BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005314
(703 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/579 (38%), Positives = 340/579 (58%), Gaps = 4/579 (0%)
Query: 123 LCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFE--PADELRKDTDFWA 180
R+ LN E P ++G A + G + P ++ S + F P + R++++ ++
Sbjct: 693 FWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFS 752
Query: 181 LMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGA 240
L++L L I + L+ + F AG L KR+R M F+ ++ +VSWFD+P +++GA+
Sbjct: 753 LLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTT 812
Query: 241 RLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQXXXXXXXXXXXXXXNGYAHM 300
RL+ D+A V+ G L + QNIA L G+II+ WQ G M
Sbjct: 813 RLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEM 872
Query: 301 KFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGL 360
K L G + KK E + ++A +A+ + RTV S E+K +Y + P + +K+
Sbjct: 873 KMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932
Query: 361 IGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAP 420
+ G+ F + ++Y YA +F GA LV TF+ V VF A+ A + Q AP
Sbjct: 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP 992
Query: 421 EASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDL 480
+ ++A + + + I+++ +IDS G ++G+++F + F YP RP + + + L
Sbjct: 993 DYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGL 1052
Query: 481 CLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLV 540
L + G+ +ALVG SG GKSTV+ LL+RFYDP G + LDG EI++L ++WLR Q+G+V
Sbjct: 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112
Query: 541 SQEPVLFNDTVRVNIAYGKEGXXXXXXX-XXXXXXXXXHQFISSLKQGYDTIVGERGIQL 599
SQEP+LF+ ++ NIAYG HQFI SL Y+T VG++G QL
Sbjct: 1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172
Query: 600 SGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLST 659
SGGQKQR+AIARA+V+ P ILLLDEATSALD ESE+V+Q+AL++ GRT +VIAHRLST
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST 1232
Query: 660 IRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQ 698
I++ADLI V++NG + E G H+ L+ K GIY S+V++Q
Sbjct: 1233 IQNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMVSVQ 1270
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 221/582 (37%), Positives = 332/582 (57%), Gaps = 22/582 (3%)
Query: 137 LLLGSIAAGVLGVMLPILGILLSGAIKSF------------FEPADE------LRKDTDF 178
+L+G++AA + GV LP++ ++ SF AD+ L ++
Sbjct: 50 MLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTT 109
Query: 179 WALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAI 238
+A Y + L+ ++ F+ +A + I +IR F ++ E+ WFD H G +
Sbjct: 110 YAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGEL 167
Query: 239 GARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQXXXXXXXXXXXXXXNGYA 298
RL+ D + + +GD +G+ Q +AT F G II F W+ +
Sbjct: 168 NTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGI 227
Query: 299 HMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQ 358
K L F+ Y +A VA + + +IRTV +F ++K +E Y + GIK+
Sbjct: 228 WAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKK 287
Query: 359 GLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGIL 418
+ ++ G +F L+YA YA +F+ G LV + + + +V VFF++ + A + Q+
Sbjct: 288 AITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPN 347
Query: 419 APEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFR 478
+ A+ A V+ I+D K IDS +SG +N++G++EF++I F YP+R +VQI +
Sbjct: 348 IEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILK 407
Query: 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538
L L + SG+ VALVG SG GKST + L+QR YDP G +++DG +I+ + +++LR+ +G
Sbjct: 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIG 467
Query: 539 LVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQ 598
+VSQEPVLF T+ NI YG+E + FI L +DT+VGERG Q
Sbjct: 468 VVSQEPVLFATTIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ 526
Query: 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLS 658
LSGGQKQR+AIARA+V+ PKILLLDEATSALD ESE V+Q AL++ GRTT+VIAHRLS
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586
Query: 659 TIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQTS 700
T+R+AD+IA GVI E+G H+ L+ K GIY LV QT+
Sbjct: 587 TVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVMTQTA 627
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/579 (38%), Positives = 339/579 (58%), Gaps = 4/579 (0%)
Query: 123 LCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFE--PADELRKDTDFWA 180
R+ LN E P ++G A + G + P ++ S + F P + R++++ ++
Sbjct: 693 FWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFS 752
Query: 181 LMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGA 240
L++L L I + L+ + F AG L KR+R M F+ ++ +VSWFD+P +++GA+
Sbjct: 753 LLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTT 812
Query: 241 RLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQXXXXXXXXXXXXXXNGYAHM 300
RL+ D+A V+ G L + QNIA L G+II+ WQ G M
Sbjct: 813 RLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEM 872
Query: 301 KFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGL 360
K L G + KK E + ++A +A+ + RTV S E+K +Y + P + +K+
Sbjct: 873 KMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932
Query: 361 IGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAP 420
+ G+ F + ++Y YA F GA LV TF+ V VF A+ A + Q AP
Sbjct: 933 VFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP 992
Query: 421 EASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDL 480
+ ++A + + + I+++ +IDS G ++G+++F + F YP RP + + + L
Sbjct: 993 DYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGL 1052
Query: 481 CLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLV 540
L + G+ +ALVG SG GKSTV+ LL+RFYDP G + LDG EI++L ++WLR Q+G+V
Sbjct: 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112
Query: 541 SQEPVLFNDTVRVNIAYGKEGXXXXXXX-XXXXXXXXXHQFISSLKQGYDTIVGERGIQL 599
SQEP+LF+ ++ NIAYG HQFI SL Y+T VG++G QL
Sbjct: 1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172
Query: 600 SGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLST 659
SGGQKQR+AIARA+V+ P ILLLDEATSALD ESE+V+Q+AL++ GRT +VIAHRLST
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST 1232
Query: 660 IRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQ 698
I++ADLI V++NG + E G H+ L+ K GIY S+V++Q
Sbjct: 1233 IQNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMVSVQ 1270
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 221/582 (37%), Positives = 332/582 (57%), Gaps = 22/582 (3%)
Query: 137 LLLGSIAAGVLGVMLPILGILLSGAIKSF------------FEPADE------LRKDTDF 178
+L+G++AA + GV LP++ ++ SF AD+ L ++
Sbjct: 50 MLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTT 109
Query: 179 WALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAI 238
+A Y + L+ ++ F+ +A + I +IR F ++ E+ WFD H G +
Sbjct: 110 YAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGEL 167
Query: 239 GARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQXXXXXXXXXXXXXXNGYA 298
RL+ D + + +GD +G+ Q +AT F G II F W+ +
Sbjct: 168 NTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGI 227
Query: 299 HMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQ 358
K L F+ Y +A VA + + +IRTV +F ++K +E Y + GIK+
Sbjct: 228 WAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKK 287
Query: 359 GLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGIL 418
+ ++ G +F L+YA YA +F+ G LV + + + +V VFF++ + A + Q+
Sbjct: 288 AITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPN 347
Query: 419 APEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFR 478
+ A+ A V+ I+D K IDS +SG +N++G++EF++I F YP+R +VQI +
Sbjct: 348 IEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILK 407
Query: 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538
L L + SG+ VALVG SG GKST + L+QR YDP G +++DG +I+ + +++LR+ +G
Sbjct: 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIG 467
Query: 539 LVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQ 598
+VSQEPVLF T+ NI YG+E + FI L +DT+VGERG Q
Sbjct: 468 VVSQEPVLFATTIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ 526
Query: 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLS 658
LSGGQKQR+AIARA+V+ PKILLLDEATSALD ESE V+Q AL++ GRTT+VIAHRLS
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586
Query: 659 TIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQTS 700
T+R+AD+IA GVI E+G H+ L+ K GIY LV QT+
Sbjct: 587 TVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVMTQTA 627
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 216/584 (36%), Positives = 317/584 (54%), Gaps = 27/584 (4%)
Query: 137 LLLGSIAAGVLGVMLPILGILLSGAIKSF-------------FEPADELRKDTDF----- 178
L +G++ A + G LP++ IL ++F F P + TDF
Sbjct: 77 LFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136
Query: 179 ---WALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSS 235
W+ Y + + A + + ++ R+R + ++ E+SWFD + S
Sbjct: 137 NVVWS--YAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT--NHS 192
Query: 236 GAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQXXXXXXXXXXXXXXN 295
G + +L + V+ GD +G+ Q ++ G I+AF +WQ
Sbjct: 193 GTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALC 252
Query: 296 GYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKG 355
G+A K + F+ Y +A +V + + SIRTV S +E Y K G
Sbjct: 253 GFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAG 312
Query: 356 IKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQS 415
+ +GL G++FG + +A +FY G V G F ++ F ++ M + L +
Sbjct: 313 VLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLA 372
Query: 416 GILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQ 475
G A+ A + +Y +LDRK IDSS ++G +KGDI +++ F YP+RPDV
Sbjct: 373 GPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVP 432
Query: 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535
I R + L + +G+ VALVG SG GKST+ISLL R+YD G IT+DGV+++ + L++LR+
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492
Query: 536 QMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGER 595
+ +VSQEP LFN T+ NI+ GKEG +FI +L GY+T+VG+R
Sbjct: 493 NVAVVSQEPALFNCTIEENISLGKEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDR 551
Query: 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAH 655
G QLSGGQKQR+AIARA+V+ PKILLLDEATSALDAESE ++Q AL++ GRTT++IAH
Sbjct: 552 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611
Query: 656 RLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQT 699
RLSTIR+ADLI KNG + E G H L+ + G+Y LV QT
Sbjct: 612 RLSTIRNADLIISCKNGQVVEVGDHRALM-AQQGLYYDLVTAQT 654
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/565 (36%), Positives = 320/565 (56%), Gaps = 6/565 (1%)
Query: 131 KPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFF-EPADELRKDTDFWALMYLFLAIA 189
+P +L +G A + G + P + + + F PAD L + FWALM+L LA A
Sbjct: 748 RPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQG-HFWALMFLVLAAA 806
Query: 190 CLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASV 249
+ L ++F +A L + +R+ F V+ + +FD P ++SG I RL+ D ++
Sbjct: 807 QGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNL 866
Query: 250 RSVVGDALGLHVQNIATLFAGVIIAFEANWQXXXXXXXXXXXXXXNGYAHMKFLKGFSAD 309
R+ + + + ++ AG+ +AF WQ Y + G +
Sbjct: 867 RTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVK 926
Query: 310 SKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGIS 369
S + ++ ++A +A+ ++RTV + E+ E + +K P K+ IK+ I G+++G +
Sbjct: 927 SASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCA 986
Query: 370 FFLLYAVYACSFYAGARLVEAGKTTFQ--EVFRVFFALSMAATGLSQSGILAPEASRAKS 427
+LY + C++ G L+ T Q V RV +A++++ + L + PE ++A
Sbjct: 987 SSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATF 1046
Query: 428 AIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSG 487
A ++ +L + SKIDS +G + + G + F+++ F YP RP+++I + L ++ G
Sbjct: 1047 AGGIIFGMLRKISKIDSLSLAGEK-KKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPG 1105
Query: 488 KMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 547
+ +ALVG SG GKSTV++LL+RFYD G I +DG EI+ L + R Q+ +VSQEP LF
Sbjct: 1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165
Query: 548 NDTVRVNIAYGKE-GXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQR 606
+ ++ NI YG + H FI+ L +G++T VG+RG QLSGGQKQR
Sbjct: 1166 DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQR 1225
Query: 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLI 666
+AIARA+V+ PKILLLDEATSALD ESE+V+Q+AL+R GRT +VIAHRL+T+ +AD I
Sbjct: 1226 IAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCI 1285
Query: 667 AVVKNGVIAEKGKHETLVHVKDGIY 691
AVV NG I EKG H L+ K Y
Sbjct: 1286 AVVSNGTIIEKGTHTQLMSEKGAYY 1310
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 321 bits (823), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 187/516 (36%), Positives = 301/516 (58%), Gaps = 10/516 (1%)
Query: 193 AHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSV 252
A+ +R Y +G +++ R+R+ F ++ EV++FD+ +G + RLS+D+A +
Sbjct: 78 ANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKT--RTGELINRLSSDTALLGRS 135
Query: 253 VGDALGLHVQNIATLFAGVIIAFEANWQXXXXXXXXXXXXXXNGYAHMKFLKGFSADSKK 312
V + L ++ A G+ + F + + ++L+ + ++
Sbjct: 136 VTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQD 195
Query: 313 MYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFL 372
+A+Q+A + +G++RTV +F E +E Y K + K+ FG +
Sbjct: 196 SLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLS 255
Query: 373 LYAVYACSFYAGARLVEAGKTTFQEV--FRVF-FALSMAATGLSQSGILAPEASRAKSAI 429
+ Y G L+ + T E+ F ++ F + ++ GLS E + A
Sbjct: 256 GNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSS---FYSELMKGLGAG 312
Query: 430 ASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKM 489
++ +L+R+ K+ ++ ++ +G +EF+++ F YPARP+V IF+D L+IPSG +
Sbjct: 313 GRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSV 372
Query: 490 VALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND 549
ALVG SGSGKSTV+SLL R YDP +G I+LDG +I++L WLR ++G VSQEP+LF+
Sbjct: 373 TALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC 432
Query: 550 TVRVNIAYGKEGXXXXXXXXXXXXXXXXHQ--FISSLKQGYDTIVGERGIQLSGGQKQRV 607
++ NIAYG + + FI + QG++T+VGE+G+ LSGGQKQR+
Sbjct: 433 SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI 492
Query: 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIA 667
AIARA++K PKILLLDEATSALDAE+E ++Q+AL+R+M GRT +VIAHRLSTI++A+++A
Sbjct: 493 AIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVA 552
Query: 668 VVKNGVIAEKGKHETLVHVKDGIYASLVALQTSVSS 703
V+ G I E GKHE L+ +GIY L+ Q+ +S+
Sbjct: 553 VLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFISA 588
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 318 bits (815), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 186/516 (36%), Positives = 300/516 (58%), Gaps = 10/516 (1%)
Query: 193 AHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSV 252
A+ +R Y +G +++ R+R+ F ++ EV++FD+ +G + RLS+D+A +
Sbjct: 109 ANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK--TRTGELINRLSSDTALLGRS 166
Query: 253 VGDALGLHVQNIATLFAGVIIAFEANWQXXXXXXXXXXXXXXNGYAHMKFLKGFSADSKK 312
V + L ++ A G+ + F + + ++L+ + ++
Sbjct: 167 VTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQD 226
Query: 313 MYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFL 372
+A+Q+A + +G++RTV +F E +E Y K + K+ FG +
Sbjct: 227 SLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLS 286
Query: 373 LYAVYACSFYAGARLVEAGKTTFQEV--FRVF-FALSMAATGLSQSGILAPEASRAKSAI 429
+ Y G L+ + T E+ F ++ F + ++ GLS E + A
Sbjct: 287 GNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSS---FYSELMKGLGAG 343
Query: 430 ASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKM 489
++ +L+R+ K+ ++ ++ +G +EF+++ F YPARP+V IF+D L+IPSG +
Sbjct: 344 GRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSV 403
Query: 490 VALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND 549
ALVG SGSGKSTV+SLL R YDP +G I+LDG +I++L WLR ++G VSQEP+LF+
Sbjct: 404 TALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC 463
Query: 550 TVRVNIAYGKEGXXXXXXXXXXXXXXXXHQ--FISSLKQGYDTIVGERGIQLSGGQKQRV 607
++ NIAYG + + FI + QG++T+VGE+G+ LSGGQKQR+
Sbjct: 464 SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI 523
Query: 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIA 667
AIARA++K PKILLLDEATSALDAE+E ++Q+AL+R+M GRT +VIAH LSTI++A+++A
Sbjct: 524 AIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVA 583
Query: 668 VVKNGVIAEKGKHETLVHVKDGIYASLVALQTSVSS 703
V+ G I E GKHE L+ +GIY L+ Q+ +S+
Sbjct: 584 VLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFISA 619
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 204/585 (34%), Positives = 299/585 (51%), Gaps = 41/585 (7%)
Query: 132 PEIPALLLGSIAAGVLGVMLPILGILLSGAIKSF----FEPA-DELRKDTDFWALMYLFL 186
P I G I AG+ ++L+ A +F +P D+ TD L+++ L
Sbjct: 18 PTIAPFKAGLIVAGI--------ALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPL 69
Query: 187 AIACLL-----AHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGAR 241
+ L+ + SY + K++ +R F ++ M V++FD+ S+G + +R
Sbjct: 70 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSR 127
Query: 242 LSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQXXXXXXXXXXXXXXNGYAHMK 301
++ DS V S AL V+ A++ I+ F +WQ A
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIV---SIAIRV 184
Query: 302 FLKGFSADSKKMYEEASQVANDAVGSIR---TVASFCAEEKVMELYQKKCGGPSKKGIKQ 358
K F + SK M QV A ++ V F +E + + K +G+K
Sbjct: 185 VSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 244
Query: 359 GLIGGVAFGI-----SFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLS 413
++ I S L + +YA SF + + AG T VF AL L+
Sbjct: 245 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITV--VFSSMIALMRPLKSLT 302
Query: 414 QSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPD 473
+ + R +A +++AILD + + DE I+ GD+EF+++TF YP R +
Sbjct: 303 N---VNAQFQRGMAACQTLFAILDSEQE---KDEGKRVIDRATGDLEFRNVTFTYPGR-E 355
Query: 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL 533
V R++ L IP+GK VALVG SGSGKST+ SL+ RFYD D GHI +DG ++++ L L
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415
Query: 534 RQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVG 593
R Q+ LVSQ LFNDTV NIAY + FI+ + G DTI+G
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG 475
Query: 594 ERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVI 653
E G+ LSGGQ+QR+AIARA+++ IL+LDEATSALD ESER IQ AL+ + RT++VI
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
Query: 654 AHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQ 698
AHRLSTI AD I VV++G+I E+G H L+ + G+YA L +Q
Sbjct: 536 AHRLSTIEQADEIVVVEDGIIVERGTHSELL-AQHGVYAQLHKMQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 281 bits (720), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 200/582 (34%), Positives = 295/582 (50%), Gaps = 35/582 (6%)
Query: 132 PEIPALLLGSIAAGVLGVMLPILGILLSGAIKSF----FEPA-DELRKDTDFWALMYLFL 186
P I G I AGV ++L+ A +F +P D+ TD L+++ L
Sbjct: 18 PTIAPFKAGLIVAGV--------ALILNAASDTFMLSLLKPLLDDGFGKTDRSVLVWMPL 69
Query: 187 AIACLL-----AHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGAR 241
+ L+ + SY + K++ +R F ++ M VS+FD+ S+G + +R
Sbjct: 70 VVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSR 127
Query: 242 LSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQXXXXXXXXXXXXXXNGYAHMK 301
++ DS V S AL V+ A++ I+ F +WQ K
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSK 187
Query: 302 FLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLI 361
+ S + + + + A + + V F +E + + K +G+K
Sbjct: 188 RFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSA 247
Query: 362 GGVAFGI-----SFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSG 416
++ I S L + +YA SF + + AG T VF AL L+
Sbjct: 248 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITV--VFSSMIALMRPLKSLTN-- 303
Query: 417 ILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQI 476
+ + R +A +++ ILD + + DE IE GD+EF+++TF YP R DV
Sbjct: 304 -VNAQFQRGMAACQTLFTILDSEQE---KDEGKRVIERATGDVEFRNVTFTYPGR-DVPA 358
Query: 477 FRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536
R++ L IP+GK VALVG SGSGKST+ SL+ RFYD D G I +DG ++++ L LR Q
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ 418
Query: 537 MGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERG 596
+ LVSQ LFNDTV NIAY + FI+ + G DT++GE G
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 597 IQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHR 656
+ LSGGQ+QR+AIARA+++ IL+LDEATSALD ESER IQ AL+ + RT++VIAHR
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
Query: 657 LSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQ 698
LSTI AD I VV++GVI E+G H L+ + G+YA L +Q
Sbjct: 539 LSTIEKADEIVVVEDGVIVERGTHNDLLEHR-GVYAQLHKMQ 579
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 251 bits (642), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 171/509 (33%), Positives = 258/509 (50%), Gaps = 23/509 (4%)
Query: 198 SYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDAL 257
SY + ++ ++R F ++M V +FD+ S+G + +R++ DS V AL
Sbjct: 86 SYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITYDSEQVAGATSRAL 143
Query: 258 GLHVQNIATLFAGVIIAFEANWQXXXXXXXXXXXXXXNGYAHMKFLKGFSADSKKMYEEA 317
V+ A++ + + F +WQ +A K F S+ M
Sbjct: 144 VSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVV---AFAISFVSKRFRKISRNMQTAM 200
Query: 318 SQVANDAVGSIR---TVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFG---ISFF 371
V + A ++ V S+ +E + + K ++ +K L+ + I
Sbjct: 201 GHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK--LVSAQSIADPVIQMI 258
Query: 372 LLYAVYACSFYAGARLVEAGKT--TFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAI 429
A++A F A + A T TF VF F L L+ + E R +A
Sbjct: 259 ASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTS---VTSEFQRGMAAC 315
Query: 430 ASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKM 489
+++ ++D +++ D+ E V G+++ + +TF Y + + + +IP GK
Sbjct: 316 QTLFGLMDLETERDNGKYEA---ERVNGEVDVKDVTFTYQGKEKPAL-SHVSFSIPQGKT 371
Query: 490 VALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND 549
VALVG SGSGKST+ +L RFYD D+G I LDG +++ +L LR+ LVSQ LFND
Sbjct: 372 VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND 431
Query: 550 TVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609
T+ NIAY EG +FI ++ QG DT++GE G LSGGQ+QRVAI
Sbjct: 432 TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAI 491
Query: 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVV 669
ARA+++ +L+LDEATSALD ESER IQ AL+ + +T +VIAHRLSTI AD I VV
Sbjct: 492 ARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVV 551
Query: 670 KNGVIAEKGKHETLVHVKDGIYASLVALQ 698
G I E+G+H L+ +DG YA L +Q
Sbjct: 552 DEGEIIERGRHADLL-AQDGAYAQLHRIQ 579
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 236 bits (601), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 155/491 (31%), Positives = 255/491 (51%), Gaps = 14/491 (2%)
Query: 211 RIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAG 270
R+R FEK+ + V +FD H G I +R+ D ++ +V+G+++ I TL
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPH--GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGA 168
Query: 271 VIIAFEANWQXXXXXXXXXXXXXXNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRT 330
VI+ F N + + +++++ + + + + + +
Sbjct: 169 VIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTV 228
Query: 331 VASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEA 390
+ F EEK ME + + K G K + GV + + +A G L
Sbjct: 229 IKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALK 288
Query: 391 GKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIAS---VYAILDRKSKIDSSDE 447
T + F S T L+ + + + A+AS ++ ILD + + D D
Sbjct: 289 DIITVGTI-ATFIGYSRQFTRPLNE--LSNQFNMIQMALASAERIFEILDLEEEKDDPD- 344
Query: 448 SGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLL 507
+ V+G+IEF+++ F Y + V +D+ I G+ VALVG +GSGK+T+++LL
Sbjct: 345 -AVELREVRGEIEFKNVWFSYDKKKPV--LKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
Query: 508 QRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXX 567
RFYD D G I +DG++I+K++ LR +G+V Q+ +LF+ TV+ N+ YG G
Sbjct: 402 MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI 461
Query: 568 XXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATS 627
H FI L +GY+T++ + G LS GQ+Q +AI RA + PKIL+LDEATS
Sbjct: 462 KEAAKLTHSDH-FIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATS 520
Query: 628 ALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVK 687
+D ++E+ IQ A+ ++M G+T+++IAHRL+TI++ADLI V+++G I E GKH+ L+ K
Sbjct: 521 NVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ-K 579
Query: 688 DGIYASLVALQ 698
G Y L Q
Sbjct: 580 RGFYYELFTSQ 590
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 218 bits (555), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 121/277 (43%), Positives = 172/277 (62%), Gaps = 4/277 (1%)
Query: 423 SRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCL 482
+++ +++ V+ ++D I + IE +G I+ H++F+Y + I +D+ L
Sbjct: 305 TQSFASMDRVFQLIDEDYDIKNG-VGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINL 362
Query: 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQ 542
+I G+ VA VG SG GKST+I+L+ RFYD +G I +DG I+ LR Q+GLV Q
Sbjct: 363 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ 422
Query: 543 EPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGG 602
+ +LF+DTV+ NI G+ H FI +L QGYDT VGERG++LSGG
Sbjct: 423 DNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG 481
Query: 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD 662
QKQR++IAR + P IL+LDEATSALD ESE +IQ+AL+ + RTT+++AHRLSTI
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 541
Query: 663 ADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQT 699
AD I V++NG I E G H L+ K G Y L ++Q
Sbjct: 542 ADKIVVIENGHIVETGTHRELI-AKQGAYEHLYSIQN 577
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 161/243 (66%), Gaps = 4/243 (1%)
Query: 458 DIEFQHITFKYPARPDVQIFRD-LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG 516
DI F++I F+Y +PD + D + L+I G+++ +VG SGSGKST+ L+QRFY P+ G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 517 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXX 576
+ +DG ++ WLR+Q+G+V Q+ VL N ++ NI+ G
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 577 XHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERV 636
H FIS L++GY+TIVGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V
Sbjct: 119 -HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 637 IQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696
I + ++ GRT ++IAHRLST+++AD I V++ G I E+GKH+ L+ + +Y+ L
Sbjct: 178 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Query: 697 LQT 699
LQ+
Sbjct: 238 LQS 240
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 161/243 (66%), Gaps = 4/243 (1%)
Query: 458 DIEFQHITFKYPARPDVQIFRD-LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG 516
DI F++I F+Y +PD + D + L+I G+++ +VG SGSGKST+ L+QRFY P+ G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 517 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXX 576
+ +DG ++ WLR+Q+G+V Q+ VL N ++ NI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 577 XHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERV 636
H FIS L++GY+TIVGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V
Sbjct: 125 -HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 637 IQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696
I + ++ GRT ++IAHRLST+++AD I V++ G I E+GKH+ L+ + +Y+ L
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Query: 697 LQT 699
LQ+
Sbjct: 244 LQS 246
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 161/243 (66%), Gaps = 4/243 (1%)
Query: 458 DIEFQHITFKYPARPDVQIFRD-LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG 516
DI F++I F+Y +PD + D + L+I G+++ +VG SGSGKST+ L+QRFY P+ G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 517 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXX 576
+ +DG ++ WLR+Q+G+V Q+ VL N ++ NI+ G
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 577 XHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERV 636
H FIS L++GY+TIVGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V
Sbjct: 121 -HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 637 IQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696
I + ++ GRT ++IAHRLST+++AD I V++ G I E+GKH+ L+ + +Y+ L
Sbjct: 180 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 239
Query: 697 LQT 699
LQ+
Sbjct: 240 LQS 242
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 215 bits (547), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 161/243 (66%), Gaps = 4/243 (1%)
Query: 458 DIEFQHITFKYPARPDVQIFRD-LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG 516
DI F++I F+Y +PD + D + L+I G+++ +VG SGSGKST+ L+QRFY P+ G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 517 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXX 576
+ +DG ++ WLR+Q+G+V Q+ VL N ++ NI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 577 XHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERV 636
H FIS L++GY+TIVGE+G LSGGQ+QR+AIARA+V PKIL+ D+ATSALD ESE V
Sbjct: 125 -HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHV 183
Query: 637 IQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696
I + ++ GRT ++IAHRLST+++AD I V++ G I E+GKH+ L+ + +Y+ L
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Query: 697 LQT 699
LQ+
Sbjct: 244 LQS 246
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 215 bits (547), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 161/243 (66%), Gaps = 4/243 (1%)
Query: 458 DIEFQHITFKYPARPDVQIFRD-LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG 516
DI F++I F+Y +PD + D + L+I G+++ +VG +GSGKST+ L+QRFY P+ G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 517 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXX 576
+ +DG ++ WLR+Q+G+V Q+ VL N ++ NI+ G
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 577 XHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERV 636
H FIS L++GY+TIVGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V
Sbjct: 121 -HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 637 IQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696
I + ++ GRT ++IAHRLST+++AD I V++ G I E+GKH+ L+ + +Y+ L
Sbjct: 180 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 239
Query: 697 LQT 699
LQ+
Sbjct: 240 LQS 242
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/281 (42%), Positives = 175/281 (62%), Gaps = 5/281 (1%)
Query: 418 LAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIF 477
L P S + +++ +L ++++ +G + KG IEF+++ F Y +
Sbjct: 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGP-LRFQKGRIEFENVHFSYA--DGRETL 70
Query: 478 RDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537
+D+ + G+ +ALVG SG+GKST++ LL RFYD +G I +DG +I ++ LR +
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 538 GLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGI 597
G+V Q+ VLFNDT+ NI YG+ H I + +GY T VGERG+
Sbjct: 131 GVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGL 189
Query: 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRL 657
+LSGG+KQRVAIAR ++KAP I+LLDEATSALD +ER IQ +L +V RTT+V+AHRL
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249
Query: 658 STIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQ 698
ST+ +AD I V+K+G I E+G+HE L+ + G+YA + LQ
Sbjct: 250 STVVNADQILVIKDGCIVERGRHEALLS-RGGVYADMWQLQ 289
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 160/243 (65%), Gaps = 4/243 (1%)
Query: 458 DIEFQHITFKYPARPDVQIFRD-LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG 516
DI F++I F+Y +PD + D + L+I G+++ +VG SGSGKST+ L+QRFY P+ G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 517 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXX 576
+ +DG ++ WLR+Q+G+V Q+ VL N ++ NI+ G
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 577 XHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERV 636
H FIS L++GY+TIVGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V
Sbjct: 119 -HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 637 IQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696
I + ++ GRT ++IA RLST+++AD I V++ G I E+GKH+ L+ + +Y+ L
Sbjct: 178 IMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Query: 697 LQT 699
LQ+
Sbjct: 238 LQS 240
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 160/243 (65%), Gaps = 4/243 (1%)
Query: 458 DIEFQHITFKYPARPDVQIFRD-LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG 516
DI F++I F+Y +PD + D + L+I G+++ +VG SGSGKST+ L+QRFY P+ G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 517 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXX 576
+ +DG ++ WLR+Q+G+V Q+ VL N ++ NI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 577 XHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERV 636
H FIS L++GY+TIVGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V
Sbjct: 125 -HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 637 IQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696
I + ++ GRT ++IA RLST+++AD I V++ G I E+GKH+ L+ + +Y+ L
Sbjct: 184 IMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Query: 697 LQT 699
LQ+
Sbjct: 244 LQS 246
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 147/240 (61%), Gaps = 3/240 (1%)
Query: 462 QHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD 521
+H+ F Y QI RD+ ++A G SG GKST+ SLL+RFY P G IT+D
Sbjct: 5 RHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 522 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFI 581
G I + L+ R Q+G VSQ+ + T+R N+ YG EG F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 582 SSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDAL 641
++ +T VGERG+++SGGQ+QR+AIARA ++ PKIL+LDEAT++LD+ESE ++Q AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 642 ERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQTSV 701
+ +M GRTT+VIAHRLSTI DAD I ++ G I GKH LV +YA V+ Q +V
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP-LYAKYVSEQLTV 241
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 153/242 (63%), Gaps = 3/242 (1%)
Query: 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGH 517
+IEF + F YP + + + + + IPSG ALVG +GSGKST+ LL RFYD + G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GD 75
Query: 518 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXX 577
I + G + K +R +G+V Q+ +LFN+T++ NI YGK
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQL- 134
Query: 578 HQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVI 637
+ FI +L + +DTIVG +G++LSGG++QR+AIAR ++K PKI++ DEATS+LD+++E +
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF 194
Query: 638 QDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVAL 697
Q A+E + RT ++IAHRLSTI A+ I ++ G I EKG H+ L+ + +G YA + +
Sbjct: 195 QKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253
Query: 698 QT 699
Q+
Sbjct: 254 QS 255
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 144/244 (59%), Gaps = 3/244 (1%)
Query: 454 NVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP 513
N+KG ++FQ ++F YP P+VQ+ + L + GK+ ALVG +GSGKSTV +LLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 514 DTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXX 573
G + LDG + + +L Q+ V QEP+LF + R NIAYG
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 574 XXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAES 633
H FIS QGYDT VGE G QLSGGQ+Q VA+ARA+++ P++L+LD+ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 634 ERVIQDALERV--MVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIY 691
+ +Q L RT ++I H+LS A I +K G + E+G H L+ + G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCY 250
Query: 692 ASLV 695
S+V
Sbjct: 251 RSMV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 142/244 (58%), Gaps = 3/244 (1%)
Query: 454 NVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP 513
N+KG ++FQ ++F YP P+VQ+ + L + GK+ ALVG +GSGKSTV +LLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 514 DTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXX 573
G + LDG + + +L Q+ V QEP+LF + R NIAYG
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 574 XXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAES 633
H FIS QGYDT VGE G QLSGGQ+Q VA+ARA+++ P++L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 634 ERVIQDALERV--MVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIY 691
+ +Q L RT ++I +LS A I +K G + E+G H L+ + G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCY 250
Query: 692 ASLV 695
S+V
Sbjct: 251 RSMV 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 150/246 (60%), Gaps = 7/246 (2%)
Query: 454 NVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP 513
+++G ++FQ ++F YP RPDV + + L + G++ ALVG +GSGKSTV +LLQ Y P
Sbjct: 10 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 69
Query: 514 DTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXX 573
G + LDG + + + ++L +Q+ V QEP +F +++ NIAYG
Sbjct: 70 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 129
Query: 574 XXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAES 633
H FIS L QGYDT V E G QLSGGQ+Q VA+ARA+++ P +L+LD+ATSALDA S
Sbjct: 130 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
Query: 634 ----ERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDG 689
E+++ ++ ER R+ ++I LS + AD I ++ G I E G H+ L+ K G
Sbjct: 190 QLQVEQLLYESPER--YSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKG 246
Query: 690 IYASLV 695
Y ++V
Sbjct: 247 CYWAMV 252
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 141/244 (57%), Gaps = 3/244 (1%)
Query: 454 NVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP 513
N+KG ++FQ ++F YP P+VQ+ + L + GK+ ALVG +GSGKSTV +LLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 514 DTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXX 573
G + LDG + + +L Q+ V QEP+LF + R NIAYG
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 574 XXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAES 633
H FIS QGYDT VGE G QL+ GQ+Q VA+ARA+++ P++L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 634 ERVIQDALERV--MVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIY 691
+ +Q L RT ++I +LS A I +K G + E+G H L+ + G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCY 250
Query: 692 ASLV 695
S+V
Sbjct: 251 RSMV 254
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 135/483 (27%), Positives = 237/483 (49%), Gaps = 18/483 (3%)
Query: 212 IRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGV 271
+R F KV+ +S + H+S I RL+ D ++++V L + V+ G+
Sbjct: 98 LRRDLFRKVLSFSISNVNR-FHTSSLI-TRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGI 155
Query: 272 IIAFEANWQXXXXXXXXXXXXXXNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTV 331
++A N + K ++ +E ++V + + +R V
Sbjct: 156 VMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVV 215
Query: 332 ASFCAEEKVMELYQKKCGGPSKKGIKQGLIGG---VAFGISFFLL---YAVYACSFYAGA 385
+F EE E ++K + + +++ +I + F + F+ + A ++ G
Sbjct: 216 RAFRREEYENENFRK-----ANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGV 270
Query: 386 RLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSS 445
LV + + L L G + RA ++ V +L+ K I+ +
Sbjct: 271 -LVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA 329
Query: 446 DESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVIS 505
D + + NV+G + F+++ F+Y D + + ++ G +VA++GE+GSGKST+++
Sbjct: 330 D-NALALPNVEGSVSFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGETGSGKSTLMN 387
Query: 506 LLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXX 565
L+ R DP+ G + +D ++++ ++LK LR + V QE VLF+ T++ N+ +G+E
Sbjct: 388 LIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDD 447
Query: 566 XXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEA 625
H FI SL +GYD+ V G SGGQKQR++IARA+VK PK+L+LD+
Sbjct: 448 EIVEAAKIAQI-HDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDC 506
Query: 626 TSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKH-ETLV 684
TS++D +E+ I D L+R G TT +I ++ T AD I V+ G +A G H E L
Sbjct: 507 TSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
Query: 685 HVK 687
H K
Sbjct: 567 HCK 569
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 20/240 (8%)
Query: 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518
I ++ TF + AR D + +IP G +VA+VG+ G GKS+++S L D GH+
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 519 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXH 578
+ G Q W++ ND++R NI +G +
Sbjct: 63 AIKGSVAYVPQQAWIQ-------------NDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 579 QFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAE-SERVI 637
I L G T +GE+G+ LSGGQKQRV++ARA+ I L D+ SA+DA + +
Sbjct: 110 LEI--LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 638 QDAL--ERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLV 695
++ + + ++ +T +++ H +S + D+I V+ G I+E G ++ L+ +DG +A +
Sbjct: 168 ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELL-ARDGAFAEFL 226
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 112/211 (53%), Gaps = 13/211 (6%)
Query: 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL---QL 530
+Q ++ L +P+G++ ++G SG+GKST+I + P G + +DG E+ L +L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 77
Query: 531 KWLRQQMGLVSQE-PVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYD 589
R+Q+G++ Q +L + TV N+A E + L +D
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS--LVGLGDKHD 135
Query: 590 TIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERV--MVG 647
+ LSGGQKQRVAIARA+ PK+LL DEATSALD + R I + L+ + +G
Sbjct: 136 SYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 648 RTTVVIAHRLSTI-RDADLIAVVKNGVIAEK 677
T ++I H + + R D +AV+ NG + E+
Sbjct: 192 LTILLITHEMDVVKRICDCVAVISNGELIEQ 222
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 112/211 (53%), Gaps = 13/211 (6%)
Query: 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL---QL 530
+Q ++ L +P+G++ ++G SG+GKST+I + P G + +DG E+ L +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 531 KWLRQQMGLVSQE-PVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYD 589
R+Q+G++ Q +L + TV N+A E + L +D
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS--LVGLGDKHD 158
Query: 590 TIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERV--MVG 647
+ LSGGQKQRVAIARA+ PK+LL D+ATSALD + R I + L+ + +G
Sbjct: 159 SYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 648 RTTVVIAHRLSTI-RDADLIAVVKNGVIAEK 677
T ++I H + + R D +AV+ NG + E+
Sbjct: 215 LTILLITHEMDVVKRICDCVAVISNGELIEQ 245
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 13/211 (6%)
Query: 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL---QL 530
+Q ++ L +P+G++ ++G SG+GKST+I + P G + +DG E+ L +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 531 KWLRQQMGLVSQE-PVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYD 589
R+Q+G + Q +L + TV N+A E + L +D
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS--LVGLGDKHD 158
Query: 590 TIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERV--MVG 647
+ LSGGQKQRVAIARA+ PK+LL D+ATSALD + R I + L+ + +G
Sbjct: 159 SYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 648 RTTVVIAHRLSTI-RDADLIAVVKNGVIAEK 677
T ++I H + R D +AV+ NG + E+
Sbjct: 215 LTILLITHEXDVVKRICDCVAVISNGELIEQ 245
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 107/206 (51%), Gaps = 12/206 (5%)
Query: 477 FRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536
++ L I G+ +AL+G SGSGKST++ + Y P +G I D ++ +L K +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 537 MGLVSQEPVLF-NDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGER 595
+GLV Q L+ + TV NIA+ E D ++
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKML------HIDKLLNRY 130
Query: 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVI 653
QLSGGQ+QRVAIARA+VK P++LLLDE S LDA ++ L+R+ +G TTV +
Sbjct: 131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV 190
Query: 654 AH-RLSTIRDADLIAVVKNGVIAEKG 678
H + + AD IAV++ G I + G
Sbjct: 191 THDQAEALAMADRIAVIREGEILQVG 216
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 25/229 (10%)
Query: 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW 532
D ++ RD C+ L+G +G+GKS + L+ PD G + L+G +I L +
Sbjct: 19 DFEMGRDYCV---------LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE- 68
Query: 533 LRQQMGLVSQEPVLFND-TVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTI 591
R+ +G V Q+ LF +V NIAYG K G +
Sbjct: 69 -RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAE--------KLGIAHL 119
Query: 592 VGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTV 651
+ + +LSGG++QRVA+ARA+V P++LLLDE SA+D +++ V+ + L R + V
Sbjct: 120 LDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDV 178
Query: 652 VIAHRLSTIRD----ADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696
I H + + AD +AV+ NG I EKGK + L K+G A ++
Sbjct: 179 PILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 12/203 (5%)
Query: 480 LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539
+ + G+ VAL+G SG GK+T + +L Y P +G I D V + + K+ +++G+
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVGM 79
Query: 540 VSQEPVLFND-TVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQ 598
V Q L+ TV NIA+ + + D ++ + Q
Sbjct: 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL------IDNLLDRKPTQ 133
Query: 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAH- 655
LSGGQ+QRVA+ARA+VK PK+LL DE S LDA +++ ++ + +G T+V + H
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193
Query: 656 RLSTIRDADLIAVVKNGVIAEKG 678
+ + A IAV G + + G
Sbjct: 194 QAEAMTMASRIAVFNQGKLVQYG 216
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 10/215 (4%)
Query: 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ--KLQLK 531
+++ + + + I G++V ++G SGSGKST + L D D G I +DG+ ++ L
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 532 WLRQQMGLVSQEPVLF-NDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDT 590
+R+++G+V Q LF + TV NI + + K G
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAP---MKVRKWPREKAEAKAMELLD--KVGLKD 151
Query: 591 IVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRT 649
LSGGQ QRVAIARA+ PKI+L DE TSALD E + ++++ G T
Sbjct: 152 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 211
Query: 650 TVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETL 683
VV+ H + R+ D + + G I E+GK E L
Sbjct: 212 MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 10/215 (4%)
Query: 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ--KLQLK 531
+++ + + + I G++V ++G SGSGKST + L D D G I +DG+ ++ L
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 532 WLRQQMGLVSQEPVLF-NDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDT 590
+R+++G+V Q LF + TV NI + + K G
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAP---MKVRKWPREKAEAKAMELLD--KVGLKD 130
Query: 591 IVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRT 649
LSGGQ QRVAIARA+ PKI+L DE TSALD E + ++++ G T
Sbjct: 131 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 190
Query: 650 TVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETL 683
VV+ H + R+ D + + G I E+GK E L
Sbjct: 191 MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 119/237 (50%), Gaps = 38/237 (16%)
Query: 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538
+L L + SG+ ++G +G+GK+ + L+ F+ PD+G I LDG ++ L + + +
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75
Query: 539 LVSQEPVLF-NDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDT------- 590
V Q LF + V+ N+ +G + I K+ DT
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFG-----------------MRMKKIKDPKRVLDTARDLKIE 118
Query: 591 -IVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--- 646
++ + LSGG++QRVA+ARA+V PKILLLDE SALD ++ ++A E + V
Sbjct: 119 HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ---ENAREMLSVLHK 175
Query: 647 -GRTTVV-IAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHVK-DGIYASLVALQT 699
+ TV+ I H + R AD IAVV +G + + GK E + +G AS V +
Sbjct: 176 KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFEN 232
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 16/230 (6%)
Query: 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518
IEF + YP + R + I G+MV L+G SGSGK+T++ L+ P G +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 519 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TVRVNIAYG-KEGXXXXXXXXXXXXXXX 576
+ G + L + ++ +GLV Q LF TV N+++G +E
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 577 XHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERV 636
+ S + +LSGGQ+QRVA+ARA+ P++LL DE +A+D + R
Sbjct: 131 RFMRLESYANRFPH-------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE 183
Query: 637 IQDALERVM--VGRTTVVIAH-RLSTIRDADLIAVVKNGVIAEKGKHETL 683
++ + +V +G T+V + H + + AD + V+ G + + G E +
Sbjct: 184 LRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 105/232 (45%), Gaps = 20/232 (8%)
Query: 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518
IE ++F+Y + +D+ +GK+ +VG++GSGK+T++ +L G I
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA-AGEI 67
Query: 519 TLDGVEIQKLQLKWLRQQMGLVSQEPV--LFNDTVRVNIAYGKEGXXXXXXXXXXXXXXX 576
LDG L R+ +G V Q P + TV ++A+ E
Sbjct: 68 FLDGSPADPFLL---RKNVGYVFQNPSSQIIGATVEEDVAFSLE--------IMGLDESE 116
Query: 577 XHQFISSLKQ--GYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESE 634
+ I + + G + + LSGGQKQR+AIA + + + L LDE S LD S+
Sbjct: 117 MRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 635 RVIQDALERVMV-GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVH 685
R I LE + G+ +++ H L + D D I + NG I G E V
Sbjct: 177 REIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVE 228
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 111/237 (46%), Gaps = 4/237 (1%)
Query: 440 SKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSG 499
S I++S I G + + +T KY + I ++ +I G+ V L+G +GSG
Sbjct: 1 SLIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNA-ILENISFSISPGQRVGLLGRTGSG 59
Query: 500 KSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGK 559
KST++S R + + G I +DGV + L+ R+ G++ Q+ +F+ T R N+
Sbjct: 60 KSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL--DP 116
Query: 560 EGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKI 619
I D ++ + G LS G KQ + +AR+++ KI
Sbjct: 117 NAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176
Query: 620 LLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAE 676
LLLDE ++ LD + ++I+ L++ T ++ R+ + + D V++ + +
Sbjct: 177 LLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ 233
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 22/235 (9%)
Query: 459 IEFQHITFKYPARPDV-QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGH 517
I+ +++T Y ++ +++ L I G+ V++ G SGSGKST ++++ P G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 518 ITLDGVEIQKLQ----LKWLRQQMGLVSQE----PVLFN-DTVRVNIAYGKEGXXXXXXX 568
+ +D ++ L K R ++G V Q+ P+L + V + + + G
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 569 XXXXXXXXXHQFISSLKQGY--DTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEAT 626
+ + LK + + QLSGGQ+QRVAIARA+ P I+L DE T
Sbjct: 122 R--------KRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPT 173
Query: 627 SALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGK 679
ALD+++ I L+++ G+T VV+ H ++ R + I +K+G + + K
Sbjct: 174 GALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 17/218 (7%)
Query: 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEI--QKLQL 530
+ + D+ L++ G+++ ++G SG GK+T++ L F PD+G I+L G I + L
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 531 KWLRQQMGLVSQEPVLFND-TVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQ--G 587
+++G + QE VLF TV NIAYG Q I ++ + G
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYG--------LGNGKGRTAQERQRIEAMLELTG 127
Query: 588 YDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV- 646
+ G +LSGGQ+QR A+ARA+ P+++LLDE SALD + R I++ + +
Sbjct: 128 ISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA 187
Query: 647 -GRTTVVIAH-RLSTIRDADLIAVVKNGVIAEKGK-HE 681
G++ V ++H R ++ AD IAV+K G I + HE
Sbjct: 188 NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHE 225
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 118/233 (50%), Gaps = 18/233 (7%)
Query: 459 IEFQHITFKYPARPDV-QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGH 517
I+ +++T Y ++ +++ L I G+ V+++G SGSGKST+++++ P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 518 ITLDGVEIQKLQ----LKWLRQQMGLVSQE----PVLFN-DTVRVNIAYGKEGXXXXXXX 568
+ +D ++ L K R ++G V Q+ P+L + V + + + G
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 569 XXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSA 628
++ L++ + + QLSGGQ+QRVAIARA+ P I+L D+ T A
Sbjct: 122 RKRALECLK---MAELEERF---ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 629 LDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGK 679
LD+++ I L+++ G+T VV+ H ++ R + I +K+G + + K
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 118/233 (50%), Gaps = 18/233 (7%)
Query: 459 IEFQHITFKYPARPDV-QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGH 517
++ +++T Y ++ +++ L I G+ V+++G SGSGKST+++++ P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 518 ITLDGVEIQKLQ----LKWLRQQMGLVSQE----PVLFN-DTVRVNIAYGKEGXXXXXXX 568
+ +D ++ L K R ++G V Q+ P+L + V + + + G
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 569 XXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSA 628
++ L++ + + QLSGGQ+QRVAIARA+ P I+L D+ T A
Sbjct: 122 RKRALECLK---MAELEERF---ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWA 175
Query: 629 LDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGK 679
LD+++ I L+++ G+T VV+ H ++ R + I +K+G + + K
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 33/237 (13%)
Query: 437 DRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGES 496
DRK SSDE+ ++ F H+ P + +++ L I G+M+A+ G +
Sbjct: 31 DRKH---SSDEN---------NVSFSHLCL--VGNP---VLKNINLNIEKGEMLAITGST 73
Query: 497 GSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIA 556
GSGK++++ L+ + G I G ++ SQ + T++ NI
Sbjct: 74 GSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENII 120
Query: 557 YGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616
+G Q I+ + +T++GE G+ LSGGQ+ R+++ARA+ K
Sbjct: 121 FGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 178
Query: 617 PKILLLDEATSALDA-ESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672
+ LLD LD E+V + + ++M +T +++ ++ +R AD I ++ G
Sbjct: 179 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 101/212 (47%), Gaps = 16/212 (7%)
Query: 462 QHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD 521
+++F + + +++ L I G+M+A+ G +GSGK++++ L+ + G I
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 522 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFI 581
G ++ SQ + T++ NI +G Q I
Sbjct: 99 G-------------RVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDI 143
Query: 582 SSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDA-ESERVIQDA 640
+ + +T++GE G+ LSGGQ+ R+++ARA+ K + LLD LD E+V +
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 641 LERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672
+ ++M +T +++ ++ +R AD I ++ G
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 33/237 (13%)
Query: 437 DRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGES 496
DRK SSDE+ ++ F H+ P + +++ L I G+M+A+ G +
Sbjct: 31 DRKH---SSDEN---------NVSFSHLCL--VGNP---VLKNINLNIEKGEMLAITGST 73
Query: 497 GSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIA 556
GSGK++++ L+ + G I G ++ SQ + T++ NI
Sbjct: 74 GSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENII 120
Query: 557 YGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616
G Q I+ + +T++GE G+ LSGGQ+ R+++ARA+ K
Sbjct: 121 SGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 178
Query: 617 PKILLLDEATSALDA-ESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672
+ LLD LD E+V + + ++M +T +++ ++ +R AD I ++ G
Sbjct: 179 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 33/237 (13%)
Query: 437 DRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGES 496
DRK SSDE+ ++ F H+ P + +++ L I G+M+A+ G +
Sbjct: 31 DRKH---SSDEN---------NVSFSHLCL--VGNP---VLKNINLNIEKGEMLAITGST 73
Query: 497 GSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIA 556
GSGK++++ L+ + G I G ++ SQ + T++ NI
Sbjct: 74 GSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENII 120
Query: 557 YGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616
G Q I+ + +T++GE G+ LSGGQ+ R+++ARA+ K
Sbjct: 121 RGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 178
Query: 617 PKILLLDEATSALDA-ESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672
+ LLD LD E+V + + ++M +T +++ ++ +R AD I ++ G
Sbjct: 179 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535
+ +D+ I G+++A+ G +G+GK++++ ++ +P G I G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 536 QMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGER 595
++ SQ + T++ NI +G + IS + + ++GE
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127
Query: 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESER-VIQDALERVMVGRTTVVIA 654
GI LSGGQ+ R+++ARA+ K + LLD LD +E+ + + + ++M +T +++
Sbjct: 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187
Query: 655 HRLSTIRDADLIAVVKNG 672
++ ++ AD I ++ G
Sbjct: 188 SKMEHLKKADKILILHEG 205
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535
+ +D+ I G+++A+ G +G+GK++++ ++ +P G I G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 536 QMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGER 595
++ SQ + T++ NI +G + IS + + ++GE
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 139
Query: 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESER-VIQDALERVMVGRTTVVIA 654
GI LSGGQ+ R+++ARA+ K + LLD LD +E+ + + + ++M +T +++
Sbjct: 140 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 199
Query: 655 HRLSTIRDADLIAVVKNG 672
++ ++ AD I ++ G
Sbjct: 200 SKMEHLKKADKILILHEG 217
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 111/240 (46%), Gaps = 40/240 (16%)
Query: 437 DRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGES 496
DRK SSDE+ ++ F H+ P + +++ L I G+M+A+ G +
Sbjct: 31 DRKH---SSDEN---------NVSFSHLCL--VGNP---VLKNINLNIEKGEMLAITGST 73
Query: 497 GSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNI- 555
GSGK++++ L+ + G I G ++ SQ + T++ NI
Sbjct: 74 GSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENII 120
Query: 556 --AYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613
+Y + Q I+ + +T++GE G+ LSGGQ+ R+++ARA+
Sbjct: 121 GVSYDE------YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAV 174
Query: 614 VKAPKILLLDEATSALDA-ESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672
K + LLD LD E+V + + ++M +T +++ ++ +R AD I ++ G
Sbjct: 175 YKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 234
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 99/218 (45%), Gaps = 19/218 (8%)
Query: 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT 515
GD F P + +D+ I G+++A+ G +G+GK++++ ++ +P
Sbjct: 36 NGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 516 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXX 575
G I G ++ SQ + T++ NI G
Sbjct: 93 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIAGV--SYDEYRYRSVIKAC 137
Query: 576 XXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESER 635
+ IS + + ++GE GI LSGGQ+ R+++ARA+ K + LLD LD +E+
Sbjct: 138 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 197
Query: 636 -VIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672
+ + + ++M +T +++ ++ ++ AD I ++ G
Sbjct: 198 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 235
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT 515
GD F P + +D+ I G+++A+ G +G+GK++++ ++ +P
Sbjct: 36 NGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 516 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNI---AYGKEGXXXXXXXXXXX 572
G I G ++ SQ + T++ NI +Y +
Sbjct: 93 GKIKHSG-------------RISFCSQNSWIMPGTIKENIIGVSYDE------YRYRSVI 133
Query: 573 XXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAE 632
+ IS + + ++GE GI LSGGQ+ R+++ARA+ K + LLD LD
Sbjct: 134 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 193
Query: 633 SER-VIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672
+E+ + + + ++M +T +++ ++ ++ AD I ++ G
Sbjct: 194 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 97/201 (48%), Gaps = 23/201 (11%)
Query: 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535
+ +D+ I G+++A+ G +G+GK++++ ++ +P G I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 536 QMGLVSQEPVLFNDTVRVNI---AYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIV 592
++ SQ + T++ NI +Y + + IS + + ++
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDE------YRYRSVIKACQLEEDISKFAEKDNIVL 153
Query: 593 GERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESER-VIQDALERVMVGRTTV 651
GE GI LSGGQ+ R+++ARA+ K + LLD LD +E+ + + + ++M +T +
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 652 VIAHRLSTIRDADLIAVVKNG 672
++ ++ ++ AD I ++ G
Sbjct: 214 LVTSKMEHLKKADKILILHEG 234
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 31/215 (14%)
Query: 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEI---QKLQLK 531
+I + + L++ G+ V+++G SGSGKST++ +L P G + L+G E+ + +L
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 532 WLR-QQMGLVSQ------EPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSL 584
LR +++G V Q E + + + GK +S L
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKP---------KKEAKERGEYLLSEL 128
Query: 585 KQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERV 644
G + + +LSGG++QRVAIARA+ P +L DE T LD+ + + + D ++
Sbjct: 129 --GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 645 MVGRTTVV----------IAHRLSTIRDADLIAVV 669
G T++V + HR ++D ++ +
Sbjct: 187 NEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEI 221
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 97/201 (48%), Gaps = 23/201 (11%)
Query: 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535
+ +D+ I G+++A+ G +G+GK++++ ++ +P G I G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 536 QMGLVSQEPVLFNDTVRVNI---AYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIV 592
++ SQ + T++ NI +Y + + IS + + ++
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVSYDE------YRYRSVIKACQLEEDISKFAEKDNIVL 123
Query: 593 GERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESER-VIQDALERVMVGRTTV 651
GE GI LSGGQ+ R+++ARA+ K + LLD LD +E+ + + + ++M +T +
Sbjct: 124 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 183
Query: 652 VIAHRLSTIRDADLIAVVKNG 672
++ ++ ++ AD I ++ G
Sbjct: 184 LVTSKMEHLKKADKILILHEG 204
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 16/204 (7%)
Query: 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538
++ L I G+ + + G +GSGKST++ ++ +P +G + DG ++ + +R+ +G
Sbjct: 27 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG---ERKKGYEIRRNIG 83
Query: 539 LVSQEP--VLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERG 596
+ Q P F + V +A+ + +F+ +D+
Sbjct: 84 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAM--EFVG---LDFDSFKDRVP 138
Query: 597 IQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALER-VMVGRTTVVIAH 655
LSGG+K+RVAIA +V P IL+LDE LD E + + +E+ +G+T ++I+H
Sbjct: 139 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 198
Query: 656 RLSTIRDADLIAVVKNGVIAEKGK 679
+ T+ I V V+ EKGK
Sbjct: 199 DIETV-----INHVDRVVVLEKGK 217
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 16/204 (7%)
Query: 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538
++ L I G+ + + G +GSGKST++ ++ +P +G + DG ++ + +R+ +G
Sbjct: 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG---ERKKGYEIRRNIG 81
Query: 539 LVSQEPV--LFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERG 596
+ Q P F + V +A+ + +F+ +D+
Sbjct: 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAM--EFVG---LDFDSFKDRVP 136
Query: 597 IQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALER-VMVGRTTVVIAH 655
LSGG+K+RVAIA +V P IL+LDE LD E + + +E+ +G+T ++I+H
Sbjct: 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196
Query: 656 RLSTIRDADLIAVVKNGVIAEKGK 679
+ T+ I V V+ EKGK
Sbjct: 197 DIETV-----INHVDRVVVLEKGK 215
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 95/198 (47%), Gaps = 16/198 (8%)
Query: 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535
+ +D+ I G+++A+ G +G+GK++++ ++ +P G I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 536 QMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGER 595
++ SQ + T++ NI +G + IS + + ++GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESER-VIQDALERVMVGRTTVVIA 654
GI LS GQ+ ++++ARA+ K + LLD LD +E+ + + + ++M +T +++
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 655 HRLSTIRDADLIAVVKNG 672
++ ++ AD I ++ G
Sbjct: 218 SKMEHLKKADKILILHEG 235
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 108/216 (50%), Gaps = 18/216 (8%)
Query: 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEI----QKL 528
+V R++ L + G+ + L+G SG GK+T + ++ +P G I + + + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 529 QLKWLRQQMGLVSQEPVLF-NDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQ- 586
+ + + +V Q L+ + TV NIA+ Q + + +
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAF--------PLKLRKVPRQEIDQRVREVAEL 126
Query: 587 -GYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERV- 644
G ++ + +LSGGQ+QRVA+ RA+V+ P++ L+DE S LDA+ ++ L+++
Sbjct: 127 LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 645 -MVGRTTVVIAH-RLSTIRDADLIAVVKNGVIAEKG 678
+G TT+ + H ++ + D IAV+ GV+ + G
Sbjct: 187 RQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 16/215 (7%)
Query: 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ--- 529
DV +DL L I G+ + L+G SG GK+T + + +P G I ++ + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 530 -LKWLRQQMGLVSQEPVLF-NDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQG 587
+ + + V Q L+ + TV NIA+ + L G
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAF----PLKLRKVPKQEIDKRVREVAEXL--G 131
Query: 588 YDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAE---SERVIQDALERV 644
++ + +LSGGQ+QRVA+ RA+++ PK+ L DE S LDA+ R L+R
Sbjct: 132 LTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR- 190
Query: 645 MVGRTTVVIAH-RLSTIRDADLIAVVKNGVIAEKG 678
+G TT+ + H ++ D IAV G + + G
Sbjct: 191 QLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVG 225
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 15/231 (6%)
Query: 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518
++ Q++T + +V + +D+ L I G+ V VG SG GKST++ ++ +G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 519 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TVRVNIAYGKEGXXXXXXXXXXXXXXXX 577
+ E + + +G+V Q L+ +V N+++G
Sbjct: 61 FIG--EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG----LKLAGAKKEVINQRV 114
Query: 578 HQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVI 637
+Q L+ + ++ + LSGGQ+QRVAI R +V P + LLDE S LDA +
Sbjct: 115 NQVAEVLQLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
Query: 638 QDALERV--MVGRTTVVIAH-RLSTIRDADLIAVVKNGVIAEKGKHETLVH 685
+ + R+ +GRT + + H ++ + AD I V+ G +A+ GK L H
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 15/231 (6%)
Query: 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518
++ Q++T + +V + +D+ L I G+ V VG SG GKST++ ++ +G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 519 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TVRVNIAYGKEGXXXXXXXXXXXXXXXX 577
+ E + + +G+V Q L+ +V N+++G
Sbjct: 61 FIG--EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG----LKLAGAKKEVINQRV 114
Query: 578 HQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVI 637
+Q L+ + ++ + LSGGQ+QRVAI R +V P + LLDE S LDA +
Sbjct: 115 NQVAEVLQLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
Query: 638 QDALERV--MVGRTTVVIAH-RLSTIRDADLIAVVKNGVIAEKGKHETLVH 685
+ + R+ +GRT + + H ++ + AD I V+ G +A+ GK L H
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 24/231 (10%)
Query: 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ---KLQLKWLRQ 535
++ + I +G+ ++G SG+GK+T + ++ P TG + D + KL + +
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82
Query: 536 QMGLVSQEPVLF-NDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDT--IV 592
++G+V Q L+ N T NIA+ + + + + D ++
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAF--------PLTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 593 GERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTT 650
+LSGGQ+QRVA+ARA+VK P +LLLDE S LDA + ++ V +G T
Sbjct: 135 NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 651 VVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQTS 700
+V++H + I AD + V+ G + + GK E L Y + V++Q +
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL-------YDNPVSIQVA 238
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 15/231 (6%)
Query: 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518
++ Q++T + +V + +D+ L I G+ V VG SG GKST++ ++ +G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 519 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TVRVNIAYGKEGXXXXXXXXXXXXXXXX 577
+ E + + +G+V Q L+ +V N+++G
Sbjct: 61 FIG--EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG----LKLAGAKKEVINQRV 114
Query: 578 HQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVI 637
+Q L+ + ++ + LSGGQ+QRVAI R +V P + LLD+ S LDA +
Sbjct: 115 NQVAEVLQLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQM 172
Query: 638 QDALERV--MVGRTTVVIAH-RLSTIRDADLIAVVKNGVIAEKGKHETLVH 685
+ + R+ +GRT + + H ++ + AD I V+ G +A+ GK L H
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 116/235 (49%), Gaps = 16/235 (6%)
Query: 449 GTTIENVKG-DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLL 507
G IE +K +++ +++T ++ + L L I G+ + L+G SG GK+T + ++
Sbjct: 2 GNNIEVIKMVEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMI 58
Query: 508 QRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTVRVNIAYGKEGXXXXX 566
+P G I ++ L K + + +V Q ++ + TV NIA+
Sbjct: 59 AGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENIAF-----PLKI 111
Query: 567 XXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEAT 626
++ + L Q + ++ QLSGGQ+QRVA+ARA+V P +LL+DE
Sbjct: 112 KKFPKDEIDKRVRWAAELLQ-IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 170
Query: 627 SALDAESERVIQDALERVM--VGRTTVVIAH-RLSTIRDADLIAVVKNGVIAEKG 678
S LDA+ ++ ++++ + TT+ + H ++ + D IAV+ G + + G
Sbjct: 171 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 225
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 116/235 (49%), Gaps = 16/235 (6%)
Query: 449 GTTIENVKG-DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLL 507
G IE +K +++ +++T ++ + L L I G+ + L+G SG GK+T + ++
Sbjct: 1 GNNIEVIKMVEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMI 57
Query: 508 QRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTVRVNIAYGKEGXXXXX 566
+P G I ++ L K + + +V Q ++ + TV NIA+
Sbjct: 58 AGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENIAF-----PLKI 110
Query: 567 XXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEAT 626
++ + L Q + ++ QLSGGQ+QRVA+ARA+V P +LL+DE
Sbjct: 111 KKFPKDEIDKRVRWAAELLQ-IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169
Query: 627 SALDAESERVIQDALERVM--VGRTTVVIAH-RLSTIRDADLIAVVKNGVIAEKG 678
S LDA+ ++ ++++ + TT+ + H ++ + D IAV+ G + + G
Sbjct: 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 96/201 (47%), Gaps = 23/201 (11%)
Query: 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535
+ +D+ I G+++A+ G +G+GK++++ ++ +P G I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 536 QMGLVSQEPVLFNDTVRVNI---AYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIV 592
++ SQ + T++ NI +Y + + IS + + ++
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVSYDE------YRYRSVIKACQLEEDISKFAEKDNIVL 153
Query: 593 GERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESER-VIQDALERVMVGRTTV 651
GE GI LS GQ+ ++++ARA+ K + LLD LD +E+ + + + ++M +T +
Sbjct: 154 GEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 652 VIAHRLSTIRDADLIAVVKNG 672
++ ++ ++ AD I ++ G
Sbjct: 214 LVTSKMEHLKKADKILILHEG 234
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 24/231 (10%)
Query: 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ---KLQLKWLRQ 535
++ + I +G+ ++G SG+GK+T + ++ P TG + D + KL + +
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82
Query: 536 QMGLVSQEPVLF-NDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDT--IV 592
++G+V Q L+ N T NIA+ + + + + D ++
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAF--------PLTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 593 GERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTT 650
+LSG Q+QRVA+ARA+VK P +LLLDE S LDA + ++ V +G T
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 651 VVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQTS 700
+V++H + I AD + V+ G + + GK E L Y + V++Q +
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL-------YDNPVSIQVA 238
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 12/209 (5%)
Query: 480 LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD----TGHITLDGVEIQKLQLKWLRQ 535
+ L I + A+VGES SGKST+I + + P+ +G + G ++ ++ + LR+
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 536 ----QMGLVSQEPVL-FNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDT 590
++ LV Q N T++V + + + ++ +
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEA 146
Query: 591 IVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESE-RVIQDALERVMVGRT 649
++ +QLSGG KQRV IA A++ P +L+LDE TSALD ++ +IQ E + +
Sbjct: 147 VLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKI 206
Query: 650 TVV-IAHRLSTIRD-ADLIAVVKNGVIAE 676
T++ + H ++ + AD +AV+ G + E
Sbjct: 207 TLIFVTHDIAVAAELADKVAVIYGGNLVE 235
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 31/219 (14%)
Query: 477 FRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG--VEIQKLQLKWLR 534
+ + + I G++ A++G +G GKST+ P +G I D ++ + + LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 535 QQMGLVSQEP--VLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIV 592
+ +G+V Q+P LF+ +V ++++G +++ D +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE---------------DEIRKRVDNAL 128
Query: 593 GERGIQ---------LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALER 643
GI+ LS GQK+RVAIA +V PK+L+LDE T+ LD I L
Sbjct: 129 KRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 644 VM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGK 679
+ +G T ++ H + + D + V+K G + +G
Sbjct: 189 MQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535
+ D+ L I SG+MVA++G +G+GKST++ LL + P G L G + Q K L +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 536 QMGLVSQEPVL-FNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGE 594
++ Q L F +V I G+ ++ ++ Y
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV---- 141
Query: 595 RGIQLSGGQKQRVAIARAMVK------APKILLLDEATSALD 630
LSGG++QRV +AR + + P+ L LDE TSALD
Sbjct: 142 ----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 593 GERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALD----AESERVIQDALERVMVGR 648
G+ + LSGGQ+QRV+IARA+ P +LL DE TSALD E R++Q E G+
Sbjct: 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE---GK 204
Query: 649 TTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETL 683
T VV+ H + R + + + G I E+G E +
Sbjct: 205 TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 36/225 (16%)
Query: 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLR 534
+I + + I G++ L+G +G+GK+T + ++ P +G +T+ G
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN---------- 78
Query: 535 QQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGE 594
V +EP VR I+Y E F +S + +V E
Sbjct: 79 -----VVEEP----HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV-E 128
Query: 595 RGIQLSG--------------GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDA 640
R +++G G +++ IARA++ P++ +LDE TS LD + R ++
Sbjct: 129 RATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 188
Query: 641 LERV-MVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683
L++ G T +V +H + + D IA++ NG I E G E L
Sbjct: 189 LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 480 LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539
+ +++ G + ++G +GSGKST+I+++ F D G + + +I + L G+
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGI 84
Query: 540 VS--QEPVLFND-TVRVNIAYGK--EGXXXXXXXXXXXXXXXXHQFISS---------LK 585
V Q P + TV N+ G+ G + + L
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 144
Query: 586 QGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSAL-DAESERVIQDALERV 644
YD GE LSGGQ + V I RA++ PK++++DE + + + + LE
Sbjct: 145 HLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 645 MVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHE 681
G T ++I HRL + + D + V+ NG I +G+ E
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 480 LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539
+ +++ G + ++G +GSGKST+I+++ F D G + + +I + L G+
Sbjct: 26 VSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGI 84
Query: 540 VS--QEPVLFND-TVRVNIAYGK--EGXXXXXXXXXXXXXXXXHQFISS---------LK 585
V Q P + TV N+ G+ G + + L
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 144
Query: 586 QGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSAL-DAESERVIQDALERV 644
YD GE LSGGQ + V I RA++ PK++++DE + + + + LE
Sbjct: 145 HLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 645 MVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHE 681
G T ++I HRL + + D + V+ NG I +G+ E
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 480 LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539
+ +++ G + ++G +GSGKST+I+++ F D G + + +I + L G+
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGI 84
Query: 540 VS--QEPVLFND-TVRVNIAYGK--EGXXXXXXXXXXXXXXXXHQFISS---------LK 585
V Q P + TV N+ G+ G + + L
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 144
Query: 586 QGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSAL-DAESERVIQDALERV 644
YD GE LSGGQ + V I RA++ PK++++D+ + + + + LE
Sbjct: 145 HLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 645 MVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHE 681
G T ++I HRL + + D + V+ NG I +G+ E
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 25/236 (10%)
Query: 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518
+E Q + Y A + + + L +P G++V L+G +G+GK+T +S + G I
Sbjct: 7 LEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 519 TLDGVEIQKLQLKWL-RQQMGLVSQEPVLFND-TVRVNIAYG------KEGXXXXXXXXX 570
+G +I + R + LV + +F + TV N+ G KEG
Sbjct: 64 IFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDL---- 119
Query: 571 XXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALD 630
++I SL + + G LSGG++Q +AI RA+ PK+L DE + L
Sbjct: 120 --------EWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLA 171
Query: 631 AESERVIQDALERVMVGRTTVVIAHR--LSTIRDADLIAVVKNGVIAEKGKHETLV 684
+ + ++++ TT+++ + L ++ A V++ G I +GK L+
Sbjct: 172 PILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 23/205 (11%)
Query: 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535
+F+ L + G ++A++G++G GKST++ LL + P G I + Q
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQ 66
Query: 536 QMGLVSQ---EPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIV 592
+G V Q P F +V + G+ Q + L + +
Sbjct: 67 SIGFVPQFFSSP--FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH--LA 122
Query: 593 GERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVV 652
LSGGQ+Q + IARA+ K++LLDE TSALD ++ ++ L + + V
Sbjct: 123 KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTV 182
Query: 653 IAHRLSTIRDADLIAVVKNGVIAEK 677
+ +T + ++A+ ++ K
Sbjct: 183 V---FTTHQPNQVVAIANKTLLLNK 204
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 24/243 (9%)
Query: 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLL--QRFYDPDTGHITLDGVEIQKLQL 530
D I R L L + G++ A++G +GSGKST+ + L + Y+ G + G ++ L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 531 KWLRQQMGL------------VSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXH 578
+ R G+ VS + L V G+E
Sbjct: 92 ED-RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE------TLDRFDFQDLME 144
Query: 579 QFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQ 638
+ I+ LK D + + SGG+K+R I + V P++ +LDE+ S LD ++ +V+
Sbjct: 145 EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVA 204
Query: 639 DALERVMVGRTTVVIAHRLSTIRD---ADLIAVVKNGVIAEKGKHETLVHVKDGIYASLV 695
D + + G+ + +I I D D + V+ G I + G + +++ Y L
Sbjct: 205 DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLT 264
Query: 696 ALQ 698
Q
Sbjct: 265 EQQ 267
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 18/240 (7%)
Query: 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLL--QRFYDPDTGHITLDGVEIQKLQL 530
D I R L L + G++ A++G +GSGKST+ + L + Y+ G + G ++ L
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 531 K-WLRQQMGLVSQEPV--------LFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFI 581
+ + + + Q PV F T +N G + I
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTA-LNAVRSYRGQETLDRFDFQDLM---EEKI 128
Query: 582 SSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDAL 641
+ LK D + + SGG+K+R I + V P++ +LDE+ S LD ++ +V+ D +
Sbjct: 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 188
Query: 642 ERVMVGRTTVVIAHRLSTIRD---ADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQ 698
+ G+ + +I I D D + V+ G I + G + +++ Y L Q
Sbjct: 189 NSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 248
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 47/205 (22%)
Query: 466 FKYPARPDVQIFRDLCLAIPSGK-----MVALVGESGSGKSTVISLLQRFYDPDTGHITL 520
F YP+ Q D L + G+ ++ ++GE+G+GK+T+I LL PD G
Sbjct: 354 FSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ--- 408
Query: 521 DGVEIQKLQLKWLRQQM-----GLVSQEPVLFNDTVR---VNIAYGKEGXXXXXXXXXXX 572
+I KL + Q++ G V Q LF +R +N + +
Sbjct: 409 ---DIPKLNVSMKPQKIAPKFPGTVRQ---LFFKKIRGQFLNPQFQTD------------ 450
Query: 573 XXXXXHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAE 632
+ L+ D I+ + LSGG+ QRVAI A+ I L+DE ++ LD+E
Sbjct: 451 -------VVKPLR--IDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501
Query: 633 SERVIQDALERVMV--GRTTVVIAH 655
+ + R ++ +T ++ H
Sbjct: 502 QRIICSKVIRRFILHNKKTAFIVEH 526
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 26/224 (11%)
Query: 452 IENVKGDIEFQHITFKYPARPDVQIFRDLCLAIP-SGKMVALVGESGSGKSTVISLLQ-- 508
I N+ ++E H+T +Y A F+ L P G+++ LVG +G GKST + +L
Sbjct: 72 IINLPTNLE-AHVTHRYSANS----FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126
Query: 509 ------RFYDPDTGHITLD---GVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGK 559
RF DP + G E+Q K L + + + + N + K
Sbjct: 127 QKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQK 186
Query: 560 EGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQ-LSGGQKQRVAIARAMVKAPK 618
G + I L+ V +R I+ LSGG+ QR AI + V+
Sbjct: 187 VGELLKLRMEKSPEDVKRYIKILQLEN-----VLKRDIEKLSGGELQRFAIGMSCVQEAD 241
Query: 619 ILLLDEATSALDAESERVIQDALERVMVGRTTVVIA--HRLSTI 660
+ + DE +S LD + +R+ + R ++ T VI H LS +
Sbjct: 242 VYMFDEPSSYLDVK-QRLNAAQIIRSLLAPTKYVICVEHDLSVL 284
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 37/204 (18%)
Query: 484 IPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQE 543
I G+++ +VG +G GK+T + +L +P G + D K Q +++ + E
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVYE 436
Query: 544 PVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLK--QGYDTIVGERGIQLSG 601
+ D+ ++N + K + + L YD V + LSG
Sbjct: 437 LLSKIDSSKLNSNFYKT------------------ELLKPLGIIDLYDRNVED----LSG 474
Query: 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVG--RTTVVIAHRLST 659
G+ QRVAIA +++ I LLDE ++ LD E + A+ +M +T +V+ H
Sbjct: 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH---- 530
Query: 660 IRDADLIAVVKNGVI---AEKGKH 680
D +I V + +I E G+H
Sbjct: 531 --DVLMIDYVSDRLIVFEGEPGRH 552
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHR 656
QLSGG+ QRVAIA A+++ DE +S LD + + R+ G+ +V+ H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 657 LSTIRD-ADLIAVV 669
L+ + +D+I VV
Sbjct: 288 LAVLDYLSDVIHVV 301
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 37/204 (18%)
Query: 484 IPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQE 543
I G+++ +VG +G GK+T + +L +P G + D K Q +++ + E
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVYE 422
Query: 544 PVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLK--QGYDTIVGERGIQLSG 601
+ D+ ++N + K + + L YD V + LSG
Sbjct: 423 LLSKIDSSKLNSNFYKT------------------ELLKPLGIIDLYDRNVED----LSG 460
Query: 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVG--RTTVVIAHRLST 659
G+ QRVAIA +++ I LLDE ++ LD E + A+ +M +T +V+ H
Sbjct: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH---- 516
Query: 660 IRDADLIAVVKNGVI---AEKGKH 680
D +I V + +I E G+H
Sbjct: 517 --DVLMIDYVSDRLIVFEGEPGRH 538
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHR 656
QLSGG+ QRVAIA A+++ DE +S LD + + R+ G+ +V+ H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 657 LSTIRD-ADLIAVV 669
L+ + +D+I VV
Sbjct: 274 LAVLDYLSDVIHVV 287
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 17/165 (10%)
Query: 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL--QLKWL 533
I + + I G L G +G+GK+T++++L + +G + L G K+ + +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 534 RQQMGLVSQEPV-LFNDTVRV--NIAYGKEGXXXXXXXXXXXXXXXXHQFI-----SSLK 585
RQ +G VS + F + RV + G HQ + S+
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKA 155
Query: 586 QGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALD 630
Q Y +G LS G+KQRV IARA+ P++L+LDE + LD
Sbjct: 156 QQY---IG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 20/232 (8%)
Query: 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLL--QRFYDPDTGHITLDGVEIQKLQL-KW 532
I + + L +P G++ AL+G +G+GKST+ +L Y + G I LDG I +L +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 533 LRQQMGLVSQEPVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQG----- 587
R+ + L Q PV + V IA +F + +K+
Sbjct: 78 ARKGLFLAFQYPV---EVPGVTIA----NFLRLALQAKLGREVGVAEFWTKVKKALELLD 130
Query: 588 YDTIVGERGIQ--LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQ---DALE 642
+D R + SGG+K+R I + +V P +LDE S LD ++ +V+ +A+
Sbjct: 131 WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 643 RVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASL 694
G + R+ D + V+ +G + G E + ++ Y L
Sbjct: 191 GPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEWL 242
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 486 SGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPV 545
+G+ V ++G +GSGK+T++ + P +G+I ++G+E++K++ ++R L P
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIRYSTNL----PE 82
Query: 546 LFNDTVRVN-IAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTIVGERGIQLSGGQK 604
+ V VN I Y E + + +LK G + I+ + +LS GQ
Sbjct: 83 AYEIGVTVNDIVYLYE-------ELKGLDRDLFLEMLKALKLG-EEILRRKLYKLSAGQS 134
Query: 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTI 660
V + A+ P+I+ LDE +DA VI ++ G+ +++ H L +
Sbjct: 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILVTHELDML 188
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 579 QFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK---APKILLLDEATSALDAESER 635
Q + + GY +G+ LSGG+ QR+ +A + K + +LDE T L E R
Sbjct: 787 QVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVR 845
Query: 636 VIQDALERVM-VGRTTVVIAHRLSTIRDADLI 666
+ + L R++ G T +VI H L I++AD I
Sbjct: 846 KLVEVLHRLVDRGNTVIVIEHNLDVIKNADHI 877
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 599 LSGGQKQRVAIARAMVKAPK--ILLLDEATSALDA-ESERVIQDALERVMVGRTTVVIAH 655
LSGG+ QR+ +A + I +LDE T L ++ER+I+ + +G T +V+ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 656 RLSTIRDADLI 666
IR+AD I
Sbjct: 525 DEEVIRNADHI 535
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Query: 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGR--TTVVIAHR 656
LSGG+ Q++ IA + K + +LD+ +S LD E ++ A++RV R T +I H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 657 LSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQTSVSS 703
LS D IA + +I KG+ E K G+ S V L+T ++
Sbjct: 446 LSI---HDYIA---DRIIVFKGEPE-----KAGLATSPVTLKTGMNE 481
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLS 658
LSGG QR+ +A ++++ + + D+ +S LD + A+ ++ + +V+ H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198
Query: 659 TIRD-ADLIAVV 669
+ DLI ++
Sbjct: 199 VLDYLTDLIHII 210
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 484 IPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQE 543
I G+++ +VG +G GK+T + L +P G I D K Q +++ E
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ--YIKADYEGTVYE 366
Query: 544 PVLFNDTVRVNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLK--QGYDTIVGERGIQLSG 601
+ D ++N + K + + L YD V E LSG
Sbjct: 367 LLSKIDASKLNSNFYK------------------TELLKPLGIIDLYDREVNE----LSG 404
Query: 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVG--RTTVVIAH 655
G+ QRVAIA +++ I LLDE ++ LD E + A+ + +T +V+ H
Sbjct: 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 594 ERGIQ-LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTV 651
ER IQ LSGG+ QRVAIA A+++ DE +S LD A+ R+ G++ +
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 652 VIAHRLSTIRD-ADLIAVV 669
V+ H L+ + +D+I VV
Sbjct: 213 VVEHDLAVLDYLSDIIHVV 231
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW 532
D + + + I G +V G +G GK+T++ + + P G I +GV I K++ K
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 533 LRQQMGLVSQEPVLFNDTVR-VNIAYGKEGXXXXXXXXXXXXXXXXHQFISSLKQGYDTI 591
++ + D ++ V YG + ++ + +L+
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLYGVK--------------VNKNEIMDALESVEVLD 126
Query: 592 VGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTV 651
+ ++ +LS G +RV +A ++ +I +LD+ A+D +S+ + ++ ++ + V
Sbjct: 127 LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 652 VIAHR 656
+I+ R
Sbjct: 187 IISSR 191
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 592 VGERGIQLSGGQKQRVAIARAMVKAPK---ILLLDEATSALD-AESERVIQDALERVMVG 647
+G+ +LSGG+ QR+ +A + ++ + + +LDE T+ L A+ ER+ + ++ V G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 648 RTTVVIAHRLSTIRDADLIAVVKNGVIAEKGK 679
T + + H++ + +D + + G + G+
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGR 815
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 592 VGERGIQLSGGQKQRVAIARAMVKAPK---ILLLDEATSALDAESERVIQDALERVM-VG 647
+G+ LSGG+ QRV +A + + + +LDE T+ L + + D L R++ G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 648 RTTVVIAHRLSTIRDADLIAVV------KNGVIAEKGKHETLVHVKD 688
T +VI H L I+ AD I + + G I G E + VK+
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 945
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 477 FRDLCLAIPSGKMVALVGESGSGKSTVIS 505
+++ + IP G VA+ G SGSGKST+++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 477 FRDLCLAIPSGKMVALVGESGSGKSTV 503
+++ + IP GK+V L G SGSGKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 592 VGERGIQLSGGQKQRVAIARAMVKAPK---ILLLDEATSALDAESERVIQDALERVM-VG 647
+G+ LSGG+ QRV +A + + + +LDE T+ L + + D L R++ G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 648 RTTVVIAHRLSTIRDADLIAVV------KNGVIAEKGKHETLVHVKD 688
T +VI H L I+ AD I + + G I G E + VK+
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 945
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 477 FRDLCLAIPSGKMVALVGESGSGKSTVIS 505
+++ + IP G VA+ G SGSGKST+++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 477 FRDLCLAIPSGKMVALVGESGSGKSTV 503
+++ + IP GK+V L G SGSGKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 592 VGERGIQLSGGQKQRVAIARAMVKAPK---ILLLDEATSALDAESERVIQDALERVM-VG 647
+G+ LSGG+ QRV +A + + + +LDE T+ L + + D L R++ G
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 648 RTTVVIAHRLSTIRDADLIAVV------KNGVIAEKGKHETLVHVKD 688
T +VI H L I+ AD I + + G I G E + VK+
Sbjct: 597 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 643
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 477 FRDLCLAIPSGKMVALVGESGSGKSTVIS 505
+++ + IP G VA+ G SGSGKST+++
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 477 FRDLCLAIPSGKMVALVGESGSGKSTV 503
+++ + IP GK+V L G SGSGKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAH 655
LSGG K ++A+ARA+++ ILLLDE T+ LD + + + L G T++ I+H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 603
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLS 658
LSGGQK ++ +A + P +++LDE T+ LD +S + AL+ G ++I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 659 TIRD-ADLIAVVKNGVIAEKGKH 680
++ + + VK+G + G +
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHN 982
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT 515
K ++ ++ F+YP QI D+ +A++G +G+GKST+I++L P +
Sbjct: 669 KAIVKVTNMEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Query: 516 GHI 518
G +
Sbjct: 728 GEV 730
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAH 655
LSGG K ++A+ARA+++ ILLLDE T+ LD + + + L G T++ I+H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 603
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLS 658
LSGGQK ++ +A + P +++LDE T+ LD +S + AL+ G ++I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 659 TIRD-ADLIAVVKNGVIAEKGKH 680
++ + + VK+G G +
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSGHN 982
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT 515
K ++ + F+YP QI D+ +A++G +G+GKST+I++L P +
Sbjct: 669 KAIVKVTNXEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Query: 516 GHI 518
G +
Sbjct: 728 GEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAH 655
LSGG K ++A+ARA+++ ILLLDE T+ LD + + + L G T++ I+H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 597
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLS 658
LSGGQK ++ +A + P +++LDE T+ LD +S + AL+ G ++I H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 659 TIRD-ADLIAVVKNGVIAEKGKH 680
++ + + VK+G G +
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSGHN 976
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT 515
K ++ + F+YP QI D+ +A++G +G+GKST+I++L P +
Sbjct: 663 KAIVKVTNXEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 721
Query: 516 GHI 518
G +
Sbjct: 722 GEV 724
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 578 HQFISSLKQ---GYDTIVGERGIQLSGGQKQRVAIARAMVK---APKILLLDEATSALDA 631
H+++ +L GY +G+ LSGG+ QRV +A + K + +LDE T+ L
Sbjct: 841 HRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHF 899
Query: 632 ESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLI 666
+ R + + + ++ G T +VI H L I+ +D I
Sbjct: 900 DDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWI 935
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 17/109 (15%)
Query: 589 DTIVGERGIQLSGGQKQRVAIARAMVK-------APKILLLDEATSALDAESERVIQDAL 641
D +G QLSGG+ QRV +A +++ A ++LLLD+ ++LD Q AL
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSAL 172
Query: 642 ERVMV-----GRTTVVIAHRLS-TIRDADLIAVVKNGVIAEKGKHETLV 684
++++ G V+ +H L+ T+R A ++K G + G+ E ++
Sbjct: 173 DKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 17/109 (15%)
Query: 589 DTIVGERGIQLSGGQKQRVAIARAMVK-------APKILLLDEATSALDAESERVIQDAL 641
D +G QLSGG+ QRV +A +++ A ++LLLDE ++LD Q AL
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSAL 172
Query: 642 ERVMV-----GRTTVVIAHRLS-TIRDADLIAVVKNGVIAEKGKHETLV 684
++++ G V +H L+ T+R A ++K G G+ E ++
Sbjct: 173 DKILSALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 17/109 (15%)
Query: 589 DTIVGERGIQLSGGQKQRVAIARAMVK-------APKILLLDEATSALDAESERVIQDAL 641
D +G QLSGG+ QRV +A +++ A ++LLLDE ++LD Q AL
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSAL 172
Query: 642 ERVMV-----GRTTVVIAHRLS-TIRDADLIAVVKNGVIAEKGKHETLV 684
++++ G V +H L+ T+R A ++K G G+ E ++
Sbjct: 173 DKILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 17/109 (15%)
Query: 589 DTIVGERGIQLSGGQKQRVAIARAMVK-------APKILLLDEATSALDAESERVIQDAL 641
D +G QLSGG+ QRV +A +++ A ++LLLD+ +LD Q AL
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSAL 172
Query: 642 ERVMV-----GRTTVVIAHRLS-TIRDADLIAVVKNGVIAEKGKHETLV 684
++++ G V+ +H L+ T+R A ++K G + G+ E ++
Sbjct: 173 DKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 480 LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL-DGVEIQKLQLKWL 533
L LAI +VGE+ SGK+T ++ + F PD +++ D EI+ W+
Sbjct: 253 LWLAIEHKFSAIVVGETASGKTTTLNAIXXFIPPDAKVVSIEDTREIKLYHENWI 307
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 599 LSGGQKQRVAIARAM----VKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIA 654
LSGG++ AIA V+ +LDE +ALD + L++ +VI
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 655 HRLSTIRDADLI 666
HR T+ +AD++
Sbjct: 389 HRKGTMEEADVL 400
>pdb|4GP7|A Chain A, Polynucleotide Kinase
pdb|4GP7|B Chain B, Polynucleotide Kinase
Length = 171
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 482 LAIPSGKMVALVGESGSGKST 502
L IP +V L+G SGSGKST
Sbjct: 4 LTIPELSLVVLIGSSGSGKST 24
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 599 LSGGQKQ------RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVV 652
LSGG++ R+A++ + +L+LDE T LD E R + +ER + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 653 IAHRLSTIRDA 663
+ ++DA
Sbjct: 309 LVSHDEELKDA 319
>pdb|4GP6|A Chain A, Polynucleotide Kinase
pdb|4GP6|B Chain B, Polynucleotide Kinase
Length = 171
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 482 LAIPSGKMVALVGESGSGKST 502
L IP +V L+G SGSGKST
Sbjct: 4 LTIPELSLVVLIGSSGSGKST 24
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 599 LSGGQKQ------RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVV 652
LSGG++ R+A++ + +L+LDE T LD E R + +ER + V+
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 328
Query: 653 IAHRLSTIRDA 663
+ ++DA
Sbjct: 329 LVSHDEELKDA 339
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 599 LSGGQKQ------RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVV 652
LSGG++ R+A++ + +L+LDE T LD E R + +ER + V+
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 653 IAHRLSTIRDA 663
+ ++DA
Sbjct: 118 LVSHDEELKDA 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,046,237
Number of Sequences: 62578
Number of extensions: 620081
Number of successful extensions: 1851
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1585
Number of HSP's gapped (non-prelim): 196
length of query: 703
length of database: 14,973,337
effective HSP length: 106
effective length of query: 597
effective length of database: 8,340,069
effective search space: 4979021193
effective search space used: 4979021193
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)