQSEEHK 344 (508)
T ss_dssp CHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC------CCCCEEEEC--CHHH
T ss_pred chhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccC--CcccceEEEEECCchHHH
Confidence 9999987 6789999999999999999999999999999999999988877765543221 112233333333 34556
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 005313 406 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDI 484 (703)
Q Consensus 406 ~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDI 484 (703)
...+..+++.. ...++||||+++++++.+++.|.+ .+.+..+|+++++.+|+.+++.|++|+++|||||+++++|||+
T Consensus 345 ~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDi 423 (508)
T 3fho_A 345 YNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDV 423 (508)
T ss_dssp HHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCC
T ss_pred HHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCc
Confidence 66676666554 457999999999999999999974 6789999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCC------CCHHHHHHHHhccCCCCCccEEEEEEec-CChHHHHHHHHHHHhccCcccH
Q 005313 485 KDIRVVVNYDFP------TGVEDYVHRIGRTGRAGATGVAYTFFGD-QDSRYASDLIKLLEGAKQQVPR 546 (703)
Q Consensus 485 p~v~~VI~~d~P------~s~~~yiQriGRagR~G~~g~~i~~~~~-~d~~~~~~l~~~l~~~~~~v~~ 546 (703)
|++++||++++| .++..|+||+||+||.|+.|.|++|+.+ .+......+.+.+......++.
T Consensus 424 p~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 424 SQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp TTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred cCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 999999999999 7899999999999999999999999984 4556666666666555554443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.2e-46 Score=416.10 Aligned_cols=325 Identities=22% Similarity=0.329 Sum_probs=262.0
Q ss_pred HHHHHHHHC-CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH
Q 005313 184 ELLREVHNA-GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 262 (703)
Q Consensus 184 ~l~~~l~~~-g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~ 262 (703)
++.+.+++. +| +|+|+|.++|+.+++++++++++|||+|||++|+++++..+.. ++++|||+||++|+.|+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-------~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------GKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-------TCCEEEEESSHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-------CCEEEEEECCHHHHHHH
Confidence 344555553 45 8999999999999999999999999999999999988776622 56899999999999999
Q ss_pred HHHHHHhcCCCCceEEEeeCCCCC---CchhhhhcCC-CcEEEECHHHHHHHHHhccccccCcccEEEecccccc-----
Q 005313 263 QDEAVKFGKSSRISCTCLYGGAPK---GPQLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML----- 333 (703)
Q Consensus 263 ~~~~~k~~~~~~i~v~~~~gg~~~---~~~~~~l~~g-~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml----- 333 (703)
.+.+++++. .++.+..++|+... ..++..+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccch
Confidence 999999988 88999999999876 4556666665 99999999999888764 667789999999998654
Q ss_pred -----c-CCChHH-HHHHHHHcC-----------CCceEEEEecc-CcHHHH-HHHHHhhcCceecccccchhhhccccc
Q 005313 334 -----D-MGFEPQ-IRKIVKEVP-----------ARRQTLMYTAT-WPREVR-KIAADLLVNPVQVNIGNVDELAANKAI 393 (703)
Q Consensus 334 -----~-~gf~~~-i~~il~~l~-----------~~~q~L~lSAT-~p~~v~-~l~~~~l~~~~~i~i~~~~~~~~~~~i 393 (703)
+ ++|.+. +..++..++ ...|+|++||| +|..+. .+...++. +.+... ......+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~i 231 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL--VSVARNI 231 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCC--CCCCCSE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcc--ccccccc
Confidence 3 778888 888888876 88999999999 665544 33333332 111111 1122234
Q ss_pred eEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCcee-EecCCCCHHHHHHHHHHHhcCCCcE
Q 005313 394 TQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAA-AIHGDKSQSERDYVLNQFRAGRSPV 471 (703)
Q Consensus 394 ~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~-~lhg~~~~~eR~~vl~~F~~G~~~I 471 (703)
.+.+... .+...|..+++.. +.++||||++++.|+.+++.|.+ .+.+. .+|++ +|+ ++.|++|+++|
T Consensus 232 ~~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~v 300 (414)
T 3oiy_A 232 THVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINI 300 (414)
T ss_dssp EEEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSE
T ss_pred hheeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeE
Confidence 4444333 4666777777773 37999999999999999999984 67887 88984 444 99999999999
Q ss_pred EEE----cccccccCCCCC-ccEEEEecCC--CCHHHHHHHHhccCCCC----CccEEEEEEecCChHHHHHHHHHHH
Q 005313 472 LVA----TDVAARGLDIKD-IRVVVNYDFP--TGVEDYVHRIGRTGRAG----ATGVAYTFFGDQDSRYASDLIKLLE 538 (703)
Q Consensus 472 LVa----Tdv~~~GIDIp~-v~~VI~~d~P--~s~~~yiQriGRagR~G----~~g~~i~~~~~~d~~~~~~l~~~l~ 538 (703)
||| |+++++|||+|+ |++||+||+| .+...|+||+||+||.| +.|.+++|+ .+......+.+.+.
T Consensus 301 Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 301 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999 999999999999 9999999999 99999999999999988 479999988 66777777777776
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7e-45 Score=415.52 Aligned_cols=331 Identities=20% Similarity=0.242 Sum_probs=204.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
+..+|+|||.++|+.++.++++|+++|||+|||++|++|++..+..... ..++++|||+||++|+.||.+++++++..
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--cCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4468999999999999999999999999999999999999988876432 12468999999999999999999999887
Q ss_pred CCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc-cccCcccEEEecccccccCCChHHHH-HHHHH-c-
Q 005313 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQVSYLVLDEADRMLDMGFEPQIR-KIVKE-V- 348 (703)
Q Consensus 273 ~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~-~l~~~~~IViDEaH~ml~~gf~~~i~-~il~~-l- 348 (703)
.++.+..++|+......+..+..+++|+|+||++|.+++....+ .+.++++|||||||++.+++....+. .++.. +
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 78999999999877777777777799999999999999987777 78899999999999998876433321 22222 1
Q ss_pred --CCCceEEEEeccCcH-----------HHHHHHHHhhcCceecccccchhhhccccc-eEEEEEe--------------
Q 005313 349 --PARRQTLMYTATWPR-----------EVRKIAADLLVNPVQVNIGNVDELAANKAI-TQHIEVL-------------- 400 (703)
Q Consensus 349 --~~~~q~L~lSAT~p~-----------~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i-~~~~~~~-------------- 400 (703)
.+..++|+||||++. .+..+...+-...+.........+...... ...+...
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 456899999999842 222222222111111000000000000000 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 005313 401 -------------------------------------------------------------------------------- 400 (703)
Q Consensus 401 -------------------------------------------------------------------------------- 400 (703)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -----------------------------------------------ccchhHHHHHHHHHhc---CCCCeEEEEcCCHH
Q 005313 401 -----------------------------------------------APMDKHRRLEQILRSQ---EPGSKIIVFCSTKK 430 (703)
Q Consensus 401 -----------------------------------------------~~~~k~~~L~~ll~~~---~~~~kvLVF~~s~~ 430 (703)
....|...|..++... ..+.++||||++++
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 0133555566666543 56789999999999
Q ss_pred HHHHHHHHHhcC-------------CceeEecCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCccEEEEecCC
Q 005313 431 MCDQLARNLTRQ-------------FGAAAIHGDKSQSERDYVLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYDFP 496 (703)
Q Consensus 431 ~a~~la~~L~~~-------------~~~~~lhg~~~~~eR~~vl~~F~~-G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P 496 (703)
.++.+++.|.+. .....+|+++++++|..+++.|++ |+++|||||+++++|||+|+|++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999753 234566888999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 497 TGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 497 ~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
+++..|+||+|| ||. +.|.+++|+...+.
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999 999 88999999876543
No 20
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.4e-44 Score=408.24 Aligned_cols=332 Identities=22% Similarity=0.266 Sum_probs=230.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
.+|+|||.++++.++.++++|+++|||+|||++|++|++..+..... ..++++|||+||++|+.||.+++++++...+
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--GQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--CCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 37999999999999999999999999999999999999988876432 1246899999999999999999999988888
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc-cccCcccEEEecccccccCCC-hHHHHHHHHHc----
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQVSYLVLDEADRMLDMGF-EPQIRKIVKEV---- 348 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~-~l~~~~~IViDEaH~ml~~gf-~~~i~~il~~l---- 348 (703)
+.+..++|+......+..+..+++|+|+||++|.+++....+ .+.++++|||||||++.+.+. ...+..++...
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSC
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccc
Confidence 999999999877777677777799999999999999987766 788999999999999987752 22222333322
Q ss_pred -CCCceEEEEeccCcHH-----------HHHHHHHhhcCceecccccchhhhccccce-EEEEE----------------
Q 005313 349 -PARRQTLMYTATWPRE-----------VRKIAADLLVNPVQVNIGNVDELAANKAIT-QHIEV---------------- 399 (703)
Q Consensus 349 -~~~~q~L~lSAT~p~~-----------v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~-~~~~~---------------- 399 (703)
.+..++|+||||++.. +..+...+-...+.........+....... ..+..
T Consensus 161 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240 (555)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHH
Confidence 2557999999998531 112222111011110000000000000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 005313 400 -------------------------------------------------------------------------------- 399 (703)
Q Consensus 400 -------------------------------------------------------------------------------- 399 (703)
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (555)
T 3tbk_A 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDA 320 (555)
T ss_dssp HHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence
Q ss_pred ----------------------------------------------eccchhHHHHHHHHHhc---CCCCeEEEEcCCHH
Q 005313 400 ----------------------------------------------LAPMDKHRRLEQILRSQ---EPGSKIIVFCSTKK 430 (703)
Q Consensus 400 ----------------------------------------------~~~~~k~~~L~~ll~~~---~~~~kvLVF~~s~~ 430 (703)
.....|...|..++... ....++||||++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 400 (555)
T 3tbk_A 321 QMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRA 400 (555)
T ss_dssp CHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH
Confidence 00133555566666543 45689999999999
Q ss_pred HHHHHHHHHhcC-----C--------ceeEecCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCccEEEEecCC
Q 005313 431 MCDQLARNLTRQ-----F--------GAAAIHGDKSQSERDYVLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYDFP 496 (703)
Q Consensus 431 ~a~~la~~L~~~-----~--------~~~~lhg~~~~~eR~~vl~~F~~-G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P 496 (703)
+++.+++.|.+. + ....+|+++++++|..+++.|++ |+++|||||+++++|||+|+|++||+||+|
T Consensus 401 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p 480 (555)
T 3tbk_A 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYV 480 (555)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCC
T ss_pred HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCC
Confidence 999999999753 2 34455669999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCCccEEEEEEecCChHHH
Q 005313 497 TGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYA 530 (703)
Q Consensus 497 ~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~ 530 (703)
+|+..|+||+|| ||. +.|.+++|+.+.+....
T Consensus 481 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 481 GNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp SSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred CCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 999999999999 999 88999999987655433
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-42 Score=410.38 Aligned_cols=338 Identities=21% Similarity=0.289 Sum_probs=262.4
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 005313 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 251 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~-il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLI 251 (703)
..+|++++|++.+.+.+...||..|+++|.++++. +++++++|+++|||+|||+++.++++..+... +.++||
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------~~~il~ 80 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------GGKAIY 80 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CSEEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------CCeEEE
Confidence 36799999999999999999999999999999999 78899999999999999999999999877631 459999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccc
Q 005313 252 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ 331 (703)
++|+++|+.|+++.++++. ..++.+..++|+....... + ..++|+|+||++|..++......+.++++|||||||+
T Consensus 81 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 81 VTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp ECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred EeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 9999999999999996553 3478888888887655432 2 2589999999999998887666688999999999999
Q ss_pred cccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhcc------ccceEEEEEec----
Q 005313 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN------KAITQHIEVLA---- 401 (703)
Q Consensus 332 ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~------~~i~~~~~~~~---- 401 (703)
+.+..+...+..++..++ ..|+|+||||+++ ..++.. ++..+..........+... ......+....
T Consensus 157 l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTK 233 (715)
T ss_dssp GGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEE
T ss_pred cCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhh
Confidence 988888888888888776 7899999999975 234433 4432211100000000000 00000111111
Q ss_pred ----cchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcC-----------------------------------
Q 005313 402 ----PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ----------------------------------- 442 (703)
Q Consensus 402 ----~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~----------------------------------- 442 (703)
...+...+.++ ...+.++||||+++++++.+++.|.+.
T Consensus 234 ~~~~~~~~~~~~~~~---~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 234 KVHGDDAIIAYTLDS---LSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEESSSHHHHHHHHH---HTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hcccchHHHHHHHHH---HhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 12233333333 346689999999999999999998742
Q ss_pred --CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----ec-------CCCCHHHHHHHHhcc
Q 005313 443 --FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YD-------FPTGVEDYVHRIGRT 509 (703)
Q Consensus 443 --~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~----~d-------~P~s~~~yiQriGRa 509 (703)
+++..+|++++.++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 25889999999999999999999999999999999999999999999999 99 899999999999999
Q ss_pred CCCC--CccEEEEEEecCC
Q 005313 510 GRAG--ATGVAYTFFGDQD 526 (703)
Q Consensus 510 gR~G--~~g~~i~~~~~~d 526 (703)
||.| ..|.|++++.+.+
T Consensus 391 GR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CCTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCCceEEEEeCCch
Confidence 9998 4789999987655
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.4e-43 Score=414.32 Aligned_cols=336 Identities=19% Similarity=0.224 Sum_probs=267.1
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 175 sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~-il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
+|++++|++.+.+.+...||..|+++|.++++. ++.++++|+++|||+|||++|.++++..+... +.++||++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------~~~~l~i~ 75 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ------GGKAVYIV 75 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH------CSEEEEEC
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC------CCEEEEEc
Confidence 588899999999999999999999999999998 88999999999999999999999999877631 45999999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccc
Q 005313 254 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml 333 (703)
|+++|+.|+++.++++.. .++.+..++|+....... ...++|+|+||++|..++......+.++++|||||+|++.
T Consensus 76 P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 76 PLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp SSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGG
T ss_pred CcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccC
Confidence 999999999999976543 478888888876554332 2358999999999999888766668899999999999999
Q ss_pred cCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCce-ecccccchhhhccccceEEEEEec-----cchhHH
Q 005313 334 DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPV-QVNIGNVDELAANKAITQHIEVLA-----PMDKHR 407 (703)
Q Consensus 334 ~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~-~i~i~~~~~~~~~~~i~~~~~~~~-----~~~k~~ 407 (703)
++.+...+..++..++...|+|+||||+++ ..++.. ++.... ...... ..+.........+.... ...+..
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~rp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T 2zj8_A 152 SRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAELIVSDWRP-VKLRRGVFYQGFVTWEDGSIDRFSSWEE 228 (720)
T ss_dssp CTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEEEEECCCCS-SEEEEEEEETTEEEETTSCEEECSSTTH
T ss_pred CCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCcccCCCCCC-CcceEEEEeCCeeeccccchhhhhHHHH
Confidence 888999999999988778999999999975 334433 433211 111000 00000000000111111 123334
Q ss_pred HHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcC----------------------------------CceeEecCCCC
Q 005313 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ----------------------------------FGAAAIHGDKS 453 (703)
Q Consensus 408 ~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~----------------------------------~~~~~lhg~~~ 453 (703)
.+.+++. .+.++||||++++.|+.++..|.+. .++..+|++++
T Consensus 229 ~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~ 305 (720)
T 2zj8_A 229 LVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG 305 (720)
T ss_dssp HHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC
Confidence 4444443 4579999999999999999888642 24889999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----ec----CCCCHHHHHHHHhccCCCC--CccEEEEEEe
Q 005313 454 QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YD----FPTGVEDYVHRIGRTGRAG--ATGVAYTFFG 523 (703)
Q Consensus 454 ~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~----~d----~P~s~~~yiQriGRagR~G--~~g~~i~~~~ 523 (703)
+++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.| ..|.|++++.
T Consensus 306 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 306 RDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEec
Confidence 999999999999999999999999999999999999998 77 5889999999999999998 4788999988
Q ss_pred cCC
Q 005313 524 DQD 526 (703)
Q Consensus 524 ~~d 526 (703)
+.+
T Consensus 386 ~~~ 388 (720)
T 2zj8_A 386 SDD 388 (720)
T ss_dssp SSC
T ss_pred Ccc
Confidence 776
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.9e-43 Score=412.23 Aligned_cols=339 Identities=20% Similarity=0.250 Sum_probs=222.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005313 186 LREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDE 265 (703)
Q Consensus 186 ~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~ 265 (703)
..++...||..|++||.++|+.++.++++|+++|||+|||++|+++++..+..... ..+.++|||+||++|+.||.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--TCCCCEEEECSSHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--CCCCeEEEEECCHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999988765322 1235899999999999999999
Q ss_pred HHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc-cccCcccEEEecccccccCCC-hHHHHH
Q 005313 266 AVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQVSYLVLDEADRMLDMGF-EPQIRK 343 (703)
Q Consensus 266 ~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~-~l~~~~~IViDEaH~ml~~gf-~~~i~~ 343 (703)
+++++...++.+..++|+......+..+...++|+|+||++|.+.+....+ .+.++++|||||||++.+... ...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999998888999999999877777777777799999999999999987766 688999999999999876541 122222
Q ss_pred HHHH-----cCCCceEEEEeccCc-------HHHHHHHHHh---------------------------------------
Q 005313 344 IVKE-----VPARRQTLMYTATWP-------REVRKIAADL--------------------------------------- 372 (703)
Q Consensus 344 il~~-----l~~~~q~L~lSAT~p-------~~v~~l~~~~--------------------------------------- 372 (703)
.+.. ..+..++|+||||+. .+..+.+..+
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2222 246789999999986 2222211111
Q ss_pred --------------------hcCceecccccchh------------hh--------------------------------
Q 005313 373 --------------------LVNPVQVNIGNVDE------------LA-------------------------------- 388 (703)
Q Consensus 373 --------------------l~~~~~i~i~~~~~------------~~-------------------------------- 388 (703)
+.++..+....... ..
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence 11100000000000 00
Q ss_pred ----------------------------ccccceEEEEE----------------eccchhHHHHHHHHHhc---CCCCe
Q 005313 389 ----------------------------ANKAITQHIEV----------------LAPMDKHRRLEQILRSQ---EPGSK 421 (703)
Q Consensus 389 ----------------------------~~~~i~~~~~~----------------~~~~~k~~~L~~ll~~~---~~~~k 421 (703)
....+.+.+.. .....|...|..++... ..+.+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 00000000000 01345666777777655 35679
Q ss_pred EEEEcCCHHHHHHHHHHHhcC-----CceeEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCc
Q 005313 422 IIVFCSTKKMCDQLARNLTRQ-----FGAAAI--------HGDKSQSERDYVLNQFRA-GRSPVLVATDVAARGLDIKDI 487 (703)
Q Consensus 422 vLVF~~s~~~a~~la~~L~~~-----~~~~~l--------hg~~~~~eR~~vl~~F~~-G~~~ILVaTdv~~~GIDIp~v 487 (703)
+||||++++.++.+++.|.+. +.+..+ |+++++++|..+++.|++ |+++|||||+++++|||||+|
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 999999999999999999854 777777 569999999999999998 999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChH
Q 005313 488 RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSR 528 (703)
Q Consensus 488 ~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~ 528 (703)
++||+||+|++++.|+||+|| ||. +.|.+++|+...+..
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVI 519 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHH
Confidence 999999999999999999999 998 789999988766543
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.4e-43 Score=413.27 Aligned_cols=336 Identities=23% Similarity=0.275 Sum_probs=261.6
Q ss_pred CCcCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEE
Q 005313 175 SFDATG--FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252 (703)
Q Consensus 175 sf~~~~--l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl 252 (703)
+|++++ |++.+.+.+.+.||.+|+++|.++++.+++++++|+++|||+|||+++.++++..+.. +.++||+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~l~i 74 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-------GGKSLYV 74 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------TCCEEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------CCcEEEE
Confidence 577777 9999999999999999999999999999999999999999999999999999987654 3589999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 253 ~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
+|+++|+.|+++.++++. ..++.+..++|+...... ....++|+|+||++|..++......+.++++|||||||++
T Consensus 75 ~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 75 VPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp ESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGG
T ss_pred eCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeec
Confidence 999999999999996553 457888888887755432 1235899999999999988876666889999999999999
Q ss_pred ccCCChHHHHHHHHHc---CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEecc-------
Q 005313 333 LDMGFEPQIRKIVKEV---PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP------- 402 (703)
Q Consensus 333 l~~gf~~~i~~il~~l---~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~------- 402 (703)
.++++...+..++..+ .+..|+|+||||+++ ..++.. ++..+....-.....+.........+.....
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhh
Confidence 9888888888776665 578999999999985 344443 4433221110000000000000000111111
Q ss_pred chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcC-------------------------------CceeEecCC
Q 005313 403 MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-------------------------------FGAAAIHGD 451 (703)
Q Consensus 403 ~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~-------------------------------~~~~~lhg~ 451 (703)
..+...+.+.+. +++++||||+++++++.+++.|.+. +++..+|++
T Consensus 229 ~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 229 VKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp CCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 113444444443 5679999999999999999888642 358899999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----ec---CCCCHHHHHHHHhccCCCC--CccEEEEEE
Q 005313 452 KSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YD---FPTGVEDYVHRIGRTGRAG--ATGVAYTFF 522 (703)
Q Consensus 452 ~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~----~d---~P~s~~~yiQriGRagR~G--~~g~~i~~~ 522 (703)
+++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.| ..|.|++++
T Consensus 306 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 385 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999 76 6889999999999999998 478999998
Q ss_pred ecCC
Q 005313 523 GDQD 526 (703)
Q Consensus 523 ~~~d 526 (703)
.+.+
T Consensus 386 ~~~~ 389 (702)
T 2p6r_A 386 GKRD 389 (702)
T ss_dssp CGGG
T ss_pred cCcc
Confidence 7765
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.7e-43 Score=417.09 Aligned_cols=333 Identities=20% Similarity=0.244 Sum_probs=210.8
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 191 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 191 ~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
..++..|+|||.++|+.++.++++|+++|||+|||++|++|++..+..... ..++++|||+|+++|+.||.+++++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--cCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 347889999999999999999999999999999999999999988876422 124689999999999999999999998
Q ss_pred CCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc-cccCcccEEEecccccccCCChHHH-HHHHHH-
Q 005313 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQVSYLVLDEADRMLDMGFEPQI-RKIVKE- 347 (703)
Q Consensus 271 ~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~-~l~~~~~IViDEaH~ml~~gf~~~i-~~il~~- 347 (703)
...++.+..++|+......+..+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+......+ ..++..
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8778999999999987777777777899999999999999987766 7889999999999999876532222 222222
Q ss_pred ---cCCCceEEEEeccCcH-----------HHHHHHHHhhcCceecccccchhhh---ccccceEE-EE-----------
Q 005313 348 ---VPARRQTLMYTATWPR-----------EVRKIAADLLVNPVQVNIGNVDELA---ANKAITQH-IE----------- 398 (703)
Q Consensus 348 ---l~~~~q~L~lSAT~p~-----------~v~~l~~~~l~~~~~i~i~~~~~~~---~~~~i~~~-~~----------- 398 (703)
..+..++|+||||+.. .+..+...+-...+.........+. ........ +.
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 1556899999999852 2222222211111110000000000 00000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 005313 399 -------------------------------------------------------------------------------- 398 (703)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (703)
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence
Q ss_pred -----------------------------------------------EeccchhHHHHHHHHHhc---CCCCeEEEEcCC
Q 005313 399 -----------------------------------------------VLAPMDKHRRLEQILRSQ---EPGSKIIVFCST 428 (703)
Q Consensus 399 -----------------------------------------------~~~~~~k~~~L~~ll~~~---~~~~kvLVF~~s 428 (703)
......|...|..+|... ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 000123455556666542 556899999999
Q ss_pred HHHHHHHHHHHhcC-------------CceeEecCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCccEEEEec
Q 005313 429 KKMCDQLARNLTRQ-------------FGAAAIHGDKSQSERDYVLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYD 494 (703)
Q Consensus 429 ~~~a~~la~~L~~~-------------~~~~~lhg~~~~~eR~~vl~~F~~-G~~~ILVaTdv~~~GIDIp~v~~VI~~d 494 (703)
++.++.+++.|.+. ..+..+|+++++.+|..+++.|++ |+++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999752 345667899999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 495 FPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 495 ~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
+|+|+..|+||+|| ||. +.|.|++|+...+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999 999 88999999976543
No 26
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-42 Score=424.04 Aligned_cols=328 Identities=18% Similarity=0.229 Sum_probs=257.5
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 175 sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
.|...++++.+...+....+..|+++|+++|+.++.++++|++|+||+|||++|++|++..+.. +.++||++|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-------g~rvlvl~P 235 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------KQRVIYTSP 235 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-------TCEEEEEES
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-------CCeEEEEcC
Confidence 4555666666666666667779999999999999999999999999999999999999988754 569999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccccc
Q 005313 255 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 334 (703)
Q Consensus 255 treLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~ 334 (703)
|++|+.|+++.+.+++. .+..++|+.... ..++|+|+||++|.+++......+.++++|||||||+|.+
T Consensus 236 traLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp SHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred cHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 99999999999999875 455577766432 3489999999999999988777788999999999999999
Q ss_pred CCChHHHHHHHHHcCCCceEEEEeccCcHH--HHHHHHHhhcCceecccccchhhhccccceEEEE---------Eecc-
Q 005313 335 MGFEPQIRKIVKEVPARRQTLMYTATWPRE--VRKIAADLLVNPVQVNIGNVDELAANKAITQHIE---------VLAP- 402 (703)
Q Consensus 335 ~gf~~~i~~il~~l~~~~q~L~lSAT~p~~--v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~---------~~~~- 402 (703)
++|...+..++..+++..|+|+||||+++. +..++..++..+..+......... +..++. .+..
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p----l~~~~~~~~~~~~~~~vd~~ 380 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP----LQHYLFPAHGDGIYLVVDEK 380 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC----EEEEEEETTSSCCEEEEETT
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc----ceEEEeecCCcceeeeeccc
Confidence 999999999999999999999999999764 446666655554443322111110 111110 0000
Q ss_pred ---------------------------------------------chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHH
Q 005313 403 ---------------------------------------------MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLAR 437 (703)
Q Consensus 403 ---------------------------------------------~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~ 437 (703)
..+...+...+.. ....++||||++++.|+.++.
T Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~la~ 459 (1108)
T 3l9o_A 381 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELAL 459 (1108)
T ss_dssp TEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHHHHH
Confidence 1111222223322 235699999999999999999
Q ss_pred HHhcC----------------------------------------CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 005313 438 NLTRQ----------------------------------------FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV 477 (703)
Q Consensus 438 ~L~~~----------------------------------------~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv 477 (703)
.|... .++.++|++|++.+|+.+++.|++|.++|||||++
T Consensus 460 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~v 539 (1108)
T 3l9o_A 460 KMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATET 539 (1108)
T ss_dssp HTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcH
Confidence 88530 12789999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEecCC--------CCHHHHHHHHhccCCCC--CccEEEEEEecC
Q 005313 478 AARGLDIKDIRVVVNYDFP--------TGVEDYVHRIGRTGRAG--ATGVAYTFFGDQ 525 (703)
Q Consensus 478 ~~~GIDIp~v~~VI~~d~P--------~s~~~yiQriGRagR~G--~~g~~i~~~~~~ 525 (703)
+++|||+|++++||+++.| .++.+|+||+||+||.| ..|.|++++.+.
T Consensus 540 la~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 540 FSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999977653 37778999999999999 678888888765
No 27
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.8e-41 Score=374.62 Aligned_cols=323 Identities=25% Similarity=0.321 Sum_probs=248.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
+|+|||.++++.++.+ ++|++++||+|||++++++++..+.. .+.++|||+|+++|+.||.+++.++......
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK------YGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH------SCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 7999999999999999 99999999999999999998887752 2458999999999999999999999765556
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEE
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L 355 (703)
.+..++|+...... ..+...++|+|+||++|.+.+....+.+.++++|||||||++.+......+...+....+..++|
T Consensus 82 ~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 82 KIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp GEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred heEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 78888887654432 22333589999999999998887778889999999999999987655555556666667788999
Q ss_pred EEeccCcH---HHHHHHHHhhcCceecccccchhhh---ccccceEEE--------------------------------
Q 005313 356 MYTATWPR---EVRKIAADLLVNPVQVNIGNVDELA---ANKAITQHI-------------------------------- 397 (703)
Q Consensus 356 ~lSAT~p~---~v~~l~~~~l~~~~~i~i~~~~~~~---~~~~i~~~~-------------------------------- 397 (703)
+||||+.. .+.+++..+......+......... .........
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999963 3334443332111111000000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 005313 398 -------------------------------------------------------------------------------- 397 (703)
Q Consensus 398 -------------------------------------------------------------------------------- 397 (703)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence
Q ss_pred ----------------EEeccchhHHHHHHHHHhc---CCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecC-------
Q 005313 398 ----------------EVLAPMDKHRRLEQILRSQ---EPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHG------- 450 (703)
Q Consensus 398 ----------------~~~~~~~k~~~L~~ll~~~---~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg------- 450 (703)
.......|...|.+++... ..+.++||||++++.++.+++.|.+ .+.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~ 400 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 400 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC---
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccccc
Confidence 0002234556666677654 4678999999999999999999985 688999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 451 -DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 451 -~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
+++..+|..+++.|++|+++|||||+++++|||+|++++||++|+|+++..|+||+||++|.|+ |.++.|+.+.+.
T Consensus 401 ~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 401 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp ----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred ccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999987753
No 28
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.7e-42 Score=400.72 Aligned_cols=323 Identities=20% Similarity=0.250 Sum_probs=252.9
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 191 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 191 ~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
..|| .||++|..+++.+++|+ |+.++||+|||++|++|++..... ++.++||+||++||.|..+++..+.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-------g~~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-------GKGVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 4699 99999999999999999 899999999999999999854332 4579999999999999999999999
Q ss_pred CCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhc------cccccCcccEEEecccccc-cCC------
Q 005313 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRML-DMG------ 336 (703)
Q Consensus 271 ~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~------~~~l~~~~~IViDEaH~ml-~~g------ 336 (703)
..+++.+.+++|+... +.+....+++|+|+||++| .+++..+ .+.+..+.++||||||+|| |++
T Consensus 149 ~~lgl~v~~i~gg~~~--~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIi 226 (844)
T 1tf5_A 149 EFLGLTVGLNLNSMSK--DEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 226 (844)
T ss_dssp HHTTCCEEECCTTSCH--HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred hhcCCeEEEEeCCCCH--HHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhh
Confidence 9999999999999754 3344445699999999999 7777643 3557889999999999998 765
Q ss_pred ---------ChHHHHHHHHHcC---------CCceEE-----------------EEeccCcH---HHHHHH--HHhhcC-
Q 005313 337 ---------FEPQIRKIVKEVP---------ARRQTL-----------------MYTATWPR---EVRKIA--ADLLVN- 375 (703)
Q Consensus 337 ---------f~~~i~~il~~l~---------~~~q~L-----------------~lSAT~p~---~v~~l~--~~~l~~- 375 (703)
|...+..|+..++ +.+|++ +||||++. .+...+ ..++..
T Consensus 227 sg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d 306 (844)
T 1tf5_A 227 SGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKD 306 (844)
T ss_dssp EEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBT
T ss_pred cCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcC
Confidence 5678899999987 478887 89999764 333322 222211
Q ss_pred --ce----------------------------------ecccccchh---------------------------------
Q 005313 376 --PV----------------------------------QVNIGNVDE--------------------------------- 386 (703)
Q Consensus 376 --~~----------------------------------~i~i~~~~~--------------------------------- 386 (703)
++ .+.+.....
T Consensus 307 ~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~ 386 (844)
T 1tf5_A 307 VDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRN 386 (844)
T ss_dssp TTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred CceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHH
Confidence 11 000000000
Q ss_pred --------hhccccc----eEEEEEeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCC
Q 005313 387 --------LAANKAI----TQHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDK 452 (703)
Q Consensus 387 --------~~~~~~i----~~~~~~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~ 452 (703)
++.+..+ ...+......+|...|...+... ..+.++||||+|++.++.|+..|. .++++.+||+++
T Consensus 387 iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~ 466 (844)
T 1tf5_A 387 IYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN 466 (844)
T ss_dssp HHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC
T ss_pred HhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 0000000 00123345567777777777643 456789999999999999999998 479999999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcccccccCCCC--------CccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEec
Q 005313 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIK--------DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGD 524 (703)
Q Consensus 453 ~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp--------~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~ 524 (703)
.+.+|..+.++|+.| .|+|||++++||+||+ ++.+||+|++|.+.+.|+||+||+||+|.+|.+++|++.
T Consensus 467 ~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~ 544 (844)
T 1tf5_A 467 HEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSM 544 (844)
T ss_dssp HHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEET
T ss_pred cHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecH
Confidence 888888777777665 6999999999999999 788999999999999999999999999999999999987
Q ss_pred CCh
Q 005313 525 QDS 527 (703)
Q Consensus 525 ~d~ 527 (703)
.|.
T Consensus 545 eD~ 547 (844)
T 1tf5_A 545 EDE 547 (844)
T ss_dssp TSS
T ss_pred HHH
Confidence 653
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.8e-42 Score=416.21 Aligned_cols=319 Identities=21% Similarity=0.307 Sum_probs=257.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 192 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 192 ~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
.+| +|+++|+++|+.+++++|+|++||||+|||++|+++++..+.. ++++|||+||++|+.|+.+.+++++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------~~~~Lil~PtreLa~Q~~~~l~~l~- 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------GKKSALVFPTVTLVKQTLERLQKLA- 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-------TCCEEEEESSHHHHHHHHHHHHTTS-
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------CCeEEEEechHHHHHHHHHHHHHhh-
Confidence 577 7999999999999999999999999999999888887776632 5689999999999999999999987
Q ss_pred CCCceEEEeeCCCCC---CchhhhhcCC-CcEEEECHHHHHHHHHhccccccCcccEEEecccccc----------c-CC
Q 005313 272 SSRISCTCLYGGAPK---GPQLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML----------D-MG 336 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~---~~~~~~l~~g-~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml----------~-~g 336 (703)
..++.+.+++|+... ..++..+..+ ++|+|+||++|.+++.. +.+.++++|||||||++. + ++
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 778899999999887 5566677776 99999999999888774 667899999999997654 4 88
Q ss_pred ChHH-HHHHHHHcC-----------CCceEEEEecc-CcHHHHH-HHHHhhcCceecccccchhhhccccceEEEEEecc
Q 005313 337 FEPQ-IRKIVKEVP-----------ARRQTLMYTAT-WPREVRK-IAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP 402 (703)
Q Consensus 337 f~~~-i~~il~~l~-----------~~~q~L~lSAT-~p~~v~~-l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~ 402 (703)
|... +..++..++ ...|+|+|||| +|..+.. ++..++. +.+... ......+.+.+..+
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~--~~~~~~i~~~~~~~-- 295 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL--VSVARNITHVRISS-- 295 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBC--CCCCCCEEEEEESC--
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccC--CCCcCCceeEEEec--
Confidence 8888 889998887 88999999999 6655542 3333332 222211 11223344444333
Q ss_pred chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCcee-EecCCCCHHHHHHHHHHHhcCCCcEEEE----cc
Q 005313 403 MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAA-AIHGDKSQSERDYVLNQFRAGRSPVLVA----TD 476 (703)
Q Consensus 403 ~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~-~lhg~~~~~eR~~vl~~F~~G~~~ILVa----Td 476 (703)
++...|..+++.. +.++||||++++.++.++..|.+ .+.+. .+|+ +|++ ++.|++|+++|||| |+
T Consensus 296 -~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 -RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp -CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred -CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 5667777777774 37999999999999999999974 67887 8998 2555 99999999999999 99
Q ss_pred cccccCCCCC-ccEEEEecCCC----------------------------------------------------------
Q 005313 477 VAARGLDIKD-IRVVVNYDFPT---------------------------------------------------------- 497 (703)
Q Consensus 477 v~~~GIDIp~-v~~VI~~d~P~---------------------------------------------------------- 497 (703)
++++|||+|+ |++|||||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------CHHHHHHHHhccCCCCCcc--EEEEEEecCChHHHHHHHHHHH
Q 005313 498 --------------GVEDYVHRIGRTGRAGATG--VAYTFFGDQDSRYASDLIKLLE 538 (703)
Q Consensus 498 --------------s~~~yiQriGRagR~G~~g--~~i~~~~~~d~~~~~~l~~~l~ 538 (703)
+...|+||+|||||.+..| .++.++...|.+.++.|.+.+.
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999999976432 3444444578888888887775
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-41 Score=411.46 Aligned_cols=333 Identities=20% Similarity=0.237 Sum_probs=209.1
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 190 HNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 190 ~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
...++..|++||.++|+.++.++++|++++||+|||++|++|++..+..... ..+.++|||+||++|+.||.++++++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3346889999999999999999999999999999999999998887765321 12468999999999999999999999
Q ss_pred cCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc-cccCcccEEEecccccccCCChH-HHHHHHHH
Q 005313 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQVSYLVLDEADRMLDMGFEP-QIRKIVKE 347 (703)
Q Consensus 270 ~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~-~l~~~~~IViDEaH~ml~~gf~~-~i~~il~~ 347 (703)
+...++.+..++|+.....+...+...++|+|+||++|.+.+....+ .+.++++|||||||++...+... .+..++..
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88788999999999877766666666789999999999999987666 68889999999999998765322 22222222
Q ss_pred ----cCCCceEEEEeccCcH-----------HHHHHHHHhhcCceecccccchhhhcccc-ceEEEEEe-----------
Q 005313 348 ----VPARRQTLMYTATWPR-----------EVRKIAADLLVNPVQVNIGNVDELAANKA-ITQHIEVL----------- 400 (703)
Q Consensus 348 ----l~~~~q~L~lSAT~p~-----------~v~~l~~~~l~~~~~i~i~~~~~~~~~~~-i~~~~~~~----------- 400 (703)
..+..++|+||||+.. .+..+...+-...+.........+..... ....+..+
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 1456899999999842 22222221111100000000000000000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 005313 401 -------------------------------------------------------------------------------- 400 (703)
Q Consensus 401 -------------------------------------------------------------------------------- 400 (703)
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred --------------------------------------------------ccchhHHHHHHHHHhc---CCCCeEEEEcC
Q 005313 401 --------------------------------------------------APMDKHRRLEQILRSQ---EPGSKIIVFCS 427 (703)
Q Consensus 401 --------------------------------------------------~~~~k~~~L~~ll~~~---~~~~kvLVF~~ 427 (703)
....|...|..+|... ..+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0123455566666653 45689999999
Q ss_pred CHHHHHHHHHHHhcC-------------CceeEecCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCccEEEEe
Q 005313 428 TKKMCDQLARNLTRQ-------------FGAAAIHGDKSQSERDYVLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNY 493 (703)
Q Consensus 428 s~~~a~~la~~L~~~-------------~~~~~lhg~~~~~eR~~vl~~F~~-G~~~ILVaTdv~~~GIDIp~v~~VI~~ 493 (703)
+++.++.+++.|.+. ..+..+|+++++.+|..+++.|++ |+++|||||+++++|||||+|++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999853 234567899999999999999999 999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhccCCCCCccEEEEEEecCC
Q 005313 494 DFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 526 (703)
Q Consensus 494 d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d 526 (703)
|+|+|+..|+||+|| ||. +.|.+++|+...+
T Consensus 720 D~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp SCCSCSHHHHCC---------CCCEEEEESCHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 999999999999999 999 7889999986643
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=402.67 Aligned_cols=310 Identities=19% Similarity=0.262 Sum_probs=246.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 192 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 192 ~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
.+| .|+++|.++|+.+++++++|+++|||+|||++|+++++..+.. +.++||++|+++|+.|+++++.+++.
T Consensus 83 ~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-------g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 83 YPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------KQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-------CCeEEEECChHHHHHHHHHHHHHHhC
Confidence 355 5999999999999999999999999999999999998887753 46999999999999999999998765
Q ss_pred CCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCC
Q 005313 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 351 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~ 351 (703)
.+..++|+.... ..++|+|+||++|.+++......+.++++|||||||+|.++++...+..++..+++.
T Consensus 155 ----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 456677766432 247999999999999988777788999999999999999999999999999999999
Q ss_pred ceEEEEeccCcHHHH--HHHHHhhcCceecccccchhhhccccceEEEEE---------ecc------------------
Q 005313 352 RQTLMYTATWPREVR--KIAADLLVNPVQVNIGNVDELAANKAITQHIEV---------LAP------------------ 402 (703)
Q Consensus 352 ~q~L~lSAT~p~~v~--~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~---------~~~------------------ 402 (703)
.|+|+||||+++... .++......+..+....... ..+.+++.. +..
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS----SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc----ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 999999999986432 34443344444332221110 011111110 000
Q ss_pred ----------------------------chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-C-----------
Q 005313 403 ----------------------------MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-Q----------- 442 (703)
Q Consensus 403 ----------------------------~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~----------- 442 (703)
......+...+... ...++||||++++.|+.+++.|.. .
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 378 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 378 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 11112233333322 235899999999999999998864 1
Q ss_pred ----------------------------CceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE--
Q 005313 443 ----------------------------FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN-- 492 (703)
Q Consensus 443 ----------------------------~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~-- 492 (703)
.++..+||++++.+|+.+++.|++|.++|||||+++++|||+|++++||+
T Consensus 379 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~ 458 (1010)
T 2xgj_A 379 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 458 (1010)
T ss_dssp HHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCS
T ss_pred HHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCC
Confidence 13788999999999999999999999999999999999999999999999
Q ss_pred --ecC----CCCHHHHHHHHhccCCCCC--ccEEEEEEecC
Q 005313 493 --YDF----PTGVEDYVHRIGRTGRAGA--TGVAYTFFGDQ 525 (703)
Q Consensus 493 --~d~----P~s~~~yiQriGRagR~G~--~g~~i~~~~~~ 525 (703)
||. |.++.+|+||+||+||.|. .|.|++++.+.
T Consensus 459 ~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 459 RKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred cccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 999 8999999999999999996 49999999865
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=8.9e-42 Score=416.09 Aligned_cols=324 Identities=21% Similarity=0.296 Sum_probs=258.7
Q ss_pred HHHH-HCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005313 187 REVH-NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDE 265 (703)
Q Consensus 187 ~~l~-~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~ 265 (703)
+.+. ..||. | ++|.++|+.+++++|+|++||||+|||+ |++|++..+.. .++++|||+||++|+.|+.+.
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~------~~~~~lil~PtreLa~Q~~~~ 118 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL------KGKRCYVIFPTSLLVIQAAET 118 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT------TSCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh------cCCeEEEEeccHHHHHHHHHH
Confidence 3343 36898 9 9999999999999999999999999998 88888877654 256899999999999999999
Q ss_pred HHHhcCCCCc----eEEEeeCCCCCCc---hhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCCh
Q 005313 266 AVKFGKSSRI----SCTCLYGGAPKGP---QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 338 (703)
Q Consensus 266 ~~k~~~~~~i----~v~~~~gg~~~~~---~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~ 338 (703)
+++++...++ .+.+++|+..... +...+.. ++|+|+||++|.+++.. +.++++|||||||+|++ +.
T Consensus 119 l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~ 191 (1054)
T 1gku_B 119 IRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--AS 191 (1054)
T ss_dssp HHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--ST
T ss_pred HHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--cc
Confidence 9999988888 8999999987765 3444555 99999999999987664 66899999999999998 46
Q ss_pred HHHHHHHHHc-----------CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHH
Q 005313 339 PQIRKIVKEV-----------PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 407 (703)
Q Consensus 339 ~~i~~il~~l-----------~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 407 (703)
..+..++..+ +...|++++|||++.. ..++..++.++..+.+.... .....+.+.+. ...+..
T Consensus 192 ~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~--~~~~~i~~~~~---~~~k~~ 265 (1054)
T 1gku_B 192 KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR--ITVRNVEDVAV---NDESIS 265 (1054)
T ss_dssp HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE--ECCCCEEEEEE---SCCCTT
T ss_pred ccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc--cCcCCceEEEe---chhHHH
Confidence 7788887776 3567899999999876 54444444443333332211 11223333333 355666
Q ss_pred HHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEE----cccccccCC
Q 005313 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA----TDVAARGLD 483 (703)
Q Consensus 408 ~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVa----Tdv~~~GID 483 (703)
.|..+++.. +.++||||++++.|+.+++.|.+.+.+..+|+++ +.+++.|++|+++|||| |+++++|||
T Consensus 266 ~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGID 338 (1054)
T 1gku_B 266 TLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLD 338 (1054)
T ss_dssp TTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSC
T ss_pred HHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccc
Confidence 677777665 4689999999999999999998668999999998 37889999999999999 999999999
Q ss_pred CCCc-cEEEEecCC------------------------------------------------------------------
Q 005313 484 IKDI-RVVVNYDFP------------------------------------------------------------------ 496 (703)
Q Consensus 484 Ip~v-~~VI~~d~P------------------------------------------------------------------ 496 (703)
+|+| ++||++|+|
T Consensus 339 ip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 418 (1054)
T 1gku_B 339 LPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVRE 418 (1054)
T ss_dssp CTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEET
T ss_pred cCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEee
Confidence 9996 999999999
Q ss_pred -----CCHHHHHHHHhccCCCCCccE--EEEEEecCChHHHHHHHHHHHh
Q 005313 497 -----TGVEDYVHRIGRTGRAGATGV--AYTFFGDQDSRYASDLIKLLEG 539 (703)
Q Consensus 497 -----~s~~~yiQriGRagR~G~~g~--~i~~~~~~d~~~~~~l~~~l~~ 539 (703)
.+...|+||+||+||.|..|. +++|+...+......+.+.+..
T Consensus 419 ~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 419 GEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp TEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 799999999999999887764 8888888888888888887764
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=392.25 Aligned_cols=325 Identities=23% Similarity=0.305 Sum_probs=226.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHH-HHHHHHhcCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI-QDEAVKFGKSS 273 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~-~~~~~k~~~~~ 273 (703)
..|+++|.++++.+++++++|+++|||+|||++|++|++..+...... ..+.++|||+|+++|+.|| .+++++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-SEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-TCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-CCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 379999999999999999999999999999999999999887653221 1125899999999999999 9999998765
Q ss_pred CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHH------HhccccccCcccEEEecccccccCC-ChHHHHHHHH
Q 005313 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDIL------EMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVK 346 (703)
Q Consensus 274 ~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l------~~~~~~l~~~~~IViDEaH~ml~~g-f~~~i~~il~ 346 (703)
.+.+..++|+......+..+...++|+|+||++|.+.+ ....+.+..+++|||||||++.... +...+..++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 48888999998877777777778999999999999888 4455678899999999999986544 2233332222
Q ss_pred H----c---------CCCceEEEEeccCcHH-----------HHHHHHHhhcCceecccccchhhhccccce-EEEEEec
Q 005313 347 E----V---------PARRQTLMYTATWPRE-----------VRKIAADLLVNPVQVNIGNVDELAANKAIT-QHIEVLA 401 (703)
Q Consensus 347 ~----l---------~~~~q~L~lSAT~p~~-----------v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~-~~~~~~~ 401 (703)
. . .+..++|+||||+... +..+...+....+.........+....... ..+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 2 1 1567899999999751 222222221101111000000000000000 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 005313 402 -------------------------------------------------------------------------------- 401 (703)
Q Consensus 402 -------------------------------------------------------------------------------- 401 (703)
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------cchhHHHHHHHHHh----cCCCCeE
Q 005313 402 -------------------------------------------------------PMDKHRRLEQILRS----QEPGSKI 422 (703)
Q Consensus 402 -------------------------------------------------------~~~k~~~L~~ll~~----~~~~~kv 422 (703)
...|...|..+|.. ...+.++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 00111122223322 1226899
Q ss_pred EEEcCCHHHHHHHHHHHhc-------CCceeEecCC--------CCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 005313 423 IVFCSTKKMCDQLARNLTR-------QFGAAAIHGD--------KSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 487 (703)
Q Consensus 423 LVF~~s~~~a~~la~~L~~-------~~~~~~lhg~--------~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v 487 (703)
||||++++.++.+++.|.+ ++.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|+|
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v 483 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKEC 483 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSC
T ss_pred EEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccC
Confidence 9999999999999999986 4889999999 999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEec
Q 005313 488 RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGD 524 (703)
Q Consensus 488 ~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~ 524 (703)
++||+||+|+|+..|+||+||++|.| .+++++..
T Consensus 484 ~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 484 NIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 99999999999999999999976654 44444443
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-40 Score=391.73 Aligned_cols=346 Identities=20% Similarity=0.254 Sum_probs=257.7
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHH
Q 005313 184 ELLREVHNAGFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE 257 (703)
Q Consensus 184 ~l~~~l~~~g~~~p~piQ~~ai~~il~g------rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Ptre 257 (703)
.+.+.+...+| .||++|+++|+.++++ .++|++++||+|||++|+++++..+.. +.++|||+||++
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-------g~qvlvlaPtr~ 428 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-------GFQTAFMVPTSI 428 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-------TSCEEEECSCHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCcHH
Confidence 34444567788 9999999999999875 589999999999999999999988765 468999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEeeCCCCCCc---hhhhhcCC-CcEEEECHHHHHHHHHhccccccCcccEEEecccccc
Q 005313 258 LATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 333 (703)
Q Consensus 258 La~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~---~~~~l~~g-~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml 333 (703)
|+.|+++.++++....++.+.+++|+..... .+..+..+ ++|+|+||+.|.+ .+.+.++++|||||+|++.
T Consensus 429 La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhh
Confidence 9999999999999888899999999876543 33445554 9999999988744 5668899999999999963
Q ss_pred cCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhc-cccceEEEEEeccchhHHHHHHH
Q 005313 334 DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA-NKAITQHIEVLAPMDKHRRLEQI 412 (703)
Q Consensus 334 ~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~-~~~i~~~~~~~~~~~k~~~L~~l 412 (703)
... ...+.......++|+||||+.+....+. ++.+.....+ ++... ...+. ...+........+..+
T Consensus 504 ~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i---~~~p~~r~~i~--~~~~~~~~~~~l~~~i 571 (780)
T 1gm5_A 504 VKQ-----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVI---DEMPPGRKEVQ--TMLVPMDRVNEVYEFV 571 (780)
T ss_dssp ---------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEE---CCCCSSCCCCE--ECCCCSSTHHHHHHHH
T ss_pred HHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeee---eccCCCCcceE--EEEeccchHHHHHHHH
Confidence 221 1222233456899999999865544332 2222111111 11111 11111 1122222223333334
Q ss_pred HHhcCCCCeEEEEcCCHH--------HHHHHHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 005313 413 LRSQEPGSKIIVFCSTKK--------MCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAAR 480 (703)
Q Consensus 413 l~~~~~~~kvLVF~~s~~--------~a~~la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~ 480 (703)
.+....+.+++|||++.+ .++.+++.|.+ .+.+..+||+|++++|+.+++.|++|+++|||||+++++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 445567789999999654 47788888876 457899999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEecCCC-CHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHHHHHHHcC
Q 005313 481 GLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRG 555 (703)
Q Consensus 481 GIDIp~v~~VI~~d~P~-s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L~~la~r~ 555 (703)
|||+|++++||+++.|. +...|.||+||+||.|++|.|++++.+. .....+.++.+....+.+.....++..|+
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~-~~~~~~rl~~l~~~~dgf~iae~dL~~Rg 726 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV-GEEAMERLRFFTLNTDGFKIAEYDLKTRG 726 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC-CHHHHHHHHHHHTCCCSHHHHHHHHHSSC
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC-ChHHHHHHHHHHhhhccchhhHhhHhccC
Confidence 99999999999999985 7899999999999999999999998743 34455566777777777766667777664
No 35
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.1e-40 Score=382.37 Aligned_cols=318 Identities=19% Similarity=0.237 Sum_probs=228.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..|+++|..+++.+++|+ |+.++||+|||++|++|++..... ++.++||+||++||.|+.+++.++...++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-------g~~vlVltPTreLA~Q~~e~~~~l~~~lg 143 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-------GKGVHVVTVNDYLAQRDAENNRPLFEFLG 143 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-------SSCCEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-------CCcEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 389999999999999998 899999999999999999865432 45799999999999999999999999999
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhcc------ccccCcccEEEecccccc-cCC----------
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRML-DMG---------- 336 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~~------~~l~~~~~IViDEaH~ml-~~g---------- 336 (703)
+.+.+++|+... +.+.+..+++|+|+||++| ++++..+. +.+..+.++||||||+|+ +++
T Consensus 144 l~v~~i~GG~~~--~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~ 221 (853)
T 2fsf_A 144 LTVGINLPGMPA--PAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPA 221 (853)
T ss_dssp CCEEECCTTCCH--HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-
T ss_pred CeEEEEeCCCCH--HHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCC
Confidence 999999999754 3445555799999999999 78887542 557889999999999999 543
Q ss_pred -----ChHHHHHHHHHcCC--------------------CceEE------------------------EEeccCcHHHHH
Q 005313 337 -----FEPQIRKIVKEVPA--------------------RRQTL------------------------MYTATWPREVRK 367 (703)
Q Consensus 337 -----f~~~i~~il~~l~~--------------------~~q~L------------------------~lSAT~p~~v~~ 367 (703)
|...+..|+..+++ .+|++ ++|||.+..+..
T Consensus 222 ~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~ 301 (853)
T 2fsf_A 222 EDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHH 301 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHH
Confidence 55678888888764 45654 899997542111
Q ss_pred H---H--HHhhcC-------------------------------------ceecccccchhhhccccce-----------
Q 005313 368 I---A--ADLLVN-------------------------------------PVQVNIGNVDELAANKAIT----------- 394 (703)
Q Consensus 368 l---~--~~~l~~-------------------------------------~~~i~i~~~~~~~~~~~i~----------- 394 (703)
+ + ..++.. +..+.+..... ....|+
T Consensus 302 i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~--tla~It~qnyfr~Y~kl 379 (853)
T 2fsf_A 302 VTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQ--TLASITFQNYFRLYEKL 379 (853)
T ss_dssp -------------------------------------------------------CCCCCE--EEEEEEHHHHHTTSSEE
T ss_pred HHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccccc--ccceeehHHHHhhhhhh
Confidence 1 1 111110 00111110000 000000
Q ss_pred ------------------------------------EEEEEeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHH
Q 005313 395 ------------------------------------QHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLAR 437 (703)
Q Consensus 395 ------------------------------------~~~~~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~ 437 (703)
+.+......+|...|...+... ..+.++||||+|++.++.|++
T Consensus 380 ~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~ 459 (853)
T 2fsf_A 380 AGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSN 459 (853)
T ss_dssp EEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred hcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 0123345567888888877653 567899999999999999999
Q ss_pred HHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC------------------------------
Q 005313 438 NLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD------------------------------ 486 (703)
Q Consensus 438 ~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~------------------------------ 486 (703)
.|. .++++.+||++..+.++..+.++|+.| .|+|||++++||+||+.
T Consensus 460 ~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (853)
T 2fsf_A 460 ELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRH 537 (853)
T ss_dssp HHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhh
Confidence 998 579999999999988998888999988 69999999999999987
Q ss_pred --c-----cEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 487 --I-----RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 487 --v-----~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
| .+||++++|.+...|+||+||+||.|.+|.+++|++..|.
T Consensus 538 ~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 538 DAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 3 5999999999999999999999999999999999987663
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.4e-39 Score=393.22 Aligned_cols=321 Identities=21% Similarity=0.233 Sum_probs=254.7
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHc----CC--CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEE
Q 005313 180 GFPPELLREVHN-AGFSSPTPIQAQSWPIALQ----SR--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252 (703)
Q Consensus 180 ~l~~~l~~~l~~-~g~~~p~piQ~~ai~~il~----gr--dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl 252 (703)
.++..+.+.+.. .+| ++||+|.++|+.++. ++ ++|++++||+|||++++++++..+.. ++++|||
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-------g~~vlvl 658 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-------HKQVAVL 658 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-------TCEEEEE
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCeEEEE
Confidence 455666666644 355 579999999999987 55 89999999999999999988876643 4699999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCc---hhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEEEec
Q 005313 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDE 328 (703)
Q Consensus 253 ~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~---~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDE 328 (703)
+||++|+.|+++.++++....++.+..+.+...... .+..+.. .++|+|+||+.|. ..+.+.++++|||||
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDE 733 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDE 733 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEES
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEec
Confidence 999999999999999988877888888877654332 2334545 4999999998763 356788999999999
Q ss_pred ccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHH
Q 005313 329 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR 408 (703)
Q Consensus 329 aH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 408 (703)
+|++ ......++..+....++|+||||+.+....+....+.+...+...... ...+...+ ....+...
T Consensus 734 aH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~----r~~i~~~~---~~~~~~~i 801 (1151)
T 2eyq_A 734 EHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR----RLAVKTFV---REYDSMVV 801 (1151)
T ss_dssp GGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB----CBCEEEEE---EECCHHHH
T ss_pred hHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC----ccccEEEE---ecCCHHHH
Confidence 9994 445667777777889999999998777666665555444333221111 11122222 22233444
Q ss_pred HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc---CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 005313 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR---QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK 485 (703)
Q Consensus 409 L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~---~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp 485 (703)
+..+++....+.++||||++++.++.+++.|.+ .+.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 555666666788999999999999999999985 46799999999999999999999999999999999999999999
Q ss_pred CccEEEEecC-CCCHHHHHHHHhccCCCCCccEEEEEEecC
Q 005313 486 DIRVVVNYDF-PTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 486 ~v~~VI~~d~-P~s~~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
++++||+++. ++++.+|+||+||+||.|+.|.|++++.+.
T Consensus 882 ~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 882 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999988 579999999999999999999999988654
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=6.3e-39 Score=388.00 Aligned_cols=308 Identities=18% Similarity=0.202 Sum_probs=237.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.|+++|.++|+.+++++++|+++|||+|||++|++++...+.. +.++||++|+++|+.|+++.++++.. ++
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-------g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-------MTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-------TCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-------CCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 5899999999999999999999999999999999988776643 46899999999999999999998754 56
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEE
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L 355 (703)
.+..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.++++...+.+++..+++..|+|
T Consensus 110 ~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 110 NIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp CEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred eEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 777888876432 2379999999999999987777788999999999999999999999999999999999999
Q ss_pred EEeccCcHHHHHHHHHhh---cCceecccccchhhhcccc------ce--------------------------------
Q 005313 356 MYTATWPREVRKIAADLL---VNPVQVNIGNVDELAANKA------IT-------------------------------- 394 (703)
Q Consensus 356 ~lSAT~p~~v~~l~~~~l---~~~~~i~i~~~~~~~~~~~------i~-------------------------------- 394 (703)
++|||+++.. ++...+. ...+.+............. +.
T Consensus 183 lLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (997)
T 4a4z_A 183 LLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSK 261 (997)
T ss_dssp EEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------
T ss_pred EEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccc
Confidence 9999997543 3333221 1111111000000000000 00
Q ss_pred ---------------------------------------------------EEEEEeccchhHHHHHHHHHhcCCCCeEE
Q 005313 395 ---------------------------------------------------QHIEVLAPMDKHRRLEQILRSQEPGSKII 423 (703)
Q Consensus 395 ---------------------------------------------------~~~~~~~~~~k~~~L~~ll~~~~~~~kvL 423 (703)
.+........+...|...+... ...++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~~~~I 340 (997)
T 4a4z_A 262 TDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-ELLPMV 340 (997)
T ss_dssp -------------------------------------------------------CCCCTTHHHHHHHHHHHT-TCCSEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CCCCEE
Confidence 0000001223344555556554 346999
Q ss_pred EEcCCHHHHHHHHHHHhc-C---------------------------------------CceeEecCCCCHHHHHHHHHH
Q 005313 424 VFCSTKKMCDQLARNLTR-Q---------------------------------------FGAAAIHGDKSQSERDYVLNQ 463 (703)
Q Consensus 424 VF~~s~~~a~~la~~L~~-~---------------------------------------~~~~~lhg~~~~~eR~~vl~~ 463 (703)
|||++++.|+.++..|.+ . .++..+|+++++.+|+.+++.
T Consensus 341 VF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~ 420 (997)
T 4a4z_A 341 VFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEIL 420 (997)
T ss_dssp EECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHH
Confidence 999999999999998854 1 157899999999999999999
Q ss_pred HhcCCCcEEEEcccccccCCCCCccEEEEecCCC---------CHHHHHHHHhccCCCC--CccEEEEEE
Q 005313 464 FRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT---------GVEDYVHRIGRTGRAG--ATGVAYTFF 522 (703)
Q Consensus 464 F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~---------s~~~yiQriGRagR~G--~~g~~i~~~ 522 (703)
|++|.++|||||+++++|||+|+ ..||+++++. ++.+|+||+||+||.| ..|.|++++
T Consensus 421 F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 421 FSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred HHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 99999999999999999999999 5555544444 9999999999999998 467777777
No 38
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.9e-39 Score=374.52 Aligned_cols=322 Identities=19% Similarity=0.230 Sum_probs=253.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 192 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 192 ~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
.|+ .||++|..+++.+++|+ |+.++||+|||++|++|++..... +..++||+||++||.|..+++..+..
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-------g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-------GNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-------TSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-------CCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 577 99999999999999998 999999999999999999765443 34799999999999999999999999
Q ss_pred CCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhc------cccccCcccEEEecccccc-cC--------
Q 005313 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRML-DM-------- 335 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~------~~~l~~~~~IViDEaH~ml-~~-------- 335 (703)
.+++.+.+++|+... +.+.+..+|+|+|+||++| ++++..+ .+.+..+.++||||||+|| |+
T Consensus 178 ~lGLsv~~i~gg~~~--~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiS 255 (922)
T 1nkt_A 178 FLGLQVGVILATMTP--DERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIIS 255 (922)
T ss_dssp HTTCCEEECCTTCCH--HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEE
T ss_pred hcCCeEEEEeCCCCH--HHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeec
Confidence 999999999998753 3344445699999999999 8888754 3567789999999999998 43
Q ss_pred -------CChHHHHHHHHHcC---------CCceEE-----------------EEeccCcH---HHHHHH--HHhhcCc-
Q 005313 336 -------GFEPQIRKIVKEVP---------ARRQTL-----------------MYTATWPR---EVRKIA--ADLLVNP- 376 (703)
Q Consensus 336 -------gf~~~i~~il~~l~---------~~~q~L-----------------~lSAT~p~---~v~~l~--~~~l~~~- 376 (703)
+|...+..|+..++ +.+|++ ++|||.+. .+...+ ..++...
T Consensus 256 g~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~ 335 (922)
T 1nkt_A 256 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDK 335 (922)
T ss_dssp EECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTT
T ss_pred CCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccc
Confidence 47788999999998 688998 99999864 333322 1122111
Q ss_pred -------ee-----------------------------cccccchhh---------------------------------
Q 005313 377 -------VQ-----------------------------VNIGNVDEL--------------------------------- 387 (703)
Q Consensus 377 -------~~-----------------------------i~i~~~~~~--------------------------------- 387 (703)
.. +.+......
T Consensus 336 dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~i 415 (922)
T 1nkt_A 336 DYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEI 415 (922)
T ss_dssp TEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHH
Confidence 00 000000000
Q ss_pred --------hccccc----eEEEEEeccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCC
Q 005313 388 --------AANKAI----TQHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKS 453 (703)
Q Consensus 388 --------~~~~~i----~~~~~~~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~ 453 (703)
+.+..+ ...+......+|...|...+... ..+.++||||+|++.++.|++.|. .++++.+||++..
T Consensus 416 Y~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 416 YKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp HCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred hCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 000000 00122344556777777766543 456799999999999999999998 5799999999998
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc----------------------------------------------
Q 005313 454 QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI---------------------------------------------- 487 (703)
Q Consensus 454 ~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v---------------------------------------------- 487 (703)
+.++..+.++|+.| .|+|||++++||+||+.+
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 88888888888877 699999999999999964
Q ss_pred ------cEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 488 ------RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 488 ------~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
.+||++++|.+...|+|++||+||.|.+|.+++|++..|.
T Consensus 574 V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 574 VIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998775
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.8e-38 Score=395.95 Aligned_cols=341 Identities=18% Similarity=0.257 Sum_probs=258.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 181 FPPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 181 l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
|.+...+++...+|..++|+|.++++.++.. +|++++||||||||++|.+|++..+.... +.++|||+|+++|+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-----~~kavyi~P~raLa 985 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-----EGRCVYITPMEALA 985 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----TCCEEEECSCHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----CCEEEEEcChHHHH
Confidence 5567788888889999999999999999865 68999999999999999999999887632 34899999999999
Q ss_pred HHHHHHHHH-hcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc--cccccCcccEEEecccccccCC
Q 005313 260 TQIQDEAVK-FGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RISLNQVSYLVLDEADRMLDMG 336 (703)
Q Consensus 260 ~Q~~~~~~k-~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~--~~~l~~~~~IViDEaH~ml~~g 336 (703)
.|+++++++ +....++++..++|+.... .+ ....++|+||||++|..++... ...++++++|||||+|++.+.
T Consensus 986 ~q~~~~~~~~f~~~~g~~V~~ltGd~~~~--~~-~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~- 1061 (1724)
T 4f92_B 986 EQVYMDWYEKFQDRLNKKVVLLTGETSTD--LK-LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE- 1061 (1724)
T ss_dssp HHHHHHHHHHHTTTSCCCEEECCSCHHHH--HH-HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-
T ss_pred HHHHHHHHHHhchhcCCEEEEEECCCCcc--hh-hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-
Confidence 999988865 6666889999998875422 11 2234799999999997777542 234788999999999988764
Q ss_pred ChHHHHHHHH-------HcCCCceEEEEeccCcHHHHHHHHHhhcCcee-cccccchhhhccccceEEEEEeccchhH--
Q 005313 337 FEPQIRKIVK-------EVPARRQTLMYTATWPREVRKIAADLLVNPVQ-VNIGNVDELAANKAITQHIEVLAPMDKH-- 406 (703)
Q Consensus 337 f~~~i~~il~-------~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~-i~i~~~~~~~~~~~i~~~~~~~~~~~k~-- 406 (703)
....+..++. .+++..|+|+||||+++ ..+++..+-..... +.+. .......+..++.........
T Consensus 1062 rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~---~~~RPvpL~~~i~~~~~~~~~~~ 1137 (1724)
T 4f92_B 1062 NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFH---PNVRPVPLELHIQGFNISHTQTR 1137 (1724)
T ss_dssp THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECC---GGGCSSCEEEEEEEECCCSHHHH
T ss_pred CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeC---CCCCCCCeEEEEEeccCCCchhh
Confidence 5555555443 35678999999999984 45555544333211 1111 111222334444333322221
Q ss_pred -----HHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-----------------------------------CCcee
Q 005313 407 -----RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-----------------------------------QFGAA 446 (703)
Q Consensus 407 -----~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-----------------------------------~~~~~ 446 (703)
..+...+.....++++||||++++.|+.++..|.. ..+++
T Consensus 1138 ~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa 1217 (1724)
T 4f92_B 1138 LLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1217 (1724)
T ss_dssp HHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEE
T ss_pred hhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEE
Confidence 22344555667778999999999999988876631 13688
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----ec------CCCCHHHHHHHHhccCCCCC--
Q 005313 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YD------FPTGVEDYVHRIGRTGRAGA-- 514 (703)
Q Consensus 447 ~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~----~d------~P~s~~~yiQriGRagR~G~-- 514 (703)
++|++|++.+|..+++.|++|.++|||||+++++|||+|.+.+||. || .|.++.+|+||+|||||.|.
T Consensus 1218 ~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~ 1297 (1724)
T 4f92_B 1218 YLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDD 1297 (1724)
T ss_dssp EECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCS
T ss_pred EECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCC
Confidence 9999999999999999999999999999999999999999999883 32 35689999999999999986
Q ss_pred ccEEEEEEecCChHHHHHHH
Q 005313 515 TGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 515 ~g~~i~~~~~~d~~~~~~l~ 534 (703)
.|.|++++...+..+.++++
T Consensus 1298 ~G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1298 EGRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp CEEEEEEEEGGGHHHHHHHT
T ss_pred ceEEEEEecchHHHHHHHHh
Confidence 69999999887766655543
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.5e-38 Score=400.45 Aligned_cols=345 Identities=21% Similarity=0.269 Sum_probs=254.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCCEEEEecCCChHHHHHHHHHHHHHhhccCC----CCCCCEEEEEcCc
Q 005313 181 FPPELLREVHNAGFSSPTPIQAQSWPIALQ-SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND----PRLGPTVLVLSPT 255 (703)
Q Consensus 181 l~~~l~~~l~~~g~~~p~piQ~~ai~~il~-grdvlv~ApTGsGKTla~llp~l~~l~~~~~~----~~~g~~vLIl~Pt 255 (703)
||+.....+. ||++++++|.++++.++. ++|+|++||||+|||++|.++++..+.+.... ...+.++|||+|+
T Consensus 66 Lp~~~~~~f~--g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGFE--GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTCT--TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhcC--CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 5554444332 799999999999999885 67999999999999999999999988764322 1235699999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcc--ccccCcccEEEecccccc
Q 005313 256 RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR--ISLNQVSYLVLDEADRML 333 (703)
Q Consensus 256 reLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~--~~l~~~~~IViDEaH~ml 333 (703)
++|+.|+++.+++.+...++.+..++|+....... ...++|+|+|||+|..++.... ..++++++|||||+|.+.
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 99999999999998888999999999987654321 2348999999999966554321 236789999999999665
Q ss_pred cCCChHHHHHHHH-------HcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchh-
Q 005313 334 DMGFEPQIRKIVK-------EVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDK- 405 (703)
Q Consensus 334 ~~gf~~~i~~il~-------~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k- 405 (703)
+ .....++.++. .+++..|+|+||||+|+ .++++..+-.++.. .+...+.......+.+++..+.....
T Consensus 221 d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~-~~~~~~~~~RPvpL~~~~~~~~~~~~~ 297 (1724)
T 4f92_B 221 D-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAK-GLFYFDNSFRPVPLEQTYVGITEKKAI 297 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHH-HEEECCGGGCSSCEEEECCEECCCCHH
T ss_pred C-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCC-CeEEECCCCccCccEEEEeccCCcchh
Confidence 4 55555555443 45788999999999984 44555433222211 00001111122233444333333221
Q ss_pred --HHH----HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc--------------------------------------
Q 005313 406 --HRR----LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-------------------------------------- 441 (703)
Q Consensus 406 --~~~----L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-------------------------------------- 441 (703)
... +...+.....++++||||++++.|+.+|+.|.+
T Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 377 (1724)
T 4f92_B 298 KRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLL 377 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHh
Confidence 122 223333445567999999999999988887742
Q ss_pred CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----ecC------CCCHHHHHHHHhccCC
Q 005313 442 QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YDF------PTGVEDYVHRIGRTGR 511 (703)
Q Consensus 442 ~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~----~d~------P~s~~~yiQriGRagR 511 (703)
..+++++|++|++++|..+++.|++|.++|||||++++.|||+|.+++||. |+. |.++.+|+||+|||||
T Consensus 378 ~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR 457 (1724)
T 4f92_B 378 PYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGR 457 (1724)
T ss_dssp TTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSC
T ss_pred hcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccC
Confidence 135889999999999999999999999999999999999999999999985 443 4689999999999999
Q ss_pred CCC--ccEEEEEEecCChHHHHHH
Q 005313 512 AGA--TGVAYTFFGDQDSRYASDL 533 (703)
Q Consensus 512 ~G~--~g~~i~~~~~~d~~~~~~l 533 (703)
.|. .|.++++....+......+
T Consensus 458 ~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 458 PQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCCccEEEEEecchhHHHHHHH
Confidence 874 6899998887776554443
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.3e-39 Score=363.28 Aligned_cols=312 Identities=15% Similarity=0.151 Sum_probs=235.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
.+|+++|.++++.+++++++|++++||+|||++++++++..+... ..++|||+|+++|+.||.++++++.....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY------EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC------SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC------CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 489999999999999999999999999999999999888877541 23899999999999999999999977777
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceE
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~ 354 (703)
+.+..++++.....+ +...++|+|+|++.|.. .....+.++++|||||||++.. ..+..++..+.+..++
T Consensus 186 ~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~ 255 (510)
T 2oca_A 186 AMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFK 255 (510)
T ss_dssp GGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEE
T ss_pred cceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEE
Confidence 788888888765543 44568999999998754 2335577899999999999864 5677888888888899
Q ss_pred EEEeccCcHHHHHHHH-HhhcCceecccccchhh----hccccceEEEEEe---------------------ccchhHHH
Q 005313 355 LMYTATWPREVRKIAA-DLLVNPVQVNIGNVDEL----AANKAITQHIEVL---------------------APMDKHRR 408 (703)
Q Consensus 355 L~lSAT~p~~v~~l~~-~~l~~~~~i~i~~~~~~----~~~~~i~~~~~~~---------------------~~~~k~~~ 408 (703)
|+||||+++....+.. ..+..+..+.+...+.. .....+....... ....+...
T Consensus 256 l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (510)
T 2oca_A 256 FGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKW 335 (510)
T ss_dssp EEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHH
T ss_pred EEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHH
Confidence 9999999766433221 11223332222211100 0000011111111 01122333
Q ss_pred HHHHHHhc-C-CCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccccCCC
Q 005313 409 LEQILRSQ-E-PGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT-DVAARGLDI 484 (703)
Q Consensus 409 L~~ll~~~-~-~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaT-dv~~~GIDI 484 (703)
+..++... . .+.++||||. .++++.+++.|.+ ...+..+||++++.+|+.+++.|++|+++||||| +++++|||+
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDi 414 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISV 414 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCC
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccc
Confidence 44444433 2 3456677776 8899999999985 3589999999999999999999999999999999 999999999
Q ss_pred CCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEe
Q 005313 485 KDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFG 523 (703)
Q Consensus 485 p~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~ 523 (703)
|++++||+++.|+++..|+|++||+||.|+.+.++++++
T Consensus 415 p~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 415 KNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999998774444444
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.2e-38 Score=358.19 Aligned_cols=291 Identities=23% Similarity=0.258 Sum_probs=218.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..|+++|.++++.+++++++|++++||+|||++|++++... +.++|||||+++|+.||.+++.+| +
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 37999999999999999999999999999999998887654 247999999999999999999885 5
Q ss_pred ce-EEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCce
Q 005313 275 IS-CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353 (703)
Q Consensus 275 i~-v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q 353 (703)
+. +..++|+... ..+|+|+|++.|...+.. ...++++|||||||++.+..|.. ++..+ +..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 66 7777776543 368999999999776542 12468999999999998876643 44444 4567
Q ss_pred EEEEeccCcHH-------------------HHHHHHHhhcCceeccc--ccc-hhhhc---------------------c
Q 005313 354 TLMYTATWPRE-------------------VRKIAADLLVNPVQVNI--GNV-DELAA---------------------N 390 (703)
Q Consensus 354 ~L~lSAT~p~~-------------------v~~l~~~~l~~~~~i~i--~~~-~~~~~---------------------~ 390 (703)
+|++|||+.+. ..++...++..+....+ ... .+... .
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 99999998632 22221111221111100 000 00000 0
Q ss_pred ccceEEE---------------------EEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcCCceeEec
Q 005313 391 KAITQHI---------------------EVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIH 449 (703)
Q Consensus 391 ~~i~~~~---------------------~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~~~~~~lh 449 (703)
..+.+.+ .......|...|.++++. ..+.++||||++++.++.+++.|. +..+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~----~~~~~ 375 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL----IPAIT 375 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT----CCBCC
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC----cceee
Confidence 0000000 001233466777777777 456899999999999999999884 67899
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCc-cEEEEE
Q 005313 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGAT-GVAYTF 521 (703)
Q Consensus 450 g~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~-g~~i~~ 521 (703)
++++..+|+.+++.|++|+++|||||+++++|||+|++++||+++.|+++..|+|++||++|.|+. +.+++|
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999865 455443
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.6e-39 Score=373.47 Aligned_cols=313 Identities=18% Similarity=0.134 Sum_probs=228.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHH
Q 005313 180 GFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 259 (703)
Q Consensus 180 ~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa 259 (703)
.+++.+++.+... ...++|+|+++++.+++++++|++|+||||||++|++|++..+.. .++++|||+||++|+
T Consensus 156 ~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~------~~~~vLvl~PtreLa 228 (618)
T 2whx_A 156 TKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK------RRLRTLILAPTRVVA 228 (618)
T ss_dssp ------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------TTCCEEEEESSHHHH
T ss_pred cchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh------CCCeEEEEcChHHHH
Confidence 3444444444332 467888888889999999999999999999999999999988765 246899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChH
Q 005313 260 TQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEP 339 (703)
Q Consensus 260 ~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~ 339 (703)
.|+.+.++. +.+. ....... .....+..|.++|.+.|...+... ..+.++++|||||||+| +.+|..
T Consensus 229 ~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~ 295 (618)
T 2whx_A 229 AEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVA 295 (618)
T ss_dssp HHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHH
T ss_pred HHHHHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHH
Confidence 999988752 2222 1111100 011223567888999887766543 45889999999999998 777888
Q ss_pred HHHHHHHHcC-CCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCC
Q 005313 340 QIRKIVKEVP-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEP 418 (703)
Q Consensus 340 ~i~~il~~l~-~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~ 418 (703)
.+..++..++ +++|+|+||||++..+..++. .++..+.+.. ... ..+...+...+...
T Consensus 296 ~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~---------------~~~-~~~~~~ll~~l~~~-- 354 (618)
T 2whx_A 296 ARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIER---------------EIP-ERSWNTGFDWITDY-- 354 (618)
T ss_dssp HHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC---------------CCC-SSCCSSSCHHHHHC--
T ss_pred HHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecc---------------cCC-HHHHHHHHHHHHhC--
Confidence 8888887775 689999999999865432111 1111111100 000 01111222233332
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEE-------
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVV------- 490 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~V------- 490 (703)
..++||||++++.|+.+++.|.+ .+.+..+|++ +|+++++.|++|+++|||||+++++||||| +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 46999999999999999999984 6789999984 788899999999999999999999999997 8887
Q ss_pred -------------EEecCCCCHHHHHHHHhccCCCCC-ccEEEEEEe---cCChHHHHHHHHHHH
Q 005313 491 -------------VNYDFPTGVEDYVHRIGRTGRAGA-TGVAYTFFG---DQDSRYASDLIKLLE 538 (703)
Q Consensus 491 -------------I~~d~P~s~~~yiQriGRagR~G~-~g~~i~~~~---~~d~~~~~~l~~~l~ 538 (703)
|++++|.+.++|+||+||+||.|. +|.|++|+. +.+...+..+.+.+.
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~ 494 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKML 494 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHH
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhc
Confidence 788889999999999999999975 899999997 666666666665543
No 44
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.5e-37 Score=318.48 Aligned_cols=234 Identities=52% Similarity=0.942 Sum_probs=216.1
Q ss_pred CCCHHHHHhcCCeEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHH
Q 005313 150 SISSEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~l 229 (703)
..+..++++++.+.+.+...|.|+.+|++++|++.+++.+.+.||..|+++|.++|+.+++++++++++|||+|||++|+
T Consensus 5 ~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 5 AQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp -CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred HHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHH
Q 005313 230 LPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLN 308 (703)
Q Consensus 230 lp~l~~l~~~~~-~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~ 308 (703)
+|++..+..... ....++++|||+||++|+.|+.+.++++....++.+.+++|+.....+...+..+++|+|+||++|.
T Consensus 85 l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 164 (242)
T 3fe2_A 85 LPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 164 (242)
T ss_dssp HHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHH
T ss_pred HHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHH
Confidence 999998875332 1234678999999999999999999999888889999999998888887888888999999999999
Q ss_pred HHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceeccccc
Q 005313 309 DILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383 (703)
Q Consensus 309 ~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~ 383 (703)
+++......+.++++|||||||+|++++|...+..++..+++++|+++||||+++.+.+++..++.+++.+.++.
T Consensus 165 ~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 165 DFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999988888999999999999999999999999999999999999999999999999999999999999888754
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.6e-37 Score=345.50 Aligned_cols=286 Identities=17% Similarity=0.153 Sum_probs=209.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCCE-EEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 193 GFSSPTPIQAQSWPIALQSRDI-VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~grdv-lv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
|+.+++|+|+ +|+.+++++++ |+++|||||||++|++|++..+.. .++++|||+||++|+.|+.+.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~------~~~~~lvl~Ptr~La~Q~~~~l~g--- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL------RRLRTLILAPTRVVAAEMEEALRG--- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh------cCCcEEEECCCHHHHHHHHHHhcC---
Confidence 6788999985 79999999887 778999999999999999877654 246899999999999999988742
Q ss_pred CCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHH-HcCC
Q 005313 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK-EVPA 350 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~-~l~~ 350 (703)
+.+......... ....+..|.++|++.|.+.+... ..+.++++|||||||++ +..+...+..+.. ...+
T Consensus 71 ---~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 71 ---LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp ---SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred ---ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 222211111100 12234679999999998777643 55789999999999977 4433333333332 2456
Q ss_pred CceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHH
Q 005313 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKK 430 (703)
Q Consensus 351 ~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~ 430 (703)
+.|+|+||||++..+..+ +..++..+.+.. . .. ......+...+... ..++||||++++
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~--~-------------~p-~~~~~~~~~~l~~~--~~~~lVF~~s~~ 199 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIER--E-------------IP-ERSWNTGFDWITDY--QGKTVWFVPSIK 199 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEEC--C-------------CC-SSCCSSSCHHHHHC--CSCEEEECSSHH
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCc--c-------------CC-chhhHHHHHHHHhC--CCCEEEEcCCHH
Confidence 799999999997643221 111111111110 0 00 00001112233332 458999999999
Q ss_pred HHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEec---------------
Q 005313 431 MCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYD--------------- 494 (703)
Q Consensus 431 ~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d--------------- 494 (703)
.|+.+++.|.+ .+.+..+|+++. +.+++.|++|+++|||||+++++|||||+ ++||++|
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 99999999984 678899999754 57899999999999999999999999999 9999998
Q ss_pred -----CCCCHHHHHHHHhccCCCCC-ccEEEEEEec
Q 005313 495 -----FPTGVEDYVHRIGRTGRAGA-TGVAYTFFGD 524 (703)
Q Consensus 495 -----~P~s~~~yiQriGRagR~G~-~g~~i~~~~~ 524 (703)
.|.+.++|+||+||+||.|+ .|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8889888643
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.7e-38 Score=352.24 Aligned_cols=293 Identities=15% Similarity=0.156 Sum_probs=192.5
Q ss_pred HHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCC
Q 005313 207 IALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPK 286 (703)
Q Consensus 207 ~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~ 286 (703)
.+++++++|+++|||||||++|++|++..+.. .++++|||+||++|+.|+++.++.+. + ....+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~------~~~~~lil~Ptr~La~Q~~~~l~~~~----v--~~~~~~~~~ 71 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR------RRLRTLVLAPTRVVLSEMKEAFHGLD----V--KFHTQAFSA 71 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTTTSC----E--EEESSCCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh------cCCeEEEEcchHHHHHHHHHHHhcCC----e--EEeccccee
Confidence 35678999999999999999999999987654 14689999999999999998886432 2 211111000
Q ss_pred CchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHc-CCCceEEEEeccCcHHH
Q 005313 287 GPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARRQTLMYTATWPREV 365 (703)
Q Consensus 287 ~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l-~~~~q~L~lSAT~p~~v 365 (703)
....+.-+-+.+.+.+...+. ....+.++++|||||||++ +..+...+..+...+ +.+.|+|+||||++..+
T Consensus 72 -----v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~ 144 (440)
T 1yks_A 72 -----HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTS 144 (440)
T ss_dssp -----CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred -----ccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchh
Confidence 000011122333333332222 2344788999999999998 433333333333332 46799999999997653
Q ss_pred HHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCc
Q 005313 366 RKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFG 444 (703)
Q Consensus 366 ~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~ 444 (703)
..++. .. ..+......+....+...+..+. .. +.++||||++++.++.+++.|.+ .+.
T Consensus 145 ~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~~l~-~~--~~~~lVF~~s~~~a~~l~~~L~~~~~~ 203 (440)
T 1yks_A 145 DEFPH----SN--------------GEIEDVQTDIPSEPWNTGHDWIL-AD--KRPTAWFLPSIRAANVMAASLRKAGKS 203 (440)
T ss_dssp CSSCC----CS--------------SCEEEEECCCCSSCCSSSCHHHH-HC--CSCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred hhhhh----cC--------------CCeeEeeeccChHHHHHHHHHHH-hc--CCCEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 32111 00 00111111111111111222222 22 56999999999999999999984 678
Q ss_pred eeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE-------------------ecCCCCHHHHHHH
Q 005313 445 AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN-------------------YDFPTGVEDYVHR 505 (703)
Q Consensus 445 ~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~-------------------~d~P~s~~~yiQr 505 (703)
+..+|| ++|+.+++.|++|+++|||||+++++|||+| +++||+ ++.|.+.++|+||
T Consensus 204 v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr 278 (440)
T 1yks_A 204 VVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQR 278 (440)
T ss_dssp EEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHH
T ss_pred EEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHh
Confidence 999999 4688999999999999999999999999999 999986 8999999999999
Q ss_pred HhccCCC-CCccEEEEEE---ecCChHHHHHHHHHHHhccCcc
Q 005313 506 IGRTGRA-GATGVAYTFF---GDQDSRYASDLIKLLEGAKQQV 544 (703)
Q Consensus 506 iGRagR~-G~~g~~i~~~---~~~d~~~~~~l~~~l~~~~~~v 544 (703)
+||+||. +++|.|++|+ ++.+...+..+.+.+.....++
T Consensus 279 ~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l 321 (440)
T 1yks_A 279 RGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEV 321 (440)
T ss_dssp HTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCC
T ss_pred ccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccc
Confidence 9999998 6899999996 5666666666665554433333
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=9.9e-37 Score=360.28 Aligned_cols=336 Identities=18% Similarity=0.241 Sum_probs=241.5
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCE
Q 005313 170 PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPT 248 (703)
Q Consensus 170 p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g-rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~ 248 (703)
+.++.+|+++++++.+.+.+...+ ..|+++|+++|+.++.+ +++++++|||+|||+ ++|++........ ..+.+
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~--~~g~~ 142 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPH--LENTQ 142 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGG--GGTCE
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcccc--CCCce
Confidence 346788999999999999999887 78999999999888765 578999999999998 5665533222111 12457
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEec
Q 005313 249 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDE 328 (703)
Q Consensus 249 vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDE 328 (703)
++|++|+++|+.|+.+.+.+... +.+...+|...... .......+|+|+|+++|.+.+... ..+.++++|||||
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~---~~v~~~vG~~i~~~--~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDE 216 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMD---VKLGEEVGYSIRFE--NKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDE 216 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTT---CCBTTTEEEEETTE--EECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECS
T ss_pred EEecCchHHHHHHHHHHHHHHhC---Cchhheecceeccc--cccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecC
Confidence 99999999999999887765432 11111111110000 111235789999999999877653 4588999999999
Q ss_pred ccc-cccCCCh-HHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhH
Q 005313 329 ADR-MLDMGFE-PQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKH 406 (703)
Q Consensus 329 aH~-ml~~gf~-~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~ 406 (703)
+|. +++..+. ..+..++. ..+..|+|+||||++.+ . +..++.+...+.+.... ..+.+++......++.
T Consensus 217 ah~R~ld~d~~~~~l~~l~~-~~~~~~iIl~SAT~~~~--~-l~~~~~~~~vi~v~gr~-----~pv~~~~~~~~~~~~~ 287 (773)
T 2xau_A 217 AHERTLATDILMGLLKQVVK-RRPDLKIIIMSATLDAE--K-FQRYFNDAPLLAVPGRT-----YPVELYYTPEFQRDYL 287 (773)
T ss_dssp GGGCCHHHHHHHHHHHHHHH-HCTTCEEEEEESCSCCH--H-HHHHTTSCCEEECCCCC-----CCEEEECCSSCCSCHH
T ss_pred ccccccchHHHHHHHHHHHH-hCCCceEEEEeccccHH--H-HHHHhcCCCcccccCcc-----cceEEEEecCCchhHH
Confidence 995 6654322 23334443 34578999999999642 3 34455543333332211 1233333222223332
Q ss_pred HH-HHHHHHh--cCCCCeEEEEcCCHHHHHHHHHHHhc------------CCceeEecCCCCHHHHHHHHHHHh-----c
Q 005313 407 RR-LEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTR------------QFGAAAIHGDKSQSERDYVLNQFR-----A 466 (703)
Q Consensus 407 ~~-L~~ll~~--~~~~~kvLVF~~s~~~a~~la~~L~~------------~~~~~~lhg~~~~~eR~~vl~~F~-----~ 466 (703)
.. +..++.. .....++||||+++++++.+++.|.+ .+.+..+|+++++++|..+++.|+ +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 22 2222221 23467999999999999999999873 567899999999999999999999 9
Q ss_pred CCCcEEEEcccccccCCCCCccEEEEecC------------------CCCHHHHHHHHhccCCCCCccEEEEEEecCC
Q 005313 467 GRSPVLVATDVAARGLDIKDIRVVVNYDF------------------PTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 526 (703)
Q Consensus 467 G~~~ILVaTdv~~~GIDIp~v~~VI~~d~------------------P~s~~~yiQriGRagR~G~~g~~i~~~~~~d 526 (703)
|..+|||||+++++|||||+|++||++++ |.+.++|+||+||+||. ..|.|++|+++.+
T Consensus 368 g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 99999999999999999999999999887 88999999999999999 8899999986543
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.5e-37 Score=357.13 Aligned_cols=295 Identities=18% Similarity=0.174 Sum_probs=207.1
Q ss_pred CCcHHHH-----HHHHHHH------cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHH
Q 005313 196 SPTPIQA-----QSWPIAL------QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQD 264 (703)
Q Consensus 196 ~p~piQ~-----~ai~~il------~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~ 264 (703)
.|+++|+ ++|+.++ +++++|++++||||||++|++|++..+.. .++++|||+||++|+.|+++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------~~~~~lilaPTr~La~Q~~~ 288 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------KRLRTAVLAPTRVVAAEMAE 288 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCcEEEEccHHHHHHHHHH
Confidence 7889999 9999888 89999999999999999999999987654 24689999999999999998
Q ss_pred HHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHH
Q 005313 265 EAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKI 344 (703)
Q Consensus 265 ~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~i 344 (703)
.++.+. +. ...+... .....+.-+-+.+.+.+...+.. ...+.++++|||||||++ +..+...+..+
T Consensus 289 ~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~-~~~l~~l~lvViDEaH~~-~~~~~~~~~~l 355 (673)
T 2wv9_A 289 ALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMS-PLRVPNYNLFVMDEAHFT-DPASIAARGYI 355 (673)
T ss_dssp HTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHS-SSCCCCCSEEEEESTTCC-CHHHHHHHHHH
T ss_pred HHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhc-ccccccceEEEEeCCccc-CccHHHHHHHH
Confidence 887542 21 1111000 00111233555666666554443 356889999999999997 22222333333
Q ss_pred HHHc-CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEE
Q 005313 345 VKEV-PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKII 423 (703)
Q Consensus 345 l~~l-~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvL 423 (703)
...+ +...|+|+||||++..+..+. ... ..+......+....... +...+.. .+.++|
T Consensus 356 ~~~~~~~~~~vl~~SAT~~~~i~~~~----~~~--------------~~i~~v~~~~~~~~~~~-~l~~l~~--~~~~~l 414 (673)
T 2wv9_A 356 ATRVEAGEAAAIFMTATPPGTSDPFP----DTN--------------SPVHDVSSEIPDRAWSS-GFEWITD--YAGKTV 414 (673)
T ss_dssp HHHHHTTSCEEEEECSSCTTCCCSSC----CCS--------------SCEEEEECCCCSSCCSS-CCHHHHS--CCSCEE
T ss_pred HHhccccCCcEEEEcCCCChhhhhhc----ccC--------------CceEEEeeecCHHHHHH-HHHHHHh--CCCCEE
Confidence 3333 367899999999975432111 000 00110000111111111 1222222 467999
Q ss_pred EEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----------
Q 005313 424 VFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN---------- 492 (703)
Q Consensus 424 VF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~---------- 492 (703)
|||++++.++.+++.|.+ .+.+..+|++ +|+.+++.|++|+++|||||+++++|||+| +++||+
T Consensus 415 VF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi 489 (673)
T 2wv9_A 415 WFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTIL 489 (673)
T ss_dssp EECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEE
T ss_pred EEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceee
Confidence 999999999999999984 6789999994 799999999999999999999999999999 999998
Q ss_pred ----------ecCCCCHHHHHHHHhccCCC-CCccEEEEEE---ecCChHHHHHHHH
Q 005313 493 ----------YDFPTGVEDYVHRIGRTGRA-GATGVAYTFF---GDQDSRYASDLIK 535 (703)
Q Consensus 493 ----------~d~P~s~~~yiQriGRagR~-G~~g~~i~~~---~~~d~~~~~~l~~ 535 (703)
|++|.+.++|+||+||+||. ++.|.|++|+ ++.+...+..+..
T Consensus 490 ~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~ 546 (673)
T 2wv9_A 490 DEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEA 546 (673)
T ss_dssp CSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred ecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHH
Confidence 67899999999999999999 7899999996 4555554444443
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=8e-36 Score=344.53 Aligned_cols=315 Identities=17% Similarity=0.219 Sum_probs=196.8
Q ss_pred CCCcHHHHHHHHHHHc----C-CCEEEEecCCChHHHHHHHHHHHHHhhcc--CCCCCCCEEEEEcCcHHHHHHHH-HHH
Q 005313 195 SSPTPIQAQSWPIALQ----S-RDIVAIAKTGSGKTLGYLLPGFIHLKRCR--NDPRLGPTVLVLSPTRELATQIQ-DEA 266 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~----g-rdvlv~ApTGsGKTla~llp~l~~l~~~~--~~~~~g~~vLIl~PtreLa~Q~~-~~~ 266 (703)
..|++||.++++.++. + ++++++++||+|||++++..+...+.... ......+++|||+|+++|+.|+. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4799999999999886 4 66899999999999997665544444320 11113568999999999999998 777
Q ss_pred HHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHH----hccccccCcccEEEecccccccCCChHHHH
Q 005313 267 VKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE----MRRISLNQVSYLVLDEADRMLDMGFEPQIR 342 (703)
Q Consensus 267 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~----~~~~~l~~~~~IViDEaH~ml~~gf~~~i~ 342 (703)
+.+.. .+..+.++ ......+|+|+|+++|.+.+. ...+....+++|||||||++.... ...+.
T Consensus 257 ~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 76643 23333322 123457999999999988764 334556779999999999987642 35667
Q ss_pred HHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEE------------------------
Q 005313 343 KIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIE------------------------ 398 (703)
Q Consensus 343 ~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~------------------------ 398 (703)
.++..++. .++|+||||+..........++..++.. ................+.
T Consensus 324 ~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~~~~-~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 324 EILEYFEP-AFQIGMTATPLREDNRDTYRYFGNPIYT-YSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCSCSEE-ECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHhCCc-ceEEEeccccccccchhHHHHcCCceEe-cCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 77777764 6799999998754433333444332211 000000000000000000
Q ss_pred ------Eeccc-------hhH----HHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhcCCc---------eeEecCCC
Q 005313 399 ------VLAPM-------DKH----RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFG---------AAAIHGDK 452 (703)
Q Consensus 399 ------~~~~~-------~k~----~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~~~~---------~~~lhg~~ 452 (703)
..... .+. ..|...++......++||||+++++|+.+++.|.+... +..+||++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 00000 011 12333455556668999999999999999999975322 67789987
Q ss_pred CHHHHHHHHHHHhcCCCc---EEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCC--ccEEEEEEecC
Q 005313 453 SQSERDYVLNQFRAGRSP---VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGA--TGVAYTFFGDQ 525 (703)
Q Consensus 453 ~~~eR~~vl~~F~~G~~~---ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~--~g~~i~~~~~~ 525 (703)
++ +|+.++++|++++.+ |||||+++++|||+|++++||++++|+++..|+||+||++|.++ .+..+++++..
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 64 799999999998866 89999999999999999999999999999999999999999875 34444444433
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.5e-37 Score=352.70 Aligned_cols=278 Identities=23% Similarity=0.264 Sum_probs=209.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.++++|+++++.+.+++++|++|+||+|||++|+++++.. +.++||++|||+|+.|+.+.+.+... .
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----------g~~vLVl~PTReLA~Qia~~l~~~~g---~ 283 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----------GYKVLVLNPSVAATLGFGAYMSKAHG---I 283 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----------TCCEEEEESCHHHHHHHHHHHHHHHS---C
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----------CCeEEEEcchHHHHHHHHHHHHHHhC---C
Confidence 4556677777777788899999999999999999887651 34899999999999999988766542 3
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCce--
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ-- 353 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q-- 353 (703)
.+...+|+.. +..+++|+|+||++| +....+.+.++++||||||| +++++|...+..|++.++..+|
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARL 352 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSE
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCce
Confidence 3445555532 345589999999998 45567778889999999996 6778888889999999987777
Q ss_pred EEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHH
Q 005313 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCD 433 (703)
Q Consensus 354 ~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~ 433 (703)
++++|||++..+. ...+....+. ..... .+........ + ......++||||++++.++
T Consensus 353 lil~SAT~~~~i~------~~~p~i~~v~----~~~~~----~i~~~~~~~~-------l-~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 353 VVLATATPPGSVT------VPHPNIEEVA----LSNTG----EIPFYGKAIP-------I-EAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEESSCTTCCC------CCCTTEEEEE----CBSCS----SEEETTEEEC-------G-GGSSSSEEEEECSCHHHHH
T ss_pred EEEECCCCCcccc------cCCcceEEEe----ecccc----hhHHHHhhhh-------h-hhccCCcEEEEeCCHHHHH
Confidence 7788999986311 0011000000 00000 0111111100 1 1224679999999999999
Q ss_pred HHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEE----------Eec--------
Q 005313 434 QLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV----------NYD-------- 494 (703)
Q Consensus 434 ~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI----------~~d-------- 494 (703)
.+++.|++ .+.+..+||++++++ |+++..+|||||+++++||||+ +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 99999984 688999999999875 4567779999999999999997 99888 677
Q ss_pred ---CCCCHHHHHHHHhccCCCCCccEEEEEEecCChHH
Q 005313 495 ---FPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRY 529 (703)
Q Consensus 495 ---~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~ 529 (703)
+|.+.++|+||+||+|| +++|. ++|+.+.+...
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 89999 88988766543
No 51
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=9.6e-35 Score=294.53 Aligned_cols=214 Identities=48% Similarity=0.851 Sum_probs=187.0
Q ss_pred CCCCCCCCCCCcC-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccC--C
Q 005313 166 GDEVPPPFMSFDA-TGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN--D 242 (703)
Q Consensus 166 ~~~~p~p~~sf~~-~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~--~ 242 (703)
....|+|+.+|++ +++++++++++.+.||.+|+++|+++|+.+++++++++++|||+|||++|++|++..+..... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 3457899999999 799999999999999999999999999999999999999999999999999999988754221 1
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcc
Q 005313 243 PRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 243 ~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
...++++|||+||++|+.|+.++++++. ..++.+.+++|+.....+...+..+++|+|+||++|.+++......+.+++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 1246789999999999999999999986 457888899999888888888888899999999999999988888899999
Q ss_pred cEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecc
Q 005313 323 YLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVN 380 (703)
Q Consensus 323 ~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~ 380 (703)
+|||||||++++++|...+..++..++++.|+|+||||+++.+++++..++.+|+.+.
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999999887664
No 52
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=7.5e-34 Score=321.29 Aligned_cols=326 Identities=18% Similarity=0.199 Sum_probs=222.7
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 195 SSPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 195 ~~p~piQ~~ai~~il----~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
..|+|||.+++..++ .++++|++++||+|||++++..+...... ....++|||||+ .|+.||.++++++.
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKFA 109 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHHC
Confidence 379999999998774 57899999999999999876544443322 113479999995 69999999999997
Q ss_pred CCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCC
Q 005313 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350 (703)
Q Consensus 271 ~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~ 350 (703)
.. +.+.++.+.... .....++|+|+|+++|.+... +....+++|||||||++.+.. ....+.+..++
T Consensus 110 ~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~- 176 (500)
T 1z63_A 110 PH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK- 176 (500)
T ss_dssp TT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-
T ss_pred CC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-
Confidence 54 555556655422 112347999999999975443 334568999999999997653 33445555664
Q ss_pred CceEEEEeccCcHH-HHHH---H---------------------------------HHhhcCceecccccch-hh--hcc
Q 005313 351 RRQTLMYTATWPRE-VRKI---A---------------------------------ADLLVNPVQVNIGNVD-EL--AAN 390 (703)
Q Consensus 351 ~~q~L~lSAT~p~~-v~~l---~---------------------------------~~~l~~~~~i~i~~~~-~~--~~~ 390 (703)
..+.+++|||+..+ ..++ + ..++ .++.+.....+ .. ...
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSC
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCC
Confidence 45689999998431 1111 1 1111 11111100000 00 000
Q ss_pred ccceEEEEE--------------------------------------------------------eccchhHHHHHHHHH
Q 005313 391 KAITQHIEV--------------------------------------------------------LAPMDKHRRLEQILR 414 (703)
Q Consensus 391 ~~i~~~~~~--------------------------------------------------------~~~~~k~~~L~~ll~ 414 (703)
......+.+ .....|...+.+++.
T Consensus 256 ~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~ 335 (500)
T 1z63_A 256 DKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIE 335 (500)
T ss_dssp SEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHH
Confidence 000011100 011234444555555
Q ss_pred hc-CCCCeEEEEcCCHHHHHHHHHHHhc--CCceeEecCCCCHHHHHHHHHHHhcC-CCc-EEEEcccccccCCCCCccE
Q 005313 415 SQ-EPGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQSERDYVLNQFRAG-RSP-VLVATDVAARGLDIKDIRV 489 (703)
Q Consensus 415 ~~-~~~~kvLVF~~s~~~a~~la~~L~~--~~~~~~lhg~~~~~eR~~vl~~F~~G-~~~-ILVaTdv~~~GIDIp~v~~ 489 (703)
.. ..+.++||||+++..++.+++.|.+ .+.+..+||++++++|+++++.|+++ .++ |||+|+++++|||++.+++
T Consensus 336 ~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 336 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp HHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred HHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 43 5678999999999999999999975 67889999999999999999999988 565 7999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhc
Q 005313 490 VVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGA 540 (703)
Q Consensus 490 VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~ 540 (703)
||++|+||++..|+|++||++|.|+...++++..-......+.+.+.++..
T Consensus 416 vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K 466 (500)
T 1z63_A 416 VIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFK 466 (500)
T ss_dssp EEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTC
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHH
Confidence 999999999999999999999999887776554444445556666666544
No 53
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=7.9e-35 Score=300.05 Aligned_cols=226 Identities=45% Similarity=0.735 Sum_probs=200.4
Q ss_pred cCCeEEcCCCCCC--CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHH
Q 005313 159 RHEVTVSGDEVPP--PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHL 236 (703)
Q Consensus 159 ~~~i~~~~~~~p~--p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l 236 (703)
+..+.+.+...|. ++.+|++++|++.++++|...||..|+++|.++|+.+++++++++++|||+|||++|++|++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 4556777888887 89999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhccCC-----CCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHH
Q 005313 237 KRCRND-----PRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDIL 311 (703)
Q Consensus 237 ~~~~~~-----~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l 311 (703)
...... ...++++|||+||++|+.|+.++++++....++.+.+++|+.....+...+..+++|+|+||++|.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 653211 123468999999999999999999999888889999999998887777778888999999999999999
Q ss_pred HhccccccCcccEEEecccccccCCChHHHHHHHHH--cCC--CceEEEEeccCcHHHHHHHHHhhcCceecccccc
Q 005313 312 EMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE--VPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNV 384 (703)
Q Consensus 312 ~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~--l~~--~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~ 384 (703)
....+.+.++++|||||||+|++++|...+..++.. ++. .+|+|+||||+++++.+++..++.+++.+.+...
T Consensus 166 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 166 EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp HTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred HcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 888888899999999999999999999999999985 444 6899999999999999999999999988877553
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.6e-35 Score=331.72 Aligned_cols=272 Identities=18% Similarity=0.191 Sum_probs=191.9
Q ss_pred HHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCC
Q 005313 205 WPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGA 284 (703)
Q Consensus 205 i~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~ 284 (703)
...+.+++++|+++|||+|||++|++|++..+.. .++++|||+||++|+.|+.+.++. +.+.......
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~ 82 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ------QRLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAV 82 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH------TTCCEEEEECSHHHHHHHHHHTTT------SCEEECC---
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEECchHHHHHHHHHHhcC------ceEeEEeccc
Confidence 4445667899999999999999999999987764 246899999999999999988862 2222211111
Q ss_pred CCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc-----ccCCChHHHHHHHHHcCCCceEEEEec
Q 005313 285 PKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM-----LDMGFEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 285 ~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m-----l~~gf~~~i~~il~~l~~~~q~L~lSA 359 (703)
.. .-..+..+.++|.+.+...+.. ...+.++++|||||||++ +.++|...+ ...+..|+|+|||
T Consensus 83 ~~-----~~t~~~~i~~~~~~~l~~~l~~-~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~-----~~~~~~~~il~SA 151 (459)
T 2z83_A 83 QR-----EHQGNEIVDVMCHATLTHRLMS-PNRVPNYNLFVMDEAHFTDPASIAARGYIATK-----VELGEAAAIFMTA 151 (459)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHS-CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHH-----HHTTSCEEEEECS
T ss_pred cc-----CCCCCcEEEEEchHHHHHHhhc-cccccCCcEEEEECCccCCchhhHHHHHHHHH-----hccCCccEEEEEc
Confidence 10 0112345788898888766554 355789999999999983 333322211 1236789999999
Q ss_pred cCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHH
Q 005313 360 TWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNL 439 (703)
Q Consensus 360 T~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L 439 (703)
|++..+..+... ..++.. +.......+...+..++... ..++||||++++.++.+++.|
T Consensus 152 T~~~~~~~~~~~--~~pi~~-----------------~~~~~~~~~~~~~~~~l~~~--~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPIHD-----------------LQDEIPDRAWSSGYEWITEY--AGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp SCTTCCCSSCCC--SSCEEE-----------------EECCCCSSCCSSCCHHHHHC--CSCEEEECSCHHHHHHHHHHH
T ss_pred CCCcchhhhccC--CCCeEE-----------------ecccCCcchhHHHHHHHHhc--CCCEEEEeCChHHHHHHHHHH
Confidence 998543221100 011110 00000111111122233333 469999999999999999999
Q ss_pred hc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE--------------------ecCCCC
Q 005313 440 TR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN--------------------YDFPTG 498 (703)
Q Consensus 440 ~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~--------------------~d~P~s 498 (703)
.+ .+.+..+|++ +|+.+++.|++|+++|||||+++++|||||+ ++||+ |+.|.+
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 84 6789999985 7888999999999999999999999999999 99999 779999
Q ss_pred HHHHHHHHhccCCCCC-ccEEEEEEecC
Q 005313 499 VEDYVHRIGRTGRAGA-TGVAYTFFGDQ 525 (703)
Q Consensus 499 ~~~yiQriGRagR~G~-~g~~i~~~~~~ 525 (703)
..+|+||+||+||.|+ +|.+++|+...
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999997 89999999875
No 55
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=295.59 Aligned_cols=229 Identities=33% Similarity=0.565 Sum_probs=197.6
Q ss_pred CHHHHHhcCCeEEcCCCCCCCCCCCcCC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHH
Q 005313 152 SSEAYRRRHEVTVSGDEVPPPFMSFDAT----GFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~p~p~~sf~~~----~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla 227 (703)
....+++++.+.+++...|.|+.+|+++ ++++.+++++.+.||..|+++|+++|+.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 3567899999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh-hhhcCCCcEEEECHHH
Q 005313 228 YLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL-KDIDRGVDIVVATPGR 306 (703)
Q Consensus 228 ~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~-~~l~~g~dIlV~Tp~~ 306 (703)
|++|++..+... ...++++|||+||++|+.|+.++++++....++.+.+++++....... .....+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~ 159 (245)
T 3dkp_A 83 FSIPILMQLKQP---ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNR 159 (245)
T ss_dssp HHHHHHHHHCSC---CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHH
T ss_pred HHHHHHHHHhhc---ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHH
Confidence 999999887542 223568999999999999999999999988888887776654322221 2234568999999999
Q ss_pred HHHHHHhc--cccccCcccEEEeccccccc---CCChHHHHHHHHHc-CCCceEEEEeccCcHHHHHHHHHhhcCceecc
Q 005313 307 LNDILEMR--RISLNQVSYLVLDEADRMLD---MGFEPQIRKIVKEV-PARRQTLMYTATWPREVRKIAADLLVNPVQVN 380 (703)
Q Consensus 307 L~~~l~~~--~~~l~~~~~IViDEaH~ml~---~gf~~~i~~il~~l-~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~ 380 (703)
|.+++... .+.+.++++|||||||++++ .+|...+..++..+ ++..|+++||||+++++.+++..++.+++.+.
T Consensus 160 l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~ 239 (245)
T 3dkp_A 160 LIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVS 239 (245)
T ss_dssp HHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEE
Confidence 99998765 46788999999999999988 57888888888776 45789999999999999999999999999887
Q ss_pred ccc
Q 005313 381 IGN 383 (703)
Q Consensus 381 i~~ 383 (703)
++.
T Consensus 240 ~~~ 242 (245)
T 3dkp_A 240 IGA 242 (245)
T ss_dssp ECC
T ss_pred eCC
Confidence 754
No 56
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.4e-34 Score=321.35 Aligned_cols=268 Identities=15% Similarity=0.135 Sum_probs=188.7
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCch
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 289 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~ 289 (703)
+++++|+++|||+|||++|+++++..+.. .++++|||+||++|+.|+.+.+. ++.+....+....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~--- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS--- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc---
Confidence 36899999999999999999999866543 24589999999999999988775 3344444443211
Q ss_pred hhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHH-cCCCceEEEEeccCcHHHHHH
Q 005313 290 LKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE-VPARRQTLMYTATWPREVRKI 368 (703)
Q Consensus 290 ~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~-l~~~~q~L~lSAT~p~~v~~l 368 (703)
....+..+.++|.+.+...+.. ...+.++++|||||+|++ +..+......+... .+...|+|+||||+++.+..+
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred --cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 1112345778899988766655 556889999999999997 43333444444433 256899999999998632111
Q ss_pred HHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeE
Q 005313 369 AADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAA 447 (703)
Q Consensus 369 ~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~ 447 (703)
. .. ...+.. +.......+...+...+... ..++||||+++++++.+++.|.+ .+.+..
T Consensus 142 ~----~~--------------~~~i~~-~~~~~~~~~~~~~~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 142 P----PS--------------NSPIID-EETRIPDKAWNSGYEWITEF--DGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp C----CC--------------SSCCEE-EECCCCSSCCSSCCHHHHSC--SSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred c----CC--------------CCceee-ccccCCHHHHHHHHHHHHcC--CCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 0 00 000100 00001111112223344433 46899999999999999999984 678999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccE-----------------EEEecCCCCHHHHHHHHhccC
Q 005313 448 IHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV-----------------VVNYDFPTGVEDYVHRIGRTG 510 (703)
Q Consensus 448 lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~-----------------VI~~d~P~s~~~yiQriGRag 510 (703)
+|++ +|+.+++.|++|+++|||||+++++|||+| +.+ ||+++.|.+..+|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 688899999999999999999999999999 544 688899999999999999999
Q ss_pred CCCC-ccEEEEEE
Q 005313 511 RAGA-TGVAYTFF 522 (703)
Q Consensus 511 R~G~-~g~~i~~~ 522 (703)
|.|+ .+.+++|.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985 44555554
No 57
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.4e-34 Score=348.20 Aligned_cols=334 Identities=18% Similarity=0.147 Sum_probs=229.9
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 195 SSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
..|+|||.+++..++.. .++|++++||+|||++++..+...+.... ..++|||||+ .|+.||.+++.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-----~~rvLIVvP~-sLl~Qw~~E~~~~f-- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-----AERVLIIVPE-TLQHQWLVEMLRRF-- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-----CCCEEEECCT-TTHHHHHHHHHHHS--
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-----CCeEEEEeCH-HHHHHHHHHHHHHh--
Confidence 47999999999998875 47899999999999998877766665422 2379999999 99999999997765
Q ss_pred CCceEEEeeCCCCCCchh--hhhcCCCcEEEECHHHHHHHHHh-ccccccCcccEEEecccccccCCCh--HHHHHHHHH
Q 005313 273 SRISCTCLYGGAPKGPQL--KDIDRGVDIVVATPGRLNDILEM-RRISLNQVSYLVLDEADRMLDMGFE--PQIRKIVKE 347 (703)
Q Consensus 273 ~~i~v~~~~gg~~~~~~~--~~l~~g~dIlV~Tp~~L~~~l~~-~~~~l~~~~~IViDEaH~ml~~gf~--~~i~~il~~ 347 (703)
++.+..+.+........ .......+|+|+|++.|...... ..+...++++|||||||++.+.... ..+..+...
T Consensus 224 -~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L 302 (968)
T 3dmq_A 224 -NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL 302 (968)
T ss_dssp -CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH
T ss_pred -CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHH
Confidence 34554444332111000 01122479999999998543211 2234557899999999999765432 223333333
Q ss_pred cCCCceEEEEeccCcH----HHHHH----------------------------HHHhhcC-c------------e-----
Q 005313 348 VPARRQTLMYTATWPR----EVRKI----------------------------AADLLVN-P------------V----- 377 (703)
Q Consensus 348 l~~~~q~L~lSAT~p~----~v~~l----------------------------~~~~l~~-~------------~----- 377 (703)
.....++|++|||+.. ++..+ +..++.. + +
T Consensus 303 ~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~ 382 (968)
T 3dmq_A 303 AEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDI 382 (968)
T ss_dssp HTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCS
T ss_pred hhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhh
Confidence 3345569999999732 01111 0001000 0 0
Q ss_pred ---ecccc-----------------------------cch-hhh--ccccceEEE-------------------------
Q 005313 378 ---QVNIG-----------------------------NVD-ELA--ANKAITQHI------------------------- 397 (703)
Q Consensus 378 ---~i~i~-----------------------------~~~-~~~--~~~~i~~~~------------------------- 397 (703)
...+. ... ... .........
T Consensus 383 ~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (968)
T 3dmq_A 383 EPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAED 462 (968)
T ss_dssp STTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGG
T ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHH
Confidence 00000 000 000 000000000
Q ss_pred --------------------EEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc--CCceeEecCCCCHH
Q 005313 398 --------------------EVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQS 455 (703)
Q Consensus 398 --------------------~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~--~~~~~~lhg~~~~~ 455 (703)
..+....|...|..+++. ..+.++||||++++.++.+++.|.+ ++.+..+||++++.
T Consensus 463 ~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 463 RARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 112233567778888877 4567999999999999999999984 78899999999999
Q ss_pred HHHHHHHHHhcCC--CcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHH
Q 005313 456 ERDYVLNQFRAGR--SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDL 533 (703)
Q Consensus 456 eR~~vl~~F~~G~--~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l 533 (703)
+|+.+++.|++++ ++|||||+++++|||+|++++||+||+|+++..|+|++||++|.|+.+.++++....+....+.+
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i 621 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVL 621 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHH
Confidence 9999999999998 99999999999999999999999999999999999999999999999877777655554455555
Q ss_pred HHHHH
Q 005313 534 IKLLE 538 (703)
Q Consensus 534 ~~~l~ 538 (703)
.+.+.
T Consensus 622 ~~~~~ 626 (968)
T 3dmq_A 622 VRWYH 626 (968)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=291.23 Aligned_cols=206 Identities=38% Similarity=0.595 Sum_probs=188.3
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 251 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLI 251 (703)
+..+|++++|++.++++|...||..|+++|+++|+.+++++++++++|||+|||++|++|++..+.... .++++||
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~----~~~~~li 116 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP----QRLFALV 116 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----CSSCEEE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC----CCceEEE
Confidence 467899999999999999999999999999999999999999999999999999999999998876532 2458999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHh-ccccccCcccEEEeccc
Q 005313 252 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-RRISLNQVSYLVLDEAD 330 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~-~~~~l~~~~~IViDEaH 330 (703)
|+||++|+.|+.++++++....++.+.+++|+.....+...+..+++|+|+||++|.+++.. ..+.+.++++|||||||
T Consensus 117 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 117 LTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp ECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 99999999999999999988888999999998877666677778899999999999998876 45678899999999999
Q ss_pred ccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceeccc
Q 005313 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNI 381 (703)
Q Consensus 331 ~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i 381 (703)
++++++|...+..++..+++.+|+|+||||++..+.+++..++.+|+.+.+
T Consensus 197 ~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 197 RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999987765
No 59
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.1e-33 Score=289.07 Aligned_cols=212 Identities=30% Similarity=0.487 Sum_probs=179.5
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCC
Q 005313 167 DEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLG 246 (703)
Q Consensus 167 ~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g 246 (703)
...++++.+|++++|++.++++|...||..|+++|.++|+.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----~~~ 98 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----FKE 98 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT----SCS
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----CCC
Confidence 4456788999999999999999999999999999999999999999999999999999999999998876532 124
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCC-CcEEEECHHHHHHHHHhccccccCcccEE
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLV 325 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g-~dIlV~Tp~~L~~~l~~~~~~l~~~~~IV 325 (703)
+++|||+||++|+.|+.+.++++....++.+..++++.....++..+..+ ++|+|+||++|.+++....+.+.++++||
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEE
Confidence 68999999999999999999999988888888899988777776666665 89999999999999988778888999999
Q ss_pred EecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccc
Q 005313 326 LDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382 (703)
Q Consensus 326 iDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~ 382 (703)
|||||++++++|...+..++..+++..|+|++|||++..+.+++..++.+|..+.+.
T Consensus 179 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 179 LDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred ECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999998877653
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.9e-33 Score=285.82 Aligned_cols=212 Identities=28% Similarity=0.523 Sum_probs=182.1
Q ss_pred cCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCC
Q 005313 165 SGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPR 244 (703)
Q Consensus 165 ~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~ 244 (703)
.++..|.+..+|+++++++.+++.|.+.||..|+++|.++|+.+++++++++++|||+|||++|++|++..+... .
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----~ 90 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----N 90 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT----S
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----C
Confidence 356677888999999999999999999999999999999999999999999999999999999999998876542 1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCccc
Q 005313 245 LGPTVLVLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 323 (703)
Q Consensus 245 ~g~~vLIl~PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~ 323 (703)
.++++|||+||++|+.|+.++++++.... ++.+.+++|+.....+...+ .+++|+|+||++|.+++....+.+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 24689999999999999999999998664 78888888887655544444 46899999999999999887788889999
Q ss_pred EEEecccccccCC-ChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceeccc
Q 005313 324 LVLDEADRMLDMG-FEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNI 381 (703)
Q Consensus 324 IViDEaH~ml~~g-f~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i 381 (703)
|||||||++++++ |...+..++..++...|+|+||||+++++.+++..++.++..+.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999997 999999999999999999999999999999999999988877654
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=284.78 Aligned_cols=212 Identities=35% Similarity=0.525 Sum_probs=187.4
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEE
Q 005313 170 PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTV 249 (703)
Q Consensus 170 p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~v 249 (703)
+.++.+|+++++++.+++.|.+.+|..|+++|.++++.+++++++++++|||+|||++|++|++..+.........++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 45678899999999999999999999999999999999999999999999999999999999998876533222335689
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc-cccccCcccEEEec
Q 005313 250 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDE 328 (703)
Q Consensus 250 LIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~-~~~l~~~~~IViDE 328 (703)
|||+||++|+.|+.++++++....++.+.+++|+.........+ .+++|+|+||++|.+.+... .+.+.++++|||||
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999988889999999988766555544 46899999999999988764 46678899999999
Q ss_pred ccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccc
Q 005313 329 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382 (703)
Q Consensus 329 aH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~ 382 (703)
||++++++|...+..++..+++.+|+|+||||+++.+.+++..++.+|..+.+.
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999877653
No 62
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.6e-33 Score=277.20 Aligned_cols=202 Identities=34% Similarity=0.565 Sum_probs=183.7
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 174 ~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
.+|++++|++++++.+.+.||..|+++|+++++.+++++++++++|||+|||++|++|++..+... ..++++|||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----~~~~~~lil~ 78 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK----KDNIQAMVIV 78 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT----SCSCCEEEEC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc----CCCeeEEEEe
Confidence 469999999999999999999999999999999999999999999999999999999998876432 1246899999
Q ss_pred CcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313 254 PTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 254 PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
|+++|+.|+.+.++++.... ++.+.+++|+.........+..+++|+|+||++|.+.+......+.++++|||||||++
T Consensus 79 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 79 PTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp SCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHh
Confidence 99999999999999998776 78888888888776666677778999999999999999887788899999999999999
Q ss_pred ccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceec
Q 005313 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQV 379 (703)
Q Consensus 333 l~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i 379 (703)
++++|...+..++..+++..|+|+||||++..+.+++..++.+|..+
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999999999999999999999888754
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-33 Score=284.48 Aligned_cols=207 Identities=35% Similarity=0.556 Sum_probs=185.0
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 251 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLI 251 (703)
+..+|++++|++.+++++.+.||..|+++|+++++.+++++++++++|||+|||++|++|++..+... ..++++||
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~----~~~~~~li 77 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE----RAEVQAVI 77 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT----SCSCCEEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC----cCCceEEE
Confidence 34679999999999999999999999999999999999999999999999999999999998887542 12468999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCC----CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEe
Q 005313 252 LSPTRELATQIQDEAVKFGKSS----RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~~~----~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViD 327 (703)
|+||++|+.|+.++++++.... ++.+.+++|+.........+..+++|+|+||++|.+++....+.+.++++||||
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 9999999999999999988765 678888888876655555566678999999999999998877888999999999
Q ss_pred cccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccc
Q 005313 328 EADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382 (703)
Q Consensus 328 EaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~ 382 (703)
|||++.+++|...+..++..+++..|+|++|||++.++.+++..++.+|..+.+.
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 9999999999999999999999999999999999999999999999999877654
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=7.2e-33 Score=279.61 Aligned_cols=211 Identities=30% Similarity=0.504 Sum_probs=182.8
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCC
Q 005313 167 DEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLG 246 (703)
Q Consensus 167 ~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g 246 (703)
...++++.+|+++++++.+++.+.+.||..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~----~~~ 82 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----VKA 82 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT----CCS
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc----CCC
Confidence 3456778999999999999999999999999999999999999999999999999999999999998877442 124
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEE
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVL 326 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IVi 326 (703)
+++|||+|+++|+.|+.+.++++....++.+..++|+.........+.. ++|+|+||++|.+.+......+.++++|||
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 6899999999999999999999988888999999988876655555444 899999999999999888888899999999
Q ss_pred ecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccc
Q 005313 327 DEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382 (703)
Q Consensus 327 DEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~ 382 (703)
||||++.+++|...+..++..+++..|+|+||||++..+.+++..++.+++.+.+.
T Consensus 162 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 162 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred cChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999887664
No 65
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=6e-33 Score=293.71 Aligned_cols=217 Identities=28% Similarity=0.441 Sum_probs=187.6
Q ss_pred cCCeEEcCCCCCCC---CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHH
Q 005313 159 RHEVTVSGDEVPPP---FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGF 233 (703)
Q Consensus 159 ~~~i~~~~~~~p~p---~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l 233 (703)
.+.+.+.+...+.| +.+|++++|++.++++|..+||..|+++|.++|+.++.+ +|+|++||||+|||++|++|++
T Consensus 74 ~~~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l 153 (300)
T 3fmo_B 74 TNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153 (300)
T ss_dssp CSCEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHH
Confidence 45566666555554 578999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHH
Q 005313 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE 312 (703)
Q Consensus 234 ~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~ 312 (703)
..+... ..++++|||+||++|+.|+++.++++.... ++.+.+++++...... ....++|+|+||++|.+++.
T Consensus 154 ~~l~~~----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~ 226 (300)
T 3fmo_B 154 SQVEPA----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 226 (300)
T ss_dssp HHCCTT----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHT
T ss_pred Hhhhcc----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHH
Confidence 887542 235689999999999999999999998754 5778888877654332 24468999999999999996
Q ss_pred h-ccccccCcccEEEeccccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccc
Q 005313 313 M-RRISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382 (703)
Q Consensus 313 ~-~~~~l~~~~~IViDEaH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~ 382 (703)
. ..+.+.++++|||||||+|++ .+|...+..|+..+++.+|+|+||||++..+..++..++.+|..+.+.
T Consensus 227 ~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 227 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp TTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred hcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 5 567789999999999999998 789999999999999999999999999999999999999999887653
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.1e-32 Score=274.40 Aligned_cols=204 Identities=40% Similarity=0.676 Sum_probs=184.0
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 175 sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
+|++++|++++++.+.+.+|..|+++|+++++.+++++++++++|||+|||++|+++++..+..... ...++++||++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-RGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-TTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCcEEEEEC
Confidence 6889999999999999999999999999999999999999999999999999999999888754221 123578999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccccc
Q 005313 255 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 334 (703)
Q Consensus 255 treLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~ 334 (703)
+++|+.|+.++++++... +.+..++|+.....+...+..+++|+|+||++|.+++....+.+.++++|||||||++++
T Consensus 81 ~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 81 TRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp SHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 999999999999999765 677888888877667677777899999999999999988888889999999999999999
Q ss_pred CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceeccc
Q 005313 335 MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNI 381 (703)
Q Consensus 335 ~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i 381 (703)
++|...+..++..+++..|+|++|||++..+.+++..++.+|..+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999999887654
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.5e-33 Score=287.27 Aligned_cols=203 Identities=37% Similarity=0.583 Sum_probs=180.3
Q ss_pred CCCcCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 005313 174 MSFDATG--FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 251 (703)
Q Consensus 174 ~sf~~~~--l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLI 251 (703)
.+|++++ +++.+++.|...||..|+++|.++|+.++.++++|+++|||+|||++|++|++..+.........++++||
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 3455555 99999999999999999999999999999999999999999999999999999988764433334678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhc-cccccCcccEEEeccc
Q 005313 252 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEAD 330 (703)
Q Consensus 252 l~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~-~~~l~~~~~IViDEaH 330 (703)
|+||++|+.|+++.++++....++.+.+++|+.....+...+..+++|+|+||++|.+++... .+.+.++++|||||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 999999999999999999998889999999998877777777778999999999999988765 3678899999999999
Q ss_pred ccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCc
Q 005313 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNP 376 (703)
Q Consensus 331 ~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~ 376 (703)
+|++++|...+..++..++..+|+|+||||+++.+.++++.++.++
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999998887654
No 68
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.5e-32 Score=318.52 Aligned_cols=272 Identities=19% Similarity=0.188 Sum_probs=200.6
Q ss_pred HHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCC
Q 005313 206 PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAP 285 (703)
Q Consensus 206 ~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~ 285 (703)
...++++++|++||||+|||+. ++..+... ...||++||++||.|+++.+++. ++.+..++|+..
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~----al~~l~~~-------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~ 214 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYH----AIQKYFSA-------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEER 214 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHH----HHHHHHHS-------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCE
T ss_pred HHhcCCCEEEEEcCCCCCHHHH----HHHHHHhc-------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCee
Confidence 4456788999999999999973 33333331 24599999999999999999886 567778888754
Q ss_pred CCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcC-CCceEEEEeccCcHH
Q 005313 286 KGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP-ARRQTLMYTATWPRE 364 (703)
Q Consensus 286 ~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~-~~~q~L~lSAT~p~~ 364 (703)
... ....+..+++++|++.+. ....+++|||||||++++.++...+..++..++ ...+++++|||.+ .
T Consensus 215 ~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~ 283 (677)
T 3rc3_A 215 VTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-L 283 (677)
T ss_dssp ECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-H
T ss_pred EEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-H
Confidence 310 011123679999986542 246789999999999999999999999999888 7889999999943 3
Q ss_pred HHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CC
Q 005313 365 VRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QF 443 (703)
Q Consensus 365 v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~ 443 (703)
+..++... ...+.+.. .. . ..... ..... + ..+... ....||||+++++++.+++.|.+ .+
T Consensus 284 i~~l~~~~-~~~~~v~~--~~---r--~~~l~--~~~~~-----l-~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 284 VMELMYTT-GEEVEVRD--YK---R--LTPIS--VLDHA-----L-ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp HHHHHHHH-TCCEEEEE--CC---C--SSCEE--ECSSC-----C-CSGGGC--CTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc-CCceEEEE--ee---e--cchHH--HHHHH-----H-HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 44443332 22222211 00 0 00000 00000 0 011112 23458899999999999999984 67
Q ss_pred ceeEecCCCCHHHHHHHHHHHhc--CCCcEEEEcccccccCCCCCccEEEEecC--------------CCCHHHHHHHHh
Q 005313 444 GAAAIHGDKSQSERDYVLNQFRA--GRSPVLVATDVAARGLDIKDIRVVVNYDF--------------PTGVEDYVHRIG 507 (703)
Q Consensus 444 ~~~~lhg~~~~~eR~~vl~~F~~--G~~~ILVaTdv~~~GIDIp~v~~VI~~d~--------------P~s~~~yiQriG 507 (703)
.+..+||+|++++|+.+++.|++ |+++|||||+++++|||+ ++++||++++ |.+..+|+||+|
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~G 424 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAG 424 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHT
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhc
Confidence 89999999999999999999999 899999999999999999 9999999999 789999999999
Q ss_pred ccCCCCCc---cEEEEEE
Q 005313 508 RTGRAGAT---GVAYTFF 522 (703)
Q Consensus 508 RagR~G~~---g~~i~~~ 522 (703)
|+||.|+. |.|+.++
T Consensus 425 RAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 425 RAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp TBTCTTSSCSSEEEEESS
T ss_pred CCCCCCCCCCCEEEEEEe
Confidence 99999965 5555543
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.3e-31 Score=306.75 Aligned_cols=331 Identities=17% Similarity=0.201 Sum_probs=223.2
Q ss_pred CCcHHHHHHHHHHH---------cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005313 196 SPTPIQAQSWPIAL---------QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 266 (703)
Q Consensus 196 ~p~piQ~~ai~~il---------~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~ 266 (703)
.|+|||.+++..+. .++..|++.+||+|||++++..+...+...........++|||||+ .|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999999875 3457899999999999988776665554432211123469999997 8999999999
Q ss_pred HHhcCCCCceEEEeeCCCCCCc--hhhhh-c-----CCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCCh
Q 005313 267 VKFGKSSRISCTCLYGGAPKGP--QLKDI-D-----RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 338 (703)
Q Consensus 267 ~k~~~~~~i~v~~~~gg~~~~~--~~~~l-~-----~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~ 338 (703)
.++... .+.++.++++..... .+... . ..++|+|+|++.|..... .+....+++|||||||++.+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~-- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC--
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh--
Confidence 999765 455666666543211 11111 1 137899999999975432 3344578999999999986543
Q ss_pred HHHHHHHHHcCCCceEEEEeccCcHHH----H------------------------------------------------
Q 005313 339 PQIRKIVKEVPARRQTLMYTATWPREV----R------------------------------------------------ 366 (703)
Q Consensus 339 ~~i~~il~~l~~~~q~L~lSAT~p~~v----~------------------------------------------------ 366 (703)
....+.+..+.. ...|++|||+-.+. .
T Consensus 209 ~~~~~al~~l~~-~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 209 NQTYLALNSMNA-QRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp HHHHHHHHHHCC-SEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccc-CcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 333444445543 45799999973210 0
Q ss_pred -HHHHHhhcCceecccccchhhhccccceEEEEE----------------------------------------------
Q 005313 367 -KIAADLLVNPVQVNIGNVDELAANKAITQHIEV---------------------------------------------- 399 (703)
Q Consensus 367 -~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~---------------------------------------------- 399 (703)
.++..++.....-.+. ..++ ......+.+
T Consensus 288 ~~~l~~~~lRR~k~~v~--~~LP--~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp 363 (644)
T 1z3i_X 288 ISIVNRCLIRRTSDILS--KYLP--VKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHP 363 (644)
T ss_dssp HHHHHHHEECCCGGGGG--GTSC--CEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhhHHhHh--hhCC--CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCH
Confidence 0000010000000000 0000 000000000
Q ss_pred -------------------------------eccchhHHHHHHHHHhc--CCCCeEEEEcCCHHHHHHHHHHHh-cCCce
Q 005313 400 -------------------------------LAPMDKHRRLEQILRSQ--EPGSKIIVFCSTKKMCDQLARNLT-RQFGA 445 (703)
Q Consensus 400 -------------------------------~~~~~k~~~L~~ll~~~--~~~~kvLVF~~s~~~a~~la~~L~-~~~~~ 445 (703)
.....|...|..++... ..+.++||||+++..++.++..|. .++.+
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~ 443 (644)
T 1z3i_X 364 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLY 443 (644)
T ss_dssp HHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCE
Confidence 00122334444444433 246799999999999999999997 57889
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCc---EEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEE
Q 005313 446 AAIHGDKSQSERDYVLNQFRAGRSP---VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFF 522 (703)
Q Consensus 446 ~~lhg~~~~~eR~~vl~~F~~G~~~---ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~ 522 (703)
..+||+++.++|..+++.|+++... |||+|+++++|||++.+++||+||+||++..|.|++||++|.|+...++++.
T Consensus 444 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 444 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp EEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 9999999999999999999998764 8999999999999999999999999999999999999999999877666554
Q ss_pred ecCChHHHHHHHHHH
Q 005313 523 GDQDSRYASDLIKLL 537 (703)
Q Consensus 523 ~~~d~~~~~~l~~~l 537 (703)
.-....+.+++.+.+
T Consensus 524 lv~~~tiEe~i~~~~ 538 (644)
T 1z3i_X 524 LLSTGTIEEKILQRQ 538 (644)
T ss_dssp EEETTSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHH
Confidence 433334445555444
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3e-32 Score=274.46 Aligned_cols=206 Identities=29% Similarity=0.517 Sum_probs=180.3
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 005313 171 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVL 250 (703)
Q Consensus 171 ~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vL 250 (703)
....+|++++|++.++++|...+|..|+++|.++++.+++++++++++|||+|||++|+++++..+... ..++++|
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~----~~~~~~l 86 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV----TGQVSVL 86 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC----TTCCCEE
T ss_pred ccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc----CCCEEEE
Confidence 344679999999999999999999999999999999999999999999999999999999998876432 1245899
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCC-CceEEEeeCCCCCCchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEEEec
Q 005313 251 VLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDE 328 (703)
Q Consensus 251 Il~PtreLa~Q~~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDE 328 (703)
||+||++|+.|+.++++++.... ++.+.+++|+.....+...+.. .++|+|+||++|.+++....+.+.++++|||||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 87 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 99999999999999999998765 7888888888776655555554 479999999999999988778889999999999
Q ss_pred cccccc-CCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecc
Q 005313 329 ADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVN 380 (703)
Q Consensus 329 aH~ml~-~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~ 380 (703)
||++++ .+|...+..++..+++..|+|++|||++..+.+++..++.+|..+.
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999987 5788889999999999999999999999999999999999887664
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.2e-31 Score=314.10 Aligned_cols=335 Identities=14% Similarity=0.211 Sum_probs=232.2
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 195 SSPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 195 ~~p~piQ~~ai~~il----~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
.+|+|||.+++..++ .+++.|++++||+|||++++..+...+..... ..++||||| ..|+.||.+++.+++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~----~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ----NGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC----CSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC----CCCEEEEEC-chHHHHHHHHHHHHC
Confidence 479999999998776 77899999999999999876655444333211 236899999 688999999999997
Q ss_pred CCCCceEEEeeCCCCCCchhhh------------hcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCCh
Q 005313 271 KSSRISCTCLYGGAPKGPQLKD------------IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 338 (703)
Q Consensus 271 ~~~~i~v~~~~gg~~~~~~~~~------------l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~ 338 (703)
. .+.+.+++|.......+.. ....++|+|+|++.+..... .+....+++|||||||++.+. .
T Consensus 310 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~--~ 383 (800)
T 3mwy_W 310 P--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNA--E 383 (800)
T ss_dssp T--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCS--S
T ss_pred C--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCc--h
Confidence 4 4666667766543332222 12347899999999976433 222346789999999998654 3
Q ss_pred HHHHHHHHHcCCCceEEEEeccCc----HHHHHHHHHhhc-----------------------------Cceecccccch
Q 005313 339 PQIRKIVKEVPARRQTLMYTATWP----REVRKIAADLLV-----------------------------NPVQVNIGNVD 385 (703)
Q Consensus 339 ~~i~~il~~l~~~~q~L~lSAT~p----~~v~~l~~~~l~-----------------------------~~~~i~i~~~~ 385 (703)
..+...+..+. ....|++|||+- .++..++.-+.. .++.+.....+
T Consensus 384 s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 34455555554 345688999972 222222211110 01100000000
Q ss_pred hhh-ccccceEEEEE-----------------------------------------------------------------
Q 005313 386 ELA-ANKAITQHIEV----------------------------------------------------------------- 399 (703)
Q Consensus 386 ~~~-~~~~i~~~~~~----------------------------------------------------------------- 399 (703)
... ........+.+
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 000 00000000000
Q ss_pred ---------eccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCC
Q 005313 400 ---------LAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGR 468 (703)
Q Consensus 400 ---------~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~ 468 (703)
+....|...|..++... ..+.++||||.....++.|+..|. .++.+..+||.++..+|..+++.|+++.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 01123555566666654 456899999999999999999997 5788999999999999999999999865
Q ss_pred C---cEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhcc
Q 005313 469 S---PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAK 541 (703)
Q Consensus 469 ~---~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~ 541 (703)
. .|||+|.++++|||++.+++||+||++||+..++|++||++|.|+...+.++..-....+.+.+.+.+....
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 5 499999999999999999999999999999999999999999998877766655555556666666665443
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=1.1e-29 Score=305.97 Aligned_cols=312 Identities=16% Similarity=0.158 Sum_probs=208.4
Q ss_pred CCCcHHHHHHHHHHHc--------------CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHH
Q 005313 195 SSPTPIQAQSWPIALQ--------------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 260 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~--------------grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~ 260 (703)
..|+|||.+|++.++. ++++|++++||||||+++ ++++..+... ....++|||||+++|+.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~----~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL----DFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC----TTCCEEEEEECGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc----CCCceEEEEeCcHHHHH
Confidence 4699999999999876 368999999999999997 4555444321 12359999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhc-CCCcEEEECHHHHHHHHHhcc--ccccCcccEEEecccccccCCC
Q 005313 261 QIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID-RGVDIVVATPGRLNDILEMRR--ISLNQVSYLVLDEADRMLDMGF 337 (703)
Q Consensus 261 Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~-~g~dIlV~Tp~~L~~~l~~~~--~~l~~~~~IViDEaH~ml~~gf 337 (703)
|+.+++.++... .+.++.........+. ...+|+|+|+++|.+++.... ..+..+.+|||||||++..
T Consensus 345 Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--- 415 (1038)
T 2w00_A 345 QTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--- 415 (1038)
T ss_dssp HHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---
T ss_pred HHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---
Confidence 999999988653 1233333333334443 468999999999998876432 2356788999999999863
Q ss_pred hHHHHHHHHHcCCCceEEEEeccCcHHHH----HHHHHhhcC-----------------ceeccccc----chhhhcc--
Q 005313 338 EPQIRKIVKEVPARRQTLMYTATWPREVR----KIAADLLVN-----------------PVQVNIGN----VDELAAN-- 390 (703)
Q Consensus 338 ~~~i~~il~~l~~~~q~L~lSAT~p~~v~----~l~~~~l~~-----------------~~~i~i~~----~~~~~~~-- 390 (703)
...+..|+..++ +.++|+||||+..... .....++.. ++.+.... .......
T Consensus 416 ~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 416 GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCC
T ss_pred hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccccc
Confidence 234566777775 4789999999864321 111122222 12111100 0000000
Q ss_pred ----ccceEEEEEeccchhHHH-HHHHHHhc----------CCCCeEEEEcCCHHHHHHHHHHHhcC-------------
Q 005313 391 ----KAITQHIEVLAPMDKHRR-LEQILRSQ----------EPGSKIIVFCSTKKMCDQLARNLTRQ------------- 442 (703)
Q Consensus 391 ----~~i~~~~~~~~~~~k~~~-L~~ll~~~----------~~~~kvLVF~~s~~~a~~la~~L~~~------------- 442 (703)
..+.+. ..+....+... +..++... ..+.++||||.++++|..+++.|.+.
T Consensus 495 ~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~ 573 (1038)
T 2w00_A 495 EKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKP 573 (1038)
T ss_dssp HHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccccc
Confidence 000000 00011112222 22233321 13468999999999999999988642
Q ss_pred Cce-eEecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEE
Q 005313 443 FGA-AAIHGD----------K----------SQ-----------------------------SERDYVLNQFRAGRSPVL 472 (703)
Q Consensus 443 ~~~-~~lhg~----------~----------~~-----------------------------~eR~~vl~~F~~G~~~IL 472 (703)
+.+ .++|++ + ++ .+|..++++|++++++||
T Consensus 574 ~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~IL 653 (1038)
T 2w00_A 574 LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLL 653 (1038)
T ss_dssp CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 344 445542 2 22 248889999999999999
Q ss_pred EEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCc----cEEEEEEe
Q 005313 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGAT----GVAYTFFG 523 (703)
Q Consensus 473 VaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~----g~~i~~~~ 523 (703)
|+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 654 Ivvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 654 IVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999 678999999999999999999998753 55555553
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=5.8e-29 Score=281.70 Aligned_cols=317 Identities=18% Similarity=0.170 Sum_probs=231.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..|+++|....-.+.+|+ |+.+.||.|||+++.+|++..... |..|.||+|++.||.|-.+++..+...++
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-------G~~vhVvT~ndyLA~rdae~m~~l~~~Lg 144 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-------GKGVHLVTVNDYLARRDALWMGPVYLFLG 144 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-------SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-------CCceEEEeccHHHHHhHHHHHHHHHHHhC
Confidence 378999999998888877 888999999999999998766544 45799999999999999999999999999
Q ss_pred ceEEEeeCCC------------------------------------------------CCCchhhhhcCCCcEEEECHHH
Q 005313 275 ISCTCLYGGA------------------------------------------------PKGPQLKDIDRGVDIVVATPGR 306 (703)
Q Consensus 275 i~v~~~~gg~------------------------------------------------~~~~~~~~l~~g~dIlV~Tp~~ 306 (703)
+.+.+++... ......+...-.|||+++|..-
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~E 224 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNE 224 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcc
Confidence 9999988721 0011111112238999999987
Q ss_pred H-HHHHHhcc------ccccCcccEEEecccccc-cC--------------------------------C----------
Q 005313 307 L-NDILEMRR------ISLNQVSYLVLDEADRML-DM--------------------------------G---------- 336 (703)
Q Consensus 307 L-~~~l~~~~------~~l~~~~~IViDEaH~ml-~~--------------------------------g---------- 336 (703)
| .|+|..+. .....+.+.||||+|.+| |. .
T Consensus 225 fgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v 304 (822)
T 3jux_A 225 FGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTI 304 (822)
T ss_dssp HHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCE
T ss_pred hhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeE
Confidence 7 56666432 223568899999999543 00 0
Q ss_pred -------------------Ch----HHHHHHHHH------cCC-------------------------------------
Q 005313 337 -------------------FE----PQIRKIVKE------VPA------------------------------------- 350 (703)
Q Consensus 337 -------------------f~----~~i~~il~~------l~~------------------------------------- 350 (703)
|. ..+..+... +..
T Consensus 305 ~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEa 384 (822)
T 3jux_A 305 ILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEA 384 (822)
T ss_dssp EECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHH
T ss_pred EECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHH
Confidence 00 000001000 000
Q ss_pred ------------------------CceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceE-EEEEeccchh
Q 005313 351 ------------------------RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ-HIEVLAPMDK 405 (703)
Q Consensus 351 ------------------------~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~-~~~~~~~~~k 405 (703)
-.++.+||+|...+..++...|-.+ .+.+..... ...+.+ ........+|
T Consensus 385 KEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnkp---~~R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 385 KEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHKP---MIRKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSSC---CCCEECCCEEESSHHHH
T ss_pred HcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCCC---cceeecCcEEEecHHHH
Confidence 1268899999987766665555333 222221111 111111 2345566778
Q ss_pred HHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCC
Q 005313 406 HRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLD 483 (703)
Q Consensus 406 ~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GID 483 (703)
...|...+... ..+.++||||+|++.++.+++.|.+ ++++.++|++..+.++..+..+++.| .|+|||++++||+|
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtD 537 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTD 537 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcC
Confidence 88888777654 4567999999999999999999984 78999999996666666666667665 69999999999999
Q ss_pred CC--------CccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCCh
Q 005313 484 IK--------DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 527 (703)
Q Consensus 484 Ip--------~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~ 527 (703)
|+ +..+||++++|.+...|+||+||+||.|.+|.+++|++..|.
T Consensus 538 I~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 538 IKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred ccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 98 566999999999999999999999999999999999998774
No 74
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=4.4e-26 Score=223.94 Aligned_cols=167 Identities=44% Similarity=0.721 Sum_probs=141.8
Q ss_pred hccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhc
Q 005313 388 AANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRA 466 (703)
Q Consensus 388 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~ 466 (703)
.....+.+.+..+....|...|.++++...++.++||||++++.++.+++.|. ..+.+..+||++++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 34567889999999999999999999987677899999999999999999997 46889999999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccH
Q 005313 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPR 546 (703)
Q Consensus 467 G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~ 546 (703)
|+++|||||+++++|||+|++++||+||+|+++.+|+||+||++|.|+.|.|++|+++.+...+.++.+.+....+.++.
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 005313 547 ELRDMASR 554 (703)
Q Consensus 547 ~L~~la~r 554 (703)
+|.+++.+
T Consensus 175 ~l~~~a~~ 182 (185)
T 2jgn_A 175 WLENMAYE 182 (185)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99999853
No 75
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.4e-26 Score=224.44 Aligned_cols=178 Identities=38% Similarity=0.565 Sum_probs=146.1
Q ss_pred HhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEec
Q 005313 371 DLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIH 449 (703)
Q Consensus 371 ~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lh 449 (703)
.++.+|..+.+.... .....+.+.+..+....|...|..++... ..++||||++++.++.+++.|. ..+.+..+|
T Consensus 10 ~~~~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 10 GVDLGTENLYFQSMG--AASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cccCCCEEEEECCCC--CCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 467778777775543 34557888888898899999999988764 3589999999999999999997 478899999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecC-ChH
Q 005313 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ-DSR 528 (703)
Q Consensus 450 g~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~-d~~ 528 (703)
|++++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|+++++|+||+||++|.|++|.+++|++.. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876 778
Q ss_pred HHHHHHHHHHhccCcccHHHHHHH
Q 005313 529 YASDLIKLLEGAKQQVPRELRDMA 552 (703)
Q Consensus 529 ~~~~l~~~l~~~~~~v~~~L~~la 552 (703)
+...+.++++...+.+|.+|.+++
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHHHccCcCCHHHHhhc
Confidence 889999999999999999988764
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=9e-25 Score=251.64 Aligned_cols=130 Identities=22% Similarity=0.233 Sum_probs=113.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 192 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 192 ~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
.|+ .|+++|..+++.+++|+ |+.+.||+|||++|++|++..... +..++||+||++||.|.++++..+..
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-------G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-------GKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-------CSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-------CCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 588 99999999999999998 899999999999999999655433 34799999999999999999999999
Q ss_pred CCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHH-HHHHHhcc------cccc---CcccEEEecccccc
Q 005313 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLN---QVSYLVLDEADRML 333 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L-~~~l~~~~------~~l~---~~~~IViDEaH~ml 333 (703)
.+++.+.+++|+.. .+.+....+++|+|+||+.| ++++..+. +.+. .+.++||||+|.|+
T Consensus 146 ~lGLsv~~i~Gg~~--~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 146 GLGLSVGVIQHAST--PAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTTCCEEECCTTCC--HHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred hcCCeEEEEeCCCC--HHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999875 34444555799999999999 89888653 4566 89999999999987
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=1.7e-25 Score=260.59 Aligned_cols=174 Identities=19% Similarity=0.234 Sum_probs=129.6
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHHH-hcCCCCeEEEEcCC
Q 005313 350 ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILR-SQEPGSKIIVFCST 428 (703)
Q Consensus 350 ~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~-~~~~~~kvLVF~~s 428 (703)
...|++++|||++...... ........+... .+ ....+.+.....+...|...+. ....+.++||||++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~-~l-----~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t 448 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPT-GL-----LDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLT 448 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTT-CC-----CCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccC-CC-----CCCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3578999999998654221 011111111110 00 0111222333344444444443 33456799999999
Q ss_pred HHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecC-----CCCHHHH
Q 005313 429 KKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF-----PTGVEDY 502 (703)
Q Consensus 429 ~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~-----P~s~~~y 502 (703)
++.++.+++.|.+ ++.+..+|+++++.+|..+++.|++|+++|||||+++++|||+|++++||++|. |.+...|
T Consensus 449 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~ 528 (664)
T 1c4o_A 449 VRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 528 (664)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHH
T ss_pred HHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHH
Confidence 9999999999984 678999999999999999999999999999999999999999999999999997 8999999
Q ss_pred HHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 503 VHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 503 iQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
+||+||+||.+ .|.|++|++..+......+.
T Consensus 529 iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 529 IQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 99999999994 79999999887765444433
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=8.9e-25 Score=254.40 Aligned_cols=174 Identities=21% Similarity=0.235 Sum_probs=131.0
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHHHH-HhcCCCCeEEEEcCC
Q 005313 350 ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCST 428 (703)
Q Consensus 350 ~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll-~~~~~~~kvLVF~~s 428 (703)
...|++++|||++....... .......+... .. ....+.+.....+...|...+ +....+.++||||++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~-~l-----~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t 454 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DEMVEQIIRPT-GL-----LDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLT 454 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SSCEEECCCTT-CC-----CCCEEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred cCCCEEEEecCCChhHHHhh----hCeeeeeeccc-CC-----CCCeEEEecccchHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46799999999976542221 11111111110 00 011122233333444444444 344567899999999
Q ss_pred HHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecC-----CCCHHHH
Q 005313 429 KKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF-----PTGVEDY 502 (703)
Q Consensus 429 ~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~-----P~s~~~y 502 (703)
++.++.+++.|.+ ++.+..+|+++++.+|..+++.|++|+++|||||+++++|||+|++++||++|. |.+...|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~ 534 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 534 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHH
Confidence 9999999999985 688999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHHhccCCCCCccEEEEEEecCChHHHHHHH
Q 005313 503 VHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 534 (703)
Q Consensus 503 iQriGRagR~G~~g~~i~~~~~~d~~~~~~l~ 534 (703)
+||+||+||. ..|.|++|+++.+......+.
T Consensus 535 iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 535 IQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 9999999998 789999999887765544433
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=4.8e-24 Score=204.89 Aligned_cols=149 Identities=38% Similarity=0.627 Sum_probs=137.0
Q ss_pred cccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCC
Q 005313 390 NKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGR 468 (703)
Q Consensus 390 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~ 468 (703)
...+.+.+..+....|...|..+++... ..++||||++++.++.+++.|.+ .+.+..+|+++++.+|..+++.|++|+
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTEN-PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcC-CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 3457888888889999999999998764 46999999999999999999974 688999999999999999999999999
Q ss_pred CcEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHh
Q 005313 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 539 (703)
Q Consensus 469 ~~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~ 539 (703)
++|||||+++++|||+|++++||+||+|+++.+|+||+||++|.|+.|.+++|+.+.+...+.++.+.+..
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 156 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTS
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999988888887776643
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=4.1e-24 Score=207.33 Aligned_cols=159 Identities=32% Similarity=0.533 Sum_probs=137.9
Q ss_pred ccceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCC
Q 005313 391 KAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRS 469 (703)
Q Consensus 391 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~ 469 (703)
..+.+++..+....|...|..+++... ..++||||++++.++.+++.|.+ .+.+..+|+++++.+|..+++.|++|++
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLE-FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSC-CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCC-CCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 357788888888999999999998764 56999999999999999999974 7889999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecC-ChHHHHHHHHHHHhccCcccHHH
Q 005313 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPREL 548 (703)
Q Consensus 470 ~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~-d~~~~~~l~~~l~~~~~~v~~~L 548 (703)
+|||||+++++|||+|++++||+||+|+++.+|+||+||++|.|+.|.+++|+.+. +......+.+.+......++.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999865 45566777777666556666654
Q ss_pred HH
Q 005313 549 RD 550 (703)
Q Consensus 549 ~~ 550 (703)
..
T Consensus 163 ~~ 164 (172)
T 1t5i_A 163 DI 164 (172)
T ss_dssp --
T ss_pred ch
Confidence 33
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=1.9e-24 Score=208.05 Aligned_cols=155 Identities=34% Similarity=0.640 Sum_probs=133.9
Q ss_pred cceEEEEEeccch-hHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCC
Q 005313 392 AITQHIEVLAPMD-KHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRS 469 (703)
Q Consensus 392 ~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~ 469 (703)
.+.+.+..+...+ |...|..+++.. ...++||||++++.++.++..|.+ .+.+..+|+++++.+|..+++.|++|++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4667777777766 999999999876 457999999999999999999974 6889999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHH
Q 005313 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRE 547 (703)
Q Consensus 470 ~ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~ 547 (703)
+|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|+.|.|++|+.+.+......+.+++....+.++..
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 999999999999999999999999999999999999999999999999999999999888888887776655555543
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=203.41 Aligned_cols=150 Identities=29% Similarity=0.523 Sum_probs=130.8
Q ss_pred ccceEEEEEeccch-hHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCC
Q 005313 391 KAITQHIEVLAPMD-KHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGR 468 (703)
Q Consensus 391 ~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~ 468 (703)
..+.+.+..+...+ |...|..+++.. ...++||||++++.++.++..|.+ .+.+..+||++++.+|..+++.|++|+
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 45778887777655 889999888775 456999999999999999999984 678999999999999999999999999
Q ss_pred CcEEEEcccccccCCCCCccEEEEecCC------CCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhcc
Q 005313 469 SPVLVATDVAARGLDIKDIRVVVNYDFP------TGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAK 541 (703)
Q Consensus 469 ~~ILVaTdv~~~GIDIp~v~~VI~~d~P------~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~ 541 (703)
++|||||+++++|||+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+...+...+..+.+.+....
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999 899999999999999999999999999988887777777765433
No 83
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=209.38 Aligned_cols=166 Identities=22% Similarity=0.203 Sum_probs=123.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHH-HHHHHHHhcC
Q 005313 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQ-IQDEAVKFGK 271 (703)
Q Consensus 193 g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q-~~~~~~k~~~ 271 (703)
....|+++|.++++.+++++++++++|||+|||++++++++..+...... ..+.++|||+|+++|+.| +.+++.++..
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-SEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-cCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999999988776543211 124589999999999999 8888888866
Q ss_pred CCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcc------ccccCcccEEEecccccccCCChHHHH-HH
Q 005313 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR------ISLNQVSYLVLDEADRMLDMGFEPQIR-KI 344 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~------~~l~~~~~IViDEaH~ml~~gf~~~i~-~i 344 (703)
. ++.+..+.|+......+..+...++|+|+||++|.+.+.... ..+.++++|||||||++.+.++...+. .+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 678888888877766666666678999999999998887543 567889999999999998776555443 32
Q ss_pred HHHc-------------CCCceEEEEecc
Q 005313 345 VKEV-------------PARRQTLMYTAT 360 (703)
Q Consensus 345 l~~l-------------~~~~q~L~lSAT 360 (703)
+... .+..++|+||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2221 157899999998
No 84
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=9.4e-23 Score=204.55 Aligned_cols=145 Identities=38% Similarity=0.563 Sum_probs=129.5
Q ss_pred eEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEE
Q 005313 394 TQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472 (703)
Q Consensus 394 ~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~IL 472 (703)
.+.........|...|..+++... ..++||||++++.++.+++.|. ..+.+..+||++++.+|+.+++.|++|+++||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHC-CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 344555667889999999998765 4699999999999999999997 47889999999999999999999999999999
Q ss_pred EEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHh
Q 005313 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 539 (703)
Q Consensus 473 VaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~ 539 (703)
|||+++++|||+|++++||+||+|++...|+||+||+||.|+.|.|++|++..+......+.+.+..
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999888877777766643
No 85
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=2.7e-22 Score=228.76 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHHHHHHHHhcCCCcEEE--EcccccccCCCCC----ccEEE
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLV--ATDVAARGLDIKD----IRVVV 491 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILV--aTdv~~~GIDIp~----v~~VI 491 (703)
....+||||+|...++.+++.|.. +. ..+++.. .+|+.+++.|+++. .||+ +|+.+++|||+|+ +++||
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 346899999999999999988864 33 3445543 46889999999864 6777 8899999999997 89999
Q ss_pred EecCCCC-H-----------------------------HHHHHHHhccCCCCCccEEEEEEec
Q 005313 492 NYDFPTG-V-----------------------------EDYVHRIGRTGRAGATGVAYTFFGD 524 (703)
Q Consensus 492 ~~d~P~s-~-----------------------------~~yiQriGRagR~G~~g~~i~~~~~ 524 (703)
++++|.. + ..+.|.+||+.|...+--++++++.
T Consensus 458 i~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 458 LAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 9999852 1 2345999999998665555666643
No 86
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=3e-22 Score=211.00 Aligned_cols=144 Identities=38% Similarity=0.567 Sum_probs=126.8
Q ss_pred ceEEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcE
Q 005313 393 ITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPV 471 (703)
Q Consensus 393 i~~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~I 471 (703)
+.+.+..+....|...|..+++... ..++||||++++.++.+++.|. ..+.+..+||++++.+|+.+++.|++|+++|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4566777788899999999998776 5799999999999999999997 4788999999999999999999999999999
Q ss_pred EEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHH
Q 005313 472 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLL 537 (703)
Q Consensus 472 LVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l 537 (703)
||||+++++|||||++++||+||+|++...|+||+||+||.|+.|.|++|++..+......+.+.+
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~ 147 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAV 147 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHH
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998877666665544
No 87
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=1.1e-21 Score=205.19 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=127.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
.+|+++|.++++.++.+++.|++++||+|||+++++++...+... ..++|||+|+++|+.||.+++.++.....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~------~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY------EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC------SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC------CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 389999999999999988999999999999999988877766531 23899999999999999999999987777
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceE
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~ 354 (703)
..+..++++..... .....++|+|+||+.|.+. ....+.++++|||||||++. ...+..++..+....++
T Consensus 186 ~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~~ 255 (282)
T 1rif_A 186 AMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFK 255 (282)
T ss_dssp GGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEE
T ss_pred ceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCeE
Confidence 78888888765432 2234589999999987543 23346788999999999986 45788888888788999
Q ss_pred EEEeccCcHHH
Q 005313 355 LMYTATWPREV 365 (703)
Q Consensus 355 L~lSAT~p~~v 365 (703)
|+||||+++..
T Consensus 256 l~lSATp~~~~ 266 (282)
T 1rif_A 256 FGLSGSLRDGK 266 (282)
T ss_dssp EEECSSCCTTS
T ss_pred EEEeCCCCCcc
Confidence 99999998654
No 88
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.77 E-value=1.8e-23 Score=202.34 Aligned_cols=146 Identities=33% Similarity=0.514 Sum_probs=129.4
Q ss_pred ceEEEEEecc-chhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCc
Q 005313 393 ITQHIEVLAP-MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSP 470 (703)
Q Consensus 393 i~~~~~~~~~-~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ 470 (703)
+.+.+..+.. ..|...|..+++.. ...++||||++++.++.+++.|.+ .+.+..+||++++.+|..+++.|++|+++
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 4555555665 67888888888764 456999999999999999999974 67899999999999999999999999999
Q ss_pred EEEEcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHh
Q 005313 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 539 (703)
Q Consensus 471 ILVaTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~ 539 (703)
|||||+++++|||+|++++||+||+|+++..|+||+||++|.|+.|.+++|+...+...+..+.+.+..
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 999999999999999999999999999999999999999999999999999998887777777666543
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.85 E-value=7e-20 Score=209.42 Aligned_cols=308 Identities=16% Similarity=0.125 Sum_probs=195.5
Q ss_pred CCcHHHHHHHHH----HHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 196 SPTPIQAQSWPI----ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 196 ~p~piQ~~ai~~----il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
+++|+|.+++.. +..++++++.||||+|||++|++|++.. ++++||++||++|+.|+.+++.++..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------KPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------CSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------CCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 689999998764 4578999999999999999999998871 35899999999999999999999877
Q ss_pred CCCceEEEeeCCCCC---------------------------------Cchh------------------hhhcCCCcEE
Q 005313 272 SSRISCTCLYGGAPK---------------------------------GPQL------------------KDIDRGVDIV 300 (703)
Q Consensus 272 ~~~i~v~~~~gg~~~---------------------------------~~~~------------------~~l~~g~dIl 300 (703)
..++++.++.|.... ...+ +.....++||
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEE
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEE
Confidence 777888877763210 0001 1223468999
Q ss_pred EECHHHHHHHHHhccccc-cCcccEEEecccccccCC-------------------------------------------
Q 005313 301 VATPGRLNDILEMRRISL-NQVSYLVLDEADRMLDMG------------------------------------------- 336 (703)
Q Consensus 301 V~Tp~~L~~~l~~~~~~l-~~~~~IViDEaH~ml~~g------------------------------------------- 336 (703)
|+|+..|++......+.+ ....+|||||||+|.+ .
T Consensus 153 V~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~ 231 (551)
T 3crv_A 153 ALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPD 231 (551)
T ss_dssp EEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred EeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999998765443333 4678899999998876 2
Q ss_pred ------------ChHHHHHHH----------------------------H----------------------------Hc
Q 005313 337 ------------FEPQIRKIV----------------------------K----------------------------EV 348 (703)
Q Consensus 337 ------------f~~~i~~il----------------------------~----------------------------~l 348 (703)
+...+..+. . .+
T Consensus 232 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~ 311 (551)
T 3crv_A 232 EKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLL 311 (551)
T ss_dssp SSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGG
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHH
Confidence 000000000 0 01
Q ss_pred CCC-ceEEEEeccCcHHHHHHHHHhhcCc--e-----ecccccchhhhccccceEEEE-Eecc------chhHHHHHHHH
Q 005313 349 PAR-RQTLMYTATWPREVRKIAADLLVNP--V-----QVNIGNVDELAANKAITQHIE-VLAP------MDKHRRLEQIL 413 (703)
Q Consensus 349 ~~~-~q~L~lSAT~p~~v~~l~~~~l~~~--~-----~i~i~~~~~~~~~~~i~~~~~-~~~~------~~k~~~L~~ll 413 (703)
... ..+|++|||+.. ...+...+.-+ . .+.+.... .....-.+. .+.. ......+...+
T Consensus 312 ~~~~~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf----~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i 385 (551)
T 3crv_A 312 NDNELSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV----SGSYECYIGVDVTSKYDMRSDNMWKRYADYL 385 (551)
T ss_dssp GCTTCEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC----SCEEEEEEECSCCCCTTTCCHHHHHHHHHHH
T ss_pred hccCceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC----CCceEEEEeCCCCCccccCCHHHHHHHHHHH
Confidence 122 678899999875 33333333322 2 11111111 111111111 0110 11123333333
Q ss_pred Hhc--CCCCeEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEc--ccccccCCCC----
Q 005313 414 RSQ--EPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT--DVAARGLDIK---- 485 (703)
Q Consensus 414 ~~~--~~~~kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaT--dv~~~GIDIp---- 485 (703)
... ...+.+|||+++.+.++.+++.+ ...+.+-..+++ +..+++.|+...-.||++| ..+.+|||+|
T Consensus 386 ~~l~~~~~g~~lvlF~Sy~~l~~v~~~~--~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 386 LKIYFQAKANVLVVFPSYEIMDRVMSRI--SLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HHHHHHCSSEEEEEESCHHHHHHHHTTC--CSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTE
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHHhc--CCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCC
Confidence 221 12358999999999999998732 233333223444 4557788864445799998 6999999999
Q ss_pred -CccEEEEecCCCC---------------------H---------HHHHHHHhccCCCCCccEEEEEEecC
Q 005313 486 -DIRVVVNYDFPTG---------------------V---------EDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 486 -~v~~VI~~d~P~s---------------------~---------~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
.++.||...+|.. . ..+.|.+||+-|..++--++++++..
T Consensus 461 ~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 461 SLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp ESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 3788998887641 1 11349999999987776666666543
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.84 E-value=9.2e-21 Score=192.92 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=124.7
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHH
Q 005313 184 ELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQ 263 (703)
Q Consensus 184 ~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~ 263 (703)
.+.+.+.......++++|.++++.+..+++++++++||+|||+++.++++..+..... .....+|+++|+++|+.|+.
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--AAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--GGGCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--CCceEEEEeccchHHHHHHH
Confidence 3333333334456899999999999999999999999999999888888776654222 12458999999999999998
Q ss_pred HHHHHhcCC-CCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc-ccCCCh-HH
Q 005313 264 DEAVKFGKS-SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM-LDMGFE-PQ 340 (703)
Q Consensus 264 ~~~~k~~~~-~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m-l~~gf~-~~ 340 (703)
+.+.+.... .+..+...... ........++|+|+||++|.+++.. .+.++++|||||||++ ++++|. ..
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRF-----ESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETT-----EEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeech-----hhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHH
Confidence 888765432 22222211110 0011123478999999999998875 4889999999999986 777776 35
Q ss_pred HHHHHHHcCCCceEEEEeccCcHHH
Q 005313 341 IRKIVKEVPARRQTLMYTATWPREV 365 (703)
Q Consensus 341 i~~il~~l~~~~q~L~lSAT~p~~v 365 (703)
++.++... ++.|+|+||||++.+.
T Consensus 199 l~~i~~~~-~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 199 LRDVVQAY-PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHC-TTSEEEEEECSSCCHH
T ss_pred HHHHHhhC-CCCeEEEEecCCCHHH
Confidence 55666555 5789999999999766
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=1.3e-18 Score=177.30 Aligned_cols=140 Identities=22% Similarity=0.126 Sum_probs=109.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..|+++|.+++..+++++++|++++||+|||++++.++... +.++||++|+++|+.||.+++.++ +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----------CSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 48999999999999999999999999999999987765442 247999999999999999999884 4
Q ss_pred ce-EEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCce
Q 005313 275 IS-CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353 (703)
Q Consensus 275 i~-v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q 353 (703)
+. +..+.++... ..+|+|+|++.+...... ....+++|||||||++.+..+ ..++..++ ..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~~-~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMSI-APF 220 (237)
T ss_dssp GGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTCC-CSE
T ss_pred CCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhcc-CCE
Confidence 66 6666665432 368999999998765542 124689999999999976543 44555554 567
Q ss_pred EEEEeccCcHHH
Q 005313 354 TLMYTATWPREV 365 (703)
Q Consensus 354 ~L~lSAT~p~~v 365 (703)
+|+||||+++..
T Consensus 221 ~l~LSATp~r~D 232 (237)
T 2fz4_A 221 RLGLTATFERED 232 (237)
T ss_dssp EEEEEESCC---
T ss_pred EEEEecCCCCCC
Confidence 899999998654
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.77 E-value=8.8e-18 Score=194.03 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=72.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhcCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc--cccccCCCCC--ccEEEEec
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD--VAARGLDIKD--IRVVVNYD 494 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd--v~~~GIDIp~--v~~VI~~d 494 (703)
.+.+|||+++...++.+++.|. .+... ..-+++..++..+++.|+ +.-.||++|. .+++|||+++ +..||...
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~ 524 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAG 524 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEc
Confidence 3579999999999999988886 33333 444555678999999999 8888999985 9999999996 67899988
Q ss_pred CCCC---H--------------------------HHHHHHHhccCCCCCccEEEEEEecC
Q 005313 495 FPTG---V--------------------------EDYVHRIGRTGRAGATGVAYTFFGDQ 525 (703)
Q Consensus 495 ~P~s---~--------------------------~~yiQriGRagR~G~~g~~i~~~~~~ 525 (703)
+|.- + ....|.+||+-|...+--++++++..
T Consensus 525 lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 525 LPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 8742 1 12359999999987776666676543
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.73 E-value=7.7e-18 Score=175.04 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=104.2
Q ss_pred eccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHhc--CCceeEecCCCCHHHHHHHHHHHhcC-CCc-EEEE
Q 005313 400 LAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQSERDYVLNQFRAG-RSP-VLVA 474 (703)
Q Consensus 400 ~~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~~--~~~~~~lhg~~~~~eR~~vl~~F~~G-~~~-ILVa 474 (703)
.....|...|.+++... ..+.++||||+++..++.++..|.+ ++.+..+||++++.+|..+++.|+++ .++ +||+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567888888888765 3568999999999999999999975 78899999999999999999999998 777 7999
Q ss_pred cccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHH
Q 005313 475 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLE 538 (703)
Q Consensus 475 Tdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~ 538 (703)
|+++++|||++.+++||+||+||++..|+|++||++|.|+.+.++++..-....+.+.+.+.+.
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~ 235 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLA 235 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHH
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876655444333344555555543
No 94
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.88 E-value=8.6e-10 Score=82.41 Aligned_cols=37 Identities=35% Similarity=0.742 Sum_probs=34.1
Q ss_pred CCCCCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 18 PEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
++|+.||.+|+.+.|. +| .||||..|..|||+||+..
T Consensus 15 ~~~~~LPpGW~~~~D~-sG-tYY~h~~T~tTQWerP~~~ 51 (55)
T 2e45_A 15 ETDSDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGRA 51 (55)
T ss_dssp CSCSCCCTTEEEEEET-TE-EEEEETTTCCEESSCCCCC
T ss_pred cCCCCCCCCCeEeecC-CC-CEEEEcCCCCCccCCCCCC
Confidence 5789999999999999 88 9999999999999999653
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.85 E-value=1.1e-08 Score=117.96 Aligned_cols=146 Identities=21% Similarity=0.279 Sum_probs=91.3
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCChHH--HHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 198 TPIQAQSWPIALQSRDIVAIAKTGSGKT--LGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 198 ~piQ~~ai~~il~grdvlv~ApTGsGKT--la~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.++|+++++.++.++.+++.+++|+||| ++++++++..+.. ..+.++++++||.+++.++.+.+..+....++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-----~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-----GERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-----SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-----cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999 5566655554311 12458999999999999998887765443332
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEE
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L 355 (703)
...... ... .....+ ..++-.+++.. . +.........+++||||||+ |++ ...+..|+..++...|+|
T Consensus 226 ~~~~~~-~~~--~~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 226 TDEQKK-RIP--EDASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp CSCCCC-SCS--CCCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEE
T ss_pred CHHHHh-ccc--hhhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEE
Confidence 211100 000 000001 11222223221 1 11112223378999999999 554 567788899999999999
Q ss_pred EEecc
Q 005313 356 MYTAT 360 (703)
Q Consensus 356 ~lSAT 360 (703)
++.-.
T Consensus 294 LvGD~ 298 (608)
T 1w36_D 294 FLGDR 298 (608)
T ss_dssp EEECT
T ss_pred EEcch
Confidence 88654
No 96
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.75 E-value=5.1e-09 Score=75.22 Aligned_cols=37 Identities=32% Similarity=0.621 Sum_probs=34.3
Q ss_pred CCCCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 18 PEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
|.|+.||.+|++.+|. +|..||||..|++|||++|..
T Consensus 3 ~~~~~LP~gW~~~~d~-~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 3 SGSSGLPPGWQSYLSP-QGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp CCCSSCCTTCEEEECT-TSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCCCCCceEEECC-CCCEEEEECCCCCEeCCCCCC
Confidence 5788999999999995 899999999999999999965
No 97
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.60 E-value=2.3e-08 Score=76.28 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=33.8
Q ss_pred CCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 20 DPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
|..||.+|+...|.++|..||+|.+|++||||+|..
T Consensus 5 ~~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~ 40 (54)
T 2jv4_A 5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPAD 40 (54)
T ss_dssp CCCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTT
T ss_pred CCCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCC
Confidence 567999999999999999999999999999999964
No 98
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.57 E-value=2.1e-08 Score=70.53 Aligned_cols=34 Identities=35% Similarity=0.768 Sum_probs=30.4
Q ss_pred CCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 21 PTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
+.||..|+..+|. .| .||||..|+.|||++|...
T Consensus 2 ~~LP~GWe~~~d~-~g-~YY~n~~t~~tqWe~P~~~ 35 (38)
T 2ho2_A 2 SDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGRA 35 (38)
T ss_dssp CCSCTTEEEEECS-SC-EEEEETTTTEEESSCCCC-
T ss_pred CcCCCCceEEEeC-CC-CEEEecCCCCEeccCCCCC
Confidence 4699999999997 78 9999999999999999753
No 99
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.3e-08 Score=71.43 Aligned_cols=37 Identities=27% Similarity=0.557 Sum_probs=34.0
Q ss_pred CCCCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 18 PEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
+.++.||.+|+..+|. +|..||+|..|++|||++|..
T Consensus 3 ~~~~~LP~GWe~~~d~-~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 3 SGSSGLPPGWEQRVDQ-HGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp SSCCSCCTTEEEEECT-TSCEEEEETTTCCEESSCSSS
T ss_pred CCCCCCCCCceEEECC-CCCEEEEECCCCCEecCCcCC
Confidence 4578999999999996 899999999999999999975
No 100
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.46 E-value=7.8e-08 Score=68.14 Aligned_cols=34 Identities=32% Similarity=0.830 Sum_probs=30.7
Q ss_pred CCCCCCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
.|..||..|+..+|.+ | .||||..|++|||++|.
T Consensus 5 ~~~~LP~GWe~~~~~~-G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 5 SSGGLPPGWRKIHDAA-G-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCCCTTEEEEEETT-E-EEEEESSSCCEESSCCC
T ss_pred CCCCCCCCcEEEEcCC-C-CEEEEcCCCCEeccCCC
Confidence 3568999999999988 7 59999999999999995
No 101
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.41 E-value=9.8e-08 Score=68.77 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=33.3
Q ss_pred CCCCCCCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 18 PEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
+.|+.||.+|+..+| .+|..||+|..|+.|||++|.
T Consensus 4 ~~~~~LP~gWe~~~~-~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 4 GIQSFLPPGWEMRIA-PNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CCCCSSCTTEEEEEC-TTSCEEEEETTTTEEESSCGG
T ss_pred CccCCCCCCcEEEEc-CCCCEEEEECCCCCeecCCCC
Confidence 567899999999999 589999999999999999995
No 102
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.40 E-value=3.6e-08 Score=74.66 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=34.8
Q ss_pred CCCCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
.++.||.+|+...|.++|..||+|.+|+++|||+|...
T Consensus 7 ~~~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 7 PEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp CHHHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred CcCCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 44679999999999999999999999999999999764
No 103
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.39 E-value=1.4e-07 Score=66.04 Aligned_cols=33 Identities=39% Similarity=0.778 Sum_probs=31.1
Q ss_pred CCCCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 21 PTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
+.||.+|+...| .+|..||+|..|.+|||++|.
T Consensus 3 ~~LP~GWe~~~d-~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 3 PPLPPGWEEKVD-NLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp SCSCTTEEEEEC-SSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCCEEEEC-CCCCEEEEECCCCCEeeeCcC
Confidence 579999999999 699999999999999999995
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.37 E-value=1.2e-05 Score=89.46 Aligned_cols=137 Identities=12% Similarity=0.095 Sum_probs=78.2
Q ss_pred CCCCCCcHHHHHHHHHHHcC----C-CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005313 192 AGFSSPTPIQAQSWPIALQS----R-DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 266 (703)
Q Consensus 192 ~g~~~p~piQ~~ai~~il~g----r-dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~ 266 (703)
+.|..|++-|++++..++.. + .++|.++.|+|||.+. ..++..+.... ...+++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~-----~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG-----ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT-----CCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC-----CceEEEecCcHHHHHHHHhhh
Confidence 35678889999999877543 3 7888999999999654 33444444321 136999999988887765544
Q ss_pred HHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHH
Q 005313 267 VKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK 346 (703)
Q Consensus 267 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~ 346 (703)
++.+..++.-..... .. ......+.. .....+..+++|||||++.+. ...+..++.
T Consensus 95 -------~~~~~T~h~~~~~~~--~~-~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~ 150 (459)
T 3upu_A 95 -------GKEASTIHSILKINP--VT-YEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLFKILLS 150 (459)
T ss_dssp -------SSCEEEHHHHHTEEE--EE-CSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHHHHHHH
T ss_pred -------ccchhhHHHHhccCc--cc-ccccchhcc----------cccccccCCCEEEEECchhCC----HHHHHHHHH
Confidence 111111100000000 00 000001100 112235578999999999652 346666677
Q ss_pred HcCCCceEEEEe
Q 005313 347 EVPARRQTLMYT 358 (703)
Q Consensus 347 ~l~~~~q~L~lS 358 (703)
.++...+++++.
T Consensus 151 ~~~~~~~~~~vG 162 (459)
T 3upu_A 151 TIPPWCTIIGIG 162 (459)
T ss_dssp HSCTTCEEEEEE
T ss_pred hccCCCEEEEEC
Confidence 776666666654
No 105
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.31 E-value=2.5e-07 Score=64.73 Aligned_cols=34 Identities=32% Similarity=0.680 Sum_probs=31.5
Q ss_pred CCCCCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 20 DPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
++.||.+|+...|. +|..||+|..|..|||++|.
T Consensus 2 ~~~LP~gWe~~~d~-~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 2 SPGLPSGWEERKDA-KGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp CTTCCTTEEEEECS-SSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCCCEEEECC-CCCEEEEECCCCCEeCcCCC
Confidence 46899999999995 89999999999999999995
No 106
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.31 E-value=2.8e-07 Score=64.85 Aligned_cols=34 Identities=26% Similarity=0.616 Sum_probs=31.2
Q ss_pred CCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 21 PTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
..||.+|+..+| .+|..||+|..|+.|||++|..
T Consensus 2 ~~LP~gW~~~~~-~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 2 MGLPPGWDEYKT-HNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CCSCTTEEEEEC-SSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCcEEEEC-CCCCEEEEECCCCCeeeeCcCC
Confidence 369999999999 5899999999999999999964
No 107
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.31 E-value=3.2e-07 Score=65.36 Aligned_cols=34 Identities=32% Similarity=0.684 Sum_probs=31.4
Q ss_pred CCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 21 PTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
+.||.+|+..+| .+|..||+|..|+.|||++|..
T Consensus 5 ~~LP~gWe~~~d-~~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 5 GPLPPGWERRVD-NMGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp CCCCSSCEEEEC-TTSCEEEECSSSCCEECCCCCC
T ss_pred CCCCCCcEEEEc-CCCCEEEEECCCCCEeccCCCC
Confidence 479999999999 5999999999999999999963
No 108
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.29 E-value=3.1e-07 Score=66.88 Aligned_cols=35 Identities=34% Similarity=0.680 Sum_probs=31.6
Q ss_pred CCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 20 DPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
++.||.+|+..+|. +|..||+|..|++|||++|..
T Consensus 6 ~~~LP~gW~~~~~~-~Gr~YY~n~~T~~t~We~P~~ 40 (43)
T 1ymz_A 6 SMPLPPGWERRTDV-EGKVYYFNVRTLTTTWERPTI 40 (43)
T ss_dssp -CCCCSSEEEEECT-TSCEEEEETTTTEEESSCCCS
T ss_pred CCCCCCCCEEEECC-CCCEEEEECCCCCCcccCCcc
Confidence 34799999999995 899999999999999999965
No 109
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.25 E-value=4.1e-07 Score=64.31 Aligned_cols=36 Identities=22% Similarity=0.556 Sum_probs=31.3
Q ss_pred CCCCCCCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 18 PEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
|.+..||.+|+..+| .+|..||.|..|..|||++|.
T Consensus 2 ~~~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 2 AMEGPLPDGWEQAMT-QDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp ---CCCSSSCCEEEE-TTTEEEEEETTTTEEESSCTT
T ss_pred CccCCCCCCcEEEEC-CCCCEEEEECCCCCEeCCCCC
Confidence 456689999999999 789999999999999999995
No 110
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.24 E-value=5.8e-07 Score=64.26 Aligned_cols=38 Identities=24% Similarity=0.449 Sum_probs=34.4
Q ss_pred CCCCCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 17 APEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
+|.+..||.+|+..+| .+|..||.|..|..|||++|..
T Consensus 2 ~~~~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 2 SSGSSGLPEGWEMRFT-VDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp CCCCCCCCSSEEEEEC-TTCCEEEEETTTCCEESSCTTT
T ss_pred CCCcCCCCcCcEEEEc-CCCCEEEEECCCCcEecCCCCC
Confidence 3567789999999999 7999999999999999999963
No 111
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.23 E-value=6.1e-07 Score=64.19 Aligned_cols=37 Identities=30% Similarity=0.510 Sum_probs=33.8
Q ss_pred CCCCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 18 PEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
+.+..||.+|+..+| .+|..||.|..|..|||++|..
T Consensus 3 ~~~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~ttW~~P~~ 39 (40)
T 2ysg_A 3 SGSSGLPYGWEEAYT-ADGIKYFINHVTQTTSWIHPVM 39 (40)
T ss_dssp CSSSCCCTTEEEEEC-SSSCEEEEESSSCCEECCCCCC
T ss_pred CCcCCCCCCcEEEEc-CCCCEEEEECCCCcCcCCCCCC
Confidence 456789999999999 7999999999999999999975
No 112
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.22 E-value=8.2e-07 Score=65.49 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=36.2
Q ss_pred cccCCCCCCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 14 VRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
|-=.+.+..||.+|+..+| .+|..||.|..|..|||++|...
T Consensus 2 p~~~~~~~~LP~gWe~~~~-~~Gr~Yyinh~t~~TtW~~Pr~~ 43 (46)
T 2ez5_W 2 PLGSGEEEPLPPRWSMQVA-PNGRTFFIDHASRRTTWIDPRNG 43 (46)
T ss_dssp CSSSCCSCCCCTTEEEEEC-TTSSEEEEETTTTEEESBCTTTC
T ss_pred CCCCCCCCCCCcCcEEEEc-CCCCEEEEECCCCCEeccCCCCC
Confidence 3335677789999999999 58999999999999999999764
No 113
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.20 E-value=9.7e-07 Score=65.93 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=35.9
Q ss_pred CCCCCCCCCCccccccCCccceEeecCCCCcccccCCCCCCC
Q 005313 17 APEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMMAP 58 (703)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (703)
..+|..||.+|+..+|. +|..||.|..|..|||++|....|
T Consensus 6 ~~~~~~LP~gWe~~~~~-~Gr~Yy~nh~t~~T~W~~P~~~~p 46 (49)
T 2ysb_A 6 SGEDLPLPPGWSVDWTM-RGRKYYIDHNTNTTHWSHPLESGP 46 (49)
T ss_dssp CCCCCCCCTTEEEEECS-SSCEEEEETTTTEEESSCTTTSCC
T ss_pred CCCCCCCCCCceEEECC-CCCEEEEEcCCCCEEecCCCCCCC
Confidence 45677899999999995 899999999999999999976443
No 114
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=98.19 E-value=1e-06 Score=65.67 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=33.3
Q ss_pred CCCCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 18 PEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
-+++.||..|+..+| .+|..||.|+.|..|||++|..
T Consensus 9 ~~~~~LP~GWe~~~d-~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 9 DSELELPAGWEKIED-PVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp CCSSCCCTTEEEEEE-TTTEEEEEETTTTEEESSCCCS
T ss_pred CCCCCCCcCceEEEc-CCCCEEEEeCCCCCEecCCCCC
Confidence 345789999999999 6899999999999999999965
No 115
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.15 E-value=4.9e-06 Score=94.98 Aligned_cols=123 Identities=20% Similarity=0.186 Sum_probs=81.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.+++.|++++..++..+.+++.++.|+|||.+.. .++..+.. .+.++++++||...+..+.+.+. .
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~------~g~~Vl~~ApT~~Aa~~L~e~~~-------~ 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES------LGLEVGLCAPTGKAARRLGEVTG-------R 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH------TTCCEEEEESSHHHHHHHHHHHT-------S
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh------cCCeEEEecCcHHHHHHhHhhhc-------c
Confidence 5789999999999999999999999999997532 23333333 24589999999988887665431 1
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHH----HHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCC
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDI----LEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 351 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~----l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~ 351 (703)
. ..|..+|+.. +.........+++|||||++++. ...+..++..++..
T Consensus 255 ~------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 255 T------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPG 306 (574)
T ss_dssp C------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTT
T ss_pred c------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCC
Confidence 1 1111111100 00111223467899999999652 45677778888877
Q ss_pred ceEEEEecc
Q 005313 352 RQTLMYTAT 360 (703)
Q Consensus 352 ~q~L~lSAT 360 (703)
.++|++.-.
T Consensus 307 ~~lilvGD~ 315 (574)
T 3e1s_A 307 ARVLLVGDT 315 (574)
T ss_dssp CEEEEEECT
T ss_pred CEEEEEecc
Confidence 777776443
No 116
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.14 E-value=7.3e-05 Score=86.44 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~ 270 (703)
..+++-|.+++.. ....++|.|+.|||||.+.+--+...+...... ..++|+|++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~---~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCS---PYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCC---GGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCC---hhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999973 356799999999999987555444444332211 2379999999999999999988764
No 117
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.14 E-value=8.9e-07 Score=66.29 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=32.0
Q ss_pred CCCCCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 18 PEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
..++.||.+|+..+| .+|..||.|..|..|||++|...
T Consensus 8 ~~~~~LP~gWe~~~~-~~G~~Yy~nh~T~~ttWe~Pr~~ 45 (49)
T 2kpz_A 8 IEQGFLPKGWEVRHA-PNGRPFFIDHNTKTTTWEDPRLK 45 (49)
T ss_dssp ----CCCTTEEEEEC-TTSCEEEEETTTTEEESSCTTCC
T ss_pred ccCCCCCCCcEEEEC-CCCCEEEEECCCCCEecCCCCCC
Confidence 346789999999999 68999999999999999999764
No 118
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.14 E-value=1.2e-06 Score=65.72 Aligned_cols=36 Identities=31% Similarity=0.541 Sum_probs=32.8
Q ss_pred CCCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 20 DPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
...||.+|+..+| .+|..||.|..|..|||++|...
T Consensus 9 ~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~T~We~Pr~~ 44 (50)
T 1i5h_W 9 LGPLPPGWEERTH-TDGRVFFINHNIKKTQWEDPRMQ 44 (50)
T ss_dssp CSSCSTTEEEEEC-TTSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCCcCcEEEEc-CCCCEEEEECCCCCEEeeCCCCC
Confidence 4569999999999 88999999999999999999764
No 119
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.10 E-value=1.9e-05 Score=91.18 Aligned_cols=70 Identities=21% Similarity=0.171 Sum_probs=54.8
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 194 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 194 ~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
+..+++.|.+|+..++...-++|.+|+|+|||.+..- ++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-----~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-----GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-----SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-----CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999999877889999999999976443 33333321 2358999999999999998887654
No 120
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.09 E-value=1.9e-06 Score=63.52 Aligned_cols=38 Identities=24% Similarity=0.621 Sum_probs=34.6
Q ss_pred CCCCCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 17 APEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
.+.+..||.+|+..+| .+|..||.|..|..|||++|..
T Consensus 6 ~~~~~~LP~gWe~~~~-~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 6 SPASGPLPEGWEQAIT-PEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp STTTSCCCTTCEEEEC-TTSCEEEEETTTTEEECSCCSS
T ss_pred CCcCCCCCcCceeEEC-CCCCEEEEECCCCCEeCCCCCc
Confidence 4567789999999999 7899999999999999999965
No 121
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.6e-06 Score=67.29 Aligned_cols=42 Identities=24% Similarity=0.417 Sum_probs=35.9
Q ss_pred CcccCCCCCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 13 SVRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
|..-+-.+..||..|+..+| .+|..||.|+.|..|||++|..
T Consensus 4 g~~~~d~~~~LP~GWE~~~d-~~Gr~YYvnh~tk~T~We~P~~ 45 (60)
T 2yse_A 4 GSSGLDSELELPAGWEKIED-PVYGIYYVDHINRKTQYENPVL 45 (60)
T ss_dssp CSCCCCCCSSCCSSEEEEEC-SSSCEEEEETTTTEEESSCHHH
T ss_pred CccccCCCCCCCCCcEEEEC-CCCCEEEEeCCCCCeeccCCCc
Confidence 33444566789999999999 6899999999999999999964
No 122
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.04 E-value=2.8e-06 Score=61.34 Aligned_cols=35 Identities=29% Similarity=0.554 Sum_probs=32.3
Q ss_pred CCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 20 DPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
+..||.+|+..+| .+|..||.|..|..|||++|..
T Consensus 5 ~~~LP~GWe~~~~-~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 5 SGPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CSCCCSSEEEEEC-SSSCEEEEETTTTEEESSCTTT
T ss_pred cCCCCcCcEEEEC-CCCCEEEEECCCCCEeCCCCCC
Confidence 4579999999999 8999999999999999999965
No 123
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.04 E-value=8.5e-06 Score=94.55 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 196 SPTPIQAQSWPIALQSRD-IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grd-vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
.+.+-|.+|+..++..++ .||++|+|||||.+.+-.+...+.. +.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999998775 5777999999998755444443332 458999999999999998887664
No 124
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=3.4e-05 Score=91.33 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=54.9
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 194 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 194 ~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
+..+++.|.+|+..++...-++|.+|+|+|||.+..- ++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-----~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-----HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH-----HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC-----CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999999999877789999999999976443 33333221 1348999999999999999988775
No 125
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=97.96 E-value=4.9e-06 Score=63.12 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=34.2
Q ss_pred CCCCCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 18 PEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
..+..||.+|+..+| .+|..||.|..|..|||++|...
T Consensus 14 ~~~~~LP~GWe~~~~-~~Gr~Yyinh~tk~TtW~dPr~~ 51 (53)
T 2jmf_A 14 INEGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPRPG 51 (53)
T ss_dssp TSCSCCCTTEEEEEC-TTSCEEEEETTTCCEESSCCCSS
T ss_pred CcCCCCCcCcEEEEc-CCCCEEEEeCCCCcEecCCCCCC
Confidence 456679999999999 79999999999999999999764
No 126
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=97.96 E-value=2.1e-06 Score=55.53 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=25.4
Q ss_pred CCccccccCCccceEeecCCCCcccccCC
Q 005313 25 KPWKGLVDGRTGYLYFWNPETNVTQYERP 53 (703)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (703)
.+|+ +|.++|..||.|.+|+++||++|
T Consensus 1 ~gWe--~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE--IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE--EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe--EECCCCCeEEEECCCCCEeccCC
Confidence 3799 89999999999999999999998
No 127
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.91 E-value=4.8e-06 Score=62.14 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=32.7
Q ss_pred CCCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
+++.||..|+...|. +|..||.|..|..|||++|..
T Consensus 10 ~~~~LP~GWe~~~d~-~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 10 EREGLPPGWERVESS-EFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CSSCCCTTEEEEEET-TTEEEEEETTTTEEESSCCCC
T ss_pred CCCCCCcCcEEEECC-CCCEEEEECCCCCEeccCcCC
Confidence 357899999999996 789999999999999999965
No 128
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.89 E-value=5.8e-05 Score=89.29 Aligned_cols=70 Identities=21% Similarity=0.171 Sum_probs=54.5
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 194 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 194 ~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
...+++.|.+|+..++...-++|.+|+|+|||.+..- ++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~-----~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-----GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT-----CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc-----CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4468999999999999887789999999999976433 33343321 2348999999999999988887654
No 129
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=97.86 E-value=4.2e-06 Score=60.07 Aligned_cols=32 Identities=25% Similarity=0.576 Sum_probs=26.9
Q ss_pred CCCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 22 TLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
.+|.+|+...+. +|..||+|.+|+++|||+|.
T Consensus 9 ~~~~~W~e~~~~-~G~~YYyN~~T~eS~We~P~ 40 (41)
T 1ywi_A 9 SAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPD 40 (41)
T ss_dssp ---CCEEEEEET-TTEEEEEETTTTEEEESCC-
T ss_pred CCCCCcEEEECC-CCCEEEEECCCCCEEeCCCC
Confidence 468899999987 79999999999999999994
No 130
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.84 E-value=0.00013 Score=76.30 Aligned_cols=121 Identities=11% Similarity=0.087 Sum_probs=84.5
Q ss_pred ccchhHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 005313 401 APMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVA 478 (703)
Q Consensus 401 ~~~~k~~~L~~ll~~~-~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~ 478 (703)
....|+..|..+|... ..+.++|||++..+..+.+.+++. +.+....+.|.....++ + -.+..+.|.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCC
Confidence 3567888888888765 456799999999999999999997 67888889988554321 1 124455565556666
Q ss_pred cccCC-----CCCccEEEEecCCCCHHHH-HHHHhccCCC--CCc--cEEEEEEecCC
Q 005313 479 ARGLD-----IKDIRVVVNYDFPTGVEDY-VHRIGRTGRA--GAT--GVAYTFFGDQD 526 (703)
Q Consensus 479 ~~GID-----Ip~v~~VI~~d~P~s~~~y-iQriGRagR~--G~~--g~~i~~~~~~d 526 (703)
.-|+| +...++||.||..|++..- +|.+-|+.|. |+. -.+|-|+....
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 66676 6788999999999999875 9999999997 333 44555555443
No 131
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=97.78 E-value=1.2e-05 Score=57.39 Aligned_cols=32 Identities=19% Similarity=0.478 Sum_probs=29.2
Q ss_pred CCCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 22 TLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
.+|.+|+...+ .+|..||+|.+|+++|||+|.
T Consensus 7 ~~~~~W~e~~~-~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 7 GTEEIWVENKT-PDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp CCCCSEEEEEC-TTSCEEEEETTTCCEESSCCS
T ss_pred CCCCCCEEEEC-CCCCEEEEECCCCCEEeCCCC
Confidence 67899999885 689999999999999999995
No 132
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.74 E-value=2.8e-05 Score=59.21 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=33.5
Q ss_pred CCCCCCCCccccccCCccceEeecCCCCcccccCCCCCC
Q 005313 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMMA 57 (703)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (703)
.+..||..|+..+| .+|..||-|..|..|||++|....
T Consensus 8 ~~~~LP~GWe~~~~-~~G~~Yyinh~tk~TtwedPr~~~ 45 (54)
T 1wmv_A 8 VAGDLPYGWEQETD-ENGQVFFVDHINKRTTYLDPRLAF 45 (54)
T ss_dssp CSSCSCTTEEEEEC-TTSCEEEEESSSCCEESSCTTSSC
T ss_pred cCCCCCcCcEEEEC-CCCCEEEEeCCCCCEeecCCCCcc
Confidence 34469999999999 589999999999999999997753
No 133
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.68 E-value=3.4e-05 Score=59.36 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=32.6
Q ss_pred CCCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 20 DPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
+..||.+|+..+| .+|..||.|..|..|||++|...
T Consensus 12 ~~~LP~GWe~~~~-~~Gr~Yyinh~tk~TtWe~Pr~~ 47 (57)
T 2ysd_A 12 LGPLPENWEMAYT-ENGEVYFIDHNTKTTSWLDPRCL 47 (57)
T ss_dssp CCSCCSSEEEEEC-SSCCEEEEETTTTEEESSCTTTC
T ss_pred CCCCCcCcEEEEC-CCCCEEEEECCCCcEecCCCCCc
Confidence 4569999999999 58999999999999999999764
No 134
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=97.66 E-value=2.2e-05 Score=54.97 Aligned_cols=31 Identities=23% Similarity=0.528 Sum_probs=28.4
Q ss_pred CCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 23 LPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
...+|+...+.. |..||+|.+|+++|||+|.
T Consensus 4 ~~~~W~e~~~~~-G~~YYyN~~T~es~We~P~ 34 (37)
T 1e0l_A 4 AVSEWTEYKTAD-GKTYYYNNRTLESTWEKPQ 34 (37)
T ss_dssp SSCSCEEEECTT-SCEEEEETTTTEEESSCCS
T ss_pred CCCCeEEEECCC-CCEEEEECCCCCEEecCCC
Confidence 456899999987 9999999999999999995
No 135
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.60 E-value=3.8e-05 Score=56.60 Aligned_cols=38 Identities=29% Similarity=0.533 Sum_probs=34.9
Q ss_pred CCCCCCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 17 APEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
.|.+..||.+|+..++ .+|..||-|..|..|+|++|..
T Consensus 3 ~P~~~~LP~GWe~~~~-~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 3 IPDDVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp CCSSCCCCTTBCCBCC-SSCCCBEEETTTTEEESSCTTT
T ss_pred CCCCCCCCcCcEEEEc-CCCceEEEEecCCceeecCCCc
Confidence 4778899999999998 8899999999999999999965
No 136
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=97.60 E-value=2.3e-05 Score=66.90 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=32.7
Q ss_pred CCCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 20 DPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
+..||..|...+|. +|..||+|+.|+++||++|...
T Consensus 9 ~~~lp~~W~e~~~~-~Gr~YYyN~~T~~s~We~P~~~ 44 (92)
T 2l5f_A 9 ASGAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPDDL 44 (92)
T ss_dssp TTBTTTTEEEEECT-TSCEEEEETTTTEEESSCSGGG
T ss_pred CCCCCCCcEEEEcC-CCCEEEEECCCCceecccCccc
Confidence 44799999999998 8999999999999999999653
No 137
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=97.51 E-value=3.1e-05 Score=73.61 Aligned_cols=38 Identities=32% Similarity=0.693 Sum_probs=30.7
Q ss_pred CCCCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
+++.||.+|....|..+|..||+|+.|+.|||++|...
T Consensus 6 ~~~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 6 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp ----CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 34679999999999999999999999999999999663
No 138
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=97.37 E-value=9.3e-05 Score=62.89 Aligned_cols=40 Identities=23% Similarity=0.503 Sum_probs=34.9
Q ss_pred cCCCCCCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 16 YAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
.+..+..||..|+..+|. +|..||.|..|+.|||++|...
T Consensus 3 ~~~~~~~LP~gWe~~~~~-~Gr~YY~n~~t~~t~W~~P~~~ 42 (90)
T 2kxq_A 3 LGGSPPDLPEGYEQRTTQ-QGQVYFLHTQTGVSTWHDPRVP 42 (90)
T ss_dssp CCSSCCSCCSSCEEEEET-TTEEEEEETTTTEEESSCSSSC
T ss_pred CCCCCCCCCCCcEEEECC-CCCEEEEECCCCeEeeeccccc
Confidence 345567899999999994 8999999999999999999753
No 139
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.23 E-value=0.0029 Score=68.23 Aligned_cols=71 Identities=14% Similarity=0.004 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~ 271 (703)
.|+|+|+..+..+...+.+++..+-+.|||.+....++..+.. . .+..+++++|+++.|..+.+.++.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---~--~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---N--KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---S--SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---C--CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 7899999999877655678888999999998765554443332 1 245899999999999888777776543
No 140
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=97.20 E-value=0.00014 Score=59.58 Aligned_cols=34 Identities=24% Similarity=0.648 Sum_probs=30.9
Q ss_pred CCCCCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 20 DPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
...||.+|+.++|. +|..||+|++|+++||++|.
T Consensus 41 ~~~~~~~W~~~~~~-~Gr~YyyN~~T~~s~We~P~ 74 (75)
T 2jxw_A 41 KTAVKTVWVEGLSE-DGFTYYYNTETGESRWEKPD 74 (75)
T ss_dssp SSSCCCSEEEEEET-TTEEEEEETTTTEEESSCCC
T ss_pred ccCCCccEEEEECC-CCCEEEEECcCCCEeccCcC
Confidence 34689999999998 79999999999999999994
No 141
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=97.02 E-value=0.00026 Score=59.86 Aligned_cols=35 Identities=29% Similarity=0.575 Sum_probs=32.0
Q ss_pred CCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 21 PTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
..||..|+..+| .+|.+||.|..|..|||++|...
T Consensus 11 ~~LP~gWe~~~~-~~Gr~Yy~n~~t~~t~W~~P~~~ 45 (88)
T 1tk7_A 11 GPLPDGWEKKIQ-SDNRVYFVNHKNRTTQWEDPRTQ 45 (88)
T ss_dssp SSSSSSCCEEEE-TTTEEEEEETTTTEEEEESCCCT
T ss_pred CCCCCCcEEEEC-CCCCEEEEECCCCCeEeeccccc
Confidence 369999999999 68999999999999999999764
No 142
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.00 E-value=0.0017 Score=70.99 Aligned_cols=106 Identities=23% Similarity=0.187 Sum_probs=63.4
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhh
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l 293 (703)
.++.++.|+|||..+. ..+.. ...|||+||++++..|.+.+.+.... .
T Consensus 164 ~~I~G~aGsGKTt~I~----~~~~~--------~~~lVlTpT~~aa~~l~~kl~~~~~~-------------~------- 211 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL----SRVNF--------EEDLILVPGRQAAEMIRRRANASGII-------------V------- 211 (446)
T ss_dssp EEEEECTTSCHHHHHH----HHCCT--------TTCEEEESCHHHHHHHHHHHTTTSCC-------------C-------
T ss_pred EEEEcCCCCCHHHHHH----HHhcc--------CCeEEEeCCHHHHHHHHHHhhhcCcc-------------c-------
Confidence 4677999999996432 11111 25699999999999888776432100 0
Q ss_pred cCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 294 ~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
...+-|.|.++++- +......-.+++||||||- |++. ..+..++..++. .++|++.-+
T Consensus 212 --~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 --ATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp --CCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred --cccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCH---HHHHHHHHhCCC-CEEEEecCc
Confidence 01234778777632 2112222247899999998 4433 344455555554 556666544
No 143
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=96.91 E-value=0.00047 Score=58.47 Aligned_cols=34 Identities=29% Similarity=0.565 Sum_probs=31.5
Q ss_pred CCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 21 PTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
..||.+|+..+| .+|..||.|+.|+.|||+.|..
T Consensus 54 ~~LP~gWe~~~~-~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 54 GPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CCCCSSCCEEEC-TTSCEEEEETTTTEEESSCTTT
T ss_pred cccCCCceEEEC-CCCCEEEEECCCCcEecCCCCc
Confidence 479999999999 7899999999999999999965
No 144
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.91 E-value=0.0045 Score=70.80 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=84.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC-
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR- 274 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~- 274 (703)
.|+|+|+..+..+-..+.+++..+-+.|||.+....++..+... .+..+++++|+.+.+..+.+.++.+.....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-----~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~ 237 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----KDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-----SSCEEEEEESSHHHHHHHHHHHHHHHTTSCT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHHHHHHHHHHHHhChH
Confidence 68999999998875567788899999999987654444444331 134899999999999998888887765433
Q ss_pred -ceEEEeeCCCCCCchhhhhcCCCcEEEEC--HHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcC--
Q 005313 275 -ISCTCLYGGAPKGPQLKDIDRGVDIVVAT--PGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP-- 349 (703)
Q Consensus 275 -i~v~~~~gg~~~~~~~~~l~~g~dIlV~T--p~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~-- 349 (703)
+....... . ...+ .+..+..|.+.+ +..+.- ..++++|+||+|.+-+. ...+..+...+.
T Consensus 238 ~~~~~~~~~-~--~~~i-~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 238 FLQPGIVEW-N--KGSI-ELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISSG 302 (592)
T ss_dssp TTSCCEEEE-C--SSEE-EETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSSS
T ss_pred hhccccccC-C--ccEE-EecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhccC
Confidence 11000000 0 0011 123344444332 333311 13678999999986431 233444444443
Q ss_pred CCceEEEEe
Q 005313 350 ARRQTLMYT 358 (703)
Q Consensus 350 ~~~q~L~lS 358 (703)
.+.+++++|
T Consensus 303 ~~~~ii~is 311 (592)
T 3cpe_A 303 RRSKIIITT 311 (592)
T ss_dssp SCCEEEEEE
T ss_pred CCceEEEEe
Confidence 234454444
No 145
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=96.89 E-value=0.0007 Score=58.74 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=35.8
Q ss_pred cCCCCCCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 16 YAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
++..+..||..|+.-+|. +|..||=|+.|+.|+|++|..+
T Consensus 66 ~~d~~~pLP~GWE~r~d~-~Gr~YfIdH~tktTtW~dPRl~ 105 (109)
T 3l4h_A 66 FADTRLELPRGWEIKTDQ-QGKSFFVDHNSRATTFIDPRIP 105 (109)
T ss_dssp TCCTTSCCCTTEEEEECT-TCCEEEEETTTTEEESSCSCCS
T ss_pred CCCCCCCCCCCCeEEECC-CCCEEEEeCCCCCEeeCCCCcc
Confidence 456677899999999998 8999999999999999999764
No 146
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=96.89 E-value=0.00063 Score=50.73 Aligned_cols=30 Identities=23% Similarity=0.659 Sum_probs=27.1
Q ss_pred CccccccCCccceEeecCCCCcccccCCCCC
Q 005313 26 PWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
+|....+.. |+.||+|.+|+++|||+|..-
T Consensus 8 ~W~e~~s~~-G~~YYyN~~T~eS~WekP~~~ 37 (50)
T 2dk1_A 8 RWVEGITSE-GYHYYYDLISGASQWEKPEGF 37 (50)
T ss_dssp CEEECCCST-TCCCEEESSSCCEESSCCTTC
T ss_pred CeEEEECCC-CCEEEEECCCCCEEeeCChhh
Confidence 799999884 999999999999999999653
No 147
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=96.86 E-value=0.00028 Score=60.13 Aligned_cols=32 Identities=25% Similarity=0.642 Sum_probs=29.0
Q ss_pred CCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 23 LPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
||.+|+..++. +|..||+|+.|++|||++|..
T Consensus 53 ~~~~W~~~~~~-~Gr~Yy~N~~T~~s~We~P~~ 84 (92)
T 2l5f_A 53 SKCPWKEYKSD-SGKTYYYNSQTKESRWAKPKE 84 (92)
T ss_dssp HSCSEEEEECT-TCCEEEEETTTTEEESCCCHH
T ss_pred cccceEEEECC-CCCEEEEECCCCCeeccCchh
Confidence 78899999875 799999999999999999953
No 148
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.84 E-value=0.0033 Score=59.81 Aligned_cols=45 Identities=20% Similarity=0.089 Sum_probs=26.1
Q ss_pred CcccEEEeccccc-ccCCChHHHHHHHHHcC-CCceEEEEeccCcHH
Q 005313 320 QVSYLVLDEADRM-LDMGFEPQIRKIVKEVP-ARRQTLMYTATWPRE 364 (703)
Q Consensus 320 ~~~~IViDEaH~m-l~~gf~~~i~~il~~l~-~~~q~L~lSAT~p~~ 364 (703)
+.++|||||++.. ++......+..++.... ....+|+.|...+..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 5678999999953 22222344555555443 445566666665543
No 149
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=96.82 E-value=0.00049 Score=58.12 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=31.1
Q ss_pred CCCCCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 20 DPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
...||.+|+..+| .+|..||.|+.|+.|||++|.
T Consensus 54 ~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 54 EGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp SCSSCSSCEEEEE-TTTEEEEEETTTTEEESSSSC
T ss_pred ccccCCceEEEEC-CCCCEEEEECCCCcEeCCCCC
Confidence 4579999999999 679999999999999999995
No 150
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.66 E-value=0.0054 Score=71.90 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=73.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 005313 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274 (703)
Q Consensus 195 ~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~ 274 (703)
..+++-|++++.. ....++|.|..|||||.+.+--+...+...... ...+|+|+.|+..+.++.+.+.++....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~---p~~IL~vTFTnkAA~Em~~Rl~~~l~~~- 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVA---PWNILAITFTNKAAREMRERVQSLLGGA- 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCC---GGGEEEEESSHHHHHHHHHHHHHHHGGG-
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCC---HHHeEEEeccHHHHHHHHHHHHHHhccc-
Confidence 4689999999975 356899999999999987554444444432111 2379999999999999998887763210
Q ss_pred ceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcccc-c-cCcccEEEecccc
Q 005313 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS-L-NQVSYLVLDEADR 331 (703)
Q Consensus 275 i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~-l-~~~~~IViDEaH~ 331 (703)
...+.|+|.+.|...+...... + -.-.+.|+|+.+.
T Consensus 84 ---------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 84 ---------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp ---------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred ---------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 0246799998886544322211 1 1234678887663
No 151
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=96.61 E-value=0.00045 Score=56.47 Aligned_cols=33 Identities=30% Similarity=0.628 Sum_probs=29.9
Q ss_pred CCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 22 TLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
.||.+|+...|. +|..||.|+.|+.|||++|..
T Consensus 40 ~lp~gW~~~~~~-~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 40 LRENGWKAAKTA-DGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp HHHHTCEEEECT-TCCEEEEETTTTEEESSCCCC
T ss_pred CCCCeEEEEECC-CCCEEEEECCCCCEECCCCCC
Confidence 489999999885 699999999999999999965
No 152
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.54 E-value=0.0033 Score=73.01 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=71.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.+++-|++++.. ....++|.|..|||||.+.+--+...+...... ...+|+|+.|+..+.++.+.+.+......
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~---~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~- 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQ---ARHIAAVTFTNKAAREMKERVGQTLGRKE- 75 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCC---GGGEEEEESSHHHHHHHHHHHHHHSCTTT-
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCC---HHHeEEEeccHHHHHHHHHHHHHHcCccc-
Confidence 478999999975 357889999999999987654444444432211 23799999999999999999887643211
Q ss_pred eEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhcccc-cc-CcccEEEeccc
Q 005313 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS-LN-QVSYLVLDEAD 330 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~-l~-~~~~IViDEaH 330 (703)
...+.|.|.+.|...+...... +. .-.+-|+|+.+
T Consensus 76 --------------------~~~~~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~ 112 (673)
T 1uaa_A 76 --------------------ARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTD 112 (673)
T ss_dssp --------------------TTTSEEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHH
T ss_pred --------------------ccCCEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHH
Confidence 0247789988886544322111 10 12345677654
No 153
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.38 E-value=0.0054 Score=59.55 Aligned_cols=37 Identities=16% Similarity=0.012 Sum_probs=25.4
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
+=.++.+++|+|||.+.+-.+...... +.+++++.|.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~-------g~kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA-------KQKIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEec
Confidence 345777999999997755444333322 4589999887
No 154
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.31 E-value=0.0052 Score=59.19 Aligned_cols=38 Identities=26% Similarity=0.086 Sum_probs=25.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
++-.++.+++|+|||..++-.+..+... +.+++++.|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~-------g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG-------KKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-------TCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeec
Confidence 4556788999999997654333333222 3478888887
No 155
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.19 E-value=0.0072 Score=60.13 Aligned_cols=90 Identities=11% Similarity=0.022 Sum_probs=48.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 290 (703)
+.-+++.+++|+|||...+-.+...... +.+++++.|...- . ....+....++. .
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~-------g~kVli~~~~~d~--r---~~~~i~srlG~~---------~---- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA-------DVKYLVFKPKIDT--R---SIRNIQSRTGTS---------L---- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEEECCCG--G---GCSSCCCCCCCS---------S----
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc-------CCEEEEEEeccCc--h---HHHHHHHhcCCC---------c----
Confidence 3446777999999998755444343332 3478888775310 0 000111111110 0
Q ss_pred hhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332 (703)
Q Consensus 291 ~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m 332 (703)
..+.+.+...+.+.+... ..-..+++|||||++.+
T Consensus 67 ------~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ------PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp ------CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGS
T ss_pred ------cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccC
Confidence 123345556666555432 22345899999999964
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.032 Score=58.49 Aligned_cols=25 Identities=12% Similarity=-0.245 Sum_probs=18.1
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHh
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLK 237 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~ 237 (703)
.++++.+|+|+|||++.-. ++..+.
T Consensus 46 ~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 5789999999999976443 334443
No 157
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.99 E-value=0.0077 Score=55.88 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=25.3
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCC-Cce-EEEEeccCcH
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA-RRQ-TLMYTATWPR 363 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~-~~q-~L~lSAT~p~ 363 (703)
.+.++|||||++.+.... ...+..++..+.. ... +|+.|-..|.
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 356889999999864433 4455555554433 244 5554443443
No 158
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.99 E-value=0.0077 Score=59.32 Aligned_cols=37 Identities=16% Similarity=-0.032 Sum_probs=25.5
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcH
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 256 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Ptr 256 (703)
=.++.+++|+|||..++-.+..+... +.+++|+.|..
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~-------g~kVli~k~~~ 66 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFA-------KQHAIVFKPCI 66 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEECC-
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEecc
Confidence 34678999999998765544444333 45899999875
No 159
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.96 E-value=0.012 Score=67.50 Aligned_cols=112 Identities=22% Similarity=0.263 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 005313 196 SPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273 (703)
Q Consensus 196 ~p~piQ~~ai~~il~g--rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~ 273 (703)
.+|.-|++++..++.- ...++.|+-|.|||.+.-+. +..+.. .++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~-~a~~~~---------~~~vtAP~~~a~~~l~~~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQL-ISRIAG---------RAIVTAPAKASTDVLAQFAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHH-HHHSSS---------CEEEECSSCCSCHHHHHHHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHH-HHHHHh---------CcEEECCCHHHHHHHHHHhhC-----
Confidence 6899999999988873 34688899999999654333 233221 469999998776654443211
Q ss_pred CceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCChHHHHHHHHHcCCCce
Q 005313 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353 (703)
Q Consensus 274 ~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q 353 (703)
.|-+..|+.+.. ...+.++||||||=.+ -.+.+..++...+
T Consensus 240 ------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~~~---- 280 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSRFP---- 280 (671)
T ss_dssp ------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTTSS----
T ss_pred ------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhhCC----
Confidence 133445655421 2345899999999865 3566666665332
Q ss_pred EEEEeccC
Q 005313 354 TLMYTATW 361 (703)
Q Consensus 354 ~L~lSAT~ 361 (703)
.++||.|.
T Consensus 281 ~v~~~tTv 288 (671)
T 2zpa_A 281 RTLLTTTV 288 (671)
T ss_dssp EEEEEEEB
T ss_pred eEEEEecC
Confidence 46666675
No 160
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=95.90 E-value=0.0043 Score=50.57 Aligned_cols=31 Identities=23% Similarity=0.626 Sum_probs=28.2
Q ss_pred CCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 25 KPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
..|...+|.. |..||.|..|+++||++|...
T Consensus 5 ~~W~e~~~~~-G~~YYyN~~T~~s~We~P~~~ 35 (75)
T 2jxw_A 5 GRWVEGITSE-GYHYYYDLISGASQWEKPEGF 35 (75)
T ss_dssp CCEEEEEETT-TEEEEEETTTTEEECSCCSSC
T ss_pred CCcEEEECCC-CCEEEEECCCCCEeecCCCcc
Confidence 4799999985 999999999999999999753
No 161
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.54 E-value=0.042 Score=58.26 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.1
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
...+++.+|+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999754
No 162
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.52 E-value=0.15 Score=49.45 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=74.4
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHH-HHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE-LATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Ptre-La~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 290 (703)
-.+++....|.|||.+++-.++..+.. |.+|+|+.=.+. .-.--.+.+.++ .+.+...--+.....+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~-------G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~ 97 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH-------GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQN 97 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT-------TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCC
Confidence 367888999999999888777777655 568888832221 000001112222 13222211111111100
Q ss_pred hhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEecccccccCCC--hHHHHHHHHHcCCCceEEEEeccCcHHHHHH
Q 005313 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPARRQTLMYTATWPREVRKI 368 (703)
Q Consensus 291 ~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~gf--~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l 368 (703)
... +...+ -..| ..+. ..+.-..+++|||||+-.++..++ .+.+..++...+...-+|+.+--.|.++.++
T Consensus 98 ~~~----~~~~a-~~~l-~~a~-~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 98 REA----DTAAC-MAVW-QHGK-RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHH----HHHHH-HHHH-HHHH-HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred cHH----HHHHH-HHHH-HHHH-HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 000 00000 1111 1111 123336799999999976555443 3567777777777888888888888877665
Q ss_pred H
Q 005313 369 A 369 (703)
Q Consensus 369 ~ 369 (703)
+
T Consensus 171 A 171 (196)
T 1g5t_A 171 A 171 (196)
T ss_dssp C
T ss_pred C
Confidence 4
No 163
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.47 E-value=0.066 Score=50.08 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.3
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
...+++.+++|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3578999999999996543
No 164
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.39 E-value=0.084 Score=50.78 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.8
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
+.+++.+++|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999754
No 165
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.26 E-value=0.018 Score=56.63 Aligned_cols=39 Identities=15% Similarity=-0.003 Sum_probs=24.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcH
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 256 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Ptr 256 (703)
+.=.++.+++|+|||...+-.+..+... +.+++|+.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~-------g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA-------KQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-------TCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc-------CCceEEEEecc
Confidence 3445778999999997554433333222 34789998864
No 166
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.25 E-value=0.057 Score=58.95 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=38.4
Q ss_pred ccCcccEEEecccccc---cCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHh
Q 005313 318 LNQVSYLVLDEADRML---DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 372 (703)
Q Consensus 318 l~~~~~IViDEaH~ml---~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~ 372 (703)
...+++||||++-++. +..+...+..+...+.+..-+++++|+...+....+..+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 3578999999998653 333556677777777777778889998765555555444
No 167
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.21 E-value=0.0062 Score=48.53 Aligned_cols=30 Identities=27% Similarity=0.672 Sum_probs=25.6
Q ss_pred CCccccccCCccceEeecCCCCcccccCCCC
Q 005313 25 KPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
.||..+. -..|..||||++|+.++|++|.-
T Consensus 20 t~W~~v~-T~dGR~fyyN~~Tk~S~WekP~e 49 (73)
T 2dk7_A 20 TPWCVVW-TGDERVFFYNPTTRLSMWDRPDD 49 (73)
T ss_dssp SSCEEEE-ESSSCEEEEETTTTEECSSCCTT
T ss_pred CCcEEEE-CCCCCEEEecCcccceeccCChH
Confidence 3799876 46788999999999999999954
No 168
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.18 E-value=0.016 Score=57.58 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=26.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcH
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 256 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Ptr 256 (703)
++=.++.+++|+|||...+-.+..+... +.+++|+-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~-------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA-------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT-------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEeecC
Confidence 4445778999999997765544444332 45889988864
No 169
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.17 E-value=0.028 Score=59.19 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHH----cCC---CEEEEecCCChHHHHHHH
Q 005313 197 PTPIQAQSWPIAL----QSR---DIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 197 p~piQ~~ai~~il----~gr---dvlv~ApTGsGKTla~ll 230 (703)
++|||.+++..+. +++ .+++.+|.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 5788888876654 333 378899999999976553
No 170
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=95.14 E-value=0.0073 Score=49.14 Aligned_cols=29 Identities=31% Similarity=0.715 Sum_probs=26.9
Q ss_pred CccccccCCccceEeecCCCCcccccCCCC
Q 005313 26 PWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
.|...+|. +|..||.|..|++|||++|..
T Consensus 3 ~W~~~~~~-~Gr~YY~n~~T~~s~W~~P~~ 31 (75)
T 1o6w_A 3 IWKEAKDA-SGRIYYYNTLTKKSTWEKPKE 31 (75)
T ss_dssp CEEEEECT-TCCEEEEETTTTEEESSCCHH
T ss_pred CCeEEECC-CCCeEEEECCCCCEEeecchh
Confidence 69999998 899999999999999999964
No 171
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=95.11 E-value=0.012 Score=56.42 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=32.4
Q ss_pred CCCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 21 PTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
..||.+|...++.++|..||.|++|+..+|++|..
T Consensus 6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~ 40 (177)
T 1yw5_A 6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40 (177)
T ss_dssp CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred CCCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence 35999999999999999999999999999999953
No 172
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.09 E-value=0.091 Score=54.13 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.0
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
.++++.+|+|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997543
No 173
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.06 E-value=0.077 Score=55.32 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.1
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
..+++.+|+|+|||..+-
T Consensus 38 ~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SSEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999997543
No 174
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.99 E-value=0.43 Score=44.37 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=14.6
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
..+++.+++|+|||..+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57899999999999754
No 175
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.97 E-value=0.2 Score=48.03 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=25.9
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
....+|||||+|.+... ....+..++........+|+.+..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45678999999987432 234455566665666656655543
No 176
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.97 E-value=0.087 Score=55.93 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.4
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
+.+++.+|+|+|||..+
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46899999999999754
No 177
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.93 E-value=0.034 Score=69.05 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=75.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 005313 196 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275 (703)
Q Consensus 196 ~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i 275 (703)
.+++-|.++|..- +++++|.|..|||||.+.+--++..+.... .+-...++|+|+.|+..+.++.+.+.+.....-.
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~ 86 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE-NPIDVDRLLVVTFTNASAAEMKHRIAEALEKELV 86 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS-SCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC-CCCCccceEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 6799999999763 789999999999999876555555544421 1112237999999999999998888764321000
Q ss_pred eEEEeeCCCCCCchh-hhhcCCCcEEEECHHHHHHHHHhcc-ccc-cCcccEEEeccc
Q 005313 276 SCTCLYGGAPKGPQL-KDIDRGVDIVVATPGRLNDILEMRR-ISL-NQVSYLVLDEAD 330 (703)
Q Consensus 276 ~v~~~~gg~~~~~~~-~~l~~g~dIlV~Tp~~L~~~l~~~~-~~l-~~~~~IViDEaH 330 (703)
..+....+ +.+..-..+-|.|.+.|...+.... ..+ -.-.+-|+||..
T Consensus 87 -------~~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~ 137 (1232)
T 3u4q_A 87 -------QRPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTE 137 (1232)
T ss_dssp -------HSTTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHH
T ss_pred -------cCcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHH
Confidence 00111111 1111124578999999876554322 111 122344778765
No 178
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.91 E-value=0.057 Score=57.37 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=13.8
Q ss_pred CEEEEecCCChHHHHH
Q 005313 213 DIVAIAKTGSGKTLGY 228 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ 228 (703)
.+++.+|+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999653
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.71 E-value=0.04 Score=54.09 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCChHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~ 228 (703)
..+.+++.+|+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999654
No 180
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.70 E-value=0.12 Score=53.88 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=16.0
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
.+++++.+|+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997543
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.50 E-value=0.22 Score=50.32 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=14.9
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
..+++.+|+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 468999999999997543
No 182
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.49 E-value=0.1 Score=47.66 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=17.2
Q ss_pred HHcCCCEEEEecCCChHHHHH
Q 005313 208 ALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 208 il~grdvlv~ApTGsGKTla~ 228 (703)
.....++++.+++|+|||..+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 345678999999999999654
No 183
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.47 E-value=0.042 Score=53.19 Aligned_cols=38 Identities=16% Similarity=-0.021 Sum_probs=24.7
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
++=.++.+++|+|||.-.+-.+-.+... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEccc
Confidence 4456778999999996544433333332 3478888875
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.41 E-value=0.37 Score=50.19 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=29.7
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-----cCCCEEEEecCCChHHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIAL-----QSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il-----~grdvlv~ApTGsGKTla~l 229 (703)
|-.+|+++.-.+.+++.|...=. .|.+ .+.+. ..+.+|+.+|+|+|||+.+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 33568877666677776653210 0000 01111 12569999999999997543
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.16 E-value=0.17 Score=55.33 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=25.8
Q ss_pred CcccEEEecccccccC-CChHHHHHHHHHc-CCCceEEEEeccCcH
Q 005313 320 QVSYLVLDEADRMLDM-GFEPQIRKIVKEV-PARRQTLMYTATWPR 363 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~-gf~~~i~~il~~l-~~~~q~L~lSAT~p~ 363 (703)
..++|||||+|.+... .....+..++..+ ....++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 5678999999998653 1233344444443 444566665554443
No 186
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.12 E-value=0.086 Score=48.06 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=17.6
Q ss_pred HHHHcCCCEEEEecCCChHHHH
Q 005313 206 PIALQSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 206 ~~il~grdvlv~ApTGsGKTla 227 (703)
..+....++++.+++|+|||..
T Consensus 22 ~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 22 AAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHTCSSCEEEEEETTCCHHHH
T ss_pred HHhCCCCcEEEECCCCccHHHH
Confidence 3345667999999999999954
No 187
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.92 E-value=0.11 Score=54.90 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=15.1
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
+..+++.+++|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999654
No 188
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.75 E-value=0.24 Score=51.41 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=26.5
Q ss_pred CcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 320 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
...+|||||+|.+........+..+++..+...++|+.+..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 57889999999875122344555666666666666664443
No 189
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.65 E-value=0.035 Score=56.66 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=30.1
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHH-HHHHHHHH--HcCCCEEEEecCCChHHHHH
Q 005313 173 FMSFDATGFPPELLREVHNAGFSSPTPI-QAQSWPIA--LQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 173 ~~sf~~~~l~~~l~~~l~~~g~~~p~pi-Q~~ai~~i--l~grdvlv~ApTGsGKTla~ 228 (703)
-.+|+++.-.+..++.|...-. .+. ..+.+..+ ...+.+++.+|+|+|||..+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4567777666666666653210 011 11111111 23467999999999999654
No 190
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.53 E-value=0.19 Score=59.09 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=68.1
Q ss_pred HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccC
Q 005313 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAARGL 482 (703)
Q Consensus 409 L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-v~~~GI 482 (703)
+..++.....+.++||.++++.-+.++++.+.+ .+.+..+||+++..++..+++.+.+|..+|+|+|. .+...+
T Consensus 407 ll~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~ 486 (780)
T 1gm5_A 407 QLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV 486 (780)
T ss_dssp HHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC
T ss_pred HHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh
Confidence 333444334467999999999999888877753 46789999999999999999999999999999995 445567
Q ss_pred CCCCccEEEEe
Q 005313 483 DIKDIRVVVNY 493 (703)
Q Consensus 483 DIp~v~~VI~~ 493 (703)
++.++.+||.-
T Consensus 487 ~~~~l~lVVID 497 (780)
T 1gm5_A 487 HFKNLGLVIID 497 (780)
T ss_dssp CCSCCCEEEEE
T ss_pred hccCCceEEec
Confidence 88888887753
No 191
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.44 E-value=0.13 Score=57.54 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=25.0
Q ss_pred cCcccEEEecccccccCC--ChHHHHHHHHHcCCCceEEEEeccC
Q 005313 319 NQVSYLVLDEADRMLDMG--FEPQIRKIVKEVPARRQTLMYTATW 361 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~g--f~~~i~~il~~l~~~~q~L~lSAT~ 361 (703)
....+|||||+|.|.... ....+..+++.. ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 345689999999886532 224455555442 34467777663
No 192
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.41 E-value=0.24 Score=54.15 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=34.2
Q ss_pred cCcccEEEecccccccC-CChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHh
Q 005313 319 NQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 372 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~-gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~ 372 (703)
..+++||||.+=++... .....+..+.....+..-++.+.||...+....+..+
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 35789999998654321 1334455556666677778888998765555555444
No 193
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.34 E-value=0.24 Score=53.28 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=65.5
Q ss_pred HHHhcCCCCeEEEEcCCHHHHHHHHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-----ccccC
Q 005313 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-----AARGL 482 (703)
Q Consensus 412 ll~~~~~~~kvLVF~~s~~~a~~la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv-----~~~GI 482 (703)
++.....+.++||.++++..+.++++.+.+ .+.+..+||+.+..++...++.+..+..+|+|+|.- +.. +
T Consensus 57 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~ 135 (414)
T 3oiy_A 57 ALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-L 135 (414)
T ss_dssp HHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-H
T ss_pred HHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-h
Confidence 333345667999999999999999988876 568999999999999999999999999999999952 222 5
Q ss_pred CCCCccEEEEe
Q 005313 483 DIKDIRVVVNY 493 (703)
Q Consensus 483 DIp~v~~VI~~ 493 (703)
++.++.+||.-
T Consensus 136 ~~~~~~~iViD 146 (414)
T 3oiy_A 136 SQKRFDFVFVD 146 (414)
T ss_dssp TTCCCSEEEES
T ss_pred ccccccEEEEe
Confidence 66678887753
No 194
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.19 E-value=0.77 Score=44.46 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=14.9
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
+.-+++.+++|+|||..+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4567888999999996443
No 195
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.15 E-value=0.39 Score=47.25 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=29.9
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~ 269 (703)
.+.-+++.+++|+|||..++..+...+.. +..++++.-. +-..++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-------~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM-------GEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT-------TCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEcc-CCHHHHHHHHHHc
Confidence 34567888999999997544333333321 2357776643 2345555555443
No 196
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.83 E-value=0.74 Score=49.22 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.3
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
.+.+|+.+|+|+|||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 368999999999999754
No 197
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.77 E-value=0.68 Score=44.65 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=13.6
Q ss_pred CEEEEecCCChHHHHH
Q 005313 213 DIVAIAKTGSGKTLGY 228 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ 228 (703)
.+++.+++|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999653
No 198
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.61 E-value=0.46 Score=48.85 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=25.5
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEec
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSA 359 (703)
....+|||||+|.+... ....+.++++..+....+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45678999999987432 23445556666666665555443
No 199
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.33 E-value=0.46 Score=50.31 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.2
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
+.+|+.+|+|+|||+.+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999997543
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.26 E-value=0.5 Score=48.68 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=29.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHH-HHHHH--HHcCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQA-QSWPI--ALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~-~ai~~--il~grdvlv~ApTGsGKTla~ 228 (703)
|-.+|+++.-.+.+++.|...-. .+.+. +.+.. +...+.+++.+|+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 34667777656666666653200 00000 00001 123467999999999999754
No 201
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.089 Score=57.38 Aligned_cols=35 Identities=26% Similarity=0.546 Sum_probs=32.0
Q ss_pred CCCCCCccccccCCccceEeecCCCCcccccCCCCC
Q 005313 21 PTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMM 56 (703)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (703)
..||..|..-+| .+|..||=|+.|..|||+.|..+
T Consensus 7 ~~lP~gWe~~~~-~~g~~y~i~h~~~~t~w~~Pr~~ 41 (429)
T 3olm_A 7 GPLPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLP 41 (429)
T ss_dssp CCCCTTCCCCCS-SCCCCCEEETTTTEEESSCTTSC
T ss_pred CCCCCCceeEEC-CCCCeEEEeCCCcceeccCCCCC
Confidence 469999999999 59999999999999999999774
No 202
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.16 E-value=0.28 Score=52.42 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=13.4
Q ss_pred CCEEE--EecCCChHHHHH
Q 005313 212 RDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv--~ApTGsGKTla~ 228 (703)
..+++ .++.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35777 799999999653
No 203
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.93 E-value=0.35 Score=50.65 Aligned_cols=42 Identities=12% Similarity=0.300 Sum_probs=29.6
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEeccC
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 361 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~ 361 (703)
.+.++|||||+|. ++......+.++++..+....+|+.|..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 3677999999998 55545566777777777776666666544
No 204
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.91 E-value=0.35 Score=50.43 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=14.8
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
..+++.+|+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999754
No 205
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.76 E-value=0.5 Score=49.29 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=25.9
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEec
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSA 359 (703)
....+|||||+|.+... ....+.++++..+....+|+.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35679999999987432 23455666666666665666543
No 206
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.61 E-value=3.8 Score=42.16 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=28.6
Q ss_pred HHHHHHHHHhccccccCcccEEEeccccccc---CCChHHHHHHHHHcCCCceEEEEe
Q 005313 304 PGRLNDILEMRRISLNQVSYLVLDEADRMLD---MGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 304 p~~L~~~l~~~~~~l~~~~~IViDEaH~ml~---~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
...+.+.+..... .--+|||||+|.+.+ ..+...+..++...+ ...+|+.+
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 4455555543211 234799999998764 345566666665542 44444433
No 207
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.58 E-value=1.2 Score=46.26 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=29.2
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHH----HHH-----cCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWP----IAL-----QSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~----~il-----~grdvlv~ApTGsGKTla~ 228 (703)
|-.+|++..=.+.+.+.|... -.+| .+. ..+.+++.+|+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~----------v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEA----------VILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH----------HHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHH----------HHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 346788876666666666521 1111 111 1257999999999999654
No 208
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.33 E-value=0.73 Score=47.73 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=25.3
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
...++|||||||.|.... ...+.+.++..++...+|+.+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 457899999999885332 344556666655566555554
No 209
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.18 E-value=0.67 Score=48.72 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=23.3
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
....+|||||+|.|... ....+.++++..+....+|+.+
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 35678999999987432 2334445555555555445544
No 210
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.68 E-value=0.32 Score=53.37 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.4
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
..+|+.+|+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36899999999999754
No 211
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.63 E-value=1.2 Score=46.76 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.1
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
+.+++.+|+|+|||..+.
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999997543
No 212
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.59 E-value=0.54 Score=48.22 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=25.0
Q ss_pred CcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEec
Q 005313 320 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 359 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSA 359 (703)
...+|||||+|.|... ....+.++++..+....+|+.+.
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEeC
Confidence 3678999999987532 22334556666666666666553
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.27 E-value=1.4 Score=47.49 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAG---FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g---~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ 228 (703)
|-.+|++.+=-+++.+.|...= +..|--++... +.--+.+|+.+|+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 4578998865566666665321 11111111111 112378999999999999753
No 214
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=90.13 E-value=0.096 Score=53.06 Aligned_cols=33 Identities=27% Similarity=0.611 Sum_probs=30.1
Q ss_pred CCCCCccccccCCccceEeecCCCCcccccCCCC
Q 005313 22 TLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM 55 (703)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (703)
.||.||+.-++. +|..||=|++|..|||+.|..
T Consensus 11 ~l~~~we~~~~~-~~~~y~~~h~~~tt~w~~p~~ 43 (261)
T 1eg3_A 11 SVQGPWERAISP-NKVPYYINHETQTTCWDHPKM 43 (261)
T ss_dssp TCCTTEEEEECT-TSCEEEEETTTTEEESSCHHH
T ss_pred CCCCCcceeECC-CCCeEeecCCcccccCCCCch
Confidence 699999999985 799999999999999999943
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.09 E-value=0.64 Score=46.62 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.4
Q ss_pred HcCCCEEEEecCCChHHHHH
Q 005313 209 LQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 209 l~grdvlv~ApTGsGKTla~ 228 (703)
.....+++.+++|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 34578999999999999643
No 216
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.91 E-value=0.76 Score=50.34 Aligned_cols=45 Identities=20% Similarity=0.051 Sum_probs=26.3
Q ss_pred HHHHHHc----CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 204 SWPIALQ----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 204 ai~~il~----grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
.+..++. +.-+++.+++|+|||..++..+...... .+.+|+|+..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~------~g~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK------TNENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH------SSCCEEEEES
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEEEC
Confidence 4555553 3456778999999996544433333322 1336777764
No 217
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.83 E-value=0.4 Score=50.73 Aligned_cols=37 Identities=22% Similarity=0.077 Sum_probs=23.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
++-+++.+++|+|||..++..+...... +.+++++.-
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEC
Confidence 3567888999999997654433333322 336777764
No 218
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.79 E-value=0.4 Score=50.78 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.2
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
.+.+++.+|+|+|||+.+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999754
No 219
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.72 E-value=3.6 Score=42.19 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=26.7
Q ss_pred cCcccEEEecccccc-cCCChHHHHHHHHHcCCCceEEEEeccCcHHHH
Q 005313 319 NQVSYLVLDEADRML-DMGFEPQIRKIVKEVPARRQTLMYTATWPREVR 366 (703)
Q Consensus 319 ~~~~~IViDEaH~ml-~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~ 366 (703)
.++++|||||.-.+. +......+..+...+.+..-++.+.++-..+..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~ 227 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL 227 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHH
Confidence 568999999994432 211233444445545555545667766443333
No 220
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.71 E-value=1.3 Score=54.48 Aligned_cols=81 Identities=16% Similarity=0.278 Sum_probs=66.6
Q ss_pred HHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccccCCCC
Q 005313 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT-DVAARGLDIK 485 (703)
Q Consensus 412 ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaT-dv~~~GIDIp 485 (703)
.+.....+.++||.|+++..+.++++.+.+ .+.+..+++..+..++..+++.+.+|..+|+|+| ..+...+.+.
T Consensus 645 a~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~ 724 (1151)
T 2eyq_A 645 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 724 (1151)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCS
T ss_pred HHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccc
Confidence 334445567999999999999988888764 2467889999999999999999999999999999 4556668888
Q ss_pred CccEEEE
Q 005313 486 DIRVVVN 492 (703)
Q Consensus 486 ~v~~VI~ 492 (703)
++.+||.
T Consensus 725 ~l~lvIi 731 (1151)
T 2eyq_A 725 DLGLLIV 731 (1151)
T ss_dssp SEEEEEE
T ss_pred ccceEEE
Confidence 8888775
No 221
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.63 E-value=0.43 Score=61.11 Aligned_cols=44 Identities=25% Similarity=0.159 Sum_probs=30.2
Q ss_pred HHHHHc------CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 205 WPIALQ------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 205 i~~il~------grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
+..++. ++.+++.+|+|+|||..++..+...... +.+++|+..-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~-------G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEcc
Confidence 555655 5789999999999997655443333322 4578888765
No 222
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.54 E-value=1.1 Score=44.59 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=14.9
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
.+.+++.+|+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357899999999999654
No 223
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.50 E-value=1 Score=46.97 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=27.0
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
...+++||||+|.|... ....+.++++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 35789999999987532 3455667777777666666554
No 224
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.38 E-value=0.65 Score=56.75 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=65.6
Q ss_pred HHhcCCCCeEEEEcCCHHHHHHHHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccccCC
Q 005313 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAARGLD 483 (703)
Q Consensus 413 l~~~~~~~kvLVF~~s~~~a~~la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~GID 483 (703)
+.....+.++||.+++++.+.++++.|.+ .+.+..+||+++..+|...++.+..+..+|||+|. .+.. ++
T Consensus 115 l~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~ 193 (1104)
T 4ddu_A 115 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LS 193 (1104)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HH
T ss_pred HHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hc
Confidence 33345667999999999999999999986 45789999999998999999999999999999995 2222 55
Q ss_pred CCCccEEEEec
Q 005313 484 IKDIRVVVNYD 494 (703)
Q Consensus 484 Ip~v~~VI~~d 494 (703)
+.++.+||.-.
T Consensus 194 ~~~l~~lViDE 204 (1104)
T 4ddu_A 194 QKRFDFVFVDD 204 (1104)
T ss_dssp TSCCSEEEESC
T ss_pred ccCcCEEEEeC
Confidence 67888887643
No 225
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.34 E-value=0.84 Score=49.85 Aligned_cols=45 Identities=18% Similarity=-0.011 Sum_probs=26.2
Q ss_pred HHHHHHcC----CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 204 SWPIALQS----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 204 ai~~il~g----rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
.++.++.| .-+++.+++|+|||..++-.+...... .+.++++++-
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~------~g~~vl~~sl 237 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK------EGVGVGIYSL 237 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT------TCCCEEEEES
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEEC
Confidence 35555533 346778999999996544333333321 1336777764
No 226
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=89.23 E-value=0.27 Score=43.90 Aligned_cols=45 Identities=27% Similarity=0.488 Sum_probs=31.4
Q ss_pred cccccccccCCcccC--------CCCCCCCCCcccccc-CCc------cceEeecCCCCc
Q 005313 3 MAATATATSASVRYA--------PEDPTLPKPWKGLVD-GRT------GYLYFWNPETNV 47 (703)
Q Consensus 3 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~ 47 (703)
-|...+++|+++|++ .+||.||+.|+-.+= ..+ .-+||++|+.+.
T Consensus 10 ~~~~~~~~~~~~rr~vi~~~~~~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP~GKk 69 (133)
T 1ub1_A 10 PAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKA 69 (133)
T ss_dssp CCCCCCCSCCCCCCCCCCTTSCSSCCCCBTTBCEEEEEECCCSSSCCSEEEEEECTTSCE
T ss_pred CcCcccccCccCccceeeccccccCCCCCCCCCEEEEEEecCCCCCCceeEEEECCCCCe
Confidence 345556667888887 569999999975543 233 358999997543
No 227
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.01 E-value=0.35 Score=50.96 Aligned_cols=36 Identities=22% Similarity=0.062 Sum_probs=22.8
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
.-+++.+++|+|||..++-.+..... .+.+|+|++-
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~-------~g~~Vl~fSl 82 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN-------DDRGVAVFSL 82 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-------TTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeC
Confidence 45677799999999654433333322 1347888864
No 228
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.99 E-value=0.9 Score=49.63 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=29.2
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHH-HH-HHHHcCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQ-SW-PIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~-ai-~~il~grdvlv~ApTGsGKTla~ 228 (703)
|-.+|+++.-.+.+.+.|...-. .|.+.. .+ ......+.+|+.+|+|+|||+.+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 44678877655666666653200 000000 00 00112367999999999999754
No 229
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.55 E-value=1.7 Score=46.74 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=21.1
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHCCCC
Q 005313 169 VPPPFMSFDATGFPPELLREVHNAGFS 195 (703)
Q Consensus 169 ~p~p~~sf~~~~l~~~l~~~l~~~g~~ 195 (703)
.+.++..++..++.+..++.|.+.||.
T Consensus 79 ~~~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 79 SFVPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp CSCBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred CccCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 345667777788999999998888875
No 230
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.37 E-value=2.7 Score=42.58 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.3
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
.+.+++.+|+|+|||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 468999999999999754
No 231
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.19 E-value=0.57 Score=48.31 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=14.8
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
..+++.+|+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 68999999999999654
No 232
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.11 E-value=0.51 Score=52.35 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=25.2
Q ss_pred cccEEEecccccccCC----------ChHHHHHHHHHcCCCceEEEEeccC
Q 005313 321 VSYLVLDEADRMLDMG----------FEPQIRKIVKEVPARRQTLMYTATW 361 (703)
Q Consensus 321 ~~~IViDEaH~ml~~g----------f~~~i~~il~~l~~~~q~L~lSAT~ 361 (703)
..+|+|||+|.+.... ....+..++..+.....++++.||-
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn 348 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEES
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecC
Confidence 3579999999876421 1123444455555556677777774
No 233
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.94 E-value=0.51 Score=48.31 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=15.4
Q ss_pred cCCCEEEEecCCChHHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~l 229 (703)
.|.-+++++++|+|||..+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHH
Confidence 35567888999999996543
No 234
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.86 E-value=0.87 Score=48.28 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=26.9
Q ss_pred HHHHHHc------CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 204 SWPIALQ------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 204 ai~~il~------grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
.++.++. +.-++|.+|+|+|||..++. ++..+.. .+.+++++..-
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~-la~~~~~------~gg~VlyId~E 98 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALH-AIAEAQK------MGGVAAFIDAE 98 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHH-HHHHHHH------TTCCEEEEESS
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHH-HHHHHHh------cCCeEEEEecc
Confidence 3455555 34577889999999964433 3333322 13367787654
No 235
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.69 E-value=1 Score=48.00 Aligned_cols=37 Identities=22% Similarity=0.045 Sum_probs=23.0
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
.-++|.+++|+|||..++-.+...... +.+++|+..-
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEECC
Confidence 557778999999996554433333221 2367777653
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.53 E-value=2.9 Score=42.93 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=24.1
Q ss_pred cCcccEEEecccccccCCChHHHHHHHHHcC---CCceEEEEeccCc
Q 005313 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVP---ARRQTLMYTATWP 362 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~gf~~~i~~il~~l~---~~~q~L~lSAT~p 362 (703)
.++++||||.+-+.. .-...+..+...+. +...++++.+|..
T Consensus 181 ~~~dlvIiDT~G~~~--~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 181 SEYDHVFVDTAGRNF--KDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp GGSSEEEEECCCCCT--TSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred cCCCEEEEeCCCCCh--hhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 678999999765432 12344555554443 3333677766644
No 237
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.50 E-value=1.3 Score=43.31 Aligned_cols=20 Identities=15% Similarity=-0.052 Sum_probs=15.4
Q ss_pred CCCEEEEecCCChHHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ll 230 (703)
+.-+++.+++|+|||..+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45678889999999975443
No 238
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.37 E-value=0.52 Score=46.45 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=27.8
Q ss_pred ccCcccEEEeccccccc-----CCChHHHHHHHHHcCCCceEEEEeccCcH
Q 005313 318 LNQVSYLVLDEADRMLD-----MGFEPQIRKIVKEVPARRQTLMYTATWPR 363 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~-----~gf~~~i~~il~~l~~~~q~L~lSAT~p~ 363 (703)
..+.++|||||.-.+++ ......+..++..+...-.+++++.....
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 34678899999988775 33344466666665433335555555433
No 239
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.35 E-value=0.47 Score=51.92 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=32.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH--HcCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQ-AQSWPIA--LQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ-~~ai~~i--l~grdvlv~ApTGsGKTla~ 228 (703)
|-.+|++.+=-+++.+.|...=. .|.. -+.+..+ .--+.+|+.+|+|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 45789998777777777764210 1111 1111111 12368999999999999753
No 240
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.11 E-value=0.99 Score=49.14 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=34.3
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHH
Q 005313 171 PPFMSFDATGFPPELLREVHNAG---FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 171 ~p~~sf~~~~l~~~l~~~l~~~g---~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ 228 (703)
.|-.+|++.+-.+++.+.|...= +..|.-++...+ .--+.+|+.+|+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 46688999887778777776321 112222222111 11368999999999999753
No 241
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.05 E-value=1.4 Score=52.36 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.1
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
+++++++++|+|||..+-
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 479999999999997543
No 242
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.83 E-value=1.8 Score=41.67 Aligned_cols=72 Identities=19% Similarity=0.357 Sum_probs=52.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-----c-cccCCCCC
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-----A-ARGLDIKD 486 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv-----~-~~GIDIp~ 486 (703)
..++||.|+++..+.++++.+.+ .+.+..++++....+... .+.++..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 34899999999999988877653 467888999988665543 344567799999951 1 23467778
Q ss_pred ccEEEEe
Q 005313 487 IRVVVNY 493 (703)
Q Consensus 487 v~~VI~~ 493 (703)
+.+||.-
T Consensus 159 ~~~lViD 165 (220)
T 1t6n_A 159 IKHFILD 165 (220)
T ss_dssp CCEEEEE
T ss_pred CCEEEEc
Confidence 8887753
No 243
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.21 E-value=2 Score=46.57 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=30.9
Q ss_pred CCCCCcCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNA---GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~---g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ 228 (703)
|-.+|++.+=-+++.+.|... -+..|--++...+ .--+.+|+.+|+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 557898886555666655532 1112222221111 11367999999999999753
No 244
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.20 E-value=1.9 Score=44.61 Aligned_cols=49 Identities=14% Similarity=-0.046 Sum_probs=27.7
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAV 267 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~ 267 (703)
+.-+++.+++|+|||..++-.+...... +.++++++-- +-..|+...+.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHH
Confidence 3457788999999996544333333222 2478888743 23334444443
No 245
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.89 E-value=0.38 Score=52.49 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAG---FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g---~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ 228 (703)
|-.+|++.+=.++..+.|...= +..|--++... +.--+.+|+.+|+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 5578988876666666665320 11111111110 011368999999999999754
No 246
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.71 E-value=0.73 Score=47.13 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.0
Q ss_pred CEEEEecCCChHHHHH
Q 005313 213 DIVAIAKTGSGKTLGY 228 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ 228 (703)
.+++.+|+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999654
No 247
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.68 E-value=3 Score=42.09 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=17.4
Q ss_pred HHcCCCEEEEecCCChHHHHHHH
Q 005313 208 ALQSRDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 208 il~grdvlv~ApTGsGKTla~ll 230 (703)
+..+.-+++.+++|+|||..++.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 34566788899999999975443
No 248
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.55 E-value=1.3 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=17.8
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHL 236 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l 236 (703)
.+++|.+.||||||.+.-..++..+
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999965443333333
No 249
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=85.45 E-value=0.57 Score=49.77 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhccCcccHHHHHHHH
Q 005313 529 YASDLIKLLEGAKQQVPRELRDMAS 553 (703)
Q Consensus 529 ~~~~l~~~l~~~~~~v~~~L~~la~ 553 (703)
.+..+.+.+...-...+..|.++..
T Consensus 233 ~l~~i~~~il~~y~~~~~~L~~i~~ 257 (358)
T 2pk2_A 233 LLDELTHEFLQILEKTPNRLKRIWN 257 (358)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccchhc
Confidence 3444444444444444455666554
No 250
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=85.19 E-value=2.6 Score=46.53 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=38.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~ 272 (703)
+..+.+.+-||++||++.. .+. .. . +..+|||+|+..+|.|++++++.|...
T Consensus 14 ~~~~~l~g~~gs~ka~~~a--~l~--~~-~-----~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVA--EIA--ER-H-----AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TCEEEEECCCTTHHHHHHH--HHH--HH-S-----SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCeEEEeCCCchHHHHHHH--HHH--HH-h-----CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 4567888999999997432 211 11 1 226899999999999999999998654
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.02 E-value=1.3 Score=46.23 Aligned_cols=66 Identities=15% Similarity=0.048 Sum_probs=34.0
Q ss_pred HHHHHHHc-----CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHH-HHHHHHHHHHh
Q 005313 203 QSWPIALQ-----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL-ATQIQDEAVKF 269 (703)
Q Consensus 203 ~ai~~il~-----grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreL-a~Q~~~~~~k~ 269 (703)
..++.++. +.-+++.+++|+|||..++..+.. ..........+.+++++.-...+ ..++.+.++++
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~-~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN-VQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH-TTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH-HhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34566664 356788899999999654432222 11100000113478887754322 34444444444
No 252
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=84.95 E-value=2.6 Score=40.35 Aligned_cols=20 Identities=25% Similarity=-0.011 Sum_probs=15.2
Q ss_pred CCCEEEEecCCChHHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ll 230 (703)
+.-+++.+++|+|||..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 35578889999999975443
No 253
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.80 E-value=1 Score=46.23 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=13.9
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
+.+++.+|+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788899999999754
No 254
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.80 E-value=1.7 Score=47.53 Aligned_cols=44 Identities=16% Similarity=-0.049 Sum_probs=27.3
Q ss_pred HHHHHHcC----CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 204 SWPIALQS----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 204 ai~~il~g----rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
.++.++.| .-++|.|++|+|||..++-.+...... +.+++|++-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-------TCEEEEECS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-------CCEEEEEEC
Confidence 35555533 446778999999996554433333332 347888874
No 255
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=84.10 E-value=4.2 Score=41.73 Aligned_cols=18 Identities=11% Similarity=-0.040 Sum_probs=14.9
Q ss_pred cCCCEEEEecCCChHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla 227 (703)
.++.++|.++.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 357788899999999963
No 256
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.77 E-value=10 Score=41.07 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCCCCcCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNA---GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~---g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ 228 (703)
|-.+|++.+=-+++.+.|... -+..|--++..- +.-.+.+|+.+|+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 457888876556666665431 001111111100 011357999999999999754
No 257
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.71 E-value=4.8 Score=41.52 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=12.9
Q ss_pred EEEEecCCChHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYL 229 (703)
Q Consensus 214 vlv~ApTGsGKTla~l 229 (703)
+++++++|+|||....
T Consensus 107 i~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEcCCCChHHHHHH
Confidence 5677999999997544
No 258
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.36 E-value=1.1 Score=47.58 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=24.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
++-+++.+++|+|||..++..+...... +.+++|+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeC
Confidence 3567888999999997655443333322 336777775
No 259
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.39 E-value=1.7 Score=51.08 Aligned_cols=16 Identities=44% Similarity=0.596 Sum_probs=14.2
Q ss_pred CCEEEEecCCChHHHH
Q 005313 212 RDIVAIAKTGSGKTLG 227 (703)
Q Consensus 212 rdvlv~ApTGsGKTla 227 (703)
+.+|+.+|+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999964
No 260
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=81.80 E-value=5.3 Score=39.13 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-ccCCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAA-RGLDIKD 486 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~-~GIDIp~ 486 (703)
.+.++||.|++++.+.++++.+.+ .+.+..++++.+..+....+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999999998877764 5678889999887766554432 478999994 222 3457788
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+.+||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888775
No 261
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=81.06 E-value=5.3 Score=45.29 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=19.4
Q ss_pred HHHHHcCCCEEEEecCCChHHHHH
Q 005313 205 WPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 205 i~~il~grdvlv~ApTGsGKTla~ 228 (703)
-..+..+..+++.+|+|+|||..+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHH
Confidence 345567789999999999999754
No 262
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=80.89 E-value=3.7 Score=39.06 Aligned_cols=72 Identities=17% Similarity=0.324 Sum_probs=51.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh---hhc-CCCcEEEECHHHHHHHHHhccccccCcc
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DID-RGVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~-~g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
.++||.|++++-+..+.+.+++. ++.+..++|+....+... .+. ....|+|+| +.+. ..+++..++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccCC
Confidence 47999999999999999888775 477888888876543332 233 248899999 2222 367788888
Q ss_pred cEEEec
Q 005313 323 YLVLDE 328 (703)
Q Consensus 323 ~IViDE 328 (703)
+||.=+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887633
No 263
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=80.67 E-value=3.5 Score=45.38 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.6
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
+.+++++|+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999754
No 264
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=80.56 E-value=8.1 Score=42.75 Aligned_cols=51 Identities=8% Similarity=0.169 Sum_probs=27.0
Q ss_pred cCcccEEEecccccccC-CChHHHHHHHHHcCCCceEEEEeccCcHHHHHHH
Q 005313 319 NQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIA 369 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~-gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~ 369 (703)
..++++|||-+=++... .+...+..+...+.++.-++++.|+...+....+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a 233 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA 233 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH
Confidence 46788999987654211 1222333333334455557777887654333333
No 265
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.53 E-value=3.7 Score=52.72 Aligned_cols=121 Identities=18% Similarity=0.172 Sum_probs=65.1
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCch
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 289 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~ 289 (703)
.++++++++++|+|||..++..+...+.. +.+++|+.- .++.+++. +..++-+..--. +. .
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~-------Ge~~~Fit~-ee~~~~L~--a~~~G~dl~~l~--~~--~----- 1140 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDA-EHALDPIY--ARKLGVDIDNLL--CS--Q----- 1140 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECT-TSCCCHHH--HHHTTCCTTTCE--EE--C-----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEc-cccHHHHH--HHHcCCChhHhe--ee--c-----
Confidence 45789999999999997655444444433 447888764 45555655 334432221100 11 0
Q ss_pred hhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccccc-------CC----------ChHHHHHHHHHcCCCc
Q 005313 290 LKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-------MG----------FEPQIRKIVKEVPARR 352 (703)
Q Consensus 290 ~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~-------~g----------f~~~i~~il~~l~~~~ 352 (703)
.+ +-+....+... ......+++|||||+-.+.. ++ +...+.+++..+....
T Consensus 1141 -------pd----~~e~~~~i~~~-l~~~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~ 1208 (2050)
T 3cmu_A 1141 -------PD----TGEQALEICDA-LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1208 (2050)
T ss_dssp -------CS----SHHHHHHHHHH-HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred -------Cc----chHHHHHHHHH-HHHhCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 00 12222222221 11245688999999886521 11 2234556666665566
Q ss_pred eEEEEeccC
Q 005313 353 QTLMYTATW 361 (703)
Q Consensus 353 q~L~lSAT~ 361 (703)
-+++++...
T Consensus 1209 stiI~tN~~ 1217 (2050)
T 3cmu_A 1209 TLLIFINQI 1217 (2050)
T ss_dssp CEEEEEECC
T ss_pred eEEEEecCC
Confidence 677777554
No 266
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=80.47 E-value=8.7 Score=37.92 Aligned_cols=72 Identities=17% Similarity=0.315 Sum_probs=52.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc--ccCCC
Q 005313 417 EPGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAA--RGLDI 484 (703)
Q Consensus 417 ~~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~--~GIDI 484 (703)
..+.++||.|+++..+.++++.+.+ .+.+..++++....+....+ .....|+|+|. .+. ..+++
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCc
Confidence 3445799999999999988877753 46788899988865544333 24678999994 222 45677
Q ss_pred CCccEEEE
Q 005313 485 KDIRVVVN 492 (703)
Q Consensus 485 p~v~~VI~ 492 (703)
..+.+||.
T Consensus 185 ~~~~~lVi 192 (249)
T 3ber_A 185 RALKYLVM 192 (249)
T ss_dssp TTCCEEEE
T ss_pred cccCEEEE
Confidence 88888775
No 267
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=80.36 E-value=4 Score=50.16 Aligned_cols=87 Identities=20% Similarity=0.204 Sum_probs=49.7
Q ss_pred EEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhc
Q 005313 215 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294 (703)
Q Consensus 215 lv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~ 294 (703)
+|.|..|||||.+.+--+...+.... .+.++|+|||.. +.-++.+.+ ....+..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~----~~~~il~lVP~q-~TFt~~~rl---~~~l~~~------------------ 58 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP----FGKPIIFLVPDQ-MTFLMEYEL---AKTPDMG------------------ 58 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT----TSSCEEEECCGG-GHHHHHHHH---TCCSSCS------------------
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC----CCCcEEEEecCc-ccHHHHHHH---HHhhhhc------------------
Confidence 67899999999876655555444421 235899999964 322222222 2211100
Q ss_pred CCCcEEEECHHHHHHHHHhccccccCcccEEEeccc
Q 005313 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330 (703)
Q Consensus 295 ~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH 330 (703)
....|-|.|..+|...+....- .....|+|+.+
T Consensus 59 ~~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~ 91 (1166)
T 3u4q_B 59 GMIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTG 91 (1166)
T ss_dssp EESSEEEECHHHHHHHHHHHHS---CTTSCEECHHH
T ss_pred ceeeeEEecHHHHHHHHHHHcC---CCcccCcCHHH
Confidence 0036899999998654443221 23456777765
No 268
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.19 E-value=13 Score=40.04 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=28.1
Q ss_pred cCcccEEEecccccccC-CChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHH
Q 005313 319 NQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAA 370 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~-gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~ 370 (703)
..+++||||=+=++... .....+..+...+.+..-++.+.|+-..+....+.
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~ 231 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHH
Confidence 46789999976544211 12233334444455555567777765444444443
No 269
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=80.16 E-value=8.7 Score=44.67 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.6
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
..++++++++|+|||..+-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 3679999999999997543
No 270
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=79.88 E-value=4.7 Score=36.96 Aligned_cols=73 Identities=21% Similarity=0.389 Sum_probs=51.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh---hhhcC-CCcEEEECHHHHHHHHHhccccccCcc
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
.++||.|+++..+.++.+.+.+. ++.+..++++....+.. ..+.. ...|+|+|. .+ ...+++..++
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~~ 105 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENIS 105 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcCC
Confidence 37999999999999999888775 57788888886544332 23333 478999992 22 3466777888
Q ss_pred cEEEecc
Q 005313 323 YLVLDEA 329 (703)
Q Consensus 323 ~IViDEa 329 (703)
+||.-+.
T Consensus 106 ~Vi~~~~ 112 (163)
T 2hjv_A 106 LVINYDL 112 (163)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8876443
No 271
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=79.23 E-value=4 Score=39.65 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-----c-cccCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-----A-ARGLDIK 485 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv-----~-~~GIDIp 485 (703)
.+.++||.|++++.+.++++.+.+ .+.+..++|+....++...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 346899999999999998887764 46688899998876654433 25789999952 1 2345666
Q ss_pred CccEEEE
Q 005313 486 DIRVVVN 492 (703)
Q Consensus 486 ~v~~VI~ 492 (703)
++.+||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7777665
No 272
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=79.20 E-value=1.6 Score=42.72 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=28.2
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k 268 (703)
+.-+++.+++|+|||..++-.+....... +..+++++-. +-..++.+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~------~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY------GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH------CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc------CCCceeeccc-CCHHHHHHHHHH
Confidence 45678889999999965443333322221 2357776532 234444444443
No 273
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=78.47 E-value=2.8 Score=43.91 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=33.0
Q ss_pred HHHHHHcC-----CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHH-HHHHHHHHHHh
Q 005313 204 SWPIALQS-----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL-ATQIQDEAVKF 269 (703)
Q Consensus 204 ai~~il~g-----rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreL-a~Q~~~~~~k~ 269 (703)
.++.++.+ .-+++.+++|+|||..++..+..... .......+.+++++.-...+ ..++.+.+..+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~-~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQL-PGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTS-CBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhc-ccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 46666643 45678899999999654432222111 00000123478888754321 23444444443
No 274
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=78.09 E-value=15 Score=37.62 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=24.4
Q ss_pred cCcccEEEecccccc--cC-CChHHHHHHHHHcCCCceEEEEeccCc
Q 005313 319 NQVSYLVLDEADRML--DM-GFEPQIRKIVKEVPARRQTLMYTATWP 362 (703)
Q Consensus 319 ~~~~~IViDEaH~ml--~~-gf~~~i~~il~~l~~~~q~L~lSAT~p 362 (703)
..+++||||=+=++. .. .....+.++...+....-++.+.++..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g 225 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG 225 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch
Confidence 467899999886543 10 011223333344455555667777643
No 275
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=77.91 E-value=1.3 Score=51.89 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=32.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAGF---SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~---~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~ 228 (703)
|-.+|++.+..+++.+.|...=. ..|..++..- +...+.+|+.+|+|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 45678888878888887765411 1111111000 011357899999999999643
No 276
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=77.90 E-value=4.1 Score=38.48 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=43.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCch---hhhhcC-CCcEEEECHHHHHHHHHhccccccCc
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 321 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~---~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~ 321 (703)
+.++||.|+++.-+..+.+.++.. ++.+..++|+....+. +..+.. ...|+|+|. .+. ..+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcccC
Confidence 347999999999999988888774 5778888887654433 333333 478999992 222 35667788
Q ss_pred ccEEE
Q 005313 322 SYLVL 326 (703)
Q Consensus 322 ~~IVi 326 (703)
++||.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87776
No 277
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.61 E-value=14 Score=38.39 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=35.8
Q ss_pred CcccEEEecccccc-cCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHh
Q 005313 320 QVSYLVLDEADRML-DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 372 (703)
Q Consensus 320 ~~~~IViDEaH~ml-~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~ 372 (703)
.++++++|.+-++- +......+..+...+.++..++.+.++...++...+..+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 46778999987643 223445666666667777788889888766666655554
No 278
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=77.58 E-value=8.3 Score=44.92 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.3
Q ss_pred CEEEEecCCChHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 213 dvlv~ApTGsGKTla~l 229 (703)
.+++++|||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999997543
No 279
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=77.08 E-value=8 Score=40.34 Aligned_cols=71 Identities=20% Similarity=0.384 Sum_probs=52.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc------ccccCCCCC
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV------AARGLDIKD 486 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv------~~~GIDIp~ 486 (703)
+.++||.|+++..++++++.+.+ .+.+..++++....+.... +..+..+|+|+|.- ....+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45899999999999988877754 4678889999887655443 44567889999941 123456777
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+.+||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 887775
No 280
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=76.71 E-value=2.2 Score=47.83 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=15.3
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
+..+++.+|+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567899999999999754
No 281
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=76.71 E-value=8.9 Score=37.37 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=43.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-cCCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAAR-GLDIKD 486 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~-GIDIp~ 486 (703)
.+.++||.|++++.+.++++.+.+ .+.+..++++....+ .++.+..+...|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 456899999999999999888864 345666777654332 33445567789999993 3333 356777
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+.+||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887775
No 282
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=76.33 E-value=9.4 Score=35.93 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc---CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc-cccCCCCCcc
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR---QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VA-ARGLDIKDIR 488 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~---~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~-~~GIDIp~v~ 488 (703)
.+.++||.|+++..+.++++.+.+ .+.+..++++....+....+. ...+|+|+|. .+ ...+++.++.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 356899999999999999888874 356788888876554433332 2578999995 22 2346677788
Q ss_pred EEEEe
Q 005313 489 VVVNY 493 (703)
Q Consensus 489 ~VI~~ 493 (703)
+||.-
T Consensus 147 ~iViD 151 (207)
T 2gxq_A 147 VAVLD 151 (207)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87763
No 283
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=76.15 E-value=10 Score=35.05 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=51.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh---hhhcC-CCcEEEECHHHHHHHHHhccccccCcc
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
.++||.|+++.-+..+.+.+.+. ++.+..++++....+.. ..+.. ...|+|+|. .+ ...+++..++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~~ 101 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIERVN 101 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-STTCCGGGCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hcCcchhhCC
Confidence 47999999999999998888775 57788888887544332 23333 488999992 11 2356777888
Q ss_pred cEEEecc
Q 005313 323 YLVLDEA 329 (703)
Q Consensus 323 ~IViDEa 329 (703)
+||.-+.
T Consensus 102 ~Vi~~d~ 108 (172)
T 1t5i_A 102 IAFNYDM 108 (172)
T ss_dssp EEEESSC
T ss_pred EEEEECC
Confidence 8876443
No 284
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=76.13 E-value=12 Score=41.47 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=51.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 476 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd 476 (703)
..++||.++++..+....+.|.+ .+.+..+|+..+..++..++..+..+..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46899999999999988888874 57888999999999999999999999999999995
No 285
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=76.08 E-value=8.4 Score=37.11 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc------cccccCCCCCc
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD------VAARGLDIKDI 487 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd------v~~~GIDIp~v 487 (703)
.+.++||.|++++.+.++++.+.+ .+.+..++++....++...+ . ...+|+|+|. .....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999999888864 46678888887655443322 2 3478999994 22335667788
Q ss_pred cEEEE
Q 005313 488 RVVVN 492 (703)
Q Consensus 488 ~~VI~ 492 (703)
.+||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87775
No 286
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.76 E-value=8.2 Score=36.37 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-cCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAAR-GLDIK 485 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~-GIDIp 485 (703)
.+.++||.|+++..+.++++.+.+ .+.+..++++....+.... + .....|+|+|. .+.. -+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 345899999999999988887753 4567888998876544322 2 35678999995 2222 34667
Q ss_pred CccEEEE
Q 005313 486 DIRVVVN 492 (703)
Q Consensus 486 ~v~~VI~ 492 (703)
++.+||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7787775
No 287
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=75.46 E-value=2.5 Score=40.18 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHcCC--CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHH
Q 005313 198 TPIQAQSWPIALQSR--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQ 261 (703)
Q Consensus 198 ~piQ~~ai~~il~gr--dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q 261 (703)
.+-|..++..++..+ -.+|.+.-|++||...+.-++..... .|..|.||+|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~------~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE------QGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH------TTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh------cCeEEEEEcCchHHHHH
Confidence 466888998887654 34556899999998754443333332 25689999999765544
No 288
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=75.43 E-value=2.4 Score=50.03 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.1
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
++.+++++|+|+|||+.+
T Consensus 238 ~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEECSCTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999643
No 289
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=74.95 E-value=3 Score=52.73 Aligned_cols=127 Identities=19% Similarity=0.205 Sum_probs=71.7
Q ss_pred HHHHHHHc------CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCce
Q 005313 203 QSWPIALQ------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276 (703)
Q Consensus 203 ~ai~~il~------grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~ 276 (703)
..++.+|. |+-+.+.+|.|||||..++-.+...... +..++|+.+--+|.... +++++-++.
T Consensus 1417 ~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~-------g~~~~~i~~e~~~~~~~---~~~~Gv~~~-- 1484 (1706)
T 3cmw_A 1417 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIY---ARKLGVDID-- 1484 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHH---HHHTTCCGG--
T ss_pred HHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhc-------CCeEEEEecCCCCCHHH---HHHcCCCHH--
Confidence 34455554 2557888999999997655433332222 45788888865555443 566653321
Q ss_pred EEEeeCCCCCCchhhhhcCCCcEEEECHHHH---HHHHHhccccccCcccEEEecccccccCC-----------------
Q 005313 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRL---NDILEMRRISLNQVSYLVLDEADRMLDMG----------------- 336 (703)
Q Consensus 277 v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L---~~~l~~~~~~l~~~~~IViDEaH~ml~~g----------------- 336 (703)
+++|+-|+.- +..+.. .+.-..+++||||.+-.+....
T Consensus 1485 ---------------------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~ 1542 (1706)
T 3cmw_A 1485 ---------------------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARM 1542 (1706)
T ss_dssp ---------------------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHH
T ss_pred ---------------------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHH
Confidence 3566666433 332221 2223457889999998765321
Q ss_pred ChHHHHHHHHHcCCCceEEEEeccCcH
Q 005313 337 FEPQIRKIVKEVPARRQTLMYTATWPR 363 (703)
Q Consensus 337 f~~~i~~il~~l~~~~q~L~lSAT~p~ 363 (703)
+...++++...+.+..-+++|...+..
T Consensus 1543 m~~~lr~l~~~~~~~~~~~i~~~~~~~ 1569 (1706)
T 3cmw_A 1543 MSQAMRKLAGNLKQSNTLLIFINQIRM 1569 (1706)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECBC-
T ss_pred HHHHHHHHHHHHHhCCcEEEEeecccc
Confidence 122345555555555556677666543
No 290
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=74.68 E-value=3 Score=45.32 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=14.5
Q ss_pred CEEEEecCCChHHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ll 230 (703)
.+++++++|+|||..+.-
T Consensus 101 vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CEEEECCSSSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578889999999976543
No 291
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=74.33 E-value=4.3 Score=44.03 Aligned_cols=68 Identities=18% Similarity=0.105 Sum_probs=45.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccE
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYL 324 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~I 324 (703)
+.++||+||+++-++++++.+++. ++.+..++|. .....+..+.. ..+|||||. .+ ...+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILATD-----IA-EMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEESS-----ST-TCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEECC-----hh-heeeccC-ceEE
Confidence 347999999999999999988875 5778888883 34444555554 489999993 22 2356777 8877
Q ss_pred E
Q 005313 325 V 325 (703)
Q Consensus 325 V 325 (703)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 292
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=74.33 E-value=6.2 Score=41.42 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.0
Q ss_pred cCcccEEEecccccccC
Q 005313 319 NQVSYLVLDEADRMLDM 335 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~ 335 (703)
.+.++|||||.-.+++.
T Consensus 230 ~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp SCEEEEEEETSSTTHHH
T ss_pred CCCCEEEEeCchHhhhh
Confidence 57899999999987654
No 293
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=74.31 E-value=4.6 Score=41.98 Aligned_cols=90 Identities=10% Similarity=0.043 Sum_probs=49.5
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhh
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 292 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~ 292 (703)
-+++.+++|+|||..++-.+...... ..+.+++++..-..+... .+++++-...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-----g~g~~vlyId~E~s~~~~---ra~~lGvd~d------------------ 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-----YPDAVCLFYDSEFGITPA---YLRSMGVDPE------------------ 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-----CTTCEEEEEESSCCCCHH---HHHHTTCCGG------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-----CCCceEEEEeccchhhHH---HHHHhCCCHH------------------
Confidence 46778999999997655444333322 113488888865444322 3455542211
Q ss_pred hcCCCcEEEECH---HHH-HHHHHhc-cccccCcccEEEecccccc
Q 005313 293 IDRGVDIVVATP---GRL-NDILEMR-RISLNQVSYLVLDEADRML 333 (703)
Q Consensus 293 l~~g~dIlV~Tp---~~L-~~~l~~~-~~~l~~~~~IViDEaH~ml 333 (703)
++++..| +.+ +.++..- .+.-..+++||||-+..|.
T Consensus 84 -----~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 -----RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 2344433 333 3332211 1333468999999999775
No 294
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=73.75 E-value=27 Score=34.08 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=49.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc-cccCCCCCc
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VA-ARGLDIKDI 487 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~-~~GIDIp~v 487 (703)
+.++||.|++++.+.++++.+.+ .+.+..++++....+....+ ....+|+|+|. .+ ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 45899999999999998887753 35677788887655433222 34678999995 12 223577788
Q ss_pred cEEEE
Q 005313 488 RVVVN 492 (703)
Q Consensus 488 ~~VI~ 492 (703)
.+||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88775
No 295
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=73.49 E-value=6.6 Score=37.66 Aligned_cols=18 Identities=28% Similarity=0.128 Sum_probs=14.2
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
+.-+.+++|+|+|||..+
T Consensus 25 G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456788899999999643
No 296
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=73.03 E-value=10 Score=42.92 Aligned_cols=58 Identities=12% Similarity=0.243 Sum_probs=51.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHH--hcCCCcEEEEcc
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQF--RAGRSPVLVATD 476 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F--~~G~~~ILVaTd 476 (703)
...+||.++++..+....+.|.+ .+.+..++++++..++..++..+ ..+..+|||+|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999988888874 67889999999999999998888 578899999996
No 297
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=72.99 E-value=8.1 Score=37.20 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=51.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh---hhcC-CCcEEEECHHHHHHHHHhccccccCcc
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DIDR-GVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
.++||.|+++.-++.+.+.+.+. ++.+..++|+.....+.. .+.. ..+|+|+| +.+ ...+++..++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~Gidi~~v~ 101 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVA-ARGLDIPQVD 101 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTT-TCSSSCCCBS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chh-hcCCCCccCc
Confidence 37999999999999988888775 477888898876544333 3333 47899999 222 3466778888
Q ss_pred cEEE
Q 005313 323 YLVL 326 (703)
Q Consensus 323 ~IVi 326 (703)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 298
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=72.97 E-value=5.9 Score=36.70 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=50.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh---hhhcC-CCcEEEECHHHHHHHHHhccccccCcc
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
.++||.|+++..+..+.+.+.+. ++.+..++|+....+.. ..+.. ...|+|+|. .+ ...+++..++
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~~ 104 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQVT 104 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccCC
Confidence 48999999999999988887764 57788888887654332 23333 478999992 22 2356777888
Q ss_pred cEEE
Q 005313 323 YLVL 326 (703)
Q Consensus 323 ~IVi 326 (703)
+||.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 299
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=72.64 E-value=8.5 Score=35.22 Aligned_cols=73 Identities=18% Similarity=0.347 Sum_probs=51.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh---hhhcC-CCcEEEECHHHHHHHHHhccccccCcc
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
.++||.|++++-+..+.+.+.+. ++.+..++++....+.. ..+.. ...|+|+|. .+ ...+++..++
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~~ 100 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQVS 100 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccCC
Confidence 47999999999999988888774 46788888887644332 23333 478999992 22 2356777888
Q ss_pred cEEEecc
Q 005313 323 YLVLDEA 329 (703)
Q Consensus 323 ~IViDEa 329 (703)
+||.-+.
T Consensus 101 ~Vi~~~~ 107 (165)
T 1fuk_A 101 LVINYDL 107 (165)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8776443
No 300
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=72.56 E-value=8.1 Score=37.47 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc--cCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAAR--GLDIK 485 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~--GIDIp 485 (703)
.+.++||.|+++..+.++++.+.+ .+.+..++++.+..+....+ ...+|+|+|. .+.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 356899999999999999888864 25678889887654433322 3678999994 2222 35667
Q ss_pred CccEEEE
Q 005313 486 DIRVVVN 492 (703)
Q Consensus 486 ~v~~VI~ 492 (703)
++.+||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777775
No 301
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=72.53 E-value=18 Score=39.86 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=28.9
Q ss_pred cCcccEEEecccccccC-CChHHHHHHH---HHcC---CCceEEEEeccCcHHHHHHHHHh
Q 005313 319 NQVSYLVLDEADRMLDM-GFEPQIRKIV---KEVP---ARRQTLMYTATWPREVRKIAADL 372 (703)
Q Consensus 319 ~~~~~IViDEaH~ml~~-gf~~~i~~il---~~l~---~~~q~L~lSAT~p~~v~~l~~~~ 372 (703)
..+++||||-+=++-.. .....+.+++ ..+. +..-+|.+.||...+....++.+
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f 434 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLF 434 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHH
Confidence 45678999987654221 1222333332 2221 33447788888765555555544
No 302
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.04 E-value=3.7 Score=51.99 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=26.7
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCc
Q 005313 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 255 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Pt 255 (703)
++.+++++++|+|||..++..+...+.. +.+++|+.-.
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~-------G~~vlYI~te 71 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAE 71 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhC-------CCceEEEEec
Confidence 5688999999999997655444444432 3478888764
No 303
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=71.93 E-value=4.7 Score=38.77 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=43.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc------ccccCCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV------AARGLDIKD 486 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv------~~~GIDIp~ 486 (703)
.+.++||.|+++..+.++++.+.+ .+.+..++++....+.... +. ..+|+|+|.- ....+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999988887764 4567888888765443322 22 3789999951 234566777
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+.+||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887775
No 304
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=71.69 E-value=4.1 Score=43.98 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=30.9
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 260 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~ 260 (703)
...+++|+++||+|||..+ ..++..+.. .+..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH------CCCcEEEEeCCCchhH
Confidence 3478999999999999864 233333332 1457899999888864
No 305
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=71.11 E-value=11 Score=40.04 Aligned_cols=70 Identities=31% Similarity=0.478 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhcCC-----ceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----cccCCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTRQF-----GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VA-----ARGLDIKD 486 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~~~-----~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-v~-----~~GIDIp~ 486 (703)
...++||.|+++..+..+++.|.+.+ .+..+||+....++..... ..+|+|+|. .+ ..-+++.+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 45799999999999999988887533 7889999998877655443 357999994 11 22456677
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 787775
No 306
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=70.17 E-value=2.2 Score=34.34 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=20.4
Q ss_pred CCCCCCCCCcccccc-CC------ccceEeecCCCCc
Q 005313 18 PEDPTLPKPWKGLVD-GR------TGYLYFWNPETNV 47 (703)
Q Consensus 18 ~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~ 47 (703)
.+||.||+.|+-.+= .. ..-+||.+|+...
T Consensus 6 ~~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk 42 (75)
T 1d9n_A 6 LDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDR 42 (75)
T ss_dssp EECTTTCSSCEEEECSSSSSCTTCCCCEEEECSSSCE
T ss_pred ccCCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCe
Confidence 368999999975442 22 3448999995443
No 307
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=70.08 E-value=4.8 Score=41.51 Aligned_cols=28 Identities=21% Similarity=0.001 Sum_probs=19.4
Q ss_pred HHHHHHHcC-----CCEEEEecCCChHHHHHHH
Q 005313 203 QSWPIALQS-----RDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 203 ~ai~~il~g-----rdvlv~ApTGsGKTla~ll 230 (703)
..++.++.+ .-+++.+++|+|||..++-
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~ 117 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQ 117 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHH
Confidence 345666643 4578889999999965443
No 308
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=69.81 E-value=9.8 Score=46.19 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhc-----CC----ceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccCC-CC
Q 005313 417 EPGSKIIVFCSTKKMCDQLARNLTR-----QF----GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAARGLD-IK 485 (703)
Q Consensus 417 ~~~~kvLVF~~s~~~a~~la~~L~~-----~~----~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-v~~~GID-Ip 485 (703)
..+.++||.++++..+.++++.+.+ .+ .+..+||+.+..++...++.+++ .+|||+|. .+..-+. +.
T Consensus 97 ~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc
Confidence 3567899999999999998888864 24 68899999999888888887777 89999995 1111111 55
Q ss_pred CccEEEE
Q 005313 486 DIRVVVN 492 (703)
Q Consensus 486 ~v~~VI~ 492 (703)
.+.+||.
T Consensus 175 ~l~~lVi 181 (1054)
T 1gku_B 175 HFDFIFV 181 (1054)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 7777775
No 309
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=68.19 E-value=6.9 Score=43.15 Aligned_cols=37 Identities=11% Similarity=-0.050 Sum_probs=22.3
Q ss_pred CCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
.-++|.+++|+|||..++-.+...... .+.++++++-
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~------~g~~vl~~s~ 279 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTA------MGKKVGLAML 279 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTT------SCCCEEEEES
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHh------cCCcEEEEec
Confidence 456778999999996544333332211 1336777764
No 310
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=68.12 E-value=2.4 Score=33.83 Aligned_cols=29 Identities=28% Similarity=0.665 Sum_probs=20.8
Q ss_pred CCCCCCCCcccccc-CCcc------ceEeecCCCCc
Q 005313 19 EDPTLPKPWKGLVD-GRTG------YLYFWNPETNV 47 (703)
Q Consensus 19 ~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~ 47 (703)
++|.||..|+-.+= ..+| -+||..|....
T Consensus 9 ~~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP~Gkr 44 (72)
T 2ky8_A 9 DCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKK 44 (72)
T ss_dssp ECSSSCTTCEEEEEECCSSTTTTCEEEEEECTTCCE
T ss_pred cCCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCE
Confidence 78999999976553 3333 48999996543
No 311
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=68.10 E-value=18 Score=35.82 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc--ccCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAA--RGLDIK 485 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~--~GIDIp 485 (703)
.+.++||.++++..+.++++.+.+ ...+..++++......... +..+ .+|+|+|. .+. ..+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356899999999999999888865 3456778888776554333 3333 78999994 222 246778
Q ss_pred CccEEEE
Q 005313 486 DIRVVVN 492 (703)
Q Consensus 486 ~v~~VI~ 492 (703)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888775
No 312
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=67.98 E-value=1.4 Score=46.66 Aligned_cols=9 Identities=22% Similarity=0.671 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 005313 531 SDLIKLLEG 539 (703)
Q Consensus 531 ~~l~~~l~~ 539 (703)
..++++++.
T Consensus 239 ~~il~~y~~ 247 (358)
T 2pk2_A 239 HEFLQILEK 247 (358)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHh
Confidence 334444333
No 313
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=66.72 E-value=3.6 Score=34.73 Aligned_cols=33 Identities=30% Similarity=0.667 Sum_probs=22.4
Q ss_pred CcccCCCCCCCCCCcccccc-CCc------cceEeecCCCCc
Q 005313 13 SVRYAPEDPTLPKPWKGLVD-GRT------GYLYFWNPETNV 47 (703)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~ 47 (703)
+|+| +||.||+.|+-.+= ..+ .-+||.+|+.+.
T Consensus 16 ~~~~--~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP~Gkk 55 (97)
T 3c2i_A 16 GPMY--DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKA 55 (97)
T ss_dssp CCCC--CCTTSCTTCEEEEEECCSSTTTTCEEEEEECTTSCE
T ss_pred Cccc--CCCCCCCCCEEEEEEecCCCCCCcceEEEECCCCCE
Confidence 4445 78999999965442 232 358999996553
No 314
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=66.72 E-value=32 Score=37.14 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=14.7
Q ss_pred CEEEEecCCChHHHHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYLLPG 232 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~ 232 (703)
.++++++.|+|||.+..-.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46667999999998655433
No 315
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=66.25 E-value=12 Score=39.31 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=51.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh---hhc-CCCcEEEECHHHHHHHHHhccccccCc
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DID-RGVDIVVATPGRLNDILEMRRISLNQV 321 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~-~g~dIlV~Tp~~L~~~l~~~~~~l~~~ 321 (703)
+.++||.|++++.++.+.+.+.+. ++.+..++++....+... .+. ...+|+|+|. .+. ..+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcccC
Confidence 458999999999999998888774 567888888876543332 232 2478999993 333 46778888
Q ss_pred ccEEE
Q 005313 322 SYLVL 326 (703)
Q Consensus 322 ~~IVi 326 (703)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88775
No 316
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=66.03 E-value=3.8 Score=42.72 Aligned_cols=20 Identities=30% Similarity=0.177 Sum_probs=15.3
Q ss_pred CCCEEEEecCCChHHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ll 230 (703)
+..+++.+++|+|||..++.
T Consensus 123 gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45578889999999965443
No 317
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=65.75 E-value=26 Score=38.74 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=55.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh---hhc-CCCcEEEECHHHHHHHHHhccccccCc
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DID-RGVDIVVATPGRLNDILEMRRISLNQV 321 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~-~g~dIlV~Tp~~L~~~l~~~~~~l~~~ 321 (703)
+.++||.|+++.-+..+.+.+.+... .++.+..++++........ .+. ...+|||||. . ....+++..+
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----h-hhcCCCcccC
Confidence 45899999999999999999887643 2577888888876544332 222 3488999993 2 2346788889
Q ss_pred ccEEEeccc
Q 005313 322 SYLVLDEAD 330 (703)
Q Consensus 322 ~~IViDEaH 330 (703)
++||.-..-
T Consensus 412 ~~VI~~~~p 420 (563)
T 3i5x_A 412 HEVLQIGVP 420 (563)
T ss_dssp CEEEEESCC
T ss_pred CEEEEECCC
Confidence 988865543
No 318
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=65.14 E-value=15 Score=38.18 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc------ccccCCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV------AARGLDIKD 486 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv------~~~GIDIp~ 486 (703)
.+.++||.|+++..+.++++.+.+ .+.+..++++....+....+. ..+|+|+|.- ....+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456999999999999988887753 467888999988766555443 4679999941 123455667
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+.+||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777775
No 319
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=64.49 E-value=21 Score=42.18 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=14.2
Q ss_pred CEEEEecCCChHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 213 dvlv~ApTGsGKTla~l 229 (703)
.+++.+|||+|||..+-
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58889999999997543
No 320
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=64.48 E-value=21 Score=38.24 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=50.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-cCCCCCc
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAAR-GLDIKDI 487 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~-GIDIp~v 487 (703)
+.++||.|++++.+.++++.+.+ .+.+..++|+.+..+....+ ....+|+|+|. .+.+ -+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 45899999999999999887764 35678889998876544333 24678999994 2333 3567778
Q ss_pred cEEEE
Q 005313 488 RVVVN 492 (703)
Q Consensus 488 ~~VI~ 492 (703)
.+||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 87775
No 321
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=62.76 E-value=8.6 Score=40.52 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.8
Q ss_pred CCCEEEEecCCChHHHH
Q 005313 211 SRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 211 grdvlv~ApTGsGKTla 227 (703)
+..+++++|||||||..
T Consensus 123 ~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34678889999999963
No 322
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=62.67 E-value=13 Score=38.00 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=51.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhh---hcC-CCcEEEECHHHHHHHHHhccccccCcc
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD---IDR-GVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
.++||.|++++-++.+.+.+.+. ++.+..++|+....++... +.. ..+|+|+| +.+ ...+++..++
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va-~~Gidi~~v~ 98 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVA-ARGLDIPQVD 98 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STT-TCSTTCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chh-hcCcccccee
Confidence 37999999999988888777653 6788889998776544333 222 48899999 222 3467788888
Q ss_pred cEEEec
Q 005313 323 YLVLDE 328 (703)
Q Consensus 323 ~IViDE 328 (703)
+||.=+
T Consensus 99 ~VI~~d 104 (300)
T 3i32_A 99 LVVHYR 104 (300)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 887533
No 323
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=62.52 E-value=35 Score=38.00 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=55.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh---hhc-CCCcEEEECHHHHHHHHHhccccccCc
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DID-RGVDIVVATPGRLNDILEMRRISLNQV 321 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~-~g~dIlV~Tp~~L~~~l~~~~~~l~~~ 321 (703)
+.++||.|+++.-++.+++.+++... .++.+..++++....+... .+. ...+|||||. .+ ...+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcccC
Confidence 35899999999999999999987643 2577888888876543322 232 3488999993 22 346778889
Q ss_pred ccEEEeccc
Q 005313 322 SYLVLDEAD 330 (703)
Q Consensus 322 ~~IViDEaH 330 (703)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 988866543
No 324
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=61.87 E-value=19 Score=36.02 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.5
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
...+++.+|+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999654
No 325
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.66 E-value=6.4 Score=37.74 Aligned_cols=71 Identities=11% Similarity=0.237 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc---------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-cC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR---------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAAR-GL 482 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~---------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~-GI 482 (703)
.+.++||.|+++..+.++++.+.+ .+.+..++++....+... .+ ....+|+|+|. .+.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 346899999999999888877653 356777888875433211 11 23578999994 2222 35
Q ss_pred CCCCccEEEE
Q 005313 483 DIKDIRVVVN 492 (703)
Q Consensus 483 DIp~v~~VI~ 492 (703)
++..+.+||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 5667777665
No 326
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=60.52 E-value=21 Score=38.67 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=8.3
Q ss_pred CCCCCCCCCccccCCC
Q 005313 685 GGRDDGYGDEEEEGMI 700 (703)
Q Consensus 685 ~~~~~~~~~~~~~~~~ 700 (703)
+.-++||...|.-=|+
T Consensus 417 ~~~~~~~~~~~~~~~~ 432 (437)
T 3pgw_S 417 SEGGDGYLAPENGYLM 432 (437)
T ss_pred CCCCCcccCCCccccc
Confidence 3336666665544443
No 327
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=60.27 E-value=48 Score=33.68 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-----c-cccCCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-----A-ARGLDIKD 486 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv-----~-~~GIDIp~ 486 (703)
.+.++||.|+++..++++++.+.+ .+.+..++++....+....+. ..+|+|+|.- + ...+++.+
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 456899999999999999888864 356778888887655443332 5689999941 1 22356677
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+.+||.
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777775
No 328
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=59.85 E-value=11 Score=43.16 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=47.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccE
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYL 324 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~I 324 (703)
+.++||+||+++-++++++.+++. ++.+..+++. .....+..+.. ..+||||| +.+. ..+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhh-cceeeC-CcEE
Confidence 458999999999999988888765 5778888884 33334444544 47899999 2333 356676 7766
Q ss_pred E
Q 005313 325 V 325 (703)
Q Consensus 325 V 325 (703)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 329
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=59.36 E-value=29 Score=38.38 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhccccccCcccEEEecccccccCC-----ChHHHHHHHHHcCC-CceEEEEecc
Q 005313 303 TPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-----FEPQIRKIVKEVPA-RRQTLMYTAT 360 (703)
Q Consensus 303 Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ml~~g-----f~~~i~~il~~l~~-~~q~L~lSAT 360 (703)
+.+.....+.. .+...+.++|||| -=..++.. ....+..++..+.. ..-+|+.|-.
T Consensus 355 S~g~~q~~~~a-~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~ 416 (525)
T 1tf7_A 355 GLEDHLQIIKS-EINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTS 416 (525)
T ss_dssp CHHHHHHHHHH-HHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHH-HHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 34444443332 2234567899999 65566666 55666666665543 3334444443
No 330
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=59.13 E-value=1.1e+02 Score=34.71 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=56.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh---hhcC-CCcEEEECHHHHHHHHHhccccccCc
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DIDR-GVDIVVATPGRLNDILEMRRISLNQV 321 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~ 321 (703)
+.++||.|+|+..++.+.+.+.+. ++.+..++++....+... .+.. ..+|+|+|. .+ ...+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCC
Confidence 358999999999999988888775 467777887654433322 2332 488999983 22 346778899
Q ss_pred ccEEEeccccc
Q 005313 322 SYLVLDEADRM 332 (703)
Q Consensus 322 ~~IViDEaH~m 332 (703)
++||+-|++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999998864
No 331
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=58.47 E-value=4.9 Score=39.33 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc---cCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAAR---GLDI 484 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~---GIDI 484 (703)
.+.++||.|++++.+.++++.+.+ .+.+..++++.... ...........+|+|+|. .+.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 445899999999999999888864 34455555432211 111122345678999994 2222 4778
Q ss_pred CCccEEEEe
Q 005313 485 KDIRVVVNY 493 (703)
Q Consensus 485 p~v~~VI~~ 493 (703)
.++.+||.-
T Consensus 174 ~~~~~lViD 182 (245)
T 3dkp_A 174 ASVEWLVVD 182 (245)
T ss_dssp TTCCEEEES
T ss_pred ccCcEEEEe
Confidence 888887763
No 332
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=62.85 E-value=2.1 Score=39.76 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=46.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh---hhhcC-CCcEEEECHHHHHHHHHhccccccCcc
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
.++||.|+++..+..+.+.+++. ++.+..++|+....+.. ..+.. ...|+|+| .. + ...+++..++
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~----~-~~Gid~~~~~ 100 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DV----A-ARGIDIPDVS 100 (170)
Confidence 47899999999988888777664 56677778776543332 23333 36799998 22 2 2355666677
Q ss_pred cEEEec
Q 005313 323 YLVLDE 328 (703)
Q Consensus 323 ~IViDE 328 (703)
+||.-+
T Consensus 101 ~Vi~~~ 106 (170)
T 2yjt_D 101 HVFNFD 106 (170)
Confidence 776533
No 333
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=58.01 E-value=52 Score=34.32 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-cCCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAAR-GLDIKD 486 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~-GIDIp~ 486 (703)
.+.++||.|+++..+.++++.+.+ .+.+..++++....+....+. ....|+|+|. .+.. .+++..
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 457999999999999999887764 356777888887665544332 2457999994 3323 456667
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+.+||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 777765
No 334
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=57.92 E-value=13 Score=38.92 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=51.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhh---hhcC-CCcEEEECHHHHHHHHHhccccccCcc
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DIDR-GVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
.++||.|+++.-+..+++.+.+. ++.+..++++....+... .+.. ..+|+|+|. . ....+++..++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCccCCC
Confidence 48999999999999999988875 467778888876544332 3333 478999993 2 23467788889
Q ss_pred cEEEe
Q 005313 323 YLVLD 327 (703)
Q Consensus 323 ~IViD 327 (703)
+||.-
T Consensus 337 ~Vi~~ 341 (412)
T 3fht_A 337 VVINF 341 (412)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 88753
No 335
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=57.55 E-value=9.1 Score=40.59 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=26.8
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE 257 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~Ptre 257 (703)
.+.+++++++||+|||...-. ++..+.. .+.+++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH------CCCEEEEEeCCcC
Confidence 457899999999999965433 2222222 1347888877654
No 336
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=57.15 E-value=16 Score=38.08 Aligned_cols=20 Identities=45% Similarity=0.464 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCChHHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~l 229 (703)
....+++.+|+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34689999999999997543
No 337
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.94 E-value=52 Score=34.24 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=49.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-ccCCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAA-RGLDIKD 486 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~-~GIDIp~ 486 (703)
.+.++||.|+++..+.++++.+.+ ...+..++++..... .++.+..+..+|+|+|. .+. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 456899999999999998888864 245666667665433 34455667889999994 222 2355666
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+.+||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777765
No 338
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=56.88 E-value=14 Score=34.68 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=20.3
Q ss_pred CcEEEECHHHHHHHHHhccccccCcccEEEecccc
Q 005313 297 VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331 (703)
Q Consensus 297 ~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~ 331 (703)
.+++-+..+.|...+..- ...+++||||=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCCC
Confidence 456666666676666532 23589999996543
No 339
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=56.37 E-value=5.3 Score=40.10 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=15.4
Q ss_pred HcCCCEEEEecCCChHHHH
Q 005313 209 LQSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 209 l~grdvlv~ApTGsGKTla 227 (703)
..+.-+++++|||+|||..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp CSSEEEEEECSTTCSHHHH
T ss_pred CCCCEEEEECCCCccHHHH
Confidence 3556788899999999964
No 340
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=56.20 E-value=22 Score=39.02 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=46.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccc-C-CCCC
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAARG-L-DIKD 486 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~G-I-DIp~ 486 (703)
+.++||.|+++..+.++++.+.+ .+.+..+||+.+..++...+. ....|+|+|. .+..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 57899999999999888887764 577899999986655433222 1367999994 22222 3 5677
Q ss_pred ccEEEEe
Q 005313 487 IRVVVNY 493 (703)
Q Consensus 487 v~~VI~~ 493 (703)
+.+||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8887763
No 341
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=55.65 E-value=11 Score=40.77 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=13.1
Q ss_pred CCEEEEecCCChHHHH
Q 005313 212 RDIVAIAKTGSGKTLG 227 (703)
Q Consensus 212 rdvlv~ApTGsGKTla 227 (703)
.-+++++|||||||..
T Consensus 168 gii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTT 183 (418)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3567889999999963
No 342
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=55.54 E-value=1.3e+02 Score=34.29 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=55.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh---hhhcC-CCcEEEECHHHHHHHHHhccccccCc
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQV 321 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~ 321 (703)
+.++||.|+|+..++.+.+.+.+. ++.+..++++....+.. ..+.. ..+|+|+| +.+ ...+++..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCCC
Confidence 358999999999999988888775 46777778765443332 22343 48899998 222 346778889
Q ss_pred ccEEEeccccc
Q 005313 322 SYLVLDEADRM 332 (703)
Q Consensus 322 ~~IViDEaH~m 332 (703)
++||+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99998888754
No 343
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=55.09 E-value=27 Score=35.47 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=65.1
Q ss_pred HHHHHHhcC---CCCeEEEEcCCHHHHHHHHHHHhc------CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc---
Q 005313 409 LEQILRSQE---PGSKIIVFCSTKKMCDQLARNLTR------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD--- 476 (703)
Q Consensus 409 L~~ll~~~~---~~~kvLVF~~s~~~a~~la~~L~~------~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd--- 476 (703)
+..++.... ...++||.|++++.|.++++.+.+ .+.+..++++...... .....+|||+|.
T Consensus 149 ~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l 221 (300)
T 3fmo_B 149 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTV 221 (300)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHH
T ss_pred HHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHH
Confidence 444454432 234799999999999998777653 3456666666542211 134568999995
Q ss_pred --ccc--ccCCCCCccEEEEecCC-----CCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHH
Q 005313 477 --VAA--RGLDIKDIRVVVNYDFP-----TGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIK 535 (703)
Q Consensus 477 --v~~--~GIDIp~v~~VI~~d~P-----~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~ 535 (703)
.+. ..+++.++.+||.-..- ......+.++-+..+ ...-+++++..-......+.+
T Consensus 222 ~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~---~~~q~i~~SAT~~~~v~~~a~ 286 (300)
T 3fmo_B 222 LDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP---RNCQMLLFSATFEDSVWKFAQ 286 (300)
T ss_dssp HHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC---TTCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC---CCCEEEEEeccCCHHHHHHHH
Confidence 221 35678888888763221 123333344433332 233455666554444444433
No 344
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=54.73 E-value=47 Score=38.73 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=52.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhc-------CCCCceEEEeeCCCCCCchhhhhc--------C-CCcEEEECHHHHHH
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKFG-------KSSRISCTCLYGGAPKGPQLKDID--------R-GVDIVVATPGRLND 309 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~~-------~~~~i~v~~~~gg~~~~~~~~~l~--------~-g~dIlV~Tp~~L~~ 309 (703)
...+||.+|++.-++++.+.+.+.. ...++.+..++++....++...+. . ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 3489999999999999888887522 235688889999887555443332 2 367999993
Q ss_pred HHHhccccccCcccEEE
Q 005313 310 ILEMRRISLNQVSYLVL 326 (703)
Q Consensus 310 ~l~~~~~~l~~~~~IVi 326 (703)
.+. ..+++..+.+||-
T Consensus 378 iae-~GidIp~v~~VId 393 (773)
T 2xau_A 378 IAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HHH-HTCCCTTEEEEEE
T ss_pred HHH-hCcCcCCeEEEEe
Confidence 333 3567788886664
No 345
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=54.68 E-value=35 Score=35.54 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-ccCCCCC
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAA-RGLDIKD 486 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~-~GIDIp~ 486 (703)
.+.++||.|+++..+.++++.+.+ .+.+..++++....+.... .....+|+|+|. .+. ..+++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 345899999999999988887764 4567788888775443221 245778999994 222 3356777
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+.+||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887775
No 346
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=54.01 E-value=15 Score=40.63 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHH
Q 005313 194 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 194 ~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla 227 (703)
+.--...-..++-.+..+.++++.+|+|+|||..
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3333344455566677889999999999999964
No 347
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=53.78 E-value=19 Score=41.16 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=47.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEE
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLV 325 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IV 325 (703)
+.++||.+++++-++++++.+++. ++.+..++++....+. ...+.+|||+| +.+.. .++++ +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaer-GIDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMT-GYTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHH-HCCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHc-cCCCC-CcEEE
Confidence 358999999999999988888764 5788889998765432 23456999999 33443 44564 77666
No 348
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=53.67 E-value=9.2 Score=39.28 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCEEEEecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv~ApTGsGKTla~ 228 (703)
.++..+..++++++.+|+|+|||..+
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 33445566889999999999999643
No 349
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=53.41 E-value=12 Score=36.71 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=18.3
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHh
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLK 237 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~ 237 (703)
++++.++.|+|||..++-.+.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5788899999999876654444443
No 350
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=53.38 E-value=32 Score=36.14 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=18.4
Q ss_pred ecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 218 AKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 218 ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
+.-|.|||.+++-.+...... +.+||+|=
T Consensus 151 ~KGGvGKTT~a~nLA~~La~~-------g~rVlliD 179 (373)
T 3fkq_A 151 PCGGVGTSTVAAACAIAHANM-------GKKVFYLN 179 (373)
T ss_dssp SSTTSSHHHHHHHHHHHHHHH-------TCCEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHhC-------CCCEEEEE
Confidence 588999998766544444333 33666664
No 351
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=52.95 E-value=19 Score=44.29 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=38.3
Q ss_pred CEEEEecCCChHHHHHHHHHHHHHhhcc-----CCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCR-----NDPRLGPTVLVLSPTRELATQIQDEAVK 268 (703)
Q Consensus 213 dvlv~ApTGsGKTla~llp~l~~l~~~~-----~~~~~g~~vLIl~PtreLa~Q~~~~~~k 268 (703)
..+|.|.-|||||.+...-++..+.... ..+-....+|+|+=|+.-+.++.+.+++
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4599999999999876665566654321 1111223799999999888877766654
No 352
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=52.93 E-value=7.8 Score=48.27 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=30.2
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
+.+-++||+|||---+|..-+..+++.+..+.+++-+|+.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 45668899999988888777777888777776666445443
No 353
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=52.93 E-value=1.5e+02 Score=27.63 Aligned_cols=125 Identities=13% Similarity=0.022 Sum_probs=50.8
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHHHhhcc------CCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc-eEEEeeC
Q 005313 210 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCR------NDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI-SCTCLYG 282 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~llp~l~~l~~~~------~~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i-~v~~~~g 282 (703)
.+-.+-+....|-|=|+.+.+|+........ .....+.++|||-........+...+.++. + .+
T Consensus 19 hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g----~~~v----- 89 (206)
T 3mm4_A 19 HMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMG----VSEV----- 89 (206)
T ss_dssp ------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTT----CSEE-----
T ss_pred cCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcC----CCee-----
Confidence 3445666678888989888888643221110 111234578888887777666666666542 2 11
Q ss_pred CCCCCchhhhhcCCCcEEEECHHHHHHHHHhc--------cccccCcccEEEecccccccCCChHHHHHHHHH---cCCC
Q 005313 283 GAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--------RISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE---VPAR 351 (703)
Q Consensus 283 g~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~--------~~~l~~~~~IViDEaH~ml~~gf~~~i~~il~~---l~~~ 351 (703)
+.+.+....++.+... ...-..+++||+|= .|.++.-...+..|... ..+.
T Consensus 90 ----------------~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~~ 151 (206)
T 3mm4_A 90 ----------------EQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGVR 151 (206)
T ss_dssp ----------------EEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTCC
T ss_pred ----------------eeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCCC
Confidence 2233444455555432 11223578899993 24444333344444332 2466
Q ss_pred ceEEEEeccC
Q 005313 352 RQTLMYTATW 361 (703)
Q Consensus 352 ~q~L~lSAT~ 361 (703)
..+|++|+..
T Consensus 152 ~piI~ls~~~ 161 (206)
T 3mm4_A 152 TPIIAVSGHD 161 (206)
T ss_dssp CCEEEEESSC
T ss_pred CcEEEEECCC
Confidence 7899999875
No 354
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=52.78 E-value=20 Score=37.16 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=54.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchh---hhhcC-CCcEEEECHHHHHHHHHhccccccCc
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQV 321 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~ 321 (703)
..++||.|+++.-+..+++.+++. ++.+..++++....+.. ..+.. ..+|+|+|. .+ ...+++..+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCcccC
Confidence 358999999999999998888775 46677888877644332 23333 478999993 22 346778889
Q ss_pred ccEEEecccc
Q 005313 322 SYLVLDEADR 331 (703)
Q Consensus 322 ~~IViDEaH~ 331 (703)
++||.-....
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9888765543
No 355
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=52.32 E-value=17 Score=39.87 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=48.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccc-C-CCCC
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAARG-L-DIKD 486 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~G-I-DIp~ 486 (703)
+.++||+|+++..+.++++.+.+ .+.+..++|+.+...+...+. ...+|+|+|. .+..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999999888877764 577899999986554432221 1367999994 22222 3 4556
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+.+||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 356
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=52.20 E-value=14 Score=35.57 Aligned_cols=31 Identities=23% Similarity=0.093 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCChHHHH
Q 005313 197 PTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 197 p~piQ~~ai~~il~grdvlv~ApTGsGKTla 227 (703)
-+.-|..++..+..+.-+.+++|.|+|||..
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3445777888888888899999999999964
No 357
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=52.13 E-value=14 Score=39.69 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=45.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccE
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYL 324 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~I 324 (703)
.++||+||+++-++.+++.+++. ++.+..+++.. ....+..+.. ..+|||||. .+. ..+++. +..|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT~-----v~e-~GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITTD-----ISE-MGANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEECG-----GGG-TSCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEECc-----hHH-cCcccC-CcEE
Confidence 47999999999999999988876 57788888763 2233333433 489999993 333 345555 4444
No 358
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=51.66 E-value=26 Score=35.23 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHH-HHHHHcCC-----CEEEEecCCChHHHHHH
Q 005313 183 PELLREVHNAGFSSPTPIQAQS-WPIALQSR-----DIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 183 ~~l~~~l~~~g~~~p~piQ~~a-i~~il~gr-----dvlv~ApTGsGKTla~l 229 (703)
..+.+-|+..|+. +++-.. +..+++++ .+++.+|+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4677788777764 555333 45555543 47888999999997554
No 359
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=50.88 E-value=10 Score=40.08 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..+++|.|+.| -++||||||.+.
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 46778889987544 489999999764
No 360
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=50.45 E-value=11 Score=41.88 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=24.3
Q ss_pred HHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCChHHHH
Q 005313 188 EVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 188 ~l~~~g~~~p~piQ~~ai~~-il~grdvlv~ApTGsGKTla 227 (703)
.+.+.|. +.+.+.+-+.. +..+..+++++|||||||..
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3444442 33444444443 45677899999999999963
No 361
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=50.34 E-value=55 Score=36.33 Aligned_cols=17 Identities=18% Similarity=0.136 Sum_probs=13.6
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
+-++|+++.|.|||..+
T Consensus 148 ~~v~I~G~~GiGKTtLa 164 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLA 164 (591)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 35677899999999754
No 362
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=50.01 E-value=23 Score=34.65 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=14.9
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
.+.+++.+|+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 357899999999999654
No 363
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=49.91 E-value=30 Score=40.42 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=45.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccc-C-CCCC
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAARG-L-DIKD 486 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~G-I-DIp~ 486 (703)
+.++||.|+++..+.++.+.+.+ .+.+..+||+.+...+...+. ...+|||+|. .+..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999999888777764 578999999987655433222 2578999994 22222 3 4556
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+.+||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 364
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=48.85 E-value=7.7 Score=43.71 Aligned_cols=42 Identities=31% Similarity=0.433 Sum_probs=30.8
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
+.+-+++|+||.-.-+|...+..+.+++..+...+ ++++.+.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 45678999999998888877777888777765544 4554444
No 365
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=48.72 E-value=48 Score=36.01 Aligned_cols=74 Identities=16% Similarity=0.073 Sum_probs=48.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCch---hhhhc-CCCcEEEECHHHHHHHHHhccccccCccc
Q 005313 248 TVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDID-RGVDIVVATPGRLNDILEMRRISLNQVSY 323 (703)
Q Consensus 248 ~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~---~~~l~-~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~ 323 (703)
..+|++...+-+..+.+.+.+.. ..+..++|+....+. +..+. ...+|+|||+..+.. .+++..+++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 44455555666666666665543 477788887764432 22233 347899999777643 778889999
Q ss_pred EEEeccc
Q 005313 324 LVLDEAD 330 (703)
Q Consensus 324 IViDEaH 330 (703)
||+..+.
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9988777
No 366
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=48.15 E-value=36 Score=34.26 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=48.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-----cc-ccCCCCCc
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-----AA-RGLDIKDI 487 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv-----~~-~GIDIp~v 487 (703)
+.++||.|+++..+.++++.+.+ ...+..++++....+.... +. ..+|+|+|.- +. .-+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 56899999999999999888874 3567888998886654332 32 3789999941 12 23455667
Q ss_pred cEEEE
Q 005313 488 RVVVN 492 (703)
Q Consensus 488 ~~VI~ 492 (703)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77665
No 367
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=47.66 E-value=36 Score=35.50 Aligned_cols=19 Identities=47% Similarity=0.543 Sum_probs=15.7
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
...+++.+|+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997543
No 368
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=47.47 E-value=22 Score=38.38 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=46.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEE
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLV 325 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IV 325 (703)
.++||.|+++.-++++++.+++. ++.+..+++... ...+..+.. ..+|||||. .+. ..+++.. ++||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~-~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE-MGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGG-SSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHH-hCcCCCC-CEEE
Confidence 47999999999999988888764 567777777654 233344444 489999993 333 3566766 5555
No 369
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=47.44 E-value=9.9 Score=30.03 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=28.8
Q ss_pred CCCCCCccccccCCccceEeecCCCCcccccCCC
Q 005313 21 PTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54 (703)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (703)
-.||..|..+. -++|+--|.+.+|-|..|.||-
T Consensus 27 ~~LPeGW~~v~-H~SGmP~YlH~~trV~T~SrPY 59 (79)
T 3le4_A 27 EPLPDGWIMTF-HNSGVPVYLHRESRVVTWSRPY 59 (79)
T ss_dssp CCCCTTEEEEE-CTTSSEEEEETTTTEEESSCCC
T ss_pred CcCCCccEEEE-ecCCceEEEeccceEEeccCCe
Confidence 36999998765 5889999999999999999994
No 370
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=47.36 E-value=9.6 Score=39.86 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.4
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
+-++|++|||+|||...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 457888999999997543
No 371
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=46.91 E-value=12 Score=35.32 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=33.3
Q ss_pred CCCeEEEEcCCHHHHHH-HHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 005313 418 PGSKIIVFCSTKKMCDQ-LARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 476 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~-la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd 476 (703)
...++||+|+++..+++ +.+.+.+ .+.+..++++.....+...+. ....|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 35689999999998877 5554442 467788888754332211111 1467889884
No 372
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=46.48 E-value=13 Score=39.10 Aligned_cols=20 Identities=45% Similarity=0.481 Sum_probs=17.3
Q ss_pred HHHcCCCEEEEecCCChHHH
Q 005313 207 IALQSRDIVAIAKTGSGKTL 226 (703)
Q Consensus 207 ~il~grdvlv~ApTGsGKTl 226 (703)
.+..+..++++++||+|||.
T Consensus 171 ~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHH
T ss_pred HHhcCCEEEEECCCCCCHHH
Confidence 45577899999999999996
No 373
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=46.38 E-value=15 Score=40.13 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=17.7
Q ss_pred HHcCCCEEEEecCCChHHHHHH
Q 005313 208 ALQSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 208 il~grdvlv~ApTGsGKTla~l 229 (703)
+.+++.+++.++.|+|||....
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHH
Confidence 3467889999999999996543
No 374
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=45.42 E-value=12 Score=35.36 Aligned_cols=20 Identities=25% Similarity=0.076 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCChHHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~l 229 (703)
.++.+++++++|+|||..+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 45678999999999997543
No 375
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=45.22 E-value=9.8 Score=38.94 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCChHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~ 228 (703)
....+++.+++|+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4568999999999999654
No 376
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=45.13 E-value=14 Score=38.95 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
.++..+++|.++.| -++||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 45677788987644 489999999763
No 377
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=45.09 E-value=11 Score=34.92 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=14.9
Q ss_pred cCCCEEEEecCCChHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla 227 (703)
.++-+++++|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688899999999964
No 378
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=44.67 E-value=35 Score=36.92 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=45.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEE
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLV 325 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IV 325 (703)
.++||.|+++.-++.+.+.+++. ++.+..+++. .....+..+.. ..+|||||. .+. ..+++.. ++||
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~-~R~~~~~~f~~g~~~iLVaT~-----v~~-~GiDip~-~~VI 258 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE-MGANFGA-SRVI 258 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTT-CCCCCGGGSSSCCCSEEEESS-----CC----CCCSC-SEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHH-HHHHHHhhccCCCceEEEECC-----hHH-hCeecCC-CEEE
Confidence 47999999999999999988875 5677778775 33444455544 478999992 222 2556666 5444
No 379
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=44.51 E-value=24 Score=34.18 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC----CCEEEEecCCChHHHHH
Q 005313 183 PELLREVHNAGFSSPTPIQAQSWPIALQS----RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 183 ~~l~~~l~~~g~~~p~piQ~~ai~~il~g----rdvlv~ApTGsGKTla~ 228 (703)
..|.+-|.-.++ .+... ...+..++.+ +.+++.+|+|+|||..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 466666665543 33333 4445555554 25788899999999654
No 380
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=44.28 E-value=16 Score=37.95 Aligned_cols=26 Identities=27% Similarity=0.166 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCE--EEEecCCChHHHHH
Q 005313 203 QSWPIALQSRDI--VAIAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdv--lv~ApTGsGKTla~ 228 (703)
..+..+++|.+. ++-++||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 456677888875 44589999999764
No 381
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=43.73 E-value=15 Score=38.63 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCEE--EEecCCChHHHHH
Q 005313 203 QSWPIALQSRDIV--AIAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvl--v~ApTGsGKTla~ 228 (703)
..+..+++|.|.. +-++||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4567788898754 4489999999764
No 382
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.53 E-value=17 Score=39.01 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..++.|.|+.| -++||||||.+.
T Consensus 131 ~lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 131 QLVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhCCcceEEEEECCCCCCCceEe
Confidence 36788889987644 489999999875
No 383
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=43.36 E-value=16 Score=39.15 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCE--EEEecCCChHHHHH
Q 005313 203 QSWPIALQSRDI--VAIAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdv--lv~ApTGsGKTla~ 228 (703)
..+..++.|.+. ++-++||||||.+.
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 456677888775 44489999999764
No 384
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=43.33 E-value=15 Score=38.46 Aligned_cols=26 Identities=31% Similarity=0.230 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCEE--EEecCCChHHHHH
Q 005313 203 QSWPIALQSRDIV--AIAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvl--v~ApTGsGKTla~ 228 (703)
..+..+++|.+.. +-++||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4567778888754 4489999999764
No 385
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=43.23 E-value=13 Score=34.23 Aligned_cols=19 Identities=32% Similarity=0.211 Sum_probs=15.7
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
.+.+++++++|+|||.+.-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578899999999997654
No 386
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=43.15 E-value=51 Score=40.94 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=30.4
Q ss_pred ccCcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEe
Q 005313 318 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 358 (703)
Q Consensus 318 l~~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lS 358 (703)
+.+-+++|+||+=.-+|..-+..+.+.+..+.+.+-+|+.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 55778999999999999887777887777665555444443
No 387
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=43.03 E-value=15 Score=38.79 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..+++|.+..| .++||||||.+.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 45667788887544 489999999754
No 388
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=42.89 E-value=14 Score=38.84 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCCEE--EEecCCChHHHHH
Q 005313 202 AQSWPIALQSRDIV--AIAKTGSGKTLGY 228 (703)
Q Consensus 202 ~~ai~~il~grdvl--v~ApTGsGKTla~ 228 (703)
+..+..++.|.+.. +-++||||||.+.
T Consensus 78 ~plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 78 CPILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 34567778888754 4489999999753
No 389
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=42.89 E-value=16 Score=38.35 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCE--EEEecCCChHHHHH
Q 005313 203 QSWPIALQSRDI--VAIAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdv--lv~ApTGsGKTla~ 228 (703)
..+..+++|.++ ++-++||||||.+.
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 456677888875 44489999999764
No 390
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=42.64 E-value=18 Score=38.35 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..++.|.+..| -++||||||.+.
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 45667788887544 489999999764
No 391
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=42.53 E-value=78 Score=32.81 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.1
Q ss_pred CEEEEecCCChHHHHH
Q 005313 213 DIVAIAKTGSGKTLGY 228 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ 228 (703)
.+++++.+|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999754
No 392
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=42.48 E-value=11 Score=34.66 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=14.5
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
++-+++++++|+|||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345788999999999754
No 393
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=42.18 E-value=13 Score=38.64 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.0
Q ss_pred HHHcCCCEEEEecCCChHHH
Q 005313 207 IALQSRDIVAIAKTGSGKTL 226 (703)
Q Consensus 207 ~il~grdvlv~ApTGsGKTl 226 (703)
.+..+..++++++||+|||.
T Consensus 167 ~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHH
T ss_pred hccCCCEEEEECCCCCCHHH
Confidence 34567899999999999996
No 394
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=42.16 E-value=18 Score=37.94 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..+++|.|..| -++||||||.+.
T Consensus 74 plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 74 PLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHhhcCeeEEEecccCCCceEee
Confidence 45667788887544 489999999764
No 395
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=41.77 E-value=18 Score=37.92 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..+++|.+..| -++||||||.+.
T Consensus 80 plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 80 PLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 45567788877544 489999999764
No 396
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=41.75 E-value=12 Score=38.76 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=13.4
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
+-++|++|||+|||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34677899999999654
No 397
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=41.69 E-value=18 Score=38.16 Aligned_cols=26 Identities=23% Similarity=0.092 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..++.|.+..| -++||||||.+.
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 45667788887544 489999999763
No 398
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=41.53 E-value=18 Score=37.57 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..+++|.|..| -++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 46777889987544 489999999764
No 399
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=41.51 E-value=15 Score=38.88 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 202 AQSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 202 ~~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
+..+..+++|.+..| -++||||||.+.
T Consensus 90 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 90 SPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 345667788887544 489999999753
No 400
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=41.08 E-value=14 Score=38.23 Aligned_cols=16 Identities=38% Similarity=0.308 Sum_probs=12.9
Q ss_pred CEEEEecCCChHHHHH
Q 005313 213 DIVAIAKTGSGKTLGY 228 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ 228 (703)
-++|++|||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3677899999999654
No 401
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=41.05 E-value=16 Score=38.44 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCEE--EEecCCChHHHHH
Q 005313 203 QSWPIALQSRDIV--AIAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvl--v~ApTGsGKTla~ 228 (703)
..+..++.|.+.. +.++||||||.+.
T Consensus 71 plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 71 PTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 4456677887754 4489999999754
No 402
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=40.84 E-value=13 Score=35.92 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=14.3
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
++-+++.++||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456788999999999543
No 403
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=40.82 E-value=12 Score=33.77 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=13.1
Q ss_pred CEEEEecCCChHHHHH
Q 005313 213 DIVAIAKTGSGKTLGY 228 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ 228 (703)
-+++++++|||||..+
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999754
No 404
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=40.39 E-value=16 Score=34.88 Aligned_cols=18 Identities=28% Similarity=0.148 Sum_probs=14.4
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
++-+++++|+|+|||...
T Consensus 8 g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 455788899999999743
No 405
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=40.36 E-value=38 Score=38.33 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=45.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcC-CCcEEEECHHHHHHHHHhccccccCcccEE
Q 005313 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLV 325 (703)
Q Consensus 247 ~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IV 325 (703)
.++||.|+++.-++.+++.+++. ++.+..+++.. ....+..+.. ..+|||||. .+. ..+++. +++||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~-R~~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKT-FDTEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTT-HHHHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHH-HHHHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceEEE
Confidence 47999999999999999988875 46777788742 2223334433 488999993 333 355664 66653
No 406
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=40.16 E-value=19 Score=37.93 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..+++|.+..| -++||||||.+.
T Consensus 96 plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 96 PILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 45667788887544 489999999764
No 407
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=39.83 E-value=15 Score=36.40 Aligned_cols=15 Identities=33% Similarity=0.076 Sum_probs=12.6
Q ss_pred EEEEecCCChHHHHH
Q 005313 214 IVAIAKTGSGKTLGY 228 (703)
Q Consensus 214 vlv~ApTGsGKTla~ 228 (703)
++++++||||||..+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678899999999654
No 408
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=39.62 E-value=15 Score=38.51 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..+++|.|+.| -++||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36777888987544 489999999765
No 409
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=39.61 E-value=17 Score=34.39 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=14.2
Q ss_pred cCCCEEEEecCCChHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla 227 (703)
.++-+++++|+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 457789999999999964
No 410
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=39.55 E-value=28 Score=29.29 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCC
Q 005313 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKS 453 (703)
Q Consensus 409 L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~ 453 (703)
|...+....+..+++|||.+-..+...+..|.+ ++.+..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 344445556678999999998888888888874 567888888753
No 411
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=39.22 E-value=9.6 Score=37.47 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=29.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCCEEEEecCCChHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIAL--QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il--~grdvlv~ApTGsGKTla 227 (703)
|-.+|+++.-.+.+...+...-.. + -...++..+- -.+.+++.+|+|+|||..
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 456788876666666666532110 0 0112222211 124589999999999964
No 412
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=38.94 E-value=18 Score=39.16 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 202 AQSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 202 ~~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
...+..++.|.|..| -++||||||.+.
T Consensus 126 ~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 126 EEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 345667788887544 489999999764
No 413
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=38.63 E-value=20 Score=38.22 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCEE--EEecCCChHHHHH
Q 005313 203 QSWPIALQSRDIV--AIAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvl--v~ApTGsGKTla~ 228 (703)
..+..+++|.+.. +-++||||||.+.
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4567778887754 4489999999764
No 414
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=38.58 E-value=17 Score=38.51 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=19.5
Q ss_pred HHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 204 SWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 204 ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
.+..++.|.+..| .++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 6777889987544 489999999764
No 415
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=38.53 E-value=64 Score=37.79 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=41.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 476 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd 476 (703)
.+..++|.|+|+..|.+.++.+.. .+.+.++.|+++.++|.... .+.|+|+|.
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 456899999999999888877753 56788999999877655433 368999995
No 416
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=38.51 E-value=16 Score=38.39 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..+++|.|..| -++||||||.+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 36677788887544 489999999764
No 417
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=38.03 E-value=51 Score=37.40 Aligned_cols=70 Identities=10% Similarity=0.240 Sum_probs=47.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccc-C-CCCCc
Q 005313 420 SKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAARG-L-DIKDI 487 (703)
Q Consensus 420 ~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~G-I-DIp~v 487 (703)
.++||.++++..+.+..+.+.+ .+.+..++|+.....+...+. ...+|+|+|. .+..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 6899999999988888877764 567888999876433222221 2478999994 22333 3 56677
Q ss_pred cEEEEe
Q 005313 488 RVVVNY 493 (703)
Q Consensus 488 ~~VI~~ 493 (703)
++||.-
T Consensus 138 ~~vViD 143 (696)
T 2ykg_A 138 TLMIFD 143 (696)
T ss_dssp SEEEEE
T ss_pred cEEEEe
Confidence 887763
No 418
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.88 E-value=22 Score=38.18 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..++.|.++.| .++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 46788889987644 489999999764
No 419
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=37.81 E-value=21 Score=32.81 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCChHHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~l 229 (703)
..+.+++++++|+|||...-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45679999999999997543
No 420
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=37.55 E-value=12 Score=36.92 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=14.9
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
.+.+++.+|+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356899999999999754
No 421
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=37.48 E-value=6.8 Score=39.54 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=26.0
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHHH--cCCCEEEEecCCChHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQ-AQSWPIAL--QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ-~~ai~~il--~grdvlv~ApTGsGKTla 227 (703)
|-.+|++.+-.+++.+.|...= ..|+. .+++..+- -.+.+++.+|.|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 3467888876677777665421 12221 12222211 124589999999999964
No 422
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=37.31 E-value=17 Score=33.98 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=15.7
Q ss_pred HcCCCEEEEecCCChHHHHH
Q 005313 209 LQSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 209 l~grdvlv~ApTGsGKTla~ 228 (703)
..+.-+++++++|+|||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667888999999999643
No 423
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=37.15 E-value=15 Score=33.85 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=14.7
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
+.-+++.+++|+|||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456788999999999754
No 424
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=36.83 E-value=2.1e+02 Score=29.27 Aligned_cols=11 Identities=18% Similarity=-0.064 Sum_probs=9.1
Q ss_pred cEEEecccccc
Q 005313 323 YLVLDEADRML 333 (703)
Q Consensus 323 ~IViDEaH~ml 333 (703)
+||+||+|...
T Consensus 169 ~li~De~~~~~ 179 (386)
T 1cs1_A 169 VSVVDNTFLSP 179 (386)
T ss_dssp EEEEECTTTCT
T ss_pred EEEEECCCccc
Confidence 68999999754
No 425
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.79 E-value=35 Score=46.01 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---HHHHcCCCEEEEecCCChHHHHHHH
Q 005313 181 FPPELLREVHNAGFSSPTPIQ-AQSW---PIALQSRDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 181 l~~~l~~~l~~~g~~~p~piQ-~~ai---~~il~grdvlv~ApTGsGKTla~ll 230 (703)
|...+.+.+.+.++. +.+.| .+++ ..+.....+++++|||+|||.++-+
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 335566666777774 44444 3343 3344566789999999999987653
No 426
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=36.69 E-value=45 Score=39.76 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=44.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccc-C-CCCC
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAARG-L-DIKD 486 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~G-I-DIp~ 486 (703)
+.++||.|+++..+.++...|.+ .+.+..+||+.+...+...+. ...+|+|+|. .+..+ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 67899999999999888877764 578999999986554332221 1367999994 22222 2 4556
Q ss_pred ccEEEE
Q 005313 487 IRVVVN 492 (703)
Q Consensus 487 v~~VI~ 492 (703)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777765
No 427
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=36.30 E-value=20 Score=33.25 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.1
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
+..+++++++|+|||.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 10 GINILITGTPGTGKTSMA 27 (184)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457899999999999754
No 428
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=36.23 E-value=31 Score=37.35 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.3
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
+.+|+.+|+|+|||+.+.
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999997543
No 429
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=35.93 E-value=18 Score=37.46 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=13.8
Q ss_pred CEEEEecCCChHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 213 dvlv~ApTGsGKTla~l 229 (703)
.++|++|||+|||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57888999999997543
No 430
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=35.92 E-value=32 Score=37.45 Aligned_cols=19 Identities=32% Similarity=0.268 Sum_probs=15.8
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
..++|+++|+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997544
No 431
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=35.88 E-value=11 Score=37.77 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=29.8
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHHH--cCCCEEEEecCCChHHHH
Q 005313 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQ-AQSWPIAL--QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 172 p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ-~~ai~~il--~grdvlv~ApTGsGKTla 227 (703)
+-.+|+++.-.+++.+.+...-. .+. ...+..+- -.+.+++++|+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~----~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE----FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH----HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH----HHHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 44678887666777666654311 011 11222111 124589999999999964
No 432
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=35.75 E-value=17 Score=38.71 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=18.3
Q ss_pred HHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 204 SWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 204 ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
.+..++.|.+..| -++||||||.+.
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3456778877544 489999999764
No 433
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=35.68 E-value=37 Score=37.53 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.5
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
+.+++|.+.||||||.+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999654
No 434
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=35.56 E-value=23 Score=32.11 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=14.8
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
+..++++++.|+|||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457889999999999743
No 435
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=35.44 E-value=18 Score=38.35 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCEEE--EecCCChHHHHH
Q 005313 203 QSWPIALQSRDIVA--IAKTGSGKTLGY 228 (703)
Q Consensus 203 ~ai~~il~grdvlv--~ApTGsGKTla~ 228 (703)
..+..+++|.++.| -++||||||.+.
T Consensus 106 ~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 106 MLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 36677788887544 489999999764
No 436
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=35.42 E-value=19 Score=34.50 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=13.6
Q ss_pred EEEEecCCChHHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 214 vlv~ApTGsGKTla~ll 230 (703)
.++.++.|||||+.++.
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 57889999999986543
No 437
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=35.31 E-value=20 Score=34.31 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.0
Q ss_pred cCCCEEEEecCCChHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla 227 (703)
.++-+++++|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 456788899999999964
No 438
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=35.22 E-value=19 Score=33.36 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=14.8
Q ss_pred cCCCEEEEecCCChHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla 227 (703)
.+.-+++++++|+|||..
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456688899999999964
No 439
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=35.08 E-value=25 Score=34.89 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=18.0
Q ss_pred HHcCCCEEEEecCCChHHHHHH
Q 005313 208 ALQSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 208 il~grdvlv~ApTGsGKTla~l 229 (703)
.+.++.+++++++|+|||.+.-
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHH
Confidence 3458899999999999997543
No 440
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=34.43 E-value=35 Score=35.11 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.1
Q ss_pred EEEEecCCChHHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 214 vlv~ApTGsGKTla~ll 230 (703)
++++++.|+|||.....
T Consensus 108 I~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56779999999976543
No 441
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=34.17 E-value=23 Score=33.13 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.7
Q ss_pred cCCCEEEEecCCChHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla 227 (703)
.+.-+.+++|+|+|||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456678889999999974
No 442
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=34.15 E-value=24 Score=32.96 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=32.4
Q ss_pred CcccEEEecccccccCCChHHHHHHHHHcCCCceEEEEecc
Q 005313 320 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 360 (703)
Q Consensus 320 ~~~~IViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT 360 (703)
...++|+||...-+|......+..++..+....|+|++|-.
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~ 126 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLR 126 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 34789999999998877777788888777777788777644
No 443
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=34.15 E-value=18 Score=33.00 Aligned_cols=16 Identities=38% Similarity=0.356 Sum_probs=13.1
Q ss_pred CEEEEecCCChHHHHH
Q 005313 213 DIVAIAKTGSGKTLGY 228 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ 228 (703)
-+++++++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3678899999999754
No 444
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=34.00 E-value=48 Score=44.15 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---HHHHcCCCEEEEecCCChHHHHHHH
Q 005313 181 FPPELLREVHNAGFSSPTPIQ-AQSW---PIALQSRDIVAIAKTGSGKTLGYLL 230 (703)
Q Consensus 181 l~~~l~~~l~~~g~~~p~piQ-~~ai---~~il~grdvlv~ApTGsGKTla~ll 230 (703)
+...+.+.+.+.++. +.+.+ .+++ ..+...+.+++++|||+|||.++-+
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 345566666666764 45544 3333 4445667899999999999987654
No 445
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=33.99 E-value=96 Score=36.32 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=49.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc--c----cc-------
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD--V----AA------- 479 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd--v----~~------- 479 (703)
.+..++|.|+|++.|.+.++.+.. ++.+.++.|+++.++|.... .+.|+|+|. + +.
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 456899999999999888877753 56788999999887665542 268999995 1 11
Q ss_pred ccCCCCCccEEEE
Q 005313 480 RGLDIKDIRVVVN 492 (703)
Q Consensus 480 ~GIDIp~v~~VI~ 492 (703)
..+++..++++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 2355667776653
No 446
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=33.91 E-value=25 Score=33.14 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCChHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~ 228 (703)
.++-+++++++|+|||...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCEEEECCTTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4567899999999999643
No 447
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=33.82 E-value=40 Score=33.77 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=14.4
Q ss_pred CEEEEecCCChHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 213 dvlv~ApTGsGKTla~l 229 (703)
.+++.+|+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 68999999999997543
No 448
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=33.80 E-value=25 Score=33.74 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.4
Q ss_pred HcCCCEEEEecCCChHHHH
Q 005313 209 LQSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 209 l~grdvlv~ApTGsGKTla 227 (703)
..++-+.+++|+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567789999999999963
No 449
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=33.70 E-value=22 Score=31.97 Aligned_cols=17 Identities=12% Similarity=-0.218 Sum_probs=13.6
Q ss_pred CEEEEecCCChHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 213 dvlv~ApTGsGKTla~l 229 (703)
.+++.++.|+|||.+.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999997543
No 450
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=33.12 E-value=27 Score=36.76 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=16.6
Q ss_pred HHHHH-cCCCE--EEEecCCChHHHHH
Q 005313 205 WPIAL-QSRDI--VAIAKTGSGKTLGY 228 (703)
Q Consensus 205 i~~il-~grdv--lv~ApTGsGKTla~ 228 (703)
+..++ .+.+. ++-++||||||.+.
T Consensus 76 v~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 76 IIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred hhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 33444 47764 56699999999764
No 451
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=32.71 E-value=26 Score=37.52 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=13.1
Q ss_pred EEEEecCCChHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYL 229 (703)
Q Consensus 214 vlv~ApTGsGKTla~l 229 (703)
++|++|||+|||..+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6778999999997544
No 452
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=32.40 E-value=23 Score=37.01 Aligned_cols=17 Identities=41% Similarity=0.331 Sum_probs=13.6
Q ss_pred CEEEEecCCChHHHHHH
Q 005313 213 DIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 213 dvlv~ApTGsGKTla~l 229 (703)
-++|++|||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 46788999999997543
No 453
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=32.25 E-value=27 Score=33.31 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=22.0
Q ss_pred cccEEEecccccccCC--ChHHHHHHHHHc----CCCceEEEEecc
Q 005313 321 VSYLVLDEADRMLDMG--FEPQIRKIVKEV----PARRQTLMYTAT 360 (703)
Q Consensus 321 ~~~IViDEaH~ml~~g--f~~~i~~il~~l----~~~~q~L~lSAT 360 (703)
-.+|||||||.++... .... ..++..+ ....++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~-~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKI-PENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCC-CHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchh-HHHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999884321 1111 1233333 234577777766
No 454
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=32.14 E-value=12 Score=42.75 Aligned_cols=75 Identities=11% Similarity=0.225 Sum_probs=47.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHh--cCCCCceEEEeeCC--------CCCCch---hhhhcC-CCcEEEECHHHHHHHH
Q 005313 246 GPTVLVLSPTRELATQIQDEAVKF--GKSSRISCTCLYGG--------APKGPQ---LKDIDR-GVDIVVATPGRLNDIL 311 (703)
Q Consensus 246 g~~vLIl~PtreLa~Q~~~~~~k~--~~~~~i~v~~~~gg--------~~~~~~---~~~l~~-g~dIlV~Tp~~L~~~l 311 (703)
+.++||.|+++..++.+.+.+.+. ....++.+..++|+ ....++ +..+.. ..+|||+|. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 358999999999999999888764 22336788888887 433322 233333 378999993 22
Q ss_pred HhccccccCcccEEE
Q 005313 312 EMRRISLNQVSYLVL 326 (703)
Q Consensus 312 ~~~~~~l~~~~~IVi 326 (703)
...+++..+++||.
T Consensus 475 -~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 475 -EEGLDIKECNIVIR 488 (699)
T ss_dssp -CTTSCCCSCCCCEE
T ss_pred -ccCCccccCCEEEE
Confidence 34677888888874
No 455
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=32.13 E-value=41 Score=40.92 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=47.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhcCC-ceeEecCCCCHHHHHHHHHHHhcCCCcEEEEc-----ccccccC-CCCCccE
Q 005313 417 EPGSKIIVFCSTKKMCDQLARNLTRQF-GAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT-----DVAARGL-DIKDIRV 489 (703)
Q Consensus 417 ~~~~kvLVF~~s~~~a~~la~~L~~~~-~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaT-----dv~~~GI-DIp~v~~ 489 (703)
..+.++||.++++..+.+.++.|.+.+ .+..++|+.+ .++..+|||+| +.+.++- .+.++.+
T Consensus 225 ~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 225 KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCE
Confidence 456799999999999999999888643 5777898876 24568899999 3444433 2556777
Q ss_pred EEE
Q 005313 490 VVN 492 (703)
Q Consensus 490 VI~ 492 (703)
||.
T Consensus 294 VVI 296 (1108)
T 3l9o_A 294 VIF 296 (1108)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 456
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=32.10 E-value=42 Score=30.87 Aligned_cols=19 Identities=26% Similarity=0.074 Sum_probs=14.7
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
+..+++++.+|+|||..+-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 3457788999999997543
No 457
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=31.94 E-value=28 Score=32.35 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.2
Q ss_pred CCEEEEecCCChHHHH
Q 005313 212 RDIVAIAKTGSGKTLG 227 (703)
Q Consensus 212 rdvlv~ApTGsGKTla 227 (703)
+-+++++|+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4477889999999964
No 458
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=31.69 E-value=45 Score=28.72 Aligned_cols=45 Identities=9% Similarity=0.173 Sum_probs=30.0
Q ss_pred HHHHHHhcCCC-CeEEEEc-CCHHHHHHHHHHHh-cCCceeEecCCCC
Q 005313 409 LEQILRSQEPG-SKIIVFC-STKKMCDQLARNLT-RQFGAAAIHGDKS 453 (703)
Q Consensus 409 L~~ll~~~~~~-~kvLVF~-~s~~~a~~la~~L~-~~~~~~~lhg~~~ 453 (703)
+...+....+. .++|||| .+-..+..++..|. .++.+..|.|++.
T Consensus 78 ~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 78 IYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 33333334445 7999999 46666667777776 3567888888764
No 459
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=31.13 E-value=28 Score=32.99 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=15.6
Q ss_pred HHHcCCCEEEEecCCChHHHH
Q 005313 207 IALQSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 207 ~il~grdvlv~ApTGsGKTla 227 (703)
.+..++-+.+++|.|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456677788999999999963
No 460
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=31.07 E-value=21 Score=37.62 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=14.9
Q ss_pred cCCCEEEEecCCChHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla 227 (703)
.+..+++++|||+|||..
T Consensus 135 ~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSEEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456788899999999964
No 461
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=31.01 E-value=23 Score=33.47 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=13.1
Q ss_pred CCEEEEecCCChHHH
Q 005313 212 RDIVAIAKTGSGKTL 226 (703)
Q Consensus 212 rdvlv~ApTGsGKTl 226 (703)
|-+|+++|.|+|||.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 458899999999996
No 462
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=30.99 E-value=63 Score=33.09 Aligned_cols=55 Identities=5% Similarity=0.011 Sum_probs=33.4
Q ss_pred HHHHHHHHhccccccCcccEEEecccc-cccCCChHHHHHHHHHcCCCceEEEEeccC
Q 005313 305 GRLNDILEMRRISLNQVSYLVLDEADR-MLDMGFEPQIRKIVKEVPARRQTLMYTATW 361 (703)
Q Consensus 305 ~~L~~~l~~~~~~l~~~~~IViDEaH~-ml~~gf~~~i~~il~~l~~~~q~L~lSAT~ 361 (703)
..+.+.+....+ +...++|||||+|. |. ......+.+.++..++...+|+.+.++
T Consensus 62 ~~l~~~~~~~pl-f~~~kvvii~~~~~kl~-~~~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 62 NAIFSLCQAMSL-FASRQTLLLLLPENGPN-AAINEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp HHHHHHHHHHHH-CCSCEEEEEECCSSCCC-TTHHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred HHHHHHhcCcCC-ccCCeEEEEECCCCCCC-hHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 445554443332 45678999999997 53 334455666666666666555555444
No 463
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=30.81 E-value=30 Score=35.36 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=15.2
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
...+++.+|+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999654
No 464
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=30.71 E-value=1.3e+02 Score=35.51 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 476 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd 476 (703)
.+..++|.|+|...|.+.++.+.. .+.+.++.|+++.++|.... .+.|+|+|.
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 456899999999999888877754 46788999999987766654 378999994
No 465
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=30.48 E-value=37 Score=31.90 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=22.6
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~PtreLa~Q~~~~~~k 268 (703)
++|.+++|||||.-+. .+... +.++++|+.....-.++.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~-----~la~~------~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-----ALIGD------APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHH-----HHHCS------CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHH-----HHHhc------CCCeEEEecCCCCCHHHHHHHHH
Confidence 6788999999995332 12111 23578888754333333333333
No 466
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=30.46 E-value=47 Score=34.05 Aligned_cols=32 Identities=28% Similarity=0.257 Sum_probs=20.6
Q ss_pred EEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 215 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 215 lv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
++.+..|.|||.++.-.++..... +.++|+|-
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~-------G~rVLlvD 49 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARS-------GKKTLVIS 49 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHHHC-------CCcEEEEe
Confidence 445899999998776555444332 34666665
No 467
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=30.42 E-value=29 Score=32.63 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=15.2
Q ss_pred cCCCEEEEecCCChHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~ 228 (703)
.+.-++++++.|+|||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567888999999999743
No 468
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=30.13 E-value=53 Score=31.08 Aligned_cols=30 Identities=20% Similarity=0.050 Sum_probs=19.1
Q ss_pred ecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEcC
Q 005313 218 AKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 254 (703)
Q Consensus 218 ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~P 254 (703)
..+|.|||.+.+-.+...... +.+++++=|
T Consensus 9 ~kgGvGKTt~a~nLa~~la~~-------G~rVll~dp 38 (224)
T 1byi_A 9 TDTEVGKTVASCALLQAAKAA-------GYRTAGYKP 38 (224)
T ss_dssp SSTTSCHHHHHHHHHHHHHHT-------TCCEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHHC-------CCCEEEEcc
Confidence 568999998766544433332 447887654
No 469
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=29.54 E-value=1e+02 Score=33.29 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.4
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 368999999999999754
No 470
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=29.42 E-value=24 Score=32.52 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=13.8
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
.-+++++++|+|||..+
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788899999999754
No 471
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=29.30 E-value=2.6e+02 Score=23.65 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=39.9
Q ss_pred EEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEE
Q 005313 422 IIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472 (703)
Q Consensus 422 vLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~IL 472 (703)
.+||....+-...+.+.++ ++..+..++++...+.|.+-++.|...-..+-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 4678888888888888887 46788889999998888888999976544443
No 472
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=29.26 E-value=22 Score=32.63 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=15.0
Q ss_pred CCCEEEEecCCChHHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~l 229 (703)
+..+++++++|||||..+-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4467888999999997543
No 473
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=29.01 E-value=55 Score=37.57 Aligned_cols=67 Identities=21% Similarity=0.403 Sum_probs=46.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccccCC-CCCcc
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAARGLD-IKDIR 488 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~GID-Ip~v~ 488 (703)
+.++|+.++++..+..+++.+.+ ++.+..++|+....++. .+..+|+|+|. .+..... +.++.
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~ 140 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCTTGGGEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChhhhhcCC
Confidence 57999999999999999988852 46788899987654431 24678999995 2222222 45666
Q ss_pred EEEE
Q 005313 489 VVVN 492 (703)
Q Consensus 489 ~VI~ 492 (703)
+||.
T Consensus 141 ~vIi 144 (720)
T 2zj8_A 141 ILVA 144 (720)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 474
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=28.97 E-value=39 Score=30.77 Aligned_cols=18 Identities=39% Similarity=0.383 Sum_probs=14.7
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
+.+++++++|||||..+-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368899999999997543
No 475
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=28.97 E-value=35 Score=31.23 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=12.5
Q ss_pred CEEEEecCCChHHHH
Q 005313 213 DIVAIAKTGSGKTLG 227 (703)
Q Consensus 213 dvlv~ApTGsGKTla 227 (703)
-.++++++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 457889999999964
No 476
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=28.65 E-value=36 Score=31.38 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCChHHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~l 229 (703)
....+++++++|||||.+.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678888999999997543
No 477
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=28.54 E-value=75 Score=36.34 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=52.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCC---chhhhhcC---CCcEEEECHHHHHHHHHhccccccCcc
Q 005313 249 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG---PQLKDIDR---GVDIVVATPGRLNDILEMRRISLNQVS 322 (703)
Q Consensus 249 vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~---~~~~~l~~---g~dIlV~Tp~~L~~~l~~~~~~l~~~~ 322 (703)
.+|+|+++.-++++.+.+.+. ++.+..++|+.... .+...+.. ..+|||||. .+. ..+++ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e-~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG-MGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG-SSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH-CCcCc-Ccc
Confidence 366688888888888888774 57788899988765 34445553 379999993 333 46677 899
Q ss_pred cEEEeccccc
Q 005313 323 YLVLDEADRM 332 (703)
Q Consensus 323 ~IViDEaH~m 332 (703)
+||+-.+.+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 8888777654
No 478
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=28.23 E-value=52 Score=33.53 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=13.4
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
.-+.+++++|+|||...
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45677899999999743
No 479
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=28.23 E-value=35 Score=31.53 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=15.3
Q ss_pred cCCCEEEEecCCChHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~ 228 (703)
...-+++++++|||||..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456888999999999754
No 480
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=28.11 E-value=25 Score=39.73 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=13.3
Q ss_pred CEEEEecCCChHHH
Q 005313 213 DIVAIAKTGSGKTL 226 (703)
Q Consensus 213 dvlv~ApTGsGKTl 226 (703)
++|+.+|+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999995
No 481
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=28.06 E-value=3.4e+02 Score=24.56 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=45.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEecC
Q 005313 419 GSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF 495 (703)
Q Consensus 419 ~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~~VI~~d~ 495 (703)
...+-|.|.+...+..+.+.|.+ ++++..+..+.. .-.-.|.|+|--.+.|+.+ ++||.+++
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 45788899999999999999975 466666654431 1234699999999999886 66666665
No 482
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=28.06 E-value=60 Score=27.00 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=31.4
Q ss_pred HHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc-CCc-eeEecCCCC
Q 005313 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFG-AAAIHGDKS 453 (703)
Q Consensus 410 ~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~-~~~-~~~lhg~~~ 453 (703)
...+....+..+++|||.+-..+...+..|.+ ++. +..+.|++.
T Consensus 49 ~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 49 GAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 33444556778999999997777777777764 563 777888753
No 483
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=28.04 E-value=39 Score=30.32 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=12.2
Q ss_pred EEEEecCCChHHHH
Q 005313 214 IVAIAKTGSGKTLG 227 (703)
Q Consensus 214 vlv~ApTGsGKTla 227 (703)
.++++|+|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57889999999975
No 484
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=28.04 E-value=28 Score=31.63 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=14.4
Q ss_pred CCCEEEEecCCChHHHHH
Q 005313 211 SRDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 211 grdvlv~ApTGsGKTla~ 228 (703)
+..++++++.|+|||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345788899999999754
No 485
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=27.97 E-value=32 Score=35.46 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.5
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
..+++.+|+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57899999999999643
No 486
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=27.82 E-value=4e+02 Score=26.56 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHhc
Q 005313 406 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR 441 (703)
Q Consensus 406 ~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~~ 441 (703)
...+..+|.... ....|||.+-..+.-+.+.|++
T Consensus 193 ~~~~~~~L~~~~--~~~aI~~~~d~~a~g~~~al~~ 226 (350)
T 3h75_A 193 YRQAQQLLKRYP--KTQLVWSANDEMALGAMQAARE 226 (350)
T ss_dssp HHHHHHHHHHCT--TEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CcCEEEECChHHHHHHHHHHHH
Confidence 344566666542 4677899988888777777763
No 487
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=27.71 E-value=32 Score=31.03 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.0
Q ss_pred CCEEEEecCCChHHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~l 229 (703)
+++++.+..|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478889999999997654
No 488
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=27.70 E-value=29 Score=32.55 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=15.2
Q ss_pred cCCCEEEEecCCChHHHHHH
Q 005313 210 QSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 210 ~grdvlv~ApTGsGKTla~l 229 (703)
.+.-+++++++|+|||..+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34567788999999997543
No 489
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=27.68 E-value=32 Score=32.21 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=14.3
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
+-++++++.|+|||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999754
No 490
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=27.57 E-value=51 Score=37.66 Aligned_cols=68 Identities=15% Similarity=0.281 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccccCC-CCCc
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAARGLD-IKDI 487 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd-----v~~~GID-Ip~v 487 (703)
.+.++|+.++++..+.+.++.+++ ++.+..++|+....++ ..+..+|+|+|. .+..+.. +.++
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 467999999999999999988842 4578888988764432 124678999995 2333322 4566
Q ss_pred cEEEE
Q 005313 488 RVVVN 492 (703)
Q Consensus 488 ~~VI~ 492 (703)
.+||.
T Consensus 140 ~~vIi 144 (702)
T 2p6r_A 140 SCLVV 144 (702)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66664
No 491
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=27.53 E-value=49 Score=34.03 Aligned_cols=33 Identities=30% Similarity=0.229 Sum_probs=21.1
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
+++.+..|.|||.++...++..... |.++|+|-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~-------G~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKV-------RSSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTS-------SSCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC-------CCeEEEEE
Confidence 3455899999998766544444332 44677763
No 492
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=27.50 E-value=23 Score=32.46 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=13.7
Q ss_pred CCCEEEEecCCChHHHH
Q 005313 211 SRDIVAIAKTGSGKTLG 227 (703)
Q Consensus 211 grdvlv~ApTGsGKTla 227 (703)
+.-++++++.|+|||..
T Consensus 9 gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 44577889999999964
No 493
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=27.49 E-value=33 Score=31.66 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=13.0
Q ss_pred CEEEEecCCChHHHHH
Q 005313 213 DIVAIAKTGSGKTLGY 228 (703)
Q Consensus 213 dvlv~ApTGsGKTla~ 228 (703)
-+++++++|+|||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678899999999743
No 494
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=27.42 E-value=42 Score=31.72 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCChHHHHHH
Q 005313 198 TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 229 (703)
Q Consensus 198 ~piQ~~ai~~il~grdvlv~ApTGsGKTla~l 229 (703)
++.+...+ .+..+.-+++++++|+|||..+-
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 44444442 33455677888999999997543
No 495
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=27.20 E-value=30 Score=31.81 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.0
Q ss_pred CCEEEEecCCChHHHHH
Q 005313 212 RDIVAIAKTGSGKTLGY 228 (703)
Q Consensus 212 rdvlv~ApTGsGKTla~ 228 (703)
.-+++++++|||||..+
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788899999999754
No 496
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=26.98 E-value=1.3e+02 Score=35.40 Aligned_cols=53 Identities=11% Similarity=0.198 Sum_probs=41.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 005313 418 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 476 (703)
Q Consensus 418 ~~~kvLVF~~s~~~a~~la~~L~~-----~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTd 476 (703)
.+..++|.|+|+..|.+.++.+.. ++.+.++.++++.++|.... .+.|+++|.
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 356899999999999888877754 56788999999987766543 268999994
No 497
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=26.97 E-value=66 Score=31.19 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=8.7
Q ss_pred cEEEEEEecCChHHHHHHHHHH
Q 005313 516 GVAYTFFGDQDSRYASDLIKLL 537 (703)
Q Consensus 516 g~~i~~~~~~d~~~~~~l~~~l 537 (703)
|.+++-| .+...+.+.++.|
T Consensus 113 GfaFV~f--~~~~~a~~Ai~~l 132 (229)
T 3q2s_C 113 GFALVGV--GSEASSKKLMDLL 132 (229)
T ss_dssp EEEEEEE--SCTTHHHHHHTTS
T ss_pred eEEEEEE--CCHHHHHHHHHHc
Confidence 4444444 3444444444433
No 498
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=26.82 E-value=55 Score=33.96 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhccCCCCCCCEEEEEc
Q 005313 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 253 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~l~~l~~~~~~~~~g~~vLIl~ 253 (703)
+++.+..|.|||.++.-.+...... +.++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~-------G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK-------GLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS-------SCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 3445899999998766544444332 34666665
No 499
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=26.19 E-value=1.9e+02 Score=29.41 Aligned_cols=10 Identities=20% Similarity=0.179 Sum_probs=8.6
Q ss_pred cEEEeccccc
Q 005313 323 YLVLDEADRM 332 (703)
Q Consensus 323 ~IViDEaH~m 332 (703)
+||+||+|..
T Consensus 156 ~li~D~a~~~ 165 (393)
T 1mdo_A 156 PVIEDAAHAT 165 (393)
T ss_dssp CBCEECTTCT
T ss_pred eEEEECcccc
Confidence 6899999975
No 500
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=26.17 E-value=37 Score=31.08 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=0.0
Q ss_pred EEEEecCCChHHHHHHHHH
Q 005313 214 IVAIAKTGSGKTLGYLLPG 232 (703)
Q Consensus 214 vlv~ApTGsGKTla~llp~ 232 (703)
+++.++.|+|||..+-..+
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Done!