Query 005314
Match_columns 703
No_of_seqs 245 out of 2729
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 21:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055 Multidrug/pheromone ex 100.0 4E-142 1E-146 1236.4 74.1 579 119-700 648-1227(1228)
2 KOG0058 Peptide exporter, ABC 100.0 1E-128 2E-133 1070.3 67.5 577 119-701 131-707 (716)
3 KOG0055 Multidrug/pheromone ex 100.0 5E-115 1E-119 1010.4 55.4 576 120-699 12-589 (1228)
4 PTZ00265 multidrug resistance 100.0 1E-109 3E-114 1028.1 79.3 576 122-699 812-1466(1466)
5 COG2274 SunT ABC-type bacterio 100.0 2E-108 4E-113 945.3 72.0 573 118-699 137-709 (709)
6 PRK11174 cysteine/glutathione 100.0 2E-102 5E-107 901.4 75.0 570 121-700 8-586 (588)
7 COG1132 MdlB ABC-type multidru 100.0 5E-101 1E-105 886.2 74.3 564 122-700 3-566 (567)
8 TIGR00958 3a01208 Conjugate Tr 100.0 2.1E-99 4E-104 890.8 73.0 567 119-695 145-711 (711)
9 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.3E-98 5E-103 881.4 76.1 564 121-698 121-685 (686)
10 TIGR01193 bacteriocin_ABC ABC- 100.0 4.5E-98 1E-102 882.0 73.9 566 121-696 142-707 (708)
11 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.3E-97 3E-102 878.7 73.8 565 121-695 140-709 (710)
12 PRK11160 cysteine/glutathione 100.0 8.4E-97 2E-101 850.1 74.6 566 123-697 4-573 (574)
13 PRK11176 lipid transporter ATP 100.0 2.9E-96 6E-101 849.6 74.4 569 123-700 13-581 (582)
14 TIGR03375 type_I_sec_LssB type 100.0 2.2E-96 5E-101 865.7 74.2 557 121-686 133-689 (694)
15 COG4988 CydD ABC-type transpor 100.0 8.4E-96 2E-100 795.7 69.1 554 138-700 3-557 (559)
16 PRK10790 putative multidrug tr 100.0 5.4E-95 1.2E-99 840.1 75.3 567 122-700 10-577 (592)
17 KOG0056 Heavy metal exporter H 100.0 4.1E-99 9E-104 790.0 36.2 548 146-700 226-776 (790)
18 TIGR01846 type_I_sec_HlyB type 100.0 5.7E-95 1.2E-99 853.3 75.3 569 121-699 125-693 (694)
19 KOG0057 Mitochondrial Fe/S clu 100.0 5.6E-95 1.2E-99 776.5 58.8 559 132-700 26-588 (591)
20 TIGR02203 MsbA_lipidA lipid A 100.0 1.3E-93 2.8E-98 826.1 74.2 567 124-699 3-569 (571)
21 PTZ00265 multidrug resistance 100.0 2.5E-93 5.3E-98 883.5 73.9 572 119-699 43-729 (1466)
22 PRK13657 cyclic beta-1,2-gluca 100.0 2.2E-92 4.7E-97 817.4 76.8 566 122-699 6-571 (588)
23 TIGR02868 CydC thiol reductant 100.0 6.9E-93 1.5E-97 812.3 69.0 526 124-657 2-529 (529)
24 TIGR01192 chvA glucan exporter 100.0 7.6E-92 1.6E-96 810.2 76.4 565 123-699 7-571 (585)
25 TIGR02204 MsbA_rel ABC transpo 100.0 1.5E-91 3.3E-96 809.5 74.5 571 122-698 5-575 (576)
26 PRK10789 putative multidrug tr 100.0 1.5E-91 3.3E-96 806.2 71.9 544 148-700 8-552 (569)
27 TIGR00957 MRP_assoc_pro multi 100.0 3E-91 6.4E-96 873.5 74.4 511 178-697 1006-1519(1522)
28 PLN03130 ABC transporter C fam 100.0 7.6E-91 1.6E-95 868.7 74.9 514 177-699 953-1475(1622)
29 COG5265 ATM1 ABC-type transpor 100.0 4.6E-93 9.9E-98 738.9 39.8 492 198-696 3-496 (497)
30 COG4987 CydC ABC-type transpor 100.0 9.3E-90 2E-94 736.0 64.2 554 133-697 14-572 (573)
31 TIGR02857 CydD thiol reductant 100.0 1.8E-89 3.9E-94 784.1 70.5 528 134-669 2-529 (529)
32 PLN03232 ABC transporter C fam 100.0 8.5E-90 1.8E-94 859.3 73.6 515 177-700 950-1473(1495)
33 PTZ00243 ABC transporter; Prov 100.0 1.3E-88 2.9E-93 847.5 75.2 517 179-700 1000-1548(1560)
34 TIGR01842 type_I_sec_PrtD type 100.0 1.3E-87 2.9E-92 770.3 72.7 539 131-685 2-542 (544)
35 TIGR01194 cyc_pep_trnsptr cycl 100.0 5.6E-83 1.2E-87 732.6 66.5 535 121-677 3-551 (555)
36 TIGR01271 CFTR_protein cystic 100.0 9.6E-82 2.1E-86 785.6 72.6 507 181-699 929-1453(1490)
37 KOG0054 Multidrug resistance-a 100.0 2.1E-81 4.5E-86 746.1 61.9 517 175-697 856-1374(1381)
38 PLN03232 ABC transporter C fam 100.0 3E-80 6.6E-85 773.4 71.1 539 133-699 299-841 (1495)
39 COG4618 ArpD ABC-type protease 100.0 3.3E-81 7.2E-86 663.9 52.1 539 134-686 22-561 (580)
40 PLN03130 ABC transporter C fam 100.0 1.1E-79 2.4E-84 768.5 72.2 541 131-698 297-840 (1622)
41 PRK10522 multidrug transporter 100.0 4.4E-76 9.6E-81 675.2 65.3 529 127-686 5-540 (547)
42 KOG0054 Multidrug resistance-a 100.0 3.5E-74 7.5E-79 684.4 63.1 545 131-697 197-742 (1381)
43 TIGR00957 MRP_assoc_pro multi 100.0 1.6E-72 3.4E-77 705.0 73.2 543 133-698 315-862 (1522)
44 TIGR00954 3a01203 Peroxysomal 100.0 7.8E-72 1.7E-76 649.6 62.9 528 123-670 79-652 (659)
45 TIGR01271 CFTR_protein cystic 100.0 1.7E-68 3.7E-73 666.7 72.0 535 133-696 78-646 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 5.7E-67 1.2E-71 653.4 72.0 547 130-697 239-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.2E-56 4.8E-61 466.4 27.6 237 457-698 1-237 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 6.7E-53 1.5E-57 406.4 22.9 218 458-690 2-230 (240)
49 PRK14257 phosphate ABC transpo 100.0 3.3E-52 7.2E-57 445.8 27.6 223 456-686 78-314 (329)
50 cd03252 ABCC_Hemolysin The ABC 100.0 1.7E-51 3.6E-56 422.8 28.0 236 459-697 1-236 (237)
51 cd03288 ABCC_SUR2 The SUR doma 100.0 5.7E-51 1.2E-55 423.8 28.6 242 454-698 15-256 (257)
52 COG1135 AbcC ABC-type metal io 100.0 2.8E-51 6.1E-56 414.3 22.3 218 459-687 2-233 (339)
53 COG1117 PstB ABC-type phosphat 100.0 3.4E-51 7.3E-56 392.7 18.8 221 457-687 6-239 (253)
54 cd03253 ABCC_ATM1_transporter 100.0 7.3E-50 1.6E-54 410.4 27.8 235 459-697 1-235 (236)
55 COG1125 OpuBA ABC-type proline 100.0 6.1E-51 1.3E-55 400.0 18.4 219 459-692 2-232 (309)
56 cd03251 ABCC_MsbA MsbA is an e 100.0 1E-49 2.2E-54 408.8 26.4 233 459-694 1-233 (234)
57 cd03254 ABCC_Glucan_exporter_l 100.0 1.6E-49 3.5E-54 406.0 27.4 227 457-686 1-227 (229)
58 COG4615 PvdE ABC-type sideroph 100.0 7.8E-47 1.7E-51 389.4 47.0 518 126-678 4-530 (546)
59 cd03244 ABCC_MRP_domain2 Domai 100.0 2.4E-49 5.2E-54 402.5 26.6 220 457-679 1-220 (221)
60 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.4E-49 7.4E-54 405.9 27.5 236 459-696 1-236 (238)
61 TIGR02314 ABC_MetN D-methionin 100.0 4.9E-49 1.1E-53 422.2 25.1 227 459-696 2-242 (343)
62 PRK13631 cbiO cobalt transport 100.0 1.2E-48 2.5E-53 417.2 25.5 221 458-685 21-265 (320)
63 cd03245 ABCC_bacteriocin_expor 100.0 2.5E-48 5.4E-53 394.7 26.7 220 457-678 1-220 (220)
64 COG4178 ABC-type uncharacteriz 100.0 1.7E-44 3.8E-49 400.4 55.4 470 180-670 89-587 (604)
65 COG3839 MalK ABC-type sugar tr 100.0 2.9E-48 6.2E-53 407.5 23.1 218 458-691 3-229 (338)
66 COG1120 FepC ABC-type cobalami 100.0 2.2E-48 4.7E-53 394.0 21.2 214 458-685 2-228 (258)
67 cd03261 ABC_Org_Solvent_Resist 100.0 3.8E-48 8.3E-53 397.4 22.9 219 459-692 1-232 (235)
68 cd03248 ABCC_TAP TAP, the Tran 100.0 1E-47 2.2E-52 391.9 24.6 219 455-674 8-226 (226)
69 COG3840 ThiQ ABC-type thiamine 100.0 7.9E-48 1.7E-52 360.1 20.1 210 459-686 2-220 (231)
70 PRK14269 phosphate ABC transpo 100.0 2.3E-47 4.9E-52 394.3 25.3 219 458-686 2-231 (246)
71 cd03260 ABC_PstB_phosphate_tra 100.0 8.3E-48 1.8E-52 392.8 21.6 213 459-683 1-227 (227)
72 COG1136 SalX ABC-type antimicr 100.0 2E-47 4.2E-52 379.8 23.4 208 459-676 2-222 (226)
73 COG1116 TauB ABC-type nitrate/ 100.0 1.1E-47 2.4E-52 381.5 20.6 199 458-675 3-212 (248)
74 COG1122 CbiO ABC-type cobalt t 100.0 1.7E-47 3.7E-52 387.4 22.2 216 458-686 3-229 (235)
75 COG3842 PotA ABC-type spermidi 100.0 6.8E-48 1.5E-52 406.8 19.9 220 457-692 4-233 (352)
76 PRK13650 cbiO cobalt transport 100.0 3.4E-47 7.3E-52 399.8 24.4 218 458-686 4-230 (279)
77 COG1127 Ttg2A ABC-type transpo 100.0 2.4E-47 5.2E-52 373.5 21.0 226 457-696 7-246 (263)
78 PRK14273 phosphate ABC transpo 100.0 5.5E-47 1.2E-51 393.4 24.8 227 457-693 6-246 (254)
79 COG1124 DppF ABC-type dipeptid 100.0 5.9E-47 1.3E-51 372.7 22.0 227 458-694 3-240 (252)
80 PRK11650 ugpC glycerol-3-phosp 100.0 7E-47 1.5E-51 408.7 24.6 220 458-692 3-231 (356)
81 TIGR00972 3a0107s01c2 phosphat 100.0 8.6E-47 1.9E-51 390.3 24.1 223 459-691 2-238 (247)
82 PRK11153 metN DL-methionine tr 100.0 8.3E-47 1.8E-51 407.3 24.8 226 459-695 2-241 (343)
83 PRK11432 fbpC ferric transport 100.0 6.6E-47 1.4E-51 407.7 23.8 219 457-691 5-232 (351)
84 cd03219 ABC_Mj1267_LivG_branch 100.0 8.7E-47 1.9E-51 387.5 23.3 221 459-685 1-232 (236)
85 PRK14242 phosphate transporter 100.0 1.2E-46 2.6E-51 390.6 24.4 219 458-686 6-238 (253)
86 PRK14250 phosphate ABC transpo 100.0 2.5E-46 5.5E-51 385.3 26.3 225 458-695 3-231 (241)
87 TIGR01186 proV glycine betaine 100.0 5.6E-47 1.2E-51 408.5 21.9 210 473-693 5-227 (363)
88 PRK13647 cbiO cobalt transport 100.0 1.4E-46 3E-51 394.2 24.0 214 458-684 4-226 (274)
89 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.4E-46 7.3E-51 375.6 25.5 202 457-679 5-206 (207)
90 PRK10744 pstB phosphate transp 100.0 3.6E-46 7.9E-51 388.5 25.9 226 456-691 11-250 (260)
91 cd03263 ABC_subfamily_A The AB 100.0 2.1E-46 4.6E-51 380.6 23.5 212 459-683 1-219 (220)
92 TIGR00960 3a0501s02 Type II (G 100.0 1E-46 2.2E-51 381.8 21.1 204 459-674 2-216 (216)
93 cd03256 ABC_PhnC_transporter A 100.0 1.9E-46 4E-51 386.3 23.4 213 459-684 1-233 (241)
94 PRK13635 cbiO cobalt transport 100.0 2.5E-46 5.4E-51 393.1 24.3 217 458-686 5-230 (279)
95 PRK14235 phosphate transporter 100.0 3.4E-46 7.4E-51 390.0 24.9 224 456-689 17-255 (267)
96 cd03296 ABC_CysA_sulfate_impor 100.0 2.6E-46 5.7E-51 384.8 23.7 212 459-686 3-227 (239)
97 cd03224 ABC_TM1139_LivF_branch 100.0 3.1E-46 6.7E-51 379.9 23.9 217 459-685 1-221 (222)
98 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.6E-46 3.6E-51 392.7 22.5 221 460-694 26-259 (269)
99 PRK13637 cbiO cobalt transport 100.0 2.8E-46 6.2E-51 394.3 24.4 218 459-685 3-234 (287)
100 TIGR03265 PhnT2 putative 2-ami 100.0 2.5E-46 5.4E-51 403.9 24.4 218 458-691 4-230 (353)
101 PRK14267 phosphate ABC transpo 100.0 2.7E-46 5.9E-51 388.0 23.5 227 458-694 4-246 (253)
102 cd03258 ABC_MetN_methionine_tr 100.0 3.1E-46 6.6E-51 382.8 23.4 216 459-685 2-230 (233)
103 PRK13642 cbiO cobalt transport 100.0 4.6E-46 9.9E-51 391.0 25.1 218 458-686 4-230 (277)
104 COG3638 ABC-type phosphate/pho 100.0 1.7E-46 3.7E-51 366.5 20.0 214 458-684 3-236 (258)
105 PRK13646 cbiO cobalt transport 100.0 5.6E-46 1.2E-50 392.0 25.5 221 459-686 3-236 (286)
106 PRK13643 cbiO cobalt transport 100.0 4.1E-46 8.8E-51 393.3 24.4 217 459-685 2-233 (288)
107 TIGR02315 ABC_phnC phosphonate 100.0 4.3E-46 9.2E-51 384.1 23.6 213 459-684 2-234 (243)
108 cd03250 ABCC_MRP_domain1 Domai 100.0 5.1E-46 1.1E-50 373.4 23.4 200 459-673 1-204 (204)
109 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.7E-45 5.9E-50 384.3 29.5 220 455-695 36-256 (282)
110 PRK14240 phosphate transporter 100.0 8.6E-46 1.9E-50 383.5 25.4 225 457-691 2-240 (250)
111 PRK14251 phosphate ABC transpo 100.0 4.5E-46 9.8E-51 385.8 23.2 226 458-693 4-243 (251)
112 PRK15079 oligopeptide ABC tran 100.0 6.6E-46 1.4E-50 397.6 24.9 226 458-693 8-259 (331)
113 PRK14247 phosphate ABC transpo 100.0 6E-46 1.3E-50 384.7 23.9 227 458-694 3-243 (250)
114 cd03259 ABC_Carb_Solutes_like 100.0 2.5E-46 5.5E-51 378.1 20.5 204 459-678 1-213 (213)
115 PRK10851 sulfate/thiosulfate t 100.0 6.4E-46 1.4E-50 400.7 24.8 218 458-691 2-232 (353)
116 TIGR03005 ectoine_ehuA ectoine 100.0 8.8E-46 1.9E-50 383.9 24.8 219 459-691 1-242 (252)
117 PRK14274 phosphate ABC transpo 100.0 7.7E-46 1.7E-50 385.8 24.4 225 458-692 12-250 (259)
118 PRK14239 phosphate transporter 100.0 9.2E-46 2E-50 383.7 24.8 221 458-688 5-239 (252)
119 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 8.6E-46 1.9E-50 380.2 24.3 217 459-686 2-222 (236)
120 PRK09452 potA putrescine/sperm 100.0 5.7E-46 1.2E-50 403.2 23.7 218 458-691 14-240 (375)
121 COG2884 FtsE Predicted ATPase 100.0 2.1E-46 4.5E-51 353.5 17.5 208 459-679 2-220 (223)
122 cd03264 ABC_drug_resistance_li 100.0 6.2E-46 1.3E-50 374.7 22.2 204 459-678 1-211 (211)
123 cd03295 ABC_OpuCA_Osmoprotecti 100.0 8.1E-46 1.8E-50 381.8 23.5 219 459-686 1-226 (242)
124 PRK14236 phosphate transporter 100.0 1.4E-45 2.9E-50 386.5 25.6 221 456-686 23-257 (272)
125 PRK09536 btuD corrinoid ABC tr 100.0 9.4E-46 2E-50 403.7 25.2 223 458-696 3-237 (402)
126 PRK13632 cbiO cobalt transport 100.0 9E-46 2E-50 387.6 24.0 217 458-686 7-232 (271)
127 PRK11629 lolD lipoprotein tran 100.0 8.3E-46 1.8E-50 379.6 23.2 211 458-679 5-228 (233)
128 PRK13636 cbiO cobalt transport 100.0 9.4E-46 2E-50 389.7 24.1 216 458-686 5-232 (283)
129 cd03266 ABC_NatA_sodium_export 100.0 1E-45 2.2E-50 375.0 23.4 208 459-678 2-218 (218)
130 TIGR03258 PhnT 2-aminoethylpho 100.0 6.4E-46 1.4E-50 401.3 22.9 220 456-691 3-234 (362)
131 PRK14244 phosphate ABC transpo 100.0 5.9E-46 1.3E-50 384.9 21.8 223 459-691 6-243 (251)
132 PRK10575 iron-hydroxamate tran 100.0 1.3E-45 2.8E-50 385.4 24.1 223 458-696 11-246 (265)
133 PRK13652 cbiO cobalt transport 100.0 1.4E-45 3E-50 387.3 24.5 215 459-686 4-228 (277)
134 PRK14268 phosphate ABC transpo 100.0 1.5E-45 3.3E-50 383.3 24.5 225 458-692 12-249 (258)
135 PRK14245 phosphate ABC transpo 100.0 1.2E-45 2.6E-50 382.4 23.5 224 458-691 3-240 (250)
136 PRK13634 cbiO cobalt transport 100.0 2.2E-45 4.8E-50 388.1 25.9 217 459-685 3-235 (290)
137 PRK11831 putative ABC transpor 100.0 1.6E-45 3.5E-50 385.4 24.3 225 458-696 7-244 (269)
138 PRK14248 phosphate ABC transpo 100.0 1.7E-45 3.8E-50 385.0 24.6 219 458-686 21-253 (268)
139 cd03218 ABC_YhbG The ABC trans 100.0 1.5E-45 3.2E-50 377.4 23.4 217 459-685 1-222 (232)
140 PRK11124 artP arginine transpo 100.0 1.7E-45 3.7E-50 379.5 23.9 219 458-686 2-231 (242)
141 PRK13633 cobalt transporter AT 100.0 1.5E-45 3.2E-50 387.7 23.9 218 458-686 4-234 (280)
142 PRK14262 phosphate ABC transpo 100.0 1.8E-45 3.9E-50 381.1 24.1 228 458-695 3-244 (250)
143 PRK14237 phosphate transporter 100.0 2.1E-45 4.5E-50 384.1 24.7 220 457-686 19-252 (267)
144 cd03226 ABC_cobalt_CbiO_domain 100.0 5.8E-46 1.2E-50 373.3 19.7 200 460-675 1-205 (205)
145 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 7.3E-46 1.6E-50 376.1 20.5 205 459-674 1-218 (218)
146 PRK13640 cbiO cobalt transport 100.0 2.5E-45 5.5E-50 386.2 25.2 217 457-685 4-232 (282)
147 cd03265 ABC_DrrA DrrA is the A 100.0 1.6E-45 3.6E-50 374.1 23.0 210 459-683 1-219 (220)
148 cd03268 ABC_BcrA_bacitracin_re 100.0 1.7E-45 3.6E-50 370.8 22.6 204 459-678 1-208 (208)
149 PRK11231 fecE iron-dicitrate t 100.0 1.9E-45 4.2E-50 382.0 23.4 223 459-697 3-237 (255)
150 PRK14261 phosphate ABC transpo 100.0 3.2E-45 6.9E-50 379.9 25.0 229 458-696 6-248 (253)
151 PRK11264 putative amino-acid A 100.0 4.5E-45 9.7E-50 378.2 26.0 219 458-686 3-234 (250)
152 PRK14238 phosphate transporter 100.0 2.6E-45 5.6E-50 384.1 24.4 221 458-688 24-258 (271)
153 PRK11000 maltose/maltodextrin 100.0 2E-45 4.4E-50 399.7 24.4 218 458-691 3-229 (369)
154 TIGR03410 urea_trans_UrtE urea 100.0 1.9E-45 4.2E-50 376.1 22.8 214 459-684 1-220 (230)
155 PRK11614 livF leucine/isoleuci 100.0 3.9E-45 8.4E-50 375.6 25.0 218 458-685 5-226 (237)
156 TIGR02769 nickel_nikE nickel i 100.0 3.5E-45 7.6E-50 382.0 25.1 226 459-695 3-250 (265)
157 TIGR02211 LolD_lipo_ex lipopro 100.0 1.9E-45 4.2E-50 373.8 22.4 206 459-675 2-220 (221)
158 PRK14256 phosphate ABC transpo 100.0 4.2E-45 9E-50 378.8 25.3 224 457-690 3-241 (252)
159 PRK09493 glnQ glutamine ABC tr 100.0 3E-45 6.4E-50 377.2 24.0 218 459-686 2-226 (240)
160 PRK14249 phosphate ABC transpo 100.0 5.5E-45 1.2E-49 377.7 26.1 219 458-686 4-236 (251)
161 PRK14253 phosphate ABC transpo 100.0 3.6E-45 7.7E-50 378.7 24.6 224 458-691 3-239 (249)
162 PRK10619 histidine/lysine/argi 100.0 3.9E-45 8.4E-50 380.1 24.9 216 457-686 4-242 (257)
163 PRK14259 phosphate ABC transpo 100.0 6.3E-45 1.4E-49 380.8 26.4 226 457-692 12-260 (269)
164 PRK14243 phosphate transporter 100.0 5.1E-45 1.1E-49 380.5 25.6 221 458-688 10-251 (264)
165 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.3E-45 7.2E-50 368.8 23.3 218 458-695 4-235 (254)
166 PRK11022 dppD dipeptide transp 100.0 2.8E-45 6.1E-50 392.5 24.1 228 459-694 4-252 (326)
167 cd03290 ABCC_SUR1_N The SUR do 100.0 4.1E-45 8.9E-50 370.7 23.9 210 460-673 2-218 (218)
168 PRK09473 oppD oligopeptide tra 100.0 3.3E-45 7.1E-50 392.3 24.3 229 458-694 12-260 (330)
169 cd03301 ABC_MalK_N The N-termi 100.0 1.8E-45 4E-50 371.8 21.2 204 459-678 1-213 (213)
170 PRK13651 cobalt transporter AT 100.0 5.3E-45 1.1E-49 386.8 25.7 218 459-686 3-255 (305)
171 PRK13648 cbiO cobalt transport 100.0 3.5E-45 7.5E-50 382.9 23.9 217 458-686 7-232 (269)
172 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.3E-45 2.9E-50 374.8 20.1 207 459-681 1-219 (220)
173 cd03247 ABCC_cytochrome_bd The 100.0 2.6E-45 5.5E-50 360.4 21.4 178 459-678 1-178 (178)
174 PRK13644 cbiO cobalt transport 100.0 4.5E-45 9.7E-50 382.8 24.3 214 459-685 2-224 (274)
175 PRK11308 dppF dipeptide transp 100.0 6.7E-45 1.5E-49 389.4 25.8 227 458-694 5-253 (327)
176 TIGR02673 FtsE cell division A 100.0 2.4E-45 5.2E-50 371.2 21.1 202 459-673 2-214 (214)
177 PRK10070 glycine betaine trans 100.0 4.2E-45 9.2E-50 398.3 24.5 207 475-692 42-261 (400)
178 TIGR03411 urea_trans_UrtD urea 100.0 7E-45 1.5E-49 374.9 24.9 222 459-685 3-231 (242)
179 PRK14271 phosphate ABC transpo 100.0 1.1E-44 2.4E-49 380.0 26.6 219 458-686 21-252 (276)
180 cd03292 ABC_FtsE_transporter F 100.0 3E-45 6.5E-50 370.5 21.5 203 459-674 1-214 (214)
181 cd03225 ABC_cobalt_CbiO_domain 100.0 2.3E-45 5E-50 370.6 20.6 202 460-673 1-211 (211)
182 PRK13649 cbiO cobalt transport 100.0 9.9E-45 2.1E-49 381.7 25.9 220 459-685 3-234 (280)
183 PRK11607 potG putrescine trans 100.0 5.7E-45 1.2E-49 396.0 24.5 219 457-691 18-245 (377)
184 PRK10895 lipopolysaccharide AB 100.0 6E-45 1.3E-49 375.1 23.4 218 458-685 3-226 (241)
185 PRK10247 putative ABC transpor 100.0 3.9E-45 8.4E-50 372.6 21.6 210 458-681 7-223 (225)
186 PRK14254 phosphate ABC transpo 100.0 1.1E-44 2.3E-49 381.7 25.6 220 457-686 38-270 (285)
187 PRK14260 phosphate ABC transpo 100.0 7.4E-45 1.6E-49 378.4 24.1 225 457-691 6-249 (259)
188 PRK13645 cbiO cobalt transport 100.0 1.1E-44 2.4E-49 383.0 25.7 223 456-685 4-240 (289)
189 cd03300 ABC_PotA_N PotA is an 100.0 4.2E-45 9.2E-50 374.1 21.6 212 459-686 1-221 (232)
190 PRK14270 phosphate ABC transpo 100.0 1E-44 2.2E-49 375.7 24.7 219 458-686 4-236 (251)
191 PRK13638 cbiO cobalt transport 100.0 1E-44 2.2E-49 379.9 24.5 214 459-686 2-226 (271)
192 TIGR03415 ABC_choXWV_ATP choli 100.0 6E-45 1.3E-49 394.4 23.5 211 474-695 37-264 (382)
193 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.8E-45 1.9E-49 366.3 23.1 202 459-678 1-211 (211)
194 PRK10584 putative ABC transpor 100.0 9.9E-45 2.2E-49 370.4 23.7 209 458-677 6-227 (228)
195 cd03257 ABC_NikE_OppD_transpor 100.0 1.3E-44 2.8E-49 369.4 24.5 213 459-678 2-228 (228)
196 PRK14266 phosphate ABC transpo 100.0 1.2E-44 2.5E-49 375.0 24.5 226 458-693 3-242 (250)
197 PRK14252 phosphate ABC transpo 100.0 1.4E-44 3E-49 377.6 25.3 226 456-691 14-255 (265)
198 TIGR03873 F420-0_ABC_ATP propo 100.0 9.5E-45 2.1E-49 377.0 23.8 213 459-685 2-226 (256)
199 PRK14241 phosphate transporter 100.0 9.8E-45 2.1E-49 377.3 23.8 219 458-686 4-243 (258)
200 PRK14272 phosphate ABC transpo 100.0 1.7E-44 3.7E-49 374.3 25.5 226 458-693 4-244 (252)
201 PRK14263 phosphate ABC transpo 100.0 1.4E-44 3E-49 376.4 24.8 226 458-693 8-253 (261)
202 PRK14275 phosphate ABC transpo 100.0 1.2E-44 2.6E-49 381.8 24.6 228 458-695 39-280 (286)
203 PRK11300 livG leucine/isoleuci 100.0 1.4E-44 3E-49 375.6 24.7 220 458-685 5-243 (255)
204 cd03235 ABC_Metallic_Cations A 100.0 3.4E-45 7.5E-50 369.9 19.6 199 460-678 1-213 (213)
205 PRK11247 ssuB aliphatic sulfon 100.0 9.7E-45 2.1E-49 376.0 23.4 205 457-681 11-219 (257)
206 PRK13537 nodulation ABC transp 100.0 8.8E-45 1.9E-49 385.8 23.5 214 458-686 7-228 (306)
207 PRK15112 antimicrobial peptide 100.0 1.7E-44 3.7E-49 377.2 25.2 230 458-698 4-253 (267)
208 PRK13548 hmuV hemin importer A 100.0 2.3E-44 4.9E-49 374.4 25.8 213 459-685 3-230 (258)
209 PRK10771 thiQ thiamine transpo 100.0 2.5E-44 5.3E-49 368.4 25.5 210 459-686 2-220 (232)
210 TIGR00968 3a0106s01 sulfate AB 100.0 1.6E-44 3.4E-49 371.0 24.1 212 459-686 1-221 (237)
211 COG1118 CysA ABC-type sulfate/ 100.0 4E-45 8.6E-50 368.7 18.7 216 458-689 2-231 (345)
212 PRK10908 cell division protein 100.0 1.3E-44 2.8E-49 368.1 22.5 205 459-676 2-217 (222)
213 PRK13641 cbiO cobalt transport 100.0 3.3E-44 7.1E-49 378.7 26.2 221 458-685 2-234 (287)
214 PRK14246 phosphate ABC transpo 100.0 1.5E-44 3.3E-49 375.2 23.3 229 457-695 9-251 (257)
215 PRK13639 cbiO cobalt transport 100.0 1.6E-44 3.4E-49 379.0 23.4 214 459-685 2-226 (275)
216 TIGR01288 nodI ATP-binding ABC 100.0 2.7E-44 5.8E-49 382.3 25.3 218 458-686 4-225 (303)
217 PRK10253 iron-enterobactin tra 100.0 1.9E-44 4.1E-49 376.5 23.7 215 457-685 6-233 (265)
218 PRK14258 phosphate ABC transpo 100.0 2.4E-44 5.3E-49 374.9 24.5 223 457-689 6-249 (261)
219 cd03246 ABCC_Protease_Secretio 100.0 1.5E-44 3.2E-49 353.3 21.2 172 459-674 1-173 (173)
220 PRK14255 phosphate ABC transpo 100.0 2.8E-44 6E-49 372.7 24.2 222 458-689 5-240 (252)
221 cd03262 ABC_HisP_GlnQ_permease 100.0 1.4E-44 3E-49 365.4 21.3 206 459-674 1-213 (213)
222 PRK11701 phnK phosphonate C-P 100.0 8E-44 1.7E-48 370.5 26.8 228 458-695 6-251 (258)
223 PRK15093 antimicrobial peptide 100.0 3.3E-44 7.2E-49 385.3 24.6 229 458-694 3-257 (330)
224 cd03269 ABC_putative_ATPase Th 100.0 1.2E-44 2.7E-49 365.0 19.7 206 459-678 1-210 (210)
225 TIGR01277 thiQ thiamine ABC tr 100.0 4.3E-44 9.3E-49 361.9 23.1 203 459-679 1-212 (213)
226 PRK14265 phosphate ABC transpo 100.0 1.3E-43 2.8E-48 371.7 27.5 220 457-686 19-259 (274)
227 cd03299 ABC_ModC_like Archeal 100.0 5.4E-44 1.2E-48 366.6 24.0 211 459-686 1-220 (235)
228 PRK14264 phosphate ABC transpo 100.0 6.7E-44 1.5E-48 379.3 25.6 219 458-686 45-290 (305)
229 PRK13547 hmuV hemin importer A 100.0 4.6E-44 1E-48 374.0 23.9 213 459-685 2-244 (272)
230 TIGR03522 GldA_ABC_ATP gliding 100.0 3.7E-44 8.1E-49 380.7 23.2 217 459-686 3-222 (301)
231 PRK11144 modC molybdate transp 100.0 4.1E-44 8.9E-49 387.7 23.7 211 459-687 2-220 (352)
232 TIGR01978 sufC FeS assembly AT 100.0 3.6E-44 7.8E-49 369.7 22.0 216 459-684 1-233 (243)
233 PRK10419 nikE nickel transport 100.0 6.5E-44 1.4E-48 372.9 24.0 230 458-695 3-250 (268)
234 PRK09984 phosphonate/organopho 100.0 1E-43 2.2E-48 370.5 24.9 224 458-698 4-252 (262)
235 cd03234 ABCG_White The White s 100.0 4.1E-44 8.8E-49 365.4 21.2 214 459-678 4-226 (226)
236 PRK13536 nodulation factor exp 100.0 1.5E-43 3.3E-48 380.4 24.4 218 458-686 41-262 (340)
237 PRK10418 nikD nickel transport 100.0 1.8E-43 4E-48 366.9 24.2 227 458-698 4-244 (254)
238 TIGR01188 drrA daunorubicin re 100.0 9.6E-44 2.1E-48 377.9 21.7 201 474-686 6-214 (302)
239 TIGR02982 heterocyst_DevA ABC 100.0 1.6E-43 3.5E-48 359.4 22.2 205 459-674 2-219 (220)
240 cd03233 ABC_PDR_domain1 The pl 100.0 2.4E-43 5.1E-48 353.4 21.8 191 458-678 3-202 (202)
241 TIGR02142 modC_ABC molybdenum 100.0 2.2E-43 4.8E-48 382.5 23.2 212 463-691 4-227 (354)
242 PRK11248 tauB taurine transpor 100.0 2.8E-43 6.2E-48 365.3 22.4 203 459-680 2-215 (255)
243 TIGR02323 CP_lyasePhnK phospho 100.0 4.9E-43 1.1E-47 363.6 24.1 228 458-695 3-248 (253)
244 PRK09580 sufC cysteine desulfu 100.0 2.6E-43 5.7E-48 364.5 20.7 216 459-684 2-234 (248)
245 cd03230 ABC_DR_subfamily_A Thi 100.0 5.9E-43 1.3E-47 342.0 20.7 170 459-674 1-173 (173)
246 cd03229 ABC_Class3 This class 100.0 6.8E-43 1.5E-47 343.1 20.5 172 459-673 1-178 (178)
247 cd03228 ABCC_MRP_Like The MRP 100.0 9.5E-43 2.1E-47 339.9 21.3 171 459-673 1-171 (171)
248 cd03232 ABC_PDR_domain2 The pl 100.0 6.5E-43 1.4E-47 347.5 20.2 182 458-678 3-192 (192)
249 cd03297 ABC_ModC_molybdenum_tr 100.0 1.1E-42 2.4E-47 351.9 22.2 204 460-678 3-214 (214)
250 CHL00131 ycf16 sulfate ABC tra 100.0 1.6E-42 3.5E-47 359.5 23.4 213 458-683 7-239 (252)
251 cd03213 ABCG_EPDR ABCG transpo 100.0 1.1E-42 2.3E-47 346.4 21.1 183 458-678 3-194 (194)
252 TIGR03740 galliderm_ABC gallid 100.0 1.3E-42 2.9E-47 353.5 22.3 206 459-682 1-210 (223)
253 PRK15056 manganese/iron transp 100.0 1.8E-42 4E-47 362.9 22.6 210 458-685 6-230 (272)
254 PRK09544 znuC high-affinity zi 100.0 4E-42 8.8E-47 355.6 24.2 208 458-695 4-217 (251)
255 cd03215 ABC_Carb_Monos_II This 100.0 1.6E-42 3.5E-47 341.7 20.1 172 458-674 4-182 (182)
256 COG4175 ProV ABC-type proline/ 100.0 6.9E-43 1.5E-47 352.5 17.6 226 458-694 4-263 (386)
257 cd03223 ABCD_peroxisomal_ALDP 100.0 2.6E-42 5.6E-47 335.0 20.7 163 459-672 1-163 (166)
258 TIGR03608 L_ocin_972_ABC putat 100.0 1.5E-42 3.3E-47 348.7 19.3 195 461-669 1-206 (206)
259 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.5E-42 9.8E-47 343.6 22.2 185 459-684 1-192 (200)
260 COG1131 CcmA ABC-type multidru 100.0 4.7E-42 1E-46 361.8 23.3 214 458-685 4-226 (293)
261 TIGR02770 nickel_nikD nickel i 100.0 2.9E-42 6.3E-47 352.6 21.0 208 476-693 1-223 (230)
262 PRK03695 vitamin B12-transport 100.0 1.1E-41 2.3E-46 352.2 24.2 221 459-696 1-231 (248)
263 cd03214 ABC_Iron-Siderophores_ 100.0 4.6E-42 1E-46 337.8 19.3 177 460-678 1-180 (180)
264 PRK10261 glutathione transport 100.0 1.1E-41 2.4E-46 395.1 24.9 229 458-696 313-565 (623)
265 COG1123 ATPase components of v 100.0 1.7E-41 3.8E-46 372.1 23.6 229 458-696 280-530 (539)
266 PRK13540 cytochrome c biogenes 100.0 1.2E-41 2.5E-46 340.7 20.1 195 459-668 2-198 (200)
267 cd03231 ABC_CcmA_heme_exporter 100.0 2.3E-41 4.9E-46 338.9 21.9 195 459-669 1-198 (201)
268 COG4555 NatA ABC-type Na+ tran 100.0 6.9E-42 1.5E-46 325.4 16.6 214 459-686 2-223 (245)
269 cd03216 ABC_Carb_Monos_I This 100.0 2.8E-41 6.2E-46 326.7 21.2 159 459-676 1-162 (163)
270 PRK15439 autoinducer 2 ABC tra 100.0 2.5E-41 5.5E-46 384.3 23.8 214 458-685 11-229 (510)
271 PRK13549 xylose transporter AT 100.0 2.7E-41 5.9E-46 384.1 23.3 217 458-684 5-231 (506)
272 TIGR01184 ntrCD nitrate transp 100.0 2.5E-41 5.3E-46 345.7 19.6 192 477-684 1-203 (230)
273 COG0444 DppD ABC-type dipeptid 100.0 7E-41 1.5E-45 343.9 22.5 228 459-694 2-252 (316)
274 PRK09700 D-allose transporter 100.0 2.9E-41 6.4E-46 384.3 21.5 218 458-685 5-234 (510)
275 COG0410 LivF ABC-type branched 100.0 1.7E-40 3.7E-45 324.9 23.7 220 458-686 3-227 (237)
276 COG4619 ABC-type uncharacteriz 100.0 1.5E-41 3.2E-46 313.8 14.7 194 473-676 15-214 (223)
277 PRK13538 cytochrome c biogenes 100.0 7.9E-41 1.7E-45 335.7 21.1 196 459-669 2-202 (204)
278 PRK10261 glutathione transport 100.0 4.6E-41 1E-45 390.0 22.0 227 458-692 12-265 (623)
279 PRK15134 microcin C ABC transp 100.0 5.4E-41 1.2E-45 383.7 22.1 227 458-692 275-522 (529)
280 PRK10762 D-ribose transporter 100.0 8.6E-41 1.9E-45 379.6 23.4 217 458-684 4-229 (501)
281 PLN03211 ABC transporter G-25; 100.0 1.1E-40 2.4E-45 386.6 24.6 204 473-685 80-296 (659)
282 cd03267 ABC_NatA_like Similar 100.0 1E-40 2.2E-45 342.4 21.6 195 474-678 34-236 (236)
283 COG1123 ATPase components of v 100.0 9.8E-41 2.1E-45 366.2 21.9 228 458-694 5-253 (539)
284 PRK13539 cytochrome c biogenes 100.0 1.3E-40 2.7E-45 335.0 21.0 195 459-671 3-200 (207)
285 PRK10982 galactose/methyl gala 100.0 1E-40 2.2E-45 378.2 22.7 214 461-684 1-222 (491)
286 PRK11288 araG L-arabinose tran 100.0 1.4E-40 3.1E-45 377.7 23.7 212 458-679 4-223 (501)
287 PRK10938 putative molybdenum t 100.0 1.2E-40 2.6E-45 377.6 23.1 211 458-685 3-224 (490)
288 TIGR01189 ccmA heme ABC export 100.0 1E-40 2.2E-45 333.4 19.5 194 459-668 1-197 (198)
289 COG4608 AppF ABC-type oligopep 100.0 7.1E-41 1.5E-45 337.1 18.1 196 458-695 4-209 (268)
290 COG4181 Predicted ABC-type tra 100.0 5.4E-41 1.2E-45 311.1 15.7 212 458-677 6-227 (228)
291 PRK15134 microcin C ABC transp 100.0 3E-40 6.4E-45 377.6 25.2 221 458-686 5-247 (529)
292 TIGR00955 3a01204 The Eye Pigm 100.0 5.9E-41 1.3E-45 388.7 19.2 220 457-685 16-256 (617)
293 COG4172 ABC-type uncharacteriz 100.0 5.7E-40 1.2E-44 340.0 23.4 226 457-693 275-524 (534)
294 TIGR02324 CP_lyasePhnL phospho 100.0 2.5E-40 5.4E-45 337.0 20.5 201 459-669 2-222 (224)
295 PRK13543 cytochrome c biogenes 100.0 3.4E-40 7.3E-45 333.6 21.1 197 458-671 11-212 (214)
296 TIGR03771 anch_rpt_ABC anchore 100.0 3.3E-40 7.2E-45 335.8 19.9 195 482-695 1-209 (223)
297 PRK10535 macrolide transporter 100.0 4.5E-40 9.7E-45 383.0 23.5 220 458-684 4-231 (648)
298 PRK13541 cytochrome c biogenes 100.0 3.5E-40 7.5E-45 328.7 19.0 190 459-667 2-193 (195)
299 TIGR02633 xylG D-xylose ABC tr 100.0 7.9E-40 1.7E-44 371.8 23.7 215 459-683 2-228 (500)
300 TIGR01166 cbiO cobalt transpor 100.0 2.6E-40 5.6E-45 328.3 17.3 176 473-659 4-189 (190)
301 TIGR03269 met_CoM_red_A2 methy 100.0 4.9E-40 1.1E-44 375.2 21.9 222 458-685 279-517 (520)
302 PRK13545 tagH teichoic acids e 100.0 1.5E-39 3.2E-44 358.3 23.9 213 458-695 21-241 (549)
303 PRK13546 teichoic acids export 100.0 1.5E-39 3.2E-44 338.4 22.7 213 458-695 4-241 (264)
304 TIGR03269 met_CoM_red_A2 methy 100.0 5.5E-40 1.2E-44 374.7 21.2 214 459-686 1-259 (520)
305 KOG0060 Long-chain acyl-CoA tr 100.0 3.8E-37 8.2E-42 332.0 41.7 472 186-671 131-641 (659)
306 PRK13549 xylose transporter AT 100.0 8.8E-40 1.9E-44 371.7 21.7 220 458-684 259-493 (506)
307 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 9.5E-40 2.1E-44 332.6 19.0 195 459-678 23-224 (224)
308 COG0411 LivG ABC-type branched 100.0 2.2E-39 4.7E-44 319.5 18.1 218 459-686 5-240 (250)
309 COG1137 YhbG ABC-type (unclass 100.0 6.7E-40 1.4E-44 311.6 13.9 223 457-686 3-229 (243)
310 TIGR01257 rim_protein retinal- 100.0 8.7E-38 1.9E-42 388.3 36.5 217 457-686 1936-2160(2272)
311 TIGR01257 rim_protein retinal- 100.0 4.3E-39 9.4E-44 399.9 23.9 217 457-686 927-1150(2272)
312 COG4161 ArtP ABC-type arginine 100.0 3.3E-39 7.2E-44 296.1 16.1 221 458-693 2-238 (242)
313 PRK09700 D-allose transporter 100.0 3.6E-39 7.9E-44 367.2 20.2 213 458-682 265-495 (510)
314 COG4559 ABC-type hemin transpo 100.0 1.7E-38 3.7E-43 304.6 20.3 221 459-695 2-238 (259)
315 COG4525 TauB ABC-type taurine 100.0 5.4E-39 1.2E-43 303.8 16.7 205 458-679 3-218 (259)
316 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-38 2.3E-43 362.6 21.9 218 458-682 257-489 (500)
317 TIGR01187 potA spermidine/putr 100.0 7E-39 1.5E-43 343.4 19.1 187 492-691 1-196 (325)
318 COG1129 MglA ABC-type sugar tr 100.0 2.3E-38 5E-43 345.5 23.0 210 458-679 8-228 (500)
319 COG4598 HisP ABC-type histidin 100.0 7.4E-39 1.6E-43 298.8 15.4 220 458-689 6-245 (256)
320 TIGR00956 3a01205 Pleiotropic 100.0 1.8E-38 3.9E-43 394.3 23.7 213 458-681 759-989 (1394)
321 PRK15064 ABC transporter ATP-b 100.0 2.9E-38 6.2E-43 361.3 22.5 209 459-685 2-242 (530)
322 PRK10762 D-ribose transporter 100.0 3.1E-38 6.6E-43 358.7 21.3 211 458-683 257-482 (501)
323 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.6E-38 3.4E-43 328.9 16.7 202 462-678 4-220 (255)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.2E-38 1.4E-42 359.9 23.3 210 458-685 4-248 (552)
325 PRK15064 ABC transporter ATP-b 100.0 6.8E-38 1.5E-42 358.2 23.3 203 458-686 319-526 (530)
326 PRK11288 araG L-arabinose tran 100.0 2.3E-38 5E-43 359.6 18.9 213 458-684 257-484 (501)
327 PRK15177 Vi polysaccharide exp 100.0 5.8E-38 1.3E-42 316.8 19.4 187 476-685 2-192 (213)
328 PRK11819 putative ABC transpor 100.0 8.6E-38 1.9E-42 358.8 22.8 210 458-685 6-250 (556)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.1E-37 2.3E-42 295.3 18.6 143 459-673 1-144 (144)
330 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.6E-37 3.5E-42 320.0 20.4 194 466-684 1-206 (246)
331 COG4148 ModC ABC-type molybdat 100.0 9.8E-38 2.1E-42 310.2 16.3 197 478-686 15-219 (352)
332 PRK15439 autoinducer 2 ABC tra 100.0 2.7E-37 5.9E-42 351.3 20.9 213 458-685 268-492 (510)
333 COG3845 ABC-type uncharacteriz 100.0 4.8E-37 1E-41 328.2 21.0 209 458-676 4-220 (501)
334 PRK10938 putative molybdenum t 100.0 2.8E-37 6.1E-42 350.1 18.6 206 458-677 260-484 (490)
335 PRK10982 galactose/methyl gala 100.0 1.7E-36 3.7E-41 343.6 23.1 212 458-681 250-476 (491)
336 COG4604 CeuD ABC-type enteroch 100.0 2.7E-37 5.9E-42 292.8 13.0 222 459-696 2-234 (252)
337 cd00267 ABC_ATPase ABC (ATP-bi 100.0 4.2E-36 9.1E-41 288.9 19.4 155 460-673 1-157 (157)
338 PLN03140 ABC transporter G fam 100.0 1.1E-35 2.3E-40 368.3 25.1 213 458-680 867-1105(1470)
339 PRK11819 putative ABC transpor 100.0 1.3E-35 2.9E-40 340.7 23.4 202 458-686 324-534 (556)
340 COG4172 ABC-type uncharacteriz 100.0 7.6E-36 1.6E-40 309.5 18.7 232 458-697 6-259 (534)
341 PLN03073 ABC transporter F fam 100.0 1.3E-35 2.9E-40 346.0 22.8 201 458-684 508-713 (718)
342 cd03222 ABC_RNaseL_inhibitor T 100.0 8.5E-36 1.8E-40 290.7 16.8 145 462-675 4-151 (177)
343 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.3E-35 5E-40 338.6 23.1 201 458-685 322-531 (552)
344 PRK11147 ABC transporter ATPas 100.0 2.5E-35 5.4E-40 343.0 23.2 201 458-685 319-528 (635)
345 PRK10636 putative ABC transpor 100.0 2.4E-35 5.2E-40 342.6 22.7 200 458-684 312-516 (638)
346 cd03238 ABC_UvrA The excision 100.0 2.3E-35 5.1E-40 287.4 18.4 161 473-678 7-176 (176)
347 PRK13409 putative ATPase RIL; 100.0 4.5E-35 9.7E-40 335.8 20.9 192 458-679 340-536 (590)
348 TIGR00956 3a01205 Pleiotropic 100.0 7.2E-35 1.6E-39 362.1 19.5 208 474-684 74-299 (1394)
349 PRK10636 putative ABC transpor 100.0 4E-34 8.6E-39 332.4 23.8 208 459-685 2-236 (638)
350 COG1101 PhnK ABC-type uncharac 100.0 3.2E-34 6.9E-39 275.8 16.4 202 473-676 18-229 (263)
351 PLN03140 ABC transporter G fam 100.0 2.6E-34 5.7E-39 356.0 17.1 209 473-684 177-426 (1470)
352 COG1119 ModF ABC-type molybden 100.0 5.8E-34 1.2E-38 281.1 16.0 211 458-679 31-256 (257)
353 PRK11147 ABC transporter ATPas 100.0 3.1E-33 6.7E-38 325.5 24.9 208 458-685 3-243 (635)
354 COG4167 SapF ABC-type antimicr 100.0 1.9E-33 4.1E-38 263.2 16.5 228 459-698 5-253 (267)
355 PRK13409 putative ATPase RIL; 100.0 7E-34 1.5E-38 326.0 14.9 193 462-672 77-287 (590)
356 PLN03073 ABC transporter F fam 100.0 5.9E-33 1.3E-37 323.8 20.0 222 457-685 176-431 (718)
357 COG4152 ABC-type uncharacteriz 100.0 8.9E-33 1.9E-37 270.4 16.2 214 458-685 2-219 (300)
358 KOG0061 Transporter, ABC super 100.0 6.5E-33 1.4E-37 318.6 17.8 221 457-685 24-260 (613)
359 COG0488 Uup ATPase components 100.0 2.8E-32 6E-37 305.4 20.7 209 458-686 3-241 (530)
360 PF00005 ABC_tran: ABC transpo 100.0 3.2E-33 6.9E-38 262.2 11.0 136 477-627 1-137 (137)
361 COG4136 ABC-type uncharacteriz 100.0 1.3E-32 2.7E-37 250.0 14.0 194 458-667 2-205 (213)
362 COG0396 sufC Cysteine desulfur 100.0 1E-31 2.3E-36 261.9 20.9 226 458-696 3-245 (251)
363 COG1134 TagH ABC-type polysacc 100.0 1.5E-31 3.3E-36 264.4 21.2 196 473-696 39-243 (249)
364 COG4674 Uncharacterized ABC-ty 100.0 4.2E-32 9.1E-37 257.2 16.1 215 458-686 5-236 (249)
365 KOG0064 Peroxisomal long-chain 100.0 7.6E-29 1.6E-33 264.2 41.3 465 187-670 167-682 (728)
366 cd03270 ABC_UvrA_I The excisio 100.0 5.3E-31 1.2E-35 268.4 17.5 192 473-678 7-226 (226)
367 COG4107 PhnK ABC-type phosphon 100.0 2.6E-30 5.7E-35 240.3 15.9 228 458-695 6-251 (258)
368 COG0488 Uup ATPase components 100.0 1.4E-29 3E-34 283.7 24.3 203 457-686 320-526 (530)
369 cd03271 ABC_UvrA_II The excisi 100.0 1.4E-30 3.1E-35 268.6 12.8 192 476-680 10-261 (261)
370 COG4586 ABC-type uncharacteriz 100.0 2.9E-30 6.2E-35 256.7 14.0 212 474-694 37-254 (325)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 3.8E-30 8.3E-35 256.3 13.0 164 478-671 14-190 (197)
372 COG4133 CcmA ABC-type transpor 100.0 2.2E-29 4.8E-34 238.3 12.3 188 460-662 4-195 (209)
373 cd03279 ABC_sbcCD SbcCD and ot 100.0 2.3E-29 4.9E-34 254.3 11.8 192 458-674 5-211 (213)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 8.9E-29 1.9E-33 255.1 11.8 191 458-670 3-234 (243)
375 PF00664 ABC_membrane: ABC tra 100.0 7.7E-25 1.7E-29 225.4 38.1 273 138-412 2-275 (275)
376 COG4778 PhnL ABC-type phosphon 99.9 6.7E-28 1.4E-32 223.7 10.6 203 458-670 4-226 (235)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.2E-27 4.7E-32 246.0 11.9 183 487-670 25-242 (251)
378 KOG0059 Lipid exporter ABCA1 a 99.9 5.3E-27 1.2E-31 280.9 15.7 217 457-686 563-788 (885)
379 cd03240 ABC_Rad50 The catalyti 99.9 1.1E-26 2.3E-31 232.9 12.7 163 480-671 16-197 (204)
380 COG4138 BtuD ABC-type cobalami 99.9 1.7E-27 3.7E-32 221.9 6.1 208 459-685 4-221 (248)
381 cd03274 ABC_SMC4_euk Eukaryoti 99.9 5.2E-27 1.1E-31 236.4 8.1 185 458-671 5-204 (212)
382 PRK00349 uvrA excinuclease ABC 99.9 1.6E-25 3.5E-30 265.3 19.1 102 587-688 818-930 (943)
383 PRK00635 excinuclease ABC subu 99.9 3.3E-25 7.1E-30 272.5 21.9 212 458-686 600-907 (1809)
384 KOG0927 Predicted transporter 99.9 2.7E-26 5.8E-31 246.8 9.7 199 458-681 389-592 (614)
385 KOG0065 Pleiotropic drug resis 99.9 4.7E-26 1E-30 266.9 12.5 198 473-680 803-1016(1391)
386 COG1129 MglA ABC-type sugar tr 99.9 2.6E-24 5.6E-29 235.5 18.8 211 458-677 263-482 (500)
387 TIGR00630 uvra excinuclease AB 99.9 5E-24 1.1E-28 252.2 19.9 97 587-683 816-923 (924)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.9 5.5E-25 1.2E-29 227.4 8.6 184 488-671 23-233 (247)
389 COG3845 ABC-type uncharacteriz 99.9 2.2E-22 4.7E-27 216.1 19.0 214 458-682 257-489 (501)
390 KOG0062 ATPase component of AB 99.9 1.1E-22 2.3E-27 218.0 15.0 195 457-676 361-559 (582)
391 KOG0927 Predicted transporter 99.9 3.4E-22 7.3E-27 215.3 17.2 225 456-686 73-310 (614)
392 KOG0066 eIF2-interacting prote 99.9 2.2E-22 4.7E-27 210.3 13.4 197 458-681 586-787 (807)
393 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.3E-22 2.9E-27 202.3 11.3 168 477-673 12-192 (198)
394 cd01128 rho_factor Transcripti 99.9 3.1E-22 6.8E-27 205.3 11.0 199 481-699 10-230 (249)
395 cd03239 ABC_SMC_head The struc 99.9 1.9E-21 4.1E-26 190.6 12.1 85 581-671 83-172 (178)
396 COG1245 Predicted ATPase, RNas 99.9 5.2E-21 1.1E-25 202.1 14.3 182 463-671 340-531 (591)
397 KOG0062 ATPase component of AB 99.8 8.2E-22 1.8E-26 211.3 7.7 200 456-686 78-286 (582)
398 COG4170 SapD ABC-type antimicr 99.8 1E-20 2.2E-25 181.4 13.5 213 473-695 19-258 (330)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.8 7.7E-21 1.7E-25 191.6 8.7 180 478-673 15-211 (213)
400 cd03241 ABC_RecN RecN ATPase i 99.8 9.1E-20 2E-24 191.5 14.6 76 598-673 170-249 (276)
401 KOG2355 Predicted ABC-type tra 99.8 2.4E-19 5.2E-24 171.7 15.3 211 456-683 11-235 (291)
402 cd03280 ABC_MutS2 MutS2 homolo 99.8 4.3E-20 9.4E-25 184.8 10.7 145 477-678 17-172 (200)
403 KOG0065 Pleiotropic drug resis 99.8 1E-19 2.2E-24 214.1 12.7 208 473-685 127-351 (1391)
404 COG2401 ABC-type ATPase fused 99.8 5.3E-19 1.1E-23 184.8 13.4 202 453-675 352-588 (593)
405 COG0178 UvrA Excinuclease ATPa 99.8 1.2E-18 2.7E-23 195.6 17.3 120 575-695 787-928 (935)
406 PRK00635 excinuclease ABC subu 99.8 6.6E-18 1.4E-22 208.7 19.6 102 587-689 1689-1800(1809)
407 cd03227 ABC_Class2 ABC-type Cl 99.8 3.8E-18 8.3E-23 164.9 13.1 73 599-671 78-155 (162)
408 COG1245 Predicted ATPase, RNas 99.8 2.8E-18 6.1E-23 181.6 10.5 172 483-671 96-288 (591)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.7 7.1E-18 1.5E-22 171.1 8.6 152 473-678 16-174 (222)
410 cd03242 ABC_RecF RecF is a rec 99.7 5E-17 1.1E-21 170.2 15.1 191 477-674 12-269 (270)
411 TIGR00630 uvra excinuclease AB 99.7 6.6E-17 1.4E-21 192.0 14.3 99 587-685 475-583 (924)
412 PRK00349 uvrA excinuclease ABC 99.7 7.1E-17 1.5E-21 192.1 14.4 104 580-685 472-585 (943)
413 cd00820 PEPCK_HprK Phosphoenol 99.7 1.2E-17 2.6E-22 147.8 5.8 76 474-557 2-77 (107)
414 TIGR00606 rad50 rad50. This fa 99.7 1.2E-16 2.5E-21 200.1 13.2 134 546-685 1153-1308(1311)
415 cd03283 ABC_MutS-like MutS-lik 99.7 5.3E-17 1.1E-21 162.0 6.9 138 474-663 14-154 (199)
416 cd03243 ABC_MutS_homologs The 99.7 1.4E-16 3E-21 159.7 9.9 155 478-683 20-177 (202)
417 TIGR02858 spore_III_AA stage I 99.6 1.9E-15 4E-20 157.0 11.6 142 488-684 112-268 (270)
418 cd03284 ABC_MutS1 MutS1 homolo 99.5 1.2E-14 2.7E-19 146.9 8.5 156 474-683 18-179 (216)
419 PRK00064 recF recombination pr 99.5 2E-13 4.4E-18 148.6 17.5 76 597-674 272-359 (361)
420 cd03282 ABC_MSH4_euk MutS4 hom 99.5 4.8E-14 1E-18 141.2 11.0 141 473-664 15-158 (204)
421 PF02463 SMC_N: RecF/RecN/SMC 99.5 3.4E-14 7.4E-19 144.2 10.0 73 598-670 136-212 (220)
422 PHA02562 46 endonuclease subun 99.5 1.4E-14 3E-19 167.7 7.2 105 568-674 433-555 (562)
423 KOG0063 RNAse L inhibitor, ABC 99.5 1.9E-13 4E-18 144.1 13.1 196 465-685 342-548 (592)
424 KOG0066 eIF2-interacting prote 99.5 5.6E-14 1.2E-18 147.8 7.7 211 458-682 264-496 (807)
425 PRK07721 fliI flagellum-specif 99.4 1.4E-11 2.9E-16 136.2 16.8 176 474-681 146-339 (438)
426 PTZ00132 GTP-binding nuclear p 99.4 1.4E-12 3.1E-17 131.9 8.3 145 489-645 11-204 (215)
427 TIGR00634 recN DNA repair prot 99.3 2.3E-12 5.1E-17 148.4 10.0 77 597-673 439-519 (563)
428 cd03281 ABC_MSH5_euk MutS5 hom 99.3 7.7E-12 1.7E-16 126.3 10.5 137 475-664 17-161 (213)
429 PRK10869 recombination and rep 99.3 4.7E-12 1E-16 144.8 10.0 77 597-673 429-509 (553)
430 smart00534 MUTSac ATPase domai 99.3 6.1E-12 1.3E-16 124.3 7.4 76 594-672 57-137 (185)
431 TIGR01069 mutS2 MutS2 family p 99.2 6.4E-11 1.4E-15 139.8 14.9 150 457-660 294-448 (771)
432 PRK13695 putative NTPase; Prov 99.2 1.3E-11 2.7E-16 120.8 5.7 82 593-677 73-156 (174)
433 COG0178 UvrA Excinuclease ATPa 99.2 1.1E-10 2.3E-15 132.4 13.4 107 581-688 465-580 (935)
434 TIGR02788 VirB11 P-type DNA tr 99.2 3.3E-11 7.1E-16 128.6 8.4 143 480-684 137-280 (308)
435 KOG0063 RNAse L inhibitor, ABC 99.2 4.4E-11 9.5E-16 126.4 7.9 172 485-671 98-288 (592)
436 PRK08533 flagellar accessory p 99.2 3.8E-10 8.3E-15 115.3 14.0 158 458-670 7-184 (230)
437 cd03287 ABC_MSH3_euk MutS3 hom 99.2 1E-10 2.2E-15 118.5 9.6 47 474-520 18-65 (222)
438 PRK14079 recF recombination pr 99.2 7.2E-10 1.6E-14 120.3 16.7 75 597-676 262-345 (349)
439 PRK01156 chromosome segregatio 99.1 1.4E-10 3E-15 141.5 11.6 76 595-670 798-883 (895)
440 TIGR00767 rho transcription te 99.1 2E-10 4.4E-15 123.7 11.5 83 424-514 102-195 (415)
441 TIGR03238 dnd_assoc_3 dnd syst 99.1 8.5E-11 1.8E-15 128.5 4.9 67 475-544 20-87 (504)
442 PRK12369 putative transporter; 99.1 3.6E-06 7.9E-11 90.1 39.3 244 180-438 66-321 (326)
443 PRK03918 chromosome segregatio 99.1 3.2E-10 6.9E-15 138.2 9.5 75 597-671 787-868 (880)
444 cd01124 KaiC KaiC is a circadi 99.1 1.3E-09 2.9E-14 107.3 12.1 84 587-670 60-163 (187)
445 PRK11098 microcin B17 transpor 99.1 1.9E-06 4.2E-11 94.2 37.5 243 179-439 140-396 (409)
446 PRK00409 recombination and DNA 99.0 3.6E-10 7.7E-15 134.0 9.0 149 476-675 317-468 (782)
447 TIGR02168 SMC_prok_B chromosom 99.0 2.7E-10 5.9E-15 142.9 8.1 76 595-670 1086-1165(1179)
448 PRK10733 hflB ATP-dependent me 99.0 5.7E-11 1.2E-15 138.6 0.3 167 310-511 35-209 (644)
449 PRK13830 conjugal transfer pro 99.0 1.9E-09 4.1E-14 129.2 13.2 67 613-679 649-727 (818)
450 TIGR00618 sbcc exonuclease Sbc 99.0 7.8E-10 1.7E-14 136.5 10.2 77 596-672 948-1036(1042)
451 cd01131 PilT Pilus retraction 99.0 7.3E-10 1.6E-14 110.7 7.6 119 489-670 3-122 (198)
452 PRK00300 gmk guanylate kinase; 99.0 8.4E-10 1.8E-14 110.7 7.1 78 485-572 3-92 (205)
453 TIGR02169 SMC_prok_A chromosom 99.0 1E-09 2.2E-14 137.8 8.7 75 597-671 1073-1151(1164)
454 PRK06793 fliI flagellum-specif 98.9 3E-09 6.5E-14 116.8 10.7 165 458-676 130-302 (432)
455 PF06472 ABC_membrane_2: ABC t 98.9 4.3E-06 9.3E-11 88.3 33.2 226 150-380 42-272 (281)
456 cd01120 RecA-like_NTPases RecA 98.9 4.3E-09 9.4E-14 100.4 9.2 129 489-660 1-140 (165)
457 smart00382 AAA ATPases associa 98.9 5.6E-08 1.2E-12 89.5 16.3 117 486-656 1-125 (148)
458 PF13304 AAA_21: AAA domain; P 98.9 9.1E-09 2E-13 105.1 9.9 64 597-660 235-302 (303)
459 PRK02224 chromosome segregatio 98.8 8.3E-09 1.8E-13 125.8 8.6 75 597-671 780-868 (880)
460 cd03286 ABC_MSH6_euk MutS6 hom 98.8 2.5E-08 5.4E-13 100.9 10.5 133 473-663 16-159 (218)
461 PRK10246 exonuclease subunit S 98.8 1.5E-08 3.2E-13 124.7 10.0 76 596-671 947-1032(1047)
462 PRK06067 flagellar accessory p 98.7 1.1E-07 2.4E-12 97.6 12.9 148 483-671 21-187 (234)
463 PRK06002 fliI flagellum-specif 98.7 2E-08 4.3E-13 110.5 7.2 85 457-544 138-229 (450)
464 PRK13891 conjugal transfer pro 98.6 6E-07 1.3E-11 108.3 17.0 54 609-662 680-735 (852)
465 PF13748 ABC_membrane_3: ABC t 98.6 0.0001 2.2E-09 73.9 29.2 221 130-381 5-225 (237)
466 cd01130 VirB11-like_ATPase Typ 98.6 8.9E-08 1.9E-12 94.7 6.4 81 475-558 13-96 (186)
467 PRK07196 fliI flagellum-specif 98.6 5.4E-08 1.2E-12 107.1 5.0 82 474-556 143-234 (434)
468 PRK01889 GTPase RsgA; Reviewed 98.5 4.9E-08 1.1E-12 106.2 3.5 80 476-558 184-263 (356)
469 PRK06995 flhF flagellar biosyn 98.5 1.1E-07 2.4E-12 106.1 5.6 144 479-657 248-402 (484)
470 TIGR02524 dot_icm_DotB Dot/Icm 98.5 2.2E-07 4.8E-12 100.8 7.0 88 485-574 132-233 (358)
471 TIGR01420 pilT_fam pilus retra 98.5 4.2E-07 9.2E-12 98.6 9.2 122 484-668 119-241 (343)
472 COG3910 Predicted ATPase [Gene 98.5 1.7E-06 3.6E-11 83.2 11.9 84 598-683 129-214 (233)
473 cd01125 repA Hexameric Replica 98.5 2.8E-07 6.1E-12 94.9 6.9 45 612-657 107-159 (239)
474 PRK10078 ribose 1,5-bisphospho 98.5 3.8E-07 8.3E-12 90.2 7.5 55 487-544 2-56 (186)
475 TIGR00611 recf recF protein. A 98.4 2.3E-07 5.1E-12 101.2 6.4 63 597-661 274-345 (365)
476 TIGR02655 circ_KaiC circadian 98.4 1.1E-07 2.4E-12 107.8 1.0 156 483-670 17-190 (484)
477 PRK08149 ATP synthase SpaL; Va 98.4 4E-07 8.6E-12 100.2 5.3 69 474-543 139-214 (428)
478 PRK09825 idnK D-gluconate kina 98.3 5.4E-07 1.2E-11 88.3 4.3 66 486-557 2-69 (176)
479 PLN03210 Resistant to P. syrin 98.3 2.2E-06 4.7E-11 107.3 9.5 44 479-522 199-243 (1153)
480 TIGR03881 KaiC_arch_4 KaiC dom 98.3 1E-06 2.2E-11 90.0 5.4 57 483-543 16-76 (229)
481 TIGR03263 guanyl_kin guanylate 98.2 7.2E-07 1.6E-11 87.4 3.8 77 487-573 1-89 (180)
482 PF09818 ABC_ATPase: Predicted 98.2 3.6E-06 7.8E-11 91.3 9.4 172 464-675 227-417 (448)
483 TIGR00101 ureG urease accessor 98.2 1.9E-06 4.1E-11 86.2 6.6 104 489-603 3-108 (199)
484 PRK13898 type IV secretion sys 98.2 2.6E-05 5.7E-10 94.0 17.5 189 479-671 438-709 (800)
485 TIGR02680 conserved hypothetic 98.2 1.8E-06 4E-11 108.7 7.7 62 595-658 1244-1317(1353)
486 PF05992 SbmA_BacA: SbmA/BacA- 98.2 0.012 2.7E-07 61.6 35.3 239 181-436 60-311 (315)
487 cd02023 UMPK Uridine monophosp 98.2 1.6E-06 3.4E-11 86.6 4.9 108 489-631 1-113 (198)
488 TIGR01026 fliI_yscN ATPase Fli 98.2 1E-05 2.2E-10 90.0 11.5 174 474-680 151-343 (440)
489 COG0419 SbcC ATPase involved i 98.2 4.2E-06 9E-11 102.3 9.1 76 597-672 814-898 (908)
490 PLN02796 D-glycerate 3-kinase 98.2 7E-07 1.5E-11 95.2 2.0 62 474-535 79-151 (347)
491 PRK15494 era GTPase Era; Provi 98.2 1.3E-06 2.9E-11 94.5 3.9 57 453-511 13-76 (339)
492 TIGR02322 phosphon_PhnN phosph 98.1 3.3E-06 7E-11 82.8 6.3 62 487-549 1-78 (179)
493 cd00009 AAA The AAA+ (ATPases 98.1 1.3E-05 2.9E-10 74.2 10.1 54 604-658 72-131 (151)
494 cd00071 GMPK Guanosine monopho 98.1 1.2E-06 2.6E-11 82.2 2.8 74 489-572 1-87 (137)
495 PRK06315 type III secretion sy 98.1 2.2E-06 4.8E-11 94.7 5.1 84 474-558 152-253 (442)
496 TIGR00235 udk uridine kinase. 98.1 1.9E-06 4.2E-11 86.7 2.9 43 485-548 4-46 (207)
497 TIGR02903 spore_lon_C ATP-depe 98.1 9.3E-06 2E-10 94.5 8.6 109 487-643 175-291 (615)
498 PF13558 SbcCD_C: Putative exo 98.0 6E-06 1.3E-10 71.5 5.0 50 594-643 28-90 (90)
499 PRK03846 adenylylsulfate kinas 98.0 3.4E-06 7.3E-11 84.3 3.6 56 485-544 22-78 (198)
500 COG3044 Predicted ATPase of th 98.0 3.9E-05 8.4E-10 81.7 11.6 157 482-675 238-412 (554)
No 1
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-142 Score=1236.43 Aligned_cols=579 Identities=58% Similarity=0.943 Sum_probs=560.7
Q ss_pred CchhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005314 119 TEVPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPA-DELRKDTDFWALMYLFLAIACLLAHPLR 197 (703)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (703)
.+.++++++++++|+|+++++|++++++.|+.+|+++++++.++..|+.++ +........|+++|++++++.+++++++
T Consensus 648 ~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q 727 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQ 727 (1228)
T ss_pred ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999998653 4455556679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 198 SYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEA 277 (703)
Q Consensus 198 ~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 277 (703)
+|++.++|++++.|+|.++|+++++++++|||+++|+ |.+.+|+.+|+..++.++++.+..+++++.+++++++++|++
T Consensus 728 ~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~ 806 (1228)
T KOG0055|consen 728 HYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIY 806 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHH
Q 005314 278 NWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIK 357 (703)
Q Consensus 278 ~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~ 357 (703)
+|+|+++++++.|++++..+.+.++++++..+..+++++.++++.|+++|||||++|+.|+++++.|.+.++++.+...|
T Consensus 807 ~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~ 886 (1228)
T KOG0055|consen 807 GWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFK 886 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005314 358 QGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILD 437 (703)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~ 437 (703)
.+++.|+.+++++++.+++++++||||++++.+|++++.+++.+++++.+....+++..+++|++.+|+.++.++|.++|
T Consensus 887 ~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~d 966 (1228)
T KOG0055|consen 887 RGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILD 966 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCe
Q 005314 438 RKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGH 517 (703)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~ 517 (703)
++++++++++.+...+..+|+|+|+||+|+||.||+.+||+|+||+|++||++||||||||||||++.||+|||||++|.
T Consensus 967 r~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~ 1046 (1228)
T KOG0055|consen 967 RKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGK 1046 (1228)
T ss_pred CCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 99988876645544567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCC
Q 005314 518 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGI 597 (703)
Q Consensus 518 I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 597 (703)
|.|||+||++++++|||++||+|+|||.||++||||||+|| ..+++++||++|||.||+|+||.+||+||||.|||+|.
T Consensus 1047 V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG-~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1047 VKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYG-SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred EEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhcc-CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 99999999999999999999999999999999999999999 54599999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEe
Q 005314 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEK 677 (703)
Q Consensus 598 ~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~ 677 (703)
||||||||||||||||+|||+||||||||||||.+||+.||++|++++.|||+|+|||||||+++||.|+|++||+|+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhccCCcHHHHHHHhhhc
Q 005314 678 GKHETLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 678 Gth~eLl~~~~g~Y~~l~~~q~~ 700 (703)
|||+||+++ +|.|++|++.|..
T Consensus 1206 GtH~~L~~~-~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1206 GTHDELLAK-RGIYFRLVQLQSS 1227 (1228)
T ss_pred ccHHHHHhC-CCchHHHhhhccC
Confidence 999999995 9999999999864
No 2
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-128 Score=1070.30 Aligned_cols=577 Identities=38% Similarity=0.606 Sum_probs=546.4
Q ss_pred CchhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 119 TEVPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRS 198 (703)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (703)
....++|++.+.+|+|+++..+.++.++......+.|.+.+.++|.+... .+......-.+++++++.++..+++.++.
T Consensus 131 ~~~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~-~~~~~~~~~~~~~l~~l~~~~a~~~~~r~ 209 (716)
T KOG0058|consen 131 NHTLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEG-DDSADALKRACTILLGLFLIGALANAIRG 209 (716)
T ss_pred chhHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33478899999999999999999999999999999999999999998762 11122333445566677888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 199 YFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEAN 278 (703)
Q Consensus 199 ~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 278 (703)
+++..+++++..++|..+|+++++++++|||+ |.+|++++|+++|+..+.+.+...+...+.+.+..++++++||+++
T Consensus 210 ~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 210 GLLQYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 99999999999999999999999999999995 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHH
Q 005314 279 WQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQ 358 (703)
Q Consensus 279 ~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~ 358 (703)
|+|+++.++.+|++.+...++.++.++.+++.+++.+++++.+.|.++++||||+|+.|+++.++|.+..++..+...|.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005314 359 GLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDR 438 (703)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~ 438 (703)
+...++.+..+++..++..+.+++||++++..|++|.|.+.+|+.|......++..+..+++++.++..|.+|+|+++|+
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE
Q 005314 439 KSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518 (703)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I 518 (703)
+|.+..+ ....+ ....|.|+|+||+|+||.||+.+||+|+||+|+|||+||+||||||||||+++||+|||+|++|+|
T Consensus 448 ~P~i~~~-G~~~p-~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 448 KPRIPLT-GTLAP-DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCCCC-Ccccc-ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 9987654 22122 257899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCC
Q 005314 519 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQ 598 (703)
Q Consensus 519 ~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 598 (703)
++||+||++++..|||++||+|.|||.||++||+|||+|| .+++++|||++||++||+||||..+|+||||.|||+|.+
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG-~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYG-LDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcC-CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 9999999999999999999999999999999999999999 558999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEec
Q 005314 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 599 LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~G 678 (703)
|||||||||||||||+|||+||||||||||||+|||..|+++|++.+++||||+|||||||+++||+|+|+++|+|+|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhccCCcHHHHHHHhhhcc
Q 005314 679 KHETLVHVKDGIYASLVALQTSV 701 (703)
Q Consensus 679 th~eLl~~~~g~Y~~l~~~q~~~ 701 (703)
+|+|||++++|.|++|++.|...
T Consensus 685 ~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 685 THDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred cHHHHhhCcccHHHHHHHHhccc
Confidence 99999998779999999998643
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.1e-115 Score=1010.42 Aligned_cols=576 Identities=43% Similarity=0.744 Sum_probs=546.1
Q ss_pred chhHHHHhHhhCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005314 120 EVPLCRLASLNKP-EIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPAD-ELRKDTDFWALMYLFLAIACLLAHPLR 197 (703)
Q Consensus 120 ~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (703)
..++..++++... ++..+++|++++++.|+..|+..++++++++.+..... ...+....+++.|+.++++.++..+++
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q 91 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQ 91 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778886654 57778899999999999999999999999998865321 112355667888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 198 SYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEA 277 (703)
Q Consensus 198 ~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 277 (703)
..++.+.|+|...++|...++.+||++++|||. +.+|++..++++|++.+++.+++-++.+++.+.++++++++.|+.
T Consensus 92 ~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~--~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 92 VSCWMRTGERQTARIRSKYLKAILRQDIGWFDT--NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccceeec--ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 566999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHH
Q 005314 278 NWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIK 357 (703)
Q Consensus 278 ~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~ 357 (703)
+|+|+++++.+.|++.++..+..+.+.+...+.++.++++.+++.|.+.++|||.+|+.|++..++|.+.++...+...+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005314 358 QGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILD 437 (703)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~ 437 (703)
.+.+.|+..++.+++.++++++.+|||+.++..+..+.|+++.++..+......+++....+..+.++..++.+|+++++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCe
Q 005314 438 RKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGH 517 (703)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~ 517 (703)
+.+++++....+......+|.|+|+||.|+||+|||.+||+|+||+|++||+|||||+|||||||+++||+|||||++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 99988876544434456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCC
Q 005314 518 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGI 597 (703)
Q Consensus 518 I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 597 (703)
|+|||.|+++++.+|||++||+|+|||.||++||+|||+|| ++++|++|+.+|||+||+|+||..||+||||.|||+|.
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G-~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYG-KPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcC-CCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 99999999999999999999999999999999999999999 77999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEe
Q 005314 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEK 677 (703)
Q Consensus 598 ~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~ 677 (703)
||||||||||||||||+|||+||||||||||||+++|+.||++|+++++|||+|+||||||||++||+|+||++|+|||.
T Consensus 489 qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhccCCcHHHHHHHhhh
Q 005314 678 GKHETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 678 Gth~eLl~~~~g~Y~~l~~~q~ 699 (703)
|+|+||++. +|.|++|++.|.
T Consensus 569 G~h~ELi~~-~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 569 GTHDELIAL-GGIYSSLVRLQE 589 (1228)
T ss_pred cCHHHHHhc-cchHHHHHHHHh
Confidence 999999997 799999999884
No 4
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-109 Score=1028.05 Aligned_cols=576 Identities=31% Similarity=0.509 Sum_probs=509.9
Q ss_pred hHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 122 PLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFF 201 (703)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (703)
.+++++++.+++++.++++++++++.+++.|++|++++.+++.++.. .........|++++++++++.+++.+++.|+.
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~ 890 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYN 890 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888899999999999999999999999999987642 22233455788888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 202 AVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQL 281 (703)
Q Consensus 202 ~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l 281 (703)
.++++++..++|..+|++++++|++||+++++++|++++|+++|++.++.++...+..++..++.++++++++|+++|.+
T Consensus 891 ~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l 970 (1466)
T PTZ00265 891 NVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIV 970 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH---------------HHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHH
Q 005314 282 ALIVLVLVPLLVLNGYAHMKFLKGFSA---------------DSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQK 346 (703)
Q Consensus 282 alv~l~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~ 346 (703)
+++++++++++........+....... ...+..++....+.|+++|+++||+|+.|+++.++|++
T Consensus 971 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~ 1050 (1466)
T PTZ00265 971 AAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEK 1050 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHH
Confidence 888765554443332221121111000 12334667788999999999999999999999999999
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 347 KCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAK 426 (703)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (703)
..+...+...+...+.++.+++++++.++..++++|+|++++.+|.+++|+++++++++.+...++..+..+++++.+++
T Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~ 1130 (1466)
T PTZ00265 1051 AIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAK 1130 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777766677888999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCCCCcc---ccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHH
Q 005314 427 SAIASVYAILDRKSKIDSSDESGTT---IENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTV 503 (703)
Q Consensus 427 ~~~~~i~~il~~~~~~~~~~~~~~~---~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL 503 (703)
.+++|++++++.+++++..+..... .+...+.|+|+||+|+||++|+.+||+|+||+|+||+++||||+||||||||
T Consensus 1131 ~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl 1210 (1466)
T PTZ00265 1131 LSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTV 1210 (1466)
T ss_pred HHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHH
Confidence 9999999999987654321111111 1234578999999999998777789999999999999999999999999999
Q ss_pred HHhHcCCCCC------------------------------------------------------CCCeEEECCeeCCCCC
Q 005314 504 ISLLQRFYDP------------------------------------------------------DTGHITLDGVEIQKLQ 529 (703)
Q Consensus 504 ~~lL~g~y~p------------------------------------------------------~~G~I~idG~di~~~~ 529 (703)
++||+|||+| ++|+|++||+|+++++
T Consensus 1211 ~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~ 1290 (1466)
T PTZ00265 1211 MSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYN 1290 (1466)
T ss_pred HHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCC
Confidence 9999999999 6999999999999999
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
.++||++||||+|||+||+|||||||+|| .++++++||++||+.|++||||++||+||||.|||+|.+|||||||||||
T Consensus 1291 ~~~lR~~i~~V~Qep~LF~gTIreNI~~g-~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaI 1369 (1466)
T PTZ00265 1291 LKDLRNLFSIVSQEPMLFNMSIYENIKFG-KEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAI 1369 (1466)
T ss_pred HHHHHhhccEeCCCCccccccHHHHHhcC-CCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999 56899999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeC----CEEE-EecChhH
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKN----GVIA-EKGKHET 682 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~----G~Iv-e~Gth~e 682 (703)
||||+|||+||||||||||||++||+.|+++|++++ ++||+|+||||++++++||+|+||++ |+++ |+|||+|
T Consensus 1370 ARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265 1370 ARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHH
Confidence 999999999999999999999999999999999984 69999999999999999999999999 9955 9999999
Q ss_pred HhccCCcHHHHHHHhhh
Q 005314 683 LVHVKDGIYASLVALQT 699 (703)
Q Consensus 683 Ll~~~~g~Y~~l~~~q~ 699 (703)
|+++++|.|++||+.|.
T Consensus 1450 Ll~~~~g~Y~~l~~~~~ 1466 (1466)
T PTZ00265 1450 LLSVQDGVYKKYVKLAK 1466 (1466)
T ss_pred HHhcCCChHHHHHhhcC
Confidence 99733999999998873
No 5
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.6e-108 Score=945.35 Aligned_cols=573 Identities=32% Similarity=0.484 Sum_probs=532.9
Q ss_pred CCchhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005314 118 PTEVPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLR 197 (703)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (703)
.++..+.|++....++|+.+.-.++.+++..++..+.|+++..++|.+.-. .........++.++++++...++..+|
T Consensus 137 ~~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~--~~~~tL~vl~ig~~~~~l~~~~l~~lr 214 (709)
T COG2274 137 IPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD--ASRSTLTVLAIGLLLAALFEALLRLLR 214 (709)
T ss_pred ccccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888888888887777777777777777888888888887632 223344556667777888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 198 SYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEA 277 (703)
Q Consensus 198 ~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 277 (703)
.|.....+.++...+-..+|+|++++|+.||++ +++|++++|+ +|.+.++++++......+..+...++.+++++++
T Consensus 215 ~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~--r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~y 291 (709)
T COG2274 215 TYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK--RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLY 291 (709)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccC--CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 7999999998 7999999999998888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHH
Q 005314 278 NWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIK 357 (703)
Q Consensus 278 ~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~ 357 (703)
+|.|++++++.+|++++..++..+.+++..++..+..++..+.+.|++.|++|||+.+.|+++..+|++...+..+..++
T Consensus 292 s~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~ 371 (709)
T COG2274 292 SWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFK 371 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005314 358 QGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILD 437 (703)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~ 437 (703)
......+...+..++..++.++++|+|+++|.+|++|+|.++++.++...+..|+..+..++.++++++.+.+|+.++++
T Consensus 372 ~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~ 451 (709)
T COG2274 372 TEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILD 451 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCe
Q 005314 438 RKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGH 517 (703)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~ 517 (703)
.++|.+.+.. ....+...|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|+|+|+|++|+
T Consensus 452 ~~~E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~ 529 (709)
T COG2274 452 TPPEQEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529 (709)
T ss_pred CCcccccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 9887543331 22345567999999999999865 357999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCC
Q 005314 518 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGI 597 (703)
Q Consensus 518 I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 597 (703)
|++||.|+.++++.++|++||||+||++||+|||+|||++| .+++++||+++||+.|++|+||.+||+||||+|||+|.
T Consensus 530 I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~-~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~ 608 (709)
T COG2274 530 ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALG-NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA 608 (709)
T ss_pred EEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcC-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 99999999999999999999999999999999999999999 77899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEe
Q 005314 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEK 677 (703)
Q Consensus 598 ~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~ 677 (703)
+|||||||||||||||++||+||||||||||||++||+.|.+.|.+..++||+|+||||++++++||||+|||+|||+|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhccCCcHHHHHHHhhh
Q 005314 678 GKHETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 678 Gth~eLl~~~~g~Y~~l~~~q~ 699 (703)
|+|+||++. +|.|+++|+.|.
T Consensus 689 gs~~ell~~-~g~y~~l~~~q~ 709 (709)
T COG2274 689 GSHEELLAQ-GGLYARLYQQQE 709 (709)
T ss_pred CCHHHHHHh-cChHHHHHhccC
Confidence 999999997 999999998873
No 6
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.3e-102 Score=901.35 Aligned_cols=570 Identities=23% Similarity=0.285 Sum_probs=502.3
Q ss_pred hhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYF 200 (703)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (703)
..++|++++.+|+++.++++++++++..++.++.|+++..++|.+..+... ......++.+++++.++..++.+++.++
T Consensus 8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK11174 8 ELTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERV 86 (588)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999976522111 1122334444555666777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 201 FAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQ 280 (703)
Q Consensus 201 ~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 280 (703)
..+.+.++..++|.++|+|++++|+.||++ +++|++++|+++|++.++.++...+..++..++.+++.++++++++|+
T Consensus 87 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 87 GFKAGQHIRQQIRQQVLDKLQQLGPAWIQG--KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcc--CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985 799999999999999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHH
Q 005314 281 LALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGL 360 (703)
Q Consensus 281 lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 360 (703)
+++++++++|++++......++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..+
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888899999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 361 IGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEV---------FRVFFALSMAATGLSQSGILAPEASRAKSAIAS 431 (703)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (703)
..+....+..++..+..+++++++++.+. |.+|+|++ +.++++...+..|+..+...+..+.++..+++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777666556555555443 88888764 122244455678899999999999999999999
Q ss_pred HHHHhcccccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 432 VYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 432 i~~il~~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+.++++.+++......... .....++|+|+||+|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|
T Consensus 324 i~~~l~~~~~~~~~~~~~~-~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 324 LVTFLETPLAHPQQGEKEL-ASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHcCCCcccCCCcccc-CCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 9999987653221111101 1112357999999998863 357999999999999999999999999999999999999
Q ss_pred CCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccch
Q 005314 512 DPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTI 591 (703)
Q Consensus 512 ~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~ 591 (703)
|++|+|++||+|+++++.+++|++|+||||||+||+|||||||+|| .++++++|+++||+.|++|+||++||+||||.
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g-~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~ 478 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLG-NPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcC-CCCCCHHHHHHHHHHhCHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999 56899999999999999999999999999999
Q ss_pred hcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q 005314 592 VGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKN 671 (703)
Q Consensus 592 vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~ 671 (703)
|||+|.+|||||||||||||||++||+||||||||||||++||+.|+++|.++.++||+|+||||++++++||+|+||++
T Consensus 479 vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CEEEEecChhHHhccCCcHHHHHHHhhhc
Q 005314 672 GVIAEKGKHETLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 672 G~Ive~Gth~eLl~~~~g~Y~~l~~~q~~ 700 (703)
|+|+|+|+|+||+++ +|.|+++++.|.+
T Consensus 559 G~i~e~G~~~eL~~~-~~~y~~l~~~q~~ 586 (588)
T PRK11174 559 GQIVQQGDYAELSQA-GGLFATLLAHRQE 586 (588)
T ss_pred CeEeecCCHHHHHhc-chHHHHHHHHhhc
Confidence 999999999999986 9999999998865
No 7
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.5e-101 Score=886.16 Aligned_cols=564 Identities=36% Similarity=0.574 Sum_probs=512.4
Q ss_pred hHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 122 PLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFF 201 (703)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (703)
.+++++.+.+ ++ .++++.++.++..++....+.++..+++.+... ......+..+++++.++..++.++..++.
T Consensus 3 ~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 76 (567)
T COG1132 3 LLRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----LGELLELLLLLLLLALLGGVLRALQSYLG 76 (567)
T ss_pred hHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666 77 888888888888888888888999999887611 12222334444455556777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 202 AVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQL 281 (703)
Q Consensus 202 ~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l 281 (703)
.+.+.++..++|..+|++++++|++||++ +++|++++|+++|++.++.++......+...++.+++.+++++..+|.+
T Consensus 77 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (567)
T COG1132 77 SRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRL 154 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 88889999999999999999999999985 6799999999999999999999986666667888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHH
Q 005314 282 ALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLI 361 (703)
Q Consensus 282 alv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 361 (703)
++++++.+|++.+...+..++.++.....++..++..+.+.|.++|+++||+|+.++...+++++..+...+...+....
T Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (567)
T COG1132 155 ALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRL 234 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888887778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005314 362 GGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSK 441 (703)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~ 441 (703)
.+...++..++..+..++++++|++++..+.+++|.+++++.+...+..|+..+......+..+..+++|++++++.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 314 (567)
T COG1132 235 EALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPE 314 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred CCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC
Q 005314 442 IDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD 521 (703)
Q Consensus 442 ~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id 521 (703)
....... .....++|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||++++|+|||+|++|+|++|
T Consensus 315 ~~~~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~id 389 (567)
T COG1132 315 VEDPPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILID 389 (567)
T ss_pred ccCCCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEEC
Confidence 3322211 2234578999999999984 4689999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 522 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 522 G~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
|+||++++.++||++|++|||||+||+|||+|||.|| .+++|+||+++|||.|++||||++||+||||.|||+|.+|||
T Consensus 390 g~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g-~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 390 GIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALG-RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CEehhhcCHHHHHHhccEEcccceeecccHHHHHhcC-CCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 9999999999999999999999999999999999999 667999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChh
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~ 681 (703)
|||||||||||++|||||||||||||+||++||+.|++++.++.++||+|+||||++|+++||+|+|||+|+|+|.|+|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhccCCcHHHHHHHhhhc
Q 005314 682 TLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 682 eLl~~~~g~Y~~l~~~q~~ 700 (703)
||+++ +|.|++||+.|..
T Consensus 549 eLl~~-~g~y~~l~~~~~~ 566 (567)
T COG1132 549 ELLAK-GGLYARLYQAQGG 566 (567)
T ss_pred HHHHc-CCHHHHHHHHhhc
Confidence 99997 9999999998864
No 8
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.1e-99 Score=890.78 Aligned_cols=567 Identities=34% Similarity=0.495 Sum_probs=514.0
Q ss_pred CchhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 119 TEVPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRS 198 (703)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (703)
....+++++++.+++|+.++.++++.++..++..+.|++++.++|.+....+ ......+.++++++.++..++.+++.
T Consensus 145 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (711)
T TIGR00958 145 TADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRG 222 (711)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999888888899999999998754221 11122223334445666778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 199 YFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEAN 278 (703)
Q Consensus 199 ~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 278 (703)
+++.+.+.++..++|..+|++++++|+.||++ +++|++++|+++|++.++..+...+..++..++.+++.+++++.++
T Consensus 223 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s 300 (711)
T TIGR00958 223 GSFNYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLS 300 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999985 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHH
Q 005314 279 WQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQ 358 (703)
Q Consensus 279 ~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~ 358 (703)
|.+++++++.+|++++...+..++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+.
T Consensus 301 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 380 (711)
T TIGR00958 301 PRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRK 380 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888889899899999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005314 359 GLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDR 438 (703)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~ 438 (703)
....+....+..++..+..++++++|++++.+|.+|+|++++++.+...+..++..+...+.++.++..+.+|++++++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~ 460 (711)
T TIGR00958 381 ALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDR 460 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88888777788888888888899999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE
Q 005314 439 KSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518 (703)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I 518 (703)
+++.+.... ..+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 461 ~~~~~~~~~--~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 538 (711)
T TIGR00958 461 KPNIPLTGT--LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538 (711)
T ss_pred CCCCCCCCC--CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 765332111 111234578999999999997766789999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCC
Q 005314 519 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQ 598 (703)
Q Consensus 519 ~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 598 (703)
++||+|+++++.+++|++|+||+|||+||++||||||+|| .++++++++++|++.+++++||++||+||||.+||+|.+
T Consensus 539 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g-~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYG-LTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred EECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcC-CCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 9999999999999999999999999999999999999999 567899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEec
Q 005314 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 599 LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~G 678 (703)
||||||||||||||+++||+||||||||||||+++|+.|++ ....++||+|+||||+++++.||+|+||++|+|+|+|
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999999999999 3345789999999999999999999999999999999
Q ss_pred ChhHHhccCCcHHHHHH
Q 005314 679 KHETLVHVKDGIYASLV 695 (703)
Q Consensus 679 th~eLl~~~~g~Y~~l~ 695 (703)
+|+||+++ +|.|++|+
T Consensus 696 t~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 696 THKQLMED-QGCYKHLV 711 (711)
T ss_pred CHHHHHhC-CCchHhcC
Confidence 99999996 89999874
No 9
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.3e-98 Score=881.45 Aligned_cols=564 Identities=26% Similarity=0.332 Sum_probs=509.6
Q ss_pred hhHHHHhHh-hCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASL-NKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSY 199 (703)
Q Consensus 121 ~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (703)
..+++++++ .+++++.++..++++++..++..+.|+++..++|.+....+ ......++++++++.++..++.+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 198 (686)
T TIGR03797 121 LGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSLLVQIALALLAAAVGAAAFQLAQSL 198 (686)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665 67788888887888888888888888899999988753211 122333455555666777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 200 FFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANW 279 (703)
Q Consensus 200 ~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 279 (703)
+..+++.++..++|..+|+|++++|+.||++ +++|++++|+. |.+.+++++...+...+..+..++++++++++++|
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (686)
T TIGR03797 199 AVLRLETRMDASLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSW 275 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985 79999999996 89999998888777777777777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHH
Q 005314 280 QLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQG 359 (703)
Q Consensus 280 ~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~ 359 (703)
.+++++++++|+++++..+..+..++...+..+..++..+.+.|.++|+++||+++.|+++.++|++..++..+...+..
T Consensus 276 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 355 (686)
T TIGR03797 276 KLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQ 355 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005314 360 LIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRK 439 (703)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~ 439 (703)
....+...+..++..+..++++++|++++.+|.+|+|.++++.++...+..|+.++...+..++++..+++|+.++++.+
T Consensus 356 ~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 435 (686)
T TIGR03797 356 RIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEAL 435 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEE
Q 005314 440 SKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHIT 519 (703)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~ 519 (703)
++.+... .......+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 436 ~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 511 (686)
T TIGR03797 436 PEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 (686)
T ss_pred cccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 5432211 1112245689999999999754 46799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCC
Q 005314 520 LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQL 599 (703)
Q Consensus 520 idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~L 599 (703)
+||+|+++++.+++|++||||||||+||+|||||||++| .+ ++++++++||+.+++++||++||+||||.+||+|.+|
T Consensus 512 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~-~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~L 589 (686)
T TIGR03797 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGG-AP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTL 589 (686)
T ss_pred ECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcC-CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 999999999999999999999999999999999999999 55 8999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecC
Q 005314 600 SGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 600 SGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gt 679 (703)
||||||||||||||+++|+|||||||||+||+++|+.|+++|++. ++|+|+||||+++++.||+|+||++|+|+|.|+
T Consensus 590 SGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~ 667 (686)
T TIGR03797 590 SGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGT 667 (686)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999886 689999999999999999999999999999999
Q ss_pred hhHHhccCCcHHHHHHHhh
Q 005314 680 HETLVHVKDGIYASLVALQ 698 (703)
Q Consensus 680 h~eLl~~~~g~Y~~l~~~q 698 (703)
|+||+++ +|.|++|++.|
T Consensus 668 ~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 668 YDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred HHHHHhC-CcHHHHHHHhc
Confidence 9999996 99999999876
No 10
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.5e-98 Score=881.98 Aligned_cols=566 Identities=25% Similarity=0.361 Sum_probs=512.6
Q ss_pred hhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYF 200 (703)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (703)
..+++++.+.+++++.++..++++++..++..+.|+++..++|.+.... .......++++++++.++..++.+++.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (708)
T TIGR01193 142 NSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK--MMGTLGIISIGLIIAYIIQQILSYIQIFL 219 (708)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888899998888888888888888888999999999875321 11222233444455566677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 201 FAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQ 280 (703)
Q Consensus 201 ~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 280 (703)
..+++.++..++|..+|+|++++|+.||++ +++|++++|++ |.+.+++++.......+..++.+++.++++++++|+
T Consensus 220 ~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (708)
T TIGR01193 220 LNVLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML 296 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999985 79999999997 999999988888777777777777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHH
Q 005314 281 LALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGL 360 (703)
Q Consensus 281 lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 360 (703)
+++++++++|+++++.++..+..++...+..+..++..+.+.|.++|+++||+|+.|+.+.++|++...+..+...+...
T Consensus 297 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 376 (708)
T TIGR01193 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK 376 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005314 361 IGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKS 440 (703)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~ 440 (703)
..+....+..++..+..++++++|++++.+|.+|+|.++++.++...+..|+.++..++..++.+..+.+|+.++++.++
T Consensus 377 ~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 456 (708)
T TIGR01193 377 ADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDS 456 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 98888888888888899999999999999999999999999999999999999999999999999999999999998766
Q ss_pred cCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE
Q 005314 441 KIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL 520 (703)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i 520 (703)
+...... ....+...+.|+|+||+|+|+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 457 e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 457 EFINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred ccccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 5332211 1112234578999999999974 357999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 521 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 521 dG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
||+|+++++.+++|++||||||||+||+|||||||++|.+++++++++++||+.+++++||.+||+||||.|||+|.+||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999999445799999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecCh
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth 680 (703)
||||||||||||++++|+|||||||||+||+++|+.|+++|.+. +++|+|+||||+++++.||+|+||++|+|+|.|+|
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~ 692 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSH 692 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred hHHhccCCcHHHHHHH
Q 005314 681 ETLVHVKDGIYASLVA 696 (703)
Q Consensus 681 ~eLl~~~~g~Y~~l~~ 696 (703)
+||+++ +|.|++||+
T Consensus 693 ~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 693 DELLDR-NGFYASLIH 707 (708)
T ss_pred HHHHhc-CCcHHHHhh
Confidence 999996 999999985
No 11
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.3e-97 Score=878.68 Aligned_cols=565 Identities=25% Similarity=0.322 Sum_probs=511.0
Q ss_pred hhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYF 200 (703)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (703)
..+++++.+.+++++.++..++++++..++..+.|+++..++|.+..... ......+++.++++.++..++.+++.++
T Consensus 140 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (710)
T TIGR03796 140 SLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDWLRPLLLGMGLTALLQGVLTWLQLYY 217 (710)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888777777777777777788889999987653211 1112233444555666778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 201 FAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQ 280 (703)
Q Consensus 201 ~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 280 (703)
..+++.++..++|..+|+|++++|++||++ +++|++++|+.+| +.+++++...+..++..++.+++.++++++++|.
T Consensus 218 ~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 218 LRRLQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985 7999999999888 6899999888888888998888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHH
Q 005314 281 LALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGL 360 (703)
Q Consensus 281 lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 360 (703)
+++++++++|+++++.++..+..++...+..+..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+...
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005314 361 IGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKS 440 (703)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~ 440 (703)
...+...+..++..+..++++++|++++.+|.+|+|.++++.++...+..|+..+...+..+.++..+++|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred cCCCCCC---C-Cccc-cCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCC
Q 005314 441 KIDSSDE---S-GTTI-ENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT 515 (703)
Q Consensus 441 ~~~~~~~---~-~~~~-~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~ 515 (703)
+...... . .... +...+.|+|+||+|+||+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5332210 0 0111 2345789999999999854 4679999999999999999999999999999999999999999
Q ss_pred CeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCC
Q 005314 516 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGER 595 (703)
Q Consensus 516 G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~ 595 (703)
|+|++||+|+++++.+++|++|+||||||+||+|||||||+++ .++++++++++||+.+++++||.+||+||||.+||+
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~-~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLW-DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCC-CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 9999999999999999999999999999999999999999999 567999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEE
Q 005314 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIA 675 (703)
Q Consensus 596 G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Iv 675 (703)
|.+||||||||||||||++++|+||||||||||||+++|+.|.+.|.+ .++|+|+||||+++++.||+|+||++|+|+
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999987 489999999999999999999999999999
Q ss_pred EecChhHHhccCCcHHHHHH
Q 005314 676 EKGKHETLVHVKDGIYASLV 695 (703)
Q Consensus 676 e~Gth~eLl~~~~g~Y~~l~ 695 (703)
|.|+|+||+++ +|.|++|+
T Consensus 691 ~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 691 QRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EecCHHHHHHc-CCcHHHHh
Confidence 99999999996 99999987
No 12
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.4e-97 Score=850.13 Aligned_cols=566 Identities=23% Similarity=0.278 Sum_probs=501.4
Q ss_pred HHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 123 LCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADE--LRKDTDFWALMYLFLAIACLLAHPLRSYF 200 (703)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (703)
+++++++.+++++.++++++++++..++....|++++.+++........ .......+.+.+++++++..++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778889998888889998888888888888899999865421110 00011112223444566777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 201 FAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQ 280 (703)
Q Consensus 201 ~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 280 (703)
.++.+.++..++|.++|+|++++|+.||++ +++|++++|+++|++.++.++...++.++..++.++++++++++++|+
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLT 161 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHH
Q 005314 281 LALIVLVLVPLLVLN-GYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQG 359 (703)
Q Consensus 281 lalv~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~ 359 (703)
+++++++++|+++++ .++..++.++..++.++..++....+.|.++|+++||+|+.|+++.++|++..++..+...+..
T Consensus 162 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (574)
T PRK11160 162 LALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQA 241 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888876554 4666777788888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005314 360 LIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSM-AATGLSQSGILAPEASRAKSAIASVYAILDR 438 (703)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~ 438 (703)
+..+...++.+++..+..++++++|++++ +|.+++|.+++++.+... ...++..+...+..+.++..+++|+.++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~ 320 (574)
T PRK11160 242 NLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQ 320 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998889999999885 899999999988766544 3457778888899999999999999999997
Q ss_pred cccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE
Q 005314 439 KSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518 (703)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I 518 (703)
+++.+...... .....+.|+|+||+|+||++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 321 ~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 321 KPEVTFPTTST--AAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCCCcccC--CCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 66532211111 11234689999999999854 3579999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCC
Q 005314 519 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQ 598 (703)
Q Consensus 519 ~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 598 (703)
++||+|+++++.+++|++|+||||||+||++||+|||++| .++++++++++|++.+++++||++ |+||||.|||+|.+
T Consensus 398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~ 475 (574)
T PRK11160 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLA-APNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475 (574)
T ss_pred EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcC-CCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence 9999999999999999999999999999999999999999 568999999999999999999999 99999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEec
Q 005314 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 599 LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~G 678 (703)
||||||||||||||++++|+|||||||||+||+++|+.|+++|.+..+++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhccCCcHHHHHHHh
Q 005314 679 KHETLVHVKDGIYASLVAL 697 (703)
Q Consensus 679 th~eLl~~~~g~Y~~l~~~ 697 (703)
+|+||+++ +|.|++||+.
T Consensus 556 ~~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 556 THQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred CHHHHHhc-CcHHHHHHhh
Confidence 99999996 9999999964
No 13
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.9e-96 Score=849.64 Aligned_cols=569 Identities=35% Similarity=0.498 Sum_probs=510.8
Q ss_pred HHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 123 LCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFA 202 (703)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (703)
+++++.+.+++++.+++.+++.++..+.....++++..+++....... ......+++++++++++..++.+++.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (582)
T PRK11176 13 FRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSVLKWMPLVVIGLMILRGITSFISSYCIS 90 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888887777777776666667777788888876653211 111222233344566677788889989999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 203 VAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLA 282 (703)
Q Consensus 203 ~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~la 282 (703)
+++.++...+|..+|++++++|+.+|++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++
T Consensus 91 ~~~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 168 (582)
T PRK11176 91 WVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHH
Q 005314 283 LIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIG 362 (703)
Q Consensus 283 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (703)
+++++++|+++++.+...+++++...+..+..++....+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..
T Consensus 169 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T PRK11176 169 LILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSAS 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 005314 363 GVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKI 442 (703)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~ 442 (703)
.+...+..++..+..++++++|++++.+|.+|+|++++++++...+..|+..+...+..+.+++.+++|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 328 (582)
T PRK11176 249 SISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99899999999899999999999999999999999999999999999999999999999999999999999999865442
Q ss_pred CCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC
Q 005314 443 DSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG 522 (703)
Q Consensus 443 ~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG 522 (703)
.... ...+...+.|+|+||+|+||++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 329 ~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 329 DEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred CCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 2111 1112234579999999999864 46799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 523 VEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 523 ~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
+|+++++.+++|++|+||||||++|++||||||++|++++++++++++|++.+++++||.+||+||||.+||+|.+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 99999999999999999999999999999999999954458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhH
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~e 682 (703)
|||||+|||||+++|+||||||||||||+++|+.|.++|.+..+++|+|+||||+++++.||+|++|++|+|+|+|+|++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhccCCcHHHHHHHhhhc
Q 005314 683 LVHVKDGIYASLVALQTS 700 (703)
Q Consensus 683 Ll~~~~g~Y~~l~~~q~~ 700 (703)
|+++ +|.|++|++.|..
T Consensus 565 l~~~-~~~y~~l~~~~~~ 581 (582)
T PRK11176 565 LLAQ-NGVYAQLHKMQFG 581 (582)
T ss_pred HHhC-CChHHHHHHHHhc
Confidence 9996 9999999987753
No 14
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.2e-96 Score=865.72 Aligned_cols=557 Identities=28% Similarity=0.411 Sum_probs=503.4
Q ss_pred hhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYF 200 (703)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (703)
..+++++.+.+++++.+...++++++..++..+.|+++..++|.+....+ ......++++++++.++..++.+++.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 210 (694)
T TIGR03375 133 RPKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FETLWVLAIGVALAIVFDFVLKTLRSYF 210 (694)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888888888888888899999987653211 1122233344444566677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 201 FAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQ 280 (703)
Q Consensus 201 ~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 280 (703)
..+.+.++..++|..+|+|++++|+.+ + ++++|++++|+ +|++.+++++...+...+..++.+++.++++++++|.
T Consensus 211 ~~~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (694)
T TIGR03375 211 LDVAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGP 286 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999997 4 36999999999 8999999998887777777777777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHH
Q 005314 281 LALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGL 360 (703)
Q Consensus 281 lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 360 (703)
+++++++++|+++++.++..++.++...+..+..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+...
T Consensus 287 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 366 (694)
T TIGR03375 287 LVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRF 366 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005314 361 IGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKS 440 (703)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~ 440 (703)
+.+....+.+++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+.++..+..+.+|+.++++.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 446 (694)
T TIGR03375 367 LSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPV 446 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE
Q 005314 441 KIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL 520 (703)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i 520 (703)
+..... .....+...+.|+|+||+|+||+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 447 e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 447 ERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred CCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 532211 111112335789999999999854 457999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 521 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 521 dG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
||+|+++++.+++|++|+||||||+||+|||+|||+++ .++++++++++|++.+++++||++||+||||.+||+|.+||
T Consensus 525 dg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 525 DGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALG-APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred CCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCC-CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 99999999999999999999999999999999999999 66799999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecCh
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth 680 (703)
||||||||||||++++|+|||||||||+||+++|+.|+++|.+..+++|+|+||||+++++.||+|+||++|+|+|+|+|
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~ 683 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPK 683 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred hHHhcc
Q 005314 681 ETLVHV 686 (703)
Q Consensus 681 ~eLl~~ 686 (703)
+||+++
T Consensus 684 ~eLl~~ 689 (694)
T TIGR03375 684 DQVLEA 689 (694)
T ss_pred HHHHHH
Confidence 999874
No 15
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-96 Score=795.73 Aligned_cols=554 Identities=27% Similarity=0.373 Sum_probs=507.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 138 LLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCF 217 (703)
Q Consensus 138 ~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~ 217 (703)
.+..+++++.+++...++++++..++.++... .......+...++++.++..++...+.....+.+.++...+|+.++
T Consensus 3 ~i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~--~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 3 VISALLAVLSGIAIIAQAALLADILTKLIEGQ--LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888999999998887632 1334455666667777888889999999999999999999999999
Q ss_pred HHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 218 EKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLNGY 297 (703)
Q Consensus 218 ~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~~~ 297 (703)
+|+.++++.|-.+ .++|++.+.+...++.++.+++.++|.+..+.+..++.++..|+++|.-+++++++.|+++++++
T Consensus 81 ~~l~~~gp~~~~~--~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi 158 (559)
T COG4988 81 DKLAKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI 158 (559)
T ss_pred HHHHhCChhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998874 68999999999999999999999999999999999898999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 298 AHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVY 377 (703)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (703)
+..+..++.++++...+.+.+..+.|.++|+.|+|.|+..+...+++.+..+++++..|+..++......+..|+.++..
T Consensus 159 lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi 238 (559)
T COG4988 159 LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI 238 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccccCCC
Q 005314 378 ACSFYAGARLVEA-GKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVK 456 (703)
Q Consensus 378 ~~~~~~g~~lv~~-g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~~~~ 456 (703)
+++..+.+..... |.+++...+.++....-++.|+.++++.+++...+..+.+.++.+++.+.+...............
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 8887666666666 899999999999999999999999999999999999999999999998765332221111111223
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
.+|.++|++|+||++ +++++|+||+++||+++||||+||||||||+++|+||++|++|+|++||+|+++++.+.||++
T Consensus 319 ~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 356666999999965 289999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 537 MGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 537 i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
+++|+|+|+||+|||||||+++ .++++|++|.+|++.+++.+|+.. |+|+||.+||+|.+|||||+||+|+||||+++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~-~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLA-RPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred eeeeCCCCccccccHHHHhhcc-CCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999 668999999999999999999999 99999999999999999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHH
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~ 696 (703)
++++|||||||+||.|||+.|+++|.++.++||+|+||||+..+++||+|+|||+|+++|+|+|++|+++ +|.|++|+.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~ 553 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLK 553 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 999999999
Q ss_pred hhhc
Q 005314 697 LQTS 700 (703)
Q Consensus 697 ~q~~ 700 (703)
+|..
T Consensus 554 ~q~~ 557 (559)
T COG4988 554 QQEG 557 (559)
T ss_pred HHhc
Confidence 8864
No 16
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.4e-95 Score=840.12 Aligned_cols=567 Identities=25% Similarity=0.349 Sum_probs=496.0
Q ss_pred hHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 122 PLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFF 201 (703)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (703)
.+++++.+.+++++.+++.++++++..++....|+++..++|......+........++++++++.++..++.+++.++.
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 10 TLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888888888999999999876532111011111223334445566777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 202 AVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQL 281 (703)
Q Consensus 202 ~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l 281 (703)
..++.++..++|..+|++++++|++||++ +++|++++|+++|++.++.++...+..++..+..+++.++++++++|.+
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985 7899999999999999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHH
Q 005314 282 ALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLI 361 (703)
Q Consensus 282 alv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 361 (703)
++++++++|++++...+..++.++...+..+..++....+.|.++|+++||+|+.|+++.++|.+..++..+...+..+.
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887777788888888888888899999999999999999999999999999999999988888887776
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005314 362 GGVA-FGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKS 440 (703)
Q Consensus 362 ~~~~-~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~ 440 (703)
.++. ..+..++..+..++++++++. +..|.+++|.++++.++...+..|+..+...+..+.++..+++|++++++.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6554 344444444443333333444 57899999999999999999999999999999999999999999999998654
Q ss_pred cCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE
Q 005314 441 KIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL 520 (703)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i 520 (703)
+... . . ......++|+|+||+|+||+ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 327 ~~~~-~-~--~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 327 QQYG-N-D--DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred ccCC-C-C--ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 3211 1 1 11223467999999999984 357999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 521 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 521 dG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
||+|+++++++++|++|+||||||+||+|||||||++| . +++++++++|++.+|++++|.+||+||||.+||+|.+||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~-~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG-R-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhC-C-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 99999999999999999999999999999999999999 4 689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecCh
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth 680 (703)
|||||||+|||||+++|+|||||||||+||+++|+.|++.|.++.++||+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhccCCcHHHHHHHhhhc
Q 005314 681 ETLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 681 ~eLl~~~~g~Y~~l~~~q~~ 700 (703)
+||+++ ++.|+++++.|..
T Consensus 559 ~~L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 559 QQLLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred HHHHhC-CCHHHHHHHHHhh
Confidence 999997 9999999998743
No 17
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-99 Score=790.01 Aligned_cols=548 Identities=29% Similarity=0.414 Sum_probs=462.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 005314 146 VLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFL--AIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYM 223 (703)
Q Consensus 146 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~ 223 (703)
+.-++....|++....++.+..|.....+....++.+.++- +-.+.+++.++++++..+.+...+++..++|+|+..+
T Consensus 226 i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~L 305 (790)
T KOG0056|consen 226 IGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNL 305 (790)
T ss_pred HHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhh
Confidence 33344455667778888887643211111111122222211 1223567888888888899999999999999999999
Q ss_pred CccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 224 EVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAF-EANWQLALIVLVLVPLLVLNGYAHMKF 302 (703)
Q Consensus 224 ~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~lalv~l~~~~l~~~~~~~~~~~ 302 (703)
++.|+-+ +.+|+++.-+.+..+.+. +.......+...+.-+++++++.+ .++|+.++++++++.++.........+
T Consensus 306 SlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeW 382 (790)
T KOG0056|consen 306 SLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEW 382 (790)
T ss_pred ceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehh
Confidence 9999975 789999998888887777 666666666666666666666554 579999999998888887765544444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 303 LKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFY 382 (703)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (703)
..++.++......+......|++-|.+|||-|++|+++.++|.++..++.+...|...-..+....-..+..+..++.-.
T Consensus 383 RTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsl 462 (790)
T KOG0056|consen 383 RTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSL 462 (790)
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhh
Confidence 44555555556666667788999999999999999999999999999998888776655555555555555555555555
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccccCCCCcEEEE
Q 005314 383 AGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQ 462 (703)
Q Consensus 383 ~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~~I~~~ 462 (703)
+.+++|..+.+++|+++.+..|+....+|+.-++..+..+++....++++|++++.+++... .+...+....+|.|+|+
T Consensus 463 l~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd-~P~a~pl~~~~G~i~fs 541 (790)
T KOG0056|consen 463 LCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD-LPGAPPLKVTQGKIEFS 541 (790)
T ss_pred eeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc-CCCCCCccccCCeEEEE
Confidence 56677889999999999999999999999999999999999999999999999998877543 22233344457999999
Q ss_pred EEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEcc
Q 005314 463 HITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQ 542 (703)
Q Consensus 463 ~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 542 (703)
||+|.|+ |.+++|+|+||+++|||++|+|||||+||||++++|.||||.++|.|+|||+||+.++..+||++||+|||
T Consensus 542 nvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQ 619 (790)
T KOG0056|consen 542 NVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQ 619 (790)
T ss_pred EeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccC
Confidence 9999997 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEe
Q 005314 543 EPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLL 622 (703)
Q Consensus 543 e~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlL 622 (703)
|..|||+||..||.|| +++|++||+.+|||+|++||-|..+|+||+|.|||||-.||||||||+||||+++|+|.|++|
T Consensus 620 DtvLFNdTI~yNIrya-k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlL 698 (790)
T KOG0056|consen 620 DTVLFNDTILYNIRYA-KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILL 698 (790)
T ss_pred cceeecceeeeheeec-CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEE
Confidence 9999999999999999 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhhhc
Q 005314 623 DEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 623 DEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q~~ 700 (703)
||||||||..+|+.||.+|.++..+||+|+|||||||+-+||.|+|++||+|+|.|+|+||+++.+|.|++||+.|+.
T Consensus 699 DEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 699 DEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred cchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999889999999987754
No 18
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.7e-95 Score=853.30 Aligned_cols=569 Identities=29% Similarity=0.409 Sum_probs=514.4
Q ss_pred hhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYF 200 (703)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (703)
..++|++++.+++++.+...++++++..++..+.|+++..++|.+....+ ......+++.++++.++..++.+++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~l~~l~~~~~~~~~~~~~~~~l~~~~ 202 (694)
T TIGR01846 125 FGFSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LSTLSVLALAMLAVAIFEPALGGLRTYL 202 (694)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888877888888777778888899999997753211 1223334445556666778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 201 FAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQ 280 (703)
Q Consensus 201 ~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 280 (703)
...++.++..++|..+|+|++++|+.||++ +++|++++|+ +|++.+++++...+..++..++.+++.++++++++|.
T Consensus 203 ~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 279 (694)
T TIGR01846 203 FAHLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPT 279 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985 7999999999 7999999988877777776666666667888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHH
Q 005314 281 LALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGL 360 (703)
Q Consensus 281 lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 360 (703)
+++++++++|+++++.++..+..++...+..+..++..+.+.|.++|+++||+||.|+.+.++|++..++..+...+..+
T Consensus 280 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 359 (694)
T TIGR01846 280 LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTN 359 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005314 361 IGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKS 440 (703)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~ 440 (703)
..+....+.+++..+..++++++|++++.+|.+|+|.++++.++...+..|+..+...+..+.++..+++|+.++++.++
T Consensus 360 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 439 (694)
T TIGR01846 360 LGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPT 439 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE
Q 005314 441 KIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL 520 (703)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i 520 (703)
+.... .....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 440 e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~i 516 (694)
T TIGR01846 440 EPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV 516 (694)
T ss_pred CccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 53321 111122345789999999999854 457999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 521 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 521 dG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
||+|+++++.+++|++|+||+|||++|++||+|||+++ .++++++++++||+.++++++|++||+||||.+||+|.+||
T Consensus 517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LS 595 (694)
T TIGR01846 517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALC-NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLS 595 (694)
T ss_pred CCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcC-CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999999 56799999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecCh
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth 680 (703)
|||||||+||||++++|+|||||||||+||+++|+.+.+.|.++.+++|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~ 675 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRH 675 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhccCCcHHHHHHHhhh
Q 005314 681 ETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 681 ~eLl~~~~g~Y~~l~~~q~ 699 (703)
+||+++ +|.|++|++.|.
T Consensus 676 ~~l~~~-~~~y~~l~~~~~ 693 (694)
T TIGR01846 676 EELLAL-QGLYARLWQQQS 693 (694)
T ss_pred HHHHHc-CChHHHHHHhhc
Confidence 999996 999999998764
No 19
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-95 Score=776.48 Aligned_cols=559 Identities=30% Similarity=0.428 Sum_probs=489.6
Q ss_pred ChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc--CCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 132 PEIPALLLGSIAAGVL-GVMLPILGILLSGAIKSFF--EPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKL 208 (703)
Q Consensus 132 ~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 208 (703)
|+....++..++.++. ..+....|.++...++..- ++.+.......-.++.|+++.+.+.+++.++...+.++.+++
T Consensus 26 p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~ 105 (591)
T KOG0057|consen 26 PVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRV 105 (591)
T ss_pred ceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333333333 4556667778888888762 221111222233456677788888999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 005314 209 IKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVI-IAFEANWQLALIVLV 287 (703)
Q Consensus 209 ~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i-~~~~~~~~lalv~l~ 287 (703)
....-.++|++.+.++.+||.+ ..+|++.+.+.+....+..++...+..++..++-+..... +..-.+...+++.++
T Consensus 106 iR~~~~~vf~~~~~ld~~~~~~--~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~ 183 (591)
T KOG0057|consen 106 IRDSSSDVFRHLMSLDLSFFLS--RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLG 183 (591)
T ss_pred HHHHHHHHHHHHHhhhHHhhcC--CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 9999999999999999999986 6899999999999999999988888888877766655553 334567777777777
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 005314 288 LVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFG 367 (703)
Q Consensus 288 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (703)
.+..+..+.+....+..++..+..++.++++..+.|.+.|.++||.||.|+++.++|.....++.+...+.....++...
T Consensus 184 ~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnf 263 (591)
T KOG0057|consen 184 TVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNF 263 (591)
T ss_pred HHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHH
Confidence 77777777777777778899999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 005314 368 ISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDE 447 (703)
Q Consensus 368 ~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~ 447 (703)
.-..+.......+.+.|..-+.+|.+|+|+++.++.++.+...|+..++..+.++.++..-+...+...+....+...
T Consensus 264 gQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~-- 341 (591)
T KOG0057|consen 264 GQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA-- 341 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--
Confidence 888888888888888888889999999999999999999999999999999999999999999998876544332211
Q ss_pred CCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC
Q 005314 448 SGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK 527 (703)
Q Consensus 448 ~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~ 527 (703)
..++...++.|+|+||+|.|+ |+++||+++||+|++||+|||||+|||||||++++|+||+| ++|+|+|||+|+++
T Consensus 342 -~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~ 417 (591)
T KOG0057|consen 342 -ALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKE 417 (591)
T ss_pred -cCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhh
Confidence 123344567899999999998 45679999999999999999999999999999999999999 99999999999999
Q ss_pred CCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 528 LQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 528 ~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
++++++|+.|||||||..|||+||.+||.|| ++++++||+.++||.+++||-|++||+||+|.|||+|..|||||||||
T Consensus 418 ~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YG-n~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrv 496 (591)
T KOG0057|consen 418 VSLESLRQSIGVVPQDSVLFNDTILYNIKYG-NPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRV 496 (591)
T ss_pred hChHHhhhheeEeCCcccccchhHHHHhhcC-CCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHH
Confidence 9999999999999999999999999999999 779999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccC
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVK 687 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~ 687 (703)
|||||++|||||++||||||+||.+||+.+.+.+...+.+||+|+|+||++++++||+|++|+||+|.|.|+|+||++ +
T Consensus 497 slaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~ 575 (591)
T KOG0057|consen 497 SLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-P 575 (591)
T ss_pred HHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CcHHHHHHHhhhc
Q 005314 688 DGIYASLVALQTS 700 (703)
Q Consensus 688 ~g~Y~~l~~~q~~ 700 (703)
++.|+.+|..|..
T Consensus 576 s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 576 SELYADLWTTQTS 588 (591)
T ss_pred hhHHHHHhccccc
Confidence 9999999988754
No 20
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.3e-93 Score=826.10 Aligned_cols=567 Identities=36% Similarity=0.525 Sum_probs=519.1
Q ss_pred HHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 124 CRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAV 203 (703)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (703)
++++.+.+++++.++++++++++.+++.+..++++..+++...... .......++++++++.++..++.+++.++..+
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (571)
T TIGR02203 3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR--DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSW 80 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888889999999999999999999999998888665421 11122233445566677778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 204 AGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLAL 283 (703)
Q Consensus 204 ~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lal 283 (703)
.+.++...+|..+|+++++.|.++|++ .++|++.+|+++|++.++.++...+..++.+++.+++.++++++++|.+++
T Consensus 81 ~~~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 81 VSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 005314 284 IVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGG 363 (703)
Q Consensus 284 v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (703)
++++++|++++..++..++.++...+..+..++..+.+.|.++|+++||.++.++.+.++|++..++..+...+..+..+
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 005314 364 VAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKID 443 (703)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~ 443 (703)
+...+..++.++..++++++|++++.+|.+|+|.++++.++...+..|+..+......+.+++.+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCe
Q 005314 444 SSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGV 523 (703)
Q Consensus 444 ~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~ 523 (703)
... .......+.|+++||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 319 ~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 319 TGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 111 1112234679999999999864 467999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 524 EIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 524 di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
|+++++.+++|++|+||||+|+||+|||||||.++++++++++++++|++.+++++++.+||+||||.|||+|.+|||||
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 99999999999999999999999999999999999433799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHH
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eL 683 (703)
|||||||||++++|+|||||||||+||+++|+.+.+.|.+..+++|+|+||||++.++.||+|++|++|+++|.|+|++|
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHhhh
Q 005314 684 VHVKDGIYASLVALQT 699 (703)
Q Consensus 684 l~~~~g~Y~~l~~~q~ 699 (703)
+++ ++.|++++..|.
T Consensus 555 ~~~-~~~~~~~~~~~~ 569 (571)
T TIGR02203 555 LAR-NGLYAQLHNMQF 569 (571)
T ss_pred HHc-CCHHHHHHHHhh
Confidence 986 899999998764
No 21
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.5e-93 Score=883.46 Aligned_cols=572 Identities=28% Similarity=0.477 Sum_probs=516.9
Q ss_pred CchhHHHHhHhhC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005314 119 TEVPLCRLASLNK-PEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLR 197 (703)
Q Consensus 119 ~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (703)
.++++.+++++.. .+++.++++++++++.+++.|+++++++.+++.+... .....+++.+++++++.+++.+++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~ 117 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG-----ENVNDIIFSLVLIGIFQFILSFIS 117 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888754 5778889999999999999999999999999976421 123344556667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 198 SYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEA 277 (703)
Q Consensus 198 ~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 277 (703)
.+++.++++++..++|..+|++++++|++|||+ +++|.+.+++++|++.++..++..+..++..+++++++++++|++
T Consensus 118 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~--~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~ 195 (1466)
T PTZ00265 118 SFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN--NPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFK 195 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHH
Q 005314 278 NWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIK 357 (703)
Q Consensus 278 ~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~ 357 (703)
+|+|++++++++|+++++..+..++++.......+..++..+.+.|.++|+++||+|+.|+++.++|++..+...+...+
T Consensus 196 sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k 275 (1466)
T PTZ00265 196 NARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILK 275 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 358 QGLIGGVAFGISFFLLYAVYACSFYAGARLVEAG--------KTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAI 429 (703)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g--------~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (703)
...+.++..++..++.++.+++++|+|++++.+| .+++|.+++++.........+..+...+..+.++..++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~ 355 (1466)
T PTZ00265 276 ANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEAT 355 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986 58899998887777766666777777889999999999
Q ss_pred HHHHHHhcccccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcC
Q 005314 430 ASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 430 ~~i~~il~~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|++++++.+++++... .+...+.. +.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|
T Consensus 356 ~ri~~ii~~~~~~~~~~-~~~~~~~~-~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g 433 (1466)
T PTZ00265 356 NSLYEIINRKPLVENND-DGKKLKDI-KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER 433 (1466)
T ss_pred HHHHHHHcCCCCCCCCC-CCccCCCC-CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 99999999877654311 11112222 47999999999997656689999999999999999999999999999999999
Q ss_pred CCCCCCCeEEE-CCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCC----------------------------
Q 005314 510 FYDPDTGHITL-DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKE---------------------------- 560 (703)
Q Consensus 510 ~y~p~~G~I~i-dG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~---------------------------- 560 (703)
+|+|++|+|++ ||+|+++++.+++|++||||+|+|.||++||+|||.||..
T Consensus 434 l~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (1466)
T PTZ00265 434 LYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNS 513 (1466)
T ss_pred hccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccc
Confidence 99999999999 5799999999999999999999999999999999999731
Q ss_pred ----------------------------CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 561 ----------------------------GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 561 ----------------------------~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
.+++++++++||+.+++|+||.+||+||||.||++|.+||||||||||||||
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARA 593 (1466)
T PTZ00265 514 CRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARA 593 (1466)
T ss_pred ccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHH
Confidence 1367899999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCC------------------
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKNG------------------ 672 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~G------------------ 672 (703)
|+++|+|||||||||+||+++|+.|+++|+++. +++|+|+||||+++++.||+|+||++|
T Consensus 594 ll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~ 673 (1466)
T PTZ00265 594 IIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKD 673 (1466)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccc
Confidence 999999999999999999999999999999986 489999999999999999999999986
Q ss_pred -----------------------------EEEEecChhHHhccCCcHHHHHHHhhh
Q 005314 673 -----------------------------VIAEKGKHETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 673 -----------------------------~Ive~Gth~eLl~~~~g~Y~~l~~~q~ 699 (703)
+|+|+|||+||+++++|.|+.|++.|.
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 674 NKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 599999999999845999999998874
No 22
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.2e-92 Score=817.38 Aligned_cols=566 Identities=30% Similarity=0.401 Sum_probs=501.4
Q ss_pred hHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 122 PLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFF 201 (703)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (703)
.+++++.+.+++++.+++.++++++..++....|+++..++|.+.... ....+++++++++++..+..++..+..
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-----DIFPLLAAWAGFGLFNIIAGVLVARHA 80 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888888888888999999998765321 111222333333344444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 202 AVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQL 281 (703)
Q Consensus 202 ~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l 281 (703)
.+...++..+++..+|+|++++|+.+|++ .++|++++|+++|++.+...+...+..++..++.+++.++++++++|.+
T Consensus 81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (588)
T PRK13657 81 DRLAHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRL 158 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777778889999999999999985 7999999999999999998888888787878878888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHH
Q 005314 282 ALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLI 361 (703)
Q Consensus 282 alv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 361 (703)
++++++++|+++++..+..++.++...+..+..++..+.+.|.++|+++||.|+.++.+.++|.+..++..+...+....
T Consensus 159 ~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (588)
T PRK13657 159 SLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSW 238 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888899999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005314 362 GGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSK 441 (703)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~ 441 (703)
.+....+.+++..+..++++++|++++.+|.+|+|++++++.++..+..|+..+...+..+..+..+++|+.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~ 318 (588)
T PRK13657 239 WALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPD 318 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 88888888899989999999999999999999999999999999999999999999999999999999999999987544
Q ss_pred CCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC
Q 005314 442 IDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD 521 (703)
Q Consensus 442 ~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id 521 (703)
.+.... ....+...+.|+|+||+|+||++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 319 ~~~~~~-~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~ 395 (588)
T PRK13657 319 VRDPPG-AIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395 (588)
T ss_pred cCCCCC-CCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 221111 11112234579999999999843 469999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 522 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 522 G~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
|+|+++++.+++|++|+||||||+||+|||||||+++ .++++++++++|++.+++++||.+||+|+||.+|++|.+|||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~-~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG-RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcC-CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 9999999999999999999999999999999999999 567899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChh
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~ 681 (703)
||||||||||||+++|+|||||||||+||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhccCCcHHHHHHHhhh
Q 005314 682 TLVHVKDGIYASLVALQT 699 (703)
Q Consensus 682 eLl~~~~g~Y~~l~~~q~ 699 (703)
+|+++ +|.|++|+..|.
T Consensus 555 ~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 555 ELVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHHC-CChHHHHHHHhh
Confidence 99986 899999998663
No 23
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.9e-93 Score=812.25 Aligned_cols=526 Identities=23% Similarity=0.292 Sum_probs=463.8
Q ss_pred HHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 124 CRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAV 203 (703)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (703)
++++++.+++++.++++++++++..++..+.|++++.++|....... . .....+.++++++.++..++.+++.++..+
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 2 LRILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-V-LYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888888888999999987653211 0 001111112223455667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 204 AGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLAL 283 (703)
Q Consensus 204 ~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lal 283 (703)
++.++..++|.++|+|++++|..||++ +++|++++|+++|++.++.++...+..++..++.++++++++++++|.+++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999985 799999999999999999999998888888998888888999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHH
Q 005314 284 IVLVLVPLLVLNG-YAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIG 362 (703)
Q Consensus 284 v~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (703)
++++++|+++++. ++..+..+...++..+..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888776654 444555566667777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 005314 363 GVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKI 442 (703)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~ 442 (703)
+....+..++..+..++++++|++++.+|.+|+|.++++.++...+..++..+...+..+.++..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCC-CccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC
Q 005314 443 DSSDES-GTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD 521 (703)
Q Consensus 443 ~~~~~~-~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id 521 (703)
...... ........++|+|+||+|+||++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 221111 11111234679999999999853 469999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 522 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 522 G~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
|+|++++ .+++|++|+||||||+||+|||||||+|| .++++++++++|++.|+++|||.+||+||||.|||+|.+|||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g-~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 473 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLG-RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG 473 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhcc-CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence 9999999 99999999999999999999999999999 568999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCc
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRL 657 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrl 657 (703)
|||||||||||+++||+||||||||||||+++|+.|+++|.+..+++|+|+||||+
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999988999999999996
No 24
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7.6e-92 Score=810.19 Aligned_cols=565 Identities=29% Similarity=0.406 Sum_probs=503.4
Q ss_pred HHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 123 LCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFA 202 (703)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (703)
+++++++.+++++.++++++++++..++.++.|++++.++|.+..... ...+.+++++++++..+..++..++..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPTLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999999999999999998754211 111122222233444455556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 203 VAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLA 282 (703)
Q Consensus 203 ~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~la 282 (703)
+++.++..++|..+|+|++++|++||++ +++|++++|+++|++.++.++...+..++..++.+++.++++++++|.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777788889999999999999985 78999999999999999999988888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHH
Q 005314 283 LIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIG 362 (703)
Q Consensus 283 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (703)
+++++++|+++++.....++.++...+..+..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888899999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 005314 363 GVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKI 442 (703)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~ 442 (703)
++...+..++..+..++++++|++++.+|.+|+|++++++.+...+..|+..+...+..+..+..+++|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999999875442
Q ss_pred CCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC
Q 005314 443 DSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG 522 (703)
Q Consensus 443 ~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG 522 (703)
..... ....+...+.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 320 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 396 (585)
T TIGR01192 320 EEPAD-APELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396 (585)
T ss_pred cCCcc-CCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC
Confidence 21111 11112234679999999999843 4689999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 523 VEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 523 ~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
+|+++++.+++|++++||+|||++|++||+|||.++ .++++++++++|++.+++++++.++|+||||.+|++|.+||||
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLG-REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcC-CCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 999999999999999999999999999999999999 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhH
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~e 682 (703)
|||||+|||||+++|+|||||||||+||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|++
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhccCCcHHHHHHHhhh
Q 005314 683 LVHVKDGIYASLVALQT 699 (703)
Q Consensus 683 Ll~~~~g~Y~~l~~~q~ 699 (703)
|+++ +|.|+++|+.|.
T Consensus 556 l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 556 LIQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHHC-CChHHHHHHhCc
Confidence 9986 999999998874
No 25
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.5e-91 Score=809.55 Aligned_cols=571 Identities=36% Similarity=0.542 Sum_probs=509.9
Q ss_pred hHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 122 PLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFF 201 (703)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (703)
.+++++++.+++++.+++.+++.++.+++....|+++..+++......+ ......++.+++++.++..++.+++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (576)
T TIGR02204 5 PLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--SGLLNRYFAFLLVVALVLALGTAARFYLV 82 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888888888888888888888899999999987543221 11222333444445555667788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 202 AVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQL 281 (703)
Q Consensus 202 ~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l 281 (703)
.+++.++...+|..+|++++++|..+|++ .++|++.+|+++|++.++.++...+..++..++.+++.++++++++|.+
T Consensus 83 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (576)
T TIGR02204 83 TWLGERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKL 160 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999985 6899999999999999999998888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHH
Q 005314 282 ALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLI 361 (703)
Q Consensus 282 alv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 361 (703)
++++++++|++++..++..+..++..++..+..++..+.+.|.++|+++||.|+.|+.+.++|++..++..+...+....
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (576)
T TIGR02204 161 TSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRT 240 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888889999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005314 362 GGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSK 441 (703)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~ 441 (703)
..+...+..++.++..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..+.++..+++|+.++++.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~ 320 (576)
T TIGR02204 241 RALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPD 320 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 88777777777778888888999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC
Q 005314 442 IDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD 521 (703)
Q Consensus 442 ~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id 521 (703)
.+.............+.|+|+||+|+||.++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 321 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~ 400 (576)
T TIGR02204 321 IKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLD 400 (576)
T ss_pred CCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 22111111111122357999999999986434679999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 522 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 522 G~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
|+|+++++.+++|++|+||||+|++|+|||||||.+| .+++++++++++++.++++++++++|+|+||.+||+|.+|||
T Consensus 401 g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~-~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSg 479 (576)
T TIGR02204 401 GVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYG-RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSG 479 (576)
T ss_pred CEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcC-CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCH
Confidence 9999999999999999999999999999999999999 567889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChh
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~ 681 (703)
||||||+||||++++|+|||||||||+||+++|+.+.+.|.++.+++|+|+||||++.++.||+|++|++|+++|.|+|+
T Consensus 480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhccCCcHHHHHHHhh
Q 005314 682 TLVHVKDGIYASLVALQ 698 (703)
Q Consensus 682 eLl~~~~g~Y~~l~~~q 698 (703)
+|+++ ++.|++|++.|
T Consensus 560 ~l~~~-~~~~~~l~~~~ 575 (576)
T TIGR02204 560 ELIAK-GGLYARLARLQ 575 (576)
T ss_pred HHHHc-CChHHHHHhhc
Confidence 99986 99999999876
No 26
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.5e-91 Score=806.15 Aligned_cols=544 Identities=26% Similarity=0.408 Sum_probs=484.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 005314 148 GVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSW 227 (703)
Q Consensus 148 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~ 227 (703)
.++..+.|++++.++|.+...... ......|+++++++.++..++.+++.++....+.++..++|..+|+|++++|++|
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~ 86 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEF 86 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 334445667788888876432111 1123344555555666677888888899889999999999999999999999999
Q ss_pred cccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005314 228 FDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIA-FEANWQLALIVLVLVPLLVLNGYAHMKFLKGF 306 (703)
Q Consensus 228 f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~-~~~~~~lalv~l~~~~l~~~~~~~~~~~~~~~ 306 (703)
|++ +++|++++|+++|++.++..+...+..++..++.++++++++ ++++|++++++++++|+++++.....++.++.
T Consensus 87 ~~~--~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 87 YLR--HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HcC--CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 984 789999999999999999888888888787766665555555 58999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 307 SADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGAR 386 (703)
Q Consensus 307 ~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 386 (703)
..+.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..+....+.+.+..+..++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999988888888888888888889999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccccCCCCcEEEEEEEE
Q 005314 387 LVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITF 466 (703)
Q Consensus 387 lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~~I~~~~vsF 466 (703)
++.+|.+|+|.++++..+...+..|+..+...+..+.+++.+.+|+.++++.+++..... ...+...+.|+|+||+|
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999998764422111 11122346799999999
Q ss_pred EcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCC
Q 005314 467 KYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 546 (703)
Q Consensus 467 ~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~L 546 (703)
+|+.. ++++|+|+||+|+||+++|||||||||||||+++|+|+|+|++|+|++||+|+++++..++|++|+||+|+|+|
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99854 45799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccC
Q 005314 547 FNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEAT 626 (703)
Q Consensus 547 F~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaT 626 (703)
|++||+|||++| .++++++++++|++.+++++++.+||+||||.+|++|.+|||||||||+||||++++|+||||||||
T Consensus 401 f~~ti~~Ni~~~-~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 401 FSDTVANNIALG-RPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred ccccHHHHHhcC-CCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 999999999999 5678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhhhc
Q 005314 627 SALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 627 SaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q~~ 700 (703)
|+||+++|+.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|.|+|++|+++ +|.|++++..|..
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999999998889999999999999999999999999999999999999986 9999999987753
No 27
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3e-91 Score=873.50 Aligned_cols=511 Identities=23% Similarity=0.263 Sum_probs=445.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHH
Q 005314 178 FWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDAL 257 (703)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~ 257 (703)
+|..++++++++..++.++..+++...+.+...++|..+|++++++|++||++ +++|++++|+++|++.++..+...+
T Consensus 1006 ~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnR~s~Di~~id~~l~~~~ 1083 (1522)
T TIGR00957 1006 LRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELDTVDSMIPPVI 1083 (1522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777888888888888999999999999999999999999999985 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCch
Q 005314 258 GLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAE 337 (703)
Q Consensus 258 ~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e 337 (703)
..++..++.+++.++++++.+|.++++++.+++++++...++.+..+..........+...+.+.|+++|++|||+|++|
T Consensus 1084 ~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~ 1163 (1522)
T TIGR00957 1084 KMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQ 1163 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhH
Confidence 99999999998888888888887766666555555555555555555555556667778889999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005314 338 EKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVE-AGKTTFQEVFRVFFALSMAATGLSQSG 416 (703)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~~s~g~~~~~~~~~~~~~~~~~~~~ 416 (703)
+++.+++.+..+...+..........+.....+++..+ +++++++..+. .|.++.|.+.+++.+...+..++..+.
T Consensus 1164 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~ 1240 (1522)
T TIGR00957 1164 ERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLV 1240 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777766665555555544444332 33444444443 688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccc--CCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEc
Q 005314 417 ILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIE--NVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVG 494 (703)
Q Consensus 417 ~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~--~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG 494 (703)
..+.++..+..+.+|+.++++.+++.....+...+++ +..|.|+|+||+|+|+.+ .++||+|+||+|+|||+|||||
T Consensus 1241 ~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVG 1319 (1522)
T TIGR00957 1241 RMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVG 1319 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEEC
Confidence 9999999999999999999987665321111111111 245899999999999854 3479999999999999999999
Q ss_pred CCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHH
Q 005314 495 ESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAEL 574 (703)
Q Consensus 495 ~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~ 574 (703)
+||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||... . +++|+|+++|++.
T Consensus 1320 rTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~-~~sdeei~~al~~ 1397 (1522)
T TIGR00957 1320 RTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-S-QYSDEEVWWALEL 1397 (1522)
T ss_pred CCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-c-CCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999854 2 5899999999999
Q ss_pred hcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEc
Q 005314 575 ANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIA 654 (703)
Q Consensus 575 a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIa 654 (703)
|++++||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++..++||+|+||
T Consensus 1398 a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IA 1477 (1522)
T TIGR00957 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIA 1477 (1522)
T ss_pred cCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHh
Q 005314 655 HRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVAL 697 (703)
Q Consensus 655 Hrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~ 697 (703)
||++|+.+||+|+||++|+|+|.|+|+||+++ +|.|++|++.
T Consensus 1478 HRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1478 HRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred cCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 99999999999999999999999999999997 8999999976
No 28
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.6e-91 Score=868.75 Aligned_cols=514 Identities=22% Similarity=0.300 Sum_probs=412.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHH
Q 005314 177 DFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDA 256 (703)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~ 256 (703)
.+|.+++++++++..++.+++.+++.+.+.+...++|.++|++++++|++||++ +++|++++|+++|++.++..+...
T Consensus 953 ~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~ 1030 (1622)
T PLN03130 953 LFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVF 1030 (1622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHH
Confidence 456666777888888889999999999999999999999999999999999985 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC
Q 005314 257 LGLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLN-GYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFC 335 (703)
Q Consensus 257 ~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~ 335 (703)
+..++..++.+++.++++++++| +.+++++.+++++.. ..++.+..++..+......+...+.+.|+++|++|||+|+
T Consensus 1031 ~~~~~~~~~~~i~~~i~i~~~~~-~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~ 1109 (1622)
T PLN03130 1031 VNMFLGQIFQLLSTFVLIGIVST-ISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 1109 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCc
Confidence 99999898888888888877777 333322222222221 2223333333344444556678889999999999999999
Q ss_pred chHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC-----HHHHHHHHHHHHHHH
Q 005314 336 AEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGK-TT-----FQEVFRVFFALSMAA 409 (703)
Q Consensus 336 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~-~s-----~g~~~~~~~~~~~~~ 409 (703)
.++++.+.+.+..+...+..........+......++ ..+++++.+...+..+. .+ .+.+-.++.+...+.
T Consensus 1110 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~ 1186 (1622)
T PLN03130 1110 AYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNIT 1186 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHH
Confidence 9988777776666554443333222222222222222 22222333334344332 11 122222233444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccc--cCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCC
Q 005314 410 TGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTI--ENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSG 487 (703)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~--~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G 487 (703)
..+..+......+..+..+.+|+.++++.+++.....+...+. .+..|.|+|+||+|+|+++ .++||+|+||+|+||
T Consensus 1187 ~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~G 1265 (1622)
T PLN03130 1187 SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPS 1265 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCC
Confidence 5666677777888999999999999998776532211111111 1245789999999999643 347999999999999
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHH
Q 005314 488 KMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAE 567 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~e 567 (703)
|+|||||+||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||+|||||||.++ . +++|+|
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~-~-~~tdee 1343 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPF-N-EHNDAD 1343 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcC-C-CCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 4 589999
Q ss_pred HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCC
Q 005314 568 VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVG 647 (703)
Q Consensus 568 i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~ 647 (703)
+++||+.|++++||.+||+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++..++
T Consensus 1344 i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~ 1423 (1622)
T PLN03130 1344 LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1423 (1622)
T ss_pred HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhhh
Q 005314 648 RTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 648 rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q~ 699 (703)
||+|+||||++|+++||+|+||++|+|+|.|+|+||+++++|.|++|++.+.
T Consensus 1424 ~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1424 CTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999865799999997654
No 29
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-93 Score=738.92 Aligned_cols=492 Identities=35% Similarity=0.485 Sum_probs=451.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 005314 198 SYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAF-E 276 (703)
Q Consensus 198 ~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~-~ 276 (703)
..++...++.....+--..|.|+.++++.|+-+ +.+|.+..-+......+..+....+..++..++-+...+++++ .
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 456777888999999999999999999999874 7899999999999989998888888888877776666665554 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHH
Q 005314 277 ANWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGI 356 (703)
Q Consensus 277 ~~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~ 356 (703)
++|+.+++.++++.++.++.....-+...+.++..++..++.....|.+-|.+|||.|+.|+.+..+|.+.++.+.+...
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 79999999999999888887666666667778888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005314 357 KQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAIL 436 (703)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il 436 (703)
|...-.++...+-..+.........+.++..+..|.+|+|+++....++.....|+.-++..+.++.+++..+++.++++
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 98888888888888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCcccc-CCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCC
Q 005314 437 DRKSKIDSSDESGTTIE-NVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT 515 (703)
Q Consensus 437 ~~~~~~~~~~~~~~~~~-~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~ 515 (703)
+.+.+....... .++. ...|.|.|+||+|.|.. ..++|+++||++++|+++|+||+||+||||++++|.||||+++
T Consensus 241 ~~~~~v~d~pda-~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 241 DVEAEVSDAPDA-PPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred ccchhhccCCCC-ccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 987665432221 2222 34578999999999974 5789999999999999999999999999999999999999999
Q ss_pred CeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCC
Q 005314 516 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGER 595 (703)
Q Consensus 516 G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~ 595 (703)
|.|.+||+|++++..+++|+-||.||||..|||+||..||.|| .+++|++|+++|++.|.+|+||.+||+||||.|||+
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~yg-r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vger 396 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG-RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGER 396 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhcc-CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchh
Confidence 9999999999999999999999999999999999999999999 679999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEE
Q 005314 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIA 675 (703)
Q Consensus 596 G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Iv 675 (703)
|-.||||||||+||||+++|+|+||+|||||||||.+||+.||.+|++..+|||+++|||||||+-+||.|+||+||+|+
T Consensus 397 glklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~ 476 (497)
T COG5265 397 GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIV 476 (497)
T ss_pred eeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHhccCCcHHHHHHH
Q 005314 676 EKGKHETLVHVKDGIYASLVA 696 (703)
Q Consensus 676 e~Gth~eLl~~~~g~Y~~l~~ 696 (703)
|.|+|+||++. +|.|++||.
T Consensus 477 erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 477 ERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred ecCcHHHHHHc-CChHHHHhc
Confidence 99999999997 999999995
No 30
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-90 Score=735.98 Aligned_cols=554 Identities=25% Similarity=0.297 Sum_probs=465.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 133 EIPALLLGSIAAGVLGVMLPILGILLSGAIKSF-FEPADELRKDTDFW--ALMYLFLAIACLLAHPLRSYFFAVAGCKLI 209 (703)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (703)
+|..++++++++++..+.....-.+-+++|..- ..+.. ....++ +..+=++++...+.+|+..++.+....++.
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~---~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL 90 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLA---YIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVL 90 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 667777888777765544332222233333321 11111 111222 222224778888999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 005314 210 KRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIVLV-L 288 (703)
Q Consensus 210 ~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~-~ 288 (703)
.++|.++|+|+...++.-... .++|++++|+..|++.+++++-..+..++..++..++..+.+-+++|.+++.+.+ +
T Consensus 91 ~~lRv~~f~kl~p~sp~~~~r--~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~l 168 (573)
T COG4987 91 SALRVRLFEKLEPLSPALLLR--YRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLIL 168 (573)
T ss_pred HHHHHHHHHhhccCChHHHHh--cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999988887653 7899999999999999999999988888877777666666666789988876544 4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 005314 289 VPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGI 368 (703)
Q Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (703)
+.++++++.++.+..+++.+......+...+.+.|.+.|..+++.||.++.+.+.+.+....+.+.+.+..++.++...+
T Consensus 169 l~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~ 248 (573)
T COG4987 169 LLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAI 248 (573)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 005314 369 SFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSG-ILAPEASRAKSAIASVYAILDRKSKIDSSDE 447 (703)
Q Consensus 369 ~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~ 447 (703)
.+++..+..+..+.+.+..+..|..+......+.+.......++..+. ..+.+..+...++.|+.++++.+++...+.+
T Consensus 249 ~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~ 328 (573)
T COG4987 249 LLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE 328 (573)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcc
Confidence 999988887744444445566777764333333333223333344444 5667889999999999999998877554411
Q ss_pred CCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC
Q 005314 448 SGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK 527 (703)
Q Consensus 448 ~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~ 527 (703)
.. +.....++++||+|+||+. +.++|+|+||++++||+|||+|+|||||||++++|.|-|||++|+|+++|.++..
T Consensus 329 ~~---~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 329 QT---ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred cc---CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 11 1112279999999999975 5689999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 528 LQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 528 ~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
++.+.+|+.|++++|.++||++|+|+|+.++ ++++||||+++|++++|+++++++.|+||+|++||+|.+||||||||+
T Consensus 405 l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA-~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLA-NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred CChhhHHHHHhhhccchHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH
Confidence 9999999999999999999999999999999 778999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccC
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVK 687 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~ 687 (703)
||||+|++|+|++||||||.+||++||++|++.|.+.++|||+|+||||+..++.||||+||+||+|+|+|+|.+|+++
T Consensus 484 AlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~- 562 (573)
T COG4987 484 ALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN- 562 (573)
T ss_pred HHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CcHHHHHHHh
Q 005314 688 DGIYASLVAL 697 (703)
Q Consensus 688 ~g~Y~~l~~~ 697 (703)
+|.|+++++.
T Consensus 563 ~g~~~~l~q~ 572 (573)
T COG4987 563 NGRYKRLYQL 572 (573)
T ss_pred ccHHHHHhcc
Confidence 9999999864
No 31
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.8e-89 Score=784.11 Aligned_cols=528 Identities=25% Similarity=0.317 Sum_probs=472.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 134 IPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIR 213 (703)
Q Consensus 134 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr 213 (703)
|+.++++++++++.+++.++.|++++.++|.+..+... ......+++++++++++..++.+++.++..+.+.++..++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888899999999999987422111 12234455556667777888999999999999999999999
Q ss_pred HHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 214 SMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLV 293 (703)
Q Consensus 214 ~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~ 293 (703)
..+|++++++|+.||++ +++|++++|+++|++.++.++...+..++..++.++++++++++++|.+++++++++|+++
T Consensus 81 ~~l~~~l~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQG--RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhcc--CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999984 7999999999999999999999888888888888888888899999999999999999888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 294 LNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLL 373 (703)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (703)
++.....++.++...+.++..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+..+.......+.+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777888888888888899999999999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccc
Q 005314 374 YAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIE 453 (703)
Q Consensus 374 ~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~ 453 (703)
.+..+++++++++.+.+|.+|+|.+++++.+......|+..+......+.++..+++|++++++.+++..... ... .
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~--~~~-~ 315 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA--PVT-A 315 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc--CCC-C
Confidence 7777776667777777999999999999999999999999999999999999999999999998543211111 111 1
Q ss_pred CCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH
Q 005314 454 NVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 454 ~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l 533 (703)
...+.|+|+||+|+||++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 113579999999999864 3579999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 534 RQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
|++|+||+|||++|++||||||++| .++++++++++|++.+++++||++||+||||.+||+|.+|||||||||+||||+
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal 473 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLA-RPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF 473 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhcc-CCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 567899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEE
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVV 669 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl 669 (703)
+++|+|||||||||+||+++|+.+++.|.+..+++|+|+||||+++++.||+|++|
T Consensus 474 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 474 LRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999999988899999999999999999999986
No 32
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.5e-90 Score=859.28 Aligned_cols=515 Identities=21% Similarity=0.297 Sum_probs=416.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHH
Q 005314 177 DFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDA 256 (703)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~ 256 (703)
.+|..++++++++..++.+++.+++...+.+...++|.++|++++++|++||++ +++|++++|+++|++.++..+...
T Consensus 950 ~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~Di~~id~~l~~~ 1027 (1495)
T PLN03232 950 GFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT--NPTGRVINRFSKDIGDIDRNVANL 1027 (1495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc--CCchHHHHHhHhhHHHHHHHHHHH
Confidence 456677778888888899999999999999999999999999999999999985 799999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC
Q 005314 257 LGLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLNG-YAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFC 335 (703)
Q Consensus 257 ~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~ 335 (703)
+..++..++.++++++++++++|.. +++++.+++++... .+..+..+...+......+...+.+.|+++|++|||+|+
T Consensus 1028 ~~~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~ 1106 (1495)
T PLN03232 1028 MNMFMNQLWQLLSTFALIGTVSTIS-LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYK 1106 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCC
Confidence 8888888888888777777766533 33222222222221 222333344445556666778889999999999999999
Q ss_pred chHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC----CHHHHH-HHHHHHHHHH
Q 005314 336 AEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVE-AGKT----TFQEVF-RVFFALSMAA 409 (703)
Q Consensus 336 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~~----s~g~~~-~~~~~~~~~~ 409 (703)
.++++.+++.+..+...+..........+.... +..+..+++++.+...+. .|.+ .+...+ .++.+...+.
T Consensus 1107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~ 1183 (1495)
T PLN03232 1107 AYDRMAKINGKSMDNNIRFTLANTSSNRWLTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNIT 1183 (1495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence 999887777776655554443322222222111 112222233333444443 2432 112222 2344555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccc--cCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCC
Q 005314 410 TGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTI--ENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSG 487 (703)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~--~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G 487 (703)
.++..+...+.++..+..+.+|++++++.+++.....+...+. .+..|.|+|+||+|+|+.+ .++||+|+||+|+||
T Consensus 1184 ~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~G 1262 (1495)
T PLN03232 1184 TLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPS 1262 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCC
Confidence 6778888888999999999999999998776533211111111 1345789999999999643 357999999999999
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHH
Q 005314 488 KMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAE 567 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~e 567 (703)
|+|||||+||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||+|||||||.++ + +++|+|
T Consensus 1263 ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~-~-~~sdee 1340 (1495)
T PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPF-S-EHNDAD 1340 (1495)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCC-C-CCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 4 689999
Q ss_pred HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCC
Q 005314 568 VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVG 647 (703)
Q Consensus 568 i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~ 647 (703)
+++|++.|++++||++||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++..++
T Consensus 1341 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~ 1420 (1495)
T PLN03232 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420 (1495)
T ss_pred HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhhhc
Q 005314 648 RTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 648 rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q~~ 700 (703)
||+|+||||++|+++||+|+||++|+|+|.|+|+||+++++|.|++|++.+..
T Consensus 1421 ~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1421 CTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred CEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999999999999999999999999999999999998745699999987653
No 33
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.3e-88 Score=847.52 Aligned_cols=517 Identities=22% Similarity=0.245 Sum_probs=435.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHH
Q 005314 179 WALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALG 258 (703)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~ 258 (703)
|..+|+++.++..++..++.+.....+.+....+|..+|++++++|+.||++ +++|++++|+++|++.++..+...+.
T Consensus 1000 ~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~Di~~id~~l~~~l~ 1077 (1560)
T PTZ00243 1000 YLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSRDIDILDNTLPMSYL 1077 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444555555555555666666666777888899999999999999999985 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchH
Q 005314 259 LHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEE 338 (703)
Q Consensus 259 ~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~ 338 (703)
.++..++.+++.++++++.+|.+.++++.++.+++.+...+.+..+...+......+.....+.|+++|++|||+|+.++
T Consensus 1078 ~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~ 1157 (1560)
T PTZ00243 1078 YLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAH 1157 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHH
Confidence 99999999999888888888844433332222223333344445555555556677788999999999999999999999
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005314 339 KVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARL--VEAGKTTFQEVFRVFFALSMAATGLSQSG 416 (703)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l--v~~g~~s~g~~~~~~~~~~~~~~~~~~~~ 416 (703)
.+.++|.+..+...+...+......+......++..+..+++.+++... ...+.+++|.+..++++...+..++..+.
T Consensus 1158 ~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~ 1237 (1560)
T PTZ00243 1158 LVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLV 1237 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888887777777776666766666555544444433 33456789988888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCC--------------------------CCCCc---cccCCCCcEEEEEEEEE
Q 005314 417 ILAPEASRAKSAIASVYAILDRKSKIDSS--------------------------DESGT---TIENVKGDIEFQHITFK 467 (703)
Q Consensus 417 ~~~~~~~~~~~~~~~i~~il~~~~~~~~~--------------------------~~~~~---~~~~~~~~I~~~~vsF~ 467 (703)
..+.++.++..+++|++++++..++.+.. ..... +.....|.|+|+||+|+
T Consensus 1238 ~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~ 1317 (1560)
T PTZ00243 1238 RQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMR 1317 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEE
Confidence 99999999999999999999743321100 00000 01113478999999999
Q ss_pred cCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCC
Q 005314 468 YPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 547 (703)
Q Consensus 468 Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF 547 (703)
|+++ .++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||
T Consensus 1318 Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF 1396 (1560)
T PTZ00243 1318 YREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLF 1396 (1560)
T ss_pred eCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccc
Confidence 9754 356999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC-CCEEEeeccC
Q 005314 548 NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA-PKILLLDEAT 626 (703)
Q Consensus 548 ~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~-p~ILlLDEaT 626 (703)
+|||||||..+ . +++++||++|++.|++++||.+||+||||.|||+|.+|||||||||||||||+++ |+||||||||
T Consensus 1397 ~gTIreNIdp~-~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEAT 1474 (1560)
T PTZ00243 1397 DGTVRQNVDPF-L-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEAT 1474 (1560)
T ss_pred cccHHHHhCcc-c-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 99999999876 3 6899999999999999999999999999999999999999999999999999996 8999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhhhc
Q 005314 627 SALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 627 SaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q~~ 700 (703)
|+||++||+.|+++|++..+++|+|+||||++|+++||+|+||++|+|+|.|+|+||+++++|.|++|++.+..
T Consensus 1475 SaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1475 ANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999999999999999989999999999999999999999999999999999999998558999999987643
No 34
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.3e-87 Score=770.33 Aligned_cols=539 Identities=22% Similarity=0.291 Sum_probs=475.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 131 KPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIK 210 (703)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 210 (703)
+++++.+++.++++++..++..+.|+++..++|.+....+ ......++++++++.++..++.+++.++..+.+.++..
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDG 79 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777778888899999987653211 12233345555556667778899999999999999999
Q ss_pred HHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 211 RIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGD-ALGLHVQNIATLFAGVIIAFEANWQLALIVLVLV 289 (703)
Q Consensus 211 ~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~-~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~ 289 (703)
++|.++|+|++++|+.. .+...+++.+|++.++.++.. .+..++..++.+++ ++++++++|.+++++++++
T Consensus 80 ~lr~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~ 151 (544)
T TIGR01842 80 ALNQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGA 151 (544)
T ss_pred HHHHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHH
Confidence 99999999999999842 245678899999999998877 45555555555544 4678899999999999888
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 005314 290 PLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGIS 369 (703)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (703)
|+++++.++..++.++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+.....+....+.
T Consensus 152 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (544)
T TIGR01842 152 VVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLS 231 (544)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777778888888888899999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 005314 370 FFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESG 449 (703)
Q Consensus 370 ~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~ 449 (703)
.++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+.++.++..+.+|+.++++.+++....
T Consensus 232 ~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---- 307 (544)
T TIGR01842 232 KYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---- 307 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----
Confidence 8888888889999999999999999999999999999999999999999999999999999999999875542211
Q ss_pred ccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC
Q 005314 450 TTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ 529 (703)
Q Consensus 450 ~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~ 529 (703)
...+...+.|+++||+|+||+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++
T Consensus 308 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~ 386 (544)
T TIGR01842 308 MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWD 386 (544)
T ss_pred CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCC
Confidence 1112234679999999999854 357999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
.+++|++++||||||++|++|++|||+++ .++++++++++|++.+++++++++||+||||.+||+|.+|||||||||+|
T Consensus 387 ~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 387 RETFGKHIGYLPQDVELFPGTVAENIARF-GENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred HHHHhhheEEecCCcccccccHHHHHhcc-CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999988 45689999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||++++|+|||||||||+||+++|+.+.+.|.+.. +++|+|+||||+++++.||+|++|++|+++|.|+|+||++
T Consensus 466 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999999999875 6899999999999999999999999999999999999986
No 35
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=5.6e-83 Score=732.60 Aligned_cols=535 Identities=18% Similarity=0.176 Sum_probs=453.4
Q ss_pred hhHHHHhHhhC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASLNK-PEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSY 199 (703)
Q Consensus 121 ~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (703)
..+++++++.+ ++++.++++++++++.++.....+++++.+++.... .. .....| ++++.++.+++.+++.+
T Consensus 3 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~---~~~~~~---~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 3 AAIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENF-LG---QGSLFS---FGGLCLLALLFRIGADI 75 (555)
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cc---chHHHH---HHHHHHHHHHHHHHHHH
Confidence 45788889999 999999999999998888888888877777653211 00 011111 33345556678888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 200 FFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANW 279 (703)
Q Consensus 200 ~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 279 (703)
+....+.++..++|..+|+|++++|+.||++ +++|++++|+++|++.++.++.. +..++..+++++++++++++++|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999985 79999999999999999998865 66777788888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchH--HHHHHHHHHHhcHHHHHHH
Q 005314 280 QLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEE--KVMELYQKKCGGPSKKGIK 357 (703)
Q Consensus 280 ~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~--~~~~~~~~~~~~~~~~~~~ 357 (703)
.+++++++++|+.++...+..++.++...+.++..++..+.+.|.++|+++||+|+.++ ...+++++..++..+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999888877777777777788888889999999999999999999999954 6678899888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005314 358 QGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILD 437 (703)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~ 437 (703)
..........+..++..+..++.+++|++. |.+|+|+++++.++...+..|+..+...+..+.++..+++|++++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766666555655666555555556666543 78999999999999999999999999999999999999999999986
Q ss_pred ccccCCC----CCCCCc---cccCCCCcEEEEEEEEEcCCCC--CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHc
Q 005314 438 RKSKIDS----SDESGT---TIENVKGDIEFQHITFKYPARP--DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 438 ~~~~~~~----~~~~~~---~~~~~~~~I~~~~vsF~Y~~~~--~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~ 508 (703)
.+.+.+. ++.... ......+.|+|+||+|+|++.+ ++++|+|+||+|++||++|||||||||||||+++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4221111 000000 1112246799999999998532 236999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccc
Q 005314 509 RFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGY 588 (703)
Q Consensus 509 g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~ 588 (703)
|+|+|++|+|++||+|+++++.+++|+++++|+||++||++|+++|+ .+++++++++++++.++++++++.+|+||
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~----~~~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE----GEHASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc----ccchhHHHHHHHHHHcCCchhhccccccc
Confidence 99999999999999999999999999999999999999999999995 34688999999999999999999999999
Q ss_pred cchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHH-HH-cCCceEEEEccCchHHhhcCEE
Q 005314 589 DTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALE-RV-MVGRTTVVIAHRLSTIRDADLI 666 (703)
Q Consensus 589 dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~-~~-~~~rT~IvIaHrlsti~~aD~I 666 (703)
||. .+||||||||||||||++++|+|||||||||+||+++|+.+++.+. .. .+++|+|+||||+++++.||+|
T Consensus 466 ~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i 540 (555)
T TIGR01194 466 STT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540 (555)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEE
Confidence 994 8899999999999999999999999999999999999999998874 33 4689999999999999999999
Q ss_pred EEEeCCEEEEe
Q 005314 667 AVVKNGVIAEK 677 (703)
Q Consensus 667 ~vl~~G~Ive~ 677 (703)
++|++|+|+|.
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 99999999974
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.6e-82 Score=785.63 Aligned_cols=507 Identities=17% Similarity=0.230 Sum_probs=417.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHH
Q 005314 181 LMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLH 260 (703)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~ 260 (703)
+++++++++..++.+++.+++...+.+...++|.++|+++++.|+.||++ +++|++++|+++|++.++..+...+..+
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnRfs~Di~~id~~l~~~~~~~ 1006 (1490)
T TIGR01271 929 YIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILNRFTKDMAIIDDMLPLTLFDF 1006 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555677788888889999999999999999999999999985 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHH
Q 005314 261 VQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKV 340 (703)
Q Consensus 261 ~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~ 340 (703)
+..++.+++.++++++++|.++++++.+++++++...++.+..+..........+.....+.|+++|+.|||+|++++.+
T Consensus 1007 ~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~ 1086 (1490)
T TIGR01271 1007 IQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYF 1086 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHH
Confidence 99998988888888888887665444433333333344444455555555666777889999999999999999999999
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 341 MELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYAC--SFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGIL 418 (703)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~ 418 (703)
.+++.+..+...+..........+......++..+..++ +++++.. ..+.|.+..++.+...+..++..+...
T Consensus 1087 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~ 1161 (1490)
T TIGR01271 1087 ETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNS 1161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988665544444333333333333332222221 1222222 234444444445555666677777788
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCCC--------------Cccc--cCCCCcEEEEEEEEEcCCCCCcccccceeE
Q 005314 419 APEASRAKSAIASVYAILDRKSKIDSSDES--------------GTTI--ENVKGDIEFQHITFKYPARPDVQIFRDLCL 482 (703)
Q Consensus 419 ~~~~~~~~~~~~~i~~il~~~~~~~~~~~~--------------~~~~--~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl 482 (703)
+.++..+..+.+|+.++++.+++.....+. ...+ .+..|.|+|+||+|+|+.. .+++|+|+||
T Consensus 1162 ~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~ 1240 (1490)
T TIGR01271 1162 SIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSF 1240 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEE
Confidence 889999999999999999876553211110 0000 1235789999999999853 4689999999
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGN 562 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~ 562 (703)
+|+|||+|||||+||||||||+++|+|+|+ ++|+|+|||+|+++++++++|++|++|||||+||+|||||||..+ . +
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~-~ 1317 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-E-Q 1317 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-c-C
Confidence 999999999999999999999999999997 799999999999999999999999999999999999999999776 3 5
Q ss_pred CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHH
Q 005314 563 ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALE 642 (703)
Q Consensus 563 ~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~ 642 (703)
.+|+++++|++.++++++|.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|++.|+
T Consensus 1318 ~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhhh
Q 005314 643 RVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 643 ~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q~ 699 (703)
+..++||+|+||||++++.+||+|+||++|+|+|.|+|++|+++ +|.|++|++.+.
T Consensus 1398 ~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1398 QSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAAD 1453 (1490)
T ss_pred HHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999985 999999998764
No 37
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-81 Score=746.14 Aligned_cols=517 Identities=24% Similarity=0.324 Sum_probs=437.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHH
Q 005314 175 DTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVG 254 (703)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~ 254 (703)
...++..+|.+++++..++..++.+.+...|.+..+.+...++++++|.|++|||. +++|+|+||+++|.+.++..+.
T Consensus 856 ~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt--TP~GRILNRFSkD~~~vD~~Lp 933 (1381)
T KOG0054|consen 856 STSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT--TPTGRILNRFSKDIDTVDVLLP 933 (1381)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC--CCccchhhhcccchHHHHHhhH
Confidence 34567777888888888888999999999999999999999999999999999996 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 005314 255 DALGLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASF 334 (703)
Q Consensus 255 ~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~ 334 (703)
..+..++++++.+++.++++-+..|...++++.+..+++.+..++.+-.+...+-....++-..++++|+++|+-|||+|
T Consensus 934 ~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf 1013 (1381)
T KOG0054|consen 934 FTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAF 1013 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeec
Confidence 99999999999999998888888886665555555555444445555555555555556667888999999999999999
Q ss_pred CchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005314 335 CAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQ 414 (703)
Q Consensus 335 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~ 414 (703)
+.++++.+++....+...+..+-....+-|...-..++..+...++....... ..+.++.|.+=..+.+...+...+..
T Consensus 1014 ~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~-~~~~~~~g~vGLslsyal~lt~~l~~ 1092 (1381)
T KOG0054|consen 1014 GKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL-PSGLISPGLVGLSLSYALQLTGLLQW 1092 (1381)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999888776655443333333334444444333333332221 22226677776677777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCC--CccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEE
Q 005314 415 SGILAPEASRAKSAIASVYAILDRKSKIDSSDES--GTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVAL 492 (703)
Q Consensus 415 ~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~--~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vai 492 (703)
+.....++.....+.+|+.+..+.++|.....+. +++.-+.+|+|+|+|++.+|..+ -++|||||||+|+|||+|+|
T Consensus 1093 ~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGI 1171 (1381)
T KOG0054|consen 1093 LVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGI 1171 (1381)
T ss_pred HHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEE
Confidence 8888999999999999999999977661111111 11122457999999999999643 36899999999999999999
Q ss_pred EcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHH
Q 005314 493 VGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAA 572 (703)
Q Consensus 493 VG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~ 572 (703)
||++|||||||++.|.|+.+|.+|+|.|||+||.++.+.+||++++++||||+||+||+|.|+--. .+.+|++||+|+
T Consensus 1172 VGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--~e~sD~~IW~AL 1249 (1381)
T KOG0054|consen 1172 VGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--DEYSDDEIWEAL 1249 (1381)
T ss_pred eCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc--cccCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999332 367999999999
Q ss_pred HHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEE
Q 005314 573 ELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVV 652 (703)
Q Consensus 573 ~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~Iv 652 (703)
+.|++.++|+++|+|+|+.|.|+|.|+|-||||-+||||||+|+++||+|||||+++|++|...||+.|++..++||+|.
T Consensus 1250 e~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVlt 1329 (1381)
T KOG0054|consen 1250 ERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLT 1329 (1381)
T ss_pred HHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHh
Q 005314 653 IAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVAL 697 (703)
Q Consensus 653 IaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~ 697 (703)
||||++|+.+||||+|||+|+|+|.|+..+|++++++.|++++..
T Consensus 1330 IAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1330 IAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred EeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 999999999999999999999999999999998878888766543
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-80 Score=773.39 Aligned_cols=539 Identities=20% Similarity=0.250 Sum_probs=432.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 133 EIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRI 212 (703)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 212 (703)
.++.++.++++.++..++..+.|+++..+++.+..+. . ......+++++++..++..++.....+...+.+.++...+
T Consensus 299 ~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l 376 (1495)
T PLN03232 299 LGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD-P-AWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTL 376 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777778888988888654321 1 1112223322222223333332222223367899999999
Q ss_pred HHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 005314 213 RSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIVLVLV--- 289 (703)
Q Consensus 213 r~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~--- 289 (703)
+..+|+|+++++..++++ +++|++++++++|++.++.++ ..+..++..++.+++++++++ +.+++.+++++
T Consensus 377 ~~~i~~k~l~l~~~~~~~--~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v~ 450 (1495)
T PLN03232 377 VAAIFHKSLRLTHEARKN--FASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLIL 450 (1495)
T ss_pred HHHHHHHHhcCChhhcCC--CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHH
Confidence 999999999999999874 789999999999999999986 444444545545544444332 22333333222
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 005314 290 PLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGIS 369 (703)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (703)
.+++.+..+..+++++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+.....++...+.
T Consensus 451 ~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~ 530 (1495)
T PLN03232 451 FLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFIL 530 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222345567778888899999999999999999999999999999999999999999888888887776665544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 005314 370 FFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESG 449 (703)
Q Consensus 370 ~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~ 449 (703)
.... ..+.++++|++++.+|.+|+|.+++++.++..+..|+..+...+..+.++..+++|+.++++.+++.....+.
T Consensus 531 ~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~- 607 (1495)
T PLN03232 531 NSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPP- 607 (1495)
T ss_pred HHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCC-
Confidence 3222 2233467788999999999999999999999999999999999999999999999999999876542211110
Q ss_pred ccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC
Q 005314 450 TTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ 529 (703)
Q Consensus 450 ~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~ 529 (703)
.....+.|+|+||+|+|+.++++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|.+.
T Consensus 608 --~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~---------- 675 (1495)
T PLN03232 608 --LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV---------- 675 (1495)
T ss_pred --cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----------
Confidence 11123479999999999865456899999999999999999999999999999999999999999773
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
++|++|+||+|+|+||+|||||||+|| . +.+++++++|++.|+++++++.||+|++|.|||+|.+|||||||||||
T Consensus 676 --~~~~~Iayv~Q~p~Lf~gTIreNI~fg-~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 751 (1495)
T PLN03232 676 --VIRGSVAYVPQVSWIFNATVRENILFG-S-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSM 751 (1495)
T ss_pred --EecCcEEEEcCccccccccHHHHhhcC-C-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHH
Confidence 468899999999999999999999999 4 378999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHH-HHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCC
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQD-ALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~-~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~ 688 (703)
|||+|++|+||||||||||||+++|++|.+ ++....++||+|+||||+++++.||+|++|++|+|+|+|+|+||+++ +
T Consensus 752 ARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~ 830 (1495)
T PLN03232 752 ARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-G 830 (1495)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-c
Confidence 999999999999999999999999998865 46667789999999999999999999999999999999999999986 8
Q ss_pred cHHHHHHHhhh
Q 005314 689 GIYASLVALQT 699 (703)
Q Consensus 689 g~Y~~l~~~q~ 699 (703)
+.|+++++.+.
T Consensus 831 ~~~~~l~~~~~ 841 (1495)
T PLN03232 831 SLFKKLMENAG 841 (1495)
T ss_pred hhHHHHHHhcc
Confidence 99999987653
No 39
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.3e-81 Score=663.89 Aligned_cols=539 Identities=23% Similarity=0.274 Sum_probs=475.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 134 IPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIR 213 (703)
Q Consensus 134 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr 213 (703)
+..++...+++.+..++....|+++-.+-|-+....+ ........++.+++.++..++..++...+.++|.++...+.
T Consensus 22 r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s--~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~ 99 (580)
T COG4618 22 RRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS--VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLN 99 (580)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444555555566667777777777776653211 22233445555666777788999999999999999999999
Q ss_pred HHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 214 SMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLV 293 (703)
Q Consensus 214 ~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~ 293 (703)
..+|....+.+..- +..|+=.+-+ +|.++++.|++..-+..+-..-.+.+.+.+.|.+++++.++.+++..+++
T Consensus 100 ~~v~~a~~~~~l~~-----~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv 173 (580)
T COG4618 100 GPVFAASFSAPLLR-----RGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILV 173 (580)
T ss_pred cHHHHHHHhhHHhh-----cCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998777663 3455444444 89999999998865555555555556667778889999999999999998
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 294 LNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLL 373 (703)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (703)
.+.++..+..++-.++..+...+.+..+..+.+|.++|++.|+.....++|.+....+...+.+..-..+...+++..+-
T Consensus 174 ~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~R 253 (580)
T COG4618 174 VLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALR 253 (580)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88899888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccc
Q 005314 374 YAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIE 453 (703)
Q Consensus 374 ~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~ 453 (703)
++....++.+|+|++.+|++|.|.+++.-.+......|+......+..+..++.+++|+.+++...+...+ ..+.+
T Consensus 254 m~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP 329 (580)
T COG4618 254 MALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLP 329 (580)
T ss_pred HHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCC
Confidence 99999999999999999999999999998888899999999999999999999999999999987654332 23445
Q ss_pred CCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH
Q 005314 454 NVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 454 ~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l 533 (703)
..+|.+.+++++|.=|+. ++++++|+||+++||+-+|||||||||||||.++|.|.+.|.+|.|++||-|+++.+.+.+
T Consensus 330 ~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 330 APQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred CCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHh
Confidence 567899999999987765 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 534 RQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
-++|||.|||..||+|||+|||+-. .+++++++|.+|++.|+.||.|.+||+||||.|||.|..|||||||||+|||||
T Consensus 409 G~hiGYLPQdVeLF~GTIaeNIaRf-~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 409 GRHIGYLPQDVELFDGTIAENIARF-GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred ccccCcCcccceecCCcHHHHHHhc-cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999876 457999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|.||.+++||||.|+||.+.|+.+.++|...+ +|.|+|+||||++.+..+|+|.||++|++...|+-+|.+++
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999999998764 68999999999999999999999999999999999998864
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-79 Score=768.51 Aligned_cols=541 Identities=19% Similarity=0.242 Sum_probs=430.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 131 KPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIK 210 (703)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 210 (703)
+.+++.+++++++.++..++..+.|+++..+++.+..+. .. .....+++++++..++..+...-..+...+++.++..
T Consensus 297 ~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~ 374 (1622)
T PLN03130 297 NSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE-PA-WIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRS 374 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777777777788888988887654321 11 1111222222211222221111111223578999999
Q ss_pred HHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 005314 211 RIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFE-ANWQLALIVLVLV 289 (703)
Q Consensus 211 ~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~lalv~l~~~ 289 (703)
.++..+|+|+++++..++.+ .++|++++++++|++.++.++.. +..++..++.+++++++++. +.| .+++.++++
T Consensus 375 ~L~~~i~~k~L~l~~~~~~~--~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~-~~l~g~~v~ 450 (1622)
T PLN03130 375 TLVAAVFRKSLRLTHEGRKK--FTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGV-ASLIGSLML 450 (1622)
T ss_pred HHHHHHHHHHhcCChhhcCC--CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999874 78999999999999999998744 45555555555555544433 222 222222233
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 005314 290 PLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGIS 369 (703)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (703)
.+++++..+..+++++..++..+..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+..++.....++...+.
T Consensus 451 ~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~ 530 (1622)
T PLN03130 451 VLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFIL 530 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566777788888899999999999999999999999999999999999988887777777666655444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 005314 370 FFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESG 449 (703)
Q Consensus 370 ~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~ 449 (703)
..+.. .+.++++|++++..|.+|+|.+++++.++..+..|+..+...+..+.++..+++|+.++++.++......+.
T Consensus 531 ~~~~~--~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~- 607 (1622)
T PLN03130 531 NSIPV--LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPP- 607 (1622)
T ss_pred HHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCc-
Confidence 33222 345667788888999999999999999999999999999999999999999999999999865432111110
Q ss_pred ccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCC-CeEEECCeeCCCC
Q 005314 450 TTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT-GHITLDGVEIQKL 528 (703)
Q Consensus 450 ~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~-G~I~idG~di~~~ 528 (703)
.....+.|+|+||+|+|+.++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++ |+|.+
T Consensus 608 --~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------- 677 (1622)
T PLN03130 608 --LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------- 677 (1622)
T ss_pred --ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--------
Confidence 0111357999999999986545689999999999999999999999999999999999999999 99974
Q ss_pred CHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 529 QLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 529 ~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
|++|+||+|+|+||+|||||||+|| .+ .+++++++|++.|+++++|+.||+|++|.|||+|.+||||||||||
T Consensus 678 -----~~~Iayv~Q~p~LfngTIreNI~fg-~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa 750 (1622)
T PLN03130 678 -----RGTVAYVPQVSWIFNATVRDNILFG-SP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750 (1622)
T ss_pred -----cCeEEEEcCccccCCCCHHHHHhCC-Cc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH
Confidence 5699999999999999999999999 43 6899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHH-HHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccC
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQ-DALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVK 687 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~-~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~ 687 (703)
||||+|++|+||||||||||||++++++|. +++....++||+|+||||+++++.||+|++|++|+|+|+|+|+||+++
T Consensus 751 LARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~- 829 (1622)
T PLN03130 751 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN- 829 (1622)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-
Confidence 999999999999999999999999999875 567777789999999999999999999999999999999999999986
Q ss_pred CcHHHHHHHhh
Q 005314 688 DGIYASLVALQ 698 (703)
Q Consensus 688 ~g~Y~~l~~~q 698 (703)
++.|+++++.+
T Consensus 830 ~~~~~~l~~~~ 840 (1622)
T PLN03130 830 GPLFQKLMENA 840 (1622)
T ss_pred chhHHHHHHhc
Confidence 89999998754
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.4e-76 Score=675.16 Aligned_cols=529 Identities=19% Similarity=0.192 Sum_probs=415.7
Q ss_pred hHhhCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 127 ASLNKPEIPALLLGSIAAGVLGVMLPIL-GILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAG 205 (703)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 205 (703)
..+.+++++.++++++++++..++.... +++...+++.... . ......+ +++.++..++.+++.|...+++
T Consensus 5 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~--~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 76 (547)
T PRK10522 5 RLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT--S--LLVLPEF----LGLLLLLMAVTLGSQLALTTLG 76 (547)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--c--chHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777776665553 5566667765421 0 0111111 1122223456678888899999
Q ss_pred HHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 206 CKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIV 285 (703)
Q Consensus 206 ~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~ 285 (703)
.++..++|..+|++++++|++||++ +++|++++|+++|++.+..++. .++.++..++.+++.++++++++|.+++++
T Consensus 77 ~~~~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~ 153 (547)
T PRK10522 77 HHFVYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVT 153 (547)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999985 7999999999999999998765 467778888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCch---HHHHHHHHHHHhcHHHHHHHHHHHH
Q 005314 286 LVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAE---EKVMELYQKKCGGPSKKGIKQGLIG 362 (703)
Q Consensus 286 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (703)
++++|+++++.++..++.++...+..+..++..+.+.|.++|+++++ ++.+ +.+.++|++..++..+...+.....
T Consensus 154 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PRK10522 154 AIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFH 232 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Confidence 99999988888888888888888889999999999999999999996 4443 4567888888887777766666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 005314 363 GVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKI 442 (703)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~ 442 (703)
.....+.+++..+...+.+++++.. +..+.+.+..+.++......|+..+.....++..+..+++|++++++.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~ 309 (547)
T PRK10522 233 LSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKA 309 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 5444444333333333334444332 1223333333333444466789999999999999999999999997654322
Q ss_pred CCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC
Q 005314 443 DSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG 522 (703)
Q Consensus 443 ~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG 522 (703)
+.+.+ ...+ ..+.|+|+||+|+||++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 310 ~~~~~--~~~~-~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 384 (547)
T PRK10522 310 EFPRP--QAFP-DWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (547)
T ss_pred ccccc--cccC-cCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 11111 1111 13579999999999843 4699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 523 VEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 523 ~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
+|+++++.+++|++|+||+|||++|++|++|| + + ++++++++++++.+++.+++. +|+|. .+|.+||||
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LSgG 453 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLSKG 453 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCCHH
Confidence 99999999999999999999999999999999 4 2 577888888877777766554 24442 248999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCEEEEe-cC
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEK-GK 679 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~-Gt 679 (703)
|||||+||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |+
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~ 533 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGE 533 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCC
Confidence 9999999999999999999999999999999999999997654 48999999999999999999999999999986 67
Q ss_pred hhHHhcc
Q 005314 680 HETLVHV 686 (703)
Q Consensus 680 h~eLl~~ 686 (703)
|.+-..+
T Consensus 534 ~~~~~~~ 540 (547)
T PRK10522 534 ERDAASR 540 (547)
T ss_pred chhhhhh
Confidence 7665443
No 42
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-74 Score=684.44 Aligned_cols=545 Identities=22% Similarity=0.251 Sum_probs=454.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 131 KPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIK 210 (703)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 210 (703)
+-+++.+++..++..+...+.-+.|.++...|+.+.++ .........|++.+++..++..++.....+...+.|.+++.
T Consensus 197 ~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~-~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~ 275 (1381)
T KOG0054|consen 197 RTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEK-RLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRS 275 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCC-CcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHH
Confidence 33566666666666666666667788898988876543 22223345566555555556655555555556788999999
Q ss_pred HHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 211 RIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIVLVLVP 290 (703)
Q Consensus 211 ~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~ 290 (703)
.+-..+|+|.++++...-. +.++|+++|.++.|++++.++.......|...+..+++...+...++| -+++.++++.
T Consensus 276 al~~~IY~K~L~ls~~~~~--~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~-sa~~G~~~~i 352 (1381)
T KOG0054|consen 276 ALISAIYRKALRLSNSARG--ETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGP-SALAGVAVMV 352 (1381)
T ss_pred HHHHHHHHhhhcCchhhcc--CCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHH
Confidence 9999999999999887543 478999999999999999999877776666555555554444445666 3455555556
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 005314 291 LLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISF 370 (703)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (703)
+++.+..+..++.++++.+.++..+++.+.++|.++|||+||.|+||+.+.++.++..++..+.-.|...+.++...+..
T Consensus 353 l~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~ 432 (1381)
T KOG0054|consen 353 LLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNF 432 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677888899999999999999999999999999999999999999999999999999999999888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCc
Q 005314 371 FLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGT 450 (703)
Q Consensus 371 ~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~ 450 (703)
+...++.++.|..... ...+.++...+|.++.++...-.|+..+...+..+.++.++++|+.+++..++........ .
T Consensus 433 ~~p~lv~~~tF~~~v~-~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~-~ 510 (1381)
T KOG0054|consen 433 FSPVLVSVVTFVVFVL-LLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER-S 510 (1381)
T ss_pred HHHHHHHHHHHHHHhh-ccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc-C
Confidence 7777776666655433 4567788889999999999999999999999999999999999999999875432211110 1
Q ss_pred cccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH
Q 005314 451 TIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL 530 (703)
Q Consensus 451 ~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~ 530 (703)
+.......|+++|.+|++......+.|+||||+|++|+.+||||+.|||||+|+..|+|-.+..+|+|.++|
T Consensus 511 ~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------- 582 (1381)
T KOG0054|consen 511 PDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------- 582 (1381)
T ss_pred CCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC--------
Confidence 112233479999999999863344699999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
.+|||||+||+|+|||||||.|| . +.+++.+.++++.|++...++.||.|..|.|||||.+|||||||||+||
T Consensus 583 -----siaYv~Q~pWI~ngTvreNILFG-~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA 655 (1381)
T KOG0054|consen 583 -----SVAYVPQQPWIQNGTVRENILFG-S-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA 655 (1381)
T ss_pred -----eEEEeccccHhhCCcHHHhhhcC-c-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence 49999999999999999999999 4 4789999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHH-HHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCc
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVI-QDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDG 689 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v-~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g 689 (703)
||+|+|++|+|||+|.||+|+++.++| .++|....++||+|+|||+++.+++||+|+||+||+|+|+|+|+||++. ++
T Consensus 656 RAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~ 734 (1381)
T KOG0054|consen 656 RAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS-GG 734 (1381)
T ss_pred HHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc-ch
Confidence 999999999999999999999988877 5666677889999999999999999999999999999999999999986 88
Q ss_pred HHHHHHHh
Q 005314 690 IYASLVAL 697 (703)
Q Consensus 690 ~Y~~l~~~ 697 (703)
.|.+|...
T Consensus 735 ~~~~l~~~ 742 (1381)
T KOG0054|consen 735 DFAELAHE 742 (1381)
T ss_pred hHHHHhhc
Confidence 99988543
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.6e-72 Score=704.99 Aligned_cols=543 Identities=20% Similarity=0.243 Sum_probs=433.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 133 EIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRI 212 (703)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 212 (703)
+++.++.++++.++..++..+.|+++..+++.+..+... ......++.+++++.++..++.....+...+.+.++...+
T Consensus 315 ~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L 393 (1522)
T TIGR00957 315 FGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAP-DWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAV 393 (1522)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677777777777888898888865443211 1112233334444444555554444555778899999999
Q ss_pred HHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 213 RSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLL 292 (703)
Q Consensus 213 r~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~ 292 (703)
+..+|+|+++++...+++ .++|++++++++|++.+..+.. .+..++..++.+++++++++..-...+++.+++++++
T Consensus 394 ~~~iy~K~L~l~~~~~~~--~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~ 470 (1522)
T TIGR00957 394 MGAVYRKALVITNSARKS--STVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLM 470 (1522)
T ss_pred HHHHHHHHHhCChhhcCC--CCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999998874 7899999999999999988663 4555555555555555544432222344555555666
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 005314 293 VLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFL 372 (703)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (703)
++...+..+.+++...+..+..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+...+..+...+....
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 550 (1522)
T TIGR00957 471 VPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCT 550 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777888889999999999999999999999999999999999999999999888877766666655433332222
Q ss_pred HHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCc
Q 005314 373 LYAVYACSFYAGARLVE--AGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGT 450 (703)
Q Consensus 373 ~~~~~~~~~~~g~~lv~--~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~ 450 (703)
..++ .++.++++++. .+.++.+.++.++.++..+..|+..+...+..+.++..+++|+.++++.+++.........
T Consensus 551 ~~~~--~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~ 628 (1522)
T TIGR00957 551 PFLV--ALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRT 628 (1522)
T ss_pred HHHH--HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccc
Confidence 2222 22233445555 3568899999988888888899999999999999999999999999986543211100000
Q ss_pred cccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH
Q 005314 451 TIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL 530 (703)
Q Consensus 451 ~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~ 530 (703)
..+...+.|+++|++|+|+.. ++++|+|+||+|++|++++||||||||||||+++|+|+++|++|+|.+||
T Consensus 629 ~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 699 (1522)
T TIGR00957 629 IKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------- 699 (1522)
T ss_pred cCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------
Confidence 001112479999999999853 45799999999999999999999999999999999999999999999998
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
+||||+|+|++|++||+|||.+|. +.+++++.++++.+++.+++..+|+|++|.+|++|.+|||||||||+||
T Consensus 700 -----~i~yv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 700 -----SVAYVPQQAWIQNDSLRENILFGK--ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred -----EEEEEcCCccccCCcHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence 699999999999999999999994 2567889999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHH---HcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccC
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALER---VMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVK 687 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~---~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~ 687 (703)
||++++|+|+||||||||||+++++.|.+.+.+ ..+++|+|+|||+++.++.||+|++|++|+|+++|+|++|+++
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~- 851 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR- 851 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-
Confidence 999999999999999999999999999999853 4578999999999999999999999999999999999999986
Q ss_pred CcHHHHHHHhh
Q 005314 688 DGIYASLVALQ 698 (703)
Q Consensus 688 ~g~Y~~l~~~q 698 (703)
++.|.+++..+
T Consensus 852 ~~~~~~l~~~~ 862 (1522)
T TIGR00957 852 DGAFAEFLRTY 862 (1522)
T ss_pred chhHHHHHHhh
Confidence 89999988643
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=7.8e-72 Score=649.58 Aligned_cols=528 Identities=16% Similarity=0.132 Sum_probs=447.5
Q ss_pred HHHHhHhhCChhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005314 123 LCRLASLNKPEIP-----ALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPAD-ELRKDTDFWALMYLFLAIACLLAHPL 196 (703)
Q Consensus 123 ~~~l~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (703)
+++++++.+|+|. .+++.+++.++..++....|++.+.+++.+..... .+......|+++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999887 56777777788888888999999999998765321 12112334445555566666777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 197 RSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFE 276 (703)
Q Consensus 197 ~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~ 276 (703)
+.++....+.++..+++.+.|++....++.+||+ ++|++.+|+++|++.+...+...+..++..++.+++++++++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999988899999973 6899999999999999999999999999999999888877775
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHH
Q 005314 277 -ANWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKG 355 (703)
Q Consensus 277 -~~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~ 355 (703)
++|.+++++++.+|+..++..++.+.+.+...+..+..++....+.|.++|+++||+|+.|+.+.+++++..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHH
Q 005314 356 IKQGLIGGVAFGISFFLLYA--VYACSFYAGARLVE-A----GKTTFQEVFR-VFFA---LSMAATGLSQSGILAPEASR 424 (703)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv~-~----g~~s~g~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~ 424 (703)
.+..++.+....+..++... ..++.++.|...+. . |.+|+|.+++ ++.+ +..+..|+..+.....++++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888653 33333344443332 2 7899998776 3333 44557889999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCC--------C-CC-------------CccccCCCCcEEEEEEEEEcCCCCCcccccceeE
Q 005314 425 AKSAIASVYAILDRKSKIDSS--------D-ES-------------GTTIENVKGDIEFQHITFKYPARPDVQIFRDLCL 482 (703)
Q Consensus 425 ~~~~~~~i~~il~~~~~~~~~--------~-~~-------------~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl 482 (703)
+..+.+|++++++.+++.+.. + +. ........+.|+++||+|+||++ +++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 999999999999764432100 0 00 00111123579999999999843 479999999
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCC--
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-- 560 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-- 560 (703)
+|++||++||+||||||||||+++|+|+|+|++|+|.+++ |++|+||+|+|++|++|++|||.++..
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 678999999999999999999999731
Q ss_pred ----CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHH
Q 005314 561 ----GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERV 636 (703)
Q Consensus 561 ----~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~ 636 (703)
++.++++++++++.+++++++.. |.||||..+ .+.+||||||||++||||++++|++||||||||+||+++|+.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 34678899999999999999988 999999987 577999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q 005314 637 IQDALERVMVGRTTVVIAHRLSTIRDADLIAVVK 670 (703)
Q Consensus 637 v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~ 670 (703)
+.+.+.+. ++|+|+||||+++++.||+|++|+
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEe
Confidence 99999874 899999999999999999999997
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.7e-68 Score=666.72 Aligned_cols=535 Identities=18% Similarity=0.227 Sum_probs=433.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 133 EIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADE-LRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKR 211 (703)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 211 (703)
+++.+++.++..++..++..+.|+++..+++.+ .+... .......+++.++++.++..++.....|...+.+.+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~ 156 (1490)
T TIGR01271 78 FFWRFVFYGILLYFGEATKAVQPLLLGRIIASY-DPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIA 156 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555565666677788888888765 32111 1112233444445555566666666777778899999999
Q ss_pred HHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 212 IRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIVLVLVPL 291 (703)
Q Consensus 212 lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l 291 (703)
+...+|+|+++++...+++ .++|++++++++|++.+...+..... ++..++.+++++++++....+.+++.++++++
T Consensus 157 L~~~iy~K~L~l~~~~~~~--~~~g~i~nl~s~Dv~~i~~~~~~~~~-~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~ 233 (1490)
T TIGR01271 157 LFSLIYKKTLKLSSRVLDK--ISTGQLVSLLSNNLNKFDEGLALAHF-VWIAPLQVILLMGLIWELLEVNGFCGLGFLIL 233 (1490)
T ss_pred HHHHHHHHHHhCCHHHhcC--CCHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 68999999999999999998766544 34455555555555554444467777888888
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 005314 292 LVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFF 371 (703)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (703)
++++..+..+++.++..+.++..+++.+.+.|.++||++||.|+||+.+.+++++..+...+...+...+..+...+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~ 313 (1490)
T TIGR01271 234 LALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFF 313 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999998888888877766444443333
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCc
Q 005314 372 LLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLS-QSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGT 450 (703)
Q Consensus 372 ~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~ 450 (703)
...+ +.++.++++.+..+ .+.+.+|.++.++..+..++. .+...+..+.++..+++||.++++.++.... ..
T Consensus 314 ~~~~--~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~-~~--- 386 (1490)
T TIGR01271 314 SGFF--VVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL-EY--- 386 (1490)
T ss_pred HHHH--HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-cc---
Confidence 3332 33444455655544 688999988888888777764 6888899999999999999999986543111 00
Q ss_pred cccCCCCcEEEEEEEEEcCCCC-------------------------------CcccccceeEEeeCCCEEEEEcCCCCC
Q 005314 451 TIENVKGDIEFQHITFKYPARP-------------------------------DVQIFRDLCLAIPSGKMVALVGESGSG 499 (703)
Q Consensus 451 ~~~~~~~~I~~~~vsF~Y~~~~-------------------------------~~~vL~~isl~I~~G~~vaiVG~SGsG 499 (703)
......|+++|++|.|+... .+++|+|+||+|++|++++|+||+|||
T Consensus 387 --~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsG 464 (1490)
T TIGR01271 387 --NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSG 464 (1490)
T ss_pred --cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCC
Confidence 01124699999999996310 136899999999999999999999999
Q ss_pred hHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHH
Q 005314 500 KSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQ 579 (703)
Q Consensus 500 KSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~ 579 (703)
||||+++|+|+++|++|+|.++| +|+||+|+|++|++||+|||.|| . ..+++++.++++.+++.+
T Consensus 465 KSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g-~-~~~~~~~~~~~~~~~L~~ 529 (1490)
T TIGR01271 465 KSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFG-L-SYDEYRYTSVIKACQLEE 529 (1490)
T ss_pred HHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhc-c-ccchHHHHHHHHHHhHHH
Confidence 99999999999999999999998 59999999999999999999999 3 256677888899999999
Q ss_pred HHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHH-HHHHcCCceEEEEccCch
Q 005314 580 FISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDA-LERVMVGRTTVVIAHRLS 658 (703)
Q Consensus 580 ~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~-l~~~~~~rT~IvIaHrls 658 (703)
++..+|+|++|.||++|.+|||||||||+||||++++|+||||||||||||+++++.|.+. +..+.+++|+|+|||+++
T Consensus 530 ~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~ 609 (1490)
T TIGR01271 530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLE 609 (1490)
T ss_pred HHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChH
Confidence 9999999999999999999999999999999999999999999999999999999999974 677778999999999999
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHH
Q 005314 659 TIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696 (703)
Q Consensus 659 ti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~ 696 (703)
.++.||+|++|++|+|++.|+|+++.+. ++.|.+++.
T Consensus 610 ~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~ 646 (1490)
T TIGR01271 610 HLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLL 646 (1490)
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHh
Confidence 9999999999999999999999999975 777877763
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.7e-67 Score=653.40 Aligned_cols=547 Identities=18% Similarity=0.211 Sum_probs=441.3
Q ss_pred hCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 130 NKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLI 209 (703)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (703)
.+..++.+++++++.++..++..+.|+++..+++.+..+ +........++++++++.++..++.....+...+.+.++.
T Consensus 239 ~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r 317 (1560)
T PTZ00243 239 FAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDAD-NATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYR 317 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777777777777888888888754322 2111112223333444455555666666677888999999
Q ss_pred HHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 210 KRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIVLVLV 289 (703)
Q Consensus 210 ~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~ 289 (703)
..++..+|+|+++++...+..++.++|++++++++|++.++.++.... .++..++.+++++++++.+-.+.+++.++++
T Consensus 318 ~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~-~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl 396 (1560)
T PTZ00243 318 SALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCM-YLWSSPMVLLLSILLLSRLVGWCALMAVAVL 396 (1560)
T ss_pred HHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999887765557899999999999999999986654 4555666666666666554444777777777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 005314 290 PLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGIS 369 (703)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (703)
++++.+..+..+++....++..+..+++.+.++|.++|||+||.++||+.+.+++++..++..+...+......+...+.
T Consensus 397 ~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~ 476 (1560)
T PTZ00243 397 LVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVN 476 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888889999999999999999999999999999999999999999999988888888777777666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----CC
Q 005314 370 FFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKI-----DS 444 (703)
Q Consensus 370 ~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~-----~~ 444 (703)
.....+..+++ ++++.+..+.+|.+.+|+++.++..+..|+..+...+..+.++..+++||.++++.++.. +.
T Consensus 477 ~~~p~l~~~~~--f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 554 (1560)
T PTZ00243 477 NATPTLMIAVV--FTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDM 554 (1560)
T ss_pred HHHHHHHHHHH--HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccc
Confidence 55555444443 456777889999999999999999999999999999999999999999999999765310 00
Q ss_pred CC---------C--C--------------Ccc---------------------------ccCCCCcEEEEEEEEEcCCC-
Q 005314 445 SD---------E--S--------------GTT---------------------------IENVKGDIEFQHITFKYPAR- 471 (703)
Q Consensus 445 ~~---------~--~--------------~~~---------------------------~~~~~~~I~~~~vsF~Y~~~- 471 (703)
.+ . . +.. .....+.+.++|++|++|..
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1560)
T PTZ00243 555 EEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSA 634 (1560)
T ss_pred hhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccc
Confidence 00 0 0 000 00011357888888876421
Q ss_pred ------------------------------------CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCC
Q 005314 472 ------------------------------------PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT 515 (703)
Q Consensus 472 ------------------------------------~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~ 515 (703)
.++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~ 714 (1560)
T PTZ00243 635 SRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE 714 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 12458999999999999999999999999999999999999999
Q ss_pred CeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCC
Q 005314 516 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGER 595 (703)
Q Consensus 516 G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~ 595 (703)
|+|.++ ++||||+|+|++|++||+|||.++ .+ .+++++.++++.++++++++.+|+|++|.+|++
T Consensus 715 G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~-~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~ 779 (1560)
T PTZ00243 715 GRVWAE-------------RSIAYVPQQAWIMNATVRGNILFF-DE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEK 779 (1560)
T ss_pred cEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcC-Ch-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCC
Confidence 999863 589999999999999999999998 32 456778999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHH-HHHHcCCceEEEEccCchHHhhcCEEEEEeCCEE
Q 005314 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDA-LERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVI 674 (703)
Q Consensus 596 G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~-l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~I 674 (703)
|.+|||||||||+||||++.+|+|||||||||+||+++++.+.+. +....+++|+|+|||+++.++.||+|++|++|+|
T Consensus 780 g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i 859 (1560)
T PTZ00243 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859 (1560)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999988887654 4455578999999999999999999999999999
Q ss_pred EEecChhHHhccCCcHHHHHHHh
Q 005314 675 AEKGKHETLVHVKDGIYASLVAL 697 (703)
Q Consensus 675 ve~Gth~eLl~~~~g~Y~~l~~~ 697 (703)
+++|+|+++++ ++.|.++...
T Consensus 860 ~~~G~~~~l~~--~~~~~~~~~~ 880 (1560)
T PTZ00243 860 EFSGSSADFMR--TSLYATLAAE 880 (1560)
T ss_pred EEecCHHHHHh--ChHHHHHHHh
Confidence 99999999986 4578888754
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.2e-56 Score=466.42 Aligned_cols=237 Identities=25% Similarity=0.453 Sum_probs=223.2
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
|.|+|+||+|+|+.. +.++|+|+||+|++||+++|||+||||||||+++|.|+++ ++|+|.+||.++..++..++|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999743 3579999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 537 MGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 537 i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
|+||||+|.+|++|+++|+.+. . ..++++++++++.+++++++..+|+||+|.++|+|.+||||||||++||||++++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~-~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPY-G-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhc-c-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999643 2 2568899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHH
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~ 696 (703)
|+||||||||++||+++.+.+++.|.+..+++|+|+||||+.+++.||+|++|++|+|++.|++++|++. .+.|++++.
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~ 235 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAIS 235 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHh
Confidence 9999999999999999999999999988789999999999999999999999999999999999999985 788888886
Q ss_pred hh
Q 005314 697 LQ 698 (703)
Q Consensus 697 ~q 698 (703)
..
T Consensus 236 ~~ 237 (275)
T cd03289 236 PS 237 (275)
T ss_pred hc
Confidence 54
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-53 Score=406.42 Aligned_cols=218 Identities=34% Similarity=0.522 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC-CCCHHHHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ-KLQLKWLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~-~~~~~~lR~~ 536 (703)
-|+++||+.+|. +..||+||||+|++||.++|+||||||||||+++|.++-.|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999997 457999999999999999999999999999999999999999999999998773 3378999999
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCCC---CCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 537 MGLVSQEPVLFN-DTVRVNIAYGKEG---NATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 537 i~~V~Qe~~LF~-gTIreNI~~g~~~---~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
+|+|+|...||. -|+.|||+++ +- ..+.+| -.+.++++|+.|-. .....+|||||+||+|
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~la-p~~v~~~~k~eA~~~A~~lL~~VGL~~ka-----------~~yP~qLSGGQqQRVA 146 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKALELLEKVGLADKA-----------DAYPAQLSGGQQQRVA 146 (240)
T ss_pred cCeecccccccccchHHHHHHhh-hHHHcCCCHHHHHHHHHHHHHHcCchhhh-----------hhCccccCcHHHHHHH
Confidence 999999999995 5999999998 31 223333 23334445544443 3456899999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|||||.-+|+++|+||||||||||.-..|.+.+..++ .|-|.|+|||.+...+. ||||+.|++|+|+|+|+.+++..+
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999999876 47899999999999977 999999999999999999999876
Q ss_pred CCcH
Q 005314 687 KDGI 690 (703)
Q Consensus 687 ~~g~ 690 (703)
+...
T Consensus 227 p~~~ 230 (240)
T COG1126 227 PKSE 230 (240)
T ss_pred CCCH
Confidence 5433
No 49
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-52 Score=445.79 Aligned_cols=223 Identities=30% Similarity=0.457 Sum_probs=198.5
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCC--CC
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQ--KL 528 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~--~~ 528 (703)
.+.|+|+||+|+|++. ..++|+|+||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+++. ..
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4689999999999743 3579999999999999999999999999999999999997 57999999999997 44
Q ss_pred CHHHHhcceEEEccCCCCCcccHHHHHhcCCCC-CCCHHH-----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 529 QLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-NATEAE-----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 529 ~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~~t~~e-----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
....+|+.++||||+|++|++|++|||.|+... ..++++ +.++++.+++ ++++++.++++|.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 567899999999999999999999999987211 234444 3445555554 456678999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChh
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~ 681 (703)
|||||+||||++++|+|||||||||+||+++.+.+++.|.++.+++|+|+|||++.++.. ||+|+||++|+|+|.|+++
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998889999999999999987 9999999999999999999
Q ss_pred HHhcc
Q 005314 682 TLVHV 686 (703)
Q Consensus 682 eLl~~ 686 (703)
++...
T Consensus 310 ~l~~~ 314 (329)
T PRK14257 310 TIFIH 314 (329)
T ss_pred HHhcC
Confidence 99864
No 50
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.7e-51 Score=422.82 Aligned_cols=236 Identities=49% Similarity=0.824 Sum_probs=220.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|+.+ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+..++|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999743 356999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
|++|++.+|+.|++|||.++. ...+.+++.++++..++++++..+|.|+++.....+.+||||||||++||||++.+|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALAD-PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999873 3455677888888899999999999999999999999999999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHh
Q 005314 619 ILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVAL 697 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~ 697 (703)
+|||||||++||+.+.+.+.+.|.++.+++|+|++||++..+..||+|++|++|++++.|+.+++++. .+.|+.++..
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~~ 236 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQL 236 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHhc
Confidence 99999999999999999999999998778999999999999989999999999999999999999986 8899887753
No 51
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.7e-51 Score=423.77 Aligned_cols=242 Identities=34% Similarity=0.583 Sum_probs=225.0
Q ss_pred CCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH
Q 005314 454 NVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 454 ~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l 533 (703)
...+.|+++||+|+|+.. +.++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 356889999999999753 3579999999999999999999999999999999999999999999999999999988899
Q ss_pred hcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 534 RQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
|+.|+||+|+|.+|++|++||+.+. . ....+++.++++.+++++++..+|.|++|.+++.+.+||||||||++||||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPE-C-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcC-C-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999765 2 2346678889999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHH
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYAS 693 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~ 693 (703)
+++|++|||||||++||++++..+.+.+.++.+++|+|++||+++.+..||+|++|++|+|++.|+++++++..++.|++
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~ 251 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFAS 251 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHH
Confidence 99999999999999999999999999999887789999999999999999999999999999999999999865788998
Q ss_pred HHHhh
Q 005314 694 LVALQ 698 (703)
Q Consensus 694 l~~~q 698 (703)
+|..|
T Consensus 252 ~~~~~ 256 (257)
T cd03288 252 LVRTD 256 (257)
T ss_pred HHhcc
Confidence 88754
No 52
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-51 Score=414.29 Aligned_cols=218 Identities=36% Similarity=0.567 Sum_probs=190.8
Q ss_pred EEEEEEEEEcCCC--CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC---HHHH
Q 005314 459 IEFQHITFKYPAR--PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ---LKWL 533 (703)
Q Consensus 459 I~~~~vsF~Y~~~--~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~---~~~l 533 (703)
|+|++||+.|+.. +...+|+|+||+|++|++.+|||.||+|||||++++-++-.|++|+|.+||+|+..++ ++.+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999862 2357999999999999999999999999999999999999999999999999888877 6677
Q ss_pred hcceEEEccCCCCCc-ccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 534 RQQMGLVSQEPVLFN-DTVRVNIAYGKE-GNATEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~-gTIreNI~~g~~-~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
|++||+++|++.|++ -|+.+||+|-.. ...+.+ ++.+.++.+|+.|+. +....|||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~-----------~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKA-----------DRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------ccCchhcCcchhhHH
Confidence 899999999999998 799999999731 123333 345556666555544 445689999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHh
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl 684 (703)
+|||||..+|+|||.|||||||||+|.+.|.+.|.++- -|-|+++|||-+..+++ |||++||++|+|+|+|+-.++-
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998753 38899999999999987 9999999999999999999988
Q ss_pred ccC
Q 005314 685 HVK 687 (703)
Q Consensus 685 ~~~ 687 (703)
..|
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 765
No 53
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-51 Score=392.66 Aligned_cols=221 Identities=32% Similarity=0.480 Sum_probs=199.8
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCC-----CeEEECCeeCCC--CC
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT-----GHITLDGVEIQK--LQ 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~-----G~I~idG~di~~--~~ 529 (703)
..++++||+|.|. ++.+|+|||+.|++++.+|++|||||||||+++.+-|+.|..+ |+|.++|+||.+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999997 4679999999999999999999999999999999999999987 999999999966 57
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCCC-----CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-----NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-----~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
.-.+|++||.|+|.|.-|..||+|||+||.+- ..-++-++++++.|.++|.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 99999999999999999999999999999311 1223457899999999887743 24467889999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||+||||||.-+|+|||||||||||||.+...|.+.|.+++++=|+|+|||.+... +-+|+..++-+|++||.|+-+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 99999999999999999999999999999999999999999999999999999976 55999999999999999999998
Q ss_pred hccC
Q 005314 684 VHVK 687 (703)
Q Consensus 684 l~~~ 687 (703)
-.+|
T Consensus 236 F~~P 239 (253)
T COG1117 236 FTNP 239 (253)
T ss_pred hcCc
Confidence 7653
No 54
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-50 Score=410.36 Aligned_cols=235 Identities=55% Similarity=0.860 Sum_probs=219.4
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++++|++. .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999742 46999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
|++|++.+|++|++||+.++ ..+.+++++.++++..++.+++..+|.|++|.+..+..+||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYG-RPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhc-CCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 33456777888899999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHh
Q 005314 619 ILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVAL 697 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~ 697 (703)
+|||||||++||+++.+.+.+.|.++.+++|+|++||++..+..||++++|++|++++.|+.+++.+. .+.|++++..
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~ 235 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA 235 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence 99999999999999999999999988778999999999999999999999999999999999999875 7788877754
No 55
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-51 Score=400.04 Aligned_cols=219 Identities=32% Similarity=0.523 Sum_probs=194.6
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+|+|||++|. +..+++|+||+|++||++.++|||||||||++++|.|+++|++|+|+|||.++++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999997 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC-cccHHHHHhcCCCC--CCCH----HHHHHHHHHhcHH--HHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 539 LVSQEPVLF-NDTVRVNIAYGKEG--NATE----AEVLAAAELANAH--QFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 539 ~V~Qe~~LF-~gTIreNI~~g~~~--~~t~----~ei~~A~~~a~l~--~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
||-|..-|| +.||.|||++- +. .-++ +++.+.+++.++. +|..+.| .+|||||.||+.+
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 999999999 56999999886 31 1233 3456666666664 3555544 7899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-HhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLST-IRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlst-i~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
||||..+|+|||+|||++|||+-+.+.+|+-+.++.+ ++|+|+|||++.. ++-||||++|++|+|+..|+.++++++
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999987644 8999999999985 688999999999999999999999987
Q ss_pred CCcHHH
Q 005314 687 KDGIYA 692 (703)
Q Consensus 687 ~~g~Y~ 692 (703)
|...|-
T Consensus 227 Pan~FV 232 (309)
T COG1125 227 PANDFV 232 (309)
T ss_pred ccHHHH
Confidence 654443
No 56
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-49 Score=408.79 Aligned_cols=233 Identities=59% Similarity=0.938 Sum_probs=216.6
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++++|+++ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999753 246999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
|++|++.+|+.|++||+.++. .+.+.+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGR-PGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999983 3456677888888899999999999999999999999999999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHH
Q 005314 619 ILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASL 694 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l 694 (703)
+|||||||++||+.+...+.+.|.++.+++|+|++||++..+..||+|++|++|++++.|+.+++.+. .+.|+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 99999999999999999999999998888999999999999999999999999999999999999875 7666654
No 57
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-49 Score=405.96 Aligned_cols=227 Identities=49% Similarity=0.841 Sum_probs=213.1
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
+.|+++|++|+|++ ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46899999999973 2469999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 537 MGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 537 i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
++|++|++.+|.+|++||+.++ ..+.+.+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLG-RPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhhHHHHHHhcc-CCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998 334566788888999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|++|||||||++||+.+.+.+.+.|.++.+++|+|+|||++..+..||+|++|++|++++.|+.+++++.
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999999988778999999999999999999999999999999999998764
No 58
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-47 Score=389.40 Aligned_cols=518 Identities=20% Similarity=0.229 Sum_probs=384.5
Q ss_pred HhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 126 LASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAG 205 (703)
Q Consensus 126 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 205 (703)
++-+.++++..++..+.++++.++.....-.++.... .+.. +.......| |+++.++..+...+........|
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al---~e~~-~~~~~~l~~---f~~llllf~~ss~is~lg~t~~g 76 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGLLAFINQAL---IETA-DTSLLVLPE---FLGLLLLFMVSSLISQLGLTTLG 76 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhc-ccceeeHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667666666656666655554333222222221 1111 111122333 33333334444556666777899
Q ss_pred HHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 206 CKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIV 285 (703)
Q Consensus 206 ~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~ 285 (703)
+.+..++|.++.+|++..|+.-+++ -+++.++.++++|+..+. +....++.+++..+.++++.+++.+.++++.+++
T Consensus 77 q~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~ 153 (546)
T COG4615 77 QHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLT 153 (546)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999985 789999999999999998 6667888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHH----HHHH
Q 005314 286 LVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIK----QGLI 361 (703)
Q Consensus 286 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~----~~~~ 361 (703)
++.+.+.++..++.+++..+.....++..++........++|.++++...- +....+++......+...+ ....
T Consensus 154 vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~--R~~~~h~~~~~~~a~~~r~~~~~~n~f 231 (546)
T COG4615 154 VVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRE--RAEYVHNNLYIPDAQEYRHHIIRANTF 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechH--HHHHHHhhhcCcchHHHHhhhhhhhHH
Confidence 998888888888888888788888888889999999999999999988642 2223333333332222222 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005314 362 GGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSK 441 (703)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~ 441 (703)
......+++++.+....++||+.... +.-+......+.+.+.+...|+.++....|.+.+|++++++|.++-..+..
T Consensus 232 ~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~ 308 (546)
T COG4615 232 HLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYK 308 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcc
Confidence 11223344555555555566655333 333333444445555667789999999999999999999999998664433
Q ss_pred CCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC
Q 005314 442 IDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD 521 (703)
Q Consensus 442 ~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id 521 (703)
.+-..+ ...+. -..||++||.|+|+.. .--+..||++|++||.|-|+|.+||||||+++||.|+|.|++|+|++|
T Consensus 309 a~~~~~--q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ld 383 (546)
T COG4615 309 ADFPRP--QAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (546)
T ss_pred ccCCCC--CcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeEC
Confidence 222111 11222 3589999999999843 245889999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCC---CCC
Q 005314 522 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGER---GIQ 598 (703)
Q Consensus 522 G~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~---G~~ 598 (703)
|+++..-+++++|+-++-|+-|.+||+.++ |.+..++++.+.+ |+++|.-.=.|.+-++ -..
T Consensus 384 g~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~---------~LqrLel~~ktsl~d~~fs~~k 448 (546)
T COG4615 384 GKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEK---------WLQRLELAHKTSLNDGRFSNLK 448 (546)
T ss_pred CccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHH---------HHHHHHHhhhhcccCCcccccc
Confidence 999999999999999999999999999854 5222266665543 3444444444555432 258
Q ss_pred CChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCEEEE
Q 005314 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKNGVIAE 676 (703)
Q Consensus 599 LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive 676 (703)
||-|||.|+|+--|++.+.|||+|||=-+-=||.=.+.+.+.+-..+ .|||+|.|||+-.....|||++.|+||+++|
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 99999999999999999999999999999999999999987775433 4999999999999999999999999999998
Q ss_pred ec
Q 005314 677 KG 678 (703)
Q Consensus 677 ~G 678 (703)
.-
T Consensus 529 ~t 530 (546)
T COG4615 529 LT 530 (546)
T ss_pred cc
Confidence 53
No 59
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.4e-49 Score=402.47 Aligned_cols=220 Identities=37% Similarity=0.627 Sum_probs=207.9
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
|.|+++|++|+|+.. +.++|+|+||+|++|+++||+|+||||||||+++|+|++.|++|+|.+||.++.+++...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999843 3479999999999999999999999999999999999999999999999999999998999999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 537 MGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 537 i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
++|++|++.+|++|++|||.+. . ..+.+++.++++..++.+++..+|.|++|.++....+||||||||++|||||+++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~-~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPF-G-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcC-C-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999876 3 3567889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecC
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gt 679 (703)
|++|||||||++||+.+.+.+.+.|.++.+++|+|++||++..+..||+|++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999999998877899999999999999999999999999999886
No 60
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.4e-49 Score=405.94 Aligned_cols=236 Identities=66% Similarity=1.057 Sum_probs=216.4
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|+++.|+.+.+.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997543357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
|++|++.+|..|++|||.++. ...+.+++.++++..++.+++..+|.|+++.+.....+||||||||++||||++.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGK-PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccC-CCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999973 3445667788888889999999999999999999999999999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHH
Q 005314 619 ILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~ 696 (703)
+|||||||++||+.+.+.+.+.|.++.+++|+|++||++..+..||+|++|++|++++.|+.+++.+. ...++.++.
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 236 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVK 236 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHhh
Confidence 99999999999999999999999887778999999999999999999999999999999999999875 666666553
No 61
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.9e-49 Score=422.20 Aligned_cols=227 Identities=32% Similarity=0.496 Sum_probs=194.1
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH---Hh
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW---LR 534 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~---lR 534 (703)
|+++||+++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997421 347999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 535 QQMGLVSQEPVLFN-DTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~-gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
++||||+|++.+|. .|++|||.++.. ...+. +++.++++..++.++... ...+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999995 799999998621 11222 345667777777665443 44689999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||||+.+|+|||||||||+||+++...+.+.|.++.+ +.|+|+|||+++.++. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998754 7899999999999965 99999999999999999999986
Q ss_pred cCCc-HHHHHHH
Q 005314 686 VKDG-IYASLVA 696 (703)
Q Consensus 686 ~~~g-~Y~~l~~ 696 (703)
.+.. .++.++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 5433 3344443
No 62
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-48 Score=417.20 Aligned_cols=221 Identities=26% Similarity=0.453 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCC--CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC-------
Q 005314 458 DIEFQHITFKYPARP--DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL------- 528 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~--~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~------- 528 (703)
.|+++||+|+|+... +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcceEEEccCC--CCCcccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCC
Q 005314 529 ---------QLKWLRQQMGLVSQEP--VLFNDTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYD-TIVGER 595 (703)
Q Consensus 529 ---------~~~~lR~~i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~ 595 (703)
....+|++|+||+|+| .+|+.|++|||.++.. ...++++..+. +.+++..+ |++ ......
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999999831 12344443221 23455555 564 457788
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCE
Q 005314 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGV 673 (703)
Q Consensus 596 G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~ 673 (703)
+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999998764 589999999999987 5699999999999
Q ss_pred EEEecChhHHhc
Q 005314 674 IAEKGKHETLVH 685 (703)
Q Consensus 674 Ive~Gth~eLl~ 685 (703)
|++.|+|+++.+
T Consensus 254 i~~~g~~~~~~~ 265 (320)
T PRK13631 254 ILKTGTPYEIFT 265 (320)
T ss_pred EEEeCCHHHHhc
Confidence 999999997653
No 63
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.5e-48 Score=394.74 Aligned_cols=220 Identities=41% Similarity=0.704 Sum_probs=204.4
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
+.|+++|++++|+++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 368999999999743 3569999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 537 MGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 537 i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
++|++|++.+|..|++||+.++ ....+++++.++++..++.+.+..+|.|++|.+.....+||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLG-APLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCccccchHHHHhhcC-CCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999987 333456678889999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEec
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~G 678 (703)
|++|||||||++||+++...+.+.|.++.+++|+|++||++..+..||+|++|++|++++.|
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999887678999999999999889999999999999865
No 64
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.7e-44 Score=400.38 Aligned_cols=470 Identities=16% Similarity=0.165 Sum_probs=381.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChh------HHHHHHHhHHHHHHHHH
Q 005314 180 ALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSG------AIGARLSADSASVRSVV 253 (703)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G------~l~~rl~~D~~~v~~~~ 253 (703)
+.+|.+++.+..++...+.|+...+..+.+.-+...+.++-++....++.. ..| ..=+|+..|+..+-+..
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~---~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA---QAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH---hcccccCCCChHHhHHHHHHHHHhhH
Confidence 445666666777778889999999999999999999999999888555542 232 23379999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 005314 254 GDALGLHVQNIATLFAGVIIAFEA---------------NWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEAS 318 (703)
Q Consensus 254 ~~~~~~~~~~~~~~i~~~i~~~~~---------------~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (703)
......+++++++++...++++-. ...+..++++.+++--++..+..|.+.+.+.+..+..++..
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 888888888888888777776622 22233333334444444455778888888888888888888
Q ss_pred HHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 005314 319 QVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEV 398 (703)
Q Consensus 319 ~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~ 398 (703)
..+...-++.+.|..|+-|+.+.++.++......+...+..........+......++.++-+..++.....|++++|.+
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~l 325 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGL 325 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHH
Confidence 89999999999999999999999888888887777666666665555555666666666666677788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC--CCCCCC--ccc---cCCCCcEEEEEEEEEcCCC
Q 005314 399 FRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKID--SSDESG--TTI---ENVKGDIEFQHITFKYPAR 471 (703)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~--~~~~~~--~~~---~~~~~~I~~~~vsF~Y~~~ 471 (703)
+....++......++.+...++.++.-.+...|+.++.+.-.... ...+.. ... ......|+|+|++..-|++
T Consensus 326 mqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~ 405 (604)
T COG4178 326 MQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC
Confidence 999999999999999999999999999999999999875322111 000000 000 1114689999999999864
Q ss_pred CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccH
Q 005314 472 PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTV 551 (703)
Q Consensus 472 ~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTI 551 (703)
...++++||+|+||+.+-|.|+||||||||++.|.|+++-.+|+|..-. -..+-|+||.|++=.||+
T Consensus 406 --~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 406 --QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTL 472 (604)
T ss_pred --CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccH
Confidence 4789999999999999999999999999999999999999999997641 125899999999999999
Q ss_pred HHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCC
Q 005314 552 RVNIAYGKEG-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALD 630 (703)
Q Consensus 552 reNI~~g~~~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD 630 (703)
||-|+|-... +.+|+++.+++.++++.+++++|.+=-+ -..-||+|||||||+||.++++|++++|||||||||
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 9999998543 3899999999999999999999754322 567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q 005314 631 AESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVK 670 (703)
Q Consensus 631 ~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~ 670 (703)
+++|..+.+.+++.+.+.|+|-|+||.......++.+-+.
T Consensus 548 e~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 548 EETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999999999988888876664
No 65
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-48 Score=407.54 Aligned_cols=218 Identities=31% Similarity=0.536 Sum_probs=196.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+.+|++. .+++|+||+|+.||+++|+|||||||||++++|+||.+|++|+|.|||.++.+++++. |+|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999742 2999999999999999999999999999999999999999999999999999999877 799
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC-----CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEG-----NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~-----~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|+|+|+..||.- ||+|||+|+..- +.-++++.++++..++.+.+++.| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999965 999999999421 223567899999999999988865 789999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccCC
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~~ 688 (703)
||+++|+++|||||+|+||++........|.++.+ +.|+|.|||+-..+ ..||||+||.+|+|.+.|+..|+.+++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999888877543 68999999999876 5599999999999999999999998755
Q ss_pred cHH
Q 005314 689 GIY 691 (703)
Q Consensus 689 g~Y 691 (703)
..|
T Consensus 227 n~f 229 (338)
T COG3839 227 NLF 229 (338)
T ss_pred chh
Confidence 443
No 66
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.2e-48 Score=394.02 Aligned_cols=214 Identities=34% Similarity=0.521 Sum_probs=195.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.++++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+++|.|+..|.+|+|.+||+++.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999997 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC-CCCcccHHHHHhcCCCCC---------CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 538 GLVSQEP-VLFNDTVRVNIAYGKEGN---------ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 538 ~~V~Qe~-~LF~gTIreNI~~g~~~~---------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
|||||++ .-|.-|++|=+.+|+.+. .+++.+.+|++..++.++..+ .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999996 567889999999996541 234468899999999888765 2467999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchH-HhhcCEEEEEeCCEEEEecChhHHh
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLST-IRDADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlst-i~~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
.|||||.++|+|||||||||+||....-.|++.++++. +|+|+|+|.|+++. .+.||++++|++|+|+.+|+.+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999876 37999999999986 5779999999999999999999888
Q ss_pred c
Q 005314 685 H 685 (703)
Q Consensus 685 ~ 685 (703)
.
T Consensus 228 T 228 (258)
T COG1120 228 T 228 (258)
T ss_pred C
Confidence 5
No 67
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-48 Score=397.39 Aligned_cols=219 Identities=34% Similarity=0.516 Sum_probs=187.4
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH---HHHhc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL---KWLRQ 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~---~~lR~ 535 (703)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999973 469999999999999999999999999999999999999999999999999987764 67889
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCCC--CCCCHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 536 QMGLVSQEPVLFND-TVRVNIAYGKE--GNATEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 536 ~i~~V~Qe~~LF~g-TIreNI~~g~~--~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
+|+||+|++.+|.. |++||+.++.. ...+.+ ++.++++..++.++ ......+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-----------EDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 99999999999986 99999988621 112332 34444555444333 23344689999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||||+++|+||||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999988753 7899999999998865 99999999999999999999986
Q ss_pred cCCcHHH
Q 005314 686 VKDGIYA 692 (703)
Q Consensus 686 ~~~g~Y~ 692 (703)
. ...|.
T Consensus 227 ~-~~~~~ 232 (235)
T cd03261 227 S-DDPLV 232 (235)
T ss_pred C-CChhh
Confidence 4 55554
No 68
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1e-47 Score=391.93 Aligned_cols=219 Identities=53% Similarity=0.823 Sum_probs=201.4
Q ss_pred CCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHh
Q 005314 455 VKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLR 534 (703)
Q Consensus 455 ~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR 534 (703)
..+.|+++|++++|+++...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999854234799999999999999999999999999999999999999999999999999888888889
Q ss_pred cceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 535 QQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
++++|++|++.+|..|++||+.++. ...+..++.+.++..++++++..+|.|+++.+..+..+||||||||++||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGL-QSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhcccc-CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999873 334555666666777889999999999999999999999999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEE
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVI 674 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~I 674 (703)
++|++|||||||++||+++.+.+.+.|.++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999988778999999999999999999999999975
No 69
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.9e-48 Score=360.10 Aligned_cols=210 Identities=33% Similarity=0.506 Sum_probs=190.1
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|.+++|.|.|..-| =.++++|++||+|||+||||||||||++|++||..|.+|+|.|+|+|.....+. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999997543 368999999999999999999999999999999999999999999999887765 47899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKEGN-----ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~~~-----~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
.++||.-||.- ||++||.+|..|. ...+++..|+..+|+.+|..+|| .+||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 99999999965 9999999997552 34577999999999999999998 5799999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|+|+-|||+||||+||||+.-......-+..+. ++.|+++|||.++-++ .+|+++++++|||+++|.-+++.+.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999888888887654 4789999999999875 5999999999999999999999875
No 70
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-47 Score=394.34 Aligned_cols=219 Identities=30% Similarity=0.464 Sum_probs=193.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC---CCCCeEEECCeeCCCCCHHHHh
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD---PDTGHITLDGVEIQKLQLKWLR 534 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~---p~~G~I~idG~di~~~~~~~lR 534 (703)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999973 469999999999999999999999999999999999985 6999999999999988888899
Q ss_pred cceEEEccCCCCCcccHHHHHhcCCCC-------CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 535 QQMGLVSQEPVLFNDTVRVNIAYGKEG-------NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~gTIreNI~~g~~~-------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
++|+|++|++.+|..|++|||.++... +..++++.++++..++++++.. .....+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 999999999999999999999886210 1122346667777777655543 34557789999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
+||||++++|++|||||||++||+++...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|+|++.|++++++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999875 6999999999999999999999864
No 71
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.3e-48 Score=392.82 Aligned_cols=213 Identities=36% Similarity=0.560 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC-----CCCCCeEEECCeeCCCCC--HH
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFY-----DPDTGHITLDGVEIQKLQ--LK 531 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y-----~p~~G~I~idG~di~~~~--~~ 531 (703)
|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|+++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999974 36999999999999999999999999999999999999 999999999999998877 66
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCCC-CC-----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 532 WLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-NA-----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~~-----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
.+|++++||+|++.+|..|++||+.++... .. .++++.++++..++.+++...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999988999999886211 11 13456666666666554443221 5789999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
|++|||||+++|++|||||||++||+++.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999998865689999999999876 5999999999999999988764
No 72
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-47 Score=379.78 Aligned_cols=208 Identities=33% Similarity=0.523 Sum_probs=175.4
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH---HHH-
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL---KWL- 533 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~---~~l- 533 (703)
|+++||+..|.... ...+|+++||+|++||++||+||||||||||+++|.++-.|++|.|.++|+|+..++. ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999997432 2579999999999999999999999999999999999999999999999999999984 333
Q ss_pred hcceEEEccCCCCCcc-cHHHHHhc----CCCCC-CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 534 RQQMGLVSQEPVLFND-TVRVNIAY----GKEGN-ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~g-TIreNI~~----g~~~~-~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
|++||||+|+..|+.. |++|||.+ ..... ..++.+.+.++..|+.+... .....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 5789999999999866 99999984 31111 11334455555555543322 134679999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCEEEE
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKNGVIAE 676 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive 676 (703)
||||||+.+|+|+|.||||+|||.++.+.|++.+.++. .|+|+|+|||+......|||++.|+||++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999874 3789999999999999999999999999554
No 73
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=381.47 Aligned_cols=199 Identities=35% Similarity=0.520 Sum_probs=175.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.+++++|+..|+. ..||+|+||+|++||+|+||||||||||||+++|.||.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999974 5799999999999999999999999999999999999999999999999988543 4689
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCC-C----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEGN-A----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~~-~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||+|++.||.- |++||+.+|.... . .++.+.++++.+|+.+|-+..| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 999999999997 9999999994211 1 2345778888888887766654 799999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-HhhcCEEEEEeC--CEEE
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLST-IRDADLIAVVKN--GVIA 675 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlst-i~~aD~I~vl~~--G~Iv 675 (703)
||+.+|+|||||||++|||+.|....++-+.++++ ++|+++|||++.. +.-+|||+||.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999999999988654 6999999999986 567999999999 5553
No 74
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=387.36 Aligned_cols=216 Identities=37% Similarity=0.617 Sum_probs=195.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC-CCCHHHHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ-KLQLKWLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~-~~~~~~lR~~ 536 (703)
.|+++|++|+|+++ .++|+|+||+|++|+.++|+|+||||||||+++|.|++.|++|+|.+||.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 58999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred eEEEccCC--CCCcccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 537 MGLVSQEP--VLFNDTVRVNIAYGKE-GNATEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 537 i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
+|+|+|+| ++|..||.|.|+||.. -..+++ ++.+|++.++++++.++. -.+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHh
Confidence 99999999 8999999999999942 123443 467788888887775543 47899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|.+|..+|++||||||||+||+.+.+.+.+.+.++.+ ++|+|+|||++..+.. ||+++||++|+++.+|+..++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999865 4799999999999977 999999999999999999888764
No 75
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-48 Score=406.78 Aligned_cols=220 Identities=35% Similarity=0.553 Sum_probs=197.0
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
..|+++||+.+|. +..+++|+||+|++||+++|+|||||||||++++|+||..|++|+|.+||+|+.++.+. +|+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999997 46899999999999999999999999999999999999999999999999999998765 589
Q ss_pred eEEEccCCCCC-cccHHHHHhcCCC--CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 537 MGLVSQEPVLF-NDTVRVNIAYGKE--GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 537 i~~V~Qe~~LF-~gTIreNI~~g~~--~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
||+|+|+..|| +.||+|||+||.. .... ++++.++++++++.+|-.+.| .+|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence 99999999999 5699999999954 1122 247899999999988877654 7899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchH-HhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLST-IRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlst-i~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
||||..+|++||||||.||||.+-....+..++++. .|.|.|+|||+-.. +..+|||+||++|+|...||.+|+..+
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999987754 38999999999875 678999999999999999999999987
Q ss_pred CCcHHH
Q 005314 687 KDGIYA 692 (703)
Q Consensus 687 ~~g~Y~ 692 (703)
|...|-
T Consensus 228 P~~~fV 233 (352)
T COG3842 228 PATRFV 233 (352)
T ss_pred cchHHH
Confidence 654443
No 76
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-47 Score=399.83 Aligned_cols=218 Identities=32% Similarity=0.510 Sum_probs=192.1
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742124699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--CCCcccHHHHHhcCCCC-CCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 538 GLVSQEP--VLFNDTVRVNIAYGKEG-NATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 538 ~~V~Qe~--~LF~gTIreNI~~g~~~-~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
+||+|+| .++..|++|||.++... ..+. +++.++++..++.++.... ..+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 36778999999987311 1232 4567777777776665544 368999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|||+.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7999999999999988999999999999999999988754
No 77
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-47 Score=373.46 Aligned_cols=226 Identities=33% Similarity=0.508 Sum_probs=193.8
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH---HH
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK---WL 533 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~---~l 533 (703)
.-|++++|+|+|. ++.|++|+||+|++||.++|+|+||||||||+++|.|+..|++|+|.++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 3599999999997 45799999999999999999999999999999999999999999999999999999864 57
Q ss_pred hcceEEEccCCCCCcc-cHHHHHhcCCC--CCCCHHHHHHH----HHHhcHHHHHHHhhccccchhc-CCCCCCChhHHH
Q 005314 534 RQQMGLVSQEPVLFND-TVRVNIAYGKE--GNATEAEVLAA----AELANAHQFISSLKQGYDTIVG-ERGIQLSGGQKQ 605 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~g-TIreNI~~g~~--~~~t~~ei~~A----~~~a~l~~~I~~Lp~G~dT~vG-e~G~~LSGGQkQ 605 (703)
|+++|+++|...||+. ||+||+.|--. .+.+++++++. ++++|+ ...+. -....||||.+.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL-----------~~~~~~~~PsELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGL-----------RGAAADLYPSELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCC-----------ChhhhhhCchhhcchHHH
Confidence 9999999999999987 99999998421 13455555443 333443 33322 245799999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhH
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~e 682 (703)
|+||||||.-||+|+++|||||+|||.+...+-+-|.++.+ +-|+|+|||+++++.. ||+|+++.||+|+..||.+|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999888877643 8999999999998865 89999999999999999999
Q ss_pred HhccCCcHHHHHHH
Q 005314 683 LVHVKDGIYASLVA 696 (703)
Q Consensus 683 Ll~~~~g~Y~~l~~ 696 (703)
|.+.++..-++++.
T Consensus 233 l~~sd~P~v~qf~~ 246 (263)
T COG1127 233 LLASDDPWVRQFFN 246 (263)
T ss_pred HHhCCCHHHHHHhc
Confidence 99875555555554
No 78
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-47 Score=393.36 Aligned_cols=227 Identities=28% Similarity=0.427 Sum_probs=193.0
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCC--CC
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQK--LQ 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~--~~ 529 (703)
..|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999973 4699999999999999999999999999999999999997 48999999999853 34
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCCC-C-----CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-N-----ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~-----~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
...+|++|+||+|++.+|+.|++|||.++... . ..++++.++++..++.+.+ ++.+++ ...+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHH
Confidence 56789999999999999999999999986211 1 1134566666666664333 344454 567899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhH
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~e 682 (703)
|||++|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999975 599999999999999999999
Q ss_pred HhccCCcHHHH
Q 005314 683 LVHVKDGIYAS 693 (703)
Q Consensus 683 Ll~~~~g~Y~~ 693 (703)
+.+.+...|.+
T Consensus 236 ~~~~~~~~~~~ 246 (254)
T PRK14273 236 LFFNPKNTKTE 246 (254)
T ss_pred HHhCCCChHHH
Confidence 98654444443
No 79
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-47 Score=372.69 Aligned_cols=227 Identities=32% Similarity=0.456 Sum_probs=190.1
Q ss_pred cEEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC-HHHHhc
Q 005314 458 DIEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ-LKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~-~~~lR~ 535 (703)
.++++|+++.|+.+. -.++++||||+|.+||+++|||+||||||||.++|+|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999998541 125999999999999999999999999999999999999999999999998775543 447889
Q ss_pred ceEEEccCCCC-Cc--ccHHHHHhcCC---CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 536 QMGLVSQEPVL-FN--DTVRVNIAYGK---EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 536 ~i~~V~Qe~~L-F~--gTIreNI~~g~---~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
.|-+|+|||.- +| -||++-|.=.- .-+-.+.++.++++.+|+.+-. .-.+..+|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHHHHHHH
Confidence 99999999973 33 26666553221 1123356688999888875422 224568899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCc--eEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGR--TTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~r--T~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
||||.-+|++|||||||||||.-..+.|++.|.++.+++ |.|+|||+++.+.+ ||||+||++|+|||.++-+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999999887765 99999999999966 999999999999999999999876
Q ss_pred CCcHHHHH
Q 005314 687 KDGIYASL 694 (703)
Q Consensus 687 ~~g~Y~~l 694 (703)
+.-.|.+.
T Consensus 233 ~~h~ytr~ 240 (252)
T COG1124 233 PSHPYTRE 240 (252)
T ss_pred CccHHHHH
Confidence 55567664
No 80
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-47 Score=408.66 Aligned_cols=220 Identities=27% Similarity=0.457 Sum_probs=192.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.++.+. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999952 35799999999999999999999999999999999999999999999999999887764 4799
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFN-DTVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~-gTIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 699999999832 1122 245677788888877766655 589999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccCC
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~~ 688 (703)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|+.+++.+++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999988754 78999999999976 5699999999999999999999987655
Q ss_pred cHHH
Q 005314 689 GIYA 692 (703)
Q Consensus 689 g~Y~ 692 (703)
..|.
T Consensus 228 ~~~~ 231 (356)
T PRK11650 228 STFV 231 (356)
T ss_pred cHHH
Confidence 4443
No 81
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=8.6e-47 Score=390.29 Aligned_cols=223 Identities=30% Similarity=0.463 Sum_probs=190.6
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC-----CCeEEECCeeCCCC--CHH
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD-----TGHITLDGVEIQKL--QLK 531 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~-----~G~I~idG~di~~~--~~~ 531 (703)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 36999999999999999999999999999999999999998 99999999999763 466
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCCC-C-CC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 532 WLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-N-AT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~-~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
.+|++|+||||++.+|..|++||+.++... . .+ ++++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 788999999999999999999999875211 1 11 234566666666653331 2344566799999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHh
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
|++|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||++..+. .||+|++|++|+|++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877789999999999875 59999999999999999999997
Q ss_pred ccCCcHH
Q 005314 685 HVKDGIY 691 (703)
Q Consensus 685 ~~~~g~Y 691 (703)
+.+...+
T Consensus 232 ~~~~~~~ 238 (247)
T TIGR00972 232 TNPKEKR 238 (247)
T ss_pred hCCCChH
Confidence 6434443
No 82
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-47 Score=407.30 Aligned_cols=226 Identities=34% Similarity=0.528 Sum_probs=189.4
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH---Hh
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW---LR 534 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~---lR 534 (703)
|+++||+|+|+.+. +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997321 357999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 535 QQMGLVSQEPVLFN-DTVRVNIAYGKE-GNATEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~-gTIreNI~~g~~-~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
++|+||+|++.+|. .|++|||.++.. ...+.+ ++.++++..++ +........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGL-----------SDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHH
Confidence 89999999999986 699999988621 112332 33344444443 33344456789999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||||+.+|+|||||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999865 99999999999999999999986
Q ss_pred cCCcHHH-HHH
Q 005314 686 VKDGIYA-SLV 695 (703)
Q Consensus 686 ~~~g~Y~-~l~ 695 (703)
.+...|. .++
T Consensus 231 ~~~~~~~~~~~ 241 (343)
T PRK11153 231 HPKHPLTREFI 241 (343)
T ss_pred CCCcHHHHHHH
Confidence 5333343 344
No 83
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-47 Score=407.73 Aligned_cols=219 Identities=30% Similarity=0.478 Sum_probs=191.3
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .+++
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ 79 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRD 79 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 36999999999963 469999999999999999999999999999999999999999999999999987764 4689
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 537 MGLVSQEPVLFN-DTVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 537 i~~V~Qe~~LF~-gTIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
||||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++..+. ..+||||||||+|||
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLA 148 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALA 148 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence 999999999996 599999999732 1122 34567777777776655443 468999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccC
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVK 687 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~ 687 (703)
|||+++|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|+||++|+|++.|+.+++.+++
T Consensus 149 RaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 149 RALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999988754 79999999999987 569999999999999999999998765
Q ss_pred CcHH
Q 005314 688 DGIY 691 (703)
Q Consensus 688 ~g~Y 691 (703)
...|
T Consensus 229 ~~~~ 232 (351)
T PRK11432 229 ASRF 232 (351)
T ss_pred CchH
Confidence 5444
No 84
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=8.7e-47 Score=387.54 Aligned_cols=221 Identities=25% Similarity=0.481 Sum_probs=188.0
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH-hcce
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL-RQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l-R~~i 537 (703)
|+++||+|+|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 578999999973 469999999999999999999999999999999999999999999999999988876554 6789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCCHHHH-------HHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEGNATEAEV-------LAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei-------~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
+||+|++.+|.+ |++|||.++... .....+ ........++++++.+ |++........+||||||||++|
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQA-RTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhh-ccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHH
Confidence 999999999987 999999887321 100000 0011112345556665 66666677788999999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||++.+|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|++.|++++++.
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 999999999999999999999999999999998865 68999999999999865 99999999999999999999875
No 85
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=390.63 Aligned_cols=219 Identities=31% Similarity=0.479 Sum_probs=190.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~--~~~ 530 (703)
.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5899999999973 469999999999999999999999999999999999975 689999999999865 456
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC-CC-----CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-GN-----ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~~-----~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|++|+||+|++.+|..|++|||.++.. .. ..++++.++++..++++++. +.......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 678999999999999999999999987621 01 12345667777777655443 234566789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++||||++.+|+||||||||++||+.+...+.+.|.++.+++|+|++||++..+. .||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999985 5999999999999999999999
Q ss_pred hcc
Q 005314 684 VHV 686 (703)
Q Consensus 684 l~~ 686 (703)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 864
No 86
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-46 Score=385.27 Aligned_cols=225 Identities=32% Similarity=0.550 Sum_probs=192.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+|+|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999973 4699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCCCCcccHHHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 538 GLVSQEPVLFNDTVRVNIAYGKEG-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 538 ~~V~Qe~~LF~gTIreNI~~g~~~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
+|++|++.+|..|++||+.++... ...++++.+.++..++.+ ........+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999986211 112334444444444321 123346778999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhccCCcHHHH
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHVKDGIYAS 693 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~ 693 (703)
|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|++++.|+.+++...+...|.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 999999999999999999999999988753 7999999999999864 9999999999999999999998643445655
Q ss_pred HH
Q 005314 694 LV 695 (703)
Q Consensus 694 l~ 695 (703)
.+
T Consensus 230 ~~ 231 (241)
T PRK14250 230 LF 231 (241)
T ss_pred HH
Confidence 44
No 87
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.6e-47 Score=408.46 Aligned_cols=210 Identities=34% Similarity=0.497 Sum_probs=183.4
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH----hcceEEEccCCCCCc
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL----RQQMGLVSQEPVLFN 548 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l----R~~i~~V~Qe~~LF~ 548 (703)
++.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||+++..++..++ |++|+||+|++.||.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 3468999999999999999999999999999999999999999999999999999999888 889999999999997
Q ss_pred -ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEe
Q 005314 549 -DTVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLL 622 (703)
Q Consensus 549 -gTIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlL 622 (703)
.|++|||.|+.. ...+ .+++.++++.+++.+++.+ ...+||||||||++|||||+.+|+||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-----------~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-----------YPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 599999998721 0112 3456677777776655544 4558999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccCCcHHHH
Q 005314 623 DEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKDGIYAS 693 (703)
Q Consensus 623 DEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~ 693 (703)
|||||+||+.+.+.+++.+.++. .++|+|+|||++..+ +.||+|++|++|+|++.|+.+++++.+...|..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 227 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHH
Confidence 99999999999999999998764 379999999999975 669999999999999999999998764444443
No 88
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-46 Score=394.19 Aligned_cols=214 Identities=32% Similarity=0.546 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+|+|+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.+..++|++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999973 24699999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEccCC--CCCcccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 538 GLVSQEP--VLFNDTVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 538 ~~V~Qe~--~LF~gTIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
+||+|+| .+|..|++|||.|+.. ...+ ++++.++++..+++++..+.| .+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6889999999998721 1122 245677777777776665554 48999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHh
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
|||+.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|++++.|+.+++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999998875 479999999999998 569999999999999999987653
No 89
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.4e-46 Score=375.56 Aligned_cols=202 Identities=34% Similarity=0.634 Sum_probs=184.1
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
+.|+++|++++|+.. +.++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 579999999999743 2469999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 537 MGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 537 i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
|+||+|+|.+|++|++|||.+. . ..+++++.++++ +..+..+|||||+||++||||++.+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~-~-~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPF-D-EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred EEEEecCCcccCccHHHHhccc-C-CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999876 3 245555555443 3467889999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecC
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gt 679 (703)
|++|||||||++||+++.+.+.+.|.++.+++|+|+|||++..+..||++++|++|++++.|+
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999999999998877899999999999998899999999999999886
No 90
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-46 Score=388.46 Aligned_cols=226 Identities=30% Similarity=0.468 Sum_probs=193.6
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCC--C
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQK--L 528 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~--~ 528 (703)
.+.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.+||+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 467999999999973 469999999999999999999999999999999999996 589999999999853 4
Q ss_pred CHHHHhcceEEEccCCCCCcccHHHHHhcCCC--CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 529 QLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKE--GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 529 ~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~--~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
+...+|++|+||+|++.+|..|++||+.++.. ...+. +++.++++..++.+++ .+.......+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 56788999999999999999999999988621 11222 3456666666654433 23456677899999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChh
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~ 681 (703)
||||++||||++++|+||||||||++||+.+.+.+.+.|.++.+++|+|+|||++..+. .||+|++|++|++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877889999999999885 59999999999999999999
Q ss_pred HHhccCCcHH
Q 005314 682 TLVHVKDGIY 691 (703)
Q Consensus 682 eLl~~~~g~Y 691 (703)
++.+.+...|
T Consensus 241 ~~~~~~~~~~ 250 (260)
T PRK10744 241 TIFTKPAKKQ 250 (260)
T ss_pred HHHhCCCcHH
Confidence 9976433333
No 91
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.1e-46 Score=380.58 Aligned_cols=212 Identities=29% Similarity=0.449 Sum_probs=180.9
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||++.|++. .+++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5799999999742 25799999999999999999999999999999999999999999999999998764 367788999
Q ss_pred EEccCCCCC-cccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLF-NDTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF-~gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
||+|++.+| ..|++||+.++.. ...+. +++.++++..++.+. ......+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-----------ANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhChhhhCCHHHHHHHHHHHH
Confidence 999999998 5799999987521 11122 234444444444332 233346899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
++++|++|||||||++||+.+.+.+.+.|.++.+++|+|++||++..+. .||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998877899999999999986 4999999999999999999875
No 92
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1e-46 Score=381.84 Aligned_cols=204 Identities=34% Similarity=0.535 Sum_probs=176.7
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH---HHhc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK---WLRQ 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~---~lR~ 535 (703)
|+++||+|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999743 24699999999999999999999999999999999999999999999999999876543 4788
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCC-----CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 536 QMGLVSQEPVLFN-DTVRVNIAYGKE-----GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 536 ~i~~V~Qe~~LF~-gTIreNI~~g~~-----~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
+++||+|++.+|. .|++||+.++.. .+..++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999987 599999987521 1112356677777777766554443 5899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEE
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVI 674 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~I 674 (703)
||||+.+|++|||||||++||+++.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998864 47899999999999864 999999999975
No 93
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=386.30 Aligned_cols=213 Identities=38% Similarity=0.584 Sum_probs=183.4
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC---HHHHhc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ---LKWLRQ 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~---~~~lR~ 535 (703)
|+++||+++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||+++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 578999999974 146999999999999999999999999999999999999999999999999998876 567889
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 536 QMGLVSQEPVLFN-DTVRVNIAYGKEG-------------NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 536 ~i~~V~Qe~~LF~-gTIreNI~~g~~~-------------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
.++||+|++.+|. .|++||+.++... +..++++.++++..+ +.........+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVG-----------LLDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcC-----------ChhhhCCCcccCCH
Confidence 9999999999887 6999999875210 011223334444433 34444567789999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCEEEEec
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKG 678 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~G 678 (703)
|||||++|||||+++|+|||||||||+||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999998875 3799999999999987 69999999999999999
Q ss_pred ChhHHh
Q 005314 679 KHETLV 684 (703)
Q Consensus 679 th~eLl 684 (703)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 999874
No 94
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-46 Score=393.13 Aligned_cols=217 Identities=35% Similarity=0.556 Sum_probs=192.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+|+|+.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999743 34699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCC--CCCcccHHHHHhcCCCC-CCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 538 GLVSQEP--VLFNDTVRVNIAYGKEG-NATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 538 ~~V~Qe~--~LF~gTIreNI~~g~~~-~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
+||+|++ .+++.|++|||.++... ..+. +++.++++..++++++...| .+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 56788999999986211 1232 34677777777777766654 48999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|||+.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 7899999999999999999999999999999999988753
No 95
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-46 Score=390.00 Aligned_cols=224 Identities=31% Similarity=0.474 Sum_probs=192.6
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCC--C
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQK--L 528 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~--~ 528 (703)
.+.|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+||+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 357999999999973 4699999999999999999999999999999999999985 89999999999865 3
Q ss_pred CHHHHhcceEEEccCCCCCcccHHHHHhcCCC------CCC-CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 529 QLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKE------GNA-TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 529 ~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~------~~~-t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
+...+|+.|+||+|++.+|..|++|||.++.. ... .++++.++++..++.+++. +.......+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 56678999999999999999999999987621 011 1244566777777654432 234566789999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecCh
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth 680 (703)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999998877889999999999985 5999999999999999999
Q ss_pred hHHhccCCc
Q 005314 681 ETLVHVKDG 689 (703)
Q Consensus 681 ~eLl~~~~g 689 (703)
++++..+..
T Consensus 247 ~~~~~~~~~ 255 (267)
T PRK14235 247 EKMFTNPDD 255 (267)
T ss_pred HHHHhCCCC
Confidence 999754333
No 96
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-46 Score=384.76 Aligned_cols=212 Identities=35% Similarity=0.516 Sum_probs=181.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999974 469999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCC-CC----CH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 539 LVSQEPVLFN-DTVRVNIAYGKEG-NA----TE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 539 ~V~Qe~~LF~-gTIreNI~~g~~~-~~----t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
||+|+|.+|. .|++|||.++... .. +. +++.++++..++.+ .......+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-----------LADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHH
Confidence 9999999986 6999999986211 01 11 23344444444433 334455789999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||||+++|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 789999999999875 599999999999999999999976
Q ss_pred c
Q 005314 686 V 686 (703)
Q Consensus 686 ~ 686 (703)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
No 97
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.1e-46 Score=379.86 Aligned_cols=217 Identities=28% Similarity=0.434 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH-hcce
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL-RQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l-R~~i 537 (703)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 579999999973 469999999999999999999999999999999999999999999999999988877654 6789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
+||+|++.+|.+ |++||+.++.. .....+..+ .+.++++.++ +++........+||||||||++||||++++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~-----~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAY-ARRRAKRKA-----RLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhh-hcCchhHHH-----HHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 999999999986 99999998732 111111111 1122233321 233344456678999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|++|||||||++||+++...+.+.|.++. +++|+|++||++..+.. ||+|++|++|++++.|+.+++..
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999998875 57899999999998755 99999999999999999988763
No 98
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-46 Score=392.70 Aligned_cols=221 Identities=33% Similarity=0.476 Sum_probs=186.8
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH----hc
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL----RQ 535 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l----R~ 535 (703)
.++||+++|. +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++..++ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4557777775 3468999999999999999999999999999999999999999999999999988776543 46
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCC-----CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 536 QMGLVSQEPVLFN-DTVRVNIAYGKE-----GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 536 ~i~~V~Qe~~LF~-gTIreNI~~g~~-----~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
+++||+|++.+|. .|++|||.++.. ....++++.++++..++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999985 699999987521 1112345666777777766655544 4899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
||||+++|+||||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998874 3799999999999875 5999999999999999999999865
Q ss_pred CCcHHHHH
Q 005314 687 KDGIYASL 694 (703)
Q Consensus 687 ~~g~Y~~l 694 (703)
+...|.+.
T Consensus 252 ~~~~~~~~ 259 (269)
T cd03294 252 PANDYVRE 259 (269)
T ss_pred cCcHHHHH
Confidence 55566553
No 99
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-46 Score=394.26 Aligned_cols=218 Identities=33% Similarity=0.555 Sum_probs=186.5
Q ss_pred EEEEEEEEEcCCCC--CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC--HHHHh
Q 005314 459 IEFQHITFKYPARP--DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ--LKWLR 534 (703)
Q Consensus 459 I~~~~vsF~Y~~~~--~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~--~~~lR 534 (703)
|+++||+|+|+... .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEccCC--CCCcccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 535 QQMGLVSQEP--VLFNDTVRVNIAYGKE-GNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 535 ~~i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
++||||+|+| .+|+.|++|||.++.. ...+.++ +.++++..++. +.+.......+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 6889999999998721 1234433 34444444442 11345566789999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHh
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
+|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..+ +.||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988753 78999999999987 469999999999999999999986
Q ss_pred c
Q 005314 685 H 685 (703)
Q Consensus 685 ~ 685 (703)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
No 100
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.5e-46 Score=403.93 Aligned_cols=218 Identities=31% Similarity=0.478 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||+++.+..+. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999973 4689999999999999999999999999999999999999999999999999887653 6889
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCCC-CCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFN-DTVRVNIAYGKEG-NATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~-gTIreNI~~g~~~-~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||+|++.||. .|++|||.|+... ..+. +++.++++..++.++ ......+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGS-----------ERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCch-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999999995 6999999998321 1222 344555555554443 44556799999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccCC
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~~ 688 (703)
||+++|++||||||||+||+.+.+.+.+.|.++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+.+++.+++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 78999999999986 5699999999999999999999997654
Q ss_pred cHH
Q 005314 689 GIY 691 (703)
Q Consensus 689 g~Y 691 (703)
..|
T Consensus 228 ~~~ 230 (353)
T TIGR03265 228 TPF 230 (353)
T ss_pred CHH
Confidence 444
No 101
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=387.97 Aligned_cols=227 Identities=28% Similarity=0.390 Sum_probs=191.1
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCC--CCCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQ--KLQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~--~~~~ 530 (703)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999974 4699999999999999999999999999999999999987 4999999999997 4566
Q ss_pred HHHhcceEEEccCCCCCcc-cHHHHHhcCCC-CC--CC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 531 KWLRQQMGLVSQEPVLFND-TVRVNIAYGKE-GN--AT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~g-TIreNI~~g~~-~~--~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
..+|++++||+|++.+|.. |++||+.++.. .. .+ ++++.++++..++.+++. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6789999999999999976 99999987521 01 01 234555666655543332 2345567899999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChh
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~ 681 (703)
||||++|||||+++|++|||||||++||+.+.+.+.+.|.++.+++|+|+|||++..+. .||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877899999999999976 49999999999999999999
Q ss_pred HHhccCCcHHHHH
Q 005314 682 TLVHVKDGIYASL 694 (703)
Q Consensus 682 eLl~~~~g~Y~~l 694 (703)
++++.+...|.+.
T Consensus 234 ~~~~~~~~~~~~~ 246 (253)
T PRK14267 234 KVFENPEHELTEK 246 (253)
T ss_pred HHHhCCCcHHHHH
Confidence 9986433334443
No 102
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-46 Score=382.78 Aligned_cols=216 Identities=35% Similarity=0.551 Sum_probs=183.9
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH---HHh
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK---WLR 534 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~---~lR 534 (703)
|+++||+++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 12799999999999999999999999999999999999999999999999999877654 358
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 535 QQMGLVSQEPVLFN-DTVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~-gTIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
++|+||+|++.+|. .|++|||.++.. ...+ .+++.++++..++.+ .......+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-----------KADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhcChhhCCHHHHHHHH
Confidence 89999999999997 699999987521 1112 223444444444443 334455789999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
||||++++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 7899999999999865 99999999999999999999875
No 103
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-46 Score=391.00 Aligned_cols=218 Identities=31% Similarity=0.489 Sum_probs=191.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+|+|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999853334699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--CCCcccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 538 GLVSQEP--VLFNDTVRVNIAYGKE-GNATEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 538 ~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
+||+|+| .++..|+.|||.++.. ...+.+ ++.++++..++.++... ...+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4778999999987621 123333 34566666666555433 4578999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|||+++|+||||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..+..||+|++|++|++++.|++++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998754 7999999999999989999999999999999999998764
No 104
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-46 Score=366.54 Aligned_cols=214 Identities=38% Similarity=0.572 Sum_probs=190.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC---HHHHh
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ---LKWLR 534 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~---~~~lR 534 (703)
.|+++||+..||+ ++++|+||||+|++||.|||+|+||||||||++.|.|+.||++|+|.++|.++..+. ++.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999995 468999999999999999999999999999999999999999999999999998888 77889
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCCCC----------CCH---HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 535 QQMGLVSQEPVLFND-TVRVNIAYGKEGN----------ATE---AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~g-TIreNI~~g~~~~----------~t~---~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
++||+++|.+-|... |+.+|+..|+-.. .++ ....+|++..|+.++.- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 999999999999765 9999998884321 223 34566777777666543 4778999
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCEEEEe
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEK 677 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~ 677 (703)
|||.||+||||||+.+|+|+|-|||+|+||+.+.+.|++.|++.. .|.|+|+.-|.+.+.++ ||||+-|++|+|+-.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998754 58999999999999865 999999999999999
Q ss_pred cChhHHh
Q 005314 678 GKHETLV 684 (703)
Q Consensus 678 Gth~eLl 684 (703)
|+.+||-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9998864
No 105
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-46 Score=392.00 Aligned_cols=221 Identities=31% Similarity=0.562 Sum_probs=189.3
Q ss_pred EEEEEEEEEcCCCC--CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC----CHHH
Q 005314 459 IEFQHITFKYPARP--DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL----QLKW 532 (703)
Q Consensus 459 I~~~~vsF~Y~~~~--~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~----~~~~ 532 (703)
|+++||+|+|+.++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 24699999999999999999999999999999999999999999999999999654 3467
Q ss_pred HhcceEEEccCC--CCCcccHHHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCChhHHHHHH
Q 005314 533 LRQQMGLVSQEP--VLFNDTVRVNIAYGKEG-NATEAEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 533 lR~~i~~V~Qe~--~LF~gTIreNI~~g~~~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQkQRia 608 (703)
+|++||||+|+| .+|..|++|||.++... ..+.+++.+. +++++..+ |+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 68999999999987211 2344443332 23445554 7764 345678899999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||||+.+|+||||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4799999999999874 699999999999999999999876
Q ss_pred c
Q 005314 686 V 686 (703)
Q Consensus 686 ~ 686 (703)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 3
No 106
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-46 Score=393.28 Aligned_cols=217 Identities=28% Similarity=0.522 Sum_probs=184.5
Q ss_pred EEEEEEEEEcCCCC--CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC----CCHHH
Q 005314 459 IEFQHITFKYPARP--DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK----LQLKW 532 (703)
Q Consensus 459 I~~~~vsF~Y~~~~--~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~----~~~~~ 532 (703)
|+++||+|+|+... .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997431 1369999999999999999999999999999999999999999999999999863 34677
Q ss_pred HhcceEEEccCC--CCCcccHHHHHhcCCCC-CCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 533 LRQQMGLVSQEP--VLFNDTVRVNIAYGKEG-NATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 533 lR~~i~~V~Qe~--~LF~gTIreNI~~g~~~-~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
+|++||||+|+| .+|..|+.|||.|+... ..+.++ +.++++..++. +........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----------~~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA----------DEFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhhccCCcccCCHHHHH
Confidence 899999999998 79999999999987311 123333 34444444431 11234556799999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHH
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eL 683 (703)
|++|||||+.+|+||||||||++||+.+.+.+.+.|.++. +++|+|+|||++..+ +.||+|++|++|+|++.|+.+++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998865 489999999999988 46999999999999999999998
Q ss_pred hc
Q 005314 684 VH 685 (703)
Q Consensus 684 l~ 685 (703)
..
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 75
No 107
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.3e-46 Score=384.14 Aligned_cols=213 Identities=34% Similarity=0.543 Sum_probs=182.0
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH---HHHhc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL---KWLRQ 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~---~~lR~ 535 (703)
|+++||+++|+. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999972 3469999999999999999999999999999999999999999999999999987654 45788
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 536 QMGLVSQEPVLFN-DTVRVNIAYGKEG-------------NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 536 ~i~~V~Qe~~LF~-gTIreNI~~g~~~-------------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
+++||+|++.+|. .|++||+.++... ...++++.++++..+ ++........+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVG-----------LADKAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCH
Confidence 9999999999886 5999999876211 011223344444443 44444556789999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEec
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKG 678 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~G 678 (703)
|||||++|||||+.+|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||++..+. .||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999988743 789999999999985 59999999999999999
Q ss_pred ChhHHh
Q 005314 679 KHETLV 684 (703)
Q Consensus 679 th~eLl 684 (703)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999974
No 108
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.1e-46 Score=373.39 Aligned_cols=200 Identities=34% Similarity=0.542 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCCC--cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 459 IEFQHITFKYPARPD--VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~--~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
|+++||+++|+++.+ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975311 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 537 MGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 537 i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
|+||+|+|.+|+.|++|||.++ . ..+++++.++++.+++.+++..+|.|++|.+..+..+||||||||++||||++.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFG-K-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccC-C-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999997 3 2456678888889999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHH-HHHHc-CCceEEEEccCchHHhhcCEEEEEeCCE
Q 005314 617 PKILLLDEATSALDAESERVIQDA-LERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGV 673 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~-l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~ 673 (703)
|+++||||||++||+++.+.+.+. +.+.. +++|+|++||+++.+..||+|++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999999888774 55543 4689999999999998899999999985
No 109
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.7e-45 Score=384.27 Aligned_cols=220 Identities=25% Similarity=0.455 Sum_probs=198.3
Q ss_pred CCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHh
Q 005314 455 VKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLR 534 (703)
Q Consensus 455 ~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR 534 (703)
....|+++||++. +.++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~-----~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 36 DDNNLFFSNLCLV-----GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCeEEEEEEEEe-----cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 3457999999995 23699999999999999999999999999999999999999999999998
Q ss_pred cceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 535 QQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
.|+|++|++.+|++|++||+.++ .. ..+.++.++++..++.+++..+|.+++|.+++.+.+||||||||++|||||+
T Consensus 99 -~i~yv~q~~~l~~~tv~enl~~~-~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 99 -RISFSSQFSWIMPGTIKENIIFG-VS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred -EEEEEeCcccccccCHHHHhhcc-cc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 49999999999999999999987 32 3345667778888999999999999999999999999999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHH-HHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHH
Q 005314 615 KAPKILLLDEATSALDAESERVIQDAL-ERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYAS 693 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l-~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~ 693 (703)
++|+||||||||++||+++...+.+.+ ..+.+++|+|+|||++..+..||+|++|++|++++.|+++++.+. ...|..
T Consensus 176 ~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~ 254 (282)
T cd03291 176 KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSS 254 (282)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHH
Confidence 999999999999999999999998754 556668999999999999999999999999999999999999864 556665
Q ss_pred HH
Q 005314 694 LV 695 (703)
Q Consensus 694 l~ 695 (703)
.+
T Consensus 255 ~~ 256 (282)
T cd03291 255 KL 256 (282)
T ss_pred HH
Confidence 44
No 110
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-46 Score=383.52 Aligned_cols=225 Identities=32% Similarity=0.463 Sum_probs=191.4
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCC--CC
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQK--LQ 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~--~~ 529 (703)
+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999974 4699999999999999999999999999999999999863 69999999999875 45
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCC-CC-----CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-GN-----ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~~-----~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
...+|+.++||+|++.+|+.|++|||.++.. .. ..++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5678999999999999999999999988621 11 12344556666666544332 23455678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhH
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~e 682 (703)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+++|+|+|||++..+. .||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999875 499999999999999999999
Q ss_pred HhccCCcHH
Q 005314 683 LVHVKDGIY 691 (703)
Q Consensus 683 Ll~~~~g~Y 691 (703)
+...+...|
T Consensus 232 ~~~~~~~~~ 240 (250)
T PRK14240 232 LFTNPKDKR 240 (250)
T ss_pred HHhCCCChH
Confidence 876434444
No 111
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-46 Score=385.85 Aligned_cols=226 Identities=31% Similarity=0.448 Sum_probs=189.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~--~~~ 530 (703)
.|+++||+|+|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999973 469999999999999999999999999999999999997 489999999999854 445
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC-CCC-----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-GNA-----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~~~-----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|+.++||+|++.+|..|++|||.++.. ... .++++.++++..+++... .........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 678899999999999999999999987621 011 123445555555553211 1223456789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++||||++++|++|||||||++||+++.+.+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999765 999999999999999999999
Q ss_pred hccCCcHHHH
Q 005314 684 VHVKDGIYAS 693 (703)
Q Consensus 684 l~~~~g~Y~~ 693 (703)
...+...|.+
T Consensus 234 ~~~~~~~~~~ 243 (251)
T PRK14251 234 FIAPKKQITS 243 (251)
T ss_pred HhCCCCHHHH
Confidence 7643433443
No 112
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6.6e-46 Score=397.57 Aligned_cols=226 Identities=24% Similarity=0.365 Sum_probs=189.7
Q ss_pred cEEEEEEEEEcCCCC----------CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC
Q 005314 458 DIEFQHITFKYPARP----------DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK 527 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~----------~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~ 527 (703)
-|+++||+++|+.+. ..++++|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999997421 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHH---HHhcceEEEccCC--CCC-cccHHHHHhcCCC---CCCCHHHH----HHHHHHhcHHHHHHHhhccccchhcC
Q 005314 528 LQLK---WLRQQMGLVSQEP--VLF-NDTVRVNIAYGKE---GNATEAEV----LAAAELANAHQFISSLKQGYDTIVGE 594 (703)
Q Consensus 528 ~~~~---~lR~~i~~V~Qe~--~LF-~gTIreNI~~g~~---~~~t~~ei----~~A~~~a~l~~~I~~Lp~G~dT~vGe 594 (703)
++.+ .+|++|+||+|+| .|| ..||.|||.++.. ...+.++. .++++.+++. +.....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~----------~~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL----------PNLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHhcC
Confidence 8754 4678999999999 477 5799999976411 12344443 3333333331 112345
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeC
Q 005314 595 RGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKN 671 (703)
Q Consensus 595 ~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~ 671 (703)
...+||||||||++|||||+.+|++||+|||||+||..+.+.|.+.|.++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6679999999999999999999999999999999999999999999988754 7899999999999975 999999999
Q ss_pred CEEEEecChhHHhccCCcHHHH
Q 005314 672 GVIAEKGKHETLVHVKDGIYAS 693 (703)
Q Consensus 672 G~Ive~Gth~eLl~~~~g~Y~~ 693 (703)
|+|+|.|+.+++++.+...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999998765556766
No 113
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-46 Score=384.69 Aligned_cols=227 Identities=29% Similarity=0.403 Sum_probs=192.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCCCCHHH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQKLQLKW 532 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~~~~~~ 532 (703)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999974 4699999999999999999999999999999999999984 6999999999998888888
Q ss_pred HhcceEEEccCCCCC-cccHHHHHhcCCCC-------CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 533 LRQQMGLVSQEPVLF-NDTVRVNIAYGKEG-------NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 533 lR~~i~~V~Qe~~LF-~gTIreNI~~g~~~-------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
+|+.|+||+|++.+| ..|++||+.++... ...++++.++++..++.+++. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 999999999999755 67999999876211 011245666666666644332 123344578999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++|||||+++|+||||||||++||+.+...+.+.|.++.+++|+|+|||++..+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999885 6999999999999999999999
Q ss_pred hccCCcHHHHH
Q 005314 684 VHVKDGIYASL 694 (703)
Q Consensus 684 l~~~~g~Y~~l 694 (703)
.+.+...+.+.
T Consensus 233 ~~~~~~~~~~~ 243 (250)
T PRK14247 233 FTNPRHELTEK 243 (250)
T ss_pred HcCCccHHHHH
Confidence 86534344443
No 114
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-46 Score=378.14 Aligned_cols=204 Identities=36% Similarity=0.573 Sum_probs=174.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 578999999973 469999999999999999999999999999999999999999999999999986543 578999
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFN-DTVRVNIAYGKEG-NAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~-gTIreNI~~g~~~-~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
||+|++.+|. .|++||+.++... ..+ ++++.++++..++.+++ .....+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-----------NRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHHHH
Confidence 9999999886 6999999876211 111 23345555555554443 34446899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCEEEEec
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKG 678 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~G 678 (703)
|+++|++|||||||++||+++.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998875 3789999999999875 59999999999999876
No 115
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.4e-46 Score=400.73 Aligned_cols=218 Identities=34% Similarity=0.518 Sum_probs=187.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++..... .+++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999974 469999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCCC-----CCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 538 GLVSQEPVLFN-DTVRVNIAYGKEG-----NAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 538 ~~V~Qe~~LF~-gTIreNI~~g~~~-----~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
+||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++.. ....+||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHH
Confidence 99999999997 5999999997321 122 234556666666654443 34568999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHh
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
||||||+++|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||++..+. .||+|++|++|+|++.|+.+++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988764 789999999999865 59999999999999999999998
Q ss_pred ccCCcHH
Q 005314 685 HVKDGIY 691 (703)
Q Consensus 685 ~~~~g~Y 691 (703)
+++...|
T Consensus 226 ~~p~~~~ 232 (353)
T PRK10851 226 REPATRF 232 (353)
T ss_pred hCccchH
Confidence 7644444
No 116
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.8e-46 Score=383.88 Aligned_cols=219 Identities=30% Similarity=0.480 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC---------
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ--------- 529 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~--------- 529 (703)
|+++||+|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999973 46999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhcceEEEccCCCCCc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCC
Q 005314 530 ----LKWLRQQMGLVSQEPVLFN-DTVRVNIAYGKE--GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQ 598 (703)
Q Consensus 530 ----~~~lR~~i~~V~Qe~~LF~-gTIreNI~~g~~--~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 598 (703)
...+|+.++||+|++.+|. .|++||+.++.. ..... +++.++++..+ ++..+.....+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVG-----------LADKADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhHhhcChhh
Confidence 3467899999999999885 799999988521 11122 23344444444 44444556678
Q ss_pred CChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEE
Q 005314 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIA 675 (703)
Q Consensus 599 LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Iv 675 (703)
||||||||++||||++++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||++..+. .||+|++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 789999999999985 59999999999999
Q ss_pred EecChhHHhccCCcHH
Q 005314 676 EKGKHETLVHVKDGIY 691 (703)
Q Consensus 676 e~Gth~eLl~~~~g~Y 691 (703)
+.|+++++.+.+.-.|
T Consensus 227 ~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 227 EQGKPDEIFRQPKEER 242 (252)
T ss_pred EeCCHHHHhcCCCcHH
Confidence 9999999986433334
No 117
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-46 Score=385.82 Aligned_cols=225 Identities=28% Similarity=0.426 Sum_probs=190.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC--C---CCCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD--P---DTGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~--p---~~G~I~idG~di~~--~~~ 530 (703)
-|+++||+|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999973 469999999999999999999999999999999999997 3 58999999999863 455
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCC-C-CCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-N-ATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~-~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|++++||+|++.+|..|++||+.++... . .++ +++.++++..++.+++. +.......+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 6788999999999999999999999886211 1 122 23444555555544332 334567789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++||||++++|+||||||||++||+++...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999975 5999999999999999999998
Q ss_pred hccCCcHHH
Q 005314 684 VHVKDGIYA 692 (703)
Q Consensus 684 l~~~~g~Y~ 692 (703)
.+.+...|.
T Consensus 242 ~~~~~~~~~ 250 (259)
T PRK14274 242 FSNPDDQRT 250 (259)
T ss_pred hhCCCCHHH
Confidence 765444443
No 118
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-46 Score=383.73 Aligned_cols=221 Identities=29% Similarity=0.427 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC--C---CCCeEEECCeeCCCC--CH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD--P---DTGHITLDGVEIQKL--QL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~--p---~~G~I~idG~di~~~--~~ 530 (703)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999973 469999999999999999999999999999999999954 6 499999999998643 45
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--C----CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKE--G----NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~--~----~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|++++||+|++.+|+.|++||+.++.. . +..++++.++++..++++++ .+.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHH
Confidence 678899999999999999999999987521 1 01123445556665554333 2345667789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++||||++++|++|||||||++||+++...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 5999999999999999999999
Q ss_pred hccCC
Q 005314 684 VHVKD 688 (703)
Q Consensus 684 l~~~~ 688 (703)
.+.+.
T Consensus 235 ~~~~~ 239 (252)
T PRK14239 235 FMNPK 239 (252)
T ss_pred HhCCC
Confidence 86433
No 119
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=8.6e-46 Score=380.20 Aligned_cols=217 Identities=29% Similarity=0.513 Sum_probs=187.0
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999973 46999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEccCCCC-CcccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 539 LVSQEPVL-FNDTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 539 ~V~Qe~~L-F~gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
|++|++.+ +..|++||+.++.. ...+.++..+ .+.++++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999988 56899999987621 1122222211 234455554 666666777789999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|+||||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 47999999999999988999999999999999999999864
No 120
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.7e-46 Score=403.17 Aligned_cols=218 Identities=34% Similarity=0.545 Sum_probs=192.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..+.+. +++|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999973 4689999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||+|++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999955 99999999732 1122 245677788888877776665 589999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccCC
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~~ 688 (703)
||+++|++||||||||+||+.+...+.+.|.++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|+.+++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988754 78999999999986 5699999999999999999999987654
Q ss_pred cHH
Q 005314 689 GIY 691 (703)
Q Consensus 689 g~Y 691 (703)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 444
No 121
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.1e-46 Score=353.51 Aligned_cols=208 Identities=32% Similarity=0.515 Sum_probs=186.4
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH---HHHhc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL---KWLRQ 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~---~~lR~ 535 (703)
|+|+||+.+|++. +++|+|+||+|++||++-|+|||||||||++|||++...|+.|+|.++|.|+..+.. -.||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999975 579999999999999999999999999999999999999999999999999988864 46999
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 536 QMGLVSQEPVLFN-DTVRVNIAYGK-----EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 536 ~i~~V~Qe~~LF~-gTIreNI~~g~-----~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
+||+|+||..|.. -|++||++|.- ++..-.+++.++++.+|+.+-...|| .+|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 9999999998765 59999999862 12222457889999999999888887 6899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecC
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gt 679 (703)
|||+..+|++||-||||-+||++....|++.+.++- .|-|+++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999998864 48899999999999976 56899999999997544
No 122
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-46 Score=374.74 Aligned_cols=204 Identities=28% Similarity=0.472 Sum_probs=178.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+|+|++ .++|+|+||+|++| ++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999974 46999999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
||+|++.+|.+ |++|||.+... ...+ ++++.++++..++.++. ++ ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------KK----KIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------hC----chhhCCHHHHHHHHHHHH
Confidence 99999999986 99999987411 0111 34566667776665443 22 346799999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEec
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKG 678 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~G 678 (703)
++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+. .||+|++|++|+|++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998877899999999999986 59999999999999876
No 123
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-46 Score=381.83 Aligned_cols=219 Identities=34% Similarity=0.558 Sum_probs=185.5
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+|+|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 5789999999741 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCCCc-ccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccc--hhcCCCCCCChhHHHHHHHHHHhc
Q 005314 539 LVSQEPVLFN-DTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDT--IVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 539 ~V~Qe~~LF~-gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT--~vGe~G~~LSGGQkQRiaIARAll 614 (703)
||+|++.+|. .|++||+.++.. ...+.++. ...+.++++.+ |+.. .......+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999996 699999987621 01121111 11223334443 3332 345667899999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
++|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++++.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998753 79999999999976 45999999999999999999998764
No 124
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=386.53 Aligned_cols=221 Identities=31% Similarity=0.477 Sum_probs=191.9
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCC--C
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQK--L 528 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~--~ 528 (703)
.+.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999973 4699999999999999999999999999999999999984 89999999999864 4
Q ss_pred CHHHHhcceEEEccCCCCCcccHHHHHhcCCC-CCC-----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 529 QLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-GNA-----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 529 ~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~~~-----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
+..++|+.++||+|++.+|..|++|||.++.. ... .++++.++++.+++.+++. +..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 56688999999999999999999999987621 111 1234666666666654433 3456778899999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChh
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~ 681 (703)
||||++||||++++|+||||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999999998877899999999999875 59999999999999999999
Q ss_pred HHhcc
Q 005314 682 TLVHV 686 (703)
Q Consensus 682 eLl~~ 686 (703)
++.+.
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 99864
No 125
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=9.4e-46 Score=403.67 Aligned_cols=223 Identities=26% Similarity=0.440 Sum_probs=197.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++.+.++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999973 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC-CcccHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 538 GLVSQEPVL-FNDTVRVNIAYGKEG---------NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 538 ~~V~Qe~~L-F~gTIreNI~~g~~~---------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
|||+|++.+ |+.|++||+.+++.+ ..+++++.++++..++.++..+ ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 788999999987421 1234567888888888766543 3568999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhc
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
+|||||+++|+||||||||++||+.+...+++.|+++. +++|+|+++|+++.+ +.||+|++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 478999999999999 5699999999999999999999885
Q ss_pred cCCcHHHHHHH
Q 005314 686 VKDGIYASLVA 696 (703)
Q Consensus 686 ~~~g~Y~~l~~ 696 (703)
.....++|.
T Consensus 229 --~~~l~~~~~ 237 (402)
T PRK09536 229 --ADTLRAAFD 237 (402)
T ss_pred --cHHHHHHhC
Confidence 345555553
No 126
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-46 Score=387.65 Aligned_cols=217 Identities=31% Similarity=0.560 Sum_probs=188.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++|++++|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|++|
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999742 35799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--CCCcccHHHHHhcCCCC-CCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 538 GLVSQEP--VLFNDTVRVNIAYGKEG-NATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 538 ~~V~Qe~--~LF~gTIreNI~~g~~~-~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
+||+|+| .++..|++|||.++... ..+.++ +.++++..++.+++. ....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 45678999999986211 123332 445555555555443 44579999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|||+++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||++..+..||+|++|++|++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 4899999999999989999999999999999999888763
No 127
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-46 Score=379.58 Aligned_cols=211 Identities=30% Similarity=0.480 Sum_probs=179.7
Q ss_pred cEEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH---H
Q 005314 458 DIEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW---L 533 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~---l 533 (703)
-|+++||+|+|+.+. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||+++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997431 247999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEccCCCCCcc-cHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 534 R-QQMGLVSQEPVLFND-TVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 534 R-~~i~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
| +.|+||+|++.+|.. |++||+.++.. ...+. +++.++++.. |++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence 3 689999999999875 99999987411 01122 2344444444 44444555667899999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCEEEEecC
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gt 679 (703)
++||||++.+|+||||||||++||+++...+.+.|.++. +++|+|+|||+++.+..+|++++|++|+|++.|.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998874 4799999999999999999999999999998775
No 128
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-46 Score=389.69 Aligned_cols=216 Identities=28% Similarity=0.461 Sum_probs=187.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC--CCCHHHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ--KLQLKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~--~~~~~~lR~ 535 (703)
-|+++||+|+|+. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 346999999999999999999999999999999999999999999999999984 345677899
Q ss_pred ceEEEccCC--CCCcccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 536 QMGLVSQEP--VLFNDTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 536 ~i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
.|+||+|+| .+|+.|++|||.++.. ...+. +++.++++..+++++ ......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHH
Confidence 999999998 6789999999988521 11232 334555555555443 34567899999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||||+.+|+||||||||++||+++...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+.+++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988754 799999999999986 699999999999999999999876
Q ss_pred c
Q 005314 686 V 686 (703)
Q Consensus 686 ~ 686 (703)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 3
No 129
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1e-45 Score=375.01 Aligned_cols=208 Identities=27% Similarity=0.485 Sum_probs=177.3
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
|+++||+++|+++. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||+++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999997531 1269999999999999999999999999999999999999999999999999975 456788999
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
+|++|++.+|.. |++||+.+... ...+ ++++.++++..++ +........+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM-----------EELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------HHHHhhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999986421 1122 2334444444444 44444567799999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEec
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKG 678 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~G 678 (703)
|++.+|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||++..+. .||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998874 4799999999999875 49999999999999865
No 130
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6.4e-46 Score=401.34 Aligned_cols=220 Identities=30% Similarity=0.474 Sum_probs=190.4
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCC--CeEEECCeeCCCCCHHHH
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT--GHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~--G~I~idG~di~~~~~~~l 533 (703)
.+.|+++||+++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++ |+|.+||.++.+... .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 367999999999973 469999999999999999999999999999999999999999 999999999987665 4
Q ss_pred hcceEEEccCCCCCcc-cHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 534 RQQMGLVSQEPVLFND-TVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
++.|+||+|++.||.. |++|||.|+.. ...+. +++.++++..++.++..+. ..+||||||||+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL-----------PAQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC-----------hhhCCHHHHHHH
Confidence 6789999999999965 99999998732 11232 3456666666666555544 458999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC---CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHH
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV---GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~---~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||||||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+.+++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999988654 68999999999986 55999999999999999999999
Q ss_pred hccCCcHH
Q 005314 684 VHVKDGIY 691 (703)
Q Consensus 684 l~~~~g~Y 691 (703)
.+.+...|
T Consensus 227 ~~~p~~~~ 234 (362)
T TIGR03258 227 YDAPADGF 234 (362)
T ss_pred HhCcCcHH
Confidence 87654444
No 131
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-46 Score=384.94 Aligned_cols=223 Identities=27% Similarity=0.460 Sum_probs=189.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCCCC--HH
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQKLQ--LK 531 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~~~--~~ 531 (703)
-+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 479999999999999999999999999999999999986 47999999999986543 34
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCC-CC------CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 532 WLRQQMGLVSQEPVLFNDTVRVNIAYGKE-GN------ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~~------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
.+|++++||+|++.+|.+|++|||.++.. .+ ..++++.++++..++.+++ .+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 67899999999999999999999987621 01 1123455566666654432 2345566789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++||||++++|+||||||||++||+.+.+.+.+.|.++.+++|+|+|||++..+. .||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 4999999999999999999999
Q ss_pred hccCCcHH
Q 005314 684 VHVKDGIY 691 (703)
Q Consensus 684 l~~~~g~Y 691 (703)
.+.+...|
T Consensus 236 ~~~~~~~~ 243 (251)
T PRK14244 236 FKNPQSSK 243 (251)
T ss_pred hcCCCChH
Confidence 87544444
No 132
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=385.35 Aligned_cols=223 Identities=27% Similarity=0.437 Sum_probs=192.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+|+|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999973 4699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEG---------NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~---------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
+||+|++.+|.+ |++||+.++... ...++++.++++..++.+++... ..+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHH
Confidence 999999877655 999999986210 11234567777777776554443 358999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHh
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
+||||++.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..+. .||+|++|++|+|++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 789999999999985 59999999999999999999987
Q ss_pred ccCCcHHHHHHH
Q 005314 685 HVKDGIYASLVA 696 (703)
Q Consensus 685 ~~~~g~Y~~l~~ 696 (703)
+ ...+..++.
T Consensus 237 ~--~~~~~~~~~ 246 (265)
T PRK10575 237 R--GETLEQIYG 246 (265)
T ss_pred C--HHHHHHHhC
Confidence 4 334555553
No 133
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=387.30 Aligned_cols=215 Identities=29% Similarity=0.490 Sum_probs=189.0
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|+++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999742 35999999999999999999999999999999999999999999999999998878888899999
Q ss_pred EEccCC--CCCcccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 539 LVSQEP--VLFNDTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 539 ~V~Qe~--~LF~gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
||+|++ .+|+.|++|||.++.. ...+. +++.++++..++.+++.+. ...||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHHH
Confidence 999998 4788999999987621 12233 3456667776766655443 4689999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+.+++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988754 78999999999998 56999999999999999999999764
No 134
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=383.34 Aligned_cols=225 Identities=30% Similarity=0.450 Sum_probs=189.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCCC--CH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQKL--QL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~~--~~ 530 (703)
.|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999973 4699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
..+|++++||+|++.+|..|++|||.++.. ...+. +++.++++..++.+++ ..........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 567889999999999999999999987621 11222 2345555555543221 22334566789999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHh
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
|++|||||+.+|+||||||||++||+++...+.+.|.++.+++|+|+|||++..+. .||+|++|++|+|++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998877899999999999985 49999999999999999999998
Q ss_pred ccCCcHHH
Q 005314 685 HVKDGIYA 692 (703)
Q Consensus 685 ~~~~g~Y~ 692 (703)
+.+...|.
T Consensus 242 ~~~~~~~~ 249 (258)
T PRK14268 242 HNPREKST 249 (258)
T ss_pred cCCCCHHH
Confidence 65444443
No 135
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=382.41 Aligned_cols=224 Identities=29% Similarity=0.439 Sum_probs=189.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC---CCC--CCCeEEECCeeCCCC--CH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF---YDP--DTGHITLDGVEIQKL--QL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~---y~p--~~G~I~idG~di~~~--~~ 530 (703)
.|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+ ++| ++|+|.+||+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999973 4699999999999999999999999999999999997 454 589999999998754 35
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC-CCC-----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-GNA-----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~~~-----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|++|+||+|++.+|..|++|||.++.. ... .++++.++++..++.+++ ++.......+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHH
Confidence 678899999999999999999999987621 011 123455555555554333 2345567889999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++||||++++|+||||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999985 5999999999999999999999
Q ss_pred hccCCcHH
Q 005314 684 VHVKDGIY 691 (703)
Q Consensus 684 l~~~~g~Y 691 (703)
.+.+...|
T Consensus 233 ~~~~~~~~ 240 (250)
T PRK14245 233 FTNPEKEA 240 (250)
T ss_pred hcCCCChH
Confidence 86534344
No 136
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-45 Score=388.07 Aligned_cols=217 Identities=32% Similarity=0.545 Sum_probs=184.1
Q ss_pred EEEEEEEEEcCCCC--CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC----CCHHH
Q 005314 459 IEFQHITFKYPARP--DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK----LQLKW 532 (703)
Q Consensus 459 I~~~~vsF~Y~~~~--~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~----~~~~~ 532 (703)
|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1469999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEccCC--CCCcccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 533 LRQQMGLVSQEP--VLFNDTVRVNIAYGKE-GNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 533 lR~~i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
+|+.||||+|+| .+|+.|++|||.|+.. ...+.++ +.++++..++++ ........+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence 888999999998 6899999999998731 1233333 334444444421 1224456789999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhH
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~e 682 (703)
|++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+.++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988753 789999999999885 599999999999999999998
Q ss_pred Hhc
Q 005314 683 LVH 685 (703)
Q Consensus 683 Ll~ 685 (703)
+.+
T Consensus 233 ~~~ 235 (290)
T PRK13634 233 IFA 235 (290)
T ss_pred Hhc
Confidence 865
No 137
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.6e-45 Score=385.36 Aligned_cols=225 Identities=27% Similarity=0.423 Sum_probs=188.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH---HHh
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK---WLR 534 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~---~lR 534 (703)
-|+++||+|+|+. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877643 457
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCCC--CCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 535 QQMGLVSQEPVLFND-TVRVNIAYGKEG--NATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~g-TIreNI~~g~~~--~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
++++||+|++.+|.+ |++|||.++... ..+. +++.++++..++.+ .......+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 889999999999986 999999875211 1122 22333444444332 23334568999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHh
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl 684 (703)
+|||||+++|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|+|++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998865 9999999999999999999998
Q ss_pred ccCCcHHHHHHH
Q 005314 685 HVKDGIYASLVA 696 (703)
Q Consensus 685 ~~~~g~Y~~l~~ 696 (703)
+.+...++.++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 753445566654
No 138
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=385.02 Aligned_cols=219 Identities=27% Similarity=0.437 Sum_probs=186.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~--~~~ 530 (703)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999973 469999999999999999999999999999999999875 799999999999865 345
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CC----CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKE--GN----ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~--~~----~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|++++||+|++.+|.+|++||+.++.. .. ..++.+.++++..++.+.+ .........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHH
Confidence 678899999999999999999999987521 11 1123345555555543222 1234566789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877889999999999875 5999999999999999999999
Q ss_pred hcc
Q 005314 684 VHV 686 (703)
Q Consensus 684 l~~ 686 (703)
...
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 864
No 139
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.5e-45 Score=377.41 Aligned_cols=217 Identities=26% Similarity=0.453 Sum_probs=185.9
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcce
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~i 537 (703)
|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999973 46999999999999999999999999999999999999999999999999998877655 45789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
+|++|++.+|.+ |++||+.++.. .....++.. ..+++++..+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 99999987621 112222221 1234455555 66666667778999999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhc
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
+|++|||||||++||+++.+.+.+.|.++. +++|+|++||++..+. .||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 4789999999998664 599999999999999999999874
No 140
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=379.46 Aligned_cols=219 Identities=31% Similarity=0.499 Sum_probs=183.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC------CCCHH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ------KLQLK 531 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~------~~~~~ 531 (703)
.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .....
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999973 46999999999999999999999999999999999999999999999999873 23456
Q ss_pred HHhcceEEEccCCCCCcc-cHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 532 WLRQQMGLVSQEPVLFND-TVRVNIAYGKE--GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~LF~g-TIreNI~~g~~--~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
.+|++|+|++|++.+|.+ |++|||.++.. ...+.++..+ .+.+++..+ |++..+.....+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 788999999999999975 99999975311 0122222111 133444444 4555555566799999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
||||++++|+||||||||++||+++...+.+.|.++. +++|+|+|||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 231 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQP 231 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCc
Confidence 9999999999999999999999999999999998875 47999999999999864 999999999999999999998653
No 141
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-45 Score=387.70 Aligned_cols=218 Identities=26% Similarity=0.469 Sum_probs=190.2
Q ss_pred cEEEEEEEEEcCCCC---CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC-HHHH
Q 005314 458 DIEFQHITFKYPARP---DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ-LKWL 533 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~---~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~-~~~l 533 (703)
-|+++||+|+|++.. .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcceEEEccCCC--CCcccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 534 RQQMGLVSQEPV--LFNDTVRVNIAYGKEG-NAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 534 R~~i~~V~Qe~~--LF~gTIreNI~~g~~~-~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
|++++||+|+|. +|..|+.||+.|+... ..+ ++++.++++..++.+++.+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 7778999999987211 122 345667777777776665543 6899999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHh
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
++|||||+++|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+..||+|++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 379999999999999889999999999999999999987
Q ss_pred cc
Q 005314 685 HV 686 (703)
Q Consensus 685 ~~ 686 (703)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
No 142
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=381.10 Aligned_cols=228 Identities=28% Similarity=0.427 Sum_probs=192.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCCC--CH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQKL--QL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~~--~~ 530 (703)
.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999973 4699999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCC-C-----CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-N-----ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~-----~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|+.++|++|++.+|..|++||+.++... . ..++++.++++..++++.+. +.......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 5678899999999999999999999875211 1 12234566666666654332 234567789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++||||++++|+||||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998877899999999999764 5999999999999999999999
Q ss_pred hccCCcHHHHHH
Q 005314 684 VHVKDGIYASLV 695 (703)
Q Consensus 684 l~~~~g~Y~~l~ 695 (703)
.+.+...|.+.+
T Consensus 233 ~~~~~~~~~~~~ 244 (250)
T PRK14262 233 VERPKNKLTEEY 244 (250)
T ss_pred HhCCCChHHHHH
Confidence 865333455444
No 143
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=384.07 Aligned_cols=220 Identities=27% Similarity=0.425 Sum_probs=191.0
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCC--CC
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQK--LQ 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~--~~ 529 (703)
..|+++||+|+|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999963 579999999999999999999999999999999999997 589999999999864 34
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCCC-CC-----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-NA-----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~~-----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
...+|+.|+||+|++.+|..|++|||.++... .. .++++.++++..++.+++ ++.......+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHH
Confidence 66789999999999999999999999886211 11 123456666666665444 234567788999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhH
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~e 682 (703)
|||++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999885 599999999999999999999
Q ss_pred Hhcc
Q 005314 683 LVHV 686 (703)
Q Consensus 683 Ll~~ 686 (703)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 9764
No 144
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.8e-46 Score=373.31 Aligned_cols=200 Identities=30% Similarity=0.514 Sum_probs=174.7
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEE
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~ 539 (703)
+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+|++|+|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999741 469999999999999999999999999999999999999999999999998864 467789999
Q ss_pred EccCC--CCCcccHHHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 540 VSQEP--VLFNDTVRVNIAYGKEG-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 540 V~Qe~--~LF~gTIreNI~~g~~~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
++|++ .+|..|++||+.++... ...++++.++++..++.++....| ..||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 47889999999986321 122356778888887766655444 48999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHh-hcCEEEEEeCCEEE
Q 005314 617 PKILLLDEATSALDAESERVIQDALERV-MVGRTTVVIAHRLSTIR-DADLIAVVKNGVIA 675 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~-~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Iv 675 (703)
|++|||||||++||+++.+.+.+.|.++ .+++|+|++||+++.+. .||+|++|++|++|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 45789999999999986 49999999999985
No 145
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=7.3e-46 Score=376.10 Aligned_cols=205 Identities=35% Similarity=0.516 Sum_probs=173.8
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH----HH
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK----WL 533 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~----~l 533 (703)
|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 14799999999999999999999999999999999999999999999999999887643 35
Q ss_pred hcceEEEccCCCCCcc-cHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 534 RQQMGLVSQEPVLFND-TVRVNIAYGKEG-NAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~g-TIreNI~~g~~~-~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
|++++||+|++.+|.+ |++||+.++... ... ++++.++++.. |++........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERV-----------GLGDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc-----------CCchhhhcChhhcCHHHHHHH
Confidence 6789999999999986 999999986211 111 12344444444 444444455678999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCEE
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVI 674 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~G~I 674 (703)
+|||||+.+|+||||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7999999999999989999999999975
No 146
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-45 Score=386.22 Aligned_cols=217 Identities=32% Similarity=0.530 Sum_probs=191.0
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCC---CeEEECCeeCCCCCHHHH
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT---GHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~---G~I~idG~di~~~~~~~l 533 (703)
..|+++|++|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999743 3469999999999999999999999999999999999999998 899999999988887888
Q ss_pred hcceEEEccCC--CCCcccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 534 RQQMGLVSQEP--VLFNDTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 534 R~~i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
|++||||+|+| .+++.|++|||.|+.. ...+. +++.++++..++.++....| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 99999999998 4678999999998621 12333 33666777777766555443 7999999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHh
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++.|+.++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988753 78999999999999999999999999999999999886
Q ss_pred c
Q 005314 685 H 685 (703)
Q Consensus 685 ~ 685 (703)
.
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 5
No 147
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-45 Score=374.09 Aligned_cols=210 Identities=24% Similarity=0.437 Sum_probs=180.8
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 579999999973 4699999999999999999999999999999999999999999999999998763 456788999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC-CCC----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKE-GNA----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~-~~~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
||+|++.+|.. |++|||.++.. ... .++++.++++..++.++... ...+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999875 99999987411 011 23355666666666554433 235899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHH
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eL 683 (703)
++.+|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988653 7899999999998865 999999999999999998774
No 148
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.7e-45 Score=370.78 Aligned_cols=204 Identities=26% Similarity=0.440 Sum_probs=180.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 4799999999999999999999999999999999999999999999999998765 56788999
Q ss_pred EEccCCCCC-cccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 539 LVSQEPVLF-NDTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 539 ~V~Qe~~LF-~gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
||+|++.+| +.|++|||.++.. ...+++++.++++..++.+++.. ...+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 5799999987621 12356677888888877665443 3468999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEec
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKG 678 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~G 678 (703)
|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||++..+. .||+|++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998865 4799999999999886 49999999999999876
No 149
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-45 Score=381.96 Aligned_cols=223 Identities=29% Similarity=0.492 Sum_probs=192.7
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..++..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999973 46999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKEG---------NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~~---------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
||+|++.+|.+ |++||+.++... ...++++.++++..++.++. .....+||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHHHHHHHH
Confidence 99999999876 999999986210 11223455666666654433 3456789999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
||||++.+|++|||||||++||+++.+.+.+.|.++. +++|+|++||++..+. .||+|++|++|++++.|+.+++.+
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT- 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence 9999999999999999999999999999999998865 4789999999999985 599999999999999999999875
Q ss_pred CCcHHHHHHHh
Q 005314 687 KDGIYASLVAL 697 (703)
Q Consensus 687 ~~g~Y~~l~~~ 697 (703)
...+.+++..
T Consensus 228 -~~~~~~~~~~ 237 (255)
T PRK11231 228 -PGLLRTVFDV 237 (255)
T ss_pred -HHHHHHHhCC
Confidence 3456666643
No 150
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-45 Score=379.93 Aligned_cols=229 Identities=26% Similarity=0.408 Sum_probs=193.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCCC--CH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQKL--QL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~~--~~ 530 (703)
.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999973 4699999999999999999999999999999999999863 489999999999876 45
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCC-CC-C----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-NA-T----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~~-t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
...|+.|+||+|++.+|+.|++|||.++... .. . ++++.++++..++.+ ++.+.......+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHH
Confidence 6788999999999999999999999986210 11 1 223445555544432 333456777889999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++||||++.+|++|||||||++||+++.+.+.+.|.++.+++|+|++||++..+. .||+|++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 5999999999999999999999
Q ss_pred hccCCcHHHHHHH
Q 005314 684 VHVKDGIYASLVA 696 (703)
Q Consensus 684 l~~~~g~Y~~l~~ 696 (703)
...+...+.+.|.
T Consensus 236 ~~~~~~~~~~~~~ 248 (253)
T PRK14261 236 FENPHEELTENYI 248 (253)
T ss_pred HhCCCcHHHHHHh
Confidence 7653334555443
No 151
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.5e-45 Score=378.17 Aligned_cols=219 Identities=33% Similarity=0.512 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC--------
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ-------- 529 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~-------- 529 (703)
.|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999973 46999999999999999999999999999999999999999999999999987542
Q ss_pred HHHHhcceEEEccCCCCCc-ccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 530 LKWLRQQMGLVSQEPVLFN-DTVRVNIAYGKE--GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~-gTIreNI~~g~~--~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
...+|++++||+|++.+|. .|++||+.++.. .....++..+. ++++++.+ |++........+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3567889999999999986 699999987511 11222222211 23344443 45544556778999999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHh
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl 684 (703)
++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988754 7899999999999865 9999999999999999999987
Q ss_pred cc
Q 005314 685 HV 686 (703)
Q Consensus 685 ~~ 686 (703)
+.
T Consensus 233 ~~ 234 (250)
T PRK11264 233 AD 234 (250)
T ss_pred cC
Confidence 54
No 152
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=384.09 Aligned_cols=221 Identities=26% Similarity=0.411 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~--~~~ 530 (703)
.|+++||+|+|+. .++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999973 469999999999999999999999999999999999997 699999999999853 456
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC-CCCCH-----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-GNATE-----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~~~t~-----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|++++|++|++.+|..|++|||.++.. .+.++ +.+.++++..++. +++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 678899999999999999999999987521 11221 1223333333322 2333445677889999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++|||||+++|+||||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 5999999999999999999999
Q ss_pred hccCC
Q 005314 684 VHVKD 688 (703)
Q Consensus 684 l~~~~ 688 (703)
...+.
T Consensus 254 ~~~~~ 258 (271)
T PRK14238 254 FSNPS 258 (271)
T ss_pred HcCCC
Confidence 76433
No 153
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-45 Score=399.73 Aligned_cols=218 Identities=30% Similarity=0.473 Sum_probs=186.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 4899999999973 469999999999999999999999999999999999999999999999999987665 35789
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFN-DTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~-gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
+||+|++.+|. .|++|||.|+.. ...+. +++.++++..++.++..+ ...+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999996 499999998732 11222 345666666665544433 44689999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhccCC
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~~ 688 (703)
||+++|++||||||||+||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+.+++...+.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988753 789999999999875 599999999999999999999987544
Q ss_pred cHH
Q 005314 689 GIY 691 (703)
Q Consensus 689 g~Y 691 (703)
..|
T Consensus 227 ~~~ 229 (369)
T PRK11000 227 NRF 229 (369)
T ss_pred cHH
Confidence 333
No 154
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.9e-45 Score=376.09 Aligned_cols=214 Identities=29% Similarity=0.485 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcce
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~i 537 (703)
|+++||+|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 579999999973 46999999999999999999999999999999999999999999999999998887655 46789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEG-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
+|++|++.+|.. |++||+.++... ..+.++. .++.+.. .++++........+||||||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--------~~~~l~~-~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYEL-FPVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHH--------HHHHHHH-HHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999886221 1111111 1122222 2233444556677899999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHh
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl 684 (703)
+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999988754 7899999999999875 9999999999999999999983
No 155
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-45 Score=375.62 Aligned_cols=218 Identities=26% Similarity=0.396 Sum_probs=184.0
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~ 536 (703)
.|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..++... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999973 46999999999999999999999999999999999999999999999999998887654 6789
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
++||+|++.+|.+ |++|||.++.. ..+.++..+. +.+++..++...++ ......+||||||||++||||+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~-----~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGF-FAERDQFQER-----IKWVYELFPRLHER-RIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhh-ccChhHHHHH-----HHHHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHHHHHh
Confidence 9999999999985 99999998631 1222222222 22233333322222 234567899999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhc
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
+|+||||||||++||+++.+.+.+.|.++. +++|+|++||+++.+ +.||+|++|++|+|++.|+++++.+
T Consensus 155 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999998865 489999999999976 5699999999999999999999975
No 156
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.5e-45 Score=382.04 Aligned_cols=226 Identities=30% Similarity=0.436 Sum_probs=187.2
Q ss_pred EEEEEEEEEcCCC------CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH-
Q 005314 459 IEFQHITFKYPAR------PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK- 531 (703)
Q Consensus 459 I~~~~vsF~Y~~~------~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~- 531 (703)
|+++||+|+|+.. .++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999732 135799999999999999999999999999999999999999999999999999887654
Q ss_pred --HHhcceEEEccCCC--CC-cccHHHHHhcCCC--CCCC----HHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCC
Q 005314 532 --WLRQQMGLVSQEPV--LF-NDTVRVNIAYGKE--GNAT----EAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQL 599 (703)
Q Consensus 532 --~lR~~i~~V~Qe~~--LF-~gTIreNI~~g~~--~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~L 599 (703)
.+|++|+||+|++. ++ ..|++|||.++.. .... ++++.++ ++.+ |++ ........+|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~---------l~~~--gl~~~~~~~~~~~L 151 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAEL---------LDMV--GLRSEDADKLPRQL 151 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH---------HHHc--CCChhhhhCChhhC
Confidence 36889999999983 44 4799999975411 0111 2233333 3333 443 2345677899
Q ss_pred ChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEE
Q 005314 600 SGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAE 676 (703)
Q Consensus 600 SGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive 676 (703)
|||||||++||||++.+|+||||||||++||+++.+.+.+.|.++.+ ++|+|+|||++..+. .||+|++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998754 789999999999996 599999999999999
Q ss_pred ecChhHHhccCCcHHHHHH
Q 005314 677 KGKHETLVHVKDGIYASLV 695 (703)
Q Consensus 677 ~Gth~eLl~~~~g~Y~~l~ 695 (703)
.|++++++..++..|+.+.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcCCCCHHHHHHH
Confidence 9999999874344454443
No 157
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.9e-45 Score=373.82 Aligned_cols=206 Identities=31% Similarity=0.514 Sum_probs=174.1
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH---Hh
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW---LR 534 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~---lR 534 (703)
|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 246999999999999999999999999999999999999999999999999998877543 34
Q ss_pred -cceEEEccCCCCCc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 535 -QQMGLVSQEPVLFN-DTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 535 -~~i~~V~Qe~~LF~-gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
+.|+||+|++.+|. .|++||+.++.. ...+. +++.++++.. |++........+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKV-----------GLEHRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHHHH
Confidence 78999999999995 599999987411 01121 2233333333 444444555678999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCEEE
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKNGVIA 675 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~G~Iv 675 (703)
+||||++++|+||||||||++||+++.+.+.+.|.++. .++|+|+|||++..+..||+|++|++|+|+
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998875 378999999999999999999999999986
No 158
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-45 Score=378.83 Aligned_cols=224 Identities=25% Similarity=0.431 Sum_probs=189.9
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC--C---CCCeEEECCeeCCCC--C
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD--P---DTGHITLDGVEIQKL--Q 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~--p---~~G~I~idG~di~~~--~ 529 (703)
+.|+++|++|+|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++... .
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999973 469999999999999999999999999999999999986 4 689999999998643 4
Q ss_pred HHHHhcceEEEccCCCCCc-ccHHHHHhcCCCC-C-CC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 530 LKWLRQQMGLVSQEPVLFN-DTVRVNIAYGKEG-N-AT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~-gTIreNI~~g~~~-~-~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
...+|++|+||+|++.+|. .|++|||.++... . .+ ++++.++++..++.+++.. .......+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 5678999999999999998 5999999875210 1 11 2345566666666544432 234567799999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChh
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~ 681 (703)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+. .||+|++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877899999999999985 59999999999999999999
Q ss_pred HHhccCCcH
Q 005314 682 TLVHVKDGI 690 (703)
Q Consensus 682 eLl~~~~g~ 690 (703)
++...+...
T Consensus 233 ~~~~~~~~~ 241 (252)
T PRK14256 233 KIFTTPEKK 241 (252)
T ss_pred HHHhCCCcH
Confidence 997643333
No 159
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3e-45 Score=377.19 Aligned_cols=218 Identities=31% Similarity=0.536 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC--CHHHHhcc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL--QLKWLRQQ 536 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~--~~~~lR~~ 536 (703)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..++|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999973 4699999999999999999999999999999999999999999999999999764 34678899
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 537 MGLVSQEPVLFN-DTVRVNIAYGKE--GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 537 i~~V~Qe~~LF~-gTIreNI~~g~~--~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
++|++|++.+|. .|++||+.++.. ...+.++..+ .+.+.++.+ |++........+||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999999886 599999988621 1122222211 123344443 555555566689999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
+++|++|||||||++||+++...+.+.|.++. +++|+|+|||++..+.. ||+|++|++|++++.|+.+++++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 47999999999999864 999999999999999999998764
No 160
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-45 Score=377.73 Aligned_cols=219 Identities=27% Similarity=0.476 Sum_probs=188.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC-----CCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD-----TGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~-----~G~I~idG~di~~--~~~ 530 (703)
.|+++||+|+|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999973 46999999999999999999999999999999999999997 6999999999864 345
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCC-CC-C----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-NA-T----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~~-t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|+.++||+|++.+|..|++|||.++... .. . ++.+.++++..++.+++ .+.......+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 6789999999999999999999999986210 11 1 23344455555554433 2345677889999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888678999999999999866 799999999999999999998
Q ss_pred hcc
Q 005314 684 VHV 686 (703)
Q Consensus 684 l~~ 686 (703)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 753
No 161
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-45 Score=378.67 Aligned_cols=224 Identities=29% Similarity=0.458 Sum_probs=191.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCC-CCCHH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQ-KLQLK 531 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~-~~~~~ 531 (703)
.|+++||+|+|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999973 4699999999999999999999999999999999999986 5999999999985 45677
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCCC-CCC-----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 532 WLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-NAT-----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~~t-----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
.+|+.++||+|++.+|..|++|||.++... ... ++++.++++..++++++ .+.......+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHH
Confidence 889999999999999999999999886211 111 23345556666654433 23445667899999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHh
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl 684 (703)
|++||||++.+|+||||||||++||+.+.+.+.+.|.++.+++|+|+|||++..+.. ||+|++|++|+|++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999987
Q ss_pred ccCCcHH
Q 005314 685 HVKDGIY 691 (703)
Q Consensus 685 ~~~~g~Y 691 (703)
+.+...|
T Consensus 233 ~~~~~~~ 239 (249)
T PRK14253 233 SNPKDDR 239 (249)
T ss_pred cCCCChH
Confidence 5434433
No 162
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.9e-45 Score=380.12 Aligned_cols=216 Identities=29% Similarity=0.474 Sum_probs=184.7
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC--------
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL-------- 528 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~-------- 528 (703)
+.|+++||+|+|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999973 4699999999999999999999999999999999999999999999999998642
Q ss_pred -----CHHHHhcceEEEccCCCCCcc-cHHHHHhcCCC--CCCCH----HHHHHHHHHhcHHHHHHHhhccccchh-cCC
Q 005314 529 -----QLKWLRQQMGLVSQEPVLFND-TVRVNIAYGKE--GNATE----AEVLAAAELANAHQFISSLKQGYDTIV-GER 595 (703)
Q Consensus 529 -----~~~~lR~~i~~V~Qe~~LF~g-TIreNI~~g~~--~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~v-Ge~ 595 (703)
....+|+.++||+|++.+|.. |++||+.++.. ..... +++.++++..+ +.... ...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~ 149 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVG-----------IDERAQGKY 149 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CChhhhhCC
Confidence 235778999999999999975 99999987510 01122 23344444444 43332 456
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCE
Q 005314 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGV 673 (703)
Q Consensus 596 G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~ 673 (703)
..+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999998875 48999999999999986 99999999999
Q ss_pred EEEecChhHHhcc
Q 005314 674 IAEKGKHETLVHV 686 (703)
Q Consensus 674 Ive~Gth~eLl~~ 686 (703)
+++.|+++++++.
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999999999764
No 163
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-45 Score=380.77 Aligned_cols=226 Identities=29% Similarity=0.461 Sum_probs=191.2
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCC--CC
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQK--LQ 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~--~~ 529 (703)
..|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 36999999999973 469999999999999999999999999999999999998 689999999999863 56
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCCC-CC---CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-NA---TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~~---t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
..++|++|+||+|++.+|..|++||+.++... .. .++++.++++..++.++ +++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHH
Confidence 77889999999999999999999999986321 11 13345556666555332 233455667899999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeC-----------CE
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTI-RDADLIAVVKN-----------GV 673 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti-~~aD~I~vl~~-----------G~ 673 (703)
|++|||||+++|++|||||||++||+.+.+.+.+.|.++.+++|+|+|||++..+ ..||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 9999999999999999999999999999999999999887789999999999987 45999999996 67
Q ss_pred EEEecChhHHhccCCcHHH
Q 005314 674 IAEKGKHETLVHVKDGIYA 692 (703)
Q Consensus 674 Ive~Gth~eLl~~~~g~Y~ 692 (703)
|+|.|+-+++.+.+...|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~ 260 (269)
T PRK14259 242 LVEFNETKKIFNSPKQKAT 260 (269)
T ss_pred EEEeCCHHHHHhCcCChHH
Confidence 9999999998764333343
No 164
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-45 Score=380.54 Aligned_cols=221 Identities=27% Similarity=0.456 Sum_probs=190.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCC--CCCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQ--KLQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~--~~~~ 530 (703)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.+||+++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999973 469999999999999999999999999999999999986 47999999999985 3456
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCC-C---CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-N---ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~---~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
.++|++|+||+|++.+|+.|++|||.++... . ..++++.++++.+++.+++.. .......+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 7789999999999999999999999986311 1 113445666777777655532 3456678999999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEe---------CCEEEE
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVK---------NGVIAE 676 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~---------~G~Ive 676 (703)
++|||||+++|+||||||||++||+++...+.+.|.++.+++|+|+|||++..+. .||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999998877889999999999875 599999999 899999
Q ss_pred ecChhHHhccCC
Q 005314 677 KGKHETLVHVKD 688 (703)
Q Consensus 677 ~Gth~eLl~~~~ 688 (703)
.|+.+|+.+.+.
T Consensus 240 ~~~~~~~~~~~~ 251 (264)
T PRK14243 240 FDRTEKIFNSPQ 251 (264)
T ss_pred eCCHHHHHhCCC
Confidence 999999976433
No 165
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-45 Score=368.82 Aligned_cols=218 Identities=28% Similarity=0.484 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++|++|+|.++ ++|+||||+|++|+++|||||||||||||+|+++|+..|.+|+|.++|.++++... +..|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999743 59999999999999999999999999999999999999999999999998876544 5789
Q ss_pred EEEccCC---CCCcccHHHHHhcCCCCC---------CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 538 GLVSQEP---VLFNDTVRVNIAYGKEGN---------ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 538 ~~V~Qe~---~LF~gTIreNI~~g~~~~---------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
|||||.. +=|.-||+|=+.+|+... .+.+++.+|++.+|+.++..+ ++ ..|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i----~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QI----GELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------cc----cccCcHHHH
Confidence 9999954 568999999999984221 235889999999999988654 34 469999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHH
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eL 683 (703)
|+.|||||+.+|++|||||||+++|+.++..+.+-|.++.+ |+|+++|+|+|+.+.. +|+|+.|. ++++..|+.++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999998765 8999999999999855 99999996 667889999988
Q ss_pred hccCCcHHHHHH
Q 005314 684 VHVKDGIYASLV 695 (703)
Q Consensus 684 l~~~~g~Y~~l~ 695 (703)
+. ...+.+.+
T Consensus 226 ~~--~~~l~~~~ 235 (254)
T COG1121 226 LT--EENLEKAF 235 (254)
T ss_pred cC--HHHHHHHh
Confidence 75 33444444
No 166
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-45 Score=392.46 Aligned_cols=228 Identities=25% Similarity=0.361 Sum_probs=187.7
Q ss_pred EEEEEEEEEcCCCCC-cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC----CCCCeEEECCeeCCCCCHHHH
Q 005314 459 IEFQHITFKYPARPD-VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD----PDTGHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~-~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~----p~~G~I~idG~di~~~~~~~l 533 (703)
|+++||++.|+.+.. ..+|+|+||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999975311 469999999999999999999999999999999999998 489999999999999987765
Q ss_pred hc----ceEEEccCCC--CCc-ccHHHH----HhcCCC--CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 534 RQ----QMGLVSQEPV--LFN-DTVRVN----IAYGKE--GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 534 R~----~i~~V~Qe~~--LF~-gTIreN----I~~g~~--~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
|+ +|+||+|+|. |+. -|+.+| +..... ....++++.++++..++.+.. ........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 53 7999999995 332 355554 433211 111234566666666664321 22446778999
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEe
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEK 677 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~ 677 (703)
||||||++|||||+.+|++||+|||||+||+.+...|.+.|.++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 789999999999984 6999999999999999
Q ss_pred cChhHHhccCCcHHHHH
Q 005314 678 GKHETLVHVKDGIYASL 694 (703)
Q Consensus 678 Gth~eLl~~~~g~Y~~l 694 (703)
|+.+++++.+...|.+.
T Consensus 236 g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQA 252 (326)
T ss_pred CCHHHHhhCCCChHHHH
Confidence 99999997656667653
No 167
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.1e-45 Score=370.66 Aligned_cols=210 Identities=28% Similarity=0.448 Sum_probs=188.9
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH----HHHhc
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL----KWLRQ 535 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~----~~lR~ 535 (703)
.+.|++|+|+.+ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999853 579999999999999999999999999999999999999999999999999876542 34678
Q ss_pred ceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 536 QMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 536 ~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
.++|++|++.+|+.|++|||.++. ..++++..++++..++.+++..+|.|++|.++....+||||||||++||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999873 235667788889999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHH--HHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCE
Q 005314 616 APKILLLDEATSALDAESERVIQD--ALERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGV 673 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~--~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~ 673 (703)
+|++|||||||++||+.+...+.+ .+..+. .++|+|++||+++.++.||+|++|++|.
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999998887 444443 3689999999999999999999999884
No 168
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.3e-45 Score=392.33 Aligned_cols=229 Identities=26% Similarity=0.357 Sum_probs=190.2
Q ss_pred cEEEEEEEEEcCCC-CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC---CCeEEECCeeCCCCCHHHH
Q 005314 458 DIEFQHITFKYPAR-PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD---TGHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~-~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~---~G~I~idG~di~~~~~~~l 533 (703)
-|+++||++.|+.+ ...++++|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999742 1357999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cceEEEccCC--CCCc-ccHHHHHhcCC--CCCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 534 R----QQMGLVSQEP--VLFN-DTVRVNIAYGK--EGNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 534 R----~~i~~V~Qe~--~LF~-gTIreNI~~g~--~~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
| ++|+||+|+| .|+. .|+.+||.... ....+.++ +.++++.. .||++++ .++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-------gL~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV-------KMPEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCChHH-HhcCCcccCC
Confidence 4 5899999999 4544 47777775321 01123333 23333333 3455443 3677889999
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEe
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEK 677 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~ 677 (703)
||||||++|||||+.+|++||+|||||+||..+...|.+.|.++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 789999999999986 5999999999999999
Q ss_pred cChhHHhccCCcHHHHH
Q 005314 678 GKHETLVHVKDGIYASL 694 (703)
Q Consensus 678 Gth~eLl~~~~g~Y~~l 694 (703)
|+.+++.+.+...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998666678764
No 169
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.8e-45 Score=371.81 Aligned_cols=204 Identities=35% Similarity=0.573 Sum_probs=174.5
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 579999999974 4699999999999999999999999999999999999999999999999999766543 57899
Q ss_pred EEccCCCCCc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFN-DTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~-gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
||+|++.+|. .|++||+.++.. ...+. +++.++++..++.+++ .....+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999985 699999987621 11222 2344555555554443 34457899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEec
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKG 678 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~G 678 (703)
++++|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999988753 7899999999998765 9999999999999876
No 170
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-45 Score=386.83 Aligned_cols=218 Identities=26% Similarity=0.458 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCC--CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC---------
Q 005314 459 IEFQHITFKYPARP--DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK--------- 527 (703)
Q Consensus 459 I~~~~vsF~Y~~~~--~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~--------- 527 (703)
|+++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 89999999997531 2369999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHHhcceEEEccCC--CCCcccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHHhh
Q 005314 528 ---------------LQLKWLRQQMGLVSQEP--VLFNDTVRVNIAYGKE-GNATEAE----VLAAAELANAHQFISSLK 585 (703)
Q Consensus 528 ---------------~~~~~lR~~i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~~e----i~~A~~~a~l~~~I~~Lp 585 (703)
.+...+|++||||+|+| .+|..|++|||.|+.. ...+.++ +.++++..++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------ 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 23567899999999986 7899999999998731 1233333 444444444420
Q ss_pred ccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhc
Q 005314 586 QGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDA 663 (703)
Q Consensus 586 ~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~a 663 (703)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||++..+ +.|
T Consensus 157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 22345667999999999999999999999999999999999999999999998874 489999999999976 569
Q ss_pred CEEEEEeCCEEEEecChhHHhcc
Q 005314 664 DLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 664 D~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|+|++|++|+|++.|+.+++.+.
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998753
No 171
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-45 Score=382.91 Aligned_cols=217 Identities=30% Similarity=0.483 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+|+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999753 24699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCC--CCcccHHHHHhcCCCC-CCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 538 GLVSQEPV--LFNDTVRVNIAYGKEG-NATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 538 ~~V~Qe~~--LF~gTIreNI~~g~~~-~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
+||+|+|. ++..|+++|+.++... ..+. +++.++++..++.++. .....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999984 5567899999886211 1222 3455555655554433 234578999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..+..||+|++|++|+|++.|+++++.+.
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 7899999999999988999999999999999999998763
No 172
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-45 Score=374.78 Aligned_cols=207 Identities=32% Similarity=0.483 Sum_probs=175.3
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
|+++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997421 1479999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFN-DTVRVNIAYGKE-GNA----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~-gTIreNI~~g~~-~~~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
+||+|++.+|. .|++|||.++.. ... .++++.++++..++.+++. ....+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHH
Confidence 99999999998 699999987621 111 1234555555555544443 344689999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEe--CCEEEEecChh
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVK--NGVIAEKGKHE 681 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~--~G~Ive~Gth~ 681 (703)
||+++|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|+ +|+|+++++-|
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998874 3789999999999775 599999999 79999988743
No 173
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.6e-45 Score=360.35 Aligned_cols=178 Identities=38% Similarity=0.666 Sum_probs=167.7
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++|+|+++ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..+ ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5799999999753 24699999999999999999999999999999999999999999999999998776 667899999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
||+|++.+|+.|++||| ..+||||||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~tv~~~i----------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL----------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEccCCeeecccHHHhh----------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 57899999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEec
Q 005314 619 ILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~G 678 (703)
+|||||||++||+.+.+.+.+.|.++.+++|+|++||++..+..||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999887789999999999999999999999999999865
No 174
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-45 Score=382.76 Aligned_cols=214 Identities=29% Similarity=0.523 Sum_probs=185.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC-HHHHhcce
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ-LKWLRQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~-~~~lR~~i 537 (703)
|+++||+|+|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 346999999999999999999999999999999999999999999999999998775 46788999
Q ss_pred EEEccCCC--CCcccHHHHHhcCCCC-CCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 538 GLVSQEPV--LFNDTVRVNIAYGKEG-NATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 538 ~~V~Qe~~--LF~gTIreNI~~g~~~-~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
+||+|+|. +|+.|++|||.++... ..+. +++.++++..++.++ .......||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHH
Confidence 99999985 6788999999887311 1232 234444555444433 3445578999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhc
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||+++|+||||||||++||+.+...+.+.|.++. +++|+|++||++..+..||+|++|++|++++.|+.+++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999998865 4899999999999999999999999999999999998865
No 175
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-45 Score=389.45 Aligned_cols=227 Identities=30% Similarity=0.422 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCC-------CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH
Q 005314 458 DIEFQHITFKYPARP-------DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~-------~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~ 530 (703)
-|+++||++.|+.+. ..++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997421 2479999999999999999999999999999999999999999999999999988875
Q ss_pred ---HHHhcceEEEccCCC--CCc-ccHHHHHhcCC--CCCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCC
Q 005314 531 ---KWLRQQMGLVSQEPV--LFN-DTVRVNIAYGK--EGNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQ 598 (703)
Q Consensus 531 ---~~lR~~i~~V~Qe~~--LF~-gTIreNI~~g~--~~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 598 (703)
+.+|++|+||+|+|. |+. -|+.+|+.... ....+ .+++.++++..++. |.+++ ....+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~----~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR------PEHYD----RYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCC------hHHhc----CCCcc
Confidence 357889999999994 554 49999986421 00112 23455555555552 12333 34578
Q ss_pred CChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEE
Q 005314 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIA 675 (703)
Q Consensus 599 LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Iv 675 (703)
||||||||++|||||+.+|+|||+||||++||..+.+.|.+.|.++.+ +.|+|+|||+++.+. .||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 789999999999997 49999999999999
Q ss_pred EecChhHHhccCCcHHHHH
Q 005314 676 EKGKHETLVHVKDGIYASL 694 (703)
Q Consensus 676 e~Gth~eLl~~~~g~Y~~l 694 (703)
|.|+.+++++.+...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999997655567653
No 176
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.4e-45 Score=371.24 Aligned_cols=202 Identities=35% Similarity=0.547 Sum_probs=176.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH---HHhc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK---WLRQ 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~---~lR~ 535 (703)
|+++|++++|+. +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999962 34799999999999999999999999999999999999999999999999999887643 4788
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCC-----CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 536 QMGLVSQEPVLFN-DTVRVNIAYGKE-----GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 536 ~i~~V~Qe~~LF~-gTIreNI~~g~~-----~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
+++|++|++.+|. .|++||+.++.. +...++++.++++..++.+++...| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999996 699999987521 1122356677777777766554443 5899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCE
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGV 673 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~ 673 (703)
||||+++|++|||||||++||+.+...+.+.|.++. +++|+|+|||++..+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998865 48999999999999875 99999999985
No 177
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-45 Score=398.29 Aligned_cols=207 Identities=36% Similarity=0.520 Sum_probs=178.6
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH----hcceEEEccCCCCCc-c
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL----RQQMGLVSQEPVLFN-D 549 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l----R~~i~~V~Qe~~LF~-g 549 (703)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++...+ |++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876554 468999999999996 5
Q ss_pred cHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeec
Q 005314 550 TVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDE 624 (703)
Q Consensus 550 TIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDE 624 (703)
|++|||.++.. ...+ ++++.++++..++.++....| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998621 0111 245666777777666555443 5899999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhccCCcHHH
Q 005314 625 ATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHVKDGIYA 692 (703)
Q Consensus 625 aTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~ 692 (703)
|||+||+.+.+.+++.|.++. .++|+|+|||+++.+. .||+|++|++|+|++.|++++++..+...|.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 999999999999999998874 4789999999999874 5999999999999999999999875444443
No 178
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7e-45 Score=374.85 Aligned_cols=222 Identities=23% Similarity=0.426 Sum_probs=186.6
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcce
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~i 537 (703)
|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||+++...+... .|+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999973 46999999999999999999999999999999999999999999999999998877664 45679
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCCH-HH---HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEGNATE-AE---VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~~~t~-~e---i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
+|++|++.+|.+ |++||+.++...+... .. .........+.+++..+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999987 9999998862211000 00 00001111234444444 55555566778999999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
++.+|++|||||||++||+++.+.+.+.|.++.+++|+|+|||++..+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998778999999999999865 99999999999999999999874
No 179
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=380.01 Aligned_cols=219 Identities=25% Similarity=0.410 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCCCC-HH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQKLQ-LK 531 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~~~-~~ 531 (703)
.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+++ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999973 4799999999999999999999999999999999999986 7999999999998764 45
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCC--CCCCHHHHHH----HHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 532 WLRQQMGLVSQEPVLFNDTVRVNIAYGKE--GNATEAEVLA----AAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~LF~gTIreNI~~g~~--~~~t~~ei~~----A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
.+|++|+||+|++.+|+.|++|||.++.. ...+++++.+ +++..++ ++.+++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-------WDAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC-------CchhhhHhhCCcccCCHHHHH
Confidence 77899999999999999999999998621 1134444432 2233332 223334566778899999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHh
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
|++|||||+.+|+||||||||++||+.+.+.+.+.|.++.+++|+|+|||++..+. .||+|++|++|+|++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877789999999999876 49999999999999999999998
Q ss_pred cc
Q 005314 685 HV 686 (703)
Q Consensus 685 ~~ 686 (703)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 64
No 180
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3e-45 Score=370.50 Aligned_cols=203 Identities=33% Similarity=0.526 Sum_probs=174.0
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH---HHHhc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL---KWLRQ 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~---~~lR~ 535 (703)
|+++||+++|+++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 5789999999743 469999999999999999999999999999999999999999999999999987764 35788
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 536 QMGLVSQEPVLFN-DTVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 536 ~i~~V~Qe~~LF~-gTIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
.++||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.++... ...+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHH
Confidence 9999999999998 499999987621 1112 2345556666665544333 345899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEE
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVI 674 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~I 674 (703)
|||++++|+||||||||++||+++.+.+.+.|.++. +++|+|+|||++..+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 57999999999999875 999999999975
No 181
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.3e-45 Score=370.58 Aligned_cols=202 Identities=38% Similarity=0.643 Sum_probs=172.8
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEE
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~ 539 (703)
+++||+++|+++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|++|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999742 2579999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EccCC--CCCcccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 540 VSQEP--VLFNDTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 540 V~Qe~--~LF~gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
++|++ .++..|++||+.++.. ...+. +++.++++..++.+ .+.....+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-----------LRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHHHHHHHHHHH
Confidence 99998 4678899999987521 11222 23444444444433 3344567899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCE
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRD-ADLIAVVKNGV 673 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~-aD~I~vl~~G~ 673 (703)
|+++|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999988754 7899999999999977 99999999985
No 182
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-45 Score=381.75 Aligned_cols=220 Identities=31% Similarity=0.549 Sum_probs=184.8
Q ss_pred EEEEEEEEEcCCCC--CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC----CHHH
Q 005314 459 IEFQHITFKYPARP--DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL----QLKW 532 (703)
Q Consensus 459 I~~~~vsF~Y~~~~--~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~----~~~~ 532 (703)
|+++||+|+|+++. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 14699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcceEEEccCC--CCCcccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChhHHHHHH
Q 005314 533 LRQQMGLVSQEP--VLFNDTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 533 lR~~i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQkQRia 608 (703)
+|+.|+||+|++ .+|+.|++|||.++.. ...+.++..+. +.++++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 889999999998 6889999999987621 12333333222 12223332 443 2345567789999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||||+++|++|||||||++||+++.+.+.+.|.++. .++|+|+|||++..+. .||+|++|++|++++.|+.+++++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998875 3789999999999885 599999999999999999999875
No 183
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-45 Score=396.00 Aligned_cols=219 Identities=33% Similarity=0.523 Sum_probs=187.9
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
..|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.++.. .|++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 469999999999999999999999999999999999999999999999999987664 5789
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
||||+|++.||.. |++|||.|+.. ...+. +++.++++..++.++..+ ...+||||||||+|||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-----------KPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999999965 99999999732 12222 345555666665544433 3458999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccC
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVK 687 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~ 687 (703)
|||+++|++||||||||+||..+...+.+.|.++. .+.|+|+|||++..+ ..||+|++|++|+|++.|+.+++..++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998887764 378999999999986 569999999999999999999998765
Q ss_pred CcHH
Q 005314 688 DGIY 691 (703)
Q Consensus 688 ~g~Y 691 (703)
...|
T Consensus 242 ~~~~ 245 (377)
T PRK11607 242 TTRY 245 (377)
T ss_pred ccHH
Confidence 5444
No 184
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-45 Score=375.14 Aligned_cols=218 Identities=24% Similarity=0.423 Sum_probs=187.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~ 536 (703)
.|+++||+|+|++ .++|+|+||+|++|+++||+|+||||||||+++|.|+++|++|+|.++|.++...+... +|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999973 46999999999999999999999999999999999999999999999999998887644 6789
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCC--CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEG--NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~--~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
++||+|++.+|.. |++||+.++... ..+.++. ...++++++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999999885 999999876211 1222221 12344566665 566666777889999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhc
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
+++|++|||||||++||+.+.+.+.+.+.++. +++|+|++||++..+ +.||+|++|++|++++.|+++++++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998765 489999999999766 5699999999999999999999875
No 185
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.9e-45 Score=372.58 Aligned_cols=210 Identities=27% Similarity=0.468 Sum_probs=182.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999973 4699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCCCCCcccHHHHHhcCCC--CC-CCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChhHHHHHHHHHHh
Q 005314 538 GLVSQEPVLFNDTVRVNIAYGKE--GN-ATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 538 ~~V~Qe~~LF~gTIreNI~~g~~--~~-~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQkQRiaIARAl 613 (703)
+||+|++.+|..|++||+.++.. .. ..++++.+ +++.+ |+. +.......+||||||||++|||||
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLD---------DLERF--ALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHH---------HHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999987411 11 11222333 34443 342 345667789999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEe-CCEEEEecChh
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVK-NGVIAEKGKHE 681 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~-~G~Ive~Gth~ 681 (703)
+++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..++.||+|++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999998753 789999999999999999999994 77788899996
No 186
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=381.70 Aligned_cols=220 Identities=29% Similarity=0.479 Sum_probs=188.6
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCC--CC
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQK--LQ 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~--~~ 529 (703)
..|+++||+|+|+. .++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35899999999973 469999999999999999999999999999999999997 689999999999864 45
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCC----CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKE----GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~----~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
...+|++++||+|++.+|..|++|||.++.. +...++++.++++..++..++. .....+..+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 6678999999999999999999999987521 1112345666666666543332 2345667899999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEE-EEeCCEEEEecChhHH
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIA-VVKNGVIAEKGKHETL 683 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~-vl~~G~Ive~Gth~eL 683 (703)
|++|||||+++|+||||||||++||+++.+.+.+.|.++.+++|+|+|||++..+.. ||+|+ +|++|+|++.|+.+++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999865 99975 5799999999999998
Q ss_pred hcc
Q 005314 684 VHV 686 (703)
Q Consensus 684 l~~ 686 (703)
.+.
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 754
No 187
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-45 Score=378.38 Aligned_cols=225 Identities=28% Similarity=0.428 Sum_probs=191.7
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCC--CC
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQK--LQ 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~--~~ 529 (703)
+.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999973 4699999999999999999999999999999999999986 48999999999854 45
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCC-----CCCC-HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-----GNAT-EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-----~~~t-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
...+|++|+||+|++.+|+.|++|||.++.. ++.+ ++.+.++++.+++.+++.. ........|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 6778999999999999999999999987521 1111 2345677777777655432 2345677999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEe-----CCEEEEe
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVK-----NGVIAEK 677 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~-----~G~Ive~ 677 (703)
|||++|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||++..+.. ||+|++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988778999999999999865 99999998 5999999
Q ss_pred cChhHHhccCCcHH
Q 005314 678 GKHETLVHVKDGIY 691 (703)
Q Consensus 678 Gth~eLl~~~~g~Y 691 (703)
|+.+++.+.+...|
T Consensus 236 ~~~~~~~~~~~~~~ 249 (259)
T PRK14260 236 GVTTQIFSNPLDSR 249 (259)
T ss_pred CCHHHHhcCCCChH
Confidence 99999876433333
No 188
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=382.95 Aligned_cols=223 Identities=26% Similarity=0.461 Sum_probs=183.9
Q ss_pred CCcEEEEEEEEEcCCCC--CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC----C-
Q 005314 456 KGDIEFQHITFKYPARP--DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK----L- 528 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~--~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~----~- 528 (703)
.+.|+++||+++|++++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999997532 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHHhcceEEEccCC--CCCcccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChhHH
Q 005314 529 QLKWLRQQMGLVSQEP--VLFNDTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGGQK 604 (703)
Q Consensus 529 ~~~~lR~~i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQk 604 (703)
+...+|++|+||+|+| .+|..|++|||.++.. ...+.++..+.+ .+.++.+ |+. ........+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 4567889999999998 5788899999998631 112333332221 1222222 221 223456789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChh
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~ 681 (703)
||++|||||+.+|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999988753 789999999999874 59999999999999999998
Q ss_pred HHhc
Q 005314 682 TLVH 685 (703)
Q Consensus 682 eLl~ 685 (703)
++.+
T Consensus 237 ~~~~ 240 (289)
T PRK13645 237 EIFS 240 (289)
T ss_pred HHhc
Confidence 8865
No 189
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-45 Score=374.08 Aligned_cols=212 Identities=36% Similarity=0.522 Sum_probs=186.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++|+|++ +++|+|+||+|+||++++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 579999999974 469999999999999999999999999999999999999999999999999987664 368999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC-----CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKE-----GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~-----~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
||+|++.+|.+ |++||+.++.. +...++++.++++..++++++...| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999987521 1112345667777777766665544 6899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
++++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998764 7999999999999855 999999999999999999999764
No 190
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=375.72 Aligned_cols=219 Identities=32% Similarity=0.433 Sum_probs=188.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCCC--CH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQKL--QL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~~--~~ 530 (703)
.|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999973 4699999999999999999999999999999999999986 799999999998653 45
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCC-CC-C----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-NA-T----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~~-t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|+.++||+|++.+|..|++||+.++... .. + ++++.++++.+++.+.+. .........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 6778999999999999999999999886211 11 1 234556666666543332 234456789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++||||++++|+|||||||||+||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999998
Q ss_pred hcc
Q 005314 684 VHV 686 (703)
Q Consensus 684 l~~ 686 (703)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 753
No 191
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=379.86 Aligned_cols=214 Identities=30% Similarity=0.443 Sum_probs=182.9
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC--CCCHHHHhcc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ--KLQLKWLRQQ 536 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~--~~~~~~lR~~ 536 (703)
|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||+++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999973 46999999999999999999999999999999999999999999999999985 3445678899
Q ss_pred eEEEccCCC--CCcccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 537 MGLVSQEPV--LFNDTVRVNIAYGKE-GNATEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 537 i~~V~Qe~~--LF~gTIreNI~~g~~-~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
|+||+|++. +|..|+.+|+.++.. ...+.+ ++.++++..++.++. .....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 999999985 678899999987521 112222 344555555554432 23457899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
||||+.+|+||||||||++||+.+...+.+.|.++. +++|+|+|||++..+. .||+|++|++|++++.|+.++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998875 4789999999999985 5999999999999999999998753
No 192
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6e-45 Score=394.39 Aligned_cols=211 Identities=29% Similarity=0.404 Sum_probs=180.1
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCe----eCCCCCHHHH---h-cceEEEccCCC
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGV----EIQKLQLKWL---R-QQMGLVSQEPV 545 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~----di~~~~~~~l---R-~~i~~V~Qe~~ 545 (703)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++..++.+.+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 46899999999999999999999999999999999999999999999996 6777766554 3 68999999999
Q ss_pred CCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCE
Q 005314 546 LFN-DTVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKI 619 (703)
Q Consensus 546 LF~-gTIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~I 619 (703)
+|. .|++|||.|+.. ...+ ++++.++++..++.++... ...+||||||||++|||||+.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999998731 0122 2345666777766555433 3457999999999999999999999
Q ss_pred EEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHH
Q 005314 620 LLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLV 695 (703)
Q Consensus 620 LlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~ 695 (703)
||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|++++++.++.+.|.+.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~ 264 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHHH
Confidence 999999999999999999999988754 79999999999987 66999999999999999999999876556665544
No 193
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-45 Score=366.33 Aligned_cols=202 Identities=29% Similarity=0.483 Sum_probs=176.7
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999742 2 39999999999999999999999999999999999999999999999987654 468899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKEGN-----ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~~~-----~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
|++|++.+|.+ |++||+.++.... .+++++.++++..++.++....| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998763211 23456777888888776665544 4899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCEEEEec
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKG 678 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~G 678 (703)
++++|++|||||||++||+++...+.+.|.++. .++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 37899999999999865 9999999999999865
No 194
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=9.9e-45 Score=370.37 Aligned_cols=209 Identities=29% Similarity=0.412 Sum_probs=178.8
Q ss_pred cEEEEEEEEEcCCCCC-cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH---H
Q 005314 458 DIEFQHITFKYPARPD-VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW---L 533 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~-~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~---l 533 (703)
.|+++||+++|++... .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974311 36999999999999999999999999999999999999999999999999998887643 3
Q ss_pred -hcceEEEccCCCCCcc-cHHHHHhcCCC-CCC----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 534 -RQQMGLVSQEPVLFND-TVRVNIAYGKE-GNA----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 534 -R~~i~~V~Qe~~LF~g-TIreNI~~g~~-~~~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
++.++|++|++.+|.. |++|||.++.. ... .++++.++++..++.+++... ..+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHH
Confidence 3689999999999885 99999987411 111 234566666666665554443 35899999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCEEEEe
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEK 677 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~ 677 (703)
++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|+|+|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 7899999999999999999999999999874
No 195
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.3e-44 Score=369.39 Aligned_cols=213 Identities=35% Similarity=0.521 Sum_probs=176.9
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH---HHHh
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL---KWLR 534 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~---~~lR 534 (703)
|+++||+|+|+++. +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999997431 1369999999999999999999999999999999999999999999999999988774 6788
Q ss_pred cceEEEccCC--CCC-cccHHHHHhcCCC---CCCCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChhHHHHH
Q 005314 535 QQMGLVSQEP--VLF-NDTVRVNIAYGKE---GNATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 535 ~~i~~V~Qe~--~LF-~gTIreNI~~g~~---~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQkQRi 607 (703)
++++|++|++ .++ ..|++|||.++.. ....+++..++ +++++..+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH-----HHHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 5799999986421 11111121111 12334443 443 345667789999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEec
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKG 678 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~G 678 (703)
+||||++.+|+||||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998764 799999999999987 69999999999999865
No 196
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=375.03 Aligned_cols=226 Identities=31% Similarity=0.500 Sum_probs=193.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~--~~~ 530 (703)
.|+++||++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999973 469999999999999999999999999999999999875 489999999999875 346
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC-CCC-C----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-GNA-T----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~~~-t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|++++||||++.+|..|++|||.++.. ... + ++++.++++.+++.+++..+ +...+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 678999999999999999999999987621 111 1 23466677777776665432 3456779999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++||||++++|+||||||||++||+.+.+.+.+.|.++.+++|+|+|||++..+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 899999999999999999999
Q ss_pred hccCCcHHHH
Q 005314 684 VHVKDGIYAS 693 (703)
Q Consensus 684 l~~~~g~Y~~ 693 (703)
...+.+.|.+
T Consensus 233 ~~~~~~~~~~ 242 (250)
T PRK14266 233 FINPKDKRTE 242 (250)
T ss_pred HhCCCChHHH
Confidence 7654555543
No 197
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=377.59 Aligned_cols=226 Identities=28% Similarity=0.414 Sum_probs=193.1
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCC----
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQ---- 526 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~---- 526 (703)
.+.|+++||+|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 467999999999973 4699999999999999999999999999999999999985 7999999998874
Q ss_pred CCCHHHHhcceEEEccCCCCCcccHHHHHhcCCC-C-----CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 527 KLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-G-----NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 527 ~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~-----~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
..+..++|+.|+|++|++.+|.+|++|||.++.. . ...++++.++++.+++.+ ++.+.......+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 3345678999999999999999999999987621 0 112355666666666543 33345566788999
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecC
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gt 679 (703)
||||||++||||++++|++|||||||++||+++.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|+|++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877899999999999985 599999999999999999
Q ss_pred hhHHhccCCcHH
Q 005314 680 HETLVHVKDGIY 691 (703)
Q Consensus 680 h~eLl~~~~g~Y 691 (703)
++++...+...|
T Consensus 244 ~~~~~~~~~~~~ 255 (265)
T PRK14252 244 TDTIFIKPKNKQ 255 (265)
T ss_pred HHHHHhCCCCHH
Confidence 999875333334
No 198
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=9.5e-45 Score=377.00 Aligned_cols=213 Identities=28% Similarity=0.431 Sum_probs=185.1
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999973 46999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEccCCC-CCcccHHHHHhcCCCCC---------CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 539 LVSQEPV-LFNDTVRVNIAYGKEGN---------ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 539 ~V~Qe~~-LF~gTIreNI~~g~~~~---------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
|++|++. .+..|++||+.++.... ..++++.++++..++.++ ......+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHH
Confidence 9999985 46689999998862110 112244555555554333 33456789999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
||||++.+|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+ +.||+|++|++|+|++.|+.+++.+
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999999998753 78999999999999 4699999999999999999999865
No 199
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-45 Score=377.34 Aligned_cols=219 Identities=30% Similarity=0.440 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~--~~~ 530 (703)
.|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|.|+++| ++|+|.+||+++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3699999999999999999999999999999999999974 69999999999853 456
Q ss_pred HHHhcceEEEccCCCCCc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 531 KWLRQQMGLVSQEPVLFN-DTVRVNIAYGKE--GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~-gTIreNI~~g~~--~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
..+|+.++||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+++ .........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence 678999999999999997 599999987521 1111 23445556666654332 233455678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEe------CCEEEE
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVK------NGVIAE 676 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~------~G~Ive 676 (703)
|||++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||++..+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877899999999999875 699999997 899999
Q ss_pred ecChhHHhcc
Q 005314 677 KGKHETLVHV 686 (703)
Q Consensus 677 ~Gth~eLl~~ 686 (703)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999764
No 200
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=374.27 Aligned_cols=226 Identities=29% Similarity=0.421 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC-----CCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD-----TGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~-----~G~I~idG~di~~--~~~ 530 (703)
-|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999973 47999999999999999999999999999999999999875 8999999999875 345
Q ss_pred HHHhcceEEEccCCCCCcc-cHHHHHhcCCC-CCC-CHHHHHHH----HHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 531 KWLRQQMGLVSQEPVLFND-TVRVNIAYGKE-GNA-TEAEVLAA----AELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~g-TIreNI~~g~~-~~~-t~~ei~~A----~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
..+|+.|+|++|++.+|.. |++||+.++.. ... .++++.+. ++..++.++ +++.++ ....+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~----~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLK----TPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhc----CCcccCCHHH
Confidence 6788999999999999985 99999987521 111 23333332 223333222 233334 3457899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhH
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~e 682 (703)
|||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999875 99999999999999999999
Q ss_pred HhccCCcHHHH
Q 005314 683 LVHVKDGIYAS 693 (703)
Q Consensus 683 Ll~~~~g~Y~~ 693 (703)
+++.+...|.+
T Consensus 234 ~~~~~~~~~~~ 244 (252)
T PRK14272 234 LFTNPRDERTE 244 (252)
T ss_pred HHhCcCcHHHH
Confidence 98754444544
No 201
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=376.43 Aligned_cols=226 Identities=27% Similarity=0.400 Sum_probs=194.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~--~~~ 530 (703)
-+.+++++++|. +.++|+|+||+|+|||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 8 ~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 478999999996 34799999999999999999999999999999999999987 79999999999864 344
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC----CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKE----GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~----~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
..+|+.|+||+|++.+|..|++|||.++.. .....+++.++++.+++.+.+.. ..++...+|||||+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 577899999999999999999999998731 11123567788888877655533 3456778999999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEe--------CCEEEEe
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVK--------NGVIAEK 677 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~--------~G~Ive~ 677 (703)
++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|+ +|+|++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 9999999999999999999999999999999999999877889999999999875 599999996 8999999
Q ss_pred cChhHHhccCCcHHHH
Q 005314 678 GKHETLVHVKDGIYAS 693 (703)
Q Consensus 678 Gth~eLl~~~~g~Y~~ 693 (703)
|+++++++.+...|..
T Consensus 238 g~~~~~~~~~~~~~~~ 253 (261)
T PRK14263 238 GPTAQIFQNPREQLTS 253 (261)
T ss_pred CCHHHHHhCCCcHHHH
Confidence 9999998643333443
No 202
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=381.75 Aligned_cols=228 Identities=28% Similarity=0.412 Sum_probs=190.0
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCCC--CH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQKL--QL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~~--~~ 530 (703)
.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|+|.+||.++... ..
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999973 369999999999999999999999999999999999865 4999999999998653 33
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCC-CC-C----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-NA-T----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~~-t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|++++||+|++.+|..|++|||.++... .. + ++++.++++..++.+++. .........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHHH
Confidence 4678999999999999999999999986210 11 1 233455555555432221 223456778999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++|||||+.+|++|||||||++||+++...+.+.|.++.+++|+|+|||++..+. .||+|++|++|+|++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999985 4999999999999999999999
Q ss_pred hccCCcHHHHHH
Q 005314 684 VHVKDGIYASLV 695 (703)
Q Consensus 684 l~~~~g~Y~~l~ 695 (703)
.+.+...|.+.+
T Consensus 269 ~~~~~~~~~~~~ 280 (286)
T PRK14275 269 FTNPKDRMTEDY 280 (286)
T ss_pred HhCCCcHHHHHH
Confidence 875444454433
No 203
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=375.63 Aligned_cols=220 Identities=26% Similarity=0.422 Sum_probs=187.0
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH-hcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL-RQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l-R~~ 536 (703)
.|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999973 479999999999999999999999999999999999999999999999999988876554 556
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCCC--------------CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEGN--------------ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~~--------------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
++||+|++.+|.. |++|||.++.... ..+++ .+ ....+.++++.+ |++........+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SE--ALDRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hH--HHHHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999986 9999999862100 00000 01 111234455554 666667778889999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEec
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKG 678 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~G 678 (703)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||++..+.. ||+|++|++|++++.|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999988753 7899999999999855 9999999999999999
Q ss_pred ChhHHhc
Q 005314 679 KHETLVH 685 (703)
Q Consensus 679 th~eLl~ 685 (703)
+.+++..
T Consensus 237 ~~~~~~~ 243 (255)
T PRK11300 237 TPEEIRN 243 (255)
T ss_pred CHHHHhh
Confidence 9999865
No 204
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.4e-45 Score=369.87 Aligned_cols=199 Identities=30% Similarity=0.501 Sum_probs=170.0
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEE
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~ 539 (703)
+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 46899999974 46999999999999999999999999999999999999999999999998774 47889999
Q ss_pred EccCCCC---CcccHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 540 VSQEPVL---FNDTVRVNIAYGKEG---------NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 540 V~Qe~~L---F~gTIreNI~~g~~~---------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
|+|++.+ |+.|++|||.++... ...++++.++++..++.++.. ....+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHH
Confidence 9999987 668999999886321 012234566666666655443 34568999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEec
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKG 678 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~G 678 (703)
+|||||+.+|++|||||||++||+++.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998865 67899999999999865 9999999986 66655
No 205
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-45 Score=376.05 Aligned_cols=205 Identities=31% Similarity=0.444 Sum_probs=179.5
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
..|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++. .+|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999973 46999999999999999999999999999999999999999999999998763 56789
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 537 MGLVSQEPVLFN-DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 537 i~~V~Qe~~LF~-gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
++||+|++.+|. .|++||+.++.. ...++++.++++..++.++ ......+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 699999998732 2234566666666666543 344567999999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChh
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~ 681 (703)
+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999998864 3789999999999875 59999999999999998865
No 206
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=8.8e-45 Score=385.77 Aligned_cols=214 Identities=29% Similarity=0.463 Sum_probs=183.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999973 57999999999999999999999999999999999999999999999999997754 4578999
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC-CCCCHHHH----HHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFN-DTVRVNIAYGKE-GNATEAEV----LAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~-gTIreNI~~g~~-~~~t~~ei----~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||||++.+|. .|++||+.|... ...+..+. .++++.. .|++..++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA-------KLENKADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999986 699999986321 12233332 2333332 3444556665 479999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
||+.+|++|||||||++||+.+.+.+.+.|.++. +|+|+|++||.++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 47899999999999865 999999999999999999999753
No 207
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.7e-44 Score=377.18 Aligned_cols=230 Identities=21% Similarity=0.396 Sum_probs=191.1
Q ss_pred cEEEEEEEEEcCCC------CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH
Q 005314 458 DIEFQHITFKYPAR------PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK 531 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~------~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~ 531 (703)
.|+++||+++|+.+ .+.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 124799999999999999999999999999999999999999999999999999766666
Q ss_pred HHhcceEEEccCCC--CCc-ccHHHHHhcCCC--CCC----CHHHHHHHHHHhcHH-HHHHHhhccccchhcCCCCCCCh
Q 005314 532 WLRQQMGLVSQEPV--LFN-DTVRVNIAYGKE--GNA----TEAEVLAAAELANAH-QFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~--LF~-gTIreNI~~g~~--~~~----t~~ei~~A~~~a~l~-~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
.+++.++||+|++. ++. -|+.+|+.++.. ... .++++.++++..++. ++. + ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------S----YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------h----cCchhcCH
Confidence 77789999999985 444 389999875311 011 124566666666662 222 1 23468999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEec
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKG 678 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~G 678 (703)
|||||++||||++++|+||||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999976 9999999999999999
Q ss_pred ChhHHhccC-CcHHHHHHHhh
Q 005314 679 KHETLVHVK-DGIYASLVALQ 698 (703)
Q Consensus 679 th~eLl~~~-~g~Y~~l~~~q 698 (703)
+++++.+.+ ...|++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 999998643 35566787654
No 208
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-44 Score=374.37 Aligned_cols=213 Identities=29% Similarity=0.462 Sum_probs=186.0
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999973 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCCC-CcccHHHHHhcCCCCC-C----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVL-FNDTVRVNIAYGKEGN-A----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~L-F~gTIreNI~~g~~~~-~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
|++|++.+ +..|++||+.++.... . .++++.++++..++.+ .......+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHH
Confidence 99999987 6789999998863211 1 1234555555555543 3334567999999999999999
Q ss_pred hc------cCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 613 MV------KAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 613 ll------k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
|+ ++|++|||||||++||+.+...+.+.|.++. +++|+|+|||++..+. .||+|++|++|+|++.|+.+++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998875 4789999999999886 6999999999999999999998
Q ss_pred hc
Q 005314 684 VH 685 (703)
Q Consensus 684 l~ 685 (703)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
No 209
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-44 Score=368.44 Aligned_cols=210 Identities=33% Similarity=0.484 Sum_probs=184.6
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+|+|+. .+ .|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..... .++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999973 22 39999999999999999999999999999999999999999999999987654 357899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKEGN-----ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~~~-----~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
||+|++.+|.+ |++|||.++.... ..++++.++++..++.+++...| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998752111 12456788888888877766655 4899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
++++|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||++..+.. ||+|++|++|++++.|++++++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999988753 7899999999999865 999999999999999999999864
No 210
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.6e-44 Score=370.98 Aligned_cols=212 Identities=37% Similarity=0.555 Sum_probs=181.6
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++|+|+. +++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 579999999973 469999999999999999999999999999999999999999999999999976653 478999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKEG-NAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~~-~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
||||++.+|.+ |++||+.++... ..+ ++++.++++..++.++. .....+|||||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999886311 111 23344444444443333 33446899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
++++|+++||||||++||+++++.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998754 7999999999998755 999999999999999999999753
No 211
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-45 Score=368.66 Aligned_cols=216 Identities=34% Similarity=0.513 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCe---eCCCCCHHHHh
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGV---EIQKLQLKWLR 534 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~---di~~~~~~~lR 534 (703)
.|.++|++..|+. .++++||||.|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4788999999974 46899999999999999999999999999999999999999999999999 666633 334
Q ss_pred cceEEEccCCCCC-cccHHHHHhcCCCC---C----CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 535 QQMGLVSQEPVLF-NDTVRVNIAYGKEG---N----ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 535 ~~i~~V~Qe~~LF-~gTIreNI~~g~~~---~----~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
++||+|+|+..|| +.||++||+||.+- . ..+.++.+-++.+++..+-++ ...|||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-----------yP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-----------YPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-----------CchhcChHHHHH
Confidence 7999999999987 67999999999411 1 223456666777777655444 458999999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHH
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eL 683 (703)
+||||||.-.|++||||||.+|||++-.+.+.+-|.++.. +.|+++|||+...+ +.||||+||++|+|.+.|+.+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999988877543 78999999999865 67999999999999999999999
Q ss_pred hccCCc
Q 005314 684 VHVKDG 689 (703)
Q Consensus 684 l~~~~g 689 (703)
...++.
T Consensus 226 ~~~P~s 231 (345)
T COG1118 226 YDHPAS 231 (345)
T ss_pred hcCCCc
Confidence 876544
No 212
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.3e-44 Score=368.06 Aligned_cols=205 Identities=32% Similarity=0.479 Sum_probs=174.9
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH---HHhc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK---WLRQ 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~---~lR~ 535 (703)
|+++||+++|++ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999953 34699999999999999999999999999999999999999999999999999877644 4788
Q ss_pred ceEEEccCCCC-CcccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 536 QMGLVSQEPVL-FNDTVRVNIAYGKE-GNATEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 536 ~i~~V~Qe~~L-F~gTIreNI~~g~~-~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
.++||+|++.+ ++.|++|||.++.. ...+++ ++.++++..++.+++. ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 99999999987 56799999988621 122333 3445555555544333 3457899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEE
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAE 676 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive 676 (703)
|||++++|++|||||||++||+++.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999998874 47899999999999876 89999999999863
No 213
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-44 Score=378.70 Aligned_cols=221 Identities=29% Similarity=0.537 Sum_probs=184.7
Q ss_pred cEEEEEEEEEcCCCC--CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC----CHH
Q 005314 458 DIEFQHITFKYPARP--DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL----QLK 531 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~--~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~----~~~ 531 (703)
.|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997321 14699999999999999999999999999999999999999999999999998653 356
Q ss_pred HHhcceEEEccCC--CCCcccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCChhHHHHH
Q 005314 532 WLRQQMGLVSQEP--VLFNDTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLSGGQKQRV 607 (703)
Q Consensus 532 ~lR~~i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQkQRi 607 (703)
.+|+.|+||+|+| .+|..|++|||.++.. ...+.++..+. +.+++..+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 7788999999998 6888999999987621 12233332211 22334443 4542 34556779999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhc
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
+|||||+.+|++|||||||++||+++.+.+.+.|.++. +++|+|++||++..+. .||+|++|++|+|++.|+.+++.+
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 4789999999999875 699999999999999999998865
No 214
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=375.21 Aligned_cols=229 Identities=27% Similarity=0.425 Sum_probs=192.4
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC------eeCCCCCH
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG------VEIQKLQL 530 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG------~di~~~~~ 530 (703)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +++.+++.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 35999999999974 4699999999999999999999999999999999999999996666654 67777777
Q ss_pred HHHhcceEEEccCCCCCcc-cHHHHHhcCCCC-CC-CHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 531 KWLRQQMGLVSQEPVLFND-TVRVNIAYGKEG-NA-TEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~g-TIreNI~~g~~~-~~-t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
..+|++++|++|++.+|.+ |++|||.++... .. +++ ++.++++..++++++. .........|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHH
Confidence 8899999999999999976 999999976211 11 222 2445555555543331 22345677899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhH
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~e 682 (703)
|||++||||++++|++|||||||++||..+++.+.+.|.++.+++|+|+|||++..+ +.||++++|++|++++.|++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999999887789999999999998 5699999999999999999999
Q ss_pred HhccCCcHHHHHH
Q 005314 683 LVHVKDGIYASLV 695 (703)
Q Consensus 683 Ll~~~~g~Y~~l~ 695 (703)
+.+.+...|.+.+
T Consensus 239 ~~~~~~~~~~~~~ 251 (257)
T PRK14246 239 IFTSPKNELTEKY 251 (257)
T ss_pred HHhCCCcHHHHHH
Confidence 9875455566554
No 215
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-44 Score=379.00 Aligned_cols=214 Identities=30% Similarity=0.486 Sum_probs=183.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC--CCHHHHhcc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK--LQLKWLRQQ 536 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~--~~~~~lR~~ 536 (703)
|+++||+|+|++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999973 2469999999999999999999999999999999999999999999999999852 334568899
Q ss_pred eEEEccCC--CCCcccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 537 MGLVSQEP--VLFNDTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 537 i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
|+||+|++ .+|..|++|||.++.. ...+. +++.++++..++.++. .....+|||||+||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 99999998 5789999999988621 11222 3355555555554332 23356899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||++.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||++..+. .||+|++|++|++++.|+.+++++
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999875 4799999999999986 599999999999999999999875
No 216
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.7e-44 Score=382.29 Aligned_cols=218 Identities=28% Similarity=0.431 Sum_probs=181.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|++|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999973 4699999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 538 GLVSQEPVLFN-DTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 538 ~~V~Qe~~LF~-gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
|||+|++.+|. .|++||+.+... ...+..+..+.++. +.+. ..|++.+++. ..+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~l~~~~~~~----~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADVR----VALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-CCChhHhcCc----hhhCCHHHHHHHHHHHHHhc
Confidence 99999999985 699999975311 12333333222211 1111 1233334444 45799999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 4789999999999986 5999999999999999999998753
No 217
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=376.53 Aligned_cols=215 Identities=28% Similarity=0.428 Sum_probs=188.4
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
..|+++||+++|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 469999999999999999999999999999999999999999999999999998888888899
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 537 MGLVSQEPVLFN-DTVRVNIAYGKEG---------NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 537 i~~V~Qe~~LF~-gTIreNI~~g~~~---------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
|+||+|++.+|. .|++||+.++... +..++++.++++..++.++. .....+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----------DQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCChHHHHH
Confidence 999999998875 6999999876211 11123456666666665443 34567999999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
++||||++++|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||++..+. .||+|++|++|+|++.|+.+++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 789999999999775 5999999999999999999998
Q ss_pred hc
Q 005314 684 VH 685 (703)
Q Consensus 684 l~ 685 (703)
+.
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 75
No 218
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-44 Score=374.88 Aligned_cols=223 Identities=29% Similarity=0.465 Sum_probs=190.6
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC-----CCeEEECCeeCCC--CC
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD-----TGHITLDGVEIQK--LQ 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~-----~G~I~idG~di~~--~~ 529 (703)
+.|+++||+|+|++ ..+|+|+||+|++|+++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999973 36999999999999999999999999999999999999985 8999999999843 45
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCC-----CCCC-HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-----GNAT-EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-----~~~t-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
...+|+.++|++|++.+|..|++||+.++.. +..+ ++++.++++..++.+++.. ..+....+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678999999999999999999999987521 1111 2345666777766555442 3456778999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeC-----CEEE
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKN-----GVIA 675 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~-----G~Iv 675 (703)
|||++||||++++|++|||||||++||+++.+.+.+.|.++. .++|+|+|||++..+. .||+|++|++ |+|+
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998853 4899999999999885 5999999999 9999
Q ss_pred EecChhHHhccCCc
Q 005314 676 EKGKHETLVHVKDG 689 (703)
Q Consensus 676 e~Gth~eLl~~~~g 689 (703)
+.|+++++.+.+..
T Consensus 236 ~~~~~~~~~~~~~~ 249 (261)
T PRK14258 236 EFGLTKKIFNSPHD 249 (261)
T ss_pred EeCCHHHHHhCCCC
Confidence 99999999865333
No 219
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.5e-44 Score=353.32 Aligned_cols=172 Identities=38% Similarity=0.706 Sum_probs=163.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++++|++. ..++++++||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5799999999753 346999999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
||+|++.+|..|++||+ ||||||||++||||++.+|+
T Consensus 80 ~~~q~~~~~~~tv~~~l-------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 80 YLPQDDELFSGSIAENI-------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred EECCCCccccCcHHHHC-------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 99999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCEE
Q 005314 619 ILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGVI 674 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~I 674 (703)
+|||||||++||+.+.+.+.+.|.++. +++|+|++||++..+..||+|++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999998875 47899999999999999999999999975
No 220
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=372.70 Aligned_cols=222 Identities=29% Similarity=0.424 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC--C---CCCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD--P---DTGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~--p---~~G~I~idG~di~~--~~~ 530 (703)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||+++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999973 469999999999999999999999999999999999975 5 59999999999864 345
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC-CCC-C----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-GNA-T----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~~~-t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
..+|+.++||+|++.+|..|++||+.++.. ... . ++++.++++.+++.+++ .........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 677889999999999999999999987521 111 1 23445555555543322 2334556789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
||++||||++++|++|||||||++||+++.+.+.+.|.++.+++|+|+|||++..+. .||+|++|++|++++.|+-.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999986 5999999999999999998888
Q ss_pred hccCCc
Q 005314 684 VHVKDG 689 (703)
Q Consensus 684 l~~~~g 689 (703)
...+..
T Consensus 235 ~~~~~~ 240 (252)
T PRK14255 235 FLNPKE 240 (252)
T ss_pred hcCCCC
Confidence 754333
No 221
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.4e-44 Score=365.38 Aligned_cols=206 Identities=34% Similarity=0.546 Sum_probs=172.5
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC--CCHHHHhcc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK--LQLKWLRQQ 536 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~--~~~~~lR~~ 536 (703)
|+++||+|+|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999974 469999999999999999999999999999999999999999999999999853 455678899
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 537 MGLVSQEPVLFN-DTVRVNIAYGKE--GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 537 i~~V~Qe~~LF~-gTIreNI~~g~~--~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
|+||+|++.+|. .|++||+.++.. ...+.++..+. +.++++.+ |++..+.....+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999986 699999987621 12222222111 22333333 444444555679999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEE
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVI 674 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~I 674 (703)
+++|++|||||||++||+++.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 47899999999999864 999999999975
No 222
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=8e-44 Score=370.47 Aligned_cols=228 Identities=27% Similarity=0.435 Sum_probs=189.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCee-----CCCCCHHH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVE-----IQKLQLKW 532 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~d-----i~~~~~~~ 532 (703)
-|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.+ +.+++...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 469999999999999999999999999999999999999999999999998 87776544
Q ss_pred ----HhcceEEEccCCC--CC-cccHHHHHhcCC--CCCCCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChh
Q 005314 533 ----LRQQMGLVSQEPV--LF-NDTVRVNIAYGK--EGNATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGG 602 (703)
Q Consensus 533 ----lR~~i~~V~Qe~~--LF-~gTIreNI~~g~--~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGG 602 (703)
+|+.++||+|++. ++ ..|+.+||.+.. ....+..++.+ .++++++.++ ++ +.....+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~--l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVE--IDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcC--CChhHHhCCCccCCHH
Confidence 3668999999984 33 358899986531 00111222221 2456677763 43 4567888999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecC
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gt 679 (703)
||||++|||||+++|+||||||||++||+++.+.+.+.|.++.+ ++|+|+|||++..+. .||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988653 789999999999997 599999999999999999
Q ss_pred hhHHhccCCcHHHHHH
Q 005314 680 HETLVHVKDGIYASLV 695 (703)
Q Consensus 680 h~eLl~~~~g~Y~~l~ 695 (703)
++++...+...|.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 236 TDQVLDDPQHPYTQLL 251 (258)
T ss_pred HHHHhcCCCCHHHHHH
Confidence 9999865444566543
No 223
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-44 Score=385.29 Aligned_cols=229 Identities=22% Similarity=0.340 Sum_probs=189.1
Q ss_pred cEEEEEEEEEcCCC-CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC----CCCCeEEECCeeCCCCCHHH
Q 005314 458 DIEFQHITFKYPAR-PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD----PDTGHITLDGVEIQKLQLKW 532 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~-~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~----p~~G~I~idG~di~~~~~~~ 532 (703)
-|+++||+++|+.+ ...++|+|+||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37999999999742 13569999999999999999999999999999999999986 58999999999999888765
Q ss_pred Hh----cceEEEccCCCC--C-cccHHHHHhcCCC-----C----C--CCHHHHHHHHHHhcHHHHHHHhhccccchhcC
Q 005314 533 LR----QQMGLVSQEPVL--F-NDTVRVNIAYGKE-----G----N--ATEAEVLAAAELANAHQFISSLKQGYDTIVGE 594 (703)
Q Consensus 533 lR----~~i~~V~Qe~~L--F-~gTIreNI~~g~~-----~----~--~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe 594 (703)
++ +.|+||+|+|.. + ..||.+||..... . + ..++++.++++..++.+.- .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 53 579999999973 3 3589999964200 0 0 0123556666666664321 11234
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeC
Q 005314 595 RGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKN 671 (703)
Q Consensus 595 ~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~ 671 (703)
...+||||||||++|||||+.+|+|||||||||+||+.+.+.|.+.|.++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 5679999999999999999999999999999999999999999999998754 7899999999999965 999999999
Q ss_pred CEEEEecChhHHhccCCcHHHHH
Q 005314 672 GVIAEKGKHETLVHVKDGIYASL 694 (703)
Q Consensus 672 G~Ive~Gth~eLl~~~~g~Y~~l 694 (703)
|+|+|.|+.+++.+.+...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999987656678763
No 224
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-44 Score=364.98 Aligned_cols=206 Identities=23% Similarity=0.462 Sum_probs=173.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|+++.|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999973 469999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
|++|++.+|.+ |++||+.++.. ...+..+.. ..+.++++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999875 99999987521 111211111 1233344444 444445566788999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEec
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKG 678 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~G 678 (703)
|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||++..+. .||+|++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998864 4789999999999885 49999999999999865
No 225
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.3e-44 Score=361.88 Aligned_cols=203 Identities=33% Similarity=0.525 Sum_probs=177.9
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
++++||+++|+. +++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 468999999962 468999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKEGN-----ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~~~-----~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
||+|+|.+|.+ |++||+.++.... .+++++.++++..++.++..+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998752111 23456777888888777666655 3899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecC
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gt 679 (703)
++++|+|+||||||++||.++.+.+.+.|.++.+ ++|+|+|||++..+. .||+|++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 789999999999876 499999999999999885
No 226
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=371.71 Aligned_cols=220 Identities=29% Similarity=0.429 Sum_probs=189.9
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCC--CC
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQK--LQ 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~--~~ 529 (703)
..|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999973 4699999999999999999999999999999999999874 69999999999864 34
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCCC-C---CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG-N---ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~-~---~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
...+|+.|+||+|++.+|..|++|||.++... . ..++++.++++.+++.+++.. .......+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHH
Confidence 55788999999999999999999999886211 0 123455667777776554432 344567889999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEe---------CCEEE
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVK---------NGVIA 675 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~---------~G~Iv 675 (703)
|++|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999999999999877899999999999885 599999998 89999
Q ss_pred EecChhHHhcc
Q 005314 676 EKGKHETLVHV 686 (703)
Q Consensus 676 e~Gth~eLl~~ 686 (703)
+.|+.+++...
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 227
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-44 Score=366.59 Aligned_cols=211 Identities=33% Similarity=0.550 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++++|++ ++|+|+||+|+|||+++|+|+||||||||+++|.|+++|++|+|.++|.++..... .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 37999999999999999999999999999999999999999999999999987654 378999
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCC-CC----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFN-DTVRVNIAYGKEG-NA----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~-gTIreNI~~g~~~-~~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
||+|++.+|. .|++||+.++... .. .++++.++++..++.+++.+. ..+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHH
Confidence 9999999995 7999999876211 11 223456666666666555443 36899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
++++|++|||||||++||+.+.+.+.+.|.++.. ++|+|++||++..+.. ||+|++|++|++++.|+++++++.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999988653 8999999999999875 999999999999999999999865
No 228
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-44 Score=379.25 Aligned_cols=219 Identities=29% Similarity=0.492 Sum_probs=188.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----CCCCeEEECCeeCCC--CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----PDTGHITLDGVEIQK--LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----p~~G~I~idG~di~~--~~~ 530 (703)
.|+++||+++|++ .++|+++||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.++.. .+.
T Consensus 45 ~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 45 KLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred eEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999974 469999999999999999999999999999999999986 689999999999865 346
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCC------------------CCCHHHHHHHHHHhcHHHHHHHhhccccchh
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG------------------NATEAEVLAAAELANAHQFISSLKQGYDTIV 592 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~------------------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~v 592 (703)
..+|+.|+||+|++.+|..|++|||.++... +..++++.++++..++ ++++++.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHHh
Confidence 6788999999999999999999999986211 0112334555555444 33445667
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEE-EEEe
Q 005314 593 GERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLI-AVVK 670 (703)
Q Consensus 593 Ge~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I-~vl~ 670 (703)
.....+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+.. ||+| ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 7888999999999999999999999999999999999999999999999998778999999999999764 9997 5779
Q ss_pred CCEEEEecChhHHhcc
Q 005314 671 NGVIAEKGKHETLVHV 686 (703)
Q Consensus 671 ~G~Ive~Gth~eLl~~ 686 (703)
+|+|++.|+.+++.+.
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999998754
No 229
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-44 Score=374.01 Aligned_cols=213 Identities=29% Similarity=0.436 Sum_probs=185.5
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC--------CCeEEECCeeCCCCCH
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD--------TGHITLDGVEIQKLQL 530 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~--------~G~I~idG~di~~~~~ 530 (703)
|+++|++++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 46999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHHhcceEEEccCCC-CCcccHHHHHhcCCCCC------CC---HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 531 KWLRQQMGLVSQEPV-LFNDTVRVNIAYGKEGN------AT---EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~-LF~gTIreNI~~g~~~~------~t---~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
..+|+.++||+|++. +|..|++|||.++.... .+ ++.+.++ ++.+ |+++.++....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA---------LALA--GATALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHH---------HHHc--CcHhhhcCCcccCC
Confidence 888999999999986 67899999998863111 11 1123333 3333 55666677788999
Q ss_pred hhHHHHHHHHHHhc---------cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEE
Q 005314 601 GGQKQRVAIARAMV---------KAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAV 668 (703)
Q Consensus 601 GGQkQRiaIARAll---------k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~v 668 (703)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998754 789999999999985 5999999
Q ss_pred EeCCEEEEecChhHHhc
Q 005314 669 VKNGVIAEKGKHETLVH 685 (703)
Q Consensus 669 l~~G~Ive~Gth~eLl~ 685 (703)
|++|+|++.|+.+++++
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999875
No 230
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.7e-44 Score=380.69 Aligned_cols=217 Identities=23% Similarity=0.418 Sum_probs=186.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|+ +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+++|
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999996 3569999999999999999999999999999999999999999999999999977 4567889999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
|+||++.+|.+ |++||+.+... ...+.++..+. +++.+..+ |++........+||||||||++|||||+.+
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQR-----VEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 99999986421 11222222221 22334443 555555666789999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|++|||||||++||+.+.+.+++.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998778999999999998865 999999999999999999998753
No 231
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-44 Score=387.68 Aligned_cols=211 Identities=29% Similarity=0.447 Sum_probs=184.0
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC----CHHHHh
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL----QLKWLR 534 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~----~~~~lR 534 (703)
|++ ||+++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+. +...+|
T Consensus 2 l~~-~l~k~~~~---~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 677 99999963 22 3 99999999999999999999999999999999999999999999998753 245678
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 535 QQMGLVSQEPVLFN-DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~-gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
++|+||+|++.+|. .|++|||.|+. ....++++.++++..++.++... ...+||||||||++|||||
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGM-AKSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhh-hhhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHH
Confidence 89999999999996 59999999983 33445667777777766555444 4468999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhccC
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHVK 687 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~ 687 (703)
+++|++||||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++...+
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999988754 689999999999875 49999999999999999999998754
No 232
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.6e-44 Score=369.73 Aligned_cols=216 Identities=22% Similarity=0.344 Sum_probs=175.8
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC--CCCCCCeEEECCeeCCCCCHHHH-hc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF--YDPDTGHITLDGVEIQKLQLKWL-RQ 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~--y~p~~G~I~idG~di~~~~~~~l-R~ 535 (703)
|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.+||+++..++.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999973 4699999999999999999999999999999999999 47999999999999998887665 45
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCCCC--C------CCHHHHHHHHHHhcHHHHHHHhhccccchhc-CCCC-CCChhHH
Q 005314 536 QMGLVSQEPVLFND-TVRVNIAYGKEG--N------ATEAEVLAAAELANAHQFISSLKQGYDTIVG-ERGI-QLSGGQK 604 (703)
Q Consensus 536 ~i~~V~Qe~~LF~g-TIreNI~~g~~~--~------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG-e~G~-~LSGGQk 604 (703)
.++||+|++.+|.+ |++||+.+.... . .+.++..+ .+.+.+..+ |++.... .... +||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK-----LLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH-----HHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 59999999999876 899999764110 0 11111111 122223322 3322222 2222 5999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCEEEEecChh
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD--ADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~--aD~I~vl~~G~Ive~Gth~ 681 (703)
||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999999875 47899999999999976 7999999999999999998
Q ss_pred HHh
Q 005314 682 TLV 684 (703)
Q Consensus 682 eLl 684 (703)
++-
T Consensus 231 ~~~ 233 (243)
T TIGR01978 231 LAK 233 (243)
T ss_pred Hhc
Confidence 653
No 233
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=6.5e-44 Score=372.92 Aligned_cols=230 Identities=29% Similarity=0.434 Sum_probs=192.1
Q ss_pred cEEEEEEEEEcCCCC------CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH-
Q 005314 458 DIEFQHITFKYPARP------DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL- 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~------~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~- 530 (703)
.|+++||+|+|+..+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 388999999997310 3579999999999999999999999999999999999999999999999999988765
Q ss_pred --HHHhcceEEEccCCC--CC-cccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCChh
Q 005314 531 --KWLRQQMGLVSQEPV--LF-NDTVRVNIAYGKE--GNATEAEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLSGG 602 (703)
Q Consensus 531 --~~lR~~i~~V~Qe~~--LF-~gTIreNI~~g~~--~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGG 602 (703)
..+|+.++||+|++. ++ ..|++||+.+... .+.+. +.....+++.+..+ |+++ .......+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK-----AERLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 357889999999983 43 4799999975311 01111 12223455666665 7764 456778899999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecC
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gt 679 (703)
||||++|||||+.+|+||||||||++||+++.+.+.+.|.++.+ ++|+|+|||++..+. .||+|++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999988753 789999999999997 499999999999999999
Q ss_pred hhHHhccCCcHHHHHH
Q 005314 680 HETLVHVKDGIYASLV 695 (703)
Q Consensus 680 h~eLl~~~~g~Y~~l~ 695 (703)
++++... ++.|..-+
T Consensus 236 ~~~~~~~-~~~~~~~~ 250 (268)
T PRK10419 236 VGDKLTF-SSPAGRVL 250 (268)
T ss_pred hhhccCC-CCHHHHHH
Confidence 9999864 66565443
No 234
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1e-43 Score=370.50 Aligned_cols=224 Identities=32% Similarity=0.447 Sum_probs=186.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC---CCeEEECCeeCCCC-----C
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD---TGHITLDGVEIQKL-----Q 529 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~---~G~I~idG~di~~~-----~ 529 (703)
-|+++||++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999973 46999999999999999999999999999999999999986 49999999998654 3
Q ss_pred HHHHhcceEEEccCCCCCc-ccHHHHHhcCCCCC-------------CCHHHHHHHHHHhcHHHHHHHhhccccchhcCC
Q 005314 530 LKWLRQQMGLVSQEPVLFN-DTVRVNIAYGKEGN-------------ATEAEVLAAAELANAHQFISSLKQGYDTIVGER 595 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~-gTIreNI~~g~~~~-------------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~ 595 (703)
...+|+.++||+|++.+|. .|++||+.++.... ..++++.++++..++.++ ....
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-----------AHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-----------HhCC
Confidence 4567889999999999887 59999998862110 012234555555554433 3345
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCC
Q 005314 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNG 672 (703)
Q Consensus 596 G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G 672 (703)
..+||||||||++||||++.+|++|||||||++||.++.+.+.+.|.++.+ ++|+|+|||+++.+ +.||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999999999998753 78999999999976 569999999999
Q ss_pred EEEEecChhHHhccCCcHHHHHHHhh
Q 005314 673 VIAEKGKHETLVHVKDGIYASLVALQ 698 (703)
Q Consensus 673 ~Ive~Gth~eLl~~~~g~Y~~l~~~q 698 (703)
+|++.|+++++ . .....++|...
T Consensus 230 ~i~~~g~~~~~-~--~~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQF-D--NERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHh-c--cHHHHHHHhhh
Confidence 99999999997 2 33556666543
No 235
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.1e-44 Score=365.38 Aligned_cols=214 Identities=25% Similarity=0.381 Sum_probs=172.8
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC---CCCCeEEECCeeCCCCCHHHHh
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD---PDTGHITLDGVEIQKLQLKWLR 534 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~---p~~G~I~idG~di~~~~~~~lR 534 (703)
++|+||+|+||+.. .+++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998642 3679999999999999999999999999999999999999 99999999999875 35678
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchh-cCCCCCCChhHHHHHHHHHH
Q 005314 535 QQMGLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIV-GERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~v-Ge~G~~LSGGQkQRiaIARA 612 (703)
+.++|++|++.+|.+ |++|||.++...... ....++.+...++++ .|+....+.+ .....+||||||||++||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLP-RKSSDAIRKKRVEDV--LLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcc-cccchHHHHHHHHHH--HHHhhcchhhhcccccCcCHHHHHHHHHHHH
Confidence 999999999999987 999999875210000 000111111112220 2233233333 34567999999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCc--hHHhhcCEEEEEeCCEEEEec
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRL--STIRDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrl--sti~~aD~I~vl~~G~Ive~G 678 (703)
++++|++|||||||++||+.+.+.+.+.|.++. +++|+|++||++ ...+.||+|++|++|+|++.|
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998864 478999999998 345779999999999999876
No 236
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.5e-43 Score=380.36 Aligned_cols=218 Identities=28% Similarity=0.455 Sum_probs=183.1
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|+++.+.. ..+|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999973 46999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred EEEccCCCCC-cccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 538 GLVSQEPVLF-NDTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 538 ~~V~Qe~~LF-~gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
|||||++.+| ..|++||+.+... ...+..+..+.++. +.++ ..|++..++.+ .+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~----~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARV----SDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCCh----hhCCHHHHHHHHHHHHHhc
Confidence 9999999986 5699999986311 11233332222111 1111 13455555555 4799999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||+|++|++|+|++.|+.+++.+.
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998875 4899999999999985 5999999999999999999998753
No 237
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.8e-43 Score=366.85 Aligned_cols=227 Identities=27% Similarity=0.393 Sum_probs=187.0
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC----CCCeEEECCeeCCCCCHHHH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP----DTGHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p----~~G~I~idG~di~~~~~~~l 533 (703)
.|+++||+|+| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++... ...
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 3699999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcceEEEccCCC-CCc--ccHHHHHhcCC---CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 534 RQQMGLVSQEPV-LFN--DTVRVNIAYGK---EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 534 R~~i~~V~Qe~~-LF~--gTIreNI~~g~---~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
++.|+||+|++. .|. .|+.+|+.+.. .....++++.++++..++.++ ++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 468999999985 454 58888875420 112334566777776665432 2345667789999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHh
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
+|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988753 789999999999985 59999999999999999999998
Q ss_pred ccCCcHHH-HHHHhh
Q 005314 685 HVKDGIYA-SLVALQ 698 (703)
Q Consensus 685 ~~~~g~Y~-~l~~~q 698 (703)
+.+...|. .++..+
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (254)
T PRK10418 230 NAPKHAVTRSLVSAH 244 (254)
T ss_pred hCCCCHHHHHHHHhh
Confidence 65344344 355544
No 238
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=9.6e-44 Score=377.86 Aligned_cols=201 Identities=24% Similarity=0.414 Sum_probs=172.4
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcc-cHH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TVR 552 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~g-TIr 552 (703)
.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++||||+|++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 479999999999999999999999999999999999999999999999999976 456778999999999999976 999
Q ss_pred HHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCc
Q 005314 553 VNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATS 627 (703)
Q Consensus 553 eNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTS 627 (703)
|||.+... ...+. +++.++++..++. ........+||||||||++|||||+.+|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELG-----------EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99987421 11222 2344444444443 22334557899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 628 ALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 628 aLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
+||+++.+.+.+.|.++. +++|+|++||++..+.. ||+|++|++|+|++.|+.+++.+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999998875 47899999999999864 999999999999999999998753
No 239
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.6e-43 Score=359.43 Aligned_cols=205 Identities=32% Similarity=0.461 Sum_probs=175.5
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH---HHh
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK---WLR 534 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~---~lR 534 (703)
|+++||++.|+... ..++|+|+||++++|+++||+|+||||||||+++|+|+++|++|+|.+||+++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997421 25799999999999999999999999999999999999999999999999999877643 578
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCC--CCCCHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 535 QQMGLVSQEPVLFN-DTVRVNIAYGKE--GNATEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~-gTIreNI~~g~~--~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
+.++|++|++.+|. .|+.||+.++.. +..+.+ ++.++++..++.+++. ....+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-----------YYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 99999999999998 699999987631 122332 3444455555544444 44468999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCEE
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVI 674 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~G~I 674 (703)
+||||++++|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988763 7999999999998888999999999986
No 240
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-43 Score=353.36 Aligned_cols=191 Identities=26% Similarity=0.362 Sum_probs=165.7
Q ss_pred cEEEEEEEEEcCCC-CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC---CCCCeEEECCeeCCCCCHHHH
Q 005314 458 DIEFQHITFKYPAR-PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD---PDTGHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~-~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~---p~~G~I~idG~di~~~~~~~l 533 (703)
.+.++||+|.||.+ .+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++..+. ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 46899999999853 45689999999999999999999999999999999999999 89999999999998765 467
Q ss_pred hcceEEEccCCCCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 534 RQQMGLVSQEPVLFN-DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~-gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
|++++|++|++.+|. .|++|||.++.. .. .......||||||||++||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~--~~---------------------------~~~~~~~LS~Ge~qrl~lara 132 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR--CK---------------------------GNEFVRGISGGERKRVSIAEA 132 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh--hc---------------------------cccchhhCCHHHHHHHHHHHH
Confidence 889999999998887 499999987621 00 223456899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEcc-CchHH-hhcCEEEEEeCCEEEEec
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAH-RLSTI-RDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaH-rlsti-~~aD~I~vl~~G~Ive~G 678 (703)
++++|++|||||||++||+++++.+.+.|.++.+ ++|+|+++| ++..+ +.||+|++|++|++++.|
T Consensus 133 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998754 467677655 45555 669999999999999865
No 241
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.2e-43 Score=382.49 Aligned_cols=212 Identities=33% Similarity=0.504 Sum_probs=179.1
Q ss_pred EEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC----HHHHhcceE
Q 005314 463 HITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ----LKWLRQQMG 538 (703)
Q Consensus 463 ~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~----~~~lR~~i~ 538 (703)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.... ...+|++|+
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999963 23 4 999999999999999999999999999999999999999999999986543 346788999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCCCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKEGNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
||+|++.+|.. |++|||.|+.. .... +++.++++.. |++........+||||||||++|||||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFERVIELL-----------GIGHLLGRLPGRLSGGEKQRVAIGRAL 146 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhh-ccChhHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999975 99999998732 1211 2244444444 444445556679999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhccCCcH
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHVKDGI 690 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~~g~ 690 (703)
+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|+|++.|+.+++...+.-.
T Consensus 147 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 226 (354)
T TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLP 226 (354)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcc
Confidence 999999999999999999999999999998754 7899999999998854 9999999999999999999998754433
Q ss_pred H
Q 005314 691 Y 691 (703)
Q Consensus 691 Y 691 (703)
|
T Consensus 227 ~ 227 (354)
T TIGR02142 227 W 227 (354)
T ss_pred c
Confidence 3
No 242
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-43 Score=365.30 Aligned_cols=203 Identities=29% Similarity=0.452 Sum_probs=172.0
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999973 4699999999999999999999999999999999999999999999999998643 34699
Q ss_pred EEccCCCCCc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFN-DTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~-gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
||+|++.+|. .|++||+.++.. ...+. +++.++++..++ +........+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL-----------EGAEKRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhHhhCChhhCCHHHHHHHHHHHH
Confidence 9999999987 599999987521 11222 234444444443 333344567899999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEe--CCEEEEecCh
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVK--NGVIAEKGKH 680 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~--~G~Ive~Gth 680 (703)
|+++|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||++..+. .||+|++|+ +|+|++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999998863 3799999999999885 499999999 5999998754
No 243
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.9e-43 Score=363.56 Aligned_cols=228 Identities=27% Similarity=0.424 Sum_probs=188.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCee-----CCCCCHHH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVE-----IQKLQLKW 532 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~d-----i~~~~~~~ 532 (703)
.|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||++ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999974 368999999999999999999999999999999999999999999999988 77666543
Q ss_pred ----HhcceEEEccCCCC---CcccHHHHHhcCC--CCCCCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChh
Q 005314 533 ----LRQQMGLVSQEPVL---FNDTVRVNIAYGK--EGNATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGG 602 (703)
Q Consensus 533 ----lR~~i~~V~Qe~~L---F~gTIreNI~~g~--~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGG 602 (703)
+++.++|++|++.+ +..|+.+|+.+.. .......+. ...+.++++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 35689999999852 3458899986421 000011111 13455677777 443 5667788899999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecC
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gt 679 (703)
||||++|||||+++|++|||||||++||+.+.+.+.+.|.++.+ +.|+|+|||++..+. .||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988643 789999999999997 499999999999999999
Q ss_pred hhHHhccCCcHHHHHH
Q 005314 680 HETLVHVKDGIYASLV 695 (703)
Q Consensus 680 h~eLl~~~~g~Y~~l~ 695 (703)
.+++...+...|.+++
T Consensus 233 ~~~~~~~~~~~~~~~~ 248 (253)
T TIGR02323 233 TDQVLDDPQHPYTQLL 248 (253)
T ss_pred HHHHhcCCCCHHHHHH
Confidence 9999865455666544
No 244
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.6e-43 Score=364.47 Aligned_cols=216 Identities=21% Similarity=0.346 Sum_probs=173.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC--CCCCCCeEEECCeeCCCCCHHHHh-c
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF--YDPDTGHITLDGVEIQKLQLKWLR-Q 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~--y~p~~G~I~idG~di~~~~~~~lR-~ 535 (703)
|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+ ++|++|+|.+||+++..++....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 4699999999999999999999999999999999999 479999999999999888877665 5
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCC------CC-C-CCHHHHHHHHHHhcHHHHHH--HhhccccchhcCCCCCCChhHH
Q 005314 536 QMGLVSQEPVLFND-TVRVNIAYGK------EG-N-ATEAEVLAAAELANAHQFIS--SLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 536 ~i~~V~Qe~~LF~g-TIreNI~~g~------~~-~-~t~~ei~~A~~~a~l~~~I~--~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
.++||+|++.+|.. |..+|+.+.. .. + ....++.+ .+.+.++ .+|+++.+... ..+||||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~ 151 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQD-----LMEEKIALLKMPEDLLTRSV--NVGFSGGEK 151 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHH-----HHHHHHHHcCCChhhcccCC--CCCCCHHHH
Confidence 79999999987764 5445443210 00 0 01111111 1112222 34555544322 237999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh--cCEEEEEeCCEEEEecChh
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRD--ADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~--aD~I~vl~~G~Ive~Gth~ 681 (703)
||++||||++++|+||||||||++||+++.+.+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|+|++.|+++
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999988754 7899999999999987 8999999999999999998
Q ss_pred HHh
Q 005314 682 TLV 684 (703)
Q Consensus 682 eLl 684 (703)
+..
T Consensus 232 ~~~ 234 (248)
T PRK09580 232 LVK 234 (248)
T ss_pred HHH
Confidence 653
No 245
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-43 Score=341.98 Aligned_cols=170 Identities=35% Similarity=0.645 Sum_probs=158.4
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
++++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999998766 67789999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAP 617 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p 617 (703)
||+|++.+|.+ |++||+. |||||+||++|||||+++|
T Consensus 77 ~~~q~~~~~~~~tv~~~~~------------------------------------------LS~G~~qrv~laral~~~p 114 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK------------------------------------------LSGGMKQRLALAQALLHDP 114 (173)
T ss_pred EEecCCccccCCcHHHHhh------------------------------------------cCHHHHHHHHHHHHHHcCC
Confidence 99999999886 9999984 9999999999999999999
Q ss_pred CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEE
Q 005314 618 KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVI 674 (703)
Q Consensus 618 ~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~I 674 (703)
++|||||||++||+.+.+.+.+.|.++. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 115 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 115 ELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999875 4689999999999887 5999999999974
No 246
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-43 Score=343.11 Aligned_cols=172 Identities=42% Similarity=0.675 Sum_probs=160.1
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC--HHHHhcc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ--LKWLRQQ 536 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~--~~~lR~~ 536 (703)
|+++|++|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++ ...++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999973 46999999999999999999999999999999999999999999999999998876 6778899
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 537 MGLVSQEPVLFN-DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 537 i~~V~Qe~~LF~-gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
++|++|+|.+|. .|++||+.+. ||||||||++||||+++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~----------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG----------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec----------------------------------------CCHHHHHHHHHHHHHHC
Confidence 999999999886 5999998663 99999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCE
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGV 673 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~ 673 (703)
+|+++||||||++||+.+...+.+.|.++.+ ++|+|+|||++..+. .||+|++|++|+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999988765 589999999999998 599999999985
No 247
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-43 Score=339.86 Aligned_cols=171 Identities=54% Similarity=0.906 Sum_probs=162.4
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++++|++. ..++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 5789999999753 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
|++|++.+|+.|++||+ ||||||||++||||++.+|+
T Consensus 80 ~~~~~~~~~~~t~~e~l-------------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-------------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred EEcCCchhccchHHHHh-------------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 99999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCE
Q 005314 619 ILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGV 673 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~ 673 (703)
+|||||||++||+.+...+.+.|.++.+++|+|++||++..+..||++++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999998877899999999999998899999999985
No 248
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-43 Score=347.46 Aligned_cols=182 Identities=27% Similarity=0.438 Sum_probs=163.0
Q ss_pred cEEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC--CCCCCeEEECCeeCCCCCHHHHh
Q 005314 458 DIEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFY--DPDTGHITLDGVEIQKLQLKWLR 534 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y--~p~~G~I~idG~di~~~~~~~lR 534 (703)
.|+++|++|+|+++. ++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.+||+++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 257999999999999999999999999999999999986 489999999999886 5678
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 535 QQMGLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
++++|++|++.+|.. |++||+.++ .. ++ +||||||||++||||+
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~-~~----------~~------------------------~LSgGe~qrv~la~al 123 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS-AL----------LR------------------------GLSVEQRKRLTIGVEL 123 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH-HH----------Hh------------------------cCCHHHhHHHHHHHHH
Confidence 899999999988875 999999875 10 00 8999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeC-CEEEEec
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLST--IRDADLIAVVKN-GVIAEKG 678 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlst--i~~aD~I~vl~~-G~Ive~G 678 (703)
+++|++|||||||++||+++.+.+.+.|.++. +++|+|+|||+++. .+.||+|++|++ |+|++.|
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999998875 47999999999984 577999999999 9999876
No 249
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=351.87 Aligned_cols=204 Identities=31% Similarity=0.494 Sum_probs=171.8
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC----HHHHhc
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ----LKWLRQ 535 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~----~~~lR~ 535 (703)
.+ ||+++|++ ..+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+|+
T Consensus 3 ~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 89999974 334 99999999 999999999999999999999999999999999999986432 345788
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 536 QMGLVSQEPVLFN-DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 536 ~i~~V~Qe~~LF~-gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
+++||+|++.+|. .|++||+.++.. ..+.++ ....+.++++.+ |++..+.....+||||||||++||||++
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLK-RKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHh-hCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHh
Confidence 9999999999986 599999988622 112111 112234455554 5665666778899999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEec
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKG 678 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~G 678 (703)
.+|+||||||||++||+++.+.+.+.|.++.+ ++|+|+|||++..+. .||+|++|++|++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999988753 789999999999985 59999999999999876
No 250
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.6e-42 Score=359.49 Aligned_cols=213 Identities=22% Similarity=0.345 Sum_probs=177.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC--CCCCCCeEEECCeeCCCCCHHHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF--YDPDTGHITLDGVEIQKLQLKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~--y~p~~G~I~idG~di~~~~~~~lR~ 535 (703)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++..++....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999973 4699999999999999999999999999999999998 7899999999999999888776665
Q ss_pred -ceEEEccCCCCCcc-cHHHHHhcCCCC--------CCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCC-CCC
Q 005314 536 -QMGLVSQEPVLFND-TVRVNIAYGKEG--------NATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGI-QLS 600 (703)
Q Consensus 536 -~i~~V~Qe~~LF~g-TIreNI~~g~~~--------~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~-~LS 600 (703)
.+++++|++.+|.+ |+++|+.++... +.+. +++.++++..++.+ +.+..... +||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCC
Confidence 58999999999986 899998765211 0111 22333444433321 22333333 599
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCEEEEe
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD--ADLIAVVKNGVIAEK 677 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~--aD~I~vl~~G~Ive~ 677 (703)
||||||++||||++++|+||||||||++||+++.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998875 47999999999999875 899999999999999
Q ss_pred cChhHH
Q 005314 678 GKHETL 683 (703)
Q Consensus 678 Gth~eL 683 (703)
|+++++
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999844
No 251
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.1e-42 Score=346.38 Aligned_cols=183 Identities=30% Similarity=0.499 Sum_probs=163.9
Q ss_pred cEEEEEEEEEcCCC---CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC--CCCCCeEEECCeeCCCCCHHH
Q 005314 458 DIEFQHITFKYPAR---PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFY--DPDTGHITLDGVEIQKLQLKW 532 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~---~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y--~p~~G~I~idG~di~~~~~~~ 532 (703)
.|+++||+|+|++. .+.++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.+||+++.. .+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999742 0257999999999999999999999999999999999999 9999999999999875 37
Q ss_pred HhcceEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 533 LRQQMGLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 533 lR~~i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
+|+.++|++|++.+|.. |++||+.++ .. + + +||||||||++|||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~-~~------~---------~-------------------~LS~G~~qrv~lar 124 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFA-AK------L---------R-------------------GLSGGERKRVSIAL 124 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHH-HH------h---------c-------------------cCCHHHHHHHHHHH
Confidence 78899999999998874 999999765 10 0 0 89999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCch-HH-hhcCEEEEEeCCEEEEec
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLS-TI-RDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrls-ti-~~aD~I~vl~~G~Ive~G 678 (703)
|++++|++|||||||++||..+.+.+.+.|+++. +++|+|+|||+++ .+ +.||+|++|++|++++.|
T Consensus 125 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 125 ELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999998875 4899999999997 45 469999999999998765
No 252
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.3e-42 Score=353.48 Aligned_cols=206 Identities=25% Similarity=0.442 Sum_probs=178.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 578999999973 46999999999999999999999999999999999999999999999999876422 35899
Q ss_pred EEccCCCCCc-ccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 539 LVSQEPVLFN-DTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 539 ~V~Qe~~LF~-gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
|++|++.+|. .|++||+.++.. ...+++++.++++..++.++... ...+||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 599999986421 12345677777777776654433 3468999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhH
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~e 682 (703)
|++|||||||++||+++.+.+.+.|.++. +++|+|++||++..+. .||+|++|++|+|++.|+-++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4789999999999985 599999999999999998654
No 253
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=362.86 Aligned_cols=210 Identities=30% Similarity=0.440 Sum_probs=176.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHh-cc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLR-QQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR-~~ 536 (703)
.|+++||+++|++ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++.. ..+ +.
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNL 79 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccce
Confidence 5899999999973 3469999999999999999999999999999999999999999999999998752 333 46
Q ss_pred eEEEccCCCC---CcccHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 537 MGLVSQEPVL---FNDTVRVNIAYGKEG---------NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 537 i~~V~Qe~~L---F~gTIreNI~~g~~~---------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
++|++|++.+ +..++++|+.++... ...++++.++++..++.+++ ++ ...+||||||
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~----~~~~LSgG~~ 148 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HR----QIGELSGGQK 148 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cC----CcccCCHHHH
Confidence 9999999875 556899999764210 11223456666666665443 22 3457999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~e 682 (703)
||++|||||+++|+||||||||++||+.+.+.+.+.|.++. +++|+|+|||++..+ +.||+++++ +|++++.|++++
T Consensus 149 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 99999999999999999999999999999999999998875 478999999999987 559999777 899999999999
Q ss_pred Hhc
Q 005314 683 LVH 685 (703)
Q Consensus 683 Ll~ 685 (703)
+..
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 864
No 254
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4e-42 Score=355.57 Aligned_cols=208 Identities=25% Similarity=0.453 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999973 4699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEccCCCCCc---ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 538 GLVSQEPVLFN---DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 538 ~~V~Qe~~LF~---gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
+|++|++.++. .|+++|+.+. . ..+++++.++++..++.+++.. ....||||||||++||||++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~ 136 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-P-GTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALL 136 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-c-cccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 99999998865 4899998765 2 3456788888888888776543 34689999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhccCCcHH
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHVKDGIY 691 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y 691 (703)
++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++ +|++.|+.+++.+ .+.|
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~ 213 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEF 213 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHH
Confidence 99999999999999999999999999988753 789999999999985 5999999965 7999999999874 5567
Q ss_pred HHHH
Q 005314 692 ASLV 695 (703)
Q Consensus 692 ~~l~ 695 (703)
.+++
T Consensus 214 ~~~~ 217 (251)
T PRK09544 214 ISMF 217 (251)
T ss_pred HHHh
Confidence 7766
No 255
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.6e-42 Score=341.65 Aligned_cols=172 Identities=27% Similarity=0.493 Sum_probs=158.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH-HHHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL-KWLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~-~~lR~~ 536 (703)
.|+++|++++| +|+++||+|++|++++|+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999998 7999999999999999999999999999999999999999999999999988874 457889
Q ss_pred eEEEccCC----CCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 537 MGLVSQEP----VLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 537 i~~V~Qe~----~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
++||+|++ .+++.|++||+.++ .. ||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~-~~-------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALS-SL-------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHH-hh-------------------------------------cCHHHHHHHHHHHH
Confidence 99999995 34567999999876 21 99999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEE
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVI 674 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~I 674 (703)
++.+|++|||||||++||+++.+.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999998874 47999999999998876 999999999975
No 256
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-43 Score=352.52 Aligned_cols=226 Identities=35% Similarity=0.519 Sum_probs=196.0
Q ss_pred cEEEEEEEEEcCCCCCc---------------------ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC
Q 005314 458 DIEFQHITFKYPARPDV---------------------QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG 516 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~---------------------~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G 516 (703)
.|+++||+.-+..++.. --++|+||+|+.||+..|-|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 58888888877654321 238899999999999999999999999999999999999999
Q ss_pred eEEECCeeCCCCCHHHHh----cceEEEccCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhc
Q 005314 517 HITLDGVEIQKLQLKWLR----QQMGLVSQEPVLFN-DTVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQ 586 (703)
Q Consensus 517 ~I~idG~di~~~~~~~lR----~~i~~V~Qe~~LF~-gTIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~ 586 (703)
+|++||.|+..++.+.|| ++++.|+|...||. -||.||..||.. ...+ ++...++++.+|+++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999977654 78999999999985 599999999942 1222 244678888999988877655
Q ss_pred cccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchH-Hhhc
Q 005314 587 GYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLST-IRDA 663 (703)
Q Consensus 587 G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlst-i~~a 663 (703)
.+||||++||+.|||||..||+|||+|||+|||||--....|+-|.++- -.||+|+|||+|.. ++-.
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 7899999999999999999999999999999999999999999986643 37999999999985 6889
Q ss_pred CEEEEEeCCEEEEecChhHHhccCCcHHHHH
Q 005314 664 DLIAVVKNGVIAEKGKHETLVHVKDGIYASL 694 (703)
Q Consensus 664 D~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l 694 (703)
|||..|++|+||+.||.+|++.+|...|-+-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence 9999999999999999999998777777543
No 257
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.6e-42 Score=334.97 Aligned_cols=163 Identities=32% Similarity=0.499 Sum_probs=152.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|++. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5789999999742 46999999999999999999999999999999999999999999999883 6899
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
|++|++.+|++|++|||.++ ...+||||||||++||||++++|+
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~------------------------------------~~~~LS~G~~~rv~laral~~~p~ 111 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP------------------------------------WDDVLSGGEQQRLAFARLLLHKPK 111 (166)
T ss_pred EECCCCccccccHHHHhhcc------------------------------------CCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999764 357999999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q 005314 619 ILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G 672 (703)
+|||||||++||+++.+.+.+.|.++ ++|+|+|||++.....||+|++|++|
T Consensus 112 ~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 112 FVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999999999999999999886 68999999999998999999999876
No 258
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.5e-42 Score=348.66 Aligned_cols=195 Identities=32% Similarity=0.502 Sum_probs=165.3
Q ss_pred EEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH----HHHhcc
Q 005314 461 FQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL----KWLRQQ 536 (703)
Q Consensus 461 ~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~----~~lR~~ 536 (703)
++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..+.. ..+|+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999973 469999999999999999999999999999999999999999999999999765442 246789
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCCC-CC----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 537 MGLVSQEPVLFN-DTVRVNIAYGKEG-NA----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 537 i~~V~Qe~~LF~-gTIreNI~~g~~~-~~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
++||+|++.+|. .|++||+.++... .. .++++.++++..++.++ ......+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHHHHHHHH
Confidence 999999999997 6999999875210 11 23345555555555333 3344578999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVV 669 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl 669 (703)
|||+++|++|||||||++||+++.+.+.+.|.++. +++|+|++||++..+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998875 478999999999988899999985
No 259
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.5e-42 Score=343.62 Aligned_cols=185 Identities=25% Similarity=0.423 Sum_probs=164.0
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC--CCCCCCeEEECCeeCCCCCHHHH-hc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF--YDPDTGHITLDGVEIQKLQLKWL-RQ 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~--y~p~~G~I~idG~di~~~~~~~l-R~ 535 (703)
++++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |+
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 578999999973 4699999999999999999999999999999999999 58999999999999998887654 56
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 536 QMGLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 536 ~i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
+++||+|++.+|.+ |+++|+ . ....+||||||||++||||++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~-----------~~~~~LS~G~~qrv~laral~ 120 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL--------------------------R-----------YVNEGFSGGEKKRNEILQLLL 120 (200)
T ss_pred cEEEeecChhhccCccHHHHH--------------------------h-----------hccccCCHHHHHHHHHHHHHh
Confidence 69999999999876 444444 0 012479999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh--hcCEEEEEeCCEEEEecChhHHh
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIR--DADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~--~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
++|+||||||||++||+++...+.+.|.++.+ ++|+|++||++..+. .||+|++|++|++++.| ..|+.
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999999998754 789999999999998 69999999999999999 44454
No 260
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.7e-42 Score=361.76 Aligned_cols=214 Identities=31% Similarity=0.520 Sum_probs=188.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+.+|+. +..+|+|+||+|++|+.+|++||||||||||+++|+|+..|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999973 35799999999999999999999999999999999999999999999999998765 77899999
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC----C-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKE----G-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~----~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||||+|.++.. |++||+.|... + +..++++.+.++..++.+. . ..+-.+||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~---------~--~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK---------A--NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh---------h--CcchhhcCHHHHHHHHHHH
Confidence 999999998866 99999987521 1 1234567777777776431 1 3456789999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-C-ceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV-G-RTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~-rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+-+++..
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999998765 4 699999999999977 99999999999999999998765
No 261
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.9e-42 Score=352.62 Aligned_cols=208 Identities=30% Similarity=0.423 Sum_probs=172.0
Q ss_pred cccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC----CCCeEEECCeeCCCCCHHHHhcceEEEccCCC-CCc--
Q 005314 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP----DTGHITLDGVEIQKLQLKWLRQQMGLVSQEPV-LFN-- 548 (703)
Q Consensus 476 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p----~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~-LF~-- 548 (703)
+|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+||+++... +..++.|+||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 333468999999995 344
Q ss_pred ccHHHHHhcCCC--CCC---CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEee
Q 005314 549 DTVRVNIAYGKE--GNA---TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLD 623 (703)
Q Consensus 549 gTIreNI~~g~~--~~~---t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLD 623 (703)
.|+.||+.+... ... .++++.++++..++. ++ ++.......+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLP-------DP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCC-------ch-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 599999865311 011 123355555555543 11 24455677899999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhccCCcHHHH
Q 005314 624 EATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHVKDGIYAS 693 (703)
Q Consensus 624 EaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~ 693 (703)
|||++||..+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+.+++...+.+.|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998753 789999999999985 59999999999999999999998654555654
No 262
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.1e-41 Score=352.25 Aligned_cols=221 Identities=24% Similarity=0.401 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
++++||++. .+|+|+||+|++|++++|+|+||||||||+++|+|+++ .+|+|.+||.++...+...+++.++
T Consensus 1 ~~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 1 MQLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred Ccccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheE
Confidence 356788874 17999999999999999999999999999999999995 5999999999999888888889999
Q ss_pred EEccCCC-CCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc--
Q 005314 539 LVSQEPV-LFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK-- 615 (703)
Q Consensus 539 ~V~Qe~~-LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk-- 615 (703)
||+|++. ++..|+++|+.++.....+.++. ...++++++.+ |++.........||||||||++||||++.
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~ 145 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVW 145 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 9999985 55789999999873211122111 11233444444 44444556678999999999999999997
Q ss_pred -----CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccCC
Q 005314 616 -----APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 616 -----~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~~ 688 (703)
+|++|||||||++||+++.+.+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+ .
T Consensus 146 ~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~--~ 223 (248)
T PRK03695 146 PDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT--P 223 (248)
T ss_pred cccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC--c
Confidence 679999999999999999999999998875 478999999999966 5699999999999999999999875 3
Q ss_pred cHHHHHHH
Q 005314 689 GIYASLVA 696 (703)
Q Consensus 689 g~Y~~l~~ 696 (703)
....+.+.
T Consensus 224 ~~~~~~~~ 231 (248)
T PRK03695 224 ENLAQVFG 231 (248)
T ss_pred hHHHHHhC
Confidence 34455554
No 263
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.6e-42 Score=337.82 Aligned_cols=177 Identities=36% Similarity=0.594 Sum_probs=160.8
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEE
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~ 539 (703)
+++||+|+|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999974 469999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCE
Q 005314 540 VSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKI 619 (703)
Q Consensus 540 V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~I 619 (703)
++| +++..++.+++. ....+||||||||++||||++++|++
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999 555566655443 34678999999999999999999999
Q ss_pred EEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEec
Q 005314 620 LLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 620 LlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~G 678 (703)
|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+ +.||+|++|++|++++.|
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999998765 78999999999997 569999999999998765
No 264
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=395.10 Aligned_cols=229 Identities=29% Similarity=0.397 Sum_probs=187.9
Q ss_pred cEEEEEEEEEcCCCC--------CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC
Q 005314 458 DIEFQHITFKYPARP--------DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ 529 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~--------~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~ 529 (703)
-|+++||++.|+.+. ..++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999997321 246999999999999999999999999999999999999999999999999998776
Q ss_pred HH---HHhcceEEEccCC--CCCc-ccHHHHHhcCCC-CCC-CH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCC
Q 005314 530 LK---WLRQQMGLVSQEP--VLFN-DTVRVNIAYGKE-GNA-TE----AEVLAAAELANAHQFISSLKQGYDTIVGERGI 597 (703)
Q Consensus 530 ~~---~lR~~i~~V~Qe~--~LF~-gTIreNI~~g~~-~~~-t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 597 (703)
.. .+|++|+||+|+| .+|. .|++||+.++.. ... +. +++.++++..++. +........
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~----------~~~~~~~~~ 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLL----------PEHAWRYPH 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCC----------HHHhhCCcc
Confidence 43 4678999999998 3664 599999976410 011 12 2334444444431 122334557
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEE
Q 005314 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVI 674 (703)
Q Consensus 598 ~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~I 674 (703)
+||||||||++|||||+.+|+|||||||||+||..+...|.+.|.++.+ +.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999988653 7899999999999865 999999999999
Q ss_pred EEecChhHHhccCCcHHHH-HHH
Q 005314 675 AEKGKHETLVHVKDGIYAS-LVA 696 (703)
Q Consensus 675 ve~Gth~eLl~~~~g~Y~~-l~~ 696 (703)
+|.|+.+++...+...|.+ |+.
T Consensus 543 v~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 543 VEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999998755666765 443
No 265
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-41 Score=372.12 Aligned_cols=229 Identities=33% Similarity=0.494 Sum_probs=190.8
Q ss_pred cEEEEEEEEEcCCC--------CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCee--CCC
Q 005314 458 DIEFQHITFKYPAR--------PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVE--IQK 527 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~--------~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~d--i~~ 527 (703)
-++++|++.+|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999842 13578999999999999999999999999999999999999999999999977 333
Q ss_pred CCHHHHhcceEEEccCCCCC---cccHHHHHhcCCC--CCC----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCC
Q 005314 528 LQLKWLRQQMGLVSQEPVLF---NDTVRVNIAYGKE--GNA----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQ 598 (703)
Q Consensus 528 ~~~~~lR~~i~~V~Qe~~LF---~gTIreNI~~g~~--~~~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 598 (703)
-+.+.+|+++-+|+|||+-. ..||+++|.--.. ... .++.+.+.++++++.. -.+..+..+
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~----------~~l~ryP~e 429 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP----------EFLDRYPHE 429 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH----------HHHhcCchh
Confidence 33567889999999999732 4599999853310 011 1123444455555432 135567789
Q ss_pred CChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEE
Q 005314 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIA 675 (703)
Q Consensus 599 LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Iv 675 (703)
||||||||+||||||..+|++||+||||||||+-+.+.|.+.|.++.+ |-|.|+|||++..++. ||||+||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999987654 7899999999999976 9999999999999
Q ss_pred EecChhHHhccCCcHHHHHHH
Q 005314 676 EKGKHETLVHVKDGIYASLVA 696 (703)
Q Consensus 676 e~Gth~eLl~~~~g~Y~~l~~ 696 (703)
|.|+.+++.+.+.-.|.+...
T Consensus 510 E~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 510 EEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 999999999988889987654
No 266
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-41 Score=340.73 Aligned_cols=195 Identities=24% Similarity=0.366 Sum_probs=164.1
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 789999999973 469999999999999999999999999999999999999999999999999875 3467889999
Q ss_pred EEccCCCCC-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 005314 539 LVSQEPVLF-NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAP 617 (703)
Q Consensus 539 ~V~Qe~~LF-~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p 617 (703)
|++|++.+| ..|++||+.++......+.++.++++..++.+ ..+ ....+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~----~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEH-------LID----YPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCch-------hhh----CChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999986 57999999987211122233444444433322 222 233579999999999999999999
Q ss_pred CEEEeeccCcCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhhcCEEEE
Q 005314 618 KILLLDEATSALDAESERVIQDALERV-MVGRTTVVIAHRLSTIRDADLIAV 668 (703)
Q Consensus 618 ~ILlLDEaTSaLD~~se~~v~~~l~~~-~~~rT~IvIaHrlsti~~aD~I~v 668 (703)
++|||||||++||+.+...+.+.|.++ .+++|+|++||+...+.+||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999986 357899999999999999997654
No 267
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.3e-41 Score=338.87 Aligned_cols=195 Identities=22% Similarity=0.333 Sum_probs=169.8
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 578999999973 46999999999999999999999999999999999999999999999999987653 56789999
Q ss_pred EEccCCCCC-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 005314 539 LVSQEPVLF-NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAP 617 (703)
Q Consensus 539 ~V~Qe~~LF-~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p 617 (703)
|++|++.++ +.|++||+.+. ....+++++.++++..++.++.. ....+||||||||++||||++++|
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFW-HADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred EeccccccCCCcCHHHHHHhh-cccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 67999999887 33345677888888888765432 234679999999999999999999
Q ss_pred CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH-HhhcCEEEEE
Q 005314 618 KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLST-IRDADLIAVV 669 (703)
Q Consensus 618 ~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlst-i~~aD~I~vl 669 (703)
++|||||||++||+.+.+.+.+.|.+.. +++|+|+|||+... ...+|+.+++
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999998764 47999999998765 4668898877
No 268
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-42 Score=325.44 Aligned_cols=214 Identities=30% Similarity=0.515 Sum_probs=184.4
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|++.+++.+|++ -.++++|+||+++.|+.++|.|+|||||||++++|..|+.|++|.|++||.|+... +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 688999999984 35689999999999999999999999999999999999999999999999998764 578899999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
+++-+.-|+.. |.||||.|... .+.. +.++.+..|.-++.+.+ |+. -.+||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rR----v~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRR----VGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHH----HhhhchhhHHHHHHHHH
Confidence 99988888865 99999988731 1222 23344444444444433 334 44699999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|++||+|+|||||||+||--+.+.+++-+.+... ||++|+-||-++.++ -||+++++.+|++|..|+-++|.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999998765 999999999999998 6999999999999999999998764
No 269
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.8e-41 Score=326.70 Aligned_cols=159 Identities=33% Similarity=0.574 Sum_probs=148.8
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH-HHHhcce
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL-KWLRQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~-~~lR~~i 537 (703)
|+++||+++|++ .++|+++||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+++...+. +..|+++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 579999999974 369999999999999999999999999999999999999999999999999998876 4567899
Q ss_pred EEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 005314 538 GLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAP 617 (703)
Q Consensus 538 ~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p 617 (703)
+|++| ||||||||++||||++++|
T Consensus 78 ~~~~q--------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 78 AMVYQ--------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEEEe--------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 99999 9999999999999999999
Q ss_pred CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEE
Q 005314 618 KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAE 676 (703)
Q Consensus 618 ~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive 676 (703)
++|||||||++||.++.+.+.+.|+++. +++|+|++||++..+. .||+|++|++|++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999998874 4789999999999875 499999999999986
No 270
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.5e-41 Score=384.33 Aligned_cols=214 Identities=27% Similarity=0.447 Sum_probs=183.1
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHh-cc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLR-QQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR-~~ 536 (703)
.|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|++.|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999973 4699999999999999999999999999999999999999999999999999888776654 57
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCCC-CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEGN-ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~~-~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
+|||+|++.+|.. |++||+.++.... ..++++.++++..++ +........+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGC-----------QLDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCC-----------CccccCChhhCCHHHHHHHHHHHHHH
Confidence 9999999998875 9999999873211 112334444444443 32333455689999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhc
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
.+|+||||||||++||+.+...+.+.|.++. +++|+|+|||++..+. .||+|++|++|+|++.|+.+++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998864 4789999999999885 599999999999999999988764
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-41 Score=384.07 Aligned_cols=217 Identities=27% Similarity=0.433 Sum_probs=182.0
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC--CCCeEEECCeeCCCCCHHH-Hh
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP--DTGHITLDGVEIQKLQLKW-LR 534 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p--~~G~I~idG~di~~~~~~~-lR 534 (703)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999996 8999999999998877654 56
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCCC----CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 535 QQMGLVSQEPVLFND-TVRVNIAYGKEG----NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~g-TIreNI~~g~~~----~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
++++||+|++.+|.. |++|||.++... ..+.++..+ .+.++++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 889999999998865 999999987321 112222211 123334443 44333445567899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHh
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl 684 (703)
||||+.+|+|||||||||+||+++...+.+.|.++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.+++.
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999998864 47899999999998864 9999999999999999988764
No 272
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.5e-41 Score=345.69 Aligned_cols=192 Identities=33% Similarity=0.465 Sum_probs=161.6
Q ss_pred ccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCc-ccHHHHH
Q 005314 477 FRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTVRVNI 555 (703)
Q Consensus 477 L~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~-gTIreNI 555 (703)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876553 2489999999987 5999999
Q ss_pred hcCCC---CCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcC
Q 005314 556 AYGKE---GNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSA 628 (703)
Q Consensus 556 ~~g~~---~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSa 628 (703)
.++.. ...++++ +.++++..++ +........+||||||||++|||||+.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGL-----------TEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCC-----------HHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 87511 1233322 3344444433 3333445678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHh
Q 005314 629 LDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 629 LD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
||+.+.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|++|+|++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 3789999999999875 59999999999999999866654
No 273
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-41 Score=343.91 Aligned_cols=228 Identities=29% Similarity=0.458 Sum_probs=187.3
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-C----CCCeEEECCeeCCCCCHHH
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-P----DTGHITLDGVEIQKLQLKW 532 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-p----~~G~I~idG~di~~~~~~~ 532 (703)
++++|++..|+... ...+++|+||+|++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|+|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 3579999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred Hh----cceEEEccCCCC-Ccc--cHH----HHHhcCCCCCC---CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCC
Q 005314 533 LR----QQMGLVSQEPVL-FND--TVR----VNIAYGKEGNA---TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQ 598 (703)
Q Consensus 533 lR----~~i~~V~Qe~~L-F~g--TIr----eNI~~g~~~~~---t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 598 (703)
+| +.|++|+|||.- ||- ||. |-+........ -.+++.++++.+++.+- +..+.....+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 43 599999999852 442 343 33433211000 12356667777766432 1234467799
Q ss_pred CChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEE
Q 005314 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIA 675 (703)
Q Consensus 599 LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Iv 675 (703)
||||||||+.||-||+.+|++||-||||+|||..+.++|.+-|+++.+ +.|+|+|||++..+. .||||+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998764 889999999999875 59999999999999
Q ss_pred EecChhHHhccCCcHHHHH
Q 005314 676 EKGKHETLVHVKDGIYASL 694 (703)
Q Consensus 676 e~Gth~eLl~~~~g~Y~~l 694 (703)
|.|+-+++.+++.-.|.+.
T Consensus 234 E~g~~~~i~~~P~HPYT~~ 252 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRG 252 (316)
T ss_pred EeCCHHHHhcCCCChHHHH
Confidence 9999999998777778764
No 274
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=384.34 Aligned_cols=218 Identities=26% Similarity=0.405 Sum_probs=180.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~ 536 (703)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998887654 4568
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCC-----C---CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEG-----N---ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~-----~---~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
|+||+|++.+|.. |++||+.++... . .+.++..+ .+.+.++.+ |++........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999998875 999999886211 0 01112111 122333333 333333444568999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhc
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
+|||||+.+|+||||||||++||+.+...+.+.|.++. +++|+|+|||++..+. .||+|++|++|+|++.|+.+++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999998864 4789999999999986 599999999999999999887653
No 275
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-40 Score=324.93 Aligned_cols=220 Identities=27% Similarity=0.417 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~ 536 (703)
-++++||+-.|.. .++|+++||++++||+++++|+||+||||+++.|+|+.+|.+|+|.++|.||+...+.. .|.-
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999973 57999999999999999999999999999999999999999999999999999998664 7899
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
|+||||.-.+|.. ||+||+.+|.. ...+++- .....++.-+-+| -+......++.+|||||+|-+||||||+.
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~-~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAY-ARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhh-ccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 9999999999976 99999999832 1111011 1111222223333 34555667899999999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
+|++|+|||||.+|-|.--+.|.++|.++.+ +-|+++|-++.... +-||+-|||++|+|+.+|+-+||.+.
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999874 55999999999865 67999999999999999999999874
No 276
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-41 Score=313.79 Aligned_cols=194 Identities=33% Similarity=0.545 Sum_probs=171.4
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHH
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVR 552 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIr 552 (703)
+.++|+++||++.+||++||.||||||||||++.++-+..|++|++++.|.|+.+++++.+|.+|+|+.|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC---CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCC
Q 005314 553 VNIAYGK---EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSAL 629 (703)
Q Consensus 553 eNI~~g~---~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaL 629 (703)
||+.|-- ....+.+...+-++.+++. ++.+..+-.+||||+||||||+|-|---|+||||||+||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9998751 1123344444444444443 45566788999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCceEEEEccCchH-HhhcCEEEEEeCCEEEE
Q 005314 630 DAESERVIQDALERVM--VGRTTVVIAHRLST-IRDADLIAVVKNGVIAE 676 (703)
Q Consensus 630 D~~se~~v~~~l~~~~--~~rT~IvIaHrlst-i~~aD~I~vl~~G~Ive 676 (703)
|+.+.+.|.+.|.++- +++.++.|||+... ++.||+++-+..|++-|
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999998865 47899999999987 89999999999987644
No 277
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.9e-41 Score=335.73 Aligned_cols=196 Identities=21% Similarity=0.347 Sum_probs=169.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 789999999973 46999999999999999999999999999999999999999999999999997654 45678999
Q ss_pred EEccCCCCCc-ccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 539 LVSQEPVLFN-DTVRVNIAYGKE--GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 539 ~V~Qe~~LF~-gTIreNI~~g~~--~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
|++|++.+|. .|++|||.++.. ...+++++.++++..++.++.. ....+||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 599999987631 1134566777888777765442 2356899999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEE
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVV 669 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl 669 (703)
+|++|||||||++||+++...+.+.|.++. +++|+|+|||++..+. ..+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 4789999999999995 46677766
No 278
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-41 Score=389.97 Aligned_cols=227 Identities=27% Similarity=0.396 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC----------
Q 005314 458 DIEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ---------- 526 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~---------- 526 (703)
-|+++||+++|+... ..++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996421 347999999999999999999999999999999999999999999999997552
Q ss_pred CCCH---HHHh-cceEEEccCC--CCCc-ccHHHHHhcCCC--CCCCHH----HHHHHHHHhcHHHHHHHhhccccchhc
Q 005314 527 KLQL---KWLR-QQMGLVSQEP--VLFN-DTVRVNIAYGKE--GNATEA----EVLAAAELANAHQFISSLKQGYDTIVG 593 (703)
Q Consensus 527 ~~~~---~~lR-~~i~~V~Qe~--~LF~-gTIreNI~~g~~--~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vG 593 (703)
+.+. ..+| ++||||+|+| .++. .|++|||.++.. ...+.. ++.++++..++. + .+....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~-------~-~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIP-------E-AQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC-------C-hhhHHh
Confidence 2232 2344 5899999998 5775 599999987521 012222 333444443331 1 022345
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-C-CceEEEEccCchHHh-hcCEEEEEe
Q 005314 594 ERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-V-GRTTVVIAHRLSTIR-DADLIAVVK 670 (703)
Q Consensus 594 e~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~-~rT~IvIaHrlsti~-~aD~I~vl~ 670 (703)
....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. + ++|+|+|||++..+. .||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 5677899999999999999999999999999999999999999999999875 3 789999999999885 599999999
Q ss_pred CCEEEEecChhHHhccCCcHHH
Q 005314 671 NGVIAEKGKHETLVHVKDGIYA 692 (703)
Q Consensus 671 ~G~Ive~Gth~eLl~~~~g~Y~ 692 (703)
+|+|++.|+.+++...+...|.
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~~ 265 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPYT 265 (623)
T ss_pred CCeecccCCHHHhhcCCCChhh
Confidence 9999999999998764333443
No 279
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.4e-41 Score=383.65 Aligned_cols=227 Identities=28% Similarity=0.442 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCC--------CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC
Q 005314 458 DIEFQHITFKYPAR--------PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ 529 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~--------~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~ 529 (703)
-|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||+++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999631 1257999999999999999999999999999999999998 59999999999998776
Q ss_pred HH---HHhcceEEEccCC--CCCc-ccHHHHHhcCCC---CCCCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCC
Q 005314 530 LK---WLRQQMGLVSQEP--VLFN-DTVRVNIAYGKE---GNATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQL 599 (703)
Q Consensus 530 ~~---~lR~~i~~V~Qe~--~LF~-gTIreNI~~g~~---~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~L 599 (703)
.. .+|++|+||+|++ .+|. .|++||+.++.. ...+..+.. ..+.+++..+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE-----QQVIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHH-----HHHHHHHHHc--CCCHHHHhcCCccC
Confidence 54 3578899999998 3665 599999987521 011111111 1122333333 343 2234556789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEE
Q 005314 600 SGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAE 676 (703)
Q Consensus 600 SGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive 676 (703)
|||||||++|||||+.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|+|++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 7899999999998864 99999999999999
Q ss_pred ecChhHHhccCCcHHH
Q 005314 677 KGKHETLVHVKDGIYA 692 (703)
Q Consensus 677 ~Gth~eLl~~~~g~Y~ 692 (703)
.|+.+++++.+.-.|.
T Consensus 507 ~~~~~~~~~~~~~~~~ 522 (529)
T PRK15134 507 QGDCERVFAAPQQEYT 522 (529)
T ss_pred EcCHHHHhcCCCChHH
Confidence 9999999864333443
No 280
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.6e-41 Score=379.55 Aligned_cols=217 Identities=28% Similarity=0.397 Sum_probs=179.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~ 536 (703)
-|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999997765544 4678
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCC-----CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEG-----NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~-----~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
++||+|++.+|.. |++|||.++... ..+..+..+ .+.++++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988865 999999987311 112222211 122334443 333333445568999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHh
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
|||+.+|++|||||||++||+++.+.+.+.|.++. +++|+|+|||++..+. .||+|++|++|+|++.|+.+++.
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999998864 4789999999999885 59999999999999999887764
No 281
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-40 Score=386.61 Aligned_cols=204 Identities=30% Similarity=0.420 Sum_probs=174.4
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC--CCeEEECCeeCCCCCHHHHhcceEEEccCCCCCc-c
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD--TGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-D 549 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~--~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~-g 549 (703)
++++|+|+|++++|||++||+||||||||||+++|+|+.+|+ +|+|.+||+++. ...++++|||+|++.+|. .
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcC
Confidence 356999999999999999999999999999999999999985 899999999874 245678999999999996 5
Q ss_pred cHHHHHhcCC----CCCCCHHHHHHHHHHhcHHHHHHH--hhccccchhcCC-CCCCChhHHHHHHHHHHhccCCCEEEe
Q 005314 550 TVRVNIAYGK----EGNATEAEVLAAAELANAHQFISS--LKQGYDTIVGER-GIQLSGGQKQRVAIARAMVKAPKILLL 622 (703)
Q Consensus 550 TIreNI~~g~----~~~~t~~ei~~A~~~a~l~~~I~~--Lp~G~dT~vGe~-G~~LSGGQkQRiaIARAllk~p~ILlL 622 (703)
|++|||.++. +.+.++++..+. ++++++. |++..||.+|++ ...||||||||++|||||+++|+||||
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlL 230 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 230 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEE
Confidence 9999998852 113344443322 2334443 455669999864 678999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeCCEEEEecChhHHhc
Q 005314 623 DEATSALDAESERVIQDALERVM-VGRTTVVIAHRLST--IRDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 623 DEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlst--i~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||||+||+.++..+.+.|+++. +|+|+|+++|+++. .+.+|+|++|++|++++.|+++++.+
T Consensus 231 DEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 231 DEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999999876 58999999999984 46799999999999999999999864
No 282
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1e-40 Score=342.43 Aligned_cols=195 Identities=27% Similarity=0.411 Sum_probs=160.0
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEc-cCCCCC-cccH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVS-QEPVLF-NDTV 551 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~-Qe~~LF-~gTI 551 (703)
+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++... ...+|++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 356788999997 667776 5699
Q ss_pred HHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHH--HhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcC
Q 005314 552 RVNIAYGKE-GNATEAEVLAAAELANAHQFIS--SLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSA 628 (703)
Q Consensus 552 reNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~--~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSa 628 (703)
+||+.+... ...+.++..+.+. +.++ .|++..++. ..+||||||||++||||++.+|++|||||||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~gl~~~~~~~----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLD-----ELSELLDLEELLDTP----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH-----HHHHHcCChhHhcCC----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999976521 1233333322211 1222 223333444 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEec
Q 005314 629 LDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKG 678 (703)
Q Consensus 629 LD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~G 678 (703)
||+++.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 184 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999998753 7899999999998755 9999999999999875
No 283
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.8e-41 Score=366.25 Aligned_cols=228 Identities=29% Similarity=0.452 Sum_probs=190.2
Q ss_pred cEEEEEEEEEcCCCCC-cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC----CCeEEECCeeCCCCCHHH
Q 005314 458 DIEFQHITFKYPARPD-VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD----TGHITLDGVEIQKLQLKW 532 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~-~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~----~G~I~idG~di~~~~~~~ 532 (703)
-++++|++..|..... .++++|+||+|.+||++||||+|||||||++..|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975421 35999999999999999999999999999999999999988 899999999999998765
Q ss_pred Hh----cceEEEccCCC-CCcc--cHHHHHh----cCCC--CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCC
Q 005314 533 LR----QQMGLVSQEPV-LFND--TVRVNIA----YGKE--GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQL 599 (703)
Q Consensus 533 lR----~~i~~V~Qe~~-LF~g--TIreNI~----~g~~--~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~L 599 (703)
+| +.|++|||+|. .||. ||.+-|. .... .+.-.++..+.++.+++ |+--.- .....+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl-------~~~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGL-------PDPERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCC-------CChhhh--ccCCccc
Confidence 53 78999999985 6775 6655552 2211 11123445555666655 333222 5578999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCEEEE
Q 005314 600 SGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAE 676 (703)
Q Consensus 600 SGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive 676 (703)
|||||||+.||+||.+||++||+||||.|||+.+.++|.+.|+++. .|-++|+|||++..+.. ||||+||++|+|||
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 48899999999999855 99999999999999
Q ss_pred ecChhHHhccCCcHHHHH
Q 005314 677 KGKHETLVHVKDGIYASL 694 (703)
Q Consensus 677 ~Gth~eLl~~~~g~Y~~l 694 (703)
.|+-+++++++.-.|.+-
T Consensus 236 ~G~~~~i~~~p~hpYT~~ 253 (539)
T COG1123 236 TGPTEEILSNPQHPYTRG 253 (539)
T ss_pred ecCHHHHHhccCCcccHH
Confidence 999999998877778764
No 284
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-40 Score=335.00 Aligned_cols=195 Identities=25% Similarity=0.330 Sum_probs=168.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .. +|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 789999999973 469999999999999999999999999999999999999999999999998753 22 888999
Q ss_pred EEccCCCCC-cccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 539 LVSQEPVLF-NDTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 539 ~V~Qe~~LF-~gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
|++|++.+| +.|++||+.+... ....++++.++++..++.++... ...+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-----------PFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999988775 6799999987521 12345567788888777654322 2347999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhhcCEEEEEeC
Q 005314 617 PKILLLDEATSALDAESERVIQDALERV-MVGRTTVVIAHRLSTIRDADLIAVVKN 671 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~-~~~rT~IvIaHrlsti~~aD~I~vl~~ 671 (703)
|++|||||||++||+.+.+.+.+.|.+. .+++|+|+|||++..+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999875 357999999999999998 99998854
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=378.18 Aligned_cols=214 Identities=25% Similarity=0.362 Sum_probs=180.1
Q ss_pred EEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH-HHHhcceEE
Q 005314 461 FQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL-KWLRQQMGL 539 (703)
Q Consensus 461 ~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~-~~lR~~i~~ 539 (703)
++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++...+. +.+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999973 469999999999999999999999999999999999999999999999999976654 456788999
Q ss_pred EccCCCCCc-ccHHHHHhcCCCC--C--CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 540 VSQEPVLFN-DTVRVNIAYGKEG--N--ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 540 V~Qe~~LF~-gTIreNI~~g~~~--~--~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
|+|++.+|. .|++||+.++... . .+.++..+ .+.++++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 5999999986311 1 12222222 233445554 5555555667899999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHh
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||++..+. .||+|++|++|+|++.|+.+++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999998864 4789999999999885 59999999999999999987763
No 286
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=377.73 Aligned_cols=212 Identities=29% Similarity=0.425 Sum_probs=176.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH-HHHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL-KWLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~-~~lR~~ 536 (703)
.|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999973 469999999999999999999999999999999999999999999999999976553 457889
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCC---C-CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEG---N-ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~---~-~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|+||+|++.+|.. |++||+.++... . .+..+..+ .+.++++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999998875 999999986311 1 12222211 123334443 3333334456789999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecC
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gt 679 (703)
||+.+|++|||||||++||+++.+.+.+.|.++. +++|+|+|||++..+.. ||+|++|++|+|++.++
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999998864 47899999999998854 99999999999997765
No 287
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.2e-40 Score=377.58 Aligned_cols=211 Identities=22% Similarity=0.300 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3899999999974 3599999999999999999999999999999999999999999999999988877777788899
Q ss_pred EEEccCCCC---------CcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 538 GLVSQEPVL---------FNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 538 ~~V~Qe~~L---------F~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
++|+|++.+ +..|++||+.++ . ..++++.++++..++.+. ......+||||||||++
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-V--KDPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTL 145 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccc-h--hHHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHH
Confidence 999998753 246999998765 2 123456666666555433 23455789999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||||+.+|++|||||||++||+++.+.+.+.|.++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.+++++
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998864 37899999999998865 99999999999999999988875
No 288
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1e-40 Score=333.42 Aligned_cols=194 Identities=19% Similarity=0.297 Sum_probs=165.0
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999973 46999999999999999999999999999999999999999999999999998765 46788999
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 539 LVSQEPVLFN-DTVRVNIAYGKEG-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 539 ~V~Qe~~LF~-gTIreNI~~g~~~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
|++|++.+|. .|++||+.++... ...++++.++++..++.+++. ....+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 9999999886 6999999876211 112345778888888766543 23367999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhhcCEEEE
Q 005314 617 PKILLLDEATSALDAESERVIQDALERV-MVGRTTVVIAHRLSTIRDADLIAV 668 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~-~~~rT~IvIaHrlsti~~aD~I~v 668 (703)
|++|||||||++||+.+.+.+.+.|.++ .+++|+|+|||+...+. +|+.+.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999999886 45789999999986543 355543
No 289
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-41 Score=337.07 Aligned_cols=196 Identities=33% Similarity=0.491 Sum_probs=172.0
Q ss_pred cEEEEEEEEEcCCCC------CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH
Q 005314 458 DIEFQHITFKYPARP------DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK 531 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~------~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~ 531 (703)
-++++|++..|+.+. ...+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|+|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 378999999998532 147899999999999999999999999999999999999999999999999988776
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHH-HHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 532 WLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQ-FISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~-~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
. +.-.+++.+.++.+|+.+ +.. ....+|||||||||+||
T Consensus 82 --------------------------~---~~~~~~v~elL~~Vgl~~~~~~-----------ryPhelSGGQrQRi~IA 121 (268)
T COG4608 82 --------------------------K---EERRERVLELLEKVGLPEEFLY-----------RYPHELSGGQRQRIGIA 121 (268)
T ss_pred --------------------------h---hHHHHHHHHHHHHhCCCHHHhh-----------cCCcccCchhhhhHHHH
Confidence 1 122457888888888655 333 34589999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhccC
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHVK 687 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~ 687 (703)
|||.-+|+++++||||||||.-..++|.+-|..+. .+-|.++|||+++.++. ||||+||..|+|||.|+-+++.+++
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 99999999999999999999999999999997654 37899999999999987 9999999999999999999999887
Q ss_pred CcHHHHHH
Q 005314 688 DGIYASLV 695 (703)
Q Consensus 688 ~g~Y~~l~ 695 (703)
.-.|.+..
T Consensus 202 ~HpYTk~L 209 (268)
T COG4608 202 LHPYTKAL 209 (268)
T ss_pred CCHHHHHH
Confidence 77887643
No 290
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.4e-41 Score=311.05 Aligned_cols=212 Identities=32% Similarity=0.462 Sum_probs=179.5
Q ss_pred cEEEEEEEEEcCCC-CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH---HH
Q 005314 458 DIEFQHITFKYPAR-PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK---WL 533 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~-~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~---~l 533 (703)
-|++++++...+.. ....||++++|.|++||++|||||||||||||+.++.|+-+|++|+|.+.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888998887643 245799999999999999999999999999999999999999999999999999999844 45
Q ss_pred h-cceEEEccCCCCC-cccHHHHHhcCC--CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 534 R-QQMGLVSQEPVLF-NDTVRVNIAYGK--EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 534 R-~~i~~V~Qe~~LF-~gTIreNI~~g~--~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
| +++|+|+|..+|. +.|-.||+..-. ..+.+.+.. ..+.+++... |+.-.+.....|||||+.||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~------~~A~~lL~~v--GLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSR------AGAKALLEAV--GLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHH------HHHHHHHHHh--CcccccccCccccCchHHHHHHH
Confidence 5 7999999999986 569999997641 111122221 1233344444 67777778889999999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCEEEEe
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEK 677 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~ 677 (703)
|||+.-.|+||+-||||-+||.+|-.+|.+-+.++. .|-|.|+|||+++...+|||++.|.+|+|++.
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999997654 47899999999999999999999999999863
No 291
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3e-40 Score=377.57 Aligned_cols=221 Identities=29% Similarity=0.426 Sum_probs=180.5
Q ss_pred cEEEEEEEEEcCCC-CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCCCCHH
Q 005314 458 DIEFQHITFKYPAR-PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQKLQLK 531 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~-~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~~~~~ 531 (703)
-|+++||+++|+.+ .+.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999732 135799999999999999999999999999999999999987 799999999999887654
Q ss_pred H---Hh-cceEEEccCCC--CCc-ccHHHHHhcCC--CCCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCC
Q 005314 532 W---LR-QQMGLVSQEPV--LFN-DTVRVNIAYGK--EGNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQ 598 (703)
Q Consensus 532 ~---lR-~~i~~V~Qe~~--LF~-gTIreNI~~g~--~~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 598 (703)
. +| ++||||+|++. ++. .|+++|+.++. ....+ .+++.++++..++.++. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3 34 68999999985 443 59999986421 00112 23445555555442211 112345678
Q ss_pred CChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCEEE
Q 005314 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIA 675 (703)
Q Consensus 599 LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~G~Iv 675 (703)
||||||||++|||||+.+|++||||||||+||+++.+.+.+.|.++. .++|+|+|||++..+. .||+|++|++|+|+
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 3789999999999886 59999999999999
Q ss_pred EecChhHHhcc
Q 005314 676 EKGKHETLVHV 686 (703)
Q Consensus 676 e~Gth~eLl~~ 686 (703)
+.|+.++++..
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998753
No 292
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=5.9e-41 Score=388.68 Aligned_cols=220 Identities=24% Similarity=0.364 Sum_probs=185.9
Q ss_pred CcEEEEEEEEEcCCCC------CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC---CCeEEECCeeCCC
Q 005314 457 GDIEFQHITFKYPARP------DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD---TGHITLDGVEIQK 527 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~------~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~---~G~I~idG~di~~ 527 (703)
.+++|.++. +++..+ ++++|+|+|++|+|||.+||+||||||||||+++|.|..+|. +|+|.+||.++.
T Consensus 16 ~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~- 93 (617)
T TIGR00955 16 QDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID- 93 (617)
T ss_pred ccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-
Confidence 467777776 654332 567999999999999999999999999999999999999885 799999999875
Q ss_pred CCHHHHhcceEEEccCCCCCc-ccHHHHHhcCCC----CCCCHHHHHHHHHHhcHHHHHHH--hhccccchhcCC--CCC
Q 005314 528 LQLKWLRQQMGLVSQEPVLFN-DTVRVNIAYGKE----GNATEAEVLAAAELANAHQFISS--LKQGYDTIVGER--GIQ 598 (703)
Q Consensus 528 ~~~~~lR~~i~~V~Qe~~LF~-gTIreNI~~g~~----~~~t~~ei~~A~~~a~l~~~I~~--Lp~G~dT~vGe~--G~~ 598 (703)
...+|+.+|||+|++.+|. .||+|||.|+.. .+.+.++. ...+++.++. |++..||.||+. +..
T Consensus 94 --~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~ 166 (617)
T TIGR00955 94 --AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKG 166 (617)
T ss_pred --HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCC
Confidence 4678999999999999995 599999998631 12233322 2234445554 566889999984 478
Q ss_pred CChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCch--HHhhcCEEEEEeCCEEE
Q 005314 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLS--TIRDADLIAVVKNGVIA 675 (703)
Q Consensus 599 LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrls--ti~~aD~I~vl~~G~Iv 675 (703)
||||||||++|||||+++|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|+++ ..+.+|+|++|++|+++
T Consensus 167 LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v 246 (617)
T TIGR00955 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA 246 (617)
T ss_pred cCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE
Confidence 99999999999999999999999999999999999999999999875 4899999999996 35789999999999999
Q ss_pred EecChhHHhc
Q 005314 676 EKGKHETLVH 685 (703)
Q Consensus 676 e~Gth~eLl~ 685 (703)
+.|+.+++++
T Consensus 247 ~~G~~~~~~~ 256 (617)
T TIGR00955 247 YLGSPDQAVP 256 (617)
T ss_pred EECCHHHHHH
Confidence 9999998853
No 293
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.7e-40 Score=340.05 Aligned_cols=226 Identities=32% Similarity=0.473 Sum_probs=192.0
Q ss_pred CcEEEEEEEEEcCCCC--------CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC
Q 005314 457 GDIEFQHITFKYPARP--------DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL 528 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~--------~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~ 528 (703)
.-++.+||...||-++ ...+.+++||++++||+++|||+||||||||...|+|+.++. |+|.++|.++..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 3589999999997432 135789999999999999999999999999999999999777 9999999999999
Q ss_pred CHHH---HhcceEEEccCCCC-C--cccHHHHHhcCC---CCCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCC
Q 005314 529 QLKW---LRQQMGLVSQEPVL-F--NDTVRVNIAYGK---EGNATE----AEVLAAAELANAHQFISSLKQGYDTIVGER 595 (703)
Q Consensus 529 ~~~~---lR~~i~~V~Qe~~L-F--~gTIreNI~~g~---~~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~ 595 (703)
+.+. +|+++-+|+|||+= + ..||.+=|.=|. .+..++ +.+.+|++.+|++.-.. ...
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RY 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRY 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcC
Confidence 8654 78999999999972 3 347777776552 223333 45777777776654332 356
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCC
Q 005314 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKNG 672 (703)
Q Consensus 596 G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~G 672 (703)
...+|||||||||||||++-+|++++|||||||||..-.++|.+-|+.+- .+-+-++|+|+|..++. ||+++||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 78999999999999999999999999999999999999999999998753 47799999999999986 9999999999
Q ss_pred EEEEecChhHHhccCCcHHHH
Q 005314 673 VIAEKGKHETLVHVKDGIYAS 693 (703)
Q Consensus 673 ~Ive~Gth~eLl~~~~g~Y~~ 693 (703)
||||+|+-+++.++|.-.|.+
T Consensus 504 kiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 504 KIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EEeeeCCHHHHhcCCCcHHHH
Confidence 999999999999988888876
No 294
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.5e-40 Score=337.01 Aligned_cols=201 Identities=27% Similarity=0.370 Sum_probs=162.2
Q ss_pred EEEEEEEEEcCCC---C-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC--Ce--eCCCCCH
Q 005314 459 IEFQHITFKYPAR---P-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD--GV--EIQKLQL 530 (703)
Q Consensus 459 I~~~~vsF~Y~~~---~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id--G~--di~~~~~ 530 (703)
|+++||+++|+.. . ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+| |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2469999999999999999999999999999999999999999999998 43 6666665
Q ss_pred HH---H-hcceEEEccCCCCCcc-cHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 531 KW---L-RQQMGLVSQEPVLFND-TVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 531 ~~---l-R~~i~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
.. + +++++||+|++.+|.. |++|||.+... ...+. +++.++++..++.+.. ......+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 43 3 4689999999988764 99999976411 11222 2333334333332211 123567899
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEE
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVV 669 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl 669 (703)
||||||++|||||+++|++|||||||++||+++.+.+.+.|.++. +++|+|+|||++..+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998865 4789999999999885 69999876
No 295
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.4e-40 Score=333.62 Aligned_cols=197 Identities=21% Similarity=0.283 Sum_probs=165.0
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++|++++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 5899999999974 4699999999999999999999999999999999999999999999999998753 346689
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC-CC-CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEG-NA-TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~-~~-t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
+|++|++.+|.+ |++||+.++... .. .++.+.++++..++ ++.+++ ...+||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~----~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGL-------AGYEDT----LVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCC-------hhhccC----ChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 999999775211 11 22333444444433 223333 44689999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeC
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKN 671 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~ 671 (703)
++|++|||||||++||+++.+.+.+.|.+.. +++|+|++||+++.+. .||+|++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998753 4789999999999885 5999999864
No 296
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.3e-40 Score=335.75 Aligned_cols=195 Identities=25% Similarity=0.414 Sum_probs=164.7
Q ss_pred EEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCC---CcccHHHHHhcC
Q 005314 482 LAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL---FNDTVRVNIAYG 558 (703)
Q Consensus 482 l~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~L---F~gTIreNI~~g 558 (703)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++. ..|++++||+|++.+ |..|++|||.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357889999999977 457999999876
Q ss_pred CC--------C-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCC
Q 005314 559 KE--------G-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSAL 629 (703)
Q Consensus 559 ~~--------~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaL 629 (703)
.. + ...++++.++++..++.++. .....+||||||||++||||++++|++|||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 0 11234567777777665443 2344579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhccCCcHHHHHH
Q 005314 630 DAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHVKDGIYASLV 695 (703)
Q Consensus 630 D~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~ 695 (703)
|+.+.+.+.+.|.++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+ +..+.+++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~--~~~~~~~~ 209 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD--PAPWMTTF 209 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC--hHHHHHHh
Confidence 9999999999998875 4789999999999875 59999999 899999999999875 34455555
No 297
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=4.5e-40 Score=383.02 Aligned_cols=220 Identities=30% Similarity=0.486 Sum_probs=190.1
Q ss_pred cEEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH---
Q 005314 458 DIEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL--- 533 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l--- 533 (703)
.|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+++...+.+.+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999997421 2479999999999999999999999999999999999999999999999999999887654
Q ss_pred -hcceEEEccCCCCCc-ccHHHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 534 -RQQMGLVSQEPVLFN-DTVRVNIAYGKEG-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 534 -R~~i~~V~Qe~~LF~-gTIreNI~~g~~~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
|+.++|++|++.+|. .|+.||+.++... ..+.++ ....++++++.+ |++..+.....+|||||+||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 678999999999997 5999999875210 111111 122345556665 666667777789999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHh
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
|||+++|++|||||||++||+++.+.+.+.|.++. +++|+|+|||++..++.||++++|++|+++++|+.+|..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 489999999999999999999999999999999999876
No 298
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-40 Score=328.73 Aligned_cols=190 Identities=21% Similarity=0.369 Sum_probs=162.0
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|+. +.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.... ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999963 34554 99999999999999999999999999999999999999999999987643 45699
Q ss_pred EEccCCC-CCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 005314 539 LVSQEPV-LFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAP 617 (703)
Q Consensus 539 ~V~Qe~~-LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p 617 (703)
|++|++. +|+.|++|||.++......++++.++++..++.++. ...+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLL-----------DEKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhh-----------ccChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999875 478899999988632112345667777777665543 3456789999999999999999999
Q ss_pred CEEEeeccCcCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhhcCEEE
Q 005314 618 KILLLDEATSALDAESERVIQDALERV-MVGRTTVVIAHRLSTIRDADLIA 667 (703)
Q Consensus 618 ~ILlLDEaTSaLD~~se~~v~~~l~~~-~~~rT~IvIaHrlsti~~aD~I~ 667 (703)
++|||||||++||+.+.+.+.+.|... .+++|+|+|||+++.++.||.|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999999753 46899999999999999999874
No 299
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.9e-40 Score=371.84 Aligned_cols=215 Identities=27% Similarity=0.421 Sum_probs=177.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC--CCCeEEECCeeCCCCCHHH-Hhc
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP--DTGHITLDGVEIQKLQLKW-LRQ 535 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p--~~G~I~idG~di~~~~~~~-lR~ 535 (703)
|+++||+++|++ .++|+|+||++++|+++||+||||||||||+++|+|+++| ++|+|.++|+++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 4699999999999999999999999999999999999987 7999999999998877654 567
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCCCC-----CCCHHHHHHHHHHhcHHHHHHHhhccccchh-cCCCCCCChhHHHHHH
Q 005314 536 QMGLVSQEPVLFND-TVRVNIAYGKEG-----NATEAEVLAAAELANAHQFISSLKQGYDTIV-GERGIQLSGGQKQRVA 608 (703)
Q Consensus 536 ~i~~V~Qe~~LF~g-TIreNI~~g~~~-----~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~v-Ge~G~~LSGGQkQRia 608 (703)
+|+||+|++.+|.. |++||+.++... ..+.++..+ .++++++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 89999999988875 999999987311 012222211 123344443 332211 1234579999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHH
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eL 683 (703)
|||||+.+|+||||||||++||+++.+.+.+.|.++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.+++
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999998764 47899999999999865 999999999999999886654
No 300
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.6e-40 Score=328.27 Aligned_cols=176 Identities=34% Similarity=0.499 Sum_probs=148.6
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC--CCHHHHhcceEEEccCC--CCCc
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK--LQLKWLRQQMGLVSQEP--VLFN 548 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~--~~~~~lR~~i~~V~Qe~--~LF~ 548 (703)
+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .....+|+.++||+|+| .+|.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 3569999999999999999999999999999999999999999999999999852 23457788999999998 5788
Q ss_pred ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEee
Q 005314 549 DTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLD 623 (703)
Q Consensus 549 gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLD 623 (703)
.|++|||.++.. ...++ +++.++++..++.++... ...+||||||||++|||||+++|++||||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999988521 11222 345556666666544433 44689999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH
Q 005314 624 EATSALDAESERVIQDALERVM-VGRTTVVIAHRLST 659 (703)
Q Consensus 624 EaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlst 659 (703)
|||++||+.+.+.+.+.|.++. +++|+|+|||++..
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999999999998864 47899999999864
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.9e-40 Score=375.17 Aligned_cols=222 Identities=23% Similarity=0.427 Sum_probs=177.4
Q ss_pred cEEEEEEEEEcCC--CCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC-Cee---CCCCC--
Q 005314 458 DIEFQHITFKYPA--RPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD-GVE---IQKLQ-- 529 (703)
Q Consensus 458 ~I~~~~vsF~Y~~--~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id-G~d---i~~~~-- 529 (703)
.|+++||+++|+. +.+.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 113579999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcceEEEccCCCCCcc-cHHHHHhcCCCCCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 530 -LKWLRQQMGLVSQEPVLFND-TVRVNIAYGKEGNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 530 -~~~lR~~i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
...+|++|+||+|++.+|.. |++||+.++....... +++.++++..++.+. -.+........+|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 23567889999999988874 9999998641101111 223333333333110 00012345567899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecCh
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth 680 (703)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|++++.|+.
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988743 7899999999998865 999999999999999999
Q ss_pred hHHhc
Q 005314 681 ETLVH 685 (703)
Q Consensus 681 ~eLl~ 685 (703)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88764
No 302
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=358.31 Aligned_cols=213 Identities=23% Similarity=0.315 Sum_probs=174.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.++++|++|+|+++..+++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999865445799999999999999999999999999999999999999999999999752
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFN-DTVRVNIAYGKE-GNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~-gTIreNI~~g~~-~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
++.+.+.++. .|++|||.++.. ...+.++ +.++++..++.+++. ....+||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHH
Confidence 1223344443 599999987421 1233333 334555555554433 345789999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhccCCc
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHVKDG 689 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~~g 689 (703)
||+.+|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++... -.
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~-~~ 235 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH-YD 235 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh-HH
Confidence 9999999999999999999999999999998864 47899999999999865 999999999999999999999875 44
Q ss_pred HHHHHH
Q 005314 690 IYASLV 695 (703)
Q Consensus 690 ~Y~~l~ 695 (703)
.|.+.+
T Consensus 236 ~~~~~~ 241 (549)
T PRK13545 236 EFLKKY 241 (549)
T ss_pred HHHHHH
Confidence 454444
No 303
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=338.38 Aligned_cols=213 Identities=20% Similarity=0.308 Sum_probs=173.4
Q ss_pred cEEEEEEEEEcCCC-----------------CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE
Q 005314 458 DIEFQHITFKYPAR-----------------PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL 520 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~-----------------~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i 520 (703)
+|+++||+.+|... ...++|+++||+|+||+++||+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 57777776665321 1346899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEccCCCCCc-ccHHHHHhcCC-CCCCCHHHHHH----HHHHhcHHHHHHHhhccccchhcC
Q 005314 521 DGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTVRVNIAYGK-EGNATEAEVLA----AAELANAHQFISSLKQGYDTIVGE 594 (703)
Q Consensus 521 dG~di~~~~~~~lR~~i~~V~Qe~~LF~-gTIreNI~~g~-~~~~t~~ei~~----A~~~a~l~~~I~~Lp~G~dT~vGe 594 (703)
+|. +++++|++.++. .|++|||.++. ....+.++..+ +++..+ ++..+..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSE-----------LGEFIYQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcC
Confidence 994 567888887664 59999998742 11233444433 233333 3334445
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCC
Q 005314 595 RGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNG 672 (703)
Q Consensus 595 ~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G 672 (703)
...+||||||||++||||++.+|+||||||||++||+++.+.+.+.|.++. .++|+|+|||++..+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 677899999999999999999999999999999999999999999998764 47899999999999865 9999999999
Q ss_pred EEEEecChhHHhccCCcHHHHHH
Q 005314 673 VIAEKGKHETLVHVKDGIYASLV 695 (703)
Q Consensus 673 ~Ive~Gth~eLl~~~~g~Y~~l~ 695 (703)
+|++.|+.+++++. -+.|.+.+
T Consensus 220 ~i~~~g~~~~~~~~-~~~~~~~~ 241 (264)
T PRK13546 220 KLKDYGELDDVLPK-YEAFLNDF 241 (264)
T ss_pred EEEEeCCHHHHHHH-hHHHHHHH
Confidence 99999999999886 44455544
No 304
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.5e-40 Score=374.73 Aligned_cols=214 Identities=28% Similarity=0.498 Sum_probs=174.9
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC--CCCCCeEEEC---------------
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFY--DPDTGHITLD--------------- 521 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y--~p~~G~I~id--------------- 521 (703)
|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+. .|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 46999999999999999999999999999999999996 7999999997
Q ss_pred --------CeeCC-------CCC---HHHHhcceEEEccC-CCCCc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhc
Q 005314 522 --------GVEIQ-------KLQ---LKWLRQQMGLVSQE-PVLFN-DTVRVNIAYGKE-GNATE----AEVLAAAELAN 576 (703)
Q Consensus 522 --------G~di~-------~~~---~~~lR~~i~~V~Qe-~~LF~-gTIreNI~~g~~-~~~t~----~ei~~A~~~a~ 576 (703)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ...+. +++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 23568899999998 67776 599999987521 11222 23334444444
Q ss_pred HHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEc
Q 005314 577 AHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIA 654 (703)
Q Consensus 577 l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIa 654 (703)
++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|.++. .++|+|+||
T Consensus 158 -----------l~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 -----------LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred -----------ChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 3333345567899999999999999999999999999999999999999999998874 378999999
Q ss_pred cCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 655 HRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 655 Hrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|++..+. .||+|++|++|+|++.|+.++++++
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999986 5999999999999999999988653
No 305
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=332.02 Aligned_cols=472 Identities=17% Similarity=0.163 Sum_probs=333.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHH---HHHHHhHHHHHHHHHHHHHHHHHH
Q 005314 186 LAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAI---GARLSADSASVRSVVGDALGLHVQ 262 (703)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l---~~rl~~D~~~v~~~~~~~~~~~~~ 262 (703)
+..+...++.+..|.......+.+.++..-++++.++.-.-+-- .+..+.+ =+|++.|++..-..+.+....++.
T Consensus 131 ~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYki--s~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~ 208 (659)
T KOG0060|consen 131 LIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKL--SNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLK 208 (659)
T ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEe--cccccccCChHHHHhHHHHHHHHHHHHHHHhhhc
Confidence 33334445556667777777777777777777777654332211 1122221 269999999887777666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHH
Q 005314 263 NIATLFAGVIIAFEANWQLALIVLVLVPL-LVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVM 341 (703)
Q Consensus 263 ~~~~~i~~~i~~~~~~~~lalv~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~ 341 (703)
+++.++......+....++..+.+....+ -.++.....+...+...++.+...+....-.+...|.+.|..|+.+..+.
T Consensus 209 a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~ 288 (659)
T KOG0060|consen 209 APFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEH 288 (659)
T ss_pred cceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHH
Confidence 55554444433443222233443333332 22223334444445556666666777777778888999999999999998
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCCHHHHHHHH----HHHHHHHHHHH
Q 005314 342 ELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAG----KTTFQEVFRVF----FALSMAATGLS 413 (703)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g----~~s~g~~~~~~----~~~~~~~~~~~ 413 (703)
....+..+...+.....-.+.-+...+..++-++..++.+.+-+.-+..| .++..++...+ .+...+...++
T Consensus 289 ~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~ 368 (659)
T KOG0060|consen 289 QRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFG 368 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888888888877777777666666666666665555443333333333 45555554332 23333445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccC-------------CCCC------CCC-ccccCCCCcEEEEEEEEEcCCCCC
Q 005314 414 QSGILAPEASRAKSAIASVYAILDRKSKI-------------DSSD------ESG-TTIENVKGDIEFQHITFKYPARPD 473 (703)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~i~~il~~~~~~-------------~~~~------~~~-~~~~~~~~~I~~~~vsF~Y~~~~~ 473 (703)
.+..+..++.+-..-..||-++++.-.+. ..+. ..+ .........|+|++|++.-|++ .
T Consensus 369 ~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g 447 (659)
T KOG0060|consen 369 RLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-G 447 (659)
T ss_pred HHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-C
Confidence 66666667777777777777765421110 0000 000 0111123569999999999975 4
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRV 553 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIre 553 (703)
..+.+|+||+|+.|+.+.|.||||||||+|++.+.|+++-.+|++.--.+.-. +.+-||||.|+.=.||+||
T Consensus 448 ~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lfflPQrPYmt~GTLRd 519 (659)
T KOG0060|consen 448 DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFFLPQRPYMTLGTLRD 519 (659)
T ss_pred ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------CceEEecCCCCccccchhh
Confidence 56778899999999999999999999999999999999999999975321111 4689999999999999999
Q ss_pred HHhcCC------CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhc-CCCCCCChhHHHHHHHHHHhccCCCEEEeeccC
Q 005314 554 NIAYGK------EGNATEAEVLAAAELANAHQFISSLKQGYDTIVG-ERGIQLSGGQKQRVAIARAMVKAPKILLLDEAT 626 (703)
Q Consensus 554 NI~~g~------~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG-e~G~~LSGGQkQRiaIARAllk~p~ILlLDEaT 626 (703)
-|.|-. ...+++++|.+.++.+++.+.+++ -+|+|+++- +-..-||+||+||+|.||-+|.+|++-||||+|
T Consensus 520 QvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~T 598 (659)
T KOG0060|consen 520 QVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECT 598 (659)
T ss_pred eeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechh
Confidence 999862 235789999999999999887766 579998765 678899999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q 005314 627 SALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKN 671 (703)
Q Consensus 627 SaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~ 671 (703)
||+|.+.|..+.+.+++. |-|.|-|.||-|.-+.=|.++-|+.
T Consensus 599 SAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 599 SAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred hhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 999999999999999876 8999999999999999999999985
No 306
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-40 Score=371.74 Aligned_cols=220 Identities=23% Similarity=0.365 Sum_probs=180.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-CCCCeEEECCeeCCCCCH-HHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-PDTGHITLDGVEIQKLQL-KWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-p~~G~I~idG~di~~~~~-~~lR~ 535 (703)
-|+++||++.|+.+.+.++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|+++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999963223469999999999999999999999999999999999999 599999999999876543 45678
Q ss_pred ceEEEccCC---CCC-cccHHHHHhcCCCCC------CCHHHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCChhHH
Q 005314 536 QMGLVSQEP---VLF-NDTVRVNIAYGKEGN------ATEAEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLSGGQK 604 (703)
Q Consensus 536 ~i~~V~Qe~---~LF-~gTIreNI~~g~~~~------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQk 604 (703)
.++||+|++ .+| ..|+.||+.++.... .+.++ ....++++++.+ |+++ .......+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 355 469999998762100 11111 112244556655 4432 23455678999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~e 682 (703)
||++||||++.+|+||||||||++||+.+.+.+.+.|.++. +++|+|+|||++..+.. ||+|++|++|+|+..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998764 48999999999998855 99999999999999998877
Q ss_pred Hh
Q 005314 683 LV 684 (703)
Q Consensus 683 Ll 684 (703)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 64
No 307
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=9.5e-40 Score=332.58 Aligned_cols=195 Identities=28% Similarity=0.367 Sum_probs=155.5
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
+.++|++.+|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||+++... ....+
T Consensus 23 l~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~ 94 (224)
T cd03220 23 LGILGRKGEVG---EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG 94 (224)
T ss_pred hhhhhhhhhcC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc
Confidence 56677777775 35799999999999999999999999999999999999999999999999986421 11111
Q ss_pred EEccCCCCCcccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKE-GNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~-~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
...+.|++||+.++.. ...+.++ +.++++..++ ++..++ ...+||||||||++||||+
T Consensus 95 ------~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~----~~~~LSgG~~qrv~laral 157 (224)
T cd03220 95 ------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL-------GDFIDL----PVKTYSSGMKARLAFAIAT 157 (224)
T ss_pred ------CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhhhhC----ChhhCCHHHHHHHHHHHHH
Confidence 2245799999987621 1123332 3333333333 223333 3457999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEec
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKG 678 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~G 678 (703)
+++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||++..+. .||+|++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998864 4689999999999885 59999999999999876
No 308
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-39 Score=319.53 Aligned_cols=218 Identities=28% Similarity=0.489 Sum_probs=188.1
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcce
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~i 537 (703)
+++++++.+|.+ -.+++|+||++++||++||+|||||||||++|+|.|||.|++|+|.++|+||..+++.. .|.-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999973 57999999999999999999999999999999999999999999999999999999765 57789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCC-----------C--CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEGN-----------A--TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~~-----------~--t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
+--+|.+.+|.+ |+.||+..|.... . .+++..+- +.++++.+ |++-.-.+...+||+||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~-----A~~~Le~v--gL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER-----ARELLEFV--GLGELADRPAGNLSYGQ 154 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH-----HHHHHHHc--CCchhhcchhhcCChhH
Confidence 999999999976 9999999872100 0 12222222 23334443 66666677788999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecCh
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth 680 (703)
+.|+-|||||..+|++||||||.++|.++-...+.+.|+++.+ +.|+++|-|++..+.. ||||+||+.|+++.+|+.
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 9999999999999999999999999999999999999998875 4899999999999865 999999999999999999
Q ss_pred hHHhcc
Q 005314 681 ETLVHV 686 (703)
Q Consensus 681 ~eLl~~ 686 (703)
+|..+.
T Consensus 235 ~eV~~d 240 (250)
T COG0411 235 EEVRNN 240 (250)
T ss_pred HHHhcC
Confidence 998864
No 309
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-40 Score=311.55 Aligned_cols=223 Identities=27% Similarity=0.451 Sum_probs=187.5
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH-HHhc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK-WLRQ 535 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~-~lR~ 535 (703)
+.+..+|+..+|.. ++|.+++||++++||.|++.||+|+||||.+.++.|+..|++|+|.+||.||+.++.. --|.
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 35788999999974 4799999999999999999999999999999999999999999999999999999965 4678
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 536 QMGLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 536 ~i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
-|||+||||.+|.+ |++|||..-. +..+.+...+.+...+.+.++.+ .+...-...|.+||||||.|+-|||||.
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vl--E~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVL--EIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHH--hhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHh
Confidence 89999999999987 9999997652 12221222223333333444433 4555566789999999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEE-ccCc-hHHhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVI-AHRL-STIRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvI-aHrl-sti~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
.||+.+|||||++++||.+-..|++.+..+.....-|+| -|.. .|+.-|||.|++.+|+|..+|+.+|++++
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999888754455555 5887 48899999999999999999999999974
No 310
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.7e-38 Score=388.35 Aligned_cols=217 Identities=21% Similarity=0.343 Sum_probs=185.2
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
..|+++||+++|+++ ++++++|+||+|++||++||+|+||||||||+++|+|+..|++|+|.++|+++.. +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 359999999999742 3579999999999999999999999999999999999999999999999999965 45678899
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 537 MGLVSQEPVLFN-DTVRVNIAYGKE-GNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 537 i~~V~Qe~~LF~-gTIreNI~~g~~-~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
|||+||++.++. -|++||+.+... ...++++ +.++++..++.++ ......+||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~-----------~dk~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLY-----------ADRLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHH
Confidence 999999999886 599999976311 1123333 3344444444333 3345578999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|||+.+|+||||||||++||+.+.+.+++.|.++. +|+|+|++||.++.+.. ||||++|++|+++..|+.++|.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999998864 58999999999999865 999999999999999999999764
No 311
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.3e-39 Score=399.91 Aligned_cols=217 Identities=26% Similarity=0.412 Sum_probs=188.3
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
..|+++||++.|+++ ++++++|+||+|++||+++|+|+||||||||+++|+|++.|++|+|.++|.++.. +...+|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999632 3579999999999999999999999999999999999999999999999999975 56778999
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
|||+||++.+|.. |++|||.++.. ...+. +++.+.++.. |++........+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~v-----------gL~~~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT-----------GLHHKRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHH
Confidence 9999999999975 99999987521 11222 2334444443 444445566788999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|||+.+|+|||||||||+||+.+.+.+.+.|.++.+|+|+|++||++..+. .||||++|++|++++.|+.++|.++
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999888999999999999986 5999999999999999999999765
No 312
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-39 Score=296.06 Aligned_cols=221 Identities=30% Similarity=0.476 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeC--CC----CCHH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEI--QK----LQLK 531 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di--~~----~~~~ 531 (703)
.|.+++++|.|.. .++|.||+|+.+.|+++.+.||||+|||||++.|.=+--|.+|+..|-|... .. -...
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4899999999974 4799999999999999999999999999999999999999999999987532 22 2367
Q ss_pred HHhcceEEEccCCCCCc-ccHHHHHhcCCCC---CCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 532 WLRQQMGLVSQEPVLFN-DTVRVNIAYGKEG---NATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~LF~-gTIreNI~~g~~~---~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
.||+++|.|+|..+|+. -|+-||+.=. +. ..++ .+-.+.+|...+.+|-++.| ..|||||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enliea-p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggq 146 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQ 146 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhh-hHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccch
Confidence 89999999999999985 5999999544 21 1222 33455566677777777665 6899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChh
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~ 681 (703)
.||+||||||+-+|++|++||||+|||+|-..+|.+.|+++.. |-|-++|||-....++ |.+++.|++|+|||+|+|+
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999999999999998764 8899999999999865 9999999999999999998
Q ss_pred HHhccCCcHHHH
Q 005314 682 TLVHVKDGIYAS 693 (703)
Q Consensus 682 eLl~~~~g~Y~~ 693 (703)
..-+-+...|+.
T Consensus 227 ~ft~p~te~f~~ 238 (242)
T COG4161 227 CFTEPQTEAFKN 238 (242)
T ss_pred hccCccHHHHHH
Confidence 876532334444
No 313
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-39 Score=367.17 Aligned_cols=213 Identities=21% Similarity=0.343 Sum_probs=174.0
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH-HHHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL-KWLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~-~~lR~~ 536 (703)
.|+++|+++.|. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999999762 38999999999999999999999999999999999999999999999999876554 457789
Q ss_pred eEEEccCC---CCCc-ccHHHHHhcCCCC---------C-CCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCCh
Q 005314 537 MGLVSQEP---VLFN-DTVRVNIAYGKEG---------N-ATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSG 601 (703)
Q Consensus 537 i~~V~Qe~---~LF~-gTIreNI~~g~~~---------~-~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSG 601 (703)
|+||+|++ .+|. -|++||+.++... . .+..+. ...+.+.++.+ |+. -.......+|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 5775 4999999886210 0 011111 11233445544 342 223445567999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecC
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gt 679 (703)
|||||++|||||+.+|+|||||||||+||+.+.+.+.+.|.++. +++|+|+|||++..+. .||+|++|++|+|++.|+
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 4789999999999875 599999999999999887
Q ss_pred hhH
Q 005314 680 HET 682 (703)
Q Consensus 680 h~e 682 (703)
..+
T Consensus 493 ~~~ 495 (510)
T PRK09700 493 NRD 495 (510)
T ss_pred Ccc
Confidence 633
No 314
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-38 Score=304.58 Aligned_cols=221 Identities=25% Similarity=0.421 Sum_probs=191.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+.+|+|++-.+ +.+|+++||+++|||.+||+||||+|||||+|.|.|...|++|++.++|+++.+..+.++-++-|
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 788999998864 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC-CcccHHHHHhcCCCCC-----CCHHH--HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 539 LVSQEPVL-FNDTVRVNIAYGKEGN-----ATEAE--VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 539 ~V~Qe~~L-F~gTIreNI~~g~~~~-----~t~~e--i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
+.||+..| |.-|++|-+.||+-+. ..+++ ..+|+..+++..|-.+ .-..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHH
Confidence 99999998 9999999999997443 22444 5677777777555433 3468999999999999
Q ss_pred HHhcc------CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhH
Q 005314 611 RAMVK------APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 611 RAllk------~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~e 682 (703)
|.|.. ++++|+||||||+||......+++..+.+. +|..|++|-|+|+.. ..||||++|.+|||+..|+.++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99965 346999999999999999999999998865 578999999999975 6799999999999999999999
Q ss_pred HhccCCcHHHHHH
Q 005314 683 LVHVKDGIYASLV 695 (703)
Q Consensus 683 Ll~~~~g~Y~~l~ 695 (703)
.+. ...-.+.|
T Consensus 228 vlt--~Etl~~vy 238 (259)
T COG4559 228 VLT--DETLERVY 238 (259)
T ss_pred hcC--HHHHHHHh
Confidence 885 33344444
No 315
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-39 Score=303.75 Aligned_cols=205 Identities=31% Similarity=0.492 Sum_probs=170.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.+..++++.+|++.| .++|+|+|++|.+||+++++||||||||||+++++||.+|..|+|.+||+.|..-.- .=
T Consensus 3 ~l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----er 76 (259)
T COG4525 3 MLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ER 76 (259)
T ss_pred eeehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cc
Confidence 356789999999775 679999999999999999999999999999999999999999999999999877653 45
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKE-GNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|+|+|++.|+.- |+.||+.||.. ....+++ ..+.+..+++.++ =-..--+||||||||+.|||
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~-----------~~~~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA-----------EHKYIWQLSGGMRQRVGIAR 145 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccc-----------cccceEeecchHHHHHHHHH
Confidence 899999999986 99999999942 1222222 2223333333322 12345699999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchH-HhhcCEEEEEeC--CEEEEecC
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLST-IRDADLIAVVKN--GVIAEKGK 679 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlst-i~~aD~I~vl~~--G~Ive~Gt 679 (703)
||.-+|+.|+||||.+|||+-|..++|+.|-.++ .++.+++|||.+.. +--|++++||.- |+||+.=+
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 9999999999999999999999999999997765 48999999999986 466999999985 89998543
No 316
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.1e-38 Score=362.64 Aligned_cols=218 Identities=20% Similarity=0.296 Sum_probs=175.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-CCCeEEECCeeCCCCCH-HHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-DTGHITLDGVEIQKLQL-KWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-~~G~I~idG~di~~~~~-~~lR~ 535 (703)
-|+++|++++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++...+. .++|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999532234699999999999999999999999999999999999996 89999999999976543 56789
Q ss_pred ceEEEccCC---CCCc-ccHHHHHhcCCCCC------CCHHHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCChhHH
Q 005314 536 QMGLVSQEP---VLFN-DTVRVNIAYGKEGN------ATEAEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLSGGQK 604 (703)
Q Consensus 536 ~i~~V~Qe~---~LF~-gTIreNI~~g~~~~------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQk 604 (703)
+|+||+|++ .+|. .|++||+.++.... ...++ ....+.++++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 999999996 3665 59999998862100 11111 111233444444 3321 23344568999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~e 682 (703)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||++..+. .||+|++|++|+|+..++-++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998764 4789999999999886 499999999999998775443
No 317
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=7e-39 Score=343.41 Aligned_cols=187 Identities=38% Similarity=0.565 Sum_probs=157.9
Q ss_pred EEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcc-cHHHHHhcCCC-CCCCH----
Q 005314 492 LVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TVRVNIAYGKE-GNATE---- 565 (703)
Q Consensus 492 iVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~---- 565 (703)
|+||||||||||+++|+|+++|++|+|.+||+++..... .+++|+||+|++.+|.. |++|||.|+.. ...+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 46899999999999975 99999998731 11222
Q ss_pred HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc
Q 005314 566 AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM 645 (703)
Q Consensus 566 ~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~ 645 (703)
+++.++++..++.++. .....+||||||||+||||||+++|++||||||||+||+.+.+.+.+.|.++.
T Consensus 79 ~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFA-----------DRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 2345555555554433 34457899999999999999999999999999999999999999999998865
Q ss_pred C--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhccCCcHH
Q 005314 646 V--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHVKDGIY 691 (703)
Q Consensus 646 ~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y 691 (703)
+ ++|+|+|||++..+. .||+|++|++|+|++.|+.+++.+.+...|
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 3 789999999999875 599999999999999999999987544444
No 318
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-38 Score=345.46 Aligned_cols=210 Identities=31% Similarity=0.469 Sum_probs=180.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~ 536 (703)
-++++|++.+|| ..++|+|+||+++|||..|++|+||||||||+|+|.|.|.|++|+|.+||+++.-.++.+ ...-
T Consensus 8 ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 488999999998 457999999999999999999999999999999999999999999999999999888665 6678
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhcHHHHHHHhh--ccccchhcCCCCCCChhHHHHHH
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEGN-----ATEAEVLAAAELANAHQFISSLK--QGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~~-----~t~~ei~~A~~~a~l~~~I~~Lp--~G~dT~vGe~G~~LSGGQkQRia 608 (703)
|+.|.||..|+.. ||.|||-+|+.+. .+..++.+.++. .+..+- ...+|+|+ +||+||||-++
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v~----~LsiaqrQ~Ve 155 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLVG----DLSIAQRQMVE 155 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhhh----hCCHHHHHHHH
Confidence 9999999999865 9999999995432 234455444333 233331 12455555 69999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecC
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gt 679 (703)
||||+..+++|||||||||+|+..-...+.+.++++. +|.++|+|||||..+. -||||.||.||+.|..++
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999998875 6999999999999885 499999999999987665
No 319
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-39 Score=298.76 Aligned_cols=220 Identities=31% Similarity=0.515 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC---------
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL--------- 528 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~--------- 528 (703)
.++++|+..+|.. ..||+++||+.++|+.|.|+|.|||||||++++|.=+-.|+.|+|.++|.+|+--
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 6899999999974 4599999999999999999999999999999999999999999999999877432
Q ss_pred ----CHHHHhcceEEEccCCCCCc-ccHHHHHhcCCCCC---CCHHH-HHHHHHHhcHHHHHHHhhccccchhcCCCCCC
Q 005314 529 ----QLKWLRQQMGLVSQEPVLFN-DTVRVNIAYGKEGN---ATEAE-VLAAAELANAHQFISSLKQGYDTIVGERGIQL 599 (703)
Q Consensus 529 ----~~~~lR~~i~~V~Qe~~LF~-gTIreNI~~g~~~~---~t~~e-i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~L 599 (703)
..+.+|.+.|.|+|..-|++ .|+.||+.=+ +-. .+..| +..| ..++... |++-.-......|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhVLg~~k~ea~e~A------e~~L~kV--Gi~ek~~~YP~~L 153 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERA------EKYLAKV--GIAEKADAYPAHL 153 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHhhcCCHHHHHHHH------HHHHHHh--CchhhhhcCcccc
Confidence 25678999999999999985 6999999654 321 23333 3222 2223322 5555555677899
Q ss_pred ChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEe
Q 005314 600 SGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEK 677 (703)
Q Consensus 600 SGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~ 677 (703)
||||.||+||||||.-+|+++|+||||||||++---.|...+..+. +|||.++|||-+...++ +..++.|.+|+|-|+
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence 9999999999999999999999999999999999999999998865 58999999999999987 899999999999999
Q ss_pred cChhHHhccCCc
Q 005314 678 GKHETLVHVKDG 689 (703)
Q Consensus 678 Gth~eLl~~~~g 689 (703)
|+.+++..+|..
T Consensus 234 G~P~qvf~nP~S 245 (256)
T COG4598 234 GPPEQVFGNPQS 245 (256)
T ss_pred CChHHHhcCCCC
Confidence 999999876543
No 320
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.8e-38 Score=394.28 Aligned_cols=213 Identities=24% Similarity=0.395 Sum_probs=182.4
Q ss_pred cEEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC---CCCCeEEECCeeCCCCCHHHH
Q 005314 458 DIEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD---PDTGHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~---p~~G~I~idG~di~~~~~~~l 533 (703)
.++++||+++|+.++ ++++|+|+|++|+|||++||+||||||||||+++|+|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999996322 4579999999999999999999999999999999999998 78899999999985 257
Q ss_pred hcceEEEccCCC-CCcccHHHHHhcCC----CCCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 534 RQQMGLVSQEPV-LFNDTVRVNIAYGK----EGNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 534 R~~i~~V~Qe~~-LF~gTIreNI~~g~----~~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
|+++|||+|++. ++..|+|||+.++. +.+.++++ +.++++..++ .+-.|+.||+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 899999999875 56779999999852 11233333 4445554444 44579999999999999999
Q ss_pred HHHHHHHHhccCCC-EEEeeccCcCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHH--hhcCEEEEEeCC-EEEEecC
Q 005314 605 QRVAIARAMVKAPK-ILLLDEATSALDAESERVIQDALERV-MVGRTTVVIAHRLSTI--RDADLIAVVKNG-VIAEKGK 679 (703)
Q Consensus 605 QRiaIARAllk~p~-ILlLDEaTSaLD~~se~~v~~~l~~~-~~~rT~IvIaHrlsti--~~aD~I~vl~~G-~Ive~Gt 679 (703)
||++|||||+.+|+ ||+||||||+||+.+...|++.|+++ .+|+|+|+++|+++.. +.+|+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4589999999999973 679999999997 9999998
Q ss_pred hh
Q 005314 680 HE 681 (703)
Q Consensus 680 h~ 681 (703)
.+
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 53
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=361.32 Aligned_cols=209 Identities=25% Similarity=0.423 Sum_probs=169.5
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999973 46999999999999999999999999999999999999999999999982 4699
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCC---------------CCCHHH---HHHH----------HHHhcHHHHHHHhhcccc
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKEG---------------NATEAE---VLAA----------AELANAHQFISSLKQGYD 589 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~~---------------~~t~~e---i~~A----------~~~a~l~~~I~~Lp~G~d 589 (703)
||+|++.+|.. |++||+.++... +.+.+. +.+. -....+++.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988765 999999875210 000000 0000 0012234445544 444
Q ss_pred chh-cCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEE
Q 005314 590 TIV-GERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIA 667 (703)
Q Consensus 590 T~v-Ge~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~ 667 (703)
... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .+.|+|+|||++..+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 322 234678999999999999999999999999999999999999999999975 37899999999998854 99999
Q ss_pred EEeCCEE-EEecChhHHhc
Q 005314 668 VVKNGVI-AEKGKHETLVH 685 (703)
Q Consensus 668 vl~~G~I-ve~Gth~eLl~ 685 (703)
+|++|++ ++.|++++.++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 9999999 47999998875
No 322
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=358.68 Aligned_cols=211 Identities=22% Similarity=0.356 Sum_probs=174.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH-HHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK-WLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~-~lR~~ 536 (703)
-|+++||++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.. .+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999984 269999999999999999999999999999999999999999999999999877653 46788
Q ss_pred eEEEccCC---CCC-cccHHHHHhcCCCCC-------CCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChhHH
Q 005314 537 MGLVSQEP---VLF-NDTVRVNIAYGKEGN-------ATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGGQK 604 (703)
Q Consensus 537 i~~V~Qe~---~LF-~gTIreNI~~g~~~~-------~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQk 604 (703)
||||+|++ .+| ..|++||+.++.... .+.++. ...+.+++..+ |+. -.......+||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 354 469999998752100 111111 11234455554 442 234556678999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~e 682 (703)
||++||||++.+|+||||||||++||+.+.+.+.+.|.++. +|+|+|+|||++..+. .||+|++|++|+|++.|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998875 4789999999999875 599999999999999888766
Q ss_pred H
Q 005314 683 L 683 (703)
Q Consensus 683 L 683 (703)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 5
No 323
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.6e-38 Score=328.88 Aligned_cols=202 Identities=23% Similarity=0.314 Sum_probs=161.5
Q ss_pred EEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEE-----------ECCeeCCCCCH
Q 005314 462 QHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHIT-----------LDGVEIQKLQL 530 (703)
Q Consensus 462 ~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~-----------idG~di~~~~~ 530 (703)
.||+|+|+. ...+|+|+|+ +++||++||+||||||||||+++|+|+++|++|+|. +||+++.++..
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 378999973 2369999994 999999999999999999999999999999999996 88999877654
Q ss_pred HHHhc--ceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 531 KWLRQ--QMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 531 ~~lR~--~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
+..|. .+++++|++.++..++.+||.........++++.++++.. |++..+.....+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQL-----------ELRHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHH
Confidence 44443 4789988887776666666554311111123444444444 4445555677899999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCEEEEec
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKG 678 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~G 678 (703)
||||++++|+++||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|+ |++++.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999988754 7999999999999875 99999995 6666544
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.2e-38 Score=359.87 Aligned_cols=210 Identities=26% Similarity=0.383 Sum_probs=173.1
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+++|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999972 24699999999999999999999999999999999999999999999976 2479
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCCC----------------CC-C--------HHHHHHHHHHhcHHH-------HHHHh
Q 005314 538 GLVSQEPVLFN-DTVRVNIAYGKEG----------------NA-T--------EAEVLAAAELANAHQ-------FISSL 584 (703)
Q Consensus 538 ~~V~Qe~~LF~-gTIreNI~~g~~~----------------~~-t--------~~ei~~A~~~a~l~~-------~I~~L 584 (703)
|||+|+|.+|. .|++|||.++... .. . ..++.++++.++.++ .+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999986 4999999876210 00 1 123555555555433 33332
Q ss_pred hccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-c
Q 005314 585 KQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-A 663 (703)
Q Consensus 585 p~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-a 663 (703)
|++ .......+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. ++|+|+|||++..+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 124456789999999999999999999999999999999999999999999876 4699999999999876 8
Q ss_pred CEEEEEeCCEEE-EecChhHHhc
Q 005314 664 DLIAVVKNGVIA-EKGKHETLVH 685 (703)
Q Consensus 664 D~I~vl~~G~Iv-e~Gth~eLl~ 685 (703)
|+|++|++|+++ ..|++++.++
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 7899998664
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-38 Score=358.19 Aligned_cols=203 Identities=23% Similarity=0.350 Sum_probs=172.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +++
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 6999999999973 46999999999999999999999999999999999999999999999883 579
Q ss_pred EEEccCCC--CCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 538 GLVSQEPV--LFN-DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 538 ~~V~Qe~~--LF~-gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
|||+|++. ++. .|++||+.+.......++++.++++..++. .........+||||||||++||||++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHHh
Confidence 99999974 443 699999975312222345566666555541 11233556789999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEE-EecChhHHhcc
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIA-EKGKHETLVHV 686 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Iv-e~Gth~eLl~~ 686 (703)
.+|+||||||||++||+.+...+.+.|.+. +.|+|+|||++..+.. ||+|++|++|+++ ..|+++++++.
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999999999999999886 4699999999999865 9999999999998 78999998864
No 326
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=359.65 Aligned_cols=213 Identities=23% Similarity=0.342 Sum_probs=174.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH-HHHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL-KWLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~-~~lR~~ 536 (703)
.++++||++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999842 48999999999999999999999999999999999999999999999999875543 456789
Q ss_pred eEEEccCCC---CC-cccHHHHHhcCCCCCC-------CHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChhHH
Q 005314 537 MGLVSQEPV---LF-NDTVRVNIAYGKEGNA-------TEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGGQK 604 (703)
Q Consensus 537 i~~V~Qe~~---LF-~gTIreNI~~g~~~~~-------t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQk 604 (703)
++|++|++. +| ..|+.||+.++..... ...+- ...+++++..+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 55 4799999987621110 11111 11234455554 342 223445568999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~e 682 (703)
||++||||++.+|+||||||||++||..+.+.+.+.|.++. .+.|+|+|||++..+. .||+|++|++|++++.|+.+|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998865 4789999999999885 599999999999999999887
Q ss_pred Hh
Q 005314 683 LV 684 (703)
Q Consensus 683 Ll 684 (703)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 64
No 327
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=5.8e-38 Score=316.82 Aligned_cols=187 Identities=19% Similarity=0.230 Sum_probs=156.8
Q ss_pred cccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEE-ECCeeCCCCCHHHHhcceEEEccCCCCCcc-cHHH
Q 005314 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHIT-LDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TVRV 553 (703)
Q Consensus 476 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~-idG~di~~~~~~~lR~~i~~V~Qe~~LF~g-TIre 553 (703)
+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 787543 13467888876 9999
Q ss_pred HHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHH
Q 005314 554 NIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAE 632 (703)
Q Consensus 554 NI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~ 632 (703)
||.+... ...+.+++.+.+. + ...|++.+++.++ .||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~-----~-~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY-----Q-LTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH-----H-HhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9987521 1234444433321 1 2345666666664 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhc
Q 005314 633 SERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 633 se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|+|++.|+-+++..
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 99999999876667789999999999985 699999999999999999988865
No 328
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.6e-38 Score=358.82 Aligned_cols=210 Identities=26% Similarity=0.373 Sum_probs=169.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+++|++ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999972 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC---------------CCC----------HHHHHHHHHHhc-------HHHHHHHh
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEG---------------NAT----------EAEVLAAAELAN-------AHQFISSL 584 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~---------------~~t----------~~ei~~A~~~a~-------l~~~I~~L 584 (703)
|||+|+|.+|+. |++|||.++... ... ..++.++++.++ +.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999875 999999876210 000 011222222211 22233332
Q ss_pred hccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-c
Q 005314 585 KQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-A 663 (703)
Q Consensus 585 p~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-a 663 (703)
|++ .......+||||||||++|||||+.+|++||||||||+||+++...+.+.|.+. ++|+|+|||++..+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 123455689999999999999999999999999999999999999999999876 3699999999999865 9
Q ss_pred CEEEEEeCCEEE-EecChhHHhc
Q 005314 664 DLIAVVKNGVIA-EKGKHETLVH 685 (703)
Q Consensus 664 D~I~vl~~G~Iv-e~Gth~eLl~ 685 (703)
|+|++|++|+++ ..|+++++.+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7899998754
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.1e-37 Score=295.31 Aligned_cols=143 Identities=34% Similarity=0.601 Sum_probs=134.8
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|++ .++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+ +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 578999999974 36999999999999999999999999999999999999999999999994 4799
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
|++| |||||+||++||||++++|+
T Consensus 67 ~~~~--------------------------------------------------------lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 67 YFEQ--------------------------------------------------------LSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred EEcc--------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 9999 99999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCE
Q 005314 619 ILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGV 673 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~ 673 (703)
++||||||++||+.+...+.+.|+++ ++|+|++||++..+.. ||+|++|++||
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999876 5899999999999965 89999999986
No 330
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.6e-37 Score=319.97 Aligned_cols=194 Identities=25% Similarity=0.352 Sum_probs=158.0
Q ss_pred EEcCCCCCcccccceeEEee-----CCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEE
Q 005314 466 FKYPARPDVQIFRDLCLAIP-----SGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLV 540 (703)
Q Consensus 466 F~Y~~~~~~~vL~~isl~I~-----~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V 540 (703)
|+||+. .+.++|++|+++ +||+++|+|+||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 678843 458999999997 68999999999999999999999999999999999994 69999
Q ss_pred ccCCC-CCcccHHHHHhcCCCCCCC-HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 541 SQEPV-LFNDTVRVNIAYGKEGNAT-EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 541 ~Qe~~-LF~gTIreNI~~g~~~~~t-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
+|++. .|+.|++||+.+....... .....++++..+ ++........+||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~-----------l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ-----------IEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC-----------CHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99997 4789999999765211111 122334444433 3333445667899999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEE--EecChhHHh
Q 005314 619 ILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIA--EKGKHETLV 684 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Iv--e~Gth~eLl 684 (703)
++||||||++||+++...+.+.|.++.+ ++|+|+|||++..+.. ||+|++|+++..+ ..++..++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999999999999999998753 7999999999999874 9999999875443 455666654
No 331
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-38 Score=310.21 Aligned_cols=197 Identities=34% Similarity=0.503 Sum_probs=176.3
Q ss_pred cceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC----CCCHHHHhcceEEEccCCCCCc-ccHH
Q 005314 478 RDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ----KLQLKWLRQQMGLVSQEPVLFN-DTVR 552 (703)
Q Consensus 478 ~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~----~~~~~~lR~~i~~V~Qe~~LF~-gTIr 552 (703)
=++||+.+.-..+||-|+||||||||+|+|.|+..|++|+|.+||.-+. .+...--+++||||+||.-||. .|+|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 3678888887999999999999999999999999999999999998764 4556677899999999999995 6999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHH
Q 005314 553 VNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAE 632 (703)
Q Consensus 553 eNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~ 632 (703)
-|++|| ....+.++..+++.+-|+...+.+.| ..||||+|||+||+|||+.+|++|+||||.|+||-.
T Consensus 95 gNL~YG-~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 95 GNLRYG-MWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred cchhhh-hcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence 999999 54566778888888888888777766 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 633 SERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 633 se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
..++++-.|+++.+ +--++.|||.+..+ +-||+|++|+||||...|.-+|.+++
T Consensus 163 RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 163 RKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 99999999988765 34689999999976 56999999999999999999999875
No 332
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.7e-37 Score=351.31 Aligned_cols=213 Identities=22% Similarity=0.350 Sum_probs=174.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~ 536 (703)
-|+++|+++ .+|+|+||+|++|+++||+|+||||||||+++|.|+++|++|+|.++|.++...+..+ +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1599999999999999999999999999999999999999999999999998877654 4678
Q ss_pred eEEEccCC---CCCc-ccHHHHHhcCC---CCC-CCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChhHHHHH
Q 005314 537 MGLVSQEP---VLFN-DTVRVNIAYGK---EGN-ATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 537 i~~V~Qe~---~LF~-gTIreNI~~g~---~~~-~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQkQRi 607 (703)
|+||||++ .+|. .|+.+|+.... ... ....+. ...+.+++..+ |+. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999996 3665 49999996420 000 011111 11234455554 443 334556678999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
+||||++.+|+||||||||++||+.+.+.+.+.|.++. +++|+|+|||++..+.. ||+|++|++|+|+..|+-+++..
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999999999999999999998864 47899999999999865 99999999999999998877653
No 333
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4.8e-37 Score=328.22 Aligned_cols=209 Identities=31% Similarity=0.520 Sum_probs=178.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH-HHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK-WLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~-~lR~~ 536 (703)
-|++++++..|| ...+++||||+|++||+-||.|+||+|||||+++|.|+|.|++|+|++||++++--++. ..|.-
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 45789999999999999999999999999999999999999999999999999877765 58889
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCCCC----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEGNA----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~~~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
||.|.|.+.|++. |+.|||.+|..+.. +..+.. ..+.+..++. |++-..-++-..||-||+||+-|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~-----~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR-----ARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHH-----HHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999976 99999999943211 211211 1223333332 4555555677789999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEE
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAE 676 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive 676 (703)
|||++|+|||||||||-|-+.--..+.+.++++. .|+|+|+|||+|..++. |||+-||.+||++.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 9999999999999999999999999999998865 59999999999999877 99999999999874
No 334
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.8e-37 Score=350.13 Aligned_cols=206 Identities=23% Similarity=0.297 Sum_probs=166.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-CCCeEEECCeeCCC-CCHHHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-DTGHITLDGVEIQK-LQLKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-~~G~I~idG~di~~-~~~~~lR~ 535 (703)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .....+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999963 4699999999999999999999999999999999998876 69999999987642 23345788
Q ss_pred ceEEEccCCCCCc---ccHHHHHhcCCC------CCCCH---HHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCChh
Q 005314 536 QMGLVSQEPVLFN---DTVRVNIAYGKE------GNATE---AEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLSGG 602 (703)
Q Consensus 536 ~i~~V~Qe~~LF~---gTIreNI~~g~~------~~~t~---~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGG 602 (703)
+|+||+|++.++. .|+++|+.++.. ..... +++.++++..+ ++. .......+||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgG 405 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILG-----------IDKRTADAPFHSLSWG 405 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcC-----------CchhhccCchhhCCHH
Confidence 9999999987643 477777754311 00111 23344444433 333 334455789999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-Cc-eEEEEccCchHHhh--cCEEEEEeCCEEEEe
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GR-TTVVIAHRLSTIRD--ADLIAVVKNGVIAEK 677 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~r-T~IvIaHrlsti~~--aD~I~vl~~G~Ive~ 677 (703)
||||++|||||+.+|+||||||||++||+++.+.+.+.|.++.+ ++ |+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999999988753 44 69999999999964 899999999999874
No 335
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=343.64 Aligned_cols=212 Identities=22% Similarity=0.352 Sum_probs=170.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH-HHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK-WLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~-~lR~~ 536 (703)
.|+++||++.| .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|+++...+.. .+|+.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999975 2489999999999999999999999999999999999999999999999999877654 45788
Q ss_pred eEEEccCCC---CCc-ccHHHH-----HhcCCCC-C-CCHHHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCChhHH
Q 005314 537 MGLVSQEPV---LFN-DTVRVN-----IAYGKEG-N-ATEAEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLSGGQK 604 (703)
Q Consensus 537 i~~V~Qe~~---LF~-gTIreN-----I~~g~~~-~-~t~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQk 604 (703)
++|++|++. +|. .|+.+| +.+.... . .+..+..+ .+.+++..+ |+.. .......+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 565 477766 4322110 1 11122211 233445554 3321 23556678999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChh
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~ 681 (703)
||++||||++++|+||||||||++||+.+...|.+.|.++. +++|+|+|||++..+. .||+|++|++|+++..++-+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999998764 5899999999999885 59999999999999877654
No 336
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-37 Score=292.82 Aligned_cols=222 Identities=28% Similarity=0.468 Sum_probs=192.7
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+.+|. ++.|++++|++|++|+.++|+||+|+|||||+.++.|+..+++|+|.|||.++.+.+-+.|-+.++
T Consensus 2 I~i~nv~K~y~---~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhC---CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 78999999997 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC-cccHHHHHhcCCCC----CCC---HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 539 LVSQEPVLF-NDTVRVNIAYGKEG----NAT---EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 539 ~V~Qe~~LF-~gTIreNI~~g~~~----~~t---~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
+.-|+.++- .-||||=+.||+-| ..+ ..-|.+|++--++.+.=. ..-.+||||||||.-||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~d-----------ryLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD-----------RYLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHH-----------HhHHhcccchhhhhhhh
Confidence 999999874 45999999999633 122 234667766665543222 23357999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhccC
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHVK 687 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~ 687 (703)
..+..+.+.++||||..+||-.....+++.|+++.. +||+|+|-|+.+.... +|.|+-|+||+++.+|+.+|++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~-- 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ-- 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC--
Confidence 999999999999999999999999999999987654 8999999999999855 99999999999999999999996
Q ss_pred CcHHHHHHH
Q 005314 688 DGIYASLVA 696 (703)
Q Consensus 688 ~g~Y~~l~~ 696 (703)
...-.++|.
T Consensus 226 ~~~L~eiyd 234 (252)
T COG4604 226 PEILSEIYD 234 (252)
T ss_pred HHHHHHHhc
Confidence 344555553
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-36 Score=288.86 Aligned_cols=155 Identities=41% Similarity=0.695 Sum_probs=145.7
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEE
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~ 539 (703)
+++|++|.|++ .++|+++||+|++|++++|+|+||||||||+++|.|+++|++|+|.++|.++.......++++++|
T Consensus 1 ~~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 37899999974 369999999999999999999999999999999999999999999999999988878888999999
Q ss_pred EccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCE
Q 005314 540 VSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKI 619 (703)
Q Consensus 540 V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~I 619 (703)
++| |||||+||++||||++.+|++
T Consensus 78 ~~q--------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 78 VPQ--------------------------------------------------------LSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred Eee--------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 999 999999999999999999999
Q ss_pred EEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCE
Q 005314 620 LLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRD-ADLIAVVKNGV 673 (703)
Q Consensus 620 LlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~-aD~I~vl~~G~ 673 (703)
+||||||++||.++...+.+.+.+..+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999987654 5899999999999988 59999999985
No 338
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.1e-35 Score=368.30 Aligned_cols=213 Identities=27% Similarity=0.409 Sum_probs=179.0
Q ss_pred cEEEEEEEEEcCCC----------CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC--CCCeEEECCeeC
Q 005314 458 DIEFQHITFKYPAR----------PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP--DTGHITLDGVEI 525 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~----------~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p--~~G~I~idG~di 525 (703)
.+.|+||+|..+.. ...++|+|+|++|+||+++||+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 69999999998532 124799999999999999999999999999999999999874 789999999886
Q ss_pred CCCCHHHHhcceEEEccCCCCCc-ccHHHHHhcCC----CCCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCC
Q 005314 526 QKLQLKWLRQQMGLVSQEPVLFN-DTVRVNIAYGK----EGNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERG 596 (703)
Q Consensus 526 ~~~~~~~lR~~i~~V~Qe~~LF~-gTIreNI~~g~----~~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G 596 (703)
+ ...+|+.+|||+|++.++. .|++|||.|+. +.+.+.++ +.+.++..++. +-.|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-------~~~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-------NLKDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-------hHhCCccCCCC
Confidence 4 3457889999999988775 59999998752 12233332 44555555543 33588888655
Q ss_pred -CCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeC-
Q 005314 597 -IQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLST--IRDADLIAVVKN- 671 (703)
Q Consensus 597 -~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlst--i~~aD~I~vl~~- 671 (703)
..||||||||++|||||+.+|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|+++. ...+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5899999999999999999999999999999999999999999998865 48999999999984 477999999996
Q ss_pred CEEEEecCh
Q 005314 672 GVIAEKGKH 680 (703)
Q Consensus 672 G~Ive~Gth 680 (703)
|+++..|+.
T Consensus 1097 G~~v~~G~~ 1105 (1470)
T PLN03140 1097 GQVIYSGPL 1105 (1470)
T ss_pred CEEEEECCc
Confidence 899999985
No 339
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-35 Score=340.67 Aligned_cols=202 Identities=25% Similarity=0.392 Sum_probs=165.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999973 4699999999999999999999999999999999999999999999954 21 69
Q ss_pred EEEccCC-CCCc-ccHHHHHhcCCCC-CC--CHHHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEP-VLFN-DTVRVNIAYGKEG-NA--TEAEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~-~LF~-gTIreNI~~g~~~-~~--t~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||+|++ .++. .|++||+.++... .. .+.+..+++ ..+ |+.. .......+||||||||++|||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV---------GRF--NFKGGDQQKKVGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHH---------HhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 9999997 5654 5999999886211 11 122223333 332 3321 123455689999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeC-CEEE-EecChhHHhcc
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKN-GVIA-EKGKHETLVHV 686 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~-G~Iv-e~Gth~eLl~~ 686 (703)
|++.+|++|||||||++||+.+...+.+.|.+.. .|+|+|||++..+.. ||+|++|++ |++. ..|+++++++.
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999998863 499999999998865 999999996 7887 48999988753
No 340
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=7.6e-36 Score=309.47 Aligned_cols=232 Identities=30% Similarity=0.455 Sum_probs=192.0
Q ss_pred cEEEEEEEEEcCC-CCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-----CCCeEEECCeeCCCCCHH
Q 005314 458 DIEFQHITFKYPA-RPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-----DTGHITLDGVEIQKLQLK 531 (703)
Q Consensus 458 ~I~~~~vsF~Y~~-~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-----~~G~I~idG~di~~~~~~ 531 (703)
-++++|++.+|.. .....+.+++||.|++||++||||+||||||--...++|+++- .+|+|+++|.|+-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3788888877742 1256799999999999999999999999999999999999854 379999999999999988
Q ss_pred HHhc----ceEEEccCCCC-Ccc--c----HHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCC
Q 005314 532 WLRQ----QMGLVSQEPVL-FND--T----VRVNIAYGKE--GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQ 598 (703)
Q Consensus 532 ~lR~----~i~~V~Qe~~L-F~g--T----IreNI~~g~~--~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 598 (703)
.+|+ +|+.|+|||.- .|- | |.|-|.+.+. ..+-.+++.+-++.+|+.+= .-.+.....+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCcc
Confidence 8885 89999999962 232 3 4455555421 12334567777777776432 1234467799
Q ss_pred CChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEE
Q 005314 599 LSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIA 675 (703)
Q Consensus 599 LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Iv 675 (703)
||||||||+.||-||..+|++||-||||.|||....++|.+-|+++.+ |-.+++|||+|+.++. ||||+||.+|+||
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999987643 7899999999999976 9999999999999
Q ss_pred EecChhHHhccCCcHHHHHHHh
Q 005314 676 EKGKHETLVHVKDGIYASLVAL 697 (703)
Q Consensus 676 e~Gth~eLl~~~~g~Y~~l~~~ 697 (703)
|.|+-++|.+.+.-.|.+..-.
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~ 259 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLA 259 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHh
Confidence 9999999998888899886643
No 341
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.3e-35 Score=346.01 Aligned_cols=201 Identities=27% Similarity=0.368 Sum_probs=166.1
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+|.|+++ .++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999642 3699999999999999999999999999999999999999999999876 2479
Q ss_pred EEEccCCCCCcccHHHHHhcC--C-CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 538 GLVSQEPVLFNDTVRVNIAYG--K-EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 538 ~~V~Qe~~LF~gTIreNI~~g--~-~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
||++|++. ...++.+|+.+. . .+..+++++.++++..++.+. .......+||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~----------~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChH----------HhcCCccccCHHHHHHHHHHHHHh
Confidence 99999973 233555664321 0 123456777777777666321 122346789999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEE-EecChhHHh
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIA-EKGKHETLV 684 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Iv-e~Gth~eLl 684 (703)
.+|++|||||||++||+.+...+.+.|.+. +.|+|+|||++..+.. ||+|++|++|+|+ ..|++++..
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999998775 3599999999999875 9999999999998 678887653
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.5e-36 Score=290.74 Aligned_cols=145 Identities=28% Similarity=0.402 Sum_probs=132.2
Q ss_pred EEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEc
Q 005314 462 QHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVS 541 (703)
Q Consensus 462 ~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 541 (703)
.||+++|++ .++++++ |+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 588999963 4688884 9999999999999999999999999999999999999999963 78999
Q ss_pred cCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 005314 542 QEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILL 621 (703)
Q Consensus 542 Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILl 621 (703)
|++. ||||||||++||||++.+|+++|
T Consensus 68 q~~~-----------------------------------------------------LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 68 QYID-----------------------------------------------------LSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred ccCC-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 8753 99999999999999999999999
Q ss_pred eeccCcCCCHHHHHHHHHHHHHHc-C-CceEEEEccCchHHh-hcCEEEEEeCCEEE
Q 005314 622 LDEATSALDAESERVIQDALERVM-V-GRTTVVIAHRLSTIR-DADLIAVVKNGVIA 675 (703)
Q Consensus 622 LDEaTSaLD~~se~~v~~~l~~~~-~-~rT~IvIaHrlsti~-~aD~I~vl~~G~Iv 675 (703)
|||||++||+++.+.+.+.+.++. + ++|+|+|||++..+. .||+|++|+++-.+
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999999998864 3 389999999999987 49999999987655
No 343
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.3e-35 Score=338.62 Aligned_cols=201 Identities=26% Similarity=0.406 Sum_probs=165.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|+|++.|++|+|.+++ ++ +|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999973 4699999999999999999999999999999999999999999999955 21 69
Q ss_pred EEEccCCC-CCc-ccHHHHHhcCCCC-CCC--HHHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPV-LFN-DTVRVNIAYGKEG-NAT--EAEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~-LF~-gTIreNI~~g~~~-~~t--~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||+|++. +|. .|++||+.++... ... +.+..+ ++..+ |++. ........||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA---------YVGRF--NFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH---------HHHhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 99999973 554 5999999986311 111 122222 33333 3332 234456789999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeC-CEEE-EecChhHHhc
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKN-GVIA-EKGKHETLVH 685 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~-G~Iv-e~Gth~eLl~ 685 (703)
|++.+|++|||||||++||+.+...+.+.|.++. .|+|+|||++..+.. ||+|++|++ |+++ ..|+++++++
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999999999999999999873 599999999998865 999999997 5876 5688888764
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.5e-35 Score=343.05 Aligned_cols=201 Identities=25% Similarity=0.406 Sum_probs=164.1
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999973 46999999999999999999999999999999999999999999999 5332 69
Q ss_pred EEEccCC-CCCcc-cHHHHHhcCCCCCC--C--HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEP-VLFND-TVRVNIAYGKEGNA--T--EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~-~LF~g-TIreNI~~g~~~~~--t--~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
||++|++ .++.. |+.||+.++.. .. + ..++.+.++..++. ++-.+ .....||||||||++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~l~~~~l~------~~~~~----~~~~~LSgGekqRl~la~ 453 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQ-EVMVNGRPRHVLGYLQDFLFH------PKRAM----TPVKALSGGERNRLLLAR 453 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcc-cccccchHHHHHHHHHhcCCC------HHHHh----ChhhhCCHHHHHHHHHHH
Confidence 9999986 46554 99999988622 11 1 22233333222221 11123 344579999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEe-CCEEEE-ecChhHHhc
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVK-NGVIAE-KGKHETLVH 685 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~-~G~Ive-~Gth~eLl~ 685 (703)
|++.+|++|||||||++||..+...+.+.|.+. +.|+|+|||++..+. .||+|++|+ +|+|++ .|+|++-++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999999999999999999876 569999999999885 499999998 899986 688888754
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=342.56 Aligned_cols=200 Identities=26% Similarity=0.361 Sum_probs=165.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999741 279
Q ss_pred EEEccCC--CCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 538 GLVSQEP--VLFN-DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 538 ~~V~Qe~--~LF~-gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
||++|++ .++. .|+.+|+... .+...++++.+.++..++.+ ..+.....+||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHh
Confidence 9999985 3443 4888887532 22223444555544444311 1233445689999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEE-EecChhHHh
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIA-EKGKHETLV 684 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Iv-e~Gth~eLl 684 (703)
.+|++|||||||++||..+...+.+.|.++ +.|+|+|||++..+.. ||+|++|++|+|+ ..|++++..
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999887 4599999999999865 9999999999998 689998874
No 346
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.3e-35 Score=287.37 Aligned_cols=161 Identities=29% Similarity=0.476 Sum_probs=133.7
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHH
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVR 552 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIr 552 (703)
.+++|+|+||+|++|++++|+||||||||||+++++ +++|+|.++|.. ..+ .|+.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 467999999999999999999999999999999995 369999998862 221 2456888887
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC--CCEEEeeccCcCCC
Q 005314 553 VNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA--PKILLLDEATSALD 630 (703)
Q Consensus 553 eNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~--p~ILlLDEaTSaLD 630 (703)
. +++..++-+.. ....+..+||||||||++||||++++ |+++||||||++||
T Consensus 68 ----------------~---------~~l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 ----------------L---------QFLIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred ----------------H---------HHHHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 1 23333322211 25667889999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeC------CEEEEec
Q 005314 631 AESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVVKN------GVIAEKG 678 (703)
Q Consensus 631 ~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~------G~Ive~G 678 (703)
+++.+.+.+.|.++. .++|+|+|||++..++.||+|++|++ |++||.|
T Consensus 122 ~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 176 (176)
T cd03238 122 QQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 (176)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCcEEEecC
Confidence 999999999998865 58999999999999999999999966 5556654
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.5e-35 Score=335.85 Aligned_cols=192 Identities=23% Similarity=0.322 Sum_probs=162.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|+|+.+|++|+|.++ .+|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999963 24999999999999999999999999999999999999999999986 159
Q ss_pred EEEccCCCC-CcccHHHHHhcCCCCCC-CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 538 GLVSQEPVL-FNDTVRVNIAYGKEGNA-TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 538 ~~V~Qe~~L-F~gTIreNI~~g~~~~~-t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
+|+||++.+ ++.|++||+.++. ... .+..+.++++..++.+. ......+||||||||++|||||++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~L~~l~l~~~-----------~~~~~~~LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSIT-DDLGSSYYKSEIIKPLQLERL-----------LDKNVKDLSGGELQRVAIAACLSR 470 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHh-hhcChHHHHHHHHHHCCCHHH-----------HhCCcccCCHHHHHHHHHHHHHhc
Confidence 999999875 5679999998862 222 22334555555554332 334556899999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecC
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gt 679 (703)
+|+||||||||++||.++...+.+.|+++.+ ++|+|+|||++..+. .||+|++|++ ++...|+
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999998753 789999999999875 5999999975 8877776
No 348
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.2e-35 Score=362.14 Aligned_cols=208 Identities=24% Similarity=0.261 Sum_probs=170.8
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC----CCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCc-
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFY----DPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN- 548 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y----~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~- 548 (703)
+++|+|+|++++|||.+||+||||||||||+++|+|.. .|.+|+|.+||+++.+.. ..+|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 56999999999999999999999999999999999986 579999999999987654 456788999999998886
Q ss_pred ccHHHHHhcCCC---C-----CCCHHHHHHHHHHhcHHHHHHHhhccccchhcC-CCCCCChhHHHHHHHHHHhccCCCE
Q 005314 549 DTVRVNIAYGKE---G-----NATEAEVLAAAELANAHQFISSLKQGYDTIVGE-RGIQLSGGQKQRVAIARAMVKAPKI 619 (703)
Q Consensus 549 gTIreNI~~g~~---~-----~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe-~G~~LSGGQkQRiaIARAllk~p~I 619 (703)
-|++||+.|+.. + +.++++..+.....-++. -.|.+-.||.||+ ....||||||||++|||||+.+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMAT--YGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHH--cCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 499999988621 1 123333221110000111 1345567899986 4568999999999999999999999
Q ss_pred EEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCch-HH-hhcCEEEEEeCCEEEEecChhHHh
Q 005314 620 LLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLS-TI-RDADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 620 LlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrls-ti-~~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
|+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++ .+ +.+|+|++|++|+++..|+.+++.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 999999999999999999999998753 799999999974 44 569999999999999999998874
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=332.39 Aligned_cols=208 Identities=24% Similarity=0.357 Sum_probs=162.6
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|++ +++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999974 469999999999999999999999999999999999999999999999842 489
Q ss_pred EEccCCCCCcccHHHHHhcCCCCC---CCH-----------HHHHHHHH----------HhcHHHHHHHhhcccc-chhc
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGN---ATE-----------AEVLAAAE----------LANAHQFISSLKQGYD-TIVG 593 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~---~t~-----------~ei~~A~~----------~a~l~~~I~~Lp~G~d-T~vG 593 (703)
|++|++..+..|+.+++.-+ ... .+. ..+..... ...+.+.+..+ |+. ....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~ 144 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDG-DREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLE 144 (638)
T ss_pred EEecCCCCCCCCHHHHHHHh-hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhc
Confidence 99997665666766665422 100 000 00000000 01123334443 443 2234
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCC
Q 005314 594 ERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNG 672 (703)
Q Consensus 594 e~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G 672 (703)
....+||||||||++|||||+.+|+||||||||++||.++...+.+.|.+. +.|+|+|||++..+.. ||+|++|++|
T Consensus 145 ~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G 222 (638)
T PRK10636 145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQ 222 (638)
T ss_pred CchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 455789999999999999999999999999999999999999999999876 5799999999999865 9999999999
Q ss_pred EEEE-ecChhHHhc
Q 005314 673 VIAE-KGKHETLVH 685 (703)
Q Consensus 673 ~Ive-~Gth~eLl~ 685 (703)
+++. .|+++..+.
T Consensus 223 ~i~~~~g~~~~~~~ 236 (638)
T PRK10636 223 SLFEYTGNYSSFEV 236 (638)
T ss_pred EEEEecCCHHHHHH
Confidence 9974 788887664
No 350
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.2e-34 Score=275.78 Aligned_cols=202 Identities=26% Similarity=0.441 Sum_probs=175.5
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCC--C-cc
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL--F-ND 549 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~L--F-~g 549 (703)
++++|+++||+|+.|++|-|+|.+|||||||++.|.|-..|++|+|+|||+|+...+...--..++-|+|||-. | +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 56899999999999999999999999999999999999999999999999999999998888999999999963 4 45
Q ss_pred cHHHHHhcCCCC----CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeecc
Q 005314 550 TVRVNIAYGKEG----NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEA 625 (703)
Q Consensus 550 TIreNI~~g~~~----~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEa 625 (703)
||.||+.++... ..+. -...-+.....+-+.++|.|++-.++.+---|||||||=|+++-|.++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~--~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSS--ALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccch--hhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999887321 1111 1122234456677889999999999999999999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchH-HhhcCEEEEEeCCEEEE
Q 005314 626 TSALDAESERVIQDALERVM--VGRTTVVIAHRLST-IRDADLIAVVKNGVIAE 676 (703)
Q Consensus 626 TSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlst-i~~aD~I~vl~~G~Ive 676 (703)
|+||||.+...|++.=++.- .+-|+++|||.+.- +..-+|.++|++|+||-
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 99999999999988776642 35799999999985 67899999999999985
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.6e-34 Score=355.96 Aligned_cols=209 Identities=27% Similarity=0.425 Sum_probs=171.6
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC---CCeEEECCeeCCCCCHHHHhcceEEEccCCCCCc-
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD---TGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN- 548 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~---~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~- 548 (703)
..++|+|+|+.|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .|+.++||+|++.+|.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCc
Confidence 356999999999999999999999999999999999999998 999999999987654 3789999999987775
Q ss_pred ccHHHHHhcCCC----C-------CCCHH----------HH---HHHHHHhc------HHHHHH--HhhccccchhcCCC
Q 005314 549 DTVRVNIAYGKE----G-------NATEA----------EV---LAAAELAN------AHQFIS--SLKQGYDTIVGERG 596 (703)
Q Consensus 549 gTIreNI~~g~~----~-------~~t~~----------ei---~~A~~~a~------l~~~I~--~Lp~G~dT~vGe~G 596 (703)
.|++||+.|+.. . +.+.+ ++ .+++...+ .++.++ .|.+-.||.||+..
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 599999988521 0 01111 11 11211111 123333 34556689998644
Q ss_pred -CCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCch--HHhhcCEEEEEeC
Q 005314 597 -IQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLS--TIRDADLIAVVKN 671 (703)
Q Consensus 597 -~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrls--ti~~aD~I~vl~~ 671 (703)
..||||||||++||||++.+|++|+|||||++||+.+...|.+.|+++. .++|+|+++|+++ ....+|+|++|++
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~ 413 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE 413 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC
Confidence 6899999999999999999999999999999999999999999999875 3789999999974 5577999999999
Q ss_pred CEEEEecChhHHh
Q 005314 672 GVIAEKGKHETLV 684 (703)
Q Consensus 672 G~Ive~Gth~eLl 684 (703)
|+++..|+.++++
T Consensus 414 G~ivy~G~~~~~~ 426 (1470)
T PLN03140 414 GQIVYQGPRDHIL 426 (1470)
T ss_pred ceEEEeCCHHHHH
Confidence 9999999998886
No 352
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-34 Score=281.06 Aligned_cols=211 Identities=31% Similarity=0.428 Sum_probs=174.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH-HHHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL-KWLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~-~~lR~~ 536 (703)
-|+|+||++.|. ++++|+|||++|+|||..+|+|+||||||||++++.+.+.|++|.+.+.|+..-.-+. .++|++
T Consensus 31 li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 499999999997 4579999999999999999999999999999999999999999999999999988877 999999
Q ss_pred eEEEccCCC---CCcccHHHHHhcC------CCC-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 537 MGLVSQEPV---LFNDTVRVNIAYG------KEG-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 537 i~~V~Qe~~---LF~gTIreNI~~g------~~~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
||+|+-+-+ .=+.+++|=+.-| ... +.|+++..+|-.. ++.+ |.....+..=..||-|||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~l------le~~--g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL------LELL--GAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHH------HHHc--chhhhccCchhhcCHhHHHH
Confidence 999986432 2345677766433 112 4566555444322 2221 33334445567899999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC---CceEEEEccCchHH-hhcCEEEEEeCCEEEEecC
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV---GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~---~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gt 679 (703)
+-|||||+++|.+|||||||++||......+.+.|.++.. +.|+|+|||+...+ ...++++.+++|+++.+|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999988653 57899999999987 5689999999999998874
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.1e-33 Score=325.53 Aligned_cols=208 Identities=27% Similarity=0.382 Sum_probs=160.0
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+++|++ .++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|. . .+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EE
Confidence 3899999999973 46999999999999999999999999999999999999999999999873 1 36
Q ss_pred EEEccCCCC-CcccHHHHHhcCCC-----------------CCCCHHHHHHHHH-------------HhcHHHHHHHhhc
Q 005314 538 GLVSQEPVL-FNDTVRVNIAYGKE-----------------GNATEAEVLAAAE-------------LANAHQFISSLKQ 586 (703)
Q Consensus 538 ~~V~Qe~~L-F~gTIreNI~~g~~-----------------~~~t~~ei~~A~~-------------~a~l~~~I~~Lp~ 586 (703)
++++|++.. ..+|+.+++..+.. .+..++.+..... ...+.+.+..+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 788887642 23567666543210 0000011110000 01122333333
Q ss_pred cccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCE
Q 005314 587 GYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADL 665 (703)
Q Consensus 587 G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~ 665 (703)
|+. ....-..||||||||++|||||+.+|+||||||||++||+++...+.+.|.++ +.|+|+|||++..+.. ||+
T Consensus 147 gl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 147 GLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred CCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCe
Confidence 332 13345689999999999999999999999999999999999999999999887 3699999999999865 999
Q ss_pred EEEEeCCEEEE-ecChhHHhc
Q 005314 666 IAVVKNGVIAE-KGKHETLVH 685 (703)
Q Consensus 666 I~vl~~G~Ive-~Gth~eLl~ 685 (703)
|++|++|+++. .|++++.++
T Consensus 223 i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEEECCEEEEecCCHHHHHH
Confidence 99999999985 699987665
No 354
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.9e-33 Score=263.23 Aligned_cols=228 Identities=22% Similarity=0.423 Sum_probs=180.8
Q ss_pred EEEEEEEEEcCC------CCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH
Q 005314 459 IEFQHITFKYPA------RPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW 532 (703)
Q Consensus 459 I~~~~vsF~Y~~------~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~ 532 (703)
++++|++..+-. +....+.+.+||+++.|+++||+|.+|||||||+++|.|..+|++|+|++||.++.--+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 456666544321 22345789999999999999999999999999999999999999999999999997777777
Q ss_pred HhcceEEEccCCC-CCcc----------cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 533 LRQQMGLVSQEPV-LFND----------TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 533 lR~~i~~V~Qe~~-LF~g----------TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
--++|-.++|||- -||- .++-|--+. +.+-.++|.+.++.+|+ +|+--+ -+...||-
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~--~~~R~~~i~~TL~~VGL------~Pdhan----~~~~~la~ 152 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLE--PEQRRKQIFETLRMVGL------LPDHAN----YYPHMLAP 152 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCC--hHHHHHHHHHHHHHhcc------Cccccc----cchhhcCc
Confidence 7789999999994 3442 222222221 12334678888888887 344322 24578999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHH--cCCceEEEEccCchHHhh-cCEEEEEeCCEEEEec
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERV--MVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKG 678 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~--~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~G 678 (703)
|||||+|+||||+-+|+|+|-|||..+||..-..++...+-++ ..|-.-|.|+..+-.+++ +|+|+||++|++||.|
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence 9999999999999999999999999999999988888776543 347899999999999987 9999999999999999
Q ss_pred ChhHHhccC-CcHHHHHHHhh
Q 005314 679 KHETLVHVK-DGIYASLVALQ 698 (703)
Q Consensus 679 th~eLl~~~-~g~Y~~l~~~q 698 (703)
+..++++.| ...-++|++..
T Consensus 233 ~t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 233 STADVLASPLHELTKRLIESH 253 (267)
T ss_pred ChhhhhcCCccHHHHHHHHHH
Confidence 988888643 34556676654
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7e-34 Score=326.01 Aligned_cols=193 Identities=24% Similarity=0.329 Sum_probs=158.0
Q ss_pred EEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEE-----------ECCeeCCCCCH
Q 005314 462 QHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHIT-----------LDGVEIQKLQL 530 (703)
Q Consensus 462 ~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~-----------idG~di~~~~~ 530 (703)
++++++|.. +..+|++++ ++++|++++||||||||||||+++|+|++.|+.|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 348999963 346899999 9999999999999999999999999999999999998 99999876532
Q ss_pred H--HHhcc----eEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 K--WLRQQ----MGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~--~lR~~----i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
+ ..+.+ +.+++|.|.+|.+|++||+.+. + ..+++.++++..++.+ .....-.+||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~ 218 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLEN-----------ILDRDISELSGGEL 218 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCch-----------hhcCChhhCCHHHH
Confidence 2 11223 4455567778899999999753 1 2345566665555432 23334567999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCC
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNG 672 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G 672 (703)
||++|||||+++|++||||||||+||+.+...+.+.|.++.+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999987668999999999999865 9999999873
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.9e-33 Score=323.83 Aligned_cols=222 Identities=21% Similarity=0.280 Sum_probs=165.7
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC---CCCCCeEEECCeeCCCC--C--
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFY---DPDTGHITLDGVEIQKL--Q-- 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y---~p~~G~I~idG~di~~~--~-- 529 (703)
..|+++|++|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|.. .|.+|+|.+.++++... +
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 36999999999973 35999999999999999999999999999999999864 58999998755443211 1
Q ss_pred ----------HHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHH----HHHHHHHHhcH----------HHHHHHhh
Q 005314 530 ----------LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEA----EVLAAAELANA----------HQFISSLK 585 (703)
Q Consensus 530 ----------~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~----ei~~A~~~a~l----------~~~I~~Lp 585 (703)
...+++.+++++|+|.+...+..+|+........+.+ ++.++.+..++ ...+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 1224567899999887655455555432111111222 23333332221 2223332
Q ss_pred ccccc-hhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-c
Q 005314 586 QGYDT-IVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-A 663 (703)
Q Consensus 586 ~G~dT-~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-a 663 (703)
|++. .....-.+||||||||++|||||+.+|+||||||||++||+++...+.+.|.++ ++|+|+|||++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 3321 122234679999999999999999999999999999999999999999999886 7899999999999876 9
Q ss_pred CEEEEEeCCEEE-EecChhHHhc
Q 005314 664 DLIAVVKNGVIA-EKGKHETLVH 685 (703)
Q Consensus 664 D~I~vl~~G~Iv-e~Gth~eLl~ 685 (703)
|+|++|++|+++ ..|++++...
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999996 6888876554
No 357
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.9e-33 Score=270.36 Aligned_cols=214 Identities=23% Similarity=0.443 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.+++++|+.+|. +..+++|+||+++||+..+++|+||+||||.+++|+||.+|++|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 478999999997 5689999999999999999999999999999999999999999999999998864 567799
Q ss_pred EEEccCCCCCc-ccHHHHHhcCC-CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 538 GLVSQEPVLFN-DTVRVNIAYGK-EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 538 ~~V~Qe~~LF~-gTIreNI~~g~-~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
||.|.|--|+. .|+.|-|.|.. -.....+|+.+- +..|+.++. +--.-..+-..||-|..|+|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhc
Confidence 99999999995 59999999873 224555565443 566777763 2222234567899999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
+|+++|||||+|+|||-+.+.+.+++.++. +|.|+|+-+||++.+.. ||+++.|++|+.|-.|+-++.-+
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999999998765 68999999999999965 99999999999999999888765
No 358
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.5e-33 Score=318.63 Aligned_cols=221 Identities=29% Similarity=0.453 Sum_probs=187.6
Q ss_pred CcEEEEEEEEEcCCCC--CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC---CCCeEEECCeeCCCCCHH
Q 005314 457 GDIEFQHITFKYPARP--DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP---DTGHITLDGVEIQKLQLK 531 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~--~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p---~~G~I~idG~di~~~~~~ 531 (703)
-+++|+|+++..+..+ .+.+|+|||.+++|||.+||.||||||||||++.|+|.-.+ .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 4689999999987542 47899999999999999999999999999999999999975 799999999 445678
Q ss_pred HHhcceEEEccCCCCCcc-cHHHHHhcCC----CCCCCHHHHHHHHHHhcHHHHHHHhhcc--ccchhcC-CCCCCChhH
Q 005314 532 WLRQQMGLVSQEPVLFND-TVRVNIAYGK----EGNATEAEVLAAAELANAHQFISSLKQG--YDTIVGE-RGIQLSGGQ 603 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~LF~g-TIreNI~~g~----~~~~t~~ei~~A~~~a~l~~~I~~Lp~G--~dT~vGe-~G~~LSGGQ 603 (703)
.+|+..|||+||..++.. ||+|++.|.. +.+.+.+|..+ ..++.|..|.-- =||.||. .+..+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~-----~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRE-----RVEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCChhhccceecCCCCCccccch
Confidence 899999999999999876 9999998873 12224444332 244445555333 5688874 346899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeCCEEEEecCh
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLST--IRDADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlst--i~~aD~I~vl~~G~Ive~Gth 680 (703)
|+|++||.-|+.||+||+||||||+||+.+...|.+.|++++ +|||||+.=|++|. .+..|++++|.+|+++-.|+-
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 999999999999999999999999999999999999999865 48999999999985 578999999999999999998
Q ss_pred hHHhc
Q 005314 681 ETLVH 685 (703)
Q Consensus 681 ~eLl~ 685 (703)
+++.+
T Consensus 256 ~~~~~ 260 (613)
T KOG0061|consen 256 RELLE 260 (613)
T ss_pred HHHHH
Confidence 87764
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=305.35 Aligned_cols=209 Identities=33% Similarity=0.492 Sum_probs=167.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++|++++|+ ++++|+|+||++.+|++++|||+||||||||+++|.|...|++|+|...+. -+|
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 489999999996 457999999999999999999999999999999999999999999998762 269
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCC--HHHHHHHHH---------H----------------hcHHHHHHHhhcccc
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEGNAT--EAEVLAAAE---------L----------------ANAHQFISSLKQGYD 589 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~~~t--~~ei~~A~~---------~----------------a~l~~~I~~Lp~G~d 589 (703)
+|++|++.+.+. |+++.+..|.. +.. ..++.++.. . +.+...+..| |+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~ 145 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFG-ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFP 145 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCC
Confidence 999999999966 99999988832 110 111111110 0 1111222222 222
Q ss_pred chhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEE
Q 005314 590 TIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAV 668 (703)
Q Consensus 590 T~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~v 668 (703)
.. -..-..||||||-|++|||||+.+|+||||||||.+||.++-.-+.+.|.+. +| |+|+|||+-..+.+ |++|+-
T Consensus 146 ~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ 222 (530)
T COG0488 146 DE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILE 222 (530)
T ss_pred cc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEE
Confidence 22 2233579999999999999999999999999999999999999999999864 45 99999999999976 999999
Q ss_pred EeCCEEE-EecChhHHhcc
Q 005314 669 VKNGVIA-EKGKHETLVHV 686 (703)
Q Consensus 669 l~~G~Iv-e~Gth~eLl~~ 686 (703)
+++|++. ..|+|+.-++.
T Consensus 223 ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 223 LDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred ecCCceeEecCCHHHHHHH
Confidence 9999875 67899887764
No 360
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=3.2e-33 Score=262.18 Aligned_cols=136 Identities=40% Similarity=0.696 Sum_probs=125.0
Q ss_pred ccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCccc-HHHHH
Q 005314 477 FRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT-VRVNI 555 (703)
Q Consensus 477 L~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gT-IreNI 555 (703)
|+|+||+|++|++++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999875 9999
Q ss_pred hcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCc
Q 005314 556 AYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATS 627 (703)
Q Consensus 556 ~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTS 627 (703)
..++++.++++..++.+ ..++.++.+..+||||||||++||||++++|++|||||||+
T Consensus 80 -------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23456777777766533 56888999999999999999999999999999999999996
No 361
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=250.01 Aligned_cols=194 Identities=27% Similarity=0.425 Sum_probs=162.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC---CCeEEECCeeCCCCCHHHHh
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD---TGHITLDGVEIQKLQLKWLR 534 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~---~G~I~idG~di~~~~~~~lR 534 (703)
.+.++||+.+.|+ .-.|-++||+|.+||++-|.||||||||||+.-+.|+.+++ +|++.+|++++..+.- -|
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~q 76 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQ 76 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hh
Confidence 4678999998875 46899999999999999999999999999999999999986 8999999999988764 56
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCCCCC----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 535 QQMGLVSQEPVLFND-TVRVNIAYGKEGNA----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~g-TIreNI~~g~~~~~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
+|+|+.+||++||.- ++.+||.|..+++. -......|++..++.++..+-| .+||||||-|||+
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHH
Confidence 899999999999975 99999999855433 3334566777777777766655 6899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHH-H-cCCceEEEEccCchHHhhcCEEE
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALER-V-MVGRTTVVIAHRLSTIRDADLIA 667 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~-~-~~~rT~IvIaHrlsti~~aD~I~ 667 (703)
-|+|+..|+.|+||||.|.||..-..++.+-... + ..+--+|.|||++.-+..-.|++
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVi 205 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVI 205 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeee
Confidence 9999999999999999999999887777665532 2 23778999999998877433333
No 362
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-31 Score=261.94 Aligned_cols=226 Identities=25% Similarity=0.390 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC--CCCCCCeEEECCeeCCCCCHHH-Hh
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF--YDPDTGHITLDGVEIQKLQLKW-LR 534 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~--y~p~~G~I~idG~di~~~~~~~-lR 534 (703)
.++++|++.+-.++ +.||+++||+|++||+.||.||||||||||.+.|+|. |++++|+|++||.||.++++.+ -|
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47899999887532 4899999999999999999999999999999999997 5899999999999999999875 68
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCCC-----C---CCHHHHHHHHHHhcHHH-HHHHhhccccchhcCCCCCCChhHH
Q 005314 535 QQMGLVSQEPVLFND-TVRVNIAYGKEG-----N---ATEAEVLAAAELANAHQ-FISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~g-TIreNI~~g~~~-----~---~t~~ei~~A~~~a~l~~-~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
.-|.+.+|.|.=+.| |+.+=++.+.+. . ...+++.++++..++.+ |.+ -.|. ..||||+|
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~-------R~vN---~GFSGGEk 150 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE-------RYVN---EGFSGGEK 150 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhh-------cccC---CCcCcchH
Confidence 899999999999998 888877654211 0 12456777888877766 332 2233 46999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhc--CEEEEEeCCEEEEecChh
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDA--DLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~a--D~I~vl~~G~Ive~Gth~ 681 (703)
-|.-|+-+++-+|++.|||||-|+||..+-+.|-+.+..++ +++++++|||.-..+... |++.||-+|+||..|..
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-
Confidence 99999999999999999999999999999999999998876 489999999999988875 99999999999999998
Q ss_pred HHhcc-CCcHHHHHHH
Q 005314 682 TLVHV-KDGIYASLVA 696 (703)
Q Consensus 682 eLl~~-~~g~Y~~l~~ 696 (703)
||+.. +..-|..+..
T Consensus 230 el~~~le~~gy~~~~~ 245 (251)
T COG0396 230 ELAEELEEKGYDWLKE 245 (251)
T ss_pred HHHHHHHHhchHHhhh
Confidence 77641 1234665554
No 363
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=1.5e-31 Score=264.43 Aligned_cols=196 Identities=27% Similarity=0.389 Sum_probs=160.5
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCc--cc
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN--DT 550 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~--gT 550 (703)
..++|+||||++++||+++|||++|||||||+++|.|.|+|++|+|.++|+ |+.+---..=|+ -|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccc
Confidence 458999999999999999999999999999999999999999999999993 333333233333 48
Q ss_pred HHHHHhcCC-CCCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeecc
Q 005314 551 VRVNIAYGK-EGNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEA 625 (703)
Q Consensus 551 IreNI~~g~-~~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEa 625 (703)
-||||.+-. -...+. +.+.+..+-|.+.+||. .| -.+.|-|.+-|||.|-|.--+|+||||||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~-------~P----vktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID-------QP----VKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhh-------Cc----hhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 999995431 111233 44556666677777764 33 357999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhccCCcHHHHHHH
Q 005314 626 TSALDAESERVIQDALERV-MVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696 (703)
Q Consensus 626 TSaLD~~se~~v~~~l~~~-~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~ 696 (703)
.|.-|+.=.++=++.+.+. .+++|+|+|+|.++.++. ||++++|++|+|...|+.++.++. |.....
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~----Y~~~~~ 243 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA----YEEDLA 243 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH----HHHhhh
Confidence 9999999776777777776 778999999999999976 999999999999999999999865 665543
No 364
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=4.2e-32 Score=257.19 Aligned_cols=215 Identities=22% Similarity=0.402 Sum_probs=186.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC-eeCCCCCHH-HHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG-VEIQKLQLK-WLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG-~di~~~~~~-~lR~ 535 (703)
-++++||+.++++ -.+|+++||+|.|||.-+|+||+|+||||++.+|.|-.+|+.|+|+++| .|+..++.. --|.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4789999999974 4689999999999999999999999999999999999999999999999 999998854 5688
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCCCC-------------CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 536 QMGLVSQEPVLFND-TVRVNIAYGKEG-------------NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 536 ~i~~V~Qe~~LF~g-TIreNI~~g~~~-------------~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
-||--+|.|..|.. |++||+.+.-+. ...+++|.+.+...++.+- ...-...||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-----------~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-----------RDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-----------hhhhhhhhcc
Confidence 89999999999976 999999765211 1122346666655555433 3334578999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecCh
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth 680 (703)
||||++-|+.-+..+|++|+||||++++-.+-+...-+-|..+++++++++|-|++..++. ||+|-||..|.|..+|+-
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999888888889999999999999999999999976 999999999999999999
Q ss_pred hHHhcc
Q 005314 681 ETLVHV 686 (703)
Q Consensus 681 ~eLl~~ 686 (703)
+++-+.
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 998754
No 365
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.98 E-value=7.6e-29 Score=264.16 Aligned_cols=465 Identities=16% Similarity=0.200 Sum_probs=316.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHH---HHHHhHHHHHHHHHHHHHHHHHHH
Q 005314 187 AIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIG---ARLSADSASVRSVVGDALGLHVQN 263 (703)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~---~rl~~D~~~v~~~~~~~~~~~~~~ 263 (703)
++-....+..-.|+..+.+-.++.++....|+..+... .|+.- .+.-|.+- +++++|+......+.+....+.-.
T Consensus 167 aiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snq-TyY~V-sn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP 244 (728)
T KOG0064|consen 167 AIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQ-TFYKV-SNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKP 244 (728)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ceEEE-ecccchhcCccchhHHHHHHHHHHHHHHHHhhhhH
Confidence 44444556666677777888888888888888887766 55542 23333333 468999988888777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHhCchHH
Q 005314 264 IATLFAGVIIAFEANWQLALI-VLVLVPLLVLNGYAHMKFLKGFS---ADSKKMYEEASQVANDAVGSIRTVASFCAEEK 339 (703)
Q Consensus 264 ~~~~i~~~i~~~~~~~~lalv-~l~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~ 339 (703)
++-++.+...+.-..-....- ..+...++++...+.....-++. .+..........+=+..+.|.++|..|+-.+.
T Consensus 245 ~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~Ghkv 324 (728)
T KOG0064|consen 245 VLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKV 324 (728)
T ss_pred HHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHH
Confidence 655544433333222111111 11111112222222222222333 33333444456667788899999999999999
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHcCCCC--------HHHHHHHHHH
Q 005314 340 VMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACS-F------YAGARLVEAGKTT--------FQEVFRVFFA 404 (703)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~g~~lv~~g~~s--------~g~~~~~~~~ 404 (703)
+++..++.+..........-....+...+-+|++--++... + .+.+-....+... ...++..=-+
T Consensus 325 E~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~L 404 (728)
T KOG0064|consen 325 ELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRL 404 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHH
Confidence 99999999998888877777777777777776654322111 0 0001111111111 1223333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cc--------cCCCCCC-------CCcccc-----CCCCcEEE
Q 005314 405 LSMAATGLSQSGILAPEASRAKSAIASVYAILDR---KS--------KIDSSDE-------SGTTIE-----NVKGDIEF 461 (703)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~---~~--------~~~~~~~-------~~~~~~-----~~~~~I~~ 461 (703)
+...+.++..++....++.+....-.|++..++- .. ..+..+. .+.+.+ .....|.+
T Consensus 405 L~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~l 484 (728)
T KOG0064|consen 405 LLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIIL 484 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEE
Confidence 4556667788888888888888888888754421 10 0000000 000000 01235999
Q ss_pred EEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEc
Q 005314 462 QHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVS 541 (703)
Q Consensus 462 ~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 541 (703)
+||-.--|+. ..+...++|.|+||-.+.|.||+|||||+|.+.|.|+++...|...+-- +.+|-|+|
T Consensus 485 enIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIP 551 (728)
T KOG0064|consen 485 ENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIP 551 (728)
T ss_pred ecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEecc
Confidence 9999988864 3588999999999999999999999999999999999999888876522 24699999
Q ss_pred cCCCCCcccHHHHHhcCCC------CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 542 QEPVLFNDTVRVNIAYGKE------GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 542 Qe~~LF~gTIreNI~~g~~------~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
|.|+.=-||+||.|.|-+. .+.+|.++++.++.+.++-.+ .-..|+|... +----||||+|||+++||.+++
T Consensus 552 QRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~da~~-dWkd~LsgGekQR~~mARm~yH 629 (728)
T KOG0064|consen 552 QRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWDAVR-DWKDVLSGGEKQRMGMARMFYH 629 (728)
T ss_pred CCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChhhhc-cHHhhccchHHHHHHHHHHHhc
Confidence 9999999999999998631 257889999999999998544 4466777654 3445799999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVK 670 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~ 670 (703)
+|+.-+|||+|||+-.+-|..+.++.+.. |-+.|-||||++..+.-..++-.+
T Consensus 630 rPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~d 682 (728)
T KOG0064|consen 630 RPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEFD 682 (728)
T ss_pred CcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhcc
Confidence 99999999999999999999999999776 889999999999988766665553
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5.3e-31 Score=268.44 Aligned_cols=192 Identities=23% Similarity=0.344 Sum_probs=129.5
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHH-HhHcCCCCCCCCeEEECC-------eeC---CCCCHHHHh-cceEEE
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVI-SLLQRFYDPDTGHITLDG-------VEI---QKLQLKWLR-QQMGLV 540 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~-~lL~g~y~p~~G~I~idG-------~di---~~~~~~~lR-~~i~~V 540 (703)
+.++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+.. ..+ ...+...++ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 46799999999999999999999999999995 4442 134432210 111 011111122 233444
Q ss_pred ccCCC-CCc-----ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCChhHHHHHHHHHHh
Q 005314 541 SQEPV-LFN-----DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 541 ~Qe~~-LF~-----gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQkQRiaIARAl 613 (703)
.|++. .++ +++.+...+... -...++..+. .+.+..+ |+.. .......+||||||||++||||+
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral 152 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRL-LFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQI 152 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHH-HhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHH
Confidence 44443 111 122222211100 0001111110 1233333 3433 35667889999999999999999
Q ss_pred ccCC--CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------eCCEEEEec
Q 005314 614 VKAP--KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVV------KNGVIAEKG 678 (703)
Q Consensus 614 lk~p--~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl------~~G~Ive~G 678 (703)
+++| ++|||||||++||+.+...+.+.|.++. ++.|+|+|||+++.+..||+|++| ++|+|||+|
T Consensus 153 ~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9998 5999999999999999999999998764 578999999999999999999999 999999987
No 367
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.6e-30 Score=240.30 Aligned_cols=228 Identities=27% Similarity=0.457 Sum_probs=179.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC-----eeCCCCCHHH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG-----VEIQKLQLKW 532 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG-----~di~~~~~~~ 532 (703)
-+++++++..|.++ .-.+|+||++.|||..+|||+||||||||+++|.+-..|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 47889999999743 579999999999999999999999999999999999999999999965 4444444333
Q ss_pred ----HhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHH------HHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 533 ----LRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAA------ELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 533 ----lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~------~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
+|..-|+|.|+|. +-+|-.+.-|. ++. |++...- -.+.+.+|++...=. -+.+.+....+|||
T Consensus 83 RR~L~RTeWG~VhQnP~---DGLRm~VSAG~--NiG-ERlma~G~RHYG~iR~~a~~WL~~VEI~-~~RiDD~PrtFSGG 155 (258)
T COG4107 83 RRRLLRTEWGFVHQNPR---DGLRMQVSAGG--NIG-ERLMAIGARHYGNIRAEAQDWLEEVEID-LDRIDDLPRTFSGG 155 (258)
T ss_pred HHHHhhhccceeecCcc---ccceeeeccCC--ccc-hhHHhhhhhhhhhHHHHHHHHHHhcccC-cccccCcccccchH
Confidence 4556799999994 11111111110 111 1111110 012256777765432 34667888999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecC
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gt 679 (703)
.+||+-|||-|...|+++++||||-+||....+.+.+.++.+-. +-.+|+|||++...+- |||..||++|+++|.|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 99999999999999999999999999999999999999987643 6789999999999875 99999999999999999
Q ss_pred hhHHhccCCcHHHHHH
Q 005314 680 HETLVHVKDGIYASLV 695 (703)
Q Consensus 680 h~eLl~~~~g~Y~~l~ 695 (703)
-|..+..+.-.|.+|.
T Consensus 236 TDrvLDDP~hPYTQLL 251 (258)
T COG4107 236 TDRVLDDPHHPYTQLL 251 (258)
T ss_pred ccccccCCCCchHHHH
Confidence 8998887788898875
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=283.72 Aligned_cols=203 Identities=28% Similarity=0.386 Sum_probs=174.0
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
.-++++||+|+|+++ +.+++++||.|++|++||||||+|+|||||+|+|+|-..|.+|+|.++-. + +
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------K 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------E
Confidence 358999999999743 57999999999999999999999999999999999999999999988542 2 6
Q ss_pred eEEEccCC-CCC-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 537 MGLVSQEP-VLF-NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 537 i~~V~Qe~-~LF-~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
|||.+|+. .++ +.|+-|++.-+ .++..+.+++..+..-+...-- +...-..||||||-|+++|+.++
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~-~~~~~e~~~r~~L~~f~F~~~~----------~~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEG-FPDGDEQEVRAYLGRFGFTGED----------QEKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhh-CccccHHHHHHHHHHcCCChHH----------HhCchhhcCHhHHHHHHHHHHhc
Confidence 99999998 444 34999999877 4455577888887776653321 12344579999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEEe-cChhHHhcc
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEK-GKHETLVHV 686 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~-Gth~eLl~~ 686 (703)
.+|.+|||||||..||.+|-..+.++|... .-|+|+|||+...+.. |++|+++++ ++.+. |+|++.++.
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999999999999999999999887 5799999999999976 999999999 77766 899887754
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.4e-30 Score=268.56 Aligned_cols=192 Identities=27% Similarity=0.417 Sum_probs=140.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCChHHHHHhHc-----C-CC----CCCCC-----------eEEECCeeCCCCCHHHHh
Q 005314 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ-----R-FY----DPDTG-----------HITLDGVEIQKLQLKWLR 534 (703)
Q Consensus 476 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~-----g-~y----~p~~G-----------~I~idG~di~~~~~~~lR 534 (703)
-|+|+|++||.|..++|+|.||||||||++-++ + +. .|..+ .|.||..+|..- .++..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~-~rs~~ 88 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRT-PRSNP 88 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCC-CCCcH
Confidence 599999999999999999999999999998552 1 22 13333 355555555321 11111
Q ss_pred c---------------------------ceEEEccCCC-CCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhc
Q 005314 535 Q---------------------------QMGLVSQEPV-LFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQ 586 (703)
Q Consensus 535 ~---------------------------~i~~V~Qe~~-LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~ 586 (703)
. .+.|..++.. +.+.|+.||+.|... ....++.. +.+..+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~-~~~~~~~~---------~~L~~v-- 156 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFEN-IPKIARKL---------QTLCDV-- 156 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHh-hhhHHHHH---------HHHHHc--
Confidence 1 1334444433 234577777666521 11111222 233333
Q ss_pred cccc-hhcCCCCCCChhHHHHHHHHHHhccC---CCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh
Q 005314 587 GYDT-IVGERGIQLSGGQKQRVAIARAMVKA---PKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR 661 (703)
Q Consensus 587 G~dT-~vGe~G~~LSGGQkQRiaIARAllk~---p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~ 661 (703)
|++. ..+....+|||||+||++|||||+++ |+++||||||++||+++...+.+.|.++. ++.|+|+|+|++..++
T Consensus 157 gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~ 236 (261)
T cd03271 157 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK 236 (261)
T ss_pred CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5554 46888899999999999999999996 79999999999999999999999998865 4799999999999999
Q ss_pred hcCEEEEE------eCCEEEEecCh
Q 005314 662 DADLIAVV------KNGVIAEKGKH 680 (703)
Q Consensus 662 ~aD~I~vl------~~G~Ive~Gth 680 (703)
.||+|++| ++|+|+++|+.
T Consensus 237 ~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 237 CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 99999999 89999999973
No 370
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.9e-30 Score=256.69 Aligned_cols=212 Identities=24% Similarity=0.392 Sum_probs=163.2
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEc-cCCCCC-cccH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVS-QEPVLF-NDTV 551 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~-Qe~~LF-~gTI 551 (703)
.++.+|+||+|+||++++++|+||+||||++|+|.|+.-|++|.|.++|.+-.+-..+.+ +++++|. |...|. +--+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~-~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL-RSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHH-HHHHHHhhhhheeeeechh
Confidence 357899999999999999999999999999999999999999999999988766444444 4565553 333221 1112
Q ss_pred HHHHhcCC-CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCC
Q 005314 552 RVNIAYGK-EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALD 630 (703)
Q Consensus 552 reNI~~g~-~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD 630 (703)
.|-+..-+ -.++++++..+- +..+.+-| +++..+-..-..||-|||-|.-||-||+++|+||+|||||=+||
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r-----~~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAER-----LDFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHH-----HHHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 22221110 012334333221 22333333 56666777788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--cCCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhccCCcHHHHH
Q 005314 631 AESERVIQDALERV--MVGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHVKDGIYASL 694 (703)
Q Consensus 631 ~~se~~v~~~l~~~--~~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l 694 (703)
......|.+.+++. ..+.|++..||.++-+. -||||+++++|+++..|+.++|.+. -|.|+++
T Consensus 189 V~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~-f~~~k~~ 254 (325)
T COG4586 189 VNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ-FGPYKEF 254 (325)
T ss_pred hhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH-hCCceEE
Confidence 99999999999875 35789999999999885 5999999999999999999999886 6656544
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=3.8e-30 Score=256.32 Aligned_cols=164 Identities=25% Similarity=0.308 Sum_probs=135.3
Q ss_pred cceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC---------CCeEEECCeeCCCCCHHHHhcceEEEccCCCCCc
Q 005314 478 RDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD---------TGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN 548 (703)
Q Consensus 478 ~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~---------~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~ 548 (703)
+++++++++| +++|+||||||||||+++|.++..|. .|++.++|.++... ..+++|++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 99999999999999999999998665 34688888877542 2468999999999988
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc----cCCCEEEeec
Q 005314 549 DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV----KAPKILLLDE 624 (703)
Q Consensus 549 gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll----k~p~ILlLDE 624 (703)
|+.. .++++.++++. ++-.+ ....+||||||||++||||++ ++|+++||||
T Consensus 89 --------~~~~---~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 --------YSII---SQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred --------eeEE---ehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 3311 13455555444 22223 345679999999999999986 5779999999
Q ss_pred cCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q 005314 625 ATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKN 671 (703)
Q Consensus 625 aTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~ 671 (703)
||++||+++...+.+.|.++.++.|+|+|||++..+..||+|+.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999999999999998778999999999999999999999963
No 372
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-29 Score=238.32 Aligned_cols=188 Identities=24% Similarity=0.408 Sum_probs=158.7
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEE
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~ 539 (703)
+.+|++..- .+..+|.++||++.|||.+-|+||||||||||+++|.|+.+|++|+|.++|.++.... +.+++..-|
T Consensus 4 ~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 4 EAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred hhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 345555433 3567999999999999999999999999999999999999999999999999998754 445788888
Q ss_pred EccCCCCC-cccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 540 VSQEPVLF-NDTVRVNIAYGKE--GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 540 V~Qe~~LF-~gTIreNI~~g~~--~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
+...+-+= .-|+.||+.|... ...+++.+++|+..+++.++. |.+| .+||-||+.|+||||-++..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-------dlp~----~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-------DLPV----GQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-------ccch----hhcchhHHHHHHHHHHHcCC
Confidence 88888774 5599999998732 125678999999999997763 3344 47999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHH-HcCCceEEEEccCchHHhh
Q 005314 617 PKILLLDEATSALDAESERVIQDALER-VMVGRTTVVIAHRLSTIRD 662 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~-~~~~rT~IvIaHrlsti~~ 662 (703)
+|+.||||||+|||.+.+..+-..+.. ..+|-.||..||...-+..
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999999999999999999999888865 4568899999999877643
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=2.3e-29 Score=254.30 Aligned_cols=192 Identities=17% Similarity=0.176 Sum_probs=148.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEee-CCCEEEEEcCCCCChHHHHHhHc-CCCCCCCCeEEECCeeCCCCCHHHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIP-SGKMVALVGESGSGKSTVISLLQ-RFYDPDTGHITLDGVEIQKLQLKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~-~G~~vaiVG~SGsGKSTL~~lL~-g~y~p~~G~I~idG~di~~~~~~~lR~ 535 (703)
.|+++|+. +|.++ ++++|... +|++++|+|+||||||||+++|. .+|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 68899988 77532 56777654 59999999999999999999999 5777777766654 2233444456678
Q ss_pred ceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhcc-ccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 536 QMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQG-YDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 536 ~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G-~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
.|++++|++.. ...+++++ ..+.++..+.. .++.| +++.+.....+||||||||++||||++
T Consensus 77 ~v~~~f~~~~~----~~~~~r~~---gl~~~~~~~~~----------~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 77 EVSFTFQLGGK----KYRVERSR---GLDYDQFTRIV----------LLPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred EEEEEEEECCe----EEEEEEec---CCCHHHHHHhh----------hhhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 89999999832 22333333 34555554432 12333 567777888999999999999999997
Q ss_pred c----------CCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCEE
Q 005314 615 K----------APKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRD-ADLIAVVKNGVI 674 (703)
Q Consensus 615 k----------~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~-aD~I~vl~~G~I 674 (703)
. +|+++||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|-+
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 4 6789999999999999999999999988765 7899999999998755 899999998843
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=8.9e-29 Score=255.12 Aligned_cols=191 Identities=27% Similarity=0.335 Sum_probs=140.2
Q ss_pred cEEEEEEEEE-cCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHc----------------CCCCCCCC----
Q 005314 458 DIEFQHITFK-YPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ----------------RFYDPDTG---- 516 (703)
Q Consensus 458 ~I~~~~vsF~-Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~----------------g~y~p~~G---- 516 (703)
.|+++| |+ |. +..++.+++ |++++|+||||||||||+++|. ++..+.+|
T Consensus 3 ~i~~~n--fksy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~ 72 (243)
T cd03272 3 QVIIQG--FKSYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVM 72 (243)
T ss_pred EEEEeC--ccCcc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCc
Confidence 355554 44 54 345777876 8899999999999999999997 44555556
Q ss_pred ----eEEECCeeCCCC---CHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHH--HHhhcc
Q 005314 517 ----HITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFI--SSLKQG 587 (703)
Q Consensus 517 ----~I~idG~di~~~---~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I--~~Lp~G 587 (703)
+|.+++.+-... ....+++++++++|++.++. ..++.+++..+++..++...- ..+|+|
T Consensus 73 ~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~------------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg 140 (243)
T cd03272 73 SAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK------------KNVTKNDVMNLLESAGFSRSNPYYIVPQG 140 (243)
T ss_pred eEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC------------eEcCHHHHHHHHHHcCCCCCCCcEEEEcC
Confidence 555555322110 12235667777777765532 235667777777776654310 012333
Q ss_pred ccc-------hhcCCCCCCChhHHHHHHHHHHhc----cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccC
Q 005314 588 YDT-------IVGERGIQLSGGQKQRVAIARAMV----KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHR 656 (703)
Q Consensus 588 ~dT-------~vGe~G~~LSGGQkQRiaIARAll----k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHr 656 (703)
..+ ...+++.+||||||||++||||++ ++|++|||||||++||+++.+.+.+.|.++.+++|+|+++|+
T Consensus 141 ~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~ 220 (243)
T cd03272 141 KINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR 220 (243)
T ss_pred chHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 322 235788899999999999999996 468999999999999999999999999998778889999999
Q ss_pred chHHhhcCEEEEEe
Q 005314 657 LSTIRDADLIAVVK 670 (703)
Q Consensus 657 lsti~~aD~I~vl~ 670 (703)
....+.||+|++|+
T Consensus 221 ~~~~~~~d~i~~l~ 234 (243)
T cd03272 221 PELLEVADKFYGVK 234 (243)
T ss_pred HHHHhhCCEEEEEE
Confidence 99889999999996
No 375
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.95 E-value=7.7e-25 Score=225.36 Aligned_cols=273 Identities=22% Similarity=0.339 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 138 LLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCF 217 (703)
Q Consensus 138 ~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~ 217 (703)
+++++++++.++..++.|++++.+++.+.............+.+.++++.++.........+...+.+.++..++|.+++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888889999999999865432211112222222333333444455555556677899999999999999
Q ss_pred HHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 218 EKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLNGY 297 (703)
Q Consensus 218 ~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~~~ 297 (703)
+|++++|..||++ +++|++.+|+++|++.+++.+...+..++..+..++++++++++++|++++++++++|++.+...
T Consensus 82 ~~~~~~~~~~~~~--~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 82 EKLLRLPYSYFDK--NSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHSHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhh--hcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhh
Confidence 9999999999985 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 298 AHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVY 377 (703)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (703)
...++.++..++..+..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+.....++...+..++..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHH
Q 005314 378 ACSFYAGARL-VEAGKTTFQEVFRVFFALSMAATGL 412 (703)
Q Consensus 378 ~~~~~~g~~l-v~~g~~s~g~~~~~~~~~~~~~~~~ 412 (703)
++++++|+++ +.+|.+++|++++++.+......|+
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 9999999999 9999999999999998888877764
No 376
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.7e-28 Score=223.67 Aligned_cols=203 Identities=30% Similarity=0.410 Sum_probs=149.1
Q ss_pred cEEEEEEEEEcC----CCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC--C--eeCCCCC
Q 005314 458 DIEFQHITFKYP----ARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD--G--VEIQKLQ 529 (703)
Q Consensus 458 ~I~~~~vsF~Y~----~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id--G--~di~~~~ 529 (703)
.+.++||+.++- ++-.-|||+|+||+++.||++++=||||||||||++.|-+-|.|++|+|.+. | .|+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 367777765552 2223589999999999999999999999999999999999999999999984 3 4555544
Q ss_pred HH----HHhcceEEEccCCCCCc-----ccHHHHH-hcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCC
Q 005314 530 LK----WLRQQMGLVSQEPVLFN-----DTVRVNI-AYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQL 599 (703)
Q Consensus 530 ~~----~lR~~i~~V~Qe~~LF~-----gTIreNI-~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~L 599 (703)
+. --|+.||||+|---... +-+.|-+ ..|-+.+.-.++....+..-|+.+-+.+|| ...+
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------Cccc
Confidence 33 35688999999432221 1122222 233111111122333333444444444443 5789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhh-cCEEEEEe
Q 005314 600 SGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERV-MVGRTTVVIAHRLSTIRD-ADLIAVVK 670 (703)
Q Consensus 600 SGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~-~~~rT~IvIaHrlsti~~-aD~I~vl~ 670 (703)
|||++||+-|||.++-|-+||+|||||++||+.+.+.|.+.|.+. .+|..+|=|=|+-+.=.. |||++-|.
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999999999999999999999999999999999999999875 467888889999876443 99998875
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=2.2e-27 Score=246.00 Aligned_cols=183 Identities=19% Similarity=0.276 Sum_probs=140.6
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCCCC-CCeEEECCe-eCCCCC--HHHHhcceEEEccCCCC---------C-cccHH
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYDPD-TGHITLDGV-EIQKLQ--LKWLRQQMGLVSQEPVL---------F-NDTVR 552 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~p~-~G~I~idG~-di~~~~--~~~lR~~i~~V~Qe~~L---------F-~gTIr 552 (703)
..+++||||||||||||++.|.++..|. .|+++..|. |+-... ....+..|++++|++.. . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6699999999999999999999999886 568988886 432111 11234599999999632 1 45888
Q ss_pred HHHhcCCC-------CCCCHHHHHHHHHHhcHH----HH------HHHhhccccchhcCCCCCCChhHHHHHHHHHHhc-
Q 005314 553 VNIAYGKE-------GNATEAEVLAAAELANAH----QF------ISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV- 614 (703)
Q Consensus 553 eNI~~g~~-------~~~t~~ei~~A~~~a~l~----~~------I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll- 614 (703)
+||.++.. .....+++.++++.+++. .| |.++=+. .........+||||||||++|||||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 88866521 123457788888888763 01 1110000 12334567799999999999999997
Q ss_pred ---cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q 005314 615 ---KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVK 670 (703)
Q Consensus 615 ---k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~ 670 (703)
++|+++||||||++||+++...+.+.|.++.++.|+|+||||.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999999888899999999999999999999875
No 378
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=5.3e-27 Score=280.93 Aligned_cols=217 Identities=22% Similarity=0.401 Sum_probs=187.4
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC-CHHHHhc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL-QLKWLRQ 535 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~-~~~~lR~ 535 (703)
..+..+|++..|+.+ +. +.+++|+.|++||+.++.|+|||||||+++++.|...|++|++.++|.++..- +....|+
T Consensus 563 ~~~~~~~L~k~y~~~-~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK-DG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecch-hh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 368899999999865 22 89999999999999999999999999999999999999999999999999765 4456999
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCC-CCCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 536 QMGLVSQEPVLFND-TVRVNIAYGK-EGNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 536 ~i~~V~Qe~~LF~g-TIreNI~~g~-~~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
+|||.||+..|+.. |.||.+.+.. -..... +.+...++..++.++. +++ -..+|||+|.||++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~-------~~~----~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYA-------NKQ----VRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhh-------ccc----hhhCCCcchhhHHH
Confidence 99999999999876 9999996652 112222 2356666666665543 333 46899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCC-ceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVMVG-RTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~-rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|-|++.+|++++|||||+++|+.+++.+++.+.++.++ +.+|+.||-+..... |||+..|-+|++..-|+-++|-++
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 99999999999999999999999999999999998764 499999999999866 999999999999999999999865
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=1.1e-26 Score=232.91 Aligned_cols=163 Identities=25% Similarity=0.281 Sum_probs=132.4
Q ss_pred eeEEeeCCCEEEEEcCCCCChHHHHHhH----cCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCC-----CCCcc-
Q 005314 480 LCLAIPSGKMVALVGESGSGKSTVISLL----QRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEP-----VLFND- 549 (703)
Q Consensus 480 isl~I~~G~~vaiVG~SGsGKSTL~~lL----~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~-----~LF~g- 549 (703)
.++++.+| +++|+||||||||||+..| .|...|..|.+..+...+.. ...+..|++++|++ .++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 9999999999999999998 49988988877622222222 34567899999998 44432
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH------HHHHHHhccCCCEEEee
Q 005314 550 TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR------VAIARAMVKAPKILLLD 623 (703)
Q Consensus 550 TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR------iaIARAllk~p~ILlLD 623 (703)
|+.||+.++ + ++++.+.+ .+...+||+||+|| +|||||++.+|+++|||
T Consensus 92 ~~~~~~~~~-~----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 92 AILENVIFC-H----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred hHhhceeee-c----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 999999886 2 33433222 45667999999996 79999999999999999
Q ss_pred ccCcCCCHHHHH-HHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeC
Q 005314 624 EATSALDAESER-VIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKN 671 (703)
Q Consensus 624 EaTSaLD~~se~-~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~ 671 (703)
|||++||+++.. .+.+.|.++.+ ++|+|+|||++..+..||+|++|++
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 999999999999 99999988765 7899999999999999999999964
No 380
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=1.7e-27 Score=221.91 Aligned_cols=208 Identities=24% Similarity=0.386 Sum_probs=175.5
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
++++||+..- -|-.+|.++..||.+=+|||+|||||||+.-+.|+. |-+|+|.++|.++..++..+|-++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5667776532 377899999999999999999999999999999987 88999999999999999999999999
Q ss_pred EEccCC-CCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc--
Q 005314 539 LVSQEP-VLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK-- 615 (703)
Q Consensus 539 ~V~Qe~-~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk-- 615 (703)
|..|.. -.|..-+..-+++.-+...--++|.+.|.+- +++-.+|.--.+||||++||+-+|-..+.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998855 5899999999998833211223455555444 45556667778999999999999988875
Q ss_pred ---CC--CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCch-HHhhcCEEEEEeCCEEEEecChhHHhc
Q 005314 616 ---AP--KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLS-TIRDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 616 ---~p--~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrls-ti~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|| ++||||||-+.||..-+..+-+.|.++. .|+|+|+-.|+|+ |++.||+++.++.|++..+|..+|.+.
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 34 7999999999999999888877777754 5999999999997 899999999999999999999999985
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=5.2e-27 Score=236.39 Aligned_cols=185 Identities=18% Similarity=0.215 Sum_probs=139.1
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHh-cc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLR-QQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR-~~ 536 (703)
.|+++|.- .|. +..+++++++ ++++|+|||||||||++++|. .++|.++. ..| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 57777766 675 3468999987 899999999999999999997 34564432 334 67
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHH-----HHHHHH----hcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEGNATEAEV-----LAAAEL----ANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei-----~~A~~~----a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
+++++|+..++.. |.++++.+.... ...+.+ ...... .+--..+..||++.++.++ .||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~----~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEI-IDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS----NLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeC-CCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh----hcCHHHHHH
Confidence 9999999887665 777777665211 000000 000000 0111134456888887654 799999999
Q ss_pred HHHHHHhc----cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q 005314 607 VAIARAMV----KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKN 671 (703)
Q Consensus 607 iaIARAll----k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~ 671 (703)
++||||++ ++|++++|||||++||+++...+.+.|.++.++.|+|+|||+....+.||+|++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999996 358999999999999999999999999998888999999999988899999999963
No 382
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=1.6e-25 Score=265.28 Aligned_cols=102 Identities=35% Similarity=0.556 Sum_probs=93.1
Q ss_pred cccc-hhcCCCCCCChhHHHHHHHHHHhccCC---CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh
Q 005314 587 GYDT-IVGERGIQLSGGQKQRVAIARAMVKAP---KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR 661 (703)
Q Consensus 587 G~dT-~vGe~G~~LSGGQkQRiaIARAllk~p---~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~ 661 (703)
|++. .++.....|||||||||+|||||+++| +++||||||++||.++...+.+.|.++. +|+|+|+|+|++..++
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5543 467888999999999999999999999 9999999999999999999999998875 5899999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhccCC
Q 005314 662 DADLIAVV------KNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 662 ~aD~I~vl------~~G~Ive~Gth~eLl~~~~ 688 (703)
.||+|++| ++|+|++.|+++++.+.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99999999 7999999999999997533
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=3.3e-25 Score=272.53 Aligned_cols=212 Identities=24% Similarity=0.421 Sum_probs=155.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHH---------hHcCCCCCCCC--------eEEE
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVIS---------LLQRFYDPDTG--------HITL 520 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~---------lL~g~y~p~~G--------~I~i 520 (703)
.|+++|++. ..|+|+||+|++|+.++|+|+||||||||++ +|.|...+..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 588888762 2699999999999999999999999999999 56664333221 2345
Q ss_pred CCeeCCCCC----------HHHHh---------cceE-----EEccC------------------C--------------
Q 005314 521 DGVEIQKLQ----------LKWLR---------QQMG-----LVSQE------------------P-------------- 544 (703)
Q Consensus 521 dG~di~~~~----------~~~lR---------~~i~-----~V~Qe------------------~-------------- 544 (703)
|-.++..-. -+++| ++.| +.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 544333211 11333 1111 22331 1
Q ss_pred ------CCCcc-cHHHHHhcCCCCCC-----CHHHHHHHHHHhcHHHHHHHhhccccch-hcCCCCCCChhHHHHHHHHH
Q 005314 545 ------VLFND-TVRVNIAYGKEGNA-----TEAEVLAAAELANAHQFISSLKQGYDTI-VGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 545 ------~LF~g-TIreNI~~g~~~~~-----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~-vGe~G~~LSGGQkQRiaIAR 611 (703)
..|.+ ||.||+.|+. .++ +.+++.+.++ .+..+ |++.. .+....+||||||||++|||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv-~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTA-YEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAY 822 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCH-HHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHH
Confidence 13333 8999998872 211 1223333321 23333 67665 78888999999999999999
Q ss_pred Hhc---cCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEe------CCEEEEecChh
Q 005314 612 AMV---KAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVVK------NGVIAEKGKHE 681 (703)
Q Consensus 612 All---k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~------~G~Ive~Gth~ 681 (703)
||+ ++|++|||||||++||.++.+.+.+.|.++. +|.|+|+|+|++..++.||+|++|+ +|++++.|+.+
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 998 6999999999999999999999999998875 5889999999999999999999996 79999999999
Q ss_pred HHhcc
Q 005314 682 TLVHV 686 (703)
Q Consensus 682 eLl~~ 686 (703)
+++..
T Consensus 903 el~~~ 907 (1809)
T PRK00635 903 ELIHL 907 (1809)
T ss_pred HHHhc
Confidence 99863
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.93 E-value=2.7e-26 Score=246.75 Aligned_cols=199 Identities=28% Similarity=0.392 Sum_probs=164.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|.|.||+|.|++.+ .+++++||-|.+++++|+|||+|+|||||+|++.|...|+.|.|.-.-+. ++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 589999999998654 89999999999999999999999999999999999999999999754332 33
Q ss_pred EEEcc---CCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 538 GLVSQ---EPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 538 ~~V~Q---e~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
++-.| |-..++-|.-||+.=--++.-..+++...+...|+......-| -.+||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHh
Confidence 33333 3445777888888543122345678888888888764443332 3589999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEE-ecChh
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAE-KGKHE 681 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive-~Gth~ 681 (703)
+.|.||||||||++||.++-....++|.+. ..++|+|+|+.-.|.. |++|.+.+||.+.. .|.+.
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 999999999999999999999999999887 5699999999999976 99999999998864 56543
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=4.7e-26 Score=266.85 Aligned_cols=198 Identities=28% Similarity=0.411 Sum_probs=169.4
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC--CCCCeEEECCeeCCCCCHHHHhcceEEEccCC-CCCcc
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD--PDTGHITLDGVEIQKLQLKWLRQQMGLVSQEP-VLFND 549 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~--p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~-~LF~g 549 (703)
..++|+|++=-++||..+||+|+||||||||+++|+|--. ..+|+|+|||.+..+ +.++|.+|||.|++ |+=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 5689999999999999999999999999999999998743 357999999998875 78999999999965 67777
Q ss_pred cHHHHHhcCC----CCCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCC-CEE
Q 005314 550 TVRVNIAYGK----EGNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAP-KIL 620 (703)
Q Consensus 550 TIreNI~~g~----~~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p-~IL 620 (703)
||||-+.|.. +.+.+++| ++++.+..++.++ =|..||.-|..||..||.|+.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998873 33455544 4555555555444 355699999999999999999999999999 899
Q ss_pred EeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeC-CEEEEecCh
Q 005314 621 LLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLST--IRDADLIAVVKN-GVIAEKGKH 680 (703)
Q Consensus 621 lLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlst--i~~aD~I~vl~~-G~Ive~Gth 680 (703)
+||||||+||+++...|++.++++. .|||+++.-|++|. .+..|+++.|++ |+.|-.|+-
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPL 1016 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCc
Confidence 9999999999999999999999865 69999999999995 488999999985 799977763
No 386
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.6e-24 Score=235.51 Aligned_cols=211 Identities=22% Similarity=0.361 Sum_probs=174.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHH-HHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLK-WLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~-~lR~~ 536 (703)
-++++|++.. ..++|+||++++||+++|.|--|||+|-++..|.|..++.+|+|.+||+++.--++. ..+.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3677777642 148999999999999999999999999999999999999999999999999888755 78899
Q ss_pred eEEEccCC----CCCcccHHHHHhcCCCCCCCHH-HHHHHHHHhcHHHHHHHhhccccchhc-CCCCCCChhHHHHHHHH
Q 005314 537 MGLVSQEP----VLFNDTVRVNIAYGKEGNATEA-EVLAAAELANAHQFISSLKQGYDTIVG-ERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 537 i~~V~Qe~----~LF~gTIreNI~~g~~~~~t~~-ei~~A~~~a~l~~~I~~Lp~G~dT~vG-e~G~~LSGGQkQRiaIA 610 (703)
|+|||-|- .+...+|++||.+........- -+..+.+.+-+.+++..| +..|+=- ..-..||||-.|++.||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l--~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL--RIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhc--CcccCCccchhhcCCchhhhhHHHH
Confidence 99999864 3456699999988621111111 355556666677888877 3333222 34568999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEe
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEK 677 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~ 677 (703)
|.|..+|+||||||||-++|.-+.+.|.+.|.++. +|+++|+|+-.+..+- .||||+||.+|+|+..
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999865 5899999999998764 7999999999999863
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=5e-24 Score=252.20 Aligned_cols=97 Identities=33% Similarity=0.570 Sum_probs=89.1
Q ss_pred cccc-hhcCCCCCCChhHHHHHHHHHHhcc---CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh
Q 005314 587 GYDT-IVGERGIQLSGGQKQRVAIARAMVK---APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR 661 (703)
Q Consensus 587 G~dT-~vGe~G~~LSGGQkQRiaIARAllk---~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~ 661 (703)
|++. .++....+|||||+||++|||||++ +|+++||||||++||+++.+.+++.|.++. +|.|+|+|+|++..++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5544 4688889999999999999999997 599999999999999999999999998875 5899999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhHH
Q 005314 662 DADLIAVV------KNGVIAEKGKHETL 683 (703)
Q Consensus 662 ~aD~I~vl------~~G~Ive~Gth~eL 683 (703)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=5.5e-25 Score=227.36 Aligned_cols=184 Identities=18% Similarity=0.198 Sum_probs=134.8
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCee-C------CCCCHHHHhcceEEEccCC--CCCcccHHHHHh-c
Q 005314 488 KMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVE-I------QKLQLKWLRQQMGLVSQEP--VLFNDTVRVNIA-Y 557 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~d-i------~~~~~~~lR~~i~~V~Qe~--~LF~gTIreNI~-~ 557 (703)
..++|+||||||||||+..|.++..+..|+++.++.+ + ...+.....-.+.+..|++ .++..+++++-. |
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765421 1 1111123333455555553 345555554421 1
Q ss_pred C-CCCCCCHHHHHHHHHHhcHHHHHHH--hhccccchhcCC---------CCCCChhHHHHHHHHHHhcc----CCCEEE
Q 005314 558 G-KEGNATEAEVLAAAELANAHQFISS--LKQGYDTIVGER---------GIQLSGGQKQRVAIARAMVK----APKILL 621 (703)
Q Consensus 558 g-~~~~~t~~ei~~A~~~a~l~~~I~~--Lp~G~dT~vGe~---------G~~LSGGQkQRiaIARAllk----~p~ILl 621 (703)
. .....+.+++.+.++..+++.+... +|+|-=+.+.+. ..+||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1 1224678888888888887532111 344444444332 26899999999999999975 489999
Q ss_pred eeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEEeC
Q 005314 622 LDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRDADLIAVVKN 671 (703)
Q Consensus 622 LDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~aD~I~vl~~ 671 (703)
|||||++||..+...+.+.|.++.+ +.|+|+|||+.+.++.||+|++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998765 7899999999999999999999963
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=2.2e-22 Score=216.05 Aligned_cols=214 Identities=23% Similarity=0.430 Sum_probs=174.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeC-CCCCHHHHh-c
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEI-QKLQLKWLR-Q 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di-~~~~~~~lR-~ 535 (703)
-++++|++..-. + ....++++||++++||+++|.|-+|-|-+.|+.+|+|+..|.+|+|+++|+|+ ..++...+| .
T Consensus 257 vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 588999998643 2 35689999999999999999999999999999999999999999999999997 667777655 6
Q ss_pred ceEEEccCCC----CCcccHHHHHhcCCCCC--------CCHHHHHHHHHHhcHHHHHHHhhccccchh---cCCCCCCC
Q 005314 536 QMGLVSQEPV----LFNDTVRVNIAYGKEGN--------ATEAEVLAAAELANAHQFISSLKQGYDTIV---GERGIQLS 600 (703)
Q Consensus 536 ~i~~V~Qe~~----LF~gTIreNI~~g~~~~--------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~v---Ge~G~~LS 600 (703)
-+||||.|.+ ...-|+.||+.++.-.. .+..++.+.+ ..+=+-||-.- ...-..||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a---------~~li~~fdVr~~~~~~~a~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA---------RELIEEFDVRAPSPDAPARSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH---------HHHHHHcCccCCCCCcchhhcC
Confidence 8999999884 56779999998883211 2223443333 22222344331 22346899
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCEEEEec
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~G 678 (703)
||+.||+-+||-|.++|++||..+||-+||..+...|.+.|.+.. +|+.+++|+-.|..+ .-||||+||.+|+|+...
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 999999999999999999999999999999999999999987654 688999999999987 569999999999999776
Q ss_pred ChhH
Q 005314 679 KHET 682 (703)
Q Consensus 679 th~e 682 (703)
+.++
T Consensus 486 ~~~~ 489 (501)
T COG3845 486 PPEE 489 (501)
T ss_pred cccc
Confidence 6554
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-22 Score=217.99 Aligned_cols=195 Identities=26% Similarity=0.351 Sum_probs=161.6
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
..+++.+|+|.|+.. +.+.+.++++.++.-.++++||++|+||||+++++.+-..|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 469999999999754 22899999999999999999999999999999999999999999998876 678
Q ss_pred eEEEccCCCC-CcccHHHHHhcC-CCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCC-CCCChhHHHHHHHHHHh
Q 005314 537 MGLVSQEPVL-FNDTVRVNIAYG-KEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERG-IQLSGGQKQRVAIARAM 613 (703)
Q Consensus 537 i~~V~Qe~~L-F~gTIreNI~~g-~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G-~~LSGGQkQRiaIARAl 613 (703)
|+|-.|...= |+-.+-+==.+- ..+..+++|+++.|...|+. -++.-.. ..||||||-|+|+|-+.
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~-----------g~la~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLS-----------GELALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCC-----------chhhhccccccCCcchhHHHHHHHh
Confidence 8888886542 332222211111 12345899999998777654 4444344 56999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEEE
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAE 676 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive 676 (703)
+.+|.+|+|||||..||.+|-..+-++|.+. +--||+|||+.+.++. |+.+++.+||+|.-
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999876 5579999999999976 99999999999975
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=3.4e-22 Score=215.33 Aligned_cols=225 Identities=23% Similarity=0.345 Sum_probs=147.4
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC--CeeCCCCCHHHH
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD--GVEIQKLQLKWL 533 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id--G~di~~~~~~~l 533 (703)
...|.++|+++.|++ ..+++|..|++++|++++|+|++||||||+++.|.|-..|..=++-+= ..++..=....+
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av 149 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAV 149 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHH
Confidence 457999999999984 468999999999999999999999999999999999988876554321 111100000011
Q ss_pred hcceEEEccCCCCCcccHHHHHhcCCCCCCCH---HHHHHHHHHhcHHHHHHH----h-hccccchh-cCCCCCCChhHH
Q 005314 534 RQQMGLVSQEPVLFNDTVRVNIAYGKEGNATE---AEVLAAAELANAHQFISS----L-KQGYDTIV-GERGIQLSGGQK 604 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~---~ei~~A~~~a~l~~~I~~----L-p~G~dT~v-Ge~G~~LSGGQk 604 (703)
+.-+-.+.++-.-.. -..|++.-. .++... +++++-+...+.+.|=.. | ..|+.... -..-..||||||
T Consensus 150 ~~v~~~~~~e~~rle-~~~E~l~~~-~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 150 QAVVMETDHERKRLE-YLAEDLAQA-CDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHHhhhhHHHHHHHH-HHHHHHHhh-ccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence 100000000000000 011222111 011111 111111111111111110 0 11333322 234568999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCE-EEEecChhH
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGV-IAEKGKHET 682 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~-Ive~Gth~e 682 (703)
-|+||||||+.+|++|||||||.+||.++-.-+.+.|.+..+. |+|+++|.-.++.. |-.|+-|++++ +.-.|++++
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 9999999999999999999999999999999999999877332 89999999999976 99999999999 678999998
Q ss_pred Hhcc
Q 005314 683 LVHV 686 (703)
Q Consensus 683 Ll~~ 686 (703)
.+..
T Consensus 307 y~~t 310 (614)
T KOG0927|consen 307 YVKT 310 (614)
T ss_pred HhhH
Confidence 8753
No 392
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.2e-22 Score=210.27 Aligned_cols=197 Identities=30% Similarity=0.427 Sum_probs=148.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-+-+.||+|.||+. .|.+++++|-|.--.+||||||+|-|||||++||.|-++|+.|+.+=+ .|-+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence 46789999999964 689999999999999999999999999999999999999999987643 35578
Q ss_pred EEEccCCC--C-CcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 538 GLVSQEPV--L-FNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 538 ~~V~Qe~~--L-F~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
|+-.|... | -..|-.|-+.-+ -+.+-++.+.++-.-|+.. --.|. +-..||||||-|+|+|---+
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL~s-------HAHTi---kikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRK--FNLPYQEARKQLGTFGLAS-------HAHTI---KIKDLSGGQKARVALAELAL 720 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHh--cCCChHHHHHHhhhhhhhh-------ccceE---eeeecCCcchHHHHHHHHhc
Confidence 88877642 1 122444444332 1234444444444333311 11121 34679999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcC-EEEEEeCCEEEE-ecChh
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDAD-LIAVVKNGVIAE-KGKHE 681 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD-~I~vl~~G~Ive-~Gth~ 681 (703)
+.|+||||||||.+||.+|-..+-++|.+. +..||+|+|+-..|...| ..+|+++-.|-| .|.++
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFe 787 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFE 787 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHH
Confidence 999999999999999999999999999887 568999999998887655 355666544443 34444
No 393
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.3e-22 Score=202.26 Aligned_cols=168 Identities=19% Similarity=0.216 Sum_probs=119.1
Q ss_pred ccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE--CCe---eCCCCCHHHHhcceEEEccCCCCCcccH
Q 005314 477 FRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL--DGV---EIQKLQLKWLRQQMGLVSQEPVLFNDTV 551 (703)
Q Consensus 477 L~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i--dG~---di~~~~~~~lR~~i~~V~Qe~~LF~gTI 551 (703)
++++++++.+| ..+|+||||||||||+..|.-.+. |.... .|. ++.... .-...|.+++|..-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCC--CCeEEEEEEEEcCCccC---
Confidence 46677777776 779999999999999988863322 22211 122 111111 12456888888876665
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh----ccCCCEEEeeccCc
Q 005314 552 RVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM----VKAPKILLLDEATS 627 (703)
Q Consensus 552 reNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl----lk~p~ILlLDEaTS 627 (703)
| . .+..+ .+.+.+++.. . ........+||||||||++||||+ +.+|+++||||||+
T Consensus 83 --~-----~--~~~~~------~~~~~~~l~~-~----~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 83 --N-----P--LCVLS------QDMARSFLTS-N----KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred --C-----c--CCHHH------HHHHHHHhcc-c----cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 2 1 11111 1223344433 2 223345668999999999999999 69999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcC----CceEEEEccCchHHhhcCEEEEEeCCE
Q 005314 628 ALDAESERVIQDALERVMV----GRTTVVIAHRLSTIRDADLIAVVKNGV 673 (703)
Q Consensus 628 aLD~~se~~v~~~l~~~~~----~rT~IvIaHrlsti~~aD~I~vl~~G~ 673 (703)
+||..+...+.+.|.+..+ ++|+|+++|++..+..+|+|-||..|+
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999999999999987643 358888999999999999999998653
No 394
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.87 E-value=3.1e-22 Score=205.25 Aligned_cols=199 Identities=19% Similarity=0.259 Sum_probs=144.3
Q ss_pred eEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEE--ECCeeCCCCCHHHHhcce--EEEccCCCCCcccHHHHHh
Q 005314 481 CLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHIT--LDGVEIQKLQLKWLRQQM--GLVSQEPVLFNDTVRVNIA 556 (703)
Q Consensus 481 sl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~--idG~di~~~~~~~lR~~i--~~V~Qe~~LF~gTIreNI~ 556 (703)
=+.|.+||+++|+|++|+|||||++.+.+.++...+++. +-...-+..+..++.+.+ .+|-.+. +.+-...+.
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~ 86 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQ 86 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHH
Confidence 357899999999999999999999999999887644333 332222335666666555 1111100 001111111
Q ss_pred cCCCCCCCHHHHHHHHH---Hhc-----HHHHHHHhhccccchhcCCCCCCChhH--------HHHHHHHHHhccCCCEE
Q 005314 557 YGKEGNATEAEVLAAAE---LAN-----AHQFISSLKQGYDTIVGERGIQLSGGQ--------KQRVAIARAMVKAPKIL 620 (703)
Q Consensus 557 ~g~~~~~t~~ei~~A~~---~a~-----l~~~I~~Lp~G~dT~vGe~G~~LSGGQ--------kQRiaIARAllk~p~IL 620 (703)
.. ..+.+.++ ..| +-|-+.++|++|++.+|+.|..+|||| +||+++||+++++++|.
T Consensus 87 ~~-------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 87 VA-------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred HH-------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 00 01111111 111 234578999999999999999999999 99999999999999999
Q ss_pred EeeccCcCCCHHHHHH-HHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhh
Q 005314 621 LLDEATSALDAESERV-IQDALERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQ 698 (703)
Q Consensus 621 lLDEaTSaLD~~se~~-v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q 698 (703)
+| ||+++|+.+|.. ++ +++.. .++|.|+++||+++..++|.|.||++|++ |++|+.. ++.|+.+++.+
T Consensus 160 ~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~-~~~~~~~~~~r 229 (249)
T cd01128 160 II--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD-PEELQRMWLLR 229 (249)
T ss_pred Ee--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC-HHHHHHHHHHH
Confidence 99 999999877764 54 45544 57999999999999999999999999997 8899975 77898887655
Q ss_pred h
Q 005314 699 T 699 (703)
Q Consensus 699 ~ 699 (703)
.
T Consensus 230 ~ 230 (249)
T cd01128 230 R 230 (249)
T ss_pred H
Confidence 3
No 395
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.86 E-value=1.9e-21 Score=190.59 Aligned_cols=85 Identities=27% Similarity=0.328 Sum_probs=78.8
Q ss_pred HHHhhccccchhcCCCCCCChhHHHHHHHHHHhc----cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEcc
Q 005314 581 ISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV----KAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAH 655 (703)
Q Consensus 581 I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll----k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaH 655 (703)
+..+|+|-.|++ ||||||||++||||+. .+|+++||||||++||+...+.+.+.|.++.+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 567899999998 9999999999999984 79999999999999999999999999988754 589999999
Q ss_pred CchHHhhcCEEEEEeC
Q 005314 656 RLSTIRDADLIAVVKN 671 (703)
Q Consensus 656 rlsti~~aD~I~vl~~ 671 (703)
+++.+..||+++++++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999975
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=5.2e-21 Score=202.09 Aligned_cols=182 Identities=24% Similarity=0.400 Sum_probs=138.0
Q ss_pred EEEEEcCCCCCcccccceeEEee-----CCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 463 HITFKYPARPDVQIFRDLCLAIP-----SGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 463 ~vsF~Y~~~~~~~vL~~isl~I~-----~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
+--+.||+- ...+.++.|++. .||.++++||+|-||||++++|+|...|++|. ..++ +|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eE
Confidence 334456532 334667777764 56789999999999999999999999999997 2222 68
Q ss_pred EEEccCCC-CCcccHHHHHhcCCCCCCCHHHH-HHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 538 GLVSQEPV-LFNDTVRVNIAYGKEGNATEAEV-LAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 538 ~~V~Qe~~-LF~gTIreNI~~g~~~~~t~~ei-~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
+|-||--. -|+||+++=+.-..+...+..-+ .+.++--++++.+ ...-..||||+-||+|||-||.|
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~-----------e~~v~~LSGGELQRvaIaa~L~r 472 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLL-----------ERPVDELSGGELQRVAIAAALSR 472 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHH-----------hcccccCCchhHHHHHHHHHhcc
Confidence 99999432 39999998875442211222221 2233333444433 23456799999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeC
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKN 671 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~ 671 (703)
+++++|||||++.||.+-.-.+-++|++.+ .++|.++|-|++..+.. +||++|++.
T Consensus 473 eADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 473 EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred ccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999999999999999999998865 47899999999999876 999999974
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.2e-22 Score=211.27 Aligned_cols=200 Identities=26% Similarity=0.362 Sum_probs=144.2
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCee--CCCCCHHHH
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVE--IQKLQLKWL 533 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~d--i~~~~~~~l 533 (703)
..+|..+|.+.+|.+ +.+|++-++++..|.+.++||++|+|||||++.|.. |+|.+-.++ ++......
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~- 147 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEA- 147 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHH-
Confidence 458999999999984 469999999999999999999999999999999988 544432221 11111111
Q ss_pred hcceEEEccCCCCCcccHHHHHhcCCC---CCCCHHHHHH-HHHHhcHHHHHHHhhccccchhcCC-CCCCChhHHHHHH
Q 005314 534 RQQMGLVSQEPVLFNDTVRVNIAYGKE---GNATEAEVLA-AAELANAHQFISSLKQGYDTIVGER-GIQLSGGQKQRVA 608 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~gTIreNI~~g~~---~~~t~~ei~~-A~~~a~l~~~I~~Lp~G~dT~vGe~-G~~LSGGQkQRia 608 (703)
-| ..+=.+|-|.-+..-.+ ...+.+||.. +++-. |+....-.+ -..||||=|=|+|
T Consensus 148 -------~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl-----------GFt~emq~~pt~slSGGWrMrla 208 (582)
T KOG0062|consen 148 -------LQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL-----------GFTPEMQLQPTKSLSGGWRMRLA 208 (582)
T ss_pred -------Hh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC-----------CCCHHHHhccccccCcchhhHHH
Confidence 11 12233344443332210 0012233333 33332 444443333 3479999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEE-EecChhHHhcc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIA-EKGKHETLVHV 686 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Iv-e~Gth~eLl~~ 686 (703)
||||++++||||||||||..||..+-.-+.+.|..+ ..|+|+|+|+-+.+.. |--|+-+++=|+- .+|++++..+.
T Consensus 209 LARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 209 LARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 999999999999999999999999999999999876 4899999999999976 8888888887663 68888888764
No 398
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=1e-20 Score=181.40 Aligned_cols=213 Identities=24% Similarity=0.336 Sum_probs=171.2
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC----CCCCeEEECCeeCCCCCHHHHhcc----eEEEccCC
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD----PDTGHITLDGVEIQKLQLKWLRQQ----MGLVSQEP 544 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~----p~~G~I~idG~di~~~~~~~lR~~----i~~V~Qe~ 544 (703)
-..+.+++|++.+.||+-++||+||||||-+.|.|+|... .+.-+.++|+.|+-+++++.-|+- |+.++|||
T Consensus 19 ~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP 98 (330)
T COG4170 19 WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCc
Confidence 3568999999999999999999999999999999999874 456778899999999999988864 56899999
Q ss_pred CCCcc---c----HHHHHhcCCCC-------CCCHHHHHHHHHHhcHHH--HHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 545 VLFND---T----VRVNIAYGKEG-------NATEAEVLAAAELANAHQ--FISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 545 ~LF~g---T----IreNI~~g~~~-------~~t~~ei~~A~~~a~l~~--~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
.-.-+ + +-+||-...-. .--..+.++.+..+|+.| .|++ .....|--|+-|++.
T Consensus 99 ~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~----------SYP~ElTeGE~QKVM 168 (330)
T COG4170 99 QSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR----------SYPYELTEGECQKVM 168 (330)
T ss_pred hhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH----------hCcchhccCcceeee
Confidence 64322 2 34566322000 112345567777787644 3433 234556678889999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
||-|+..+|++||-||||.++|+.|..+|.+.|.++-+ +.|+++|+|++.++.. ||+|-||-=|.-+|.+.-++|++
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhc
Confidence 99999999999999999999999999999999987654 6788889999999966 99999999999999999999999
Q ss_pred cCCcHHHHHH
Q 005314 686 VKDGIYASLV 695 (703)
Q Consensus 686 ~~~g~Y~~l~ 695 (703)
.+.-.|.+-.
T Consensus 249 ~PhHPYTqAL 258 (330)
T COG4170 249 MPHHPYTQAL 258 (330)
T ss_pred CCCCchHHHH
Confidence 8777887643
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=7.7e-21 Score=191.65 Aligned_cols=180 Identities=17% Similarity=0.205 Sum_probs=116.8
Q ss_pred cceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCC---CCccc----
Q 005314 478 RDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPV---LFNDT---- 550 (703)
Q Consensus 478 ~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~---LF~gT---- 550 (703)
+++.+...+| ..+|+|+||||||||+..|.-..-.... ... +.-...++.+. | .++.. -|+..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~---~~~---r~~~~~~~i~~-g--~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPK---LLG---RAKKVGEFVKR-G--CDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcc---ccc---cccCHHHHhhC-C--CCcEEEEEEEEeCCCcc
Confidence 4455555444 6689999999999999876443311110 000 01111111110 0 11111 01111
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH----hccCCCEEEeeccC
Q 005314 551 VRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA----MVKAPKILLLDEAT 626 (703)
Q Consensus 551 IreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA----llk~p~ILlLDEaT 626 (703)
..+|+.+- .+++.+.++++.... |.+..+|.+.+.. ..+..+||||||||+++|++ ++.+|+++|+||||
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~ 158 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEIN 158 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccc
Confidence 23444432 356778888888666 6667788776543 45678999999999887755 46899999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcC--C-ceEEEEccCchHH-hhcC--EEEEEeCCE
Q 005314 627 SALDAESERVIQDALERVMV--G-RTTVVIAHRLSTI-RDAD--LIAVVKNGV 673 (703)
Q Consensus 627 SaLD~~se~~v~~~l~~~~~--~-rT~IvIaHrlsti-~~aD--~I~vl~~G~ 673 (703)
++||+.+.+.+.+.|.+..+ + .|+|+|||++..+ ..|| +|++|++|+
T Consensus 159 ~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 159 QGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999988754 3 4799999998554 4566 677776664
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=9.1e-20 Score=191.52 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHHhcc----CCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCE
Q 005314 598 QLSGGQKQRVAIARAMVK----APKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGV 673 (703)
Q Consensus 598 ~LSGGQkQRiaIARAllk----~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~ 673 (703)
.|||||+||++|||+++. +|+++||||||++||+++...+.+.|.++.+++|+|+|||++.....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997653 9999999999999999999999999999888899999999999999999999999863
No 401
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.82 E-value=2.4e-19 Score=171.66 Aligned_cols=211 Identities=24% Similarity=0.322 Sum_probs=159.6
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC-CC-----
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK-LQ----- 529 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~-~~----- 529 (703)
...|++.++.|+|+.. .|++-|+|++++.|....+||.+|||||||+|+|.|-.-...|.|.+.|.+-=. -+
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 3579999999999964 389999999999999999999999999999999999998889999999976422 11
Q ss_pred -----HHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 530 -----LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 530 -----~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
-.+|++..+.-..-|.--+-+ .|-+.+|-. ..+.++=.+. |. =+|-.+-=+-..+|-|||
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~s-ae~mifgV~-g~dp~Rre~L---------I~----iLDIdl~WRmHkvSDGqr 153 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDIS-AEHMIFGVG-GDDPERREKL---------ID----ILDIDLRWRMHKVSDGQR 153 (291)
T ss_pred ceeEeccccccccccccccccccccc-HHHHHhhcc-CCChhHhhhh---------hh----heeccceEEEeeccccch
Confidence 234555555544222211223 233344421 1122211111 11 234445556789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHH--cCCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChh
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERV--MVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~--~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~ 681 (703)
.|+-|+..|++.=++|+|||-|--||.-....+.+-+++. -++.|+|..||=..-+.. +..++.|++|+++..-.++
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 9999999999999999999999999999999999999764 358899999999998866 8999999999999854444
Q ss_pred HH
Q 005314 682 TL 683 (703)
Q Consensus 682 eL 683 (703)
+.
T Consensus 234 ~i 235 (291)
T KOG2355|consen 234 KI 235 (291)
T ss_pred hh
Confidence 33
No 402
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.82 E-value=4.3e-20 Score=184.78 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=110.8
Q ss_pred ccceeEEeeCCC-EEEEEcCCCCChHHHHHhHc--------CCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCC
Q 005314 477 FRDLCLAIPSGK-MVALVGESGSGKSTVISLLQ--------RFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 547 (703)
Q Consensus 477 L~~isl~I~~G~-~vaiVG~SGsGKSTL~~lL~--------g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF 547 (703)
+-++||++++|+ .++|+||||||||||++.|. |++-|....+ .++|+.|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 568999999996 69999999999999999988 6666643221 2344444421
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCc
Q 005314 548 NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATS 627 (703)
Q Consensus 548 ~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTS 627 (703)
.++ . +..+.++-..+|+|+|||..|++++ .+|+++||||||+
T Consensus 78 --------~lg-~----------------------------~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~ 119 (200)
T cd03280 78 --------DIG-D----------------------------EQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGS 119 (200)
T ss_pred --------ecC-c----------------------------hhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCC
Confidence 111 0 0111233358999999999999995 8999999999999
Q ss_pred CCCHHHHHHHHH-HHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCEEEEec
Q 005314 628 ALDAESERVIQD-ALERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 628 aLD~~se~~v~~-~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~G 678 (703)
+||++....+.. .++.+. .++|+|++||.....+.||++.+|++|+++..+
T Consensus 120 glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 120 GTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 999999888854 455544 378999999997777889999999999998653
No 403
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=1e-19 Score=214.15 Aligned_cols=208 Identities=28% Similarity=0.408 Sum_probs=172.7
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC---CCeEEECCeeCCCCCHHHHhcceEEEccCCCCCc-
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD---TGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN- 548 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~---~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~- 548 (703)
..++|+|++.-++||+.+-+.||.|||||||++.|.|-.+-. .|+|.+||.+.+++.. ++.++|.+|....|.
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccce
Confidence 357999999999999999999999999999999999987543 5699999999999887 899999999887765
Q ss_pred ccHHHHHhcCCC---C-----CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCC-CCCChhHHHHHHHHHHhccCCCE
Q 005314 549 DTVRVNIAYGKE---G-----NATEAEVLAAAELANAHQFISSLKQGYDTIVGERG-IQLSGGQKQRVAIARAMVKAPKI 619 (703)
Q Consensus 549 gTIreNI~~g~~---~-----~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G-~~LSGGQkQRiaIARAllk~p~I 619 (703)
.|+||-|-|... + +.++.|-.++ ...----|-.|....||.||... ...|||||-|+++|-+++.+|++
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~--~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~ 281 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAA--MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASI 281 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHH--HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcce
Confidence 599999977631 1 2333332221 11111123477889999999754 47999999999999999999999
Q ss_pred EEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCch--HHhhcCEEEEEeCCEEEEecChhHHhc
Q 005314 620 LLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLS--TIRDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 620 LlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrls--ti~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
+.+||+|-+||+.|.-++.++|+++.+ +.|.++.=|+.+ +....|.|++|.+|+++-+|+.++.+.
T Consensus 282 ~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 282 LFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999999988654 677777778776 678899999999999999999999764
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.79 E-value=5.3e-19 Score=184.80 Aligned_cols=202 Identities=25% Similarity=0.420 Sum_probs=152.7
Q ss_pred cCCCCcEEEEEEEEEcCCC-----------------------CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcC
Q 005314 453 ENVKGDIEFQHITFKYPAR-----------------------PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 453 ~~~~~~I~~~~vsF~Y~~~-----------------------~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
+.+.+.+.|++++-.|.+. -...+|+|+||+|+||+.++|||+|||||||++++|+|
T Consensus 352 e~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G 431 (593)
T COG2401 352 EKLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431 (593)
T ss_pred cccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHH
Confidence 3455678888887765321 02357999999999999999999999999999999998
Q ss_pred C--------CCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHH
Q 005314 510 F--------YDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFI 581 (703)
Q Consensus 510 ~--------y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I 581 (703)
+ |.|++|.|.+--..+..+-+.+ -||.+=.-||-|.+.-- ..| -..-.+.++.+|+.|-+
T Consensus 432 ~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge---------~Ep~f~~~tilehl~s~-tGD--~~~AveILnraGlsDAv 499 (593)
T COG2401 432 AQKGRGEEKYRPDSGKVEVPKNTVSALIPGE---------YEPEFGEVTILEHLRSK-TGD--LNAAVEILNRAGLSDAV 499 (593)
T ss_pred HhhcccccccCCCCCceeccccchhhccCcc---------cccccCchhHHHHHhhc-cCc--hhHHHHHHHhhccchhh
Confidence 6 6899999987432232222222 14554444888887432 222 22345667777776644
Q ss_pred HHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchH
Q 005314 582 SSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLST 659 (703)
Q Consensus 582 ~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlst 659 (703)
.- - .+-..||-|||-|..||+++...|.+++.||.-|.||..|...|...|.++. .+-|.++||||...
T Consensus 500 ly-----R----r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 500 LY-----R----RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred hh-----h----ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 31 1 2345799999999999999999999999999999999999999999999877 58899999999999
Q ss_pred Hhh--cCEEEEEeCCEEE
Q 005314 660 IRD--ADLIAVVKNGVIA 675 (703)
Q Consensus 660 i~~--aD~I~vl~~G~Iv 675 (703)
+.. =|+++.+.=|++.
T Consensus 571 ~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 571 GNALRPDTLILVGYGKVP 588 (593)
T ss_pred HhccCCceeEEeeccccc
Confidence 875 5999888766654
No 405
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.2e-18 Score=195.57 Aligned_cols=120 Identities=30% Similarity=0.513 Sum_probs=102.2
Q ss_pred hcHHHHHHHhhc---cccc---------hhcCCCCCCChhHHHHHHHHHHhccCC---CEEEeeccCcCCCHHHHHHHHH
Q 005314 575 ANAHQFISSLKQ---GYDT---------IVGERGIQLSGGQKQRVAIARAMVKAP---KILLLDEATSALDAESERVIQD 639 (703)
Q Consensus 575 a~l~~~I~~Lp~---G~dT---------~vGe~G~~LSGGQkQRiaIARAllk~p---~ILlLDEaTSaLD~~se~~v~~ 639 (703)
..+++|...-|. .++| .+|.....||||+.|||-||.-|.|+. -++||||||.+|-.+--+++++
T Consensus 787 eEA~~FF~~~p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~ 866 (935)
T COG0178 787 EEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE 866 (935)
T ss_pred HHHHHHHhcchHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH
Confidence 345666666553 3333 468889999999999999999999998 8999999999999999999999
Q ss_pred HHHHHc-CCceEEEEccCchHHhhcCEEEEE------eCCEEEEecChhHHhccCCcHHHHHH
Q 005314 640 ALERVM-VGRTTVVIAHRLSTIRDADLIAVV------KNGVIAEKGKHETLVHVKDGIYASLV 695 (703)
Q Consensus 640 ~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl------~~G~Ive~Gth~eLl~~~~g~Y~~l~ 695 (703)
.|.++. +|.|||+|-|.|..|+.||.|+=| +.|+||.+||.+|+.+. .+.|..-|
T Consensus 867 VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~-~~S~Tg~y 928 (935)
T COG0178 867 VLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKV-KASYTGKY 928 (935)
T ss_pred HHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhC-ccchhHHH
Confidence 998864 699999999999999999999999 56899999999999986 46665544
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.77 E-value=6.6e-18 Score=208.66 Aligned_cols=102 Identities=25% Similarity=0.409 Sum_probs=91.8
Q ss_pred cccchhcCCCCCCChhHHHHHHHHHHhccC---CCEEEeeccCcCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhh
Q 005314 587 GYDTIVGERGIQLSGGQKQRVAIARAMVKA---PKILLLDEATSALDAESERVIQDALERV-MVGRTTVVIAHRLSTIRD 662 (703)
Q Consensus 587 G~dT~vGe~G~~LSGGQkQRiaIARAllk~---p~ILlLDEaTSaLD~~se~~v~~~l~~~-~~~rT~IvIaHrlsti~~ 662 (703)
||= .+|..-..|||||.|||-||.-|.++ +.++||||||.+|+...-+.+.+.|+++ ..|.|+|+|.|++..++.
T Consensus 1689 gYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~ 1767 (1809)
T PRK00635 1689 GYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQ 1767 (1809)
T ss_pred Cee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 443 47899999999999999999999976 7899999999999999999999999886 468999999999999999
Q ss_pred cCEEEEE------eCCEEEEecChhHHhccCCc
Q 005314 663 ADLIAVV------KNGVIAEKGKHETLVHVKDG 689 (703)
Q Consensus 663 aD~I~vl------~~G~Ive~Gth~eLl~~~~g 689 (703)
||.|+-| +.|+||.+||.+++.+.+++
T Consensus 1768 aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S 1800 (1809)
T PRK00635 1768 ADYLIEMGPGSGKTGGKILFSGPPKDISASKDS 1800 (1809)
T ss_pred CCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCC
Confidence 9999999 45899999999999976433
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.76 E-value=3.8e-18 Score=164.91 Aligned_cols=73 Identities=29% Similarity=0.424 Sum_probs=67.5
Q ss_pred CChhHHHHHHHHHHhcc----CCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEEeC
Q 005314 599 LSGGQKQRVAIARAMVK----APKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRDADLIAVVKN 671 (703)
Q Consensus 599 LSGGQkQRiaIARAllk----~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~aD~I~vl~~ 671 (703)
||+||+||++|||+|.. +|+++|||||++++|++....+.+.+.+..+ ++|+|++||++.....+|+++.|+.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99999999999999986 7899999999999999999999999987643 5899999999999999999999964
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.75 E-value=2.8e-18 Score=181.56 Aligned_cols=172 Identities=24% Similarity=0.410 Sum_probs=126.0
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC-------------eeCCCCCHHHHh------cceEEEccC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG-------------VEIQKLQLKWLR------QQMGLVSQE 543 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG-------------~di~~~~~~~lR------~~i~~V~Qe 543 (703)
+.+||+.++|+|++|-||||.+++|.|-..|+=|+- ++ ..+.++=.+-+- .++-||.-=
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 357999999999999999999999999999987753 33 221111000000 122233334
Q ss_pred CCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEee
Q 005314 544 PVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLD 623 (703)
Q Consensus 544 ~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLD 623 (703)
|-.+.||++|=+.--+. .-..++.++.| +++-.+...-.+||||+-||+|||-|++|+++++++|
T Consensus 174 Pk~~KG~v~elLk~~de-------------~g~~devve~l--~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FD 238 (591)
T COG1245 174 PKVVKGKVGELLKKVDE-------------RGKFDEVVERL--GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFD 238 (591)
T ss_pred HHHhcchHHHHHHhhhh-------------cCcHHHHHHHh--cchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEc
Confidence 55566666665543211 11233444444 4555555667889999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeC
Q 005314 624 EATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRD-ADLIAVVKN 671 (703)
Q Consensus 624 EaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~-aD~I~vl~~ 671 (703)
||||-||....-.+-+.++++.+ ++++|+|-|+|..+.. +|.|.++-.
T Consensus 239 EpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 239 EPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred CCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999988888888988887 6999999999999976 999999864
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.72 E-value=7.1e-18 Score=171.11 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=113.3
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE-EEccCCCCCcccH
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG-LVSQEPVLFNDTV 551 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~-~V~Qe~~LF~gTI 551 (703)
...+.+|+++++++|+++.|+|||||||||+++.+.- -.+..++| +||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 3468999999999999999999999999999999881 24455677 7777653221 1
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh--ccCCCEEEeecc---C
Q 005314 552 RVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM--VKAPKILLLDEA---T 626 (703)
Q Consensus 552 reNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl--lk~p~ILlLDEa---T 626 (703)
.+.| ....++.+. ....+|.|++|+..+|+++ +.+|+++||||| |
T Consensus 73 ~~~i----------------l~~~~l~d~--------------~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 73 VDCI----------------LARVGASDS--------------QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred ccee----------------Eeeeccccc--------------hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 1111 111111111 1356999999999999999 999999999999 9
Q ss_pred cCCCHHHHHHHH-HHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEec
Q 005314 627 SALDAESERVIQ-DALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 627 SaLD~~se~~v~-~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~G 678 (703)
+.+|+.+..... +.+.+ ..++|+|++||.....+.||++..+++|++...+
T Consensus 123 ~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 123 STYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred ChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence 999998665432 55543 3478999999975556679999999999997655
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=5e-17 Score=170.20 Aligned_cols=191 Identities=20% Similarity=0.232 Sum_probs=122.2
Q ss_pred ccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-----------------------------------------CCC
Q 005314 477 FRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-----------------------------------------PDT 515 (703)
Q Consensus 477 L~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-----------------------------------------p~~ 515 (703)
+++.++.+.+| .++|+|||||||||++..|.=+.. ...
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 44566777776 688999999999999866432210 011
Q ss_pred CeEEECCeeCCC-CCHHHHhcceEEEccCCCCCcccHHHHHhcCCCC--CCCH------HHHHHHHHHhcHHHHHHHhhc
Q 005314 516 GHITLDGVEIQK-LQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG--NATE------AEVLAAAELANAHQFISSLKQ 586 (703)
Q Consensus 516 G~I~idG~di~~-~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~--~~t~------~ei~~A~~~a~l~~~I~~Lp~ 586 (703)
.++.+||..++. -+...+-..|.+.+++..|+.++-.+-..|-+.- .... ++..++.+.-+. +..-|+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~---~~~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNA---LLKGPH 167 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH---HhCCCC
Confidence 245677877765 2233445567777777788855443333332110 1111 122222222111 111355
Q ss_pred cccchhcCCC----CCCChhHHHHHHHHHHhc---------cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEE
Q 005314 587 GYDTIVGERG----IQLSGGQKQRVAIARAMV---------KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVI 653 (703)
Q Consensus 587 G~dT~vGe~G----~~LSGGQkQRiaIARAll---------k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvI 653 (703)
..+..+.-++ ..+|+||+|+++|||+|. ++|+++||||||++||+.....+.+.+.+. + .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~--~-q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR--V-QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC--C-CEEEE
Confidence 5555443333 348999999999999974 899999999999999999999999999765 2 45555
Q ss_pred ccCchHHhh-c---CEEEEEeCCEE
Q 005314 654 AHRLSTIRD-A---DLIAVVKNGVI 674 (703)
Q Consensus 654 aHrlsti~~-a---D~I~vl~~G~I 674 (703)
+|....+.. | ++|+.+++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 555554433 4 78999999986
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=6.6e-17 Score=191.99 Aligned_cols=99 Identities=27% Similarity=0.483 Sum_probs=89.8
Q ss_pred cccch-hcCCCCCCChhHHHHHHHHHHhccCC--CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh
Q 005314 587 GYDTI-VGERGIQLSGGQKQRVAIARAMVKAP--KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD 662 (703)
Q Consensus 587 G~dT~-vGe~G~~LSGGQkQRiaIARAllk~p--~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~ 662 (703)
|++.. .+....+|||||+|||+|||||..+| ++|||||||++||+++...+.+.|.++. +|.|+|+|+|++..++.
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 44432 56778899999999999999999986 8999999999999999999999998875 48899999999999999
Q ss_pred cCEEEEE------eCCEEEEecChhHHhc
Q 005314 663 ADLIAVV------KNGVIAEKGKHETLVH 685 (703)
Q Consensus 663 aD~I~vl------~~G~Ive~Gth~eLl~ 685 (703)
||+|++| ++|+|++.|+.+++..
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 9999999 8999999999999864
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.70 E-value=7.1e-17 Score=192.11 Aligned_cols=104 Identities=27% Similarity=0.489 Sum_probs=92.4
Q ss_pred HHHHhhccccch-hcCCCCCCChhHHHHHHHHHHhccCC--CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEcc
Q 005314 580 FISSLKQGYDTI-VGERGIQLSGGQKQRVAIARAMVKAP--KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAH 655 (703)
Q Consensus 580 ~I~~Lp~G~dT~-vGe~G~~LSGGQkQRiaIARAllk~p--~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaH 655 (703)
++..+ |++.. ....-..|||||||||+|||||..+| ++|||||||++||++....+.+.|.++. +|.|+|+|+|
T Consensus 472 ~L~~v--GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH 549 (943)
T PRK00349 472 FLVDV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEH 549 (943)
T ss_pred Hhhcc--ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 34444 55433 46677899999999999999999997 9999999999999999999999999875 4899999999
Q ss_pred CchHHhhcCEEEEE------eCCEEEEecChhHHhc
Q 005314 656 RLSTIRDADLIAVV------KNGVIAEKGKHETLVH 685 (703)
Q Consensus 656 rlsti~~aD~I~vl------~~G~Ive~Gth~eLl~ 685 (703)
++..+..||+|++| ++|+|+..|+.+++++
T Consensus 550 ~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 550 DEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 99999999999999 9999999999999875
No 413
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.70 E-value=1.2e-17 Score=147.77 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=72.5
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRV 553 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIre 553 (703)
..+|++++|++++|+.++|+||||||||||++++. +|+|.++|.|+..++.++.++.++++||+ +|.+||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999986 89999999999999999999999999999 99999999
Q ss_pred HHhc
Q 005314 554 NIAY 557 (703)
Q Consensus 554 NI~~ 557 (703)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
No 414
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=1.2e-16 Score=200.11 Aligned_cols=134 Identities=24% Similarity=0.288 Sum_probs=112.6
Q ss_pred CCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH------HHHHHHHhccCCCE
Q 005314 546 LFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ------RVAIARAMVKAPKI 619 (703)
Q Consensus 546 LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ------RiaIARAllk~p~I 619 (703)
.|+||++|||.+ + ++++++ +.|++.+++++|+..+|.| ||.++.+| .||||||| |+|||||++.+|+|
T Consensus 1153 ~~~~~~~~~i~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~i 1226 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-R-SDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGI 1226 (1311)
T ss_pred HcCccHHHHhhc-C-CCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCE
Confidence 489999999999 3 467766 7999999999999999999 99999886 89999999 99999999999999
Q ss_pred EEeeccCcCCCHHHHHHHHHHHHHHc------CCceEEEEccCchHHh------hcCEEEEEeC---C-EEEEecChhHH
Q 005314 620 LLLDEATSALDAESERVIQDALERVM------VGRTTVVIAHRLSTIR------DADLIAVVKN---G-VIAEKGKHETL 683 (703)
Q Consensus 620 LlLDEaTSaLD~~se~~v~~~l~~~~------~~rT~IvIaHrlsti~------~aD~I~vl~~---G-~Ive~Gth~eL 683 (703)
|+|||||++||+.+...+.+.|..+. .+.|+|+|||++..+. .||..|.+.. | .+++.-+++.+
T Consensus 1227 l~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1306 (1311)
T TIGR00606 1227 IALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSPSSL 1306 (1311)
T ss_pred EEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCCccc
Confidence 99999999999999999999887753 3679999999999876 4677776643 2 23444455554
Q ss_pred hc
Q 005314 684 VH 685 (703)
Q Consensus 684 l~ 685 (703)
|.
T Consensus 1307 ~~ 1308 (1311)
T TIGR00606 1307 GK 1308 (1311)
T ss_pred cc
Confidence 43
No 415
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.67 E-value=5.3e-17 Score=162.03 Aligned_cols=138 Identities=16% Similarity=0.175 Sum_probs=96.3
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCC-cccHH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTVR 552 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF-~gTIr 552 (703)
..|++|++|.. |+.++|+||||||||||++.|.+..- +..+|.++... .+++|...+| ..|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 46788887765 79999999999999999999976432 23467666431 2566755555 55999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHH
Q 005314 553 VNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAE 632 (703)
Q Consensus 553 eNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~ 632 (703)
||+.++.. ...+++.+ +.+.++.+. +++|+++||||||+++|+.
T Consensus 78 d~l~~~~s--~~~~e~~~------~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~ 121 (199)
T cd03283 78 DDLRDGIS--YFYAELRR------LKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred hccccccC--hHHHHHHH------HHHHHHhcc----------------------------CCCCeEEEEecccCCCCHH
Confidence 99988832 22223222 233333331 0799999999999999999
Q ss_pred HHHHHHH-HHHHHc-CCceEEEEccCchHHhhc
Q 005314 633 SERVIQD-ALERVM-VGRTTVVIAHRLSTIRDA 663 (703)
Q Consensus 633 se~~v~~-~l~~~~-~~rT~IvIaHrlsti~~a 663 (703)
+...+.. .+..+. ++.|+|++||++..+...
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 8776654 344443 478999999999887654
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.67 E-value=1.4e-16 Score=159.72 Aligned_cols=155 Identities=17% Similarity=0.143 Sum_probs=104.7
Q ss_pred cceeEEeeCCCEEEEEcCCCCChHHHHHhHcC-CCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHh
Q 005314 478 RDLCLAIPSGKMVALVGESGSGKSTVISLLQR-FYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIA 556 (703)
Q Consensus 478 ~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g-~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~ 556 (703)
-..++++.+|++++|+|||||||||+++.|.+ .+.+..|...- ..+..+++..|....|. ..+++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~i- 85 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDSI- 85 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Ccccc-
Confidence 34556666899999999999999999999983 22222222110 01223444333322221 11111
Q ss_pred cCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHH
Q 005314 557 YGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERV 636 (703)
Q Consensus 557 ~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~ 636 (703)
-++-..++++++| +..+.+.+.+|+++||||||+++|+.....
T Consensus 86 ------------------------------------~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 86 ------------------------------------SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred ------------------------------------cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 1112344555555 777778889999999999999999987776
Q ss_pred HHHH-HHHHc-CCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHH
Q 005314 637 IQDA-LERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 637 v~~~-l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eL 683 (703)
+... ++.+. .+.|+|++||+...++.+|++..+++|++.+.++-+++
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 6554 34332 47899999999999999999999999999988865444
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.62 E-value=1.9e-15 Score=157.00 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC-HHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHH
Q 005314 488 KMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ-LKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEA 566 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~-~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ 566 (703)
+.++|+|++|||||||++.|.|++.|.+|+|.++|+++..++ ..++...++++||...--..++.+|- + ..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~----k~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P----KA 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h----HH
Confidence 689999999999999999999999999999999999998775 56788889999997533223443331 1 00
Q ss_pred HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC
Q 005314 567 EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV 646 (703)
Q Consensus 567 ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~ 646 (703)
+ ++ ..++|+. +|+++|+|||++ +..+...+..+..
T Consensus 184 ~--------~~-----------------------------~~~i~~~--~P~villDE~~~------~e~~~~l~~~~~~ 218 (270)
T TIGR02858 184 E--------GM-----------------------------MMLIRSM--SPDVIVVDEIGR------EEDVEALLEALHA 218 (270)
T ss_pred H--------HH-----------------------------HHHHHhC--CCCEEEEeCCCc------HHHHHHHHHHHhC
Confidence 0 11 5566664 999999999984 3334444444456
Q ss_pred CceEEEEccCchH--H------------hhcCEEEEEeCCEEEEecChhHHh
Q 005314 647 GRTTVVIAHRLST--I------------RDADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 647 ~rT~IvIaHrlst--i------------~~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
|.|+|+++|..+. + .-+||+++|++|+ ..|+.+++.
T Consensus 219 G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 219 GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 9999999997665 3 3489999999887 666665543
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.54 E-value=1.2e-14 Score=146.89 Aligned_cols=156 Identities=22% Similarity=0.173 Sum_probs=102.9
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRV 553 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIre 553 (703)
..|.+|++|++++ ++++|+|||||||||+++.+.+..-.. + .|..+ . ..+..++++.|-. ..-+++|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~v---p--~~~~~i~~~~~i~--~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFV---P--ASKAEIGVVDRIF--TRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCee---c--cccceecceeeEe--ccCCchh
Confidence 3588999999988 999999999999999999997543111 0 11111 1 1124567765521 2235566
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh--ccCCCEEEeecc---CcC
Q 005314 554 NIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM--VKAPKILLLDEA---TSA 628 (703)
Q Consensus 554 NI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl--lk~p~ILlLDEa---TSa 628 (703)
|+..| . |-=...+..|++++ ..+|+++||||| |++
T Consensus 85 ~ls~g-~---------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 85 DLAGG-R---------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred hhccC-c---------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 66555 1 11011122344443 469999999999 999
Q ss_pred CCHHH-HHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHH
Q 005314 629 LDAES-ERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 629 LD~~s-e~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eL 683 (703)
+|..+ ...+.+.+.+. .++|+|++||.......+|++..+++|++...++-+++
T Consensus 125 lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 125 YDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 99865 24455555332 37899999999887788998888888988766554444
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.53 E-value=2e-13 Score=148.58 Aligned_cols=76 Identities=26% Similarity=0.347 Sum_probs=66.3
Q ss_pred CCCChhHHHHHHHHHHhc---------cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh---cC
Q 005314 597 IQLSGGQKQRVAIARAMV---------KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD---AD 664 (703)
Q Consensus 597 ~~LSGGQkQRiaIARAll---------k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~---aD 664 (703)
..+|+||+|+++||+++. ++|+|||||||+|.||++..+.+.+.+.+. +.+++++||.+..+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 589999999999999884 899999999999999999999999988653 4688888998876544 46
Q ss_pred EEEEEeCCEE
Q 005314 665 LIAVVKNGVI 674 (703)
Q Consensus 665 ~I~vl~~G~I 674 (703)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 420
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=4.8e-14 Score=141.15 Aligned_cols=141 Identities=17% Similarity=0.133 Sum_probs=97.6
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEE-EccCCCCCcccH
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL-VSQEPVLFNDTV 551 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~-V~Qe~~LF~gTI 551 (703)
+..+.+|++|++++|+.++|+|||||||||+++.+.++. +..++|+ ||-+. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 457899999999999999999999999999999998763 3334442 22111 12245
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCH
Q 005314 552 RVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDA 631 (703)
Q Consensus 552 reNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~ 631 (703)
.|||... - +.+..+.++...+|+|++|+ ..+-++..+|+++|||||++++|+
T Consensus 72 ~d~I~~~-~--------------------------~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 72 FNRLLSR-L--------------------------SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred hhheeEe-c--------------------------CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 5555322 1 11112334556899999976 455557889999999999999999
Q ss_pred HHHHHHH-HHHHHHc-CCceEEEEccCchHHhhcC
Q 005314 632 ESERVIQ-DALERVM-VGRTTVVIAHRLSTIRDAD 664 (703)
Q Consensus 632 ~se~~v~-~~l~~~~-~~rT~IvIaHrlsti~~aD 664 (703)
.....+. +.++.+. .++|+|++||....+..++
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 7544443 3333332 3789999999999876543
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.52 E-value=3.4e-14 Score=144.23 Aligned_cols=73 Identities=32% Similarity=0.435 Sum_probs=60.5
Q ss_pred CCChhHHHHHHHHH----HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q 005314 598 QLSGGQKQRVAIAR----AMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVK 670 (703)
Q Consensus 598 ~LSGGQkQRiaIAR----Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~ 670 (703)
.||||||-+++||= .-++++|++||||+.++||....+.+.+.|.+..+++-+|++||+..+...||+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999983 33678999999999999999999999999999888889999999999999999999874
No 422
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.51 E-value=1.4e-14 Score=167.67 Aligned_cols=105 Identities=23% Similarity=0.380 Sum_probs=89.8
Q ss_pred HHHHHHHhcHHHHHHHhhccccchhcCCC------CCCChhHHHHHHHHHHhc----------cCCCEEEeeccC-cCCC
Q 005314 568 VLAAAELANAHQFISSLKQGYDTIVGERG------IQLSGGQKQRVAIARAMV----------KAPKILLLDEAT-SALD 630 (703)
Q Consensus 568 i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G------~~LSGGQkQRiaIARAll----------k~p~ILlLDEaT-SaLD 630 (703)
+.+.++..+. ++...+|+++++.+++.| .+||||||||++||||++ .+|++||||||| ++||
T Consensus 433 ~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld 511 (562)
T PHA02562 433 INHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALD 511 (562)
T ss_pred HHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccc
Confidence 4444444432 445568999999999988 689999999999999887 599999999998 7899
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC-CEE
Q 005314 631 AESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKN-GVI 674 (703)
Q Consensus 631 ~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~-G~I 674 (703)
+.+...+.+.|.++ +++|+|+|||+......||++++|++ |+.
T Consensus 512 ~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 512 AEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 99999999999988 78999999999999999999999986 543
No 423
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.49 E-value=1.9e-13 Score=144.11 Aligned_cols=196 Identities=27% Similarity=0.409 Sum_probs=138.8
Q ss_pred EEEcCCCCCcccccceeEEeeCCC-----EEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEE
Q 005314 465 TFKYPARPDVQIFRDLCLAIPSGK-----MVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539 (703)
Q Consensus 465 sF~Y~~~~~~~vL~~isl~I~~G~-----~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~ 539 (703)
.|+||+ .+..+.++.|.|+.|+ .+...|++|-||||++++++|..+|++|. ++..+ +++|
T Consensus 342 ~y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSy 406 (592)
T KOG0063|consen 342 RYSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSY 406 (592)
T ss_pred eeccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceec
Confidence 477885 4567899999999986 57899999999999999999999999863 33333 4777
Q ss_pred EccCCC-CCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 540 VSQEPV-LFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 540 V~Qe~~-LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
=||... =|.+|+|.=+. +.|+.|-.--..-..+.. |-..+-.++..-.+||||+.||+|||-+|=|.++
T Consensus 407 kpqkispK~~~tvR~ll~---------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAd 476 (592)
T KOG0063|consen 407 KPQKISPKREGTVRQLLH---------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPAD 476 (592)
T ss_pred cccccCccccchHHHHHH---------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCc
Confidence 777543 47888887652 122222111111111111 2233444555667899999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHH--HcCCceEEEEccCchHHh-hcCEEEEEeC--CEEEEecChhHHhc
Q 005314 619 ILLLDEATSALDAESERVIQDALER--VMVGRTTVVIAHRLSTIR-DADLIAVVKN--GVIAEKGKHETLVH 685 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~--~~~~rT~IvIaHrlsti~-~aD~I~vl~~--G~Ive~Gth~eLl~ 685 (703)
+++.|||.+-||.+.....-..+++ +..++|-.+|-|.+-... .|||++|.+. +...-.-..+.|++
T Consensus 477 vYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 477 VYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred eEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 9999999999999877666555554 345799999999987653 4999999985 22333334445543
No 424
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=5.6e-14 Score=147.78 Aligned_cols=211 Identities=23% Similarity=0.360 Sum_probs=139.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcC--CCCCCCCeEEECCeeCCCCCHH----
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQR--FYDPDTGHITLDGVEIQKLQLK---- 531 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g--~y~p~~G~I~idG~di~~~~~~---- 531 (703)
+|.++|.+.+-. .+..+-|.||+|-.|.+.++|||+|-|||||++-|.- |--|..=.|+++-+.+..-+..
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 477887777654 3457999999999999999999999999999988763 3344444555554433211100
Q ss_pred ---HHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHH---HHH-------hcHHHHHHHhhccccchhcCCCC-
Q 005314 532 ---WLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAA---AEL-------ANAHQFISSLKQGYDTIVGERGI- 597 (703)
Q Consensus 532 ---~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A---~~~-------a~l~~~I~~Lp~G~dT~vGe~G~- 597 (703)
.=.++..++-.+.- +.-.|--|+. .+ .+++.+. ++. +.+...+..| |++-.+-++..
T Consensus 341 vl~aD~kRl~lLeee~~-----L~~q~e~Gd~-ta-aErl~~v~~ELraiGA~sAEarARRILAGL--GFskEMQ~rPt~ 411 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAK-----LMSQIEEGDT-TA-AERLKEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTT 411 (807)
T ss_pred HHHhhHHHHHHHHHHHH-----HHHHHHcCch-HH-HHHHHHHHHHHHHhccccchhHHHHHHhhc--CCChhHhcCCcc
Confidence 00011111111100 1111111200 00 1112111 111 2233334444 78888877765
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEE-
Q 005314 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIA- 675 (703)
Q Consensus 598 ~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Iv- 675 (703)
.+|||=|-||+|||||+-.|-+|.|||||..||-..---+-..|..+ .+|.++|+|+-+.+.. |..|+.|++-++-
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence 79999999999999999999999999999999998776666777666 5899999999999976 9999999988774
Q ss_pred EecChhH
Q 005314 676 EKGKHET 682 (703)
Q Consensus 676 e~Gth~e 682 (703)
..|+|.-
T Consensus 490 YrGNY~~ 496 (807)
T KOG0066|consen 490 YRGNYTL 496 (807)
T ss_pred hcchHHH
Confidence 5677643
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.36 E-value=1.4e-11 Score=136.20 Aligned_cols=176 Identities=22% Similarity=0.322 Sum_probs=122.8
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC---CeeCCC-----CCHHHHhcceEEEccCCC
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD---GVEIQK-----LQLKWLRQQMGLVSQEPV 545 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id---G~di~~-----~~~~~lR~~i~~V~Qe~~ 545 (703)
..+++++ |++.+|++++|+|+||+|||||+++|.|+++|+.|.|.+. |.++.+ ++.+.+++.|.+|.+-.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~- 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD- 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC-
Confidence 4689999 9999999999999999999999999999999999999994 555553 45566888899986431
Q ss_pred CCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhc-CCCCCCChhHHHH-HHHHHHhccCCCEEEee
Q 005314 546 LFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVG-ERGIQLSGGQKQR-VAIARAMVKAPKILLLD 623 (703)
Q Consensus 546 LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG-e~G~~LSGGQkQR-iaIARAllk~p~ILlLD 623 (703)
+..-+++..+--..-+.|+... +|.|-.+= +.-+++ -|.|| |+++ +..||
T Consensus 224 ----------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~--A~A~rEisl~---~ge~P----- 275 (438)
T PRK07721 224 ----------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRV--AMAQREIGLA---VGEPP----- 275 (438)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHH--HHHHHHHHHh---cCCCC-----
Confidence 1112233333222333444442 36554432 111111 11111 1111 12333
Q ss_pred ccCcCCCHHHHHHHHHHHHHHc---CCc-----eEEEEccCchHHhhcCEEEEEeCCEEEEecChh
Q 005314 624 EATSALDAESERVIQDALERVM---VGR-----TTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 624 EaTSaLD~~se~~v~~~l~~~~---~~r-----T~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~ 681 (703)
.|+++|+..-..+.+.++++. +|. |+++.+|+++. .-||++.++.||+|+..|+-.
T Consensus 276 -~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 276 -TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHH
Confidence 489999999999999988765 465 99999999996 889999999999999877653
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=1.4e-12 Score=131.88 Aligned_cols=145 Identities=21% Similarity=0.280 Sum_probs=87.4
Q ss_pred EEEEEcCCCCChHHHH-HhHcCCCCC-----------------CCCeEEECCeeCCCCC-HHHHhcceEEEccC-CC--C
Q 005314 489 MVALVGESGSGKSTVI-SLLQRFYDP-----------------DTGHITLDGVEIQKLQ-LKWLRQQMGLVSQE-PV--L 546 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~-~lL~g~y~p-----------------~~G~I~idG~di~~~~-~~~lR~~i~~V~Qe-~~--L 546 (703)
+++|+|++|||||||+ +++.|.+++ +.|.|.+.+.|+.... ...+| .+++.+. .. .
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCEEEEE
Confidence 6999999999999999 689988765 5688888888875321 12222 1222222 11 2
Q ss_pred Cccc-----------------HHHHH---hcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh--hHH
Q 005314 547 FNDT-----------------VRVNI---AYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG--GQK 604 (703)
Q Consensus 547 F~gT-----------------IreNI---~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG--GQk 604 (703)
|+.| ..+|+ ..|.+.|..+.++. .+ ..++.....-.|-. -...+| -|+
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~---~~~~~~~~~~~~~e-----~Sa~~~~~v~~ 158 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--AR---QITFHRKKNLQYYD-----ISAKSNYNFEK 158 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HH---HHHHHHHcCCEEEE-----EeCCCCCCHHH
Confidence 3332 11232 12312121111110 00 11122221111111 112233 399
Q ss_pred HHHHHHHHhccCCCEEEeeccC-----cCCCHHHHHHHHHHHHHHc
Q 005314 605 QRVAIARAMVKAPKILLLDEAT-----SALDAESERVIQDALERVM 645 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaT-----SaLD~~se~~v~~~l~~~~ 645 (703)
|++.|||+++.+|++++||||| ++||+.+.+.+.+.+.++.
T Consensus 159 ~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 159 PFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999999999998764
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.34 E-value=2.3e-12 Score=148.41 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHhccC----CCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q 005314 597 IQLSGGQKQRVAIARAMVKA----PKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672 (703)
Q Consensus 597 ~~LSGGQkQRiaIARAllk~----p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G 672 (703)
..|||||+||++|||+++.. |++|||||||++||+.+...+.+.|.++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 47899999999999999875 69999999999999999999999999988899999999999999999999999986
Q ss_pred E
Q 005314 673 V 673 (703)
Q Consensus 673 ~ 673 (703)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 4
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.31 E-value=7.7e-12 Score=126.25 Aligned_cols=137 Identities=16% Similarity=0.199 Sum_probs=91.2
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC-CCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcc--cH
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF-YDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND--TV 551 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~-y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~g--TI 551 (703)
.|-+|+++.=..+.+++|+||+|+||||+++.+... +-+..|...... .-.+++..|...-+.. |+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 455566654222379999999999999999998732 115556554322 1257777776443221 11
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCH
Q 005314 552 RVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDA 631 (703)
Q Consensus 552 reNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~ 631 (703)
.+++ ..| --+-||+++|+++..+|+++|||||++++|+
T Consensus 86 ~~~~----------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 86 SSGQ----------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred hhcc----------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 1111 111 2345999999999999999999999999998
Q ss_pred HH-HHHHHHHHHHHcC----CceEEEEccCchHHhhcC
Q 005314 632 ES-ERVIQDALERVMV----GRTTVVIAHRLSTIRDAD 664 (703)
Q Consensus 632 ~s-e~~v~~~l~~~~~----~rT~IvIaHrlsti~~aD 664 (703)
.. .....+.++.+.+ +.++|++||.++.++...
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 75 4444555555532 248999999999887653
No 429
>PRK10869 recombination and repair protein; Provisional
Probab=99.31 E-value=4.7e-12 Score=144.79 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=72.1
Q ss_pred CCCChhHHHHHHHHHHhcc----CCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q 005314 597 IQLSGGQKQRVAIARAMVK----APKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672 (703)
Q Consensus 597 ~~LSGGQkQRiaIARAllk----~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G 672 (703)
..|||||+|||+|||+++. +|+++||||||++||..+...+.+.|.++.+++|+|+|||.+..+..||+.++++++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3699999999999999996 689999999999999999999999999988889999999999999999999999875
Q ss_pred E
Q 005314 673 V 673 (703)
Q Consensus 673 ~ 673 (703)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
No 430
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.27 E-value=6.1e-12 Score=124.30 Aligned_cols=76 Identities=22% Similarity=0.192 Sum_probs=54.9
Q ss_pred CCCCCCChhHHHHHHHHHHhcc--CCCEEEeeccCcCCCHHHHHHHHHH-HHHHc--CCceEEEEccCchHHhhcCEEEE
Q 005314 594 ERGIQLSGGQKQRVAIARAMVK--APKILLLDEATSALDAESERVIQDA-LERVM--VGRTTVVIAHRLSTIRDADLIAV 668 (703)
Q Consensus 594 e~G~~LSGGQkQRiaIARAllk--~p~ILlLDEaTSaLD~~se~~v~~~-l~~~~--~~rT~IvIaHrlsti~~aD~I~v 668 (703)
.+-..||+|++| +++++.. +|+++|+||||+++|+.....+... ++.+. .++|+|++||.....+.+|.---
T Consensus 57 ~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~ 133 (185)
T smart00534 57 QGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPG 133 (185)
T ss_pred ccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCcc
Confidence 445678888887 4555555 9999999999999999977666444 44443 37899999999987777775333
Q ss_pred EeCC
Q 005314 669 VKNG 672 (703)
Q Consensus 669 l~~G 672 (703)
++++
T Consensus 134 v~~~ 137 (185)
T smart00534 134 VRNL 137 (185)
T ss_pred ceEE
Confidence 3333
No 431
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.24 E-value=6.4e-11 Score=139.85 Aligned_cols=150 Identities=15% Similarity=0.172 Sum_probs=99.1
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCC-CEEEEEcCCCCChHHHHHhHcCC-CCCCCCeEEECCeeCCCCCHHHHh
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSG-KMVALVGESGSGKSTVISLLQRF-YDPDTGHITLDGVEIQKLQLKWLR 534 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G-~~vaiVG~SGsGKSTL~~lL~g~-y~p~~G~I~idG~di~~~~~~~lR 534 (703)
+.|.++++..-+-.. +-.-.+|+++.++ ++++|+||||+||||+++.+.+. +-+..|
T Consensus 294 ~~i~l~~~rhPll~~---~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------------------ 352 (771)
T TIGR01069 294 GKIILENARHPLLKE---PKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------------------ 352 (771)
T ss_pred CCEEEccccCceecC---CceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC------------------
Confidence 357777655422111 0122478888887 99999999999999999999886 333333
Q ss_pred cceEEEccCCC-CCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 535 QQMGLVSQEPV-LFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 535 ~~i~~V~Qe~~-LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
.+||.... .+ .+.+++... ..+++ .+.++-..||+|++|+..|++++
T Consensus 353 ---~~Vpa~~~~~~--~~~d~i~~~----i~~~~-----------------------si~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 353 ---IPIPANEHSEI--PYFEEIFAD----IGDEQ-----------------------SIEQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred ---CCccCCccccc--cchhheeee----cChHh-----------------------HHhhhhhHHHHHHHHHHHHHHhc
Confidence 14555432 11 123333211 11110 11133466999999999999987
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHH-HHHHHc-CCceEEEEccCchHH
Q 005314 614 VKAPKILLLDEATSALDAESERVIQD-ALERVM-VGRTTVVIAHRLSTI 660 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~-~l~~~~-~~rT~IvIaHrlsti 660 (703)
.+|+++|||||++++|+..-..+.. .++.+. +++++|++||....-
T Consensus 401 -~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 401 -TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred -CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 7899999999999999998877744 444432 478999999997753
No 432
>PRK13695 putative NTPase; Provisional
Probab=99.21 E-value=1.3e-11 Score=120.79 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=65.1
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCEEEeecc--CcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q 005314 593 GERGIQLSGGQKQRVAIARAMVKAPKILLLDEA--TSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVK 670 (703)
Q Consensus 593 Ge~G~~LSGGQkQRiaIARAllk~p~ILlLDEa--TSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~ 670 (703)
+.....+||+++-++.+++..+++|+++++||+ +..+|....+.+.+++ ..++++|+++|+-..-..+|+|..+.
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~ 149 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRP 149 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccC
Confidence 344456999999999999999999999999995 4455554444444444 34799999999966667899999999
Q ss_pred CCEEEEe
Q 005314 671 NGVIAEK 677 (703)
Q Consensus 671 ~G~Ive~ 677 (703)
+|+|.+-
T Consensus 150 ~~~i~~~ 156 (174)
T PRK13695 150 GGRVYEL 156 (174)
T ss_pred CcEEEEE
Confidence 9999875
No 433
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.20 E-value=1.1e-10 Score=132.44 Aligned_cols=107 Identities=29% Similarity=0.469 Sum_probs=88.3
Q ss_pred HHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC--CCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCc
Q 005314 581 ISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA--PKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRL 657 (703)
Q Consensus 581 I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~--p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrl 657 (703)
+...--||=|. ......||||+.|||-||+.|-.+ -=+++||||+.+|=+.--.++.+.|.+++ .|.|+|||-|+.
T Consensus 465 L~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 465 LVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 33333344443 234568999999999999999876 45899999999999997777888887765 489999999999
Q ss_pred hHHhhcCEEEEE------eCCEEEEecChhHHhccCC
Q 005314 658 STIRDADLIAVV------KNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 658 sti~~aD~I~vl------~~G~Ive~Gth~eLl~~~~ 688 (703)
.+++.||.|+=| ..|+||.+||.+++|+.++
T Consensus 544 dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~ 580 (935)
T COG0178 544 DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPE 580 (935)
T ss_pred HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCc
Confidence 999999999998 5689999999999998743
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.19 E-value=3.3e-11 Score=128.61 Aligned_cols=143 Identities=22% Similarity=0.247 Sum_probs=102.4
Q ss_pred eeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCC
Q 005314 480 LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGK 559 (703)
Q Consensus 480 isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~ 559 (703)
+++.+++|+.++|+|++||||||+++.|+++++|..|.|.|+ |..++.+.. +..+.++.+... . +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~--~---------~- 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG--Q---------G- 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC--C---------C-
Confidence 557788999999999999999999999999999999988885 444444322 233333322100 0 0
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHH
Q 005314 560 EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQD 639 (703)
Q Consensus 560 ~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~ 639 (703)
....+.+ =+++++|-.+|+++++||+.+ . .+.+
T Consensus 202 ~~~~~~~----------------------------------------~~l~~~Lr~~pd~ii~gE~r~---~----e~~~ 234 (308)
T TIGR02788 202 LAKVTPK----------------------------------------DLLQSCLRMRPDRIILGELRG---D----EAFD 234 (308)
T ss_pred cCccCHH----------------------------------------HHHHHHhcCCCCeEEEeccCC---H----HHHH
Confidence 1112211 235666778999999999997 2 2344
Q ss_pred HHHHHcCCc-eEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHh
Q 005314 640 ALERVMVGR-TTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 640 ~l~~~~~~r-T~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
.++....|. +++.++|..+.....||+..|..|+++..|.-.+.+
T Consensus 235 ~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 235 FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 555544554 568999999988889999999999999988877665
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.17 E-value=4.4e-11 Score=126.44 Aligned_cols=172 Identities=28% Similarity=0.358 Sum_probs=116.2
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE--CCee---------CCCCC----HHHHhc--ceEEEccCCCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL--DGVE---------IQKLQ----LKWLRQ--QMGLVSQEPVLF 547 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i--dG~d---------i~~~~----~~~lR~--~i~~V~Qe~~LF 547 (703)
+||+..++||.+|-||||-++.|+|-.+|+-|.--- |+.+ +..+- ...++. ..-||.|=|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 699999999999999999999999999998875321 1111 11110 000110 112333334444
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCc
Q 005314 548 NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATS 627 (703)
Q Consensus 548 ~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTS 627 (703)
.+++.+++.-- .+.-+.+++.+-..+-+++ ...-.+||||+-||.|||-+...+++++++|||.|
T Consensus 178 k~~v~~~l~~~-~~r~~~~~~~~~~~L~~~~--------------~re~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 178 KGTVGSLLDRK-DERDNKEEVCDQLDLNNLL--------------DREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHH-hhcccHHHHHHHHHHhhHH--------------HhhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 45555555322 1111233333332222222 12346899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhh-cCEEEEEeC
Q 005314 628 ALDAESERVIQDALERV-MVGRTTVVIAHRLSTIRD-ADLIAVVKN 671 (703)
Q Consensus 628 aLD~~se~~v~~~l~~~-~~~rT~IvIaHrlsti~~-aD~I~vl~~ 671 (703)
-||....-.--..|+.+ ..++=+|+|-|+||.+.. .|-|+++-.
T Consensus 243 YLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred cchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 99999877777777665 458899999999999875 899999864
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.16 E-value=3.8e-10 Score=115.33 Aligned_cols=158 Identities=13% Similarity=0.227 Sum_probs=92.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHH-HHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTV-ISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL-~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
.|.++++...+++ -+++|+.+.|+|++||||||+ .+++.++.++....+.+... .+.+++
T Consensus 7 ~~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~~--- 67 (230)
T PRK08533 7 ELSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTEF--- 67 (230)
T ss_pred EEEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHH---
Confidence 4566666666542 279999999999999999999 69999987655444433321 111121
Q ss_pred eEEEccCCCCCcccHHHHH-hcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 537 MGLVSQEPVLFNDTVRVNI-AYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 537 i~~V~Qe~~LF~gTIreNI-~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
.++. .+| . +. ++ ++.. +.+. .+ +-...+|+++.++-.++|.+-.
T Consensus 68 ---------------~~~~~~~g-~-~~--~~------------~~~~--~~l~-~~-~~~~~~~~~~~~~~~l~~il~~ 112 (230)
T PRK08533 68 ---------------IKQMMSLG-Y-DI--NK------------KLIS--GKLL-YI-PVYPLLSGNSEKRKFLKKLMNT 112 (230)
T ss_pred ---------------HHHHHHhC-C-ch--HH------------Hhhc--CcEE-EE-EecccccChHHHHHHHHHHHHH
Confidence 1221 122 1 11 01 1100 0000 00 0012366776666555554433
Q ss_pred ----CCCEEEeeccCcCC----CHHHHHHHHHHHHHHcC-CceEEEEccCchHHh---------hcCEEEEEe
Q 005314 616 ----APKILLLDEATSAL----DAESERVIQDALERVMV-GRTTVVIAHRLSTIR---------DADLIAVVK 670 (703)
Q Consensus 616 ----~p~ILlLDEaTSaL----D~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~---------~aD~I~vl~ 670 (703)
+|+++++||||+.+ |+...+.+.+.++.+.+ ++|+++ ||....+. -||-|+.|+
T Consensus 113 ~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 113 RRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 69999999999999 77777778888876644 665554 56544321 257777776
No 437
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.16 E-value=1e-10 Score=118.49 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=42.5
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcC-CCCCCCCeEEE
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQR-FYDPDTGHITL 520 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g-~y~p~~G~I~i 520 (703)
..+.+|++|.+++|++++|.||||+||||+++.+.+ .+.++.|....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 468999999999999999999999999999999999 77788887644
No 438
>PRK14079 recF recombination protein F; Provisional
Probab=99.15 E-value=7.2e-10 Score=120.26 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=61.5
Q ss_pred CCCChhHHHHHHHHHHhc---------cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEE
Q 005314 597 IQLSGGQKQRVAIARAMV---------KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIA 667 (703)
Q Consensus 597 ~~LSGGQkQRiaIARAll---------k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~ 667 (703)
.-+|+||+++++||+.|. .+|+|+|||||+|.||.+....+.+.|... ..+.|.-|+ .-.-+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcCC---CCCCCceEE
Confidence 468999999999999998 899999999999999999999998888553 244444333 335599999
Q ss_pred EEeCCEEEE
Q 005314 668 VVKNGVIAE 676 (703)
Q Consensus 668 vl~~G~Ive 676 (703)
++++|++.-
T Consensus 337 ~~~~~~~~~ 345 (349)
T PRK14079 337 RIEAGVFTP 345 (349)
T ss_pred EEeccEecC
Confidence 999998764
No 439
>PRK01156 chromosome segregation protein; Provisional
Probab=99.14 E-value=1.4e-10 Score=141.48 Aligned_cols=76 Identities=29% Similarity=0.393 Sum_probs=67.3
Q ss_pred CCCCCChhHHHHHHH------HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-C--C-ceEEEEccCchHHhhcC
Q 005314 595 RGIQLSGGQKQRVAI------ARAMVKAPKILLLDEATSALDAESERVIQDALERVM-V--G-RTTVVIAHRLSTIRDAD 664 (703)
Q Consensus 595 ~G~~LSGGQkQRiaI------ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~--~-rT~IvIaHrlsti~~aD 664 (703)
....|||||+||+|| ||+++.+|++++|||||++||+.....+.+.|.... . + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999965 599999999999999999999999999988886432 2 2 48999999999999999
Q ss_pred EEEEEe
Q 005314 665 LIAVVK 670 (703)
Q Consensus 665 ~I~vl~ 670 (703)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
No 440
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.14 E-value=2e-10 Score=123.67 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCccccc-----------ceeEEeeCCCEEEE
Q 005314 424 RAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFR-----------DLCLAIPSGKMVAL 492 (703)
Q Consensus 424 ~~~~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~-----------~isl~I~~G~~vai 492 (703)
++..+.+|++++++.++.... .+....+.|+|+||+|.||+. ..+|+ |+++.|.+||+++|
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~------~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~I 173 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD------DPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLI 173 (415)
T ss_pred eccccHhHHHHHhCCCccCCC------CccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEE
Confidence 455678999999997654211 113346789999999999953 47897 99999999999999
Q ss_pred EcCCCCChHHHHHhHcCCCCCC
Q 005314 493 VGESGSGKSTVISLLQRFYDPD 514 (703)
Q Consensus 493 VG~SGsGKSTL~~lL~g~y~p~ 514 (703)
|||+|||||||+++|.+.+...
T Consensus 174 vG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 174 VAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred ECCCCCChhHHHHHHHHhhccc
Confidence 9999999999999999998654
No 441
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.07 E-value=8.5e-11 Score=128.49 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=56.8
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC-eEEECCeeCCCCCHHHHhcceEEEccCC
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG-HITLDGVEIQKLQLKWLRQQMGLVSQEP 544 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G-~I~idG~di~~~~~~~lR~~i~~V~Qe~ 544 (703)
.+|+++||+|++||.++|+||||||||||++ .++..|++| +|.+||+++...+...++.-= .|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 5799999999999999999999999999999 788888888 799999999887654433211 888864
No 442
>PRK12369 putative transporter; Reviewed
Probab=99.06 E-value=3.6e-06 Score=90.13 Aligned_cols=244 Identities=14% Similarity=0.070 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHH
Q 005314 180 ALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGL 259 (703)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~ 259 (703)
...|++++++..++..++.|+..+.+.+.+.-+.+.+.++-+..+ +..| |+. +|++.|+...-+...+....
T Consensus 66 l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~-~~iD---NPD----QRI~EDi~~f~~~tl~l~~~ 137 (326)
T PRK12369 66 ILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKR-DNIE---GSS----QRIQEDTYRFAKIMESLGLS 137 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCC---Ccc----HhHHHHHHHHHHHHHHHHHH
Confidence 444555666666777788888888899999999999999988744 1233 343 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 005314 260 HVQNIATLFAGVIIAFEANWQL------------ALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGS 327 (703)
Q Consensus 260 ~~~~~~~~i~~~i~~~~~~~~l------------alv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 327 (703)
+++++++++...++++.++..+ ..++++...+...+..+.++.+.+...+.++..++....+...=++
T Consensus 138 ~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ 217 (326)
T PRK12369 138 FLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDD 217 (326)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccc
Confidence 9999999988888888766323 2222222233333345567777766666666666554433321111
Q ss_pred HHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005314 328 IRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSM 407 (703)
Q Consensus 328 i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~ 407 (703)
.+. +.-.....++|.+..+...+...+...+..+..+..+ +..++-+.+.+.....|++++|.++..-.++..
T Consensus 218 ae~---~~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~~y~~----~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~ 290 (326)
T PRK12369 218 KKN---YAKPETLIELFTGLRFNYFRLFLHYGYFNIWLISFSQ----MMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQ 290 (326)
T ss_pred hhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 111 2111344555555555555554444444433333333 333344444567788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005314 408 AATGLSQSGILAPEASRAKSAIASVYAILDR 438 (703)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~ 438 (703)
...+++-+...+.++..-.+..+|+.++.+.
T Consensus 291 v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 291 VRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988653
No 443
>PRK03918 chromosome segregation protein; Provisional
Probab=99.05 E-value=3.2e-10 Score=138.24 Aligned_cols=75 Identities=29% Similarity=0.409 Sum_probs=67.5
Q ss_pred CCCChhHHH------HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEE
Q 005314 597 IQLSGGQKQ------RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRDADLIAVV 669 (703)
Q Consensus 597 ~~LSGGQkQ------RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~aD~I~vl 669 (703)
..|||||+| |+||||+++.+|+++||||||++||+.+...+.+.|..+.. +.|+|+|||+......||+|++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 579999999 66677789999999999999999999999999999987653 57999999999988999999999
Q ss_pred eC
Q 005314 670 KN 671 (703)
Q Consensus 670 ~~ 671 (703)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 444
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.05 E-value=1.3e-09 Score=107.32 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=62.7
Q ss_pred cccchhcCCCCCCChhHHH-----HHHHHHH-hccCCCEEEeeccCcCCC---HHHHHHHHHHHHHHc-CCceEEEEccC
Q 005314 587 GYDTIVGERGIQLSGGQKQ-----RVAIARA-MVKAPKILLLDEATSALD---AESERVIQDALERVM-VGRTTVVIAHR 656 (703)
Q Consensus 587 G~dT~vGe~G~~LSGGQkQ-----RiaIARA-llk~p~ILlLDEaTSaLD---~~se~~v~~~l~~~~-~~rT~IvIaHr 656 (703)
|....+......+|+||+| +..+.++ .-.+|+++++||||+.+| ......+.+.+..+. .|.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444455566788999999 3444444 556899999999999999 767777777766543 47899999998
Q ss_pred chH---------H-hhcCEEEEEe
Q 005314 657 LST---------I-RDADLIAVVK 670 (703)
Q Consensus 657 lst---------i-~~aD~I~vl~ 670 (703)
... + ..||.|+.|+
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEE
Confidence 764 3 4499999997
No 445
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.05 E-value=1.9e-06 Score=94.16 Aligned_cols=243 Identities=9% Similarity=-0.006 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHH
Q 005314 179 WALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALG 258 (703)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~ 258 (703)
....|+.++++...+..+..|+..+...+.+..+.+.+.++-++.. ..| ++ -+|++.|+...-+...+...
T Consensus 140 ~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~ie---nP----DQRIqEDi~~F~~~tl~L~~ 210 (409)
T PRK11098 140 EVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HIE---GA----AQRVQEDTMRFASTLENLGV 210 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC---Cc----cHhHHHHHHHHHHHHHHHHH
Confidence 3445555666666677777888888888888888888888777654 233 32 48999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005314 259 LHVQNIATLFAGVIIAFEANWQL-------------ALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAV 325 (703)
Q Consensus 259 ~~~~~~~~~i~~~i~~~~~~~~l-------------alv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 325 (703)
.+++++++++..+.+++.++..+ ..++++...+-..+..+.++++.+..-+.++..++....+...=
T Consensus 211 ~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvr 290 (409)
T PRK11098 211 SFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGE 290 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhh
Confidence 99999999988888888776543 22222222222333445677777777777666666555444322
Q ss_pred hhHHHHHHhCch-HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005314 326 GSIRTVASFCAE-EKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFA 404 (703)
Q Consensus 326 ~~i~tvk~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~ 404 (703)
++.+ +.| ....++|.+..++..+...+...... +.....++..++-+.+.+.....|++++|.+.....+
T Consensus 291 enaE-----~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~----f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~A 361 (409)
T PRK11098 291 DDAD-----RATPPTVRELFSNVRKNYFRLYFHYMYFNI----ARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNV 361 (409)
T ss_pred hhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 2332 122 23445555555555554444433333 3333333344444444577788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005314 405 LSMAATGLSQSGILAPEASRAKSAIASVYAILDRK 439 (703)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~ 439 (703)
+.....+++-+...+..+..-.+..+|+.++.+.-
T Consensus 362 F~~V~~als~~v~sy~~lael~A~~~RL~~F~~~l 396 (409)
T PRK11098 362 FGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAAL 396 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887643
No 446
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.04 E-value=3.6e-10 Score=133.98 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=95.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE-EEccCCCCCcccHHHH
Q 005314 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG-LVSQEPVLFNDTVRVN 554 (703)
Q Consensus 476 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~-~V~Qe~~LF~gTIreN 554 (703)
|-+|+++. ..+..+.|.|||++||||+++.+.-. .+-.++| +||-+.. ..-++.++
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~---------------------~~maq~G~~vpa~~~-~~i~~~~~ 373 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLA---------------------ALMAKSGLPIPANEP-SEIPVFKE 373 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHH---------------------HHHHHhCCCcccCCC-ccccccce
Confidence 33444443 34567999999999999999988421 1223444 4444420 01122233
Q ss_pred HhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHH
Q 005314 555 IAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESE 634 (703)
Q Consensus 555 I~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se 634 (703)
|... - |.+-.+..+-..||+|++|+..|+|++ .+|+++|||||++++|+...
T Consensus 374 i~~~-i--------------------------g~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg 425 (782)
T PRK00409 374 IFAD-I--------------------------GDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEG 425 (782)
T ss_pred EEEe-c--------------------------CCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHH
Confidence 3211 1 111112234567999999999999999 89999999999999999987
Q ss_pred HHHHHH-HHHH-cCCceEEEEccCchHHhhcCEEEEEeCCEEE
Q 005314 635 RVIQDA-LERV-MVGRTTVVIAHRLSTIRDADLIAVVKNGVIA 675 (703)
Q Consensus 635 ~~v~~~-l~~~-~~~rT~IvIaHrlsti~~aD~I~vl~~G~Iv 675 (703)
..+..+ +..+ .++.|+|++||.......+.....+.++.+.
T Consensus 426 ~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~ 468 (782)
T PRK00409 426 AALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE 468 (782)
T ss_pred HHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE
Confidence 777554 3333 2478999999998876654333333455554
No 447
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.04 E-value=2.7e-10 Score=142.91 Aligned_cols=76 Identities=29% Similarity=0.333 Sum_probs=69.6
Q ss_pred CCCCCChhHHHHHHHHHHh----ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q 005314 595 RGIQLSGGQKQRVAIARAM----VKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVK 670 (703)
Q Consensus 595 ~G~~LSGGQkQRiaIARAl----lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~ 670 (703)
....||||||||++|||++ +++|+++||||||++||+.+...+.+.|..+.++.|+|+|||++..+..||+++.+.
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeee
Confidence 4468999999999999998 578899999999999999999999999988877889999999999999999998664
No 448
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.01 E-value=5.7e-11 Score=138.56 Aligned_cols=167 Identities=14% Similarity=0.071 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHH-----HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 310 SKKMYEEASQVANDAVGSIRTVASFCAEEKVMELY-----QKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAG 384 (703)
Q Consensus 310 ~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 384 (703)
...........+.|.+.++.+||..+.|......| ........+...+..........+..++......+++|+|
T Consensus 35 ~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig 114 (644)
T PRK10733 35 STFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIG 114 (644)
T ss_pred HHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHH
Confidence 33344456667888889999999999888776666 4555555555555555544455555666667778888999
Q ss_pred HHHHHcCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccccCCCCcEEE
Q 005314 385 ARLVEAGKTTFQ---EVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEF 461 (703)
Q Consensus 385 ~~lv~~g~~s~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~~I~~ 461 (703)
++++..|.++.| .++++.........+ ..+...+.++.....+.+++.++.+...+. .
T Consensus 115 ~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~----------~-------- 175 (644)
T PRK10733 115 VWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREP----------S-------- 175 (644)
T ss_pred HHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCH----------H--------
Confidence 999999999988 565554444444444 445555667777777777777766542110 0
Q ss_pred EEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 462 QHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 462 ~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.++.+...+++| +.|+||+||||||+++.+++..
T Consensus 176 --------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 176 --------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 209 (644)
T ss_pred --------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHc
Confidence 011222255666 9999999999999999998755
No 449
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.01 E-value=1.9e-09 Score=129.16 Aligned_cols=67 Identities=22% Similarity=0.303 Sum_probs=58.7
Q ss_pred hccCCCEEEeeccCcCC-CHHHHHHHHHHHHHHc-CCceEEEEccCchHH----------hhcCEEEEEeCCEEEEecC
Q 005314 613 MVKAPKILLLDEATSAL-DAESERVIQDALERVM-VGRTTVVIAHRLSTI----------RDADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 613 llk~p~ILlLDEaTSaL-D~~se~~v~~~l~~~~-~~rT~IvIaHrlsti----------~~aD~I~vl~~G~Ive~Gt 679 (703)
+..+|+++++|||+++| |+...+.+.+.+++.. .+.++|++||.++.+ ..||+.++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35799999999999999 6899999999998764 478999999999887 4799999999999987764
No 450
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=7.8e-10 Score=136.48 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCCCChhHHHHHHHHHHhcc----------CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hc
Q 005314 596 GIQLSGGQKQRVAIARAMVK----------APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DA 663 (703)
Q Consensus 596 G~~LSGGQkQRiaIARAllk----------~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~a 663 (703)
-..||||+++|++||+||.. +|++|||||||++||+++...+.+.|.++. .|+||++|||...... .+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 36899999999999999985 799999999999999999999999998864 4789999999999875 49
Q ss_pred CEEEEEeCC
Q 005314 664 DLIAVVKNG 672 (703)
Q Consensus 664 D~I~vl~~G 672 (703)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999864
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.99 E-value=7.3e-10 Score=110.73 Aligned_cols=119 Identities=26% Similarity=0.360 Sum_probs=78.4
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCCC-CCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHH
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDPD-TGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAE 567 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p~-~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~e 567 (703)
.+.|+||+||||||+++.|++.+++. .|.|..-..++. +... ....++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeec------------------------
Confidence 68999999999999999999988754 567665443331 1100 011122221
Q ss_pred HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCC
Q 005314 568 VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVG 647 (703)
Q Consensus 568 i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~ 647 (703)
.+|.....++. +|++|+..+|+++++||+. |.++- ..+++....|
T Consensus 55 -----------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~---~~~l~~a~~G 99 (198)
T cd01131 55 -----------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETI---RLALTAAETG 99 (198)
T ss_pred -----------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHH---HHHHHHHHcC
Confidence 11111111111 4899999999999999996 55543 3444444568
Q ss_pred ceEEEEccCchHHhhcCEEEEEe
Q 005314 648 RTTVVIAHRLSTIRDADLIAVVK 670 (703)
Q Consensus 648 rT~IvIaHrlsti~~aD~I~vl~ 670 (703)
.+++.++|..+.....||++.|-
T Consensus 100 ~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 100 HLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred CEEEEEecCCcHHHHHhHHHhhc
Confidence 99999999999888888887663
No 452
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.97 E-value=8.4e-10 Score=110.72 Aligned_cols=78 Identities=28% Similarity=0.365 Sum_probs=65.6
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCC------------CCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHH
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYD------------PDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVR 552 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIr 552 (703)
++|++++|+||||||||||+++|++.++ |..|+ ++|.|+..++.+.+++. +.|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 6899999999999999999999999986 88898 69999999999988885 4688889999999
Q ss_pred HHHhcCCCCCCCHHHHHHHH
Q 005314 553 VNIAYGKEGNATEAEVLAAA 572 (703)
Q Consensus 553 eNI~~g~~~~~t~~ei~~A~ 572 (703)
+| .|| ...+.+.+++
T Consensus 78 ~~-~y~----~~~~~i~~~l 92 (205)
T PRK00300 78 GN-YYG----TPRSPVEEAL 92 (205)
T ss_pred Cc-ccc----CcHHHHHHHH
Confidence 99 476 2345555554
No 453
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.96 E-value=1e-09 Score=137.75 Aligned_cols=75 Identities=21% Similarity=0.212 Sum_probs=69.7
Q ss_pred CCCChhHHHHHHHHHHhc----cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q 005314 597 IQLSGGQKQRVAIARAMV----KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKN 671 (703)
Q Consensus 597 ~~LSGGQkQRiaIARAll----k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~ 671 (703)
..||||||++++||+++. ++||++|||||+++||+.....+.+.|....++.++|+|||+..++..||+++.+..
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 489999999999999997 588999999999999999999999999988778889999999999999999998753
No 454
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.95 E-value=3e-09 Score=116.83 Aligned_cols=165 Identities=20% Similarity=0.230 Sum_probs=115.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-++-++++-.|... ..+++++ |++.+||+++|+|++|+|||||++.|+|.++|+.|.|.+.|..-
T Consensus 130 ~~~r~~i~~~l~TG--iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 130 AFEREEITDVFETG--IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred chheechhhccCCC--CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 35666676667543 4678885 99999999999999999999999999999999998877666332
Q ss_pred EEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc---
Q 005314 538 GLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV--- 614 (703)
Q Consensus 538 ~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll--- 614 (703)
-+++|.+.. .++..++. .|.+=..-.+-|.|+|+|.+.+.+.+
T Consensus 195 -----------~ev~e~~~~-------------~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 195 -----------REVKDFIRK-------------ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred -----------ccHHHHHHH-------------Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 223333321 01110110 11122345678999999999999887
Q ss_pred ----cCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCEEEE
Q 005314 615 ----KAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGVIAE 676 (703)
Q Consensus 615 ----k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive 676 (703)
.++-+|++||+|...|+. +.|-.++.+.- .|.|..+-+|-...+.+|-+ .++|.|..
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~ 302 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITG 302 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEE
Confidence 788999999999999997 45655665543 47788888884334455544 57888853
No 455
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.92 E-value=4.3e-06 Score=88.26 Aligned_cols=226 Identities=10% Similarity=0.015 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Q 005314 150 MLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFD 229 (703)
Q Consensus 150 ~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~ 229 (703)
+....+..-+.+.+++.+.. ..........++++++...+++....|+....+.+.+..+...+.++.++-. .||.
T Consensus 42 lsv~~~~~~g~~~~aL~~~d---~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~ 117 (281)
T PF06472_consen 42 LSVRINFWNGDFYNALQQKD---LQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYR 117 (281)
T ss_pred HHHHHHHHhhHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHh
Confidence 33444455555666554421 1222223345556666777778888888888899999999999999888776 4444
Q ss_pred cCCCC---hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhH
Q 005314 230 EPGHS---SGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLAL-IVLVLVPLLVLNGYAHMKFLKG 305 (703)
Q Consensus 230 ~~~~~---~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lal-v~l~~~~l~~~~~~~~~~~~~~ 305 (703)
- .+. .-..=+|++.|++.+-+........++.+++.++...++++..+..+.+ ++++...+...+....++.+.+
T Consensus 118 l-~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~ 196 (281)
T PF06472_consen 118 L-NNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGR 196 (281)
T ss_pred h-hccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 2 122 2345589999999999999999999999998888887777766555555 5555666666667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 005314 306 FSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFL-LYAVYACS 380 (703)
Q Consensus 306 ~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 380 (703)
...+.++..++.........++.+.|..++-|+.+.++.++...+..+...+..........+..+. .++..++-
T Consensus 197 l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 272 (281)
T PF06472_consen 197 LNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNFYVKYLSSILP 272 (281)
T ss_pred HHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988887777777766666666655 44444433
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.91 E-value=4.3e-09 Score=100.44 Aligned_cols=129 Identities=18% Similarity=0.143 Sum_probs=77.8
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHH
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEV 568 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei 568 (703)
.++|.|++|+||||+++.+++...+..|.|.+-+.+...- . ++++.... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~---~------------------~~~~~~~~-~-------- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE---E------------------LTERLIGE-S-------- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH---H------------------HHHHHhhh-h--------
Confidence 3789999999999999999998877666665533221110 0 11111000 0
Q ss_pred HHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHH----------HHHHH
Q 005314 569 LAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAES----------ERVIQ 638 (703)
Q Consensus 569 ~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~s----------e~~v~ 638 (703)
....++. ...+.......+.++.++++.+++...+|+++|+||+++-++... .+.+.
T Consensus 51 ------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~ 117 (165)
T cd01120 51 ------------LKGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELR 117 (165)
T ss_pred ------------hcccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHH
Confidence 0000111 111222223344555668899999999999999999997655543 34444
Q ss_pred HHHHHHc-CCceEEEEccCchHH
Q 005314 639 DALERVM-VGRTTVVIAHRLSTI 660 (703)
Q Consensus 639 ~~l~~~~-~~rT~IvIaHrlsti 660 (703)
+.+.... .+.|+|+++|.....
T Consensus 118 ~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 118 ELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHhcCCceEEEEEecCCcc
Confidence 4443333 378999999988654
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.91 E-value=5.6e-08 Score=89.47 Aligned_cols=117 Identities=35% Similarity=0.449 Sum_probs=86.5
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCCCCC-CeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYDPDT-GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNAT 564 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~-G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t 564 (703)
++..+.|+||+||||||+++.|++.+.... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999887765 5565655433322221111
Q ss_pred HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHH-----
Q 005314 565 EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQD----- 639 (703)
Q Consensus 565 ~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~----- 639 (703)
............+++.++..+++|-..+|+++++||+....+.........
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred ------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 333445667888999999999999998899999999999999998876654
Q ss_pred --HHHHHcCCceEEEEccC
Q 005314 640 --ALERVMVGRTTVVIAHR 656 (703)
Q Consensus 640 --~l~~~~~~rT~IvIaHr 656 (703)
.......+..+|.++|.
T Consensus 107 ~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 107 LLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHhcCCCEEEEEeCC
Confidence 22334456777778883
No 458
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.86 E-value=9.1e-09 Score=105.09 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=53.3
Q ss_pred CCCChhHHHHHHHHHHhccCC---CEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHH
Q 005314 597 IQLSGGQKQRVAIARAMVKAP---KILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTI 660 (703)
Q Consensus 597 ~~LSGGQkQRiaIARAllk~p---~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti 660 (703)
.++|.|+||.++|+-+++..+ .++++|||-++|.+...+.+.+.|....+ +.-+|+.||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999999988776 89999999999999999999999988766 78899999998765
No 459
>PRK02224 chromosome segregation protein; Provisional
Probab=98.80 E-value=8.3e-09 Score=125.84 Aligned_cols=75 Identities=35% Similarity=0.472 Sum_probs=66.5
Q ss_pred CCCChhHHH------HHHHHHHhccC-----C-CEEEeeccCcCCCHHHHHHHHHHHHHHcC-C-ceEEEEccCchHHhh
Q 005314 597 IQLSGGQKQ------RVAIARAMVKA-----P-KILLLDEATSALDAESERVIQDALERVMV-G-RTTVVIAHRLSTIRD 662 (703)
Q Consensus 597 ~~LSGGQkQ------RiaIARAllk~-----p-~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~-rT~IvIaHrlsti~~ 662 (703)
.+||||||| |+||||++..+ | +++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 3 67999999999999999999998887653 4 479999999999999
Q ss_pred cCEEEEEeC
Q 005314 663 ADLIAVVKN 671 (703)
Q Consensus 663 aD~I~vl~~ 671 (703)
||++++|..
T Consensus 860 ad~~~~~~~ 868 (880)
T PRK02224 860 ADDLVRVEK 868 (880)
T ss_pred cCeeEEeec
Confidence 999999974
No 460
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.80 E-value=2.5e-08 Score=100.86 Aligned_cols=133 Identities=21% Similarity=0.224 Sum_probs=83.4
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC--------CCCCCCeEEECCeeCCCCCHHHHhcceEEEccCC
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF--------YDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEP 544 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~--------y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~ 544 (703)
+..|-+|++|++++|++++|.||+|+||||+++.+... |=|.+- ..++++.+
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~------------------~~i~~~~~-- 75 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKS------------------MRLSLVDR-- 75 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccc------------------cEeccccE--
Confidence 35789999999999999999999999999999887654 222210 11222111
Q ss_pred CCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeec
Q 005314 545 VLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDE 624 (703)
Q Consensus 545 ~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDE 624 (703)
.+..-.-.||+..| .... ..|+ +|++-.=....+|+++||||
T Consensus 76 i~~~~~~~d~~~~~-~StF-~~e~------------------------------------~~~~~il~~~~~~sLvLlDE 117 (218)
T cd03286 76 IFTRIGARDDIMKG-ESTF-MVEL------------------------------------SETANILRHATPDSLVILDE 117 (218)
T ss_pred EEEecCcccccccC-cchH-HHHH------------------------------------HHHHHHHHhCCCCeEEEEec
Confidence 11111223444333 1101 1122 22211111125789999999
Q ss_pred cCcCCCHHHHHHHHHH-HHHHcC--CceEEEEccCchHHhhc
Q 005314 625 ATSALDAESERVIQDA-LERVMV--GRTTVVIAHRLSTIRDA 663 (703)
Q Consensus 625 aTSaLD~~se~~v~~~-l~~~~~--~rT~IvIaHrlsti~~a 663 (703)
|.+++|+.....+..+ ++.+.+ +.++|++||....+...
T Consensus 118 ~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 118 LGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 9999999987777766 454443 78999999999887654
No 461
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.78 E-value=1.5e-08 Score=124.71 Aligned_cols=76 Identities=33% Similarity=0.333 Sum_probs=64.7
Q ss_pred CCCCChhHHHHHHHHHHhcc--------CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCE
Q 005314 596 GIQLSGGQKQRVAIARAMVK--------APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADL 665 (703)
Q Consensus 596 G~~LSGGQkQRiaIARAllk--------~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~ 665 (703)
-..|||||+||++|||||.. +|++|||||||++||+.+-..+++.|..+. .|+||++|||-...... ..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 46899999999999999995 899999999999999999999999998875 58999999996555544 455
Q ss_pred EEEEeC
Q 005314 666 IAVVKN 671 (703)
Q Consensus 666 I~vl~~ 671 (703)
|.|-+.
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 555543
No 462
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.73 E-value=1.1e-07 Score=97.59 Aligned_cols=148 Identities=15% Similarity=0.194 Sum_probs=86.9
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHc-CCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHH-hcCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQ-RFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNI-AYGKE 560 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~-g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI-~~g~~ 560 (703)
-+++|..+.|.|++||||||+...++ +... ..+ .+.|+..|-.. ..+.+|. .+|
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~-------------------~~~y~~~e~~~--~~~~~~~~~~g-- 76 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGK-------------------KVYVITTENTS--KSYLKQMESVK-- 76 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCC-------------------EEEEEEcCCCH--HHHHHHHHHCC--
Confidence 58999999999999999999997764 2221 222 34444443211 1122222 122
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHHhhccccchhc---CCCCCCChhHHHHHHHHHHhcc--CCCEEEeeccCcCCC---HH
Q 005314 561 GNATEAEVLAAAELANAHQFISSLKQGYDTIVG---ERGIQLSGGQKQRVAIARAMVK--APKILLLDEATSALD---AE 632 (703)
Q Consensus 561 ~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG---e~G~~LSGGQkQRiaIARAllk--~p~ILlLDEaTSaLD---~~ 632 (703)
-+. .+++ ..|+-..+. +.....+.++++.+...+..++ +|+++++||+|+.+| .+
T Consensus 77 ~~~--------------~~~~---~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~ 139 (234)
T PRK06067 77 IDI--------------SDFF---LWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEED 139 (234)
T ss_pred CCh--------------hHHH---hCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHH
Confidence 011 1111 111111110 1123456789999999999998 899999999996555 44
Q ss_pred HHHHHHHHHHHH-cCCceEEEEccCchH-------H-hhcCEEEEEeC
Q 005314 633 SERVIQDALERV-MVGRTTVVIAHRLST-------I-RDADLIAVVKN 671 (703)
Q Consensus 633 se~~v~~~l~~~-~~~rT~IvIaHrlst-------i-~~aD~I~vl~~ 671 (703)
.-..+.+.+..+ .+++|+++++|.... + .-+|-++.|+.
T Consensus 140 ~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 140 DILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 334444445442 347899999997653 2 23677777763
No 463
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.71 E-value=2e-08 Score=110.52 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=72.3
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC---CeeCCCCCHHH-
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD---GVEIQKLQLKW- 532 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id---G~di~~~~~~~- 532 (703)
+.++.++++..|..+ ..+++.++ +|.+||+++|+|+||||||||++.|.|+.+|+.|.|.+. |.++.++..+.
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 468999999999753 57899996 999999999999999999999999999999999999884 67777665433
Q ss_pred ---HhcceEEEccCC
Q 005314 533 ---LRQQMGLVSQEP 544 (703)
Q Consensus 533 ---lR~~i~~V~Qe~ 544 (703)
.++.|++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 346899999964
No 464
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.62 E-value=6e-07 Score=108.29 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=47.9
Q ss_pred HHHHhccCCCEEEeeccCcCC-CHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh
Q 005314 609 IARAMVKAPKILLLDEATSAL-DAESERVIQDALERVM-VGRTTVVIAHRLSTIRD 662 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaL-D~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~ 662 (703)
|+|++..+|+++++|||++.| |+.+.+.+.+.++... .|.++|++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 789999999999999999999 7889999999997764 47899999999998754
No 465
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.61 E-value=0.0001 Score=73.88 Aligned_cols=221 Identities=13% Similarity=0.138 Sum_probs=132.2
Q ss_pred hCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 130 NKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFAVAGCKLI 209 (703)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (703)
.+++++.+.+...+-+...++..++|++.+.+||.+.++. . .+++++.++.++.+++...+...-.+.-.++.
T Consensus 5 ~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~--~-----~~~~~~~~~~l~~~~igaaRR~~DTRvf~rIy 77 (237)
T PF13748_consen 5 ARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGD--V-----WQALMYAALVLLMWAIGAARRIYDTRVFSRIY 77 (237)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--H-----HHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHH
Confidence 4556677666666666677888889999999999987531 1 22334444444444444555544444333444
Q ss_pred HHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 210 KRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLALIVLVLV 289 (703)
Q Consensus 210 ~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~ 289 (703)
.++-..+..+-- +.+.+++.+.+|+ .=..++-+++...+|.++.+++.+++++++++.++.++++.+++.+
T Consensus 78 ~~la~~vi~~qr--------~~~~~~S~i~ARv-~lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l 148 (237)
T PF13748_consen 78 AELAVPVILSQR--------QQGLSVSTIAARV-ALSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLIL 148 (237)
T ss_pred HHHhHHHHHHHH--------HhCCChhHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333333221 1235678888998 4566777899999999999999999999999999998988887776
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 005314 290 PLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGIS 369 (703)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (703)
.++.++...+.++..+...+.+...++-.+.+. ..-...+.+.++...+-..+.+-.-+..+++.
T Consensus 149 ~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~i~---------------~~~~~~l~rHy~~L~~lrI~lSD~EA~~y~~i 213 (237)
T PF13748_consen 149 ALFLLILPRFARRNYRLYRRLNNRLEKEVDIIE---------------RRKPASLRRHYRRLSRLRIRLSDREALGYLLI 213 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHccHhh---------------cCChHHHHHHHHHHHhhhhhhchHHHHHHHHH
Confidence 666665544444443333333333333222221 11223344444555555555555555556555
Q ss_pred HHHHHHHHHHHH
Q 005314 370 FFLLYAVYACSF 381 (703)
Q Consensus 370 ~~~~~~~~~~~~ 381 (703)
..+....+++.+
T Consensus 214 ~i~~~~l~~~~l 225 (237)
T PF13748_consen 214 GIVAALLFVFTL 225 (237)
T ss_pred HHHHHHHHHHHH
Confidence 555444444333
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.56 E-value=8.9e-08 Score=94.70 Aligned_cols=81 Identities=25% Similarity=0.239 Sum_probs=61.3
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCC--CC-cccH
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPV--LF-NDTV 551 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~--LF-~gTI 551 (703)
...+=+.+.+++|+.++|+|++||||||+++.|+++++|+.|.|.+++.+-..+ ..+..++++.|... .+ .-|.
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~---~~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL---PHPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC---CCCCEEEEEEecCCCCCCCccCH
Confidence 355667788999999999999999999999999999999999999977543332 13456777766553 22 3477
Q ss_pred HHHHhcC
Q 005314 552 RVNIAYG 558 (703)
Q Consensus 552 reNI~~g 558 (703)
.+++...
T Consensus 90 ~~~l~~~ 96 (186)
T cd01130 90 ADLLRSA 96 (186)
T ss_pred HHHHHHH
Confidence 7777543
No 467
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.56 E-value=5.4e-08 Score=107.10 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=65.2
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC---eEEECCeeCCCCCHHHH------hcceEEEccCC
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG---HITLDGVEIQKLQLKWL------RQQMGLVSQEP 544 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G---~I~idG~di~~~~~~~l------R~~i~~V~Qe~ 544 (703)
..+++++ |+|.+||+++|+|+||||||||+++|+|+++|+.+ .|-.+|.+++++..+.+ |..+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4689999 99999999999999999999999999999999863 34445666666554444 55799999998
Q ss_pred CCCc-ccHHHHHh
Q 005314 545 VLFN-DTVRVNIA 556 (703)
Q Consensus 545 ~LF~-gTIreNI~ 556 (703)
..+. -++.+|..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 7664 36666664
No 468
>PRK01889 GTPase RsgA; Reviewed
Probab=98.52 E-value=4.9e-08 Score=106.19 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=68.9
Q ss_pred cccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHH
Q 005314 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNI 555 (703)
Q Consensus 476 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI 555 (703)
-++.+.-.+++|++++|||+||+|||||++.|+|...|..|+|.+++...+.. ..++++.+++|+..||+.....|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t---t~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT---TTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch---hhhccEEEecCCCeecCCCchhhh
Confidence 36667777899999999999999999999999999999999999987544332 346789999999999998888888
Q ss_pred hcC
Q 005314 556 AYG 558 (703)
Q Consensus 556 ~~g 558 (703)
.+.
T Consensus 261 ~l~ 263 (356)
T PRK01889 261 QLW 263 (356)
T ss_pred ccc
Confidence 776
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.50 E-value=1.1e-07 Score=106.11 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=85.7
Q ss_pred ceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcC
Q 005314 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYG 558 (703)
Q Consensus 479 ~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g 558 (703)
+.++.+++|+++++|||+|+||||++..|++.+.+..|. ++|++|++|+ |.-+..||+.+.
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr~~ 308 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLRIY 308 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHHHH
Confidence 334456678999999999999999999999988777764 2689999998 667789999763
Q ss_pred -CCCCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCC-----CEEEeeccCcC
Q 005314 559 -KEGNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAP-----KILLLDEATSA 628 (703)
Q Consensus 559 -~~~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p-----~ILlLDEaTSa 628 (703)
+..+.. .+...... -+..|.+.....|...|..-. ...+.-+.+++.++ .+|+||..|..
T Consensus 309 AeilGVpv~~~~~~~Dl~~-------aL~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 309 GKILGVPVHAVKDAADLRL-------ALSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHhCCCeeccCCchhHHH-------HHHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 110111 11111111 233444444455555442211 11223333444444 68999998886
Q ss_pred CCHHHHHHHHHHHHHHc-CCceEEEEccCc
Q 005314 629 LDAESERVIQDALERVM-VGRTTVVIAHRL 657 (703)
Q Consensus 629 LD~~se~~v~~~l~~~~-~~rT~IvIaHrl 657 (703)
- .+.+.+.... .+.+-+++|+=-
T Consensus 379 ~------~l~~i~~~f~~~~~~g~IlTKlD 402 (484)
T PRK06995 379 D------TLNEVVQAYRGPGLAGCILTKLD 402 (484)
T ss_pred H------HHHHHHHHhccCCCCEEEEeCCC
Confidence 2 2333333322 256777777743
No 470
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.47 E-value=2.2e-07 Score=100.81 Aligned_cols=88 Identities=25% Similarity=0.292 Sum_probs=66.5
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCC--CCC-eEEECCeeCCCCCHHHHhcceEEEccCCC-----CCcccHHHHHh
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDP--DTG-HITLDGVEIQKLQLKWLRQQMGLVSQEPV-----LFNDTVRVNIA 556 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p--~~G-~I~idG~di~~~~~~~lR~~i~~V~Qe~~-----LF~gTIreNI~ 556 (703)
++|..++|+||+||||||+++.|++++.+ ..+ .|.....++ ++..+.++...++|.|... -|..+|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999843 334 565555455 5777788777889988643 58899999998
Q ss_pred cCCCC-----CC-CHHHHHHHHHH
Q 005314 557 YGKEG-----NA-TEAEVLAAAEL 574 (703)
Q Consensus 557 ~g~~~-----~~-t~~ei~~A~~~ 574 (703)
.. ++ +. +.+.+..|++.
T Consensus 211 ~~-Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 RK-PHAILVGEARDAETISAALEA 233 (358)
T ss_pred cC-CCEEeeeeeCCHHHHHHHHHH
Confidence 75 42 23 34455667777
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.47 E-value=4.2e-07 Score=98.57 Aligned_cols=122 Identities=22% Similarity=0.307 Sum_probs=79.9
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCCCC-CCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFYDP-DTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGN 562 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~ 562 (703)
.+++..+.|+||+||||||+++.|.+.+++ .+|+|..-..++.-. +.....++.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~--------------------- 173 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLIN--------------------- 173 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEE---------------------
Confidence 467999999999999999999999997764 467766543222100 000000110
Q ss_pred CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHH
Q 005314 563 ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALE 642 (703)
Q Consensus 563 ~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~ 642 (703)
+..+|..+.. -.=++++||-.+|+++++||++ |+++.....++
T Consensus 174 --------------------------q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a-- 216 (343)
T TIGR01420 174 --------------------------QREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA-- 216 (343)
T ss_pred --------------------------ccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH--
Confidence 1112221111 1234788999999999999997 88877654443
Q ss_pred HHcCCceEEEEccCchHHhhcCEEEE
Q 005314 643 RVMVGRTTVVIAHRLSTIRDADLIAV 668 (703)
Q Consensus 643 ~~~~~rT~IvIaHrlsti~~aD~I~v 668 (703)
...|.+++...|..+.....+|++-
T Consensus 217 -a~tGh~v~~T~Ha~~~~~~~~Rl~~ 241 (343)
T TIGR01420 217 -AETGHLVFGTLHTNSAAQTIERIID 241 (343)
T ss_pred -HHcCCcEEEEEcCCCHHHHHHHHHH
Confidence 4558999999999887766666643
No 472
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.47 E-value=1.7e-06 Score=83.17 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=62.9
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCEEE
Q 005314 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRD-ADLIAVVKNGVIA 675 (703)
Q Consensus 598 ~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~-aD~I~vl~~G~Iv 675 (703)
..|-|+-=-=-+.|.+ .+.-|+|||||-|+|-+.-.-.+...|..+.+ |.-+|+.||.+=.+.. --+|+-++.+-|
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~- 206 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI- 206 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc-
Confidence 4577877655566665 56689999999999999988888888887654 6778889999877644 457888887654
Q ss_pred EecChhHH
Q 005314 676 EKGKHETL 683 (703)
Q Consensus 676 e~Gth~eL 683 (703)
|+-++++.
T Consensus 207 ~~~~fe~t 214 (233)
T COG3910 207 EERDFEET 214 (233)
T ss_pred cccchHHH
Confidence 44455553
No 473
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.45 E-value=2.8e-07 Score=94.88 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=36.1
Q ss_pred HhccCCCEEEeeccCcC------CCHHHHHHHHHHHHHHc--CCceEEEEccCc
Q 005314 612 AMVKAPKILLLDEATSA------LDAESERVIQDALERVM--VGRTTVVIAHRL 657 (703)
Q Consensus 612 Allk~p~ILlLDEaTSa------LD~~se~~v~~~l~~~~--~~rT~IvIaHrl 657 (703)
+..++|+++|+| |+++ +|+..-..+.+.|.++. .++|+|+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 345799999999 7654 68888888888887754 378999999976
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.45 E-value=3.8e-07 Score=90.18 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=49.1
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEP 544 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~ 544 (703)
|+.++|+||||||||||+++|.+.+.| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888898888877777888999999984
No 475
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=2.3e-07 Score=101.19 Aligned_cols=63 Identities=30% Similarity=0.429 Sum_probs=57.0
Q ss_pred CCCChhHHHHHHHHHHhcc---------CCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh
Q 005314 597 IQLSGGQKQRVAIARAMVK---------APKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR 661 (703)
Q Consensus 597 ~~LSGGQkQRiaIARAllk---------~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~ 661 (703)
..+|.||+++++||.+|.. +|+|||||||+|.||+...+.+.+.|.+. +.++++++|.+..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4799999999999999999 99999999999999999999999999654 679999999987654
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.35 E-value=1.1e-07 Score=107.81 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=94.5
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhH--cCCCCCCCCeEEECCeeCCCCCHHHHhc---ceEEEccCCCCCcccHHHHHhc
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLL--QRFYDPDTGHITLDGVEIQKLQLKWLRQ---QMGLVSQEPVLFNDTVRVNIAY 557 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL--~g~y~p~~G~I~idG~di~~~~~~~lR~---~i~~V~Qe~~LF~gTIreNI~~ 557 (703)
=+++|..+.|.|++|||||||..-. .|.-++.+.-+.|... -+++++++ .+|+-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4889999999999999999998654 3444456677777652 23444443 34444333210 011111
Q ss_pred CCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH--HHhccCCCEEEeeccCcCCCHHHHH
Q 005314 558 GKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA--RAMVKAPKILLLDEATSALDAESER 635 (703)
Q Consensus 558 g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA--RAllk~p~ILlLDEaTSaLD~~se~ 635 (703)
- .. .........++..++.+++..+ ...+|+||+|||+|+ .++..+|+.+ ....+
T Consensus 88 ~-~~-~~~~~~~~~~~~~~l~~~l~~i-----------~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~ 144 (484)
T TIGR02655 88 L-DA-SPDPEGQDVVGGFDLSALIERI-----------NYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRR 144 (484)
T ss_pred E-ec-CchhccccccccCCHHHHHHHH-----------HHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHH
Confidence 1 00 0111111223334455555444 356889999999999 6776665544 35566
Q ss_pred HHHHHHHHHc-CCceEEEEccCchH--------H-h-hcCEEEEEe
Q 005314 636 VIQDALERVM-VGRTTVVIAHRLST--------I-R-DADLIAVVK 670 (703)
Q Consensus 636 ~v~~~l~~~~-~~rT~IvIaHrlst--------i-~-~aD~I~vl~ 670 (703)
.+.+.+..+. .++|+|+++|.... + . -||.|+.|+
T Consensus 145 ~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 145 EIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 6777666543 48999999998753 1 2 379999887
No 477
>PRK08149 ATP synthase SpaL; Validated
Probab=98.35 E-value=4e-07 Score=100.15 Aligned_cols=69 Identities=22% Similarity=0.360 Sum_probs=61.0
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCC---CeEEECCeeCCCCCHHHHh----cceEEEccC
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT---GHITLDGVEIQKLQLKWLR----QQMGLVSQE 543 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~---G~I~idG~di~~~~~~~lR----~~i~~V~Qe 543 (703)
..+++++ +++.+||+++|+|+||+|||||++.|.+.++++. |.|-.+|.++.++..+.++ +++++|...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 4689999 9999999999999999999999999999999998 9999999999888766665 567777554
No 478
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.30 E-value=5.4e-07 Score=88.26 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhc-ceEEEccCCCC-CcccHHHHHhc
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ-QMGLVSQEPVL-FNDTVRVNIAY 557 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~-~i~~V~Qe~~L-F~gTIreNI~~ 557 (703)
+|+.++|+|+|||||||+++.|.+++.| +.+||.++... ..+|+ ..++.+|+... ...+..+|+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999877 68999887432 23332 35566666432 33455555544
No 479
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.26 E-value=2.2e-06 Score=107.34 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=37.2
Q ss_pred ceeEEeeCCCEEEEEcCCCCChHHHHHhH-cCCCCCCCCeEEECC
Q 005314 479 DLCLAIPSGKMVALVGESGSGKSTVISLL-QRFYDPDTGHITLDG 522 (703)
Q Consensus 479 ~isl~I~~G~~vaiVG~SGsGKSTL~~lL-~g~y~p~~G~I~idG 522 (703)
=+++..+.++.++|+|++|+|||||++.+ .++.+..+|.+.+++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 35677888999999999999999999999 555566689999876
No 480
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.25 E-value=1e-06 Score=90.03 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=38.7
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhH-cCCCCCCCCeEEECCeeCCCCCHHHH---hcceEEEccC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLL-QRFYDPDTGHITLDGVEIQKLQLKWL---RQQMGLVSQE 543 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL-~g~y~p~~G~I~idG~di~~~~~~~l---R~~i~~V~Qe 543 (703)
-+++|+.+.|.|++||||||+...+ .....+.++.+.+.... +.+.+ .+.+++..|+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~----~~~~i~~~~~~~g~~~~~ 76 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE----SRESIIRQAAQFGMDFEK 76 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHhCCCHHH
Confidence 5899999999999999999998643 33445666677776522 22222 3456666554
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.24 E-value=7.2e-07 Score=87.45 Aligned_cols=77 Identities=27% Similarity=0.374 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCC------------CCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHH
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYD------------PDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVN 554 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreN 554 (703)
|++++|+||||||||||++.|++.++ |..|+ ++|++..-++.+.+.+.+ .++.+++..++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999863 34444 366666555666666553 57777877788888
Q ss_pred HhcCCCCCCCHHHHHHHHH
Q 005314 555 IAYGKEGNATEAEVLAAAE 573 (703)
Q Consensus 555 I~~g~~~~~t~~ei~~A~~ 573 (703)
.|| ...+.+.++++
T Consensus 76 -~y~----~~~~~i~~~~~ 89 (180)
T TIGR03263 76 -YYG----TPKSPVEEALA 89 (180)
T ss_pred -eeC----CcHHHHHHHHH
Confidence 466 33455655543
No 482
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.24 E-value=3.6e-06 Score=91.28 Aligned_cols=172 Identities=24% Similarity=0.371 Sum_probs=115.6
Q ss_pred EEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHc-CCCCCCCCeEEECCeeCCCCCHHHHhcceEEEcc
Q 005314 464 ITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ-RFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQ 542 (703)
Q Consensus 464 vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~-g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 542 (703)
|+|..|.+ -.+.+ +-|++| .+.|||..--|||||++.|. |-|+--.| ||++ .| +...
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE-----------~V-VT~~ 284 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE-----------FV-VTDP 284 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce-----------EE-EECC
Confidence 77888753 23444 468999 99999999999999998775 67764444 3422 11 1111
Q ss_pred CCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEe
Q 005314 543 EPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLL 622 (703)
Q Consensus 543 e~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlL 622 (703)
+.. .| .+.| -.....+++..||..||.|.||..-. -.+=||---|=-.|..||=..+++||+
T Consensus 285 ~av----ki----------rAED---GR~V~~vDISpFI~~LP~g~dT~~Fs-T~~ASGSTSqAAnI~EAlE~Ga~~LLi 346 (448)
T PF09818_consen 285 DAV----KI----------RAED---GRSVEGVDISPFINNLPGGKDTTCFS-TENASGSTSQAANIMEALEAGARLLLI 346 (448)
T ss_pred Cce----EE----------EecC---CceEeCccchHHHhhCCCCCCCCccc-ccCCCchHHHHHHHHHHHHcCCCEEEE
Confidence 110 00 0100 11234567899999999999998432 347799999999999999999999999
Q ss_pred eccCcCCC-----HHHHHHH----------HHHHHHH--cCCceEEEEccCc-hHHhhcCEEEEEeCCEEE
Q 005314 623 DEATSALD-----AESERVI----------QDALERV--MVGRTTVVIAHRL-STIRDADLIAVVKNGVIA 675 (703)
Q Consensus 623 DEaTSaLD-----~~se~~v----------~~~l~~~--~~~rT~IvIaHrl-sti~~aD~I~vl~~G~Iv 675 (703)
||=|||-. ..-.+.| .+.++.+ ..|-++|+|+=-. ..+.-||+|++|++=+..
T Consensus 347 DEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 347 DEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred cCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 99999963 3334444 2222222 1366666666444 467889999999987654
No 483
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.23 E-value=1.9e-06 Score=86.15 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=68.2
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCC--CHH
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNA--TEA 566 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~--t~~ 566 (703)
+++|+|++|||||||++.+.+.+.+..| +.+-..|........+.+..++++|+..+. +..+..+.. -.+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~ 74 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG-------VETGGCPHTAIRED 74 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh-------hhcCCCccceeccC
Confidence 6899999999999999999999888755 555556665555566666779999987652 111111111 011
Q ss_pred HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 567 EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 567 ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
-.. ....+.+++.++|++..+.|+-.|..+|.--
T Consensus 75 ~~~---~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 75 ASM---NLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHH---HHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 111 1233456667777777788888887666654
No 484
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.23 E-value=2.6e-05 Score=94.03 Aligned_cols=189 Identities=14% Similarity=0.163 Sum_probs=107.6
Q ss_pred ceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE-----EEccCCCCCc-----
Q 005314 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG-----LVSQEPVLFN----- 548 (703)
Q Consensus 479 ~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~-----~V~Qe~~LF~----- 548 (703)
-+||.+.++..++|+|+|||||||+++.|++.+....++|.+-+.+-. .+.+-+.+| +=+-.+.=||
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~~~---~~~~~~a~gG~y~~i~~~~~~~~NPf~l~ 514 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDRG---AEIFIRALNGVYTVIEPRLKCNFNPLQLD 514 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCCcC---HHHHHHhcCCEEEEecCCCCcccCCCCCC
Confidence 457788888999999999999999999999988888888887654332 111212221 1111222122
Q ss_pred ccHHHHHhc---------C-CCCCCCHH---HHHHHHHHh--------cHHHHHHHhhc----cc----cchh--cC---
Q 005314 549 DTVRVNIAY---------G-KEGNATEA---EVLAAAELA--------NAHQFISSLKQ----GY----DTIV--GE--- 594 (703)
Q Consensus 549 gTIreNI~~---------g-~~~~~t~~---ei~~A~~~a--------~l~~~I~~Lp~----G~----dT~v--Ge--- 594 (703)
+|- +|+.+ . .....+++ .|.+|++.+ .+.++...|+. ++ ..++ |.
T Consensus 515 ~~~-~~~~~l~~~l~~l~~~~~~~lt~~~~~~I~~av~~~~~~~~~~rtl~~l~~~l~~~~~~~L~~~L~~~~~~G~~g~ 593 (800)
T PRK13898 515 DTS-ENRTFLMEWLKVLVTSNGESLTAQDIKRINDAVEGNFKLKKEDRRLSNLVAFLGIDGPNTLAGRIAMWHGKGSHAA 593 (800)
T ss_pred CCh-HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhCChhhCcHHHHHHHhCcCCchHHHHHHHHHhcCCCcEE
Confidence 221 23211 0 01123332 344554332 23444444421 11 1111 11
Q ss_pred ---C---CCC-------------CCh-hHHHHHH-------HHHHhccCCCEEEeeccCcCCC-HHHHHHHHHHHHHHc-
Q 005314 595 ---R---GIQ-------------LSG-GQKQRVA-------IARAMVKAPKILLLDEATSALD-AESERVIQDALERVM- 645 (703)
Q Consensus 595 ---~---G~~-------------LSG-GQkQRia-------IARAllk~p~ILlLDEaTSaLD-~~se~~v~~~l~~~~- 645 (703)
+ ..+ |.. .....+. |.+.+-.+|.++++|||...|| +...+.+.+.++..+
T Consensus 594 ~Fd~~~d~l~~~~~~~~~fdl~~l~~~~~~~~~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK 673 (800)
T PRK13898 594 IFDNEEDLLDFQKARVFGFEMGELLKDPVSLAPVLLYLFHRISISLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK 673 (800)
T ss_pred eecCCccccCCCCCcEEEEEchhhcCChhhHHHHHHHHHHHHHHHhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH
Confidence 0 011 111 1211121 1234567899999999999999 778888888887764
Q ss_pred CCceEEEEccCchH----------HhhcCEEEEEeC
Q 005314 646 VGRTTVVIAHRLST----------IRDADLIAVVKN 671 (703)
Q Consensus 646 ~~rT~IvIaHrlst----------i~~aD~I~vl~~ 671 (703)
.+..++++||.++. +.+|+.-+.|-|
T Consensus 674 ~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 674 LNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred cCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 47889999999866 456776566655
No 485
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.22 E-value=1.8e-06 Score=108.65 Aligned_cols=62 Identities=27% Similarity=0.329 Sum_probs=55.5
Q ss_pred CCCCCChhHHHHHH----HHHH--------hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q 005314 595 RGIQLSGGQKQRVA----IARA--------MVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLS 658 (703)
Q Consensus 595 ~G~~LSGGQkQRia----IARA--------llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrls 658 (703)
+...||||||||++ +|+| +..+|+++||||||++||+.+...+++.|.++ +.++|+++|++-
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 45789999999996 6766 55799999999999999999999999999887 789999999984
No 486
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.21 E-value=0.012 Score=61.60 Aligned_cols=239 Identities=13% Similarity=0.060 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHH
Q 005314 181 LMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLH 260 (703)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~ 260 (703)
..|+.++++..++..+..++....-.|.+..+.+-.+++=-+. . +.---.+|+..|+.+....+......+
T Consensus 60 ~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~--r-------~IEGASQRIQEDtmrfa~i~E~Lgv~~ 130 (315)
T PF05992_consen 60 LNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKL--R-------HIEGASQRIQEDTMRFAKIMEDLGVSF 130 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--c-------cCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555556666666666778888888777765444 1 122235799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 005314 261 VQNIATLFAGVIIAFEANWQL-----------ALIV--LVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGS 327 (703)
Q Consensus 261 ~~~~~~~i~~~i~~~~~~~~l-----------alv~--l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 327 (703)
+.++++++..+-+++.++-.+ .++. ++...+-.+...+.+.++.+..-+.++..+...+.+ +-|
T Consensus 131 i~simtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeL---V~g 207 (315)
T PF05992_consen 131 IRSIMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKEL---VYG 207 (315)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHH---Hhc
Confidence 999999888877766443211 2222 222222222334556666655555555444444422 111
Q ss_pred HHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005314 328 IRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSM 407 (703)
Q Consensus 328 i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~ 407 (703)
=.. ......+...+.|.+....+.+................|+.... .+.+-+.-+..|.+|+|.+..+..++..
T Consensus 208 ED~-~~ra~~~tl~eLF~~Vr~Ny~rly~hy~yfni~~~~y~q~~~i~----~~i~l~Psi~ag~iTLG~~~Qi~~aF~~ 282 (315)
T PF05992_consen 208 EDD-ANRAQPPTLRELFSNVRRNYFRLYFHYMYFNIARISYLQFDVIF----PYIILIPSIVAGAITLGVLQQISNAFGQ 282 (315)
T ss_pred Ccc-cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 111 11223344566666666666665555555544444444443332 2333345567899999999999989988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005314 408 AATGLSQSGILAPEASRAKSAIASVYAIL 436 (703)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~i~~il 436 (703)
...++.-+...++.+..-....+|+.++-
T Consensus 283 V~~sfq~lv~~W~tivEL~Si~kRL~~FE 311 (315)
T PF05992_consen 283 VRSSFQYLVNSWTTIVELRSIYKRLRAFE 311 (315)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999988763
No 487
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.18 E-value=1.6e-06 Score=86.56 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=62.5
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHH-----HHhcCCCCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRV-----NIAYGKEGNA 563 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIre-----NI~~g~~~~~ 563 (703)
.++|+|+|||||||+++.|.+.+ ..|.+.+ +++|.+...-+.++ +..++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v-------------------~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVI-------------------ISQDSYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEE-------------------EEecccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999987 3344433 33333222111111 1122211112
Q ss_pred CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCH
Q 005314 564 TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDA 631 (703)
Q Consensus 564 t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~ 631 (703)
+.+.+.+ .+..+-.|- .+--...+.|.|++++-.+ .+.+|+++|+|++.+..++
T Consensus 60 ~~~~~~~---------~l~~l~~~~--~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 DFDLLIS---------HLQDLKNGK--SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cHHHHHH---------HHHHHHCCC--CEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 2222222 233332221 2233345778888776555 5788999999999999876
No 488
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.18 E-value=1e-05 Score=90.04 Aligned_cols=174 Identities=21% Similarity=0.281 Sum_probs=108.0
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH---HHH-----hcceEEEccCCC
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL---KWL-----RQQMGLVSQEPV 545 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~---~~l-----R~~i~~V~Qe~~ 545 (703)
..+++++ |+|.+||+++|+|+||+|||||++.|.|..+|+.|.+...|..-+++.. +.+ ++-+.++.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~--- 226 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT--- 226 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC---
Confidence 5689999 9999999999999999999999999999999999887776554443321 111 111111111
Q ss_pred CCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhc-CCCCCCChhHHHHHHHHHHhccCCCEEEeec
Q 005314 546 LFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVG-ERGIQLSGGQKQRVAIARAMVKAPKILLLDE 624 (703)
Q Consensus 546 LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG-e~G~~LSGGQkQRiaIARAllk~p~ILlLDE 624 (703)
.++..-+++..+--..-..++.. .+|+|-.+= +.-+.+ -|.|| -|+ +.+.|
T Consensus 227 --------------~d~~p~~r~~~~~~a~t~AE~fr--d~G~~Vll~~DslTr~--A~A~R-Eis---------l~~ge 278 (440)
T TIGR01026 227 --------------SDQSPLLRLKGAYVATAIAEYFR--DQGKDVLLLMDSVTRF--AMAQR-EIG---------LAAGE 278 (440)
T ss_pred --------------CCCCHHHHHHHHHHHHHHHHHHH--HCCCCEEEEEeChHHH--HHHHH-HHH---------HhcCC
Confidence 11122233333222222334444 347665432 221111 11122 011 23455
Q ss_pred c--CcCCCHHHHHHHHHHHHHHcC-Cc-------eEEEEccCchHHhhcCEEEEEeCCEEEEecCh
Q 005314 625 A--TSALDAESERVIQDALERVMV-GR-------TTVVIAHRLSTIRDADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 625 a--TSaLD~~se~~v~~~l~~~~~-~r-------T~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth 680 (703)
| +.++|+..-..+.+-+++... ++ |+++-+|+++ =.-+|.+.-+-||+|+-.++-
T Consensus 279 ~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~l 343 (440)
T TIGR01026 279 PPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRAL 343 (440)
T ss_pred CCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecch
Confidence 4 568999988888888877543 46 7777899983 456899999999999875543
No 489
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.17 E-value=4.2e-06 Score=102.27 Aligned_cols=76 Identities=29% Similarity=0.429 Sum_probs=66.7
Q ss_pred CCCChhHHHH------HHHHHHhccC--CCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEE
Q 005314 597 IQLSGGQKQR------VAIARAMVKA--PKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRDADLIA 667 (703)
Q Consensus 597 ~~LSGGQkQR------iaIARAllk~--p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~aD~I~ 667 (703)
..|||||+=. +|||..+-.+ -+.|+|||||..||+++-..+.++|.++.. ++++|||||.-.....+|.++
T Consensus 814 ~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~i 893 (908)
T COG0419 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRI 893 (908)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeEE
Confidence 5899999975 4555666677 699999999999999999999999998765 699999999999999999999
Q ss_pred EEeCC
Q 005314 668 VVKNG 672 (703)
Q Consensus 668 vl~~G 672 (703)
.++..
T Consensus 894 ~V~k~ 898 (908)
T COG0419 894 RVKKD 898 (908)
T ss_pred EEEec
Confidence 99753
No 490
>PLN02796 D-glycerate 3-kinase
Probab=98.16 E-value=7e-07 Score=95.16 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=54.4
Q ss_pred cccccceeEEe---eCCCE-----EEEEcCCCCChHHHHHhHcCCCCCC---CCeEEECCeeCCCCCHHHHhc
Q 005314 474 VQIFRDLCLAI---PSGKM-----VALVGESGSGKSTVISLLQRFYDPD---TGHITLDGVEIQKLQLKWLRQ 535 (703)
Q Consensus 474 ~~vL~~isl~I---~~G~~-----vaiVG~SGsGKSTL~~lL~g~y~p~---~G~I~idG~di~~~~~~~lR~ 535 (703)
..+++++++.+ ++|+. +||+|+||||||||++.|.+++.+. .|.|.+||..+...+.+.+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 36889999998 67887 9999999999999999999999875 688999999988777777776
No 491
>PRK15494 era GTPase Era; Provisional
Probab=98.15 E-value=1.3e-06 Score=94.54 Aligned_cols=57 Identities=30% Similarity=0.348 Sum_probs=51.2
Q ss_pred cCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCC-------EEEEEcCCCCChHHHHHhHcCCC
Q 005314 453 ENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGK-------MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 453 ~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~-------~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+.+.|.+++++|+|+||. ..++++.++|++++|+ +++|||++|+|||||++.|.|-.
T Consensus 13 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 13 EEFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 456799999999999993 4579999999999999 99999999999999999987753
No 492
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.15 E-value=3.3e-06 Score=82.81 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=47.1
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE-----------CCeeCCCCCHHHHh-----cceEEEccCCCCCcc
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYDPDTGHITL-----------DGVEIQKLQLKWLR-----QQMGLVSQEPVLFND 549 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i-----------dG~di~~~~~~~lR-----~~i~~V~Qe~~LF~g 549 (703)
|+.++|+|+|||||||+++.|++.+.+. |.+.+ +|.+...++.+.+. +.++.+.|.+.++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 55544 77777777766653 358888887654443
No 493
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.14 E-value=1.3e-05 Score=74.18 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=40.1
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc------CCceEEEEccCch
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM------VGRTTVVIAHRLS 658 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~------~~rT~IvIaHrls 658 (703)
++.....++...++.++++||+-.. +......+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 6667777888889999999998875 5556667777776653 4567778877544
No 494
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.14 E-value=1.2e-06 Score=82.23 Aligned_cols=74 Identities=30% Similarity=0.441 Sum_probs=56.7
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCC-------------CCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHH
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDP-------------DTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNI 555 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p-------------~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI 555 (703)
.++|+||||||||||++.|++.+++ ..|+ ++|++..-++...+++. +.|+.++..++...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~- 74 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN- 74 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-
Confidence 3789999999999999999999754 4455 58888888888888774 567888888898888
Q ss_pred hcCCCCCCCHHHHHHHH
Q 005314 556 AYGKEGNATEAEVLAAA 572 (703)
Q Consensus 556 ~~g~~~~~t~~ei~~A~ 572 (703)
.|| . ..+++.++.
T Consensus 75 ~yg-~---~~~~i~~~~ 87 (137)
T cd00071 75 YYG-T---SKAAVEEAL 87 (137)
T ss_pred Eec-C---cHHHHHHHH
Confidence 577 2 244555443
No 495
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.13 E-value=2.2e-06 Score=94.73 Aligned_cols=84 Identities=18% Similarity=0.330 Sum_probs=64.2
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-CCCeEEE---CCeeCCCCCHHHHh---cceEEE-----c
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-DTGHITL---DGVEIQKLQLKWLR---QQMGLV-----S 541 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-~~G~I~i---dG~di~~~~~~~lR---~~i~~V-----~ 541 (703)
..+++++ |+|.+||+++|+|+||||||||++.|+|..++ ..|.|.+ +|.++.++..+.++ .+.++| +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3568887 99999999999999999999999999998844 4466666 56888777666555 345566 9
Q ss_pred cCCC------CCcccHHHHHhcC
Q 005314 542 QEPV------LFNDTVRVNIAYG 558 (703)
Q Consensus 542 Qe~~------LF~gTIreNI~~g 558 (703)
|+|. ....+|.|.++.-
T Consensus 231 q~p~~rlnp~~va~~IAE~~r~~ 253 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFRDQ 253 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHc
Confidence 9773 2345788888643
No 496
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.07 E-value=1.9e-06 Score=86.66 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=35.7
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCc
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN 548 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~ 548 (703)
++|+.++|+|+||||||||++.|.+++.+ ..+++++||.+++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---------------------~~~~~i~~D~~~~~ 46 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK---------------------LEIVIISQDNYYKD 46 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc---------------------cCCeEecccccccC
Confidence 68999999999999999999999998753 25667777776654
No 497
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.05 E-value=9.3e-06 Score=94.55 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCCCCC--------CeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYDPDT--------GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYG 558 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~p~~--------G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g 558 (703)
.+.+.|+||+|+||||+++++.++..+.. +-|.+||.++. .+...+ .|-.+|
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhcC
Confidence 45699999999999999999999886544 44888887663 232222 122333
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHH
Q 005314 559 KEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQ 638 (703)
Q Consensus 559 ~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~ 638 (703)
...+...+...+.++..++. ......-.++||| +|+||| +..||......+.
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~-----------~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVP-----------EPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLL 286 (615)
T ss_pred CccHHHHHHHHHHHHHcCCC-----------chhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence 11000001111222222221 1111223467777 999999 7999999988888
Q ss_pred HHHHH
Q 005314 639 DALER 643 (703)
Q Consensus 639 ~~l~~ 643 (703)
+.|++
T Consensus 287 ~~Le~ 291 (615)
T TIGR02903 287 KVLED 291 (615)
T ss_pred HHHhh
Confidence 88864
No 498
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.04 E-value=6e-06 Score=71.54 Aligned_cols=50 Identities=40% Similarity=0.492 Sum_probs=37.3
Q ss_pred CCCCCCChhHHHH-------HHHHHHhcc------CCCEEEeeccCcCCCHHHHHHHHHHHHH
Q 005314 594 ERGIQLSGGQKQR-------VAIARAMVK------APKILLLDEATSALDAESERVIQDALER 643 (703)
Q Consensus 594 e~G~~LSGGQkQR-------iaIARAllk------~p~ILlLDEaTSaLD~~se~~v~~~l~~ 643 (703)
..-.++||||||. +|+|-.+-. .|++++||||++.||+++-+.+.+.|++
T Consensus 28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3446899999964 334444434 2699999999999999999999988763
No 499
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.03 E-value=3.4e-06 Score=84.31 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=42.7
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCC-CCCeEEECCeeCCCCCHHHHhcceEEEccCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDP-DTGHITLDGVEIQKLQLKWLRQQMGLVSQEP 544 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~ 544 (703)
++|++++|+|.||||||||+++|.+.+.+ ..|.+.+||.++.. .+...++|++|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 67889999999999999999999996654 45789999977652 2333456655553
No 500
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=98.02 E-value=3.9e-05 Score=81.67 Aligned_cols=157 Identities=24% Similarity=0.315 Sum_probs=107.2
Q ss_pred EEeeCCCEEEEEcCCCCChHHHHHhHcCC-CC--CCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcC
Q 005314 482 LAIPSGKMVALVGESGSGKSTVISLLQRF-YD--PDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYG 558 (703)
Q Consensus 482 l~I~~G~~vaiVG~SGsGKSTL~~lL~g~-y~--p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g 558 (703)
+-|+.| .++|+|++--|||||+..|.+= ++ |-+|+=++ |++.. .+++. .||
T Consensus 238 mgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipGDGRE~v----VTd~~-------lakae----------ae~---- 291 (554)
T COG3044 238 MGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPGDGRERV----VTDVK-------LAKAE----------AEE---- 291 (554)
T ss_pred cCCCcc-eEEEecCCccchhHHHHHHHhcccccCCCCCceEE----Eehhh-------hhhhh----------ccc----
Confidence 468899 9999999999999999988753 32 22232211 00000 00000 011
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCH-------
Q 005314 559 KEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDA------- 631 (703)
Q Consensus 559 ~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~------- 631 (703)
.+.. .-.++.-||+.||.|-||+.--.| .=||-.+|=-.|=||+=...++|++||=|||..-
T Consensus 292 ---------gr~v-sg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVla 360 (554)
T COG3044 292 ---------GRCV-SGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLA 360 (554)
T ss_pred ---------ceee-eccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHH
Confidence 1111 123478899999999999987776 4699999999999999999999999999999753
Q ss_pred ---HHHHHHHHHHH---HHcCC-ceEEEEccCchH-HhhcCEEEEEeCCEEE
Q 005314 632 ---ESERVIQDALE---RVMVG-RTTVVIAHRLST-IRDADLIAVVKNGVIA 675 (703)
Q Consensus 632 ---~se~~v~~~l~---~~~~~-rT~IvIaHrlst-i~~aD~I~vl~~G~Iv 675 (703)
+.++.+-...+ .+..+ -++|+||--+.- +.-+||++||++-+-.
T Consensus 361 ke~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 361 KESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred HHhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 22333333333 33332 688888887764 5779999999998766
Done!