Query 005314
Match_columns 703
No_of_seqs 245 out of 2729
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 21:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2E-112 8E-117 1056.5 57.7 580 119-700 736-1318(1321)
2 4f4c_A Multidrug resistance pr 100.0 2E-108 6E-113 1022.1 73.4 578 118-699 57-654 (1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 1.8E-98 6E-103 864.6 70.2 570 123-700 11-580 (587)
4 3qf4_B Uncharacterized ABC tra 100.0 3.8E-98 1E-102 864.1 66.3 571 120-700 22-592 (598)
5 4a82_A Cystic fibrosis transme 100.0 7.6E-98 3E-102 858.8 65.9 571 123-699 2-577 (578)
6 3b5x_A Lipid A export ATP-bind 100.0 2.2E-95 7E-100 839.4 76.2 570 121-699 11-580 (582)
7 2yl4_A ATP-binding cassette SU 100.0 1.9E-95 6E-100 842.1 72.8 577 121-700 5-585 (595)
8 3b60_A Lipid A export ATP-bind 100.0 4.1E-95 1.4E-99 837.1 71.9 570 121-699 11-580 (582)
9 3g5u_A MCG1178, multidrug resi 100.0 8E-97 3E-101 915.3 58.8 576 120-699 32-626 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 1.5E-96 5E-101 912.8 58.1 580 121-701 691-1273(1284)
11 3nh6_A ATP-binding cassette SU 100.0 1.3E-71 4.4E-76 587.7 27.9 279 417-700 13-291 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.3E-59 4.3E-64 483.8 30.8 240 457-698 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 1.1E-58 3.9E-63 480.3 29.3 242 457-701 16-257 (260)
14 2ixe_A Antigen peptide transpo 100.0 6.3E-58 2.1E-62 477.3 28.9 242 456-699 14-258 (271)
15 1mv5_A LMRA, multidrug resista 100.0 1.2E-58 4.2E-63 475.7 19.7 239 459-700 2-240 (243)
16 3gd7_A Fusion complex of cysti 100.0 2.8E-55 9.6E-60 477.1 26.9 234 456-693 17-250 (390)
17 2cbz_A Multidrug resistance-as 100.0 2E-54 6.8E-59 442.5 23.9 226 458-700 3-231 (237)
18 2pze_A Cystic fibrosis transme 100.0 7.1E-54 2.4E-58 436.3 25.2 222 457-695 5-227 (229)
19 1ji0_A ABC transporter; ATP bi 100.0 8.9E-51 3E-55 416.4 27.1 219 458-685 6-228 (240)
20 3gfo_A Cobalt import ATP-bindi 100.0 4.6E-51 1.6E-55 425.4 24.6 216 458-686 7-234 (275)
21 3tui_C Methionine import ATP-b 100.0 9.6E-51 3.3E-55 435.7 27.5 227 457-694 23-262 (366)
22 3tif_A Uncharacterized ABC tra 100.0 2E-51 7E-56 419.7 20.7 215 459-684 2-233 (235)
23 4g1u_C Hemin import ATP-bindin 100.0 3.9E-50 1.3E-54 417.2 22.5 214 458-685 11-237 (266)
24 2olj_A Amino acid ABC transpor 100.0 1.8E-49 6E-54 411.2 27.3 221 458-692 24-255 (263)
25 2bbs_A Cystic fibrosis transme 100.0 3.7E-50 1.3E-54 421.8 22.4 218 456-695 38-256 (290)
26 3fvq_A Fe(3+) IONS import ATP- 100.0 5E-50 1.7E-54 430.0 21.4 224 458-695 4-238 (359)
27 1b0u_A Histidine permease; ABC 100.0 1.2E-49 4.3E-54 412.9 23.5 221 458-691 6-248 (262)
28 2yz2_A Putative ABC transporte 100.0 1.9E-49 6.6E-54 412.5 22.9 214 459-686 3-228 (266)
29 1vpl_A ABC transporter, ATP-bi 100.0 1.7E-49 5.7E-54 410.0 22.2 214 457-685 14-235 (256)
30 3rlf_A Maltose/maltodextrin im 100.0 1.2E-49 4.3E-54 429.7 21.8 222 458-695 3-233 (381)
31 2pcj_A ABC transporter, lipopr 100.0 1.1E-49 3.6E-54 404.1 19.5 209 458-680 4-223 (224)
32 1g6h_A High-affinity branched- 100.0 4.7E-49 1.6E-53 407.7 23.7 215 458-682 7-239 (257)
33 2yyz_A Sugar ABC transporter, 100.0 1.1E-48 3.6E-53 421.0 24.2 219 458-692 3-230 (359)
34 2it1_A 362AA long hypothetical 100.0 6.7E-49 2.3E-53 423.0 21.9 219 458-692 3-230 (362)
35 2ihy_A ABC transporter, ATP-bi 100.0 7.6E-49 2.6E-53 410.1 20.7 215 458-686 21-253 (279)
36 2qi9_C Vitamin B12 import ATP- 100.0 2.5E-48 8.5E-53 399.6 24.1 209 458-685 4-222 (249)
37 1z47_A CYSA, putative ABC-tran 100.0 1.2E-48 4E-53 419.7 22.2 220 457-691 13-241 (355)
38 1v43_A Sugar-binding transport 100.0 2.1E-48 7.2E-53 420.6 23.2 219 458-692 11-238 (372)
39 2onk_A Molybdate/tungstate ABC 100.0 9.6E-49 3.3E-53 400.7 19.2 209 459-686 2-217 (240)
40 3d31_A Sulfate/molybdate ABC t 100.0 1.4E-48 4.9E-53 418.7 21.2 216 459-691 2-223 (348)
41 1oxx_K GLCV, glucose, ABC tran 100.0 8.9E-49 3.1E-53 421.7 19.5 221 458-692 3-237 (353)
42 2zu0_C Probable ATP-dependent 100.0 6.8E-48 2.3E-52 400.9 22.1 218 458-685 20-254 (267)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 1.3E-47 4.3E-52 395.4 23.6 215 458-682 3-230 (250)
44 1g29_1 MALK, maltose transport 100.0 4.2E-48 1.4E-52 419.0 20.9 219 458-692 3-236 (372)
45 2pjz_A Hypothetical protein ST 100.0 3.1E-47 1.1E-51 394.3 19.5 208 459-685 2-215 (263)
46 2nq2_C Hypothetical ABC transp 100.0 5.9E-47 2E-51 390.6 19.2 209 458-695 4-225 (253)
47 1sgw_A Putative ABC transporte 100.0 3.1E-46 1.1E-50 375.2 14.7 198 457-675 9-211 (214)
48 2v9p_A Replication protein E1; 100.0 1.9E-44 6.6E-49 379.2 -16.0 239 389-699 36-276 (305)
49 3bk7_A ABC transporter ATP-bin 100.0 6.8E-37 2.3E-41 351.3 13.9 200 458-685 357-563 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.7E-36 5.9E-41 343.6 16.1 200 458-684 269-476 (538)
51 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-36 4.6E-41 345.4 15.2 200 458-685 287-493 (538)
52 2iw3_A Elongation factor 3A; a 100.0 3.5E-36 1.2E-40 356.5 16.6 206 458-679 671-981 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-35 7.1E-40 345.4 11.8 201 474-686 335-641 (670)
54 2iw3_A Elongation factor 3A; a 100.0 6.7E-34 2.3E-38 337.0 24.6 197 457-685 434-635 (986)
55 3ux8_A Excinuclease ABC, A sub 100.0 5.7E-35 2E-39 341.7 15.2 213 473-694 30-307 (670)
56 3bk7_A ABC transporter ATP-bin 100.0 6.5E-35 2.2E-39 334.9 14.9 197 458-672 83-304 (607)
57 3j16_B RLI1P; ribosome recycli 100.0 7.1E-35 2.4E-39 334.0 14.0 199 462-686 350-560 (608)
58 3pih_A Uvrabc system protein A 100.0 2.2E-34 7.6E-39 341.0 18.5 219 457-695 588-911 (916)
59 1yqt_A RNAse L inhibitor; ATP- 100.0 9.5E-35 3.2E-39 330.1 13.6 196 459-672 21-234 (538)
60 3j16_B RLI1P; ribosome recycli 100.0 1.8E-32 6.2E-37 314.0 15.7 196 463-674 82-299 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 1.4E-32 4.8E-37 311.6 13.4 192 463-673 4-214 (538)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1.4E-31 4.7E-36 314.7 16.9 211 457-686 501-828 (842)
63 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.7E-35 9.1E-40 327.6 -14.6 192 458-685 118-338 (460)
64 4aby_A DNA repair protein RECN 100.0 1.4E-31 4.7E-36 295.8 15.0 201 475-677 49-380 (415)
65 2r6f_A Excinuclease ABC subuni 100.0 8.2E-31 2.8E-35 308.2 18.0 215 458-693 629-949 (972)
66 2ygr_A Uvrabc system protein A 100.0 1.9E-30 6.5E-35 306.2 18.4 218 457-695 646-969 (993)
67 1e69_A Chromosome segregation 100.0 2E-29 6.8E-34 269.3 14.9 202 479-682 17-310 (322)
68 3b85_A Phosphate starvation-in 99.9 3.1E-30 1E-34 257.9 -5.9 159 474-674 13-172 (208)
69 1z6g_A Guanylate kinase; struc 99.9 1.1E-30 3.8E-35 263.5 -11.6 166 475-671 11-193 (218)
70 4gp7_A Metallophosphoesterase; 99.9 2.1E-27 7.3E-32 230.2 4.9 150 479-667 1-169 (171)
71 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.8E-28 6E-33 262.3 -4.7 141 461-674 151-292 (330)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.7E-25 5.7E-30 242.7 17.8 83 594-676 275-364 (365)
73 1ye8_A Protein THEP1, hypothet 99.9 1.1E-27 3.9E-32 233.6 -2.2 154 489-683 2-168 (178)
74 2dpy_A FLII, flagellum-specifi 99.9 3.3E-28 1.1E-32 269.1 -12.3 195 457-685 130-344 (438)
75 1tq4_A IIGP1, interferon-induc 99.9 1.1E-26 3.8E-31 254.0 -7.9 168 474-667 36-248 (413)
76 2eyu_A Twitching motility prot 99.9 1.9E-27 6.4E-32 246.1 -15.1 175 475-659 15-242 (261)
77 2vf7_A UVRA2, excinuclease ABC 99.9 2E-23 6.9E-28 245.5 14.5 106 587-692 367-482 (842)
78 2ewv_A Twitching motility prot 99.9 1.7E-26 5.6E-31 251.0 -11.1 175 475-659 126-353 (372)
79 3aez_A Pantothenate kinase; tr 99.9 4.6E-26 1.6E-30 241.5 -8.9 181 454-672 39-245 (312)
80 2f1r_A Molybdopterin-guanine d 99.9 5.8E-26 2E-30 219.7 -8.9 111 488-620 3-125 (171)
81 3b9q_A Chloroplast SRP recepto 99.9 1.9E-24 6.6E-29 228.0 0.3 176 477-675 90-285 (302)
82 3sop_A Neuronal-specific septi 99.9 9.8E-25 3.3E-29 226.8 -3.7 148 489-661 4-154 (270)
83 2o5v_A DNA replication and rep 99.9 2.2E-22 7.4E-27 216.7 13.1 82 598-684 265-355 (359)
84 1lvg_A Guanylate kinase, GMP k 99.9 8E-26 2.7E-30 224.4 -14.1 169 484-685 1-183 (198)
85 2og2_A Putative signal recogni 99.9 1.7E-23 5.9E-28 224.9 0.8 175 478-675 148-342 (359)
86 1znw_A Guanylate kinase, GMP k 99.9 3.3E-24 1.1E-28 214.1 -7.7 169 474-670 9-202 (207)
87 2i3b_A HCR-ntpase, human cance 99.8 8.4E-24 2.9E-28 208.0 -7.5 159 487-678 1-169 (189)
88 2gza_A Type IV secretion syste 99.8 1.4E-25 4.7E-30 243.0 -23.7 224 380-612 51-301 (361)
89 2obl_A ESCN; ATPase, hydrolase 99.8 2.1E-22 7.3E-27 216.2 -1.1 194 458-684 45-254 (347)
90 3pih_A Uvrabc system protein A 99.8 2.9E-21 9.9E-26 229.0 8.3 171 502-688 383-563 (916)
91 3asz_A Uridine kinase; cytidin 99.8 3.3E-23 1.1E-27 207.0 -10.8 145 484-657 3-161 (211)
92 1lw7_A Transcriptional regulat 99.8 1.5E-22 5E-27 219.9 -6.7 148 476-626 157-329 (365)
93 4ad8_A DNA repair protein RECN 99.8 3.6E-20 1.2E-24 210.1 11.6 76 597-672 395-473 (517)
94 1cr0_A DNA primase/helicase; R 99.8 1.9E-20 6.5E-25 197.1 8.3 181 475-674 23-237 (296)
95 1tf7_A KAIC; homohexamer, hexa 99.8 4.9E-22 1.7E-26 225.9 -4.6 172 467-672 20-210 (525)
96 3qkt_A DNA double-strand break 99.8 1E-18 3.5E-23 187.6 17.5 75 596-670 246-327 (339)
97 2r6f_A Excinuclease ABC subuni 99.8 1.1E-19 3.8E-24 214.0 10.3 153 511-686 432-601 (972)
98 2o8b_B DNA mismatch repair pro 99.8 1.6E-19 5.4E-24 217.7 10.4 170 457-680 749-937 (1022)
99 2jeo_A Uridine-cytidine kinase 99.8 8.4E-21 2.9E-25 194.5 -1.3 168 473-685 11-187 (245)
100 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 8E-19 2.7E-23 165.3 10.3 88 587-674 41-142 (148)
101 1pzn_A RAD51, DNA repair and r 99.8 2.2E-20 7.5E-25 201.2 -0.6 167 475-684 118-314 (349)
102 1ewq_A DNA mismatch repair pro 99.8 2E-19 6.9E-24 210.7 7.0 147 456-663 548-704 (765)
103 2ygr_A Uvrabc system protein A 99.8 2.8E-18 9.6E-23 202.9 16.4 141 545-690 465-622 (993)
104 1w1w_A Structural maintenance 99.8 1.6E-18 5.6E-23 192.1 13.5 73 598-670 333-410 (430)
105 1tf7_A KAIC; homohexamer, hexa 99.8 4.6E-19 1.6E-23 201.4 9.3 152 481-673 275-444 (525)
106 4a74_A DNA repair and recombin 99.7 2.4E-19 8.1E-24 180.7 3.8 147 483-672 21-200 (231)
107 3szr_A Interferon-induced GTP- 99.7 1.3E-20 4.5E-25 217.1 -7.0 190 458-684 10-236 (608)
108 1odf_A YGR205W, hypothetical 3 99.7 1.4E-20 4.8E-25 197.3 -7.1 131 485-633 29-169 (290)
109 1pui_A ENGB, probable GTP-bind 99.7 6.7E-20 2.3E-24 182.1 -2.0 168 459-645 4-197 (210)
110 2ehv_A Hypothetical protein PH 99.7 1.2E-19 4.2E-24 185.2 -0.7 182 458-671 6-207 (251)
111 3thx_A DNA mismatch repair pro 99.7 9.3E-18 3.2E-22 200.0 13.9 167 457-683 630-811 (934)
112 3jvv_A Twitching mobility prot 99.7 7.8E-19 2.7E-23 189.0 3.9 147 462-672 92-246 (356)
113 1rj9_A FTSY, signal recognitio 99.7 3.2E-18 1.1E-22 180.5 7.7 148 485-660 100-261 (304)
114 2qag_C Septin-7; cell cycle, c 99.7 3.4E-19 1.2E-23 195.4 -1.3 166 457-660 10-180 (418)
115 3kta_B Chromosome segregation 99.7 1.9E-17 6.5E-22 160.0 11.0 79 596-674 62-146 (173)
116 2qnr_A Septin-2, protein NEDD5 99.7 8.7E-19 3E-23 185.0 -1.9 163 462-659 2-169 (301)
117 3c8u_A Fructokinase; YP_612366 99.7 8.7E-20 3E-24 182.1 -12.3 119 484-626 19-140 (208)
118 2w0m_A SSO2452; RECA, SSPF, un 99.6 6.2E-17 2.1E-21 162.9 4.9 165 474-672 9-192 (235)
119 1s96_A Guanylate kinase, GMP k 99.6 1.1E-17 3.8E-22 168.2 -0.8 142 483-686 12-161 (219)
120 1nij_A Hypothetical protein YJ 99.6 7.1E-18 2.4E-22 179.4 -4.8 143 488-658 5-190 (318)
121 1zp6_A Hypothetical protein AT 99.6 5.2E-18 1.8E-22 166.2 -6.2 161 483-666 5-169 (191)
122 2cvh_A DNA repair and recombin 99.6 6.4E-16 2.2E-20 154.4 8.3 152 474-672 6-185 (220)
123 3thx_B DNA mismatch repair pro 99.6 7.7E-16 2.6E-20 183.0 8.8 158 457-666 639-805 (918)
124 2qag_B Septin-6, protein NEDD5 99.6 1.7E-16 6E-21 173.2 3.0 179 458-655 16-217 (427)
125 1nlf_A Regulatory protein REPA 99.6 1.6E-15 5.5E-20 158.1 9.9 151 483-660 26-184 (279)
126 1wb9_A DNA mismatch repair pro 99.6 2.9E-16 9.9E-21 185.0 2.9 165 457-676 576-749 (800)
127 1n0w_A DNA repair protein RAD5 99.5 8.6E-15 2.9E-19 148.5 7.9 148 483-672 20-209 (243)
128 2yhs_A FTSY, cell division pro 99.5 1.2E-15 4E-20 168.7 0.6 149 478-655 284-447 (503)
129 2qm8_A GTPase/ATPase; G protei 99.5 4.3E-17 1.5E-21 174.6 -11.8 180 459-645 30-259 (337)
130 2oap_1 GSPE-2, type II secreti 99.5 2E-16 7E-21 177.9 -10.6 175 474-664 247-458 (511)
131 1htw_A HI0065; nucleotide-bind 99.4 2.6E-16 8.8E-21 150.0 -9.7 88 462-558 11-99 (158)
132 2bdt_A BH3686; alpha-beta prot 99.4 1.9E-16 6.6E-21 155.0 -11.6 165 487-683 2-182 (189)
133 1p9r_A General secretion pathw 99.4 1.8E-16 6.1E-21 174.0 -13.6 130 475-621 157-314 (418)
134 3e70_C DPA, signal recognition 99.4 5.7E-15 2E-19 157.1 -1.7 166 483-675 125-307 (328)
135 1sxj_E Activator 1 40 kDa subu 99.4 4.3E-14 1.5E-18 151.9 5.0 137 489-659 38-176 (354)
136 2rcn_A Probable GTPase ENGC; Y 99.4 3.8E-14 1.3E-18 151.8 3.5 123 475-614 204-329 (358)
137 3auy_A DNA double-strand break 99.4 2.8E-13 9.6E-18 147.0 10.1 74 597-670 279-359 (371)
138 2bbw_A Adenylate kinase 4, AK4 99.4 4.3E-15 1.5E-19 151.9 -5.2 169 486-671 26-218 (246)
139 3lda_A DNA repair protein RAD5 99.4 5.4E-13 1.8E-17 145.5 8.8 147 483-673 174-364 (400)
140 3lnc_A Guanylate kinase, GMP k 99.3 3.2E-15 1.1E-19 151.3 -12.2 188 473-683 13-222 (231)
141 2kjq_A DNAA-related protein; s 99.3 1.1E-12 3.8E-17 123.6 5.8 92 476-657 30-125 (149)
142 3ec2_A DNA replication protein 99.3 1.7E-12 5.7E-17 125.9 6.5 111 481-659 32-145 (180)
143 1cke_A CK, MSSA, protein (cyti 99.3 6.1E-14 2.1E-18 141.0 -4.9 129 486-627 4-151 (227)
144 2yv5_A YJEQ protein; hydrolase 99.3 3.1E-13 1.1E-17 142.4 -0.7 115 483-611 161-300 (302)
145 2x8a_A Nuclear valosin-contain 99.3 1.1E-14 3.8E-19 151.4 -12.1 144 474-641 33-190 (274)
146 1u0l_A Probable GTPase ENGC; p 99.2 4.4E-12 1.5E-16 133.6 2.4 105 482-587 164-291 (301)
147 4e22_A Cytidylate kinase; P-lo 99.2 2.2E-12 7.4E-17 132.4 -0.0 113 474-597 17-147 (252)
148 3tr0_A Guanylate kinase, GMP k 99.2 1E-11 3.4E-16 122.5 4.3 140 481-624 1-171 (205)
149 1udx_A The GTP-binding protein 99.1 4E-12 1.4E-16 139.2 -0.5 153 477-654 147-305 (416)
150 1sq5_A Pantothenate kinase; P- 99.1 1E-12 3.5E-17 138.9 -5.2 137 455-630 34-198 (308)
151 1ls1_A Signal recognition part 99.1 2.9E-11 9.9E-16 126.9 5.4 142 459-654 77-219 (295)
152 1vma_A Cell division protein F 99.1 9.5E-11 3.3E-15 123.3 8.0 98 480-627 97-197 (306)
153 2px0_A Flagellar biosynthesis 99.1 1.1E-10 3.7E-15 122.5 7.7 138 485-676 103-246 (296)
154 3a00_A Guanylate kinase, GMP k 99.0 3.5E-11 1.2E-15 117.4 1.7 127 487-624 1-169 (186)
155 3euj_A Chromosome partition pr 99.0 6.7E-11 2.3E-15 131.3 3.5 64 460-529 8-71 (483)
156 1t9h_A YLOQ, probable GTPase E 99.0 2.3E-11 8E-16 127.8 -1.1 96 482-579 168-287 (307)
157 1iy2_A ATP-dependent metallopr 98.9 1.5E-12 5E-17 135.5 -13.1 138 460-626 51-195 (278)
158 2ius_A DNA translocase FTSK; n 98.9 5.3E-11 1.8E-15 133.0 -2.8 158 479-658 159-343 (512)
159 1in4_A RUVB, holliday junction 98.9 8.6E-13 2.9E-17 141.1 -16.9 155 461-644 21-192 (334)
160 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2.5E-12 8.7E-17 139.5 -13.6 170 483-680 16-208 (392)
161 3ney_A 55 kDa erythrocyte memb 98.9 2.2E-10 7.6E-15 112.5 0.7 82 481-572 13-107 (197)
162 2dr3_A UPF0273 protein PH0284; 98.9 6.5E-10 2.2E-14 112.5 3.3 170 475-671 10-196 (247)
163 1ixz_A ATP-dependent metallopr 98.8 6.9E-12 2.4E-16 128.4 -12.4 140 459-627 26-172 (254)
164 1oix_A RAS-related protein RAB 98.8 2E-10 6.8E-15 112.2 -1.8 139 489-643 31-188 (191)
165 1kgd_A CASK, peripheral plasma 98.8 3.7E-10 1.3E-14 109.5 -1.0 80 485-572 3-93 (180)
166 1qhl_A Protein (cell division 98.8 9.8E-11 3.4E-15 117.8 -5.8 75 458-543 9-91 (227)
167 2qt1_A Nicotinamide riboside k 98.8 1.4E-09 4.9E-14 107.5 2.6 106 479-625 13-118 (207)
168 2zr9_A Protein RECA, recombina 98.8 1.3E-08 4.4E-13 109.1 9.9 143 483-679 57-237 (349)
169 2r6a_A DNAB helicase, replicat 98.8 5.8E-09 2E-13 116.0 7.1 177 475-674 191-401 (454)
170 3k1j_A LON protease, ATP-depen 98.7 2.2E-10 7.4E-15 132.2 -5.4 157 474-643 47-227 (604)
171 2dy1_A Elongation factor G; tr 98.7 2.4E-09 8.4E-14 124.4 3.3 133 481-659 3-138 (665)
172 1svm_A Large T antigen; AAA+ f 98.7 7.5E-11 2.6E-15 127.5 -10.2 138 475-627 157-312 (377)
173 3tau_A Guanylate kinase, GMP k 98.6 1.1E-08 3.6E-13 101.6 2.7 70 485-558 6-86 (208)
174 2f9l_A RAB11B, member RAS onco 98.6 6.7E-09 2.3E-13 101.8 1.0 139 489-643 7-164 (199)
175 2j41_A Guanylate kinase; GMP, 98.5 7E-09 2.4E-13 102.0 -0.6 83 482-572 1-94 (207)
176 3t34_A Dynamin-related protein 98.5 2.8E-08 9.5E-13 107.1 2.8 161 475-655 25-212 (360)
177 3uie_A Adenylyl-sulfate kinase 98.5 3.6E-09 1.2E-13 104.2 -4.3 60 463-526 4-65 (200)
178 3cr8_A Sulfate adenylyltranfer 98.5 6.9E-09 2.4E-13 117.5 -2.5 90 482-576 364-468 (552)
179 2ce7_A Cell division protein F 98.5 1.2E-07 4.1E-12 105.5 7.5 123 475-669 39-183 (476)
180 3nwj_A ATSK2; P loop, shikimat 98.5 1.3E-08 4.6E-13 103.8 -1.0 52 458-511 17-72 (250)
181 2qtf_A Protein HFLX, GTP-bindi 98.4 1.2E-07 4.2E-12 102.1 5.7 143 489-644 181-351 (364)
182 4eun_A Thermoresistant glucoki 98.4 2.3E-08 7.7E-13 98.4 -0.6 61 480-545 22-82 (200)
183 1zu4_A FTSY; GTPase, signal re 98.4 5.7E-08 2E-12 102.8 2.2 69 476-544 94-172 (320)
184 3vaa_A Shikimate kinase, SK; s 98.4 6.3E-08 2.2E-12 95.1 2.0 45 467-511 5-49 (199)
185 3kta_A Chromosome segregation 98.4 1.4E-08 4.8E-13 98.0 -3.0 66 478-544 18-89 (182)
186 2dhr_A FTSH; AAA+ protein, hex 98.4 1E-08 3.5E-13 114.7 -5.6 140 460-628 42-188 (499)
187 1jjv_A Dephospho-COA kinase; P 98.3 5.4E-07 1.8E-11 88.7 5.3 126 489-671 4-132 (206)
188 3ice_A Transcription terminati 98.3 7.6E-08 2.6E-12 102.7 -1.1 56 454-511 129-198 (422)
189 2vp4_A Deoxynucleoside kinase; 98.2 3.3E-08 1.1E-12 99.6 -4.3 65 480-548 13-87 (230)
190 2ffh_A Protein (FFH); SRP54, s 98.2 3.2E-06 1.1E-10 92.5 11.0 164 459-655 77-246 (425)
191 3tqc_A Pantothenate kinase; bi 98.2 6.7E-08 2.3E-12 102.1 -3.2 126 474-631 73-211 (321)
192 2eyu_A Twitching motility prot 98.2 5.5E-07 1.9E-11 92.5 2.6 59 606-670 88-146 (261)
193 3hr8_A Protein RECA; alpha and 98.2 5.1E-06 1.8E-10 88.8 10.3 59 483-544 57-116 (356)
194 2xau_A PRE-mRNA-splicing facto 98.1 2.5E-06 8.4E-11 100.8 7.2 65 597-661 189-256 (773)
195 2z43_A DNA repair and recombin 98.1 1.4E-06 4.9E-11 92.3 4.6 27 483-509 103-129 (324)
196 1uf9_A TT1252 protein; P-loop, 98.1 2.6E-08 8.8E-13 97.6 -8.6 33 487-524 8-40 (203)
197 2e87_A Hypothetical protein PH 98.1 9E-06 3.1E-10 87.3 9.8 62 597-659 230-294 (357)
198 3kl4_A SRP54, signal recogniti 98.1 5.4E-06 1.9E-10 90.8 7.8 40 486-525 96-135 (433)
199 3m6a_A ATP-dependent protease 98.0 7.9E-07 2.7E-11 100.9 0.6 58 461-522 86-143 (543)
200 4a1f_A DNAB helicase, replicat 98.0 1.1E-05 3.7E-10 85.7 7.7 104 475-630 34-141 (338)
201 1knq_A Gluconate kinase; ALFA/ 97.9 1.8E-06 6.1E-11 82.5 0.7 38 485-526 6-43 (175)
202 1rz3_A Hypothetical protein rb 97.9 2.1E-06 7.3E-11 84.3 1.2 48 483-530 18-65 (201)
203 1fnn_A CDC6P, cell division co 97.9 4.4E-05 1.5E-09 82.0 10.9 45 615-660 124-172 (389)
204 3b9p_A CG5977-PA, isoform A; A 97.7 0.00014 4.9E-09 75.3 11.5 71 600-670 97-187 (297)
205 2pez_A Bifunctional 3'-phospho 97.7 2.8E-06 9.5E-11 81.6 -1.6 41 485-526 3-45 (179)
206 2z4s_A Chromosomal replication 97.7 5.1E-05 1.7E-09 83.8 7.4 64 616-679 194-262 (440)
207 1ypw_A Transitional endoplasmi 97.7 6.2E-06 2.1E-10 97.9 -0.2 33 481-513 232-264 (806)
208 3lxx_A GTPase IMAP family memb 97.7 0.0002 6.7E-09 72.0 11.0 29 489-517 31-59 (239)
209 1v5w_A DMC1, meiotic recombina 97.6 6E-05 2E-09 80.4 7.3 28 483-510 118-145 (343)
210 1j8m_F SRP54, signal recogniti 97.6 0.00011 3.9E-09 76.6 9.0 62 461-528 77-139 (297)
211 3llm_A ATP-dependent RNA helic 97.6 5.2E-05 1.8E-09 76.1 6.2 133 483-652 72-213 (235)
212 1sxj_C Activator 1 40 kDa subu 97.6 1.1E-05 3.6E-10 86.0 1.0 44 474-517 31-76 (340)
213 1f6b_A SAR1; gtpases, N-termin 97.6 2.2E-05 7.4E-10 76.6 2.1 58 464-524 5-70 (198)
214 2qby_A CDC6 homolog 1, cell di 97.5 5.3E-05 1.8E-09 81.1 5.0 31 485-515 43-73 (386)
215 1lv7_A FTSH; alpha/beta domain 97.5 0.00024 8.3E-09 72.0 9.6 45 476-524 36-80 (257)
216 3r20_A Cytidylate kinase; stru 97.5 6.7E-06 2.3E-10 82.7 -2.6 69 487-555 9-95 (233)
217 1m7g_A Adenylylsulfate kinase; 97.5 1.3E-05 4.6E-10 79.0 -0.9 43 482-524 20-64 (211)
218 1mky_A Probable GTP-binding pr 97.4 4.8E-05 1.6E-09 84.0 3.3 194 488-699 181-419 (439)
219 4eaq_A DTMP kinase, thymidylat 97.4 3.4E-05 1.2E-09 77.4 1.6 44 477-521 13-59 (229)
220 1kag_A SKI, shikimate kinase I 97.4 4.2E-05 1.5E-09 72.5 2.1 33 486-522 3-35 (173)
221 1ega_A Protein (GTP-binding pr 97.4 7.8E-05 2.7E-09 78.0 4.0 144 486-661 7-163 (301)
222 2p67_A LAO/AO transport system 97.4 2E-05 7E-10 84.0 -0.6 52 475-526 44-95 (341)
223 1l8q_A Chromosomal replication 97.4 0.00015 5.1E-09 76.4 6.0 29 486-514 36-64 (324)
224 3bh0_A DNAB-like replicative h 97.4 0.00011 3.9E-09 77.3 4.9 35 475-509 56-90 (315)
225 2qor_A Guanylate kinase; phosp 97.3 2.9E-05 9.8E-10 76.2 -0.1 69 483-554 8-87 (204)
226 2w58_A DNAI, primosome compone 97.3 0.00013 4.4E-09 71.1 4.1 27 488-514 55-81 (202)
227 2www_A Methylmalonic aciduria 97.2 6.9E-05 2.3E-09 80.1 1.2 43 485-527 72-114 (349)
228 3h4m_A Proteasome-activating n 97.2 0.00052 1.8E-08 70.5 7.8 28 484-511 48-75 (285)
229 2jaq_A Deoxyguanosine kinase; 97.2 1.3E-05 4.6E-10 78.0 -4.3 70 489-558 2-87 (205)
230 2gj8_A MNME, tRNA modification 97.2 0.00019 6.5E-09 68.1 3.8 27 485-511 2-28 (172)
231 1m2o_B GTP-binding protein SAR 97.2 0.00016 5.4E-09 69.8 3.3 48 475-523 12-67 (190)
232 3cf0_A Transitional endoplasmi 97.2 0.00064 2.2E-08 70.9 7.9 31 481-511 43-73 (301)
233 1u94_A RECA protein, recombina 97.2 0.0015 5.1E-08 69.8 10.9 34 475-509 49-85 (356)
234 3bos_A Putative DNA replicatio 97.2 0.0002 6.7E-09 71.2 3.7 27 486-512 51-77 (242)
235 4fcw_A Chaperone protein CLPB; 97.1 0.0011 3.9E-08 68.8 8.6 32 487-518 47-78 (311)
236 1njg_A DNA polymerase III subu 97.0 0.00023 8E-09 70.1 2.7 45 615-660 125-169 (250)
237 1y63_A LMAJ004144AAA protein; 97.0 0.00031 1.1E-08 67.6 3.1 32 479-510 2-33 (184)
238 1sxj_D Activator 1 41 kDa subu 97.0 0.00017 5.7E-09 76.5 1.2 43 616-659 133-175 (353)
239 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00061 2.1E-08 63.4 3.8 30 478-508 15-44 (149)
240 1lw7_A Transcriptional regulat 96.8 2E-05 6.8E-10 84.8 -7.6 86 598-685 258-355 (365)
241 2qag_A Septin-2, protein NEDD5 96.8 0.00012 4.2E-09 78.6 -1.5 58 456-522 15-72 (361)
242 2p5t_B PEZT; postsegregational 96.8 0.00028 9.6E-09 71.7 1.2 42 483-526 28-69 (253)
243 2yvu_A Probable adenylyl-sulfa 96.8 0.00036 1.2E-08 67.1 1.7 40 483-522 9-49 (186)
244 3t61_A Gluconokinase; PSI-biol 96.8 0.00029 9.8E-09 68.7 1.0 34 487-524 18-51 (202)
245 2ohf_A Protein OLA1, GTP-bindi 96.7 0.0006 2E-08 73.7 3.2 41 483-523 18-69 (396)
246 3uk6_A RUVB-like 2; hexameric 96.7 0.0017 5.9E-08 69.2 6.7 40 485-524 68-107 (368)
247 3n70_A Transport activator; si 96.7 0.0047 1.6E-07 56.8 8.8 30 485-514 22-51 (145)
248 2wji_A Ferrous iron transport 96.7 0.0011 3.9E-08 62.0 4.6 23 489-511 5-27 (165)
249 4dcu_A GTP-binding protein ENG 96.7 0.0016 5.5E-08 72.0 6.4 58 601-661 87-145 (456)
250 2ewv_A Twitching motility prot 96.7 0.00065 2.2E-08 73.1 2.8 57 606-668 199-255 (372)
251 2wjg_A FEOB, ferrous iron tran 96.7 0.00082 2.8E-08 64.0 3.2 22 489-510 9-30 (188)
252 3qf4_A ABC transporter, ATP-bi 96.7 1.3 4.5E-05 50.1 34.2 178 182-366 72-254 (587)
253 3dm5_A SRP54, signal recogniti 96.6 0.008 2.7E-07 65.8 11.3 35 486-520 99-133 (443)
254 2q6t_A DNAB replication FORK h 96.6 0.0023 7.8E-08 70.5 7.1 37 475-511 188-224 (444)
255 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0067 2.3E-07 61.1 9.7 27 485-511 37-63 (262)
256 1np6_A Molybdopterin-guanine d 96.6 0.00059 2E-08 65.3 1.7 38 487-524 6-46 (174)
257 2i1q_A DNA repair and recombin 96.6 0.00087 3E-08 70.5 3.2 26 483-508 94-119 (322)
258 2v1u_A Cell division control p 96.5 0.0016 5.6E-08 69.4 4.8 27 485-511 42-68 (387)
259 2zej_A Dardarin, leucine-rich 96.5 0.0013 4.5E-08 62.7 3.4 26 489-514 4-29 (184)
260 3b5x_A Lipid A export ATP-bind 96.5 1.7 5.8E-05 49.2 37.3 32 190-221 74-105 (582)
261 3qf4_B Uncharacterized ABC tra 96.5 1.1 3.7E-05 51.0 28.2 96 121-221 20-117 (598)
262 1ex7_A Guanylate kinase; subst 96.4 0.00085 2.9E-08 64.9 1.8 74 489-572 3-89 (186)
263 3d8b_A Fidgetin-like protein 1 96.4 0.0058 2E-07 65.2 8.4 27 485-511 115-141 (357)
264 3lxw_A GTPase IMAP family memb 96.4 0.0065 2.2E-07 61.3 8.3 58 601-659 87-151 (247)
265 2if2_A Dephospho-COA kinase; a 96.4 0.0013 4.5E-08 63.9 2.9 21 489-509 3-23 (204)
266 3ihw_A Centg3; RAS, centaurin, 96.4 0.0026 8.8E-08 60.8 4.9 36 489-524 22-66 (184)
267 3syl_A Protein CBBX; photosynt 96.3 0.018 6.1E-07 59.6 11.1 27 485-511 65-91 (309)
268 1ypw_A Transitional endoplasmi 96.3 0.00076 2.6E-08 80.0 0.5 33 479-511 503-535 (806)
269 1qhx_A CPT, protein (chloramph 96.3 0.0021 7E-08 60.9 3.4 27 486-512 2-28 (178)
270 2ga8_A Hypothetical 39.9 kDa p 96.3 0.00064 2.2E-08 72.1 -0.3 37 475-511 10-48 (359)
271 3cm0_A Adenylate kinase; ATP-b 96.2 0.0017 5.9E-08 61.9 2.6 27 485-511 2-28 (186)
272 3qks_A DNA double-strand break 96.1 0.0029 1E-07 61.9 3.8 30 478-508 15-44 (203)
273 1gtv_A TMK, thymidylate kinase 96.1 0.00054 1.8E-08 67.1 -1.7 89 489-597 2-97 (214)
274 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.018 6E-07 60.5 9.8 28 484-511 42-69 (322)
275 3b60_A Lipid A export ATP-bind 96.1 2.6 9E-05 47.6 33.2 35 188-222 72-106 (582)
276 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0023 7.8E-08 69.2 2.9 58 615-672 261-335 (392)
277 1fzq_A ADP-ribosylation factor 96.1 0.0032 1.1E-07 59.9 3.6 29 488-516 17-49 (181)
278 3kb2_A SPBC2 prophage-derived 96.1 0.0027 9.3E-08 59.5 3.0 24 488-511 2-25 (173)
279 1kht_A Adenylate kinase; phosp 96.0 0.0031 1E-07 60.2 3.3 26 486-511 2-27 (192)
280 3t15_A Ribulose bisphosphate c 96.0 0.0076 2.6E-07 62.4 6.5 27 485-511 34-60 (293)
281 3trf_A Shikimate kinase, SK; a 96.0 0.0032 1.1E-07 60.1 3.2 26 486-511 4-29 (185)
282 2v54_A DTMP kinase, thymidylat 96.0 0.003 1E-07 61.1 3.1 27 485-511 2-28 (204)
283 1ko7_A HPR kinase/phosphatase; 96.0 0.0021 7.2E-08 67.1 1.9 34 475-509 133-166 (314)
284 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0063 2.2E-07 63.7 5.4 28 482-509 118-145 (331)
285 1gvn_B Zeta; postsegregational 95.9 0.0033 1.1E-07 65.1 3.3 36 485-522 31-66 (287)
286 2chg_A Replication factor C sm 95.9 0.01 3.5E-07 57.4 6.7 43 615-658 101-143 (226)
287 2rhm_A Putative kinase; P-loop 95.9 0.0032 1.1E-07 60.3 2.7 27 485-511 3-29 (193)
288 1vht_A Dephospho-COA kinase; s 95.9 0.0036 1.2E-07 61.5 3.2 32 486-522 3-34 (218)
289 1xp8_A RECA protein, recombina 95.9 0.018 6E-07 61.7 8.6 26 483-508 70-95 (366)
290 2qp9_X Vacuolar protein sortin 95.8 0.023 7.9E-07 60.5 9.4 28 484-511 81-108 (355)
291 1q3t_A Cytidylate kinase; nucl 95.8 0.0036 1.2E-07 62.6 2.8 27 484-510 13-39 (236)
292 2b8t_A Thymidine kinase; deoxy 95.8 0.0069 2.4E-07 60.2 4.8 51 616-670 89-150 (223)
293 1jal_A YCHF protein; nucleotid 95.8 0.0054 1.9E-07 65.5 4.2 36 487-522 2-48 (363)
294 3zvl_A Bifunctional polynucleo 95.8 0.03 1E-06 61.0 10.3 35 484-522 255-289 (416)
295 3lw7_A Adenylate kinase relate 95.8 0.0043 1.5E-07 57.9 3.1 19 489-507 3-21 (179)
296 3iij_A Coilin-interacting nucl 95.8 0.0031 1.1E-07 60.0 2.0 27 485-511 9-35 (180)
297 2c95_A Adenylate kinase 1; tra 95.7 0.0047 1.6E-07 59.2 3.0 27 485-511 7-33 (196)
298 2wwf_A Thymidilate kinase, put 95.7 0.005 1.7E-07 59.9 3.2 27 485-511 8-34 (212)
299 1nn5_A Similar to deoxythymidy 95.6 0.0053 1.8E-07 59.8 3.1 28 484-511 6-33 (215)
300 3co5_A Putative two-component 95.6 0.016 5.5E-07 53.0 6.2 28 485-512 25-52 (143)
301 2plr_A DTMP kinase, probable t 95.6 0.0054 1.9E-07 59.5 3.1 28 486-513 3-30 (213)
302 2zan_A Vacuolar protein sortin 95.6 0.034 1.2E-06 61.1 9.8 28 484-511 164-191 (444)
303 3cmw_A Protein RECA, recombina 95.5 0.037 1.3E-06 69.7 10.9 36 483-518 728-763 (1706)
304 2bwj_A Adenylate kinase 5; pho 95.5 0.0027 9.1E-08 61.2 0.4 29 483-511 8-36 (199)
305 3cbq_A GTP-binding protein REM 95.5 0.006 2.1E-07 58.9 2.8 22 489-510 25-46 (195)
306 1via_A Shikimate kinase; struc 95.4 0.0061 2.1E-07 57.6 2.7 23 489-511 6-28 (175)
307 3bgw_A DNAB-like replicative h 95.4 0.009 3.1E-07 65.7 4.4 33 476-508 186-218 (444)
308 2vli_A Antibiotic resistance p 95.4 0.0061 2.1E-07 57.8 2.4 27 485-511 3-29 (183)
309 2lkc_A Translation initiation 95.4 0.018 6.2E-07 53.7 5.8 25 485-509 6-30 (178)
310 1ly1_A Polynucleotide kinase; 95.3 0.0078 2.7E-07 56.7 3.0 22 488-509 3-24 (181)
311 3pfi_A Holliday junction ATP-d 95.3 0.063 2.2E-06 56.2 10.3 24 488-511 56-79 (338)
312 1tev_A UMP-CMP kinase; ploop, 95.3 0.0081 2.8E-07 57.3 3.0 26 486-511 2-27 (196)
313 1jr3_A DNA polymerase III subu 95.2 0.032 1.1E-06 59.1 7.8 42 616-658 119-160 (373)
314 2qby_B CDC6 homolog 3, cell di 95.2 0.0067 2.3E-07 64.8 2.4 26 486-511 44-69 (384)
315 2ze6_A Isopentenyl transferase 95.2 0.0067 2.3E-07 61.5 2.3 24 488-511 2-25 (253)
316 1xjc_A MOBB protein homolog; s 95.2 0.006 2.1E-07 57.9 1.7 35 488-522 5-42 (169)
317 1aky_A Adenylate kinase; ATP:A 95.1 0.01 3.5E-07 58.4 3.4 27 485-511 2-28 (220)
318 1nks_A Adenylate kinase; therm 95.1 0.0086 2.9E-07 57.1 2.8 24 489-512 3-26 (194)
319 2fn4_A P23, RAS-related protei 95.1 0.013 4.5E-07 54.7 4.0 22 489-510 11-32 (181)
320 2erx_A GTP-binding protein DI- 95.1 0.018 6E-07 53.3 4.7 21 489-509 5-25 (172)
321 4a82_A Cystic fibrosis transme 95.0 6.1 0.00021 44.5 31.4 12 459-470 355-366 (578)
322 2cdn_A Adenylate kinase; phosp 95.0 0.013 4.4E-07 56.7 3.4 26 486-511 19-44 (201)
323 2dby_A GTP-binding protein; GD 95.0 0.0072 2.5E-07 64.8 1.7 22 489-510 3-24 (368)
324 3hu3_A Transitional endoplasmi 94.9 0.042 1.4E-06 61.1 8.0 28 484-511 235-262 (489)
325 2z0h_A DTMP kinase, thymidylat 94.9 0.011 3.9E-07 56.6 3.0 23 489-511 2-24 (197)
326 1zd8_A GTP:AMP phosphotransfer 94.9 0.011 3.9E-07 58.4 3.1 27 485-511 5-31 (227)
327 1hqc_A RUVB; extended AAA-ATPa 94.9 0.043 1.5E-06 57.0 7.6 25 486-510 37-61 (324)
328 3q72_A GTP-binding protein RAD 94.9 0.012 4.2E-07 54.2 3.1 23 489-511 4-26 (166)
329 1e6c_A Shikimate kinase; phosp 94.9 0.011 3.7E-07 55.4 2.7 24 488-511 3-26 (173)
330 1zuh_A Shikimate kinase; alpha 94.9 0.013 4.5E-07 54.8 3.1 25 487-511 7-31 (168)
331 2ew1_A RAS-related protein RAB 94.9 0.017 5.8E-07 56.0 4.0 21 489-509 28-48 (201)
332 2iyv_A Shikimate kinase, SK; t 94.9 0.011 3.8E-07 56.2 2.7 25 487-511 2-26 (184)
333 3iby_A Ferrous iron transport 94.8 0.012 4.1E-07 59.7 3.0 23 489-511 3-25 (256)
334 3fb4_A Adenylate kinase; psych 94.8 0.012 4.2E-07 57.5 3.0 23 489-511 2-24 (216)
335 1a7j_A Phosphoribulokinase; tr 94.8 0.0085 2.9E-07 62.0 1.8 26 486-511 4-29 (290)
336 1zak_A Adenylate kinase; ATP:A 94.8 0.011 3.9E-07 58.1 2.7 26 486-511 4-29 (222)
337 1ksh_A ARF-like protein 2; sma 94.8 0.03 1E-06 52.9 5.5 26 485-510 16-41 (186)
338 1ukz_A Uridylate kinase; trans 94.8 0.013 4.4E-07 56.7 2.9 26 486-511 14-39 (203)
339 2pt5_A Shikimate kinase, SK; a 94.8 0.014 4.7E-07 54.5 3.0 23 489-511 2-24 (168)
340 3eie_A Vacuolar protein sortin 94.8 0.026 9E-07 59.0 5.5 26 485-510 49-74 (322)
341 2nzj_A GTP-binding protein REM 94.7 0.016 5.3E-07 54.0 3.2 23 489-511 6-28 (175)
342 2grj_A Dephospho-COA kinase; T 94.7 0.014 4.9E-07 56.5 3.0 24 488-511 13-36 (192)
343 1qf9_A UMP/CMP kinase, protein 94.7 0.014 4.7E-07 55.6 2.7 25 487-511 6-30 (194)
344 3t5d_A Septin-7; GTP-binding p 94.7 0.014 4.9E-07 59.6 3.0 22 489-510 10-31 (274)
345 3k53_A Ferrous iron transport 94.7 0.014 4.7E-07 59.6 2.9 24 489-512 5-28 (271)
346 3pxi_A Negative regulator of g 94.6 0.046 1.6E-06 64.3 7.7 23 489-511 523-545 (758)
347 3q85_A GTP-binding protein REM 94.6 0.016 5.5E-07 53.6 3.1 23 489-511 4-26 (169)
348 3dl0_A Adenylate kinase; phosp 94.6 0.015 5E-07 56.9 3.0 23 489-511 2-24 (216)
349 2pbr_A DTMP kinase, thymidylat 94.6 0.015 5.2E-07 55.4 2.9 23 489-511 2-24 (195)
350 1z2a_A RAS-related protein RAB 94.6 0.013 4.4E-07 54.0 2.4 21 489-509 7-27 (168)
351 1z0j_A RAB-22, RAS-related pro 94.6 0.019 6.6E-07 53.0 3.6 23 489-511 8-30 (170)
352 3ake_A Cytidylate kinase; CMP 94.6 0.015 5.2E-07 56.2 3.0 23 489-511 4-26 (208)
353 3tlx_A Adenylate kinase 2; str 94.6 0.016 5.5E-07 58.2 3.1 27 485-511 27-53 (243)
354 3tw8_B RAS-related protein RAB 94.5 0.018 6.2E-07 53.7 3.3 22 489-510 11-32 (181)
355 1kao_A RAP2A; GTP-binding prot 94.5 0.015 5.1E-07 53.4 2.4 21 489-509 5-25 (167)
356 2ged_A SR-beta, signal recogni 94.5 0.015 5.1E-07 55.4 2.4 25 487-511 48-72 (193)
357 2oil_A CATX-8, RAS-related pro 94.4 0.021 7.3E-07 54.3 3.5 21 489-509 27-47 (193)
358 1r2q_A RAS-related protein RAB 94.4 0.022 7.5E-07 52.5 3.5 21 489-509 8-28 (170)
359 3clv_A RAB5 protein, putative; 94.4 0.021 7.2E-07 54.3 3.4 22 489-510 9-30 (208)
360 1uj2_A Uridine-cytidine kinase 94.4 0.018 6.1E-07 58.1 3.0 24 488-511 23-46 (252)
361 2dyk_A GTP-binding protein; GT 94.4 0.016 5.5E-07 53.0 2.4 22 489-510 3-24 (161)
362 1u8z_A RAS-related protein RAL 94.4 0.016 5.4E-07 53.2 2.4 21 489-509 6-26 (168)
363 2ce2_X GTPase HRAS; signaling 94.4 0.015 5.1E-07 53.3 2.2 22 489-510 5-26 (166)
364 3a4m_A L-seryl-tRNA(SEC) kinas 94.4 0.019 6.4E-07 58.3 3.1 26 485-510 2-27 (260)
365 3u61_B DNA polymerase accessor 94.4 0.037 1.3E-06 57.7 5.5 44 616-659 105-148 (324)
366 1svi_A GTP-binding protein YSX 94.3 0.018 6E-07 54.9 2.7 24 487-510 23-46 (195)
367 1c1y_A RAS-related protein RAP 94.3 0.017 5.7E-07 53.2 2.4 21 489-509 5-25 (167)
368 1z08_A RAS-related protein RAB 94.3 0.017 5.8E-07 53.4 2.4 21 489-509 8-28 (170)
369 2bcg_Y Protein YP2, GTP-bindin 94.3 0.03 1E-06 53.9 4.3 21 489-509 10-30 (206)
370 2qmh_A HPR kinase/phosphorylas 94.3 0.029 9.8E-07 54.5 4.1 35 475-510 23-57 (205)
371 3vfd_A Spastin; ATPase, microt 94.3 0.087 3E-06 56.6 8.4 27 485-511 146-172 (389)
372 3b1v_A Ferrous iron uptake tra 94.3 0.02 7E-07 58.6 3.2 23 489-511 5-27 (272)
373 3a8t_A Adenylate isopentenyltr 94.3 0.023 7.8E-07 59.9 3.6 27 485-511 38-64 (339)
374 1ek0_A Protein (GTP-binding pr 94.3 0.018 6E-07 53.2 2.4 21 489-509 5-25 (170)
375 1g16_A RAS-related protein SEC 94.3 0.016 5.6E-07 53.5 2.2 21 489-509 5-25 (170)
376 3pqc_A Probable GTP-binding pr 94.3 0.019 6.4E-07 54.4 2.7 23 489-511 25-47 (195)
377 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.018 6.1E-07 53.7 2.4 21 489-509 9-29 (177)
378 1ky3_A GTP-binding protein YPT 94.2 0.018 6.1E-07 53.9 2.4 21 489-509 10-30 (182)
379 2f6r_A COA synthase, bifunctio 94.2 0.018 6.3E-07 59.2 2.7 23 487-509 75-97 (281)
380 4b4t_L 26S protease subunit RP 94.2 0.056 1.9E-06 59.1 6.7 29 483-511 211-239 (437)
381 3t1o_A Gliding protein MGLA; G 94.2 0.019 6.5E-07 54.5 2.6 25 489-513 16-40 (198)
382 4bas_A ADP-ribosylation factor 94.2 0.033 1.1E-06 53.0 4.2 30 487-516 17-52 (199)
383 2cxx_A Probable GTP-binding pr 94.1 0.021 7.1E-07 54.0 2.6 22 489-510 3-24 (190)
384 1m7b_A RND3/RHOE small GTP-bin 94.1 0.023 8E-07 53.7 2.9 22 489-510 9-30 (184)
385 3be4_A Adenylate kinase; malar 94.1 0.023 7.9E-07 55.8 2.9 26 486-511 4-29 (217)
386 3auy_A DNA double-strand break 94.0 0.027 9.3E-07 60.3 3.6 31 477-508 16-46 (371)
387 3euj_A Chromosome partition pr 94.0 0.078 2.7E-06 58.6 7.3 77 590-670 371-464 (483)
388 4dsu_A GTPase KRAS, isoform 2B 94.0 0.021 7.3E-07 53.8 2.4 21 489-509 6-26 (189)
389 3bc1_A RAS-related protein RAB 94.0 0.021 7.2E-07 53.9 2.4 21 489-509 13-33 (195)
390 1moz_A ARL1, ADP-ribosylation 94.0 0.02 7E-07 53.7 2.3 24 486-509 17-40 (183)
391 2hxs_A RAB-26, RAS-related pro 94.0 0.025 8.5E-07 52.8 2.8 22 489-510 8-29 (178)
392 3t5g_A GTP-binding protein RHE 94.0 0.04 1.4E-06 51.6 4.3 20 489-508 8-27 (181)
393 3c5c_A RAS-like protein 12; GD 93.9 0.057 2E-06 51.3 5.4 28 489-516 23-55 (187)
394 1r8s_A ADP-ribosylation factor 93.9 0.023 7.8E-07 52.2 2.4 21 489-509 2-22 (164)
395 3v9p_A DTMP kinase, thymidylat 93.9 0.024 8.4E-07 56.4 2.7 29 484-512 22-50 (227)
396 2yl4_A ATP-binding cassette SU 93.8 11 0.00037 42.6 39.7 185 180-371 69-258 (595)
397 1wf3_A GTP-binding protein; GT 93.8 0.027 9.3E-07 58.5 3.1 22 489-510 9-30 (301)
398 1upt_A ARL1, ADP-ribosylation 93.8 0.024 8.1E-07 52.5 2.4 23 487-509 7-29 (171)
399 2g6b_A RAS-related protein RAB 93.8 0.024 8.1E-07 53.0 2.4 21 489-509 12-32 (180)
400 2y8e_A RAB-protein 6, GH09086P 93.8 0.022 7.6E-07 53.0 2.2 21 489-509 16-36 (179)
401 3kkq_A RAS-related protein M-R 93.8 0.05 1.7E-06 51.1 4.6 21 489-509 20-40 (183)
402 4b4t_J 26S protease regulatory 93.7 0.024 8.2E-07 61.2 2.5 29 483-511 178-206 (405)
403 2xtp_A GTPase IMAP family memb 93.7 0.028 9.5E-07 56.7 2.9 23 488-510 23-45 (260)
404 2il1_A RAB12; G-protein, GDP, 93.7 0.033 1.1E-06 53.1 3.3 22 489-510 28-49 (192)
405 1z0f_A RAB14, member RAS oncog 93.7 0.026 8.8E-07 52.6 2.4 22 489-510 17-38 (179)
406 1e4v_A Adenylate kinase; trans 93.7 0.028 9.6E-07 54.9 2.7 23 489-511 2-24 (214)
407 2efe_B Small GTP-binding prote 93.7 0.026 8.9E-07 52.8 2.4 22 489-510 14-35 (181)
408 2fg5_A RAB-22B, RAS-related pr 93.7 0.046 1.6E-06 52.1 4.2 21 489-509 25-45 (192)
409 3con_A GTPase NRAS; structural 93.7 0.026 8.8E-07 53.5 2.4 21 489-509 23-43 (190)
410 4edh_A DTMP kinase, thymidylat 93.6 0.032 1.1E-06 54.9 3.1 29 485-513 4-32 (213)
411 2h92_A Cytidylate kinase; ross 93.6 0.022 7.7E-07 55.7 1.9 25 487-511 3-27 (219)
412 2qu8_A Putative nucleolar GTP- 93.6 0.034 1.2E-06 54.8 3.2 23 488-510 30-52 (228)
413 2gf0_A GTP-binding protein DI- 93.6 0.041 1.4E-06 52.3 3.8 21 489-509 10-30 (199)
414 2a9k_A RAS-related protein RAL 93.6 0.027 9.2E-07 52.9 2.4 21 489-509 20-40 (187)
415 2xxa_A Signal recognition part 93.6 0.33 1.1E-05 53.0 11.3 30 485-514 98-127 (433)
416 2r8r_A Sensor protein; KDPD, P 93.6 0.026 9E-07 56.0 2.3 43 613-655 81-125 (228)
417 3tmk_A Thymidylate kinase; pho 93.6 0.027 9.1E-07 55.7 2.4 29 485-513 3-31 (216)
418 4b4t_K 26S protease regulatory 93.6 0.21 7.2E-06 54.3 9.7 29 483-511 202-230 (428)
419 2xb4_A Adenylate kinase; ATP-b 93.6 0.032 1.1E-06 55.0 3.0 23 489-511 2-24 (223)
420 3iev_A GTP-binding protein ERA 93.6 0.032 1.1E-06 58.1 3.1 23 488-510 11-33 (308)
421 1zbd_A Rabphilin-3A; G protein 93.6 0.034 1.2E-06 53.3 3.1 22 489-510 10-31 (203)
422 1p5z_B DCK, deoxycytidine kina 93.6 0.025 8.5E-07 57.4 2.1 28 484-511 21-48 (263)
423 1sxj_B Activator 1 37 kDa subu 93.5 0.064 2.2E-06 55.4 5.4 42 616-658 107-148 (323)
424 1ak2_A Adenylate kinase isoenz 93.5 0.038 1.3E-06 54.9 3.4 26 486-511 15-40 (233)
425 4tmk_A Protein (thymidylate ki 93.5 0.035 1.2E-06 54.6 3.2 27 486-512 2-28 (213)
426 2h57_A ADP-ribosylation factor 93.5 0.032 1.1E-06 53.0 2.8 24 488-511 22-45 (190)
427 3lv8_A DTMP kinase, thymidylat 93.5 0.035 1.2E-06 55.6 3.1 28 486-513 26-53 (236)
428 4dhe_A Probable GTP-binding pr 93.5 0.019 6.4E-07 56.1 1.1 25 487-511 29-53 (223)
429 2gf9_A RAS-related protein RAB 93.5 0.03 1E-06 53.2 2.4 21 489-509 24-44 (189)
430 2bme_A RAB4A, RAS-related prot 93.4 0.028 9.5E-07 52.9 2.2 21 489-509 12-32 (186)
431 3ld9_A DTMP kinase, thymidylat 93.4 0.037 1.3E-06 54.9 3.1 28 485-512 19-46 (223)
432 1vg8_A RAS-related protein RAB 93.4 0.031 1E-06 53.7 2.4 22 489-510 10-31 (207)
433 1sky_E F1-ATPase, F1-ATP synth 93.4 0.017 5.7E-07 63.6 0.6 42 476-518 141-182 (473)
434 3llu_A RAS-related GTP-binding 93.4 0.037 1.3E-06 53.0 3.0 24 489-512 22-45 (196)
435 3i8s_A Ferrous iron transport 93.4 0.034 1.2E-06 56.8 2.9 23 489-511 5-27 (274)
436 2bov_A RAla, RAS-related prote 93.4 0.03 1E-06 53.6 2.4 21 489-509 16-36 (206)
437 1gwn_A RHO-related GTP-binding 93.4 0.042 1.4E-06 53.3 3.4 22 489-510 30-51 (205)
438 1z06_A RAS-related protein RAB 93.4 0.032 1.1E-06 52.9 2.4 21 489-509 22-42 (189)
439 2o52_A RAS-related protein RAB 93.3 0.037 1.3E-06 53.2 2.9 22 489-510 27-48 (200)
440 3tqf_A HPR(Ser) kinase; transf 93.3 0.052 1.8E-06 51.5 3.7 32 476-508 6-37 (181)
441 3tkl_A RAS-related protein RAB 93.3 0.032 1.1E-06 53.0 2.4 21 489-509 18-38 (196)
442 3a1s_A Iron(II) transport prot 93.3 0.04 1.4E-06 55.9 3.1 23 489-511 7-29 (258)
443 1zj6_A ADP-ribosylation factor 93.3 0.039 1.3E-06 52.2 2.9 23 487-509 16-38 (187)
444 3exa_A TRNA delta(2)-isopenten 93.3 0.04 1.4E-06 57.4 3.1 25 487-511 3-27 (322)
445 3cmu_A Protein RECA, recombina 93.2 0.12 3.9E-06 66.2 7.8 35 474-508 1066-1102(2050)
446 1nrj_B SR-beta, signal recogni 93.2 0.033 1.1E-06 54.2 2.4 23 489-511 14-36 (218)
447 1mh1_A RAC1; GTP-binding, GTPa 93.2 0.034 1.2E-06 52.2 2.4 20 489-508 7-26 (186)
448 2cjw_A GTP-binding protein GEM 93.2 0.034 1.2E-06 53.3 2.4 21 489-509 8-28 (192)
449 3oes_A GTPase rhebl1; small GT 93.2 0.031 1.1E-06 53.7 2.2 23 488-510 25-47 (201)
450 3d3q_A TRNA delta(2)-isopenten 93.2 0.039 1.3E-06 58.2 3.0 25 488-512 8-32 (340)
451 2h17_A ADP-ribosylation factor 93.2 0.035 1.2E-06 52.3 2.4 21 489-509 23-43 (181)
452 3dz8_A RAS-related protein RAB 93.1 0.033 1.1E-06 53.0 2.2 22 489-510 25-46 (191)
453 2a5j_A RAS-related protein RAB 93.1 0.036 1.2E-06 52.7 2.4 21 489-509 23-43 (191)
454 2f7s_A C25KG, RAS-related prot 93.1 0.046 1.6E-06 53.1 3.2 22 489-510 27-48 (217)
455 3def_A T7I23.11 protein; chlor 93.1 0.041 1.4E-06 55.7 2.9 22 489-510 38-59 (262)
456 2j1l_A RHO-related GTP-binding 93.1 0.043 1.5E-06 53.4 2.9 21 489-509 36-56 (214)
457 2j37_W Signal recognition part 93.1 0.67 2.3E-05 51.5 12.9 26 486-511 100-125 (504)
458 2ocp_A DGK, deoxyguanosine kin 93.1 0.042 1.4E-06 54.8 2.9 26 486-511 1-26 (241)
459 1h65_A Chloroplast outer envel 93.1 0.041 1.4E-06 56.0 2.9 23 489-511 41-63 (270)
460 1jbk_A CLPB protein; beta barr 93.0 0.051 1.7E-06 51.0 3.3 27 485-511 41-67 (195)
461 2q3h_A RAS homolog gene family 93.0 0.047 1.6E-06 52.2 3.1 24 487-510 20-43 (201)
462 2fu5_C RAS-related protein RAB 93.0 0.033 1.1E-06 52.4 1.9 21 489-509 10-30 (183)
463 1ltq_A Polynucleotide kinase; 93.0 0.042 1.4E-06 56.6 2.8 22 488-509 3-24 (301)
464 3cnl_A YLQF, putative uncharac 93.0 0.048 1.6E-06 55.5 3.2 30 488-517 100-129 (262)
465 2fv8_A H6, RHO-related GTP-bin 93.0 0.036 1.2E-06 53.6 2.2 33 477-509 15-47 (207)
466 1jwy_B Dynamin A GTPase domain 93.0 0.042 1.4E-06 56.9 2.9 23 489-511 26-48 (315)
467 2b6h_A ADP-ribosylation factor 93.0 0.047 1.6E-06 52.2 3.0 25 485-509 27-51 (192)
468 4djt_A GTP-binding nuclear pro 93.0 0.031 1.1E-06 54.4 1.7 21 489-509 13-33 (218)
469 3reg_A RHO-like small GTPase; 92.9 0.039 1.3E-06 52.5 2.4 22 489-510 25-46 (194)
470 1zd9_A ADP-ribosylation factor 92.9 0.04 1.4E-06 52.3 2.4 21 489-509 24-44 (188)
471 2atv_A RERG, RAS-like estrogen 92.9 0.04 1.4E-06 52.6 2.4 22 488-509 29-50 (196)
472 3bwd_D RAC-like GTP-binding pr 92.9 0.046 1.6E-06 51.1 2.8 23 487-509 8-30 (182)
473 1x3s_A RAS-related protein RAB 92.9 0.04 1.4E-06 52.1 2.4 21 489-509 17-37 (195)
474 3cph_A RAS-related protein SEC 92.9 0.04 1.4E-06 53.1 2.4 22 488-509 21-42 (213)
475 2p5s_A RAS and EF-hand domain 92.8 0.041 1.4E-06 52.7 2.4 24 486-509 27-50 (199)
476 1ojl_A Transcriptional regulat 92.8 0.15 5.2E-06 52.8 6.9 29 484-512 22-50 (304)
477 2aka_B Dynamin-1; fusion prote 92.7 0.045 1.5E-06 56.2 2.6 23 489-511 28-50 (299)
478 2iwr_A Centaurin gamma 1; ANK 92.7 0.034 1.2E-06 51.9 1.5 21 489-509 9-29 (178)
479 2wsm_A Hydrogenase expression/ 92.6 0.042 1.4E-06 53.6 2.2 23 488-510 31-53 (221)
480 2x77_A ADP-ribosylation factor 92.6 0.045 1.5E-06 51.8 2.3 24 486-509 21-44 (189)
481 3pvs_A Replication-associated 92.6 0.018 6.3E-07 63.3 -0.6 120 478-626 39-166 (447)
482 2g3y_A GTP-binding protein GEM 92.6 0.059 2E-06 52.8 3.2 22 489-510 39-60 (211)
483 2gco_A H9, RHO-related GTP-bin 92.5 0.044 1.5E-06 52.7 2.2 21 489-509 27-47 (201)
484 3crm_A TRNA delta(2)-isopenten 92.5 0.055 1.9E-06 56.7 3.0 24 488-511 6-29 (323)
485 3r7w_A Gtpase1, GTP-binding pr 92.4 0.061 2.1E-06 55.9 3.2 25 486-510 2-26 (307)
486 3cmw_A Protein RECA, recombina 92.4 0.28 9.6E-06 61.9 9.5 34 475-508 369-404 (1706)
487 2fh5_B SR-beta, signal recogni 92.4 0.067 2.3E-06 51.8 3.2 22 488-509 8-29 (214)
488 4gzl_A RAS-related C3 botulinu 92.3 0.06 2.1E-06 52.0 2.8 22 487-508 30-51 (204)
489 3umf_A Adenylate kinase; rossm 92.3 0.056 1.9E-06 53.4 2.6 29 483-511 25-53 (217)
490 1qvr_A CLPB protein; coiled co 92.3 0.098 3.4E-06 62.3 5.2 35 488-522 589-624 (854)
491 3foz_A TRNA delta(2)-isopenten 92.3 0.066 2.3E-06 55.6 3.1 25 487-511 10-34 (316)
492 2atx_A Small GTP binding prote 92.2 0.053 1.8E-06 51.6 2.2 21 489-509 20-40 (194)
493 2axn_A 6-phosphofructo-2-kinas 92.1 0.093 3.2E-06 58.8 4.3 26 486-511 34-59 (520)
494 2yc2_C IFT27, small RAB-relate 92.0 0.037 1.2E-06 53.1 0.8 22 489-510 22-43 (208)
495 3cmu_A Protein RECA, recombina 92.0 0.39 1.3E-05 61.5 10.1 26 484-509 380-405 (2050)
496 3eph_A TRNA isopentenyltransfe 91.9 0.067 2.3E-06 57.6 2.8 25 487-511 2-26 (409)
497 2p65_A Hypothetical protein PF 91.9 0.064 2.2E-06 50.2 2.4 29 485-513 41-69 (187)
498 2v3c_C SRP54, signal recogniti 91.9 0.025 8.6E-07 61.9 -0.6 39 487-525 99-137 (432)
499 2hf9_A Probable hydrogenase ni 91.8 0.072 2.5E-06 52.1 2.7 23 488-510 39-61 (226)
500 3l0o_A Transcription terminati 91.8 0.033 1.1E-06 59.5 0.1 52 458-511 137-199 (427)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.4e-112 Score=1056.46 Aligned_cols=580 Identities=37% Similarity=0.639 Sum_probs=520.4
Q ss_pred CchhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 119 TEVPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRS 198 (703)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (703)
....+++++.+.+|+|+.++++++++++.+.+.|.+++++...++.+...+........+|+++|++++++..++.+++.
T Consensus 736 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~ 815 (1321)
T 4f4c_A 736 QKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMT 815 (1321)
T ss_dssp CCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999887654434445667889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 199 YFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEAN 278 (703)
Q Consensus 199 ~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 278 (703)
+++.+.+.++..++|.++|++++++|++|||.+++++|++++|+++|++.++..+...+..++..++.++++++++++++
T Consensus 816 ~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~ 895 (1321)
T 4f4c_A 816 FFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYG 895 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHh
Confidence 99999999999999999999999999999997778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHH
Q 005314 279 WQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQ 358 (703)
Q Consensus 279 ~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~ 358 (703)
|++++++++++|++++..++..++......+..+..++....+.|+++|+++||+|++|+.+.++|.+..+...+...+.
T Consensus 896 ~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 975 (1321)
T 4f4c_A 896 WQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKE 975 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888777777667777778888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005314 359 GLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEV--FRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAIL 436 (703)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il 436 (703)
..+.++..++..++..+..++++++|+.++..+..+++.+ +.++.++.....++..+..+++++.++..+.+|+++++
T Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l 1055 (1321)
T 4f4c_A 976 AFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGML 1055 (1321)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888776544 44444444445567778888999999999999999999
Q ss_pred cccccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC
Q 005314 437 DRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG 516 (703)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G 516 (703)
+.+++.+.....+ ...+..|+|+|+||+|+||++++.+||+|+||+|+|||+|||||+||||||||+++|+|||+|++|
T Consensus 1056 ~~~~~~~~~~~~~-~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1134 (1321)
T 4f4c_A 1056 RKISKIDSLSLAG-EKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134 (1321)
T ss_dssp HCCCSSCTTCCCS-BCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSS
T ss_pred hCcccCCCccCCC-CCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCC
Confidence 9887755433222 223456899999999999988888999999999999999999999999999999999999999999
Q ss_pred eEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCC-CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCC
Q 005314 517 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGK-EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGER 595 (703)
Q Consensus 517 ~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~-~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~ 595 (703)
+|+|||+|++++++++||++|++|||||+||+|||||||+||. +++++++||++||+.|++||||++||+||||+|||+
T Consensus 1135 ~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1135 EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp EEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred EEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 9999999999999999999999999999999999999999995 457899999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEE
Q 005314 596 GIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIA 675 (703)
Q Consensus 596 G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Iv 675 (703)
|.+|||||||||||||||+|||+||||||||||||++||+.|+++|++..++||+|+|||||+|+++||+|+|||+|+|+
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~Iv 1294 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTII 1294 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEE
T ss_pred CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHhccCCcHHHHHHHhhhc
Q 005314 676 EKGKHETLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 676 e~Gth~eLl~~~~g~Y~~l~~~q~~ 700 (703)
|+|||+||+++ +|.|++||+.|..
T Consensus 1295 E~Gth~eLl~~-~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1295 EKGTHTQLMSE-KGAYYKLTQKQMT 1318 (1321)
T ss_dssp EEECHHHHHHC-C------------
T ss_pred EECCHHHHHhC-CcHHHHHHHHHHh
Confidence 99999999997 9999999999864
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.7e-108 Score=1022.05 Aligned_cols=578 Identities=38% Similarity=0.644 Sum_probs=540.0
Q ss_pred CCchhHHHHhHhhCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------chhhhhhHH
Q 005314 118 PTEVPLCRLASLNKPE-IPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEP-------------------ADELRKDTD 177 (703)
Q Consensus 118 ~~~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~-------------------~~~~~~~~~ 177 (703)
.++++++++|+|..+. +..+++|++++++.|+..|+++++++.+++.+... ...+.....
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred cCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHH
Confidence 4557899999987654 66778899999999999999999999988876321 011223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHH
Q 005314 178 FWALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDAL 257 (703)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~ 257 (703)
.+++.+++++++.+++.+++.+++.++|+++..++|.++|+|++++|++|||+ +++|++++|+++|++.++.+++..+
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~--~~~G~l~sr~~~D~~~i~~~~~~~l 214 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT--NHSGTLATKLFDNLERVKEGTGDKI 214 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH--TCCTTHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888899999999999999999999999999999999999999995 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCch
Q 005314 258 GLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAE 337 (703)
Q Consensus 258 ~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e 337 (703)
+.++..+++++++++++|+++|++++++++++|+++++..+..+++++...+.++..++..+.+.|.++|+++||+|++|
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 294 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 338 EKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGI 417 (703)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~ 417 (703)
+.+.++|.+..++..+...+...+.++..++..++..+.+++++|+|++++.+|.+++|.+++++.++.....|+..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~ 374 (1321)
T 4f4c_A 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGP 374 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCC
Q 005314 418 LAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESG 497 (703)
Q Consensus 418 ~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SG 497 (703)
.+..+.++..+++|++++++.+++.+.....+.......|+|+|+||+|+||+++++++|+|+||+|+|||++|||||||
T Consensus 375 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sG 454 (1321)
T 4f4c_A 375 QLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCC
Confidence 99999999999999999999887765444333333456789999999999998888899999999999999999999999
Q ss_pred CChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcH
Q 005314 498 SGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANA 577 (703)
Q Consensus 498 sGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l 577 (703)
||||||+++|+|+|+|++|+|++||+|+++++.++||++||||+|||+||++||||||+|| .++++++++++||+.|++
T Consensus 455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g-~~~~~~~~v~~a~~~a~l 533 (1321)
T 4f4c_A 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG-KEGITREEMVAACKMANA 533 (1321)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTT-CTTCCHHHHHHHHHHTTC
T ss_pred CcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhh-cccchHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 668999999999999999
Q ss_pred HHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCc
Q 005314 578 HQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRL 657 (703)
Q Consensus 578 ~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrl 657 (703)
|+||+.||+||||.|||+|.+||||||||||||||+|+||+||||||||||||+++|+.|+++|++++++||+|+||||+
T Consensus 534 ~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrl 613 (1321)
T 4f4c_A 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRL 613 (1321)
T ss_dssp HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCT
T ss_pred hhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhhh
Q 005314 658 STIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 658 sti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q~ 699 (703)
+++++||+|+||++|+|+|+|||+||+++ +|.|++|++.|.
T Consensus 614 s~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 614 STIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 99999999999999999999999999996 999999998874
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-98 Score=864.56 Aligned_cols=570 Identities=27% Similarity=0.374 Sum_probs=522.9
Q ss_pred HHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 123 LCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYFFA 202 (703)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (703)
+++++++.+++|+.++++++++++.+++.++.|++++.+++.+....+ ......+++++++++++..++.+++.++..
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--FSLVLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899999999999999999999999999999999998754221 122334555566667777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 203 VAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQLA 282 (703)
Q Consensus 203 ~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~la 282 (703)
+.+.++..++|..+|+|++++|+.||++ +++|++++|+++|++.++.++...+..++..++.++++++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 166 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLS 166 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985 78999999999999999999999999999899899898999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHHHH
Q 005314 283 LIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGLIG 362 (703)
Q Consensus 283 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (703)
+++++++|++++...+..++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...+.
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (587)
T 3qf4_A 167 SVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888898888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 005314 363 GVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKI 442 (703)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~ 442 (703)
+...++..++..+..++++|+|++++.+|.+++|.+++++.+......|+..+...+..+.++..+++|++++++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 326 (587)
T 3qf4_A 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAI 326 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977654
Q ss_pred CCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC
Q 005314 443 DSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG 522 (703)
Q Consensus 443 ~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG 522 (703)
..... ....+...+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 327 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 327 EEADN-ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCTT-CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred CCCCC-ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 32211 11222345789999999999854 46899999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 523 VEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 523 ~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
+|+++++.+++|++|+||||+|+||++||+|||.+| .++.++++++++++.+++++++..||+||||.+|++|.+||||
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgG 483 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG-REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGG 483 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTT-CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHH
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhcc-CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHH
Confidence 999999999999999999999999999999999999 5578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhH
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~e 682 (703)
|||||||||||+++|+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+|++|++|+|+|+|+|+|
T Consensus 484 qrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhccCCcHHHHHHHhhhc
Q 005314 683 LVHVKDGIYASLVALQTS 700 (703)
Q Consensus 683 Ll~~~~g~Y~~l~~~q~~ 700 (703)
|+++ +|.|+++++.|..
T Consensus 564 l~~~-~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 564 LLEH-CKPYREIYESQFG 580 (587)
T ss_dssp HHHH-CHHHHHHHHHHC-
T ss_pred HHhC-CcHHHHHHHHHhc
Confidence 9986 9999999998854
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-98 Score=864.06 Aligned_cols=571 Identities=30% Similarity=0.464 Sum_probs=528.1
Q ss_pred chhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 120 EVPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSY 199 (703)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (703)
...+++++++.+++++.++++++++++.+++.++.|++++.+++.+..+.+ ......+++++++++++..++.+++.+
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--FDLLPRYMLILGTIYALTSLLFWLQGK 99 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--GGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999998764321 223445566666777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 200 FFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANW 279 (703)
Q Consensus 200 ~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 279 (703)
+..+.+.++..++|.++|+|++++|++||++ +++|++++|+++|++.++.++...+..++..++.++++++++++++|
T Consensus 100 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 177 (598)
T 3qf4_B 100 IMLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNV 177 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH--SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHH
Q 005314 280 QLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQG 359 (703)
Q Consensus 280 ~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~ 359 (703)
.+++++++++|+++++..+..+..++...+..+..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..
T Consensus 178 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 257 (598)
T 3qf4_B 178 ILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQ 257 (598)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005314 360 LIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRK 439 (703)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~ 439 (703)
.+.++...+..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..+...+..+.++..+++|++++++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 337 (598)
T 3qf4_B 258 IFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLE 337 (598)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999987
Q ss_pred ccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEE
Q 005314 440 SKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHIT 519 (703)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~ 519 (703)
++.+.+ .........++|+++||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 338 ~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 413 (598)
T 3qf4_B 338 EEKDDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL 413 (598)
T ss_dssp CCCCCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEE
T ss_pred CCCCCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEE
Confidence 654321 11222334578999999999974 35799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCC
Q 005314 520 LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQL 599 (703)
Q Consensus 520 idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~L 599 (703)
+||+|+++++.+++|++||||||||++|++||+|||.+| .++.++++++++++.++++++++.+|+||||.+||+|.+|
T Consensus 414 ~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 414 VDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG-NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp ETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSS-STTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred ECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcC-CCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence 999999999999999999999999999999999999999 5578889999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecC
Q 005314 600 SGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 600 SGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gt 679 (703)
|||||||||||||++++|+|||||||||+||+++|+.|++.|.++.+++|+|+||||+++++.||+|++|++|+|+|+|+
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhccCCcHHHHHHHhhhc
Q 005314 680 HETLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 680 h~eLl~~~~g~Y~~l~~~q~~ 700 (703)
|+||+++ +|.|++++..|..
T Consensus 573 ~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 573 HDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp HHHHHHT-TCHHHHHHHHHHG
T ss_pred HHHHHhC-CCHHHHHHHHHhh
Confidence 9999986 9999999988754
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=7.6e-98 Score=858.79 Aligned_cols=571 Identities=30% Similarity=0.446 Sum_probs=522.4
Q ss_pred HHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-hhhhH----HHHHHHHHHHHHHHHHHHHHH
Q 005314 123 LCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADE-LRKDT----DFWALMYLFLAIACLLAHPLR 197 (703)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~ 197 (703)
+++++++.+++++.++++++++++.+++.++.|++++.+++.+....+. ..... ..+++++++++++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999988888889999999999987643210 01111 234444555666777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 198 SYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEA 277 (703)
Q Consensus 198 ~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 277 (703)
.++..+.+.++..++|.++|+|++++|++||++ +++|++++|+++|++.++.++...+..++..++.+++++++++++
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 799999999999999999999888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHH
Q 005314 278 NWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIK 357 (703)
Q Consensus 278 ~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~ 357 (703)
+|++++++++++|++++...+..++.++...+..+..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005314 358 QGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILD 437 (703)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~ 437 (703)
..++.+...++..++..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..+.++..+++|++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCe
Q 005314 438 RKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGH 517 (703)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~ 517 (703)
.+++..... .....+...+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 876543221 111222345789999999999854 467999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCC
Q 005314 518 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGI 597 (703)
Q Consensus 518 I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 597 (703)
|.+||+|+++++.+++|++||||||+|++|++||+|||.+| .++.++++++++++.+++++++..+|+||||.+|++|.
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~ 476 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG-RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGG-CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcC-CCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCC
Confidence 99999999999999999999999999999999999999999 55788999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEe
Q 005314 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEK 677 (703)
Q Consensus 598 ~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~ 677 (703)
+||||||||||||||++++|+|||||||||+||+++|+.+++.++++.+++|+|+||||+++++.||+|++|++|+|+|+
T Consensus 477 ~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVET 556 (578)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cChhHHhccCCcHHHHHHHhhh
Q 005314 678 GKHETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 678 Gth~eLl~~~~g~Y~~l~~~q~ 699 (703)
|+|+||+++ +|.|+++|+.|.
T Consensus 557 g~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 557 GTHRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp ECHHHHHHT-TSHHHHHHTTTT
T ss_pred CCHHHHHhC-CcHHHHHHHhhc
Confidence 999999986 999999998774
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.2e-95 Score=839.40 Aligned_cols=570 Identities=32% Similarity=0.447 Sum_probs=519.8
Q ss_pred hhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYF 200 (703)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (703)
..+++++++.+++++.++++++++++.+++.++.|++++.+++.+....+ ......+++++++++++..++.+++.++
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b5x_A 11 QTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--SNFLRILPFMILGLMFVRGLSGFASSYC 88 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888889998888888888888888889999999999987753211 1112222233555667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 201 FAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQ 280 (703)
Q Consensus 201 ~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 280 (703)
..+.+.++..++|..+|+|++++|+.||++ +++|++++|+++|++.++.++...+..++..++.++++++++++++|+
T Consensus 89 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 89 LSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHH
Q 005314 281 LALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGL 360 (703)
Q Consensus 281 lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 360 (703)
+++++++++|++++...+..+..++...+..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005314 361 IGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKS 440 (703)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~ 440 (703)
..++...+..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..+...+..+.++..+++|++++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE
Q 005314 441 KIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL 520 (703)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i 520 (703)
+.+.. ..+.+...+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 327 ERDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred cCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 43211 11112234689999999999853 257999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 521 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 521 dG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
||+|+++++.+++|++||||||+|++|++|++|||.+|..++.++++++++++.++++++++++|+||||.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS 482 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence 99999999999999999999999999999999999999425678999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecCh
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth 680 (703)
||||||||||||++++|+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhccCCcHHHHHHHhhh
Q 005314 681 ETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 681 ~eLl~~~~g~Y~~l~~~q~ 699 (703)
+||++. ++.|+++++.|.
T Consensus 563 ~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 563 ADLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHHhC-CcHHHHHHHHhh
Confidence 999986 999999999885
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.9e-95 Score=842.05 Aligned_cols=577 Identities=35% Similarity=0.539 Sum_probs=505.5
Q ss_pred hhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPAD-ELRKDTDFWALMYLFLAIACLLAHPLRSY 199 (703)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (703)
..+++++++.+++++.++++++++++.+++.++.|++++.+++.+..... ........++++++++.++..++.+++.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (595)
T 2yl4_A 5 PEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVY 84 (595)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999888888888888888889999999987643211 11111233344455566667788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 200 FFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANW 279 (703)
Q Consensus 200 ~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 279 (703)
+..+.+.++..++|.++|+|++++|++||++ +++|++++|+++|++.++.++...+..++..++.++++++++++++|
T Consensus 85 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 162 (595)
T 2yl4_A 85 LMQTSGQRIVNRLRTSLFSSILRQEVAFFDK--TRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSP 162 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH--SCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHH
Q 005314 280 QLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQG 359 (703)
Q Consensus 280 ~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~ 359 (703)
++++++++++|+++++..+..+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 163 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 242 (595)
T 2yl4_A 163 NLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEA 242 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005314 360 LIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRK 439 (703)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~ 439 (703)
...++..++..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..+...+..+.++..+++|++++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 322 (595)
T 2yl4_A 243 FARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLERE 322 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCCCCCCCccccCCCCc-EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE
Q 005314 440 SKIDSSDESGTTIENVKGD-IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518 (703)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~-I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I 518 (703)
++...... ........++ |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 323 ~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 401 (595)
T 2yl4_A 323 PKLPFNEG-VILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401 (595)
T ss_dssp CSSCSSCS-BCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE
T ss_pred CccCCCCC-CCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE
Confidence 54322111 1111223467 999999999986544579999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCC--CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCC
Q 005314 519 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG--NATEAEVLAAAELANAHQFISSLKQGYDTIVGERG 596 (703)
Q Consensus 519 ~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~--~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G 596 (703)
.+||+|+++++.+++|++|+||||+|.+|++||+|||.+|.+. +.++++++++++.++++++++++|+||||.+|++|
T Consensus 402 ~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~ 481 (595)
T 2yl4_A 402 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG 481 (595)
T ss_dssp EETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSS
T ss_pred EECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCC
Confidence 9999999999999999999999999999999999999999432 27899999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEE
Q 005314 597 IQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAE 676 (703)
Q Consensus 597 ~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive 676 (703)
.+|||||||||||||||+++|+|||||||||+||+++|+.|++.|.++.+++|+|+||||+++++.||+|++|++|+|+|
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 561 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITE 561 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhccCCcHHHHHHHhhhc
Q 005314 677 KGKHETLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 677 ~Gth~eLl~~~~g~Y~~l~~~q~~ 700 (703)
.|+|+||++++++.|+++++.|..
T Consensus 562 ~g~~~~l~~~~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 562 YGKHEELLSKPNGIYRKLMNKQSF 585 (595)
T ss_dssp EECSCC------C-----------
T ss_pred ECCHHHHHhCCChHHHHHHHHhhc
Confidence 999999997448999999988754
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.1e-95 Score=837.11 Aligned_cols=570 Identities=35% Similarity=0.496 Sum_probs=519.8
Q ss_pred hhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELRKDTDFWALMYLFLAIACLLAHPLRSYF 200 (703)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (703)
..+++++++.+++++.++++++++++.+++.++.|++++.+++.+....+ ......++++++++.++..++.+++.++
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--RSVLLWMPLVVIGLMILRGITSYISSYC 88 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--HHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999999998888888888888888899999999987653211 1111122333555667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 201 FAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEANWQ 280 (703)
Q Consensus 201 ~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 280 (703)
..+.+.++..++|.++|+|++++|+.||++ +++|++++|+++|++.++.++...+..++..++.+++.++++++++|+
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 89 ISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHHHH
Q 005314 281 LALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQGL 360 (703)
Q Consensus 281 lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 360 (703)
+++++++++|++++...+..+..++...+..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005314 361 IGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKS 440 (703)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~ 440 (703)
..++...+..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..+...+..+.++..+++|++++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE
Q 005314 441 KIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL 520 (703)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i 520 (703)
+... . ..+.+...+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 327 ~~~~-~--~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDE-G--KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCC-C--CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccC-C--CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 5321 1 11112234689999999999743 257999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCC
Q 005314 521 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLS 600 (703)
Q Consensus 521 dG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 600 (703)
||+|+++++.+++|++|+||||+|.+|++|++|||.+|..++.++++++++++.++++++++++|+||||.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 99999999999999999999999999999999999999425678999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecCh
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth 680 (703)
||||||||||||++++|+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhccCCcHHHHHHHhhh
Q 005314 681 ETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 681 ~eLl~~~~g~Y~~l~~~q~ 699 (703)
+||++. ++.|+++++.|.
T Consensus 563 ~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b60_A 563 SELLAQ-HGVYAQLHKMQF 580 (582)
T ss_dssp HHHHHH-TSSHHHHHHHTC
T ss_pred HHHHHc-CCHHHHHHHHhc
Confidence 999986 999999999885
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8e-97 Score=915.29 Aligned_cols=576 Identities=40% Similarity=0.682 Sum_probs=530.1
Q ss_pred chhHHHHhHhhC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch------------------hhhhhHHHHH
Q 005314 120 EVPLCRLASLNK-PEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPAD------------------ELRKDTDFWA 180 (703)
Q Consensus 120 ~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~------------------~~~~~~~~~~ 180 (703)
...++++++|.. ++|..++++++++++.+++.|+.+++++.+++.+..... ........|+
T Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1284)
T 3g5u_A 32 AVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111 (1284)
T ss_dssp -CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHH
Confidence 355778888775 467788889999999999999999999999887642110 0112344577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHH
Q 005314 181 LMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLH 260 (703)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~ 260 (703)
+++++++++.+++.+++.+++.+.+.++..++|.++|+|++++|++||++ +++|++++|+++|++.++..+...+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~--~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS--CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888889999999999999999999999999999999999999995 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHH
Q 005314 261 VQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKV 340 (703)
Q Consensus 261 ~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~ 340 (703)
+..+++++++++++++++|++++++++++|+++++..+..+..++...+.++..++....+.|.++|+++||+|++|+++
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 341 MELYQKKCGGPSKKGIKQGLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAP 420 (703)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~ 420 (703)
.++|.+..++..+..++...+.++..++..++.++.+++++|+|++++..|.+++|.++++++++.....++.++...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888889999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCCh
Q 005314 421 EASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGK 500 (703)
Q Consensus 421 ~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGK 500 (703)
.+.++..+++|++++++.+++++...+.+..++...|.|+|+||+|+||++++.++|+|+||+|+|||++||||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGK 429 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCH
Confidence 99999999999999999876654322222223345689999999999997656789999999999999999999999999
Q ss_pred HHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHH
Q 005314 501 STVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQF 580 (703)
Q Consensus 501 STL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~ 580 (703)
|||+++|+|+|+|++|+|.+||+|+++++++++|++||||+|||+||++||+|||.+| .++++++++++|++.+++++|
T Consensus 430 STl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g-~~~~~~~~~~~~~~~~~~~~~ 508 (1284)
T 3g5u_A 430 STTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG-REDVTMDEIEKAVKEANAYDF 508 (1284)
T ss_dssp HHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHH-CSSCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcC-CCCCCHHHHHHHHHHhCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 557899999999999999999
Q ss_pred HHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH
Q 005314 581 ISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTI 660 (703)
Q Consensus 581 I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti 660 (703)
|.+||+||||.+||+|.+|||||||||||||||+++|+|||||||||+||+++|+.|++++++..+++|+|+||||++++
T Consensus 509 i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHH
T ss_pred HHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhhh
Q 005314 661 RDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 661 ~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q~ 699 (703)
++||+|+||++|+|+|+|+|+||+++ +|.|++++..|.
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT 626 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhh
Confidence 99999999999999999999999996 999999998764
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.5e-96 Score=912.81 Aligned_cols=580 Identities=40% Similarity=0.706 Sum_probs=535.3
Q ss_pred hhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPA--DELRKDTDFWALMYLFLAIACLLAHPLRS 198 (703)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (703)
..+++++++.+++|++++++++++++.+++.|++++++..+++.+.... ........+|++++++++++..++.+++.
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~ 770 (1284)
T 3g5u_A 691 ASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQG 770 (1284)
T ss_dssp CCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999999999999999998775431 12233456677888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 199 YFFAVAGCKLIKRIRSMCFEKVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDALGLHVQNIATLFAGVIIAFEAN 278 (703)
Q Consensus 199 ~~~~~~g~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 278 (703)
+++.+.++++..++|.++|++++++|++||+++++++|++++|+++|++.++.++...+..++..++.+++++++++.++
T Consensus 771 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 850 (1284)
T 3g5u_A 771 FTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYG 850 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHhcHHHHHHHH
Q 005314 279 WQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQKKCGGPSKKGIKQ 358 (703)
Q Consensus 279 ~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e~~~~~~~~~~~~~~~~~~~~~ 358 (703)
|++++++++++|++++..++..+.+++...+..+..++....+.|+++|+++||+|+.|+.+.++|.+..+...+...+.
T Consensus 851 ~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~ 930 (1284)
T 3g5u_A 851 WQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKK 930 (1284)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005314 359 GLIGGVAFGISFFLLYAVYACSFYAGARLVEAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDR 438 (703)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~ 438 (703)
..+.++..++.+.+.++.+++++|+|++++..|.++++.++.++.++.....++..+..+.+++.++..+++|++++++.
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~ 1010 (1284)
T 3g5u_A 931 AHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEK 1010 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999888899999988999999999999999999998
Q ss_pred cccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE
Q 005314 439 KSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518 (703)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I 518 (703)
+++.+........+....|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 1011 ~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I 1090 (1284)
T 3g5u_A 1011 TPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090 (1284)
T ss_dssp CCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE
T ss_pred CCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 76654322222222334688999999999997666689999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCC
Q 005314 519 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGI 597 (703)
Q Consensus 519 ~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 597 (703)
.+||+|+++++.+++|++|+||||||.+|++||+|||.+|.+ ...++++++++++.+++++|+.++|+||||.|||+|.
T Consensus 1091 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A 1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp ESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSC
T ss_pred EECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCC
Confidence 999999999999999999999999999999999999999953 2478999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEe
Q 005314 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEK 677 (703)
Q Consensus 598 ~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~ 677 (703)
+|||||||||||||||+++|+|||||||||+||+++|+.|++.|++..+|+|+|+||||+++++.||+|+||++|+|+|.
T Consensus 1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEE
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhccCCcHHHHHHHhhhcc
Q 005314 678 GKHETLVHVKDGIYASLVALQTSV 701 (703)
Q Consensus 678 Gth~eLl~~~~g~Y~~l~~~q~~~ 701 (703)
|+|+||+++ +|.|++||+.|...
T Consensus 1251 g~~~~l~~~-~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1251 GTHQQLLAQ-KGIYFSMVSVQAGA 1273 (1284)
T ss_dssp ECHHHHHHS-CSHHHHHHHHHC--
T ss_pred CCHHHHHhC-CCHHHHHHHHHhhc
Confidence 999999996 99999999988643
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.3e-71 Score=587.74 Aligned_cols=279 Identities=45% Similarity=0.723 Sum_probs=252.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccccCCCCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCC
Q 005314 417 ILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGES 496 (703)
Q Consensus 417 ~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~S 496 (703)
.++.+++++..+++|++++++.+++...... ........+.|+|+||+|+|++ ..++|+|+||+|++||++||||||
T Consensus 13 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 13 GLVPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp ------CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSS
T ss_pred ccchhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCC
Confidence 3567788899999999999987665432211 1112234578999999999974 357999999999999999999999
Q ss_pred CCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhc
Q 005314 497 GSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELAN 576 (703)
Q Consensus 497 GsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~ 576 (703)
|||||||+++|+|+|+|++|+|.+||+|+++++..++|++||||+|+|+||++||+|||.|| ...+++++++++++.++
T Consensus 90 GsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~-~~~~~~~~~~~~~~~~~ 168 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYG-RVTAGNDEVEAAAQAAG 168 (306)
T ss_dssp CHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTT-STTCCHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhh-cccCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999 55688999999999999
Q ss_pred HHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccC
Q 005314 577 AHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHR 656 (703)
Q Consensus 577 l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHr 656 (703)
+++++..+|+||+|.+|++|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|.++.+++|+|+||||
T Consensus 169 l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~ 248 (306)
T 3nh6_A 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248 (306)
T ss_dssp CHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCS
T ss_pred cHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred chHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhhhc
Q 005314 657 LSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQTS 700 (703)
Q Consensus 657 lsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q~~ 700 (703)
++++..||+|+||++|+|++.|+|++|++. +|.|++||+.|..
T Consensus 249 l~~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 249 LSTVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred hHHHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 999999999999999999999999999996 9999999988753
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.3e-59 Score=483.78 Aligned_cols=240 Identities=48% Similarity=0.796 Sum_probs=226.2
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
-+|+++||+|+|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999532 3579999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 537 MGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 537 i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
||||+|+|.+|++|++|||.++ ....+++++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLA-NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTT-CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCccccccHHHHHhcc-CCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998 445678889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHH
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~ 696 (703)
|+|||||||||+||+.+++.|.+.|.++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++++.+.+.|++++.
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 99999999999999999999999999887799999999999999899999999999999999999998755789999987
Q ss_pred hh
Q 005314 697 LQ 698 (703)
Q Consensus 697 ~q 698 (703)
.|
T Consensus 244 ~~ 245 (247)
T 2ff7_A 244 LQ 245 (247)
T ss_dssp HH
T ss_pred hh
Confidence 66
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.1e-58 Score=480.25 Aligned_cols=242 Identities=43% Similarity=0.755 Sum_probs=226.5
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
+.|+++||+|+|++.+..++|+|+||+|++|+++||+||||||||||+++|+|+++| +|+|.+||+++.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 569999999999753235799999999999999999999999999999999999987 8999999999999998899999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 537 MGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 537 i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
|+||+|+|.+|+.|++|||.++ ....+++++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~-~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYG-KLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTT-CTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcccccCHHHHHhcc-CCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999998 334567889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHH
Q 005314 617 PKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVA 696 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~ 696 (703)
|+|||||||||+||+++++.+.+.|.++.+++|+|+|||+++.++.||+|++|++|+|++.|+++++++. ++.|.+++.
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 252 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWN 252 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHH
Confidence 9999999999999999999999999998788999999999999989999999999999999999999986 889999998
Q ss_pred hhhcc
Q 005314 697 LQTSV 701 (703)
Q Consensus 697 ~q~~~ 701 (703)
.|...
T Consensus 253 ~~~~~ 257 (260)
T 2ghi_A 253 MQSGG 257 (260)
T ss_dssp HHHC-
T ss_pred hhhhh
Confidence 77543
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6.3e-58 Score=477.31 Aligned_cols=242 Identities=44% Similarity=0.699 Sum_probs=223.3
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhc
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~ 535 (703)
.+.|+++||+|+|+++++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35799999999997522357999999999999999999999999999999999999999999999999999888888999
Q ss_pred ceEEEccCCCCCcccHHHHHhcCCCCCCCH-HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 536 QMGLVSQEPVLFNDTVRVNIAYGKEGNATE-AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 536 ~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~-~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
+|+||+|+|.+|..|++|||.++. ...++ +++.++++.+++++++..+|+|+++.+++++.+||||||||++|||||+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTC-SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCccccccHHHHHhhhc-ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999983 33333 6788888899999999999999999999999999999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHH
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYA 692 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~ 692 (703)
++|+|||||||||+||+.+++.|.+.|.++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~ 251 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHH
Confidence 99999999999999999999999999998754 8999999999999988999999999999999999999986 89999
Q ss_pred HHHHhhh
Q 005314 693 SLVALQT 699 (703)
Q Consensus 693 ~l~~~q~ 699 (703)
+++..+.
T Consensus 252 ~~~~~~~ 258 (271)
T 2ixe_A 252 SMVEALA 258 (271)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 9998764
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-58 Score=475.71 Aligned_cols=239 Identities=46% Similarity=0.768 Sum_probs=224.2
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 357999999999999999999999999999999999999999999999999999888778899999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
||||+|.+|.+|++|||.++.....+++++.++++.+++++++..+|+|++|.+++++.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998323467788999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhh
Q 005314 619 ILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQ 698 (703)
Q Consensus 619 ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q 698 (703)
|||||||||+||+++++.+.+.|.++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.+++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~ 238 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHhh
Confidence 99999999999999999999999987778999999999999989999999999999999999999986 78899999876
Q ss_pred hc
Q 005314 699 TS 700 (703)
Q Consensus 699 ~~ 700 (703)
..
T Consensus 239 ~~ 240 (243)
T 1mv5_A 239 LT 240 (243)
T ss_dssp CC
T ss_pred hc
Confidence 53
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-55 Score=477.13 Aligned_cols=234 Identities=26% Similarity=0.461 Sum_probs=220.5
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhc
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~ 535 (703)
.+.|+++||+|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+.+++.+.+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 4689999999999743 4579999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 536 QMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 536 ~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
+||||+|++.||..|++|||.+. . ...++++.++++.+++.+++.++|.+|+|.++++|.+||||||||+||||||++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~-~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPN-A-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTT-C-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCcccCccCHHHHhhhc-c-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999865 2 356889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHH
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYAS 693 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~ 693 (703)
+|+|||||||||+||+.++..+++.|+++.+++|+|+|||+++.+..||+|+||++|+|++.|+++|+++++...|..
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 999999999999999999999999999887789999999999999999999999999999999999999876666654
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2e-54 Score=442.49 Aligned_cols=226 Identities=31% Similarity=0.520 Sum_probs=207.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+|+|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 48999999999732 35799999999999999999999999999999999999999999999999 49
Q ss_pred EEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 005314 538 GLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAP 617 (703)
Q Consensus 538 ~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p 617 (703)
+||+|+|.+|+.|++|||.++.. ..+++..++++.+++.+++..+|.|++|.+++++.+||||||||++|||||+++|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC--CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCccc--cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999842 2344567778888888889999999999999999999999999999999999999
Q ss_pred CEEEeeccCcCCCHHHHHHHHHHHH---HHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHH
Q 005314 618 KILLLDEATSALDAESERVIQDALE---RVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASL 694 (703)
Q Consensus 618 ~ILlLDEaTSaLD~~se~~v~~~l~---~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l 694 (703)
+|||||||||+||+++++.+.+.|. ++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.++
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 225 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEF 225 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHH
Confidence 9999999999999999999999994 44568999999999999989999999999999999999999986 8999999
Q ss_pred HHhhhc
Q 005314 695 VALQTS 700 (703)
Q Consensus 695 ~~~q~~ 700 (703)
+..|..
T Consensus 226 ~~~~~~ 231 (237)
T 2cbz_A 226 LRTYAS 231 (237)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 988753
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.1e-54 Score=436.27 Aligned_cols=222 Identities=23% Similarity=0.447 Sum_probs=201.6
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
+.|+++||+|+|+.+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999743 35799999999999999999999999999999999999999999999999 5
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 537 MGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 537 i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
|+||+|+|.+|++|++|||.++.. ..+.++.++++..++.+++..+|.+++|.+++++.+||||||||++|||||+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCcccCCCHHHHhhccCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999832 345566777888899999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCcCCCHHHHHHHHHHH-HHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHH
Q 005314 617 PKILLLDEATSALDAESERVIQDAL-ERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLV 695 (703)
Q Consensus 617 p~ILlLDEaTSaLD~~se~~v~~~l-~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~ 695 (703)
|++||||||||+||+++++.+.+.+ .+..+++|+|+|||+++.++.||+|++|++|+|++.|+++++++. .+.|.+++
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 227 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSKL 227 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHHH
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHh
Confidence 9999999999999999999999974 555568999999999999988999999999999999999999875 66777665
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.9e-51 Score=416.38 Aligned_cols=219 Identities=24% Similarity=0.412 Sum_probs=191.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH-hcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL-RQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l-R~~ 536 (703)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 479999999999999999999999999999999999999999999999999998887655 556
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
|+||+|++.+|.+ |++|||.++.....+.++..+. +.++++.++ |++...+....+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999973122222233322 234566665 57777788889999999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhc
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
+|+|||||||||+||+.+.+.+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999998875 589999999999876 5699999999999999999999975
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.6e-51 Score=425.44 Aligned_cols=216 Identities=27% Similarity=0.456 Sum_probs=186.6
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC--CCCHHHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ--KLQLKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~--~~~~~~lR~ 535 (703)
-|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999743 46999999999999999999999999999999999999999999999999994 344567899
Q ss_pred ceEEEccCC--CCCcccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 536 QMGLVSQEP--VLFNDTVRVNIAYGKE-GNATEAE----VLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 536 ~i~~V~Qe~--~LF~gTIreNI~~g~~-~~~t~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
+||||+|+| .+|..|++|||.++.. ...+.++ +.++++..+ ++........+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTG-----------IEHLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-----------CGGGTTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcCCcccCCHHHHHHHH
Confidence 999999998 5889999999998731 1233433 344444443 444445566789999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||||+.+|+|||||||||+||+.+.+.+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|+|++.|+.+++++
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 38999999999999864 99999999999999999999986
Q ss_pred c
Q 005314 686 V 686 (703)
Q Consensus 686 ~ 686 (703)
.
T Consensus 234 ~ 234 (275)
T 3gfo_A 234 E 234 (275)
T ss_dssp H
T ss_pred C
Confidence 4
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.6e-51 Score=435.65 Aligned_cols=227 Identities=32% Similarity=0.475 Sum_probs=194.6
Q ss_pred CcEEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH---
Q 005314 457 GDIEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW--- 532 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~--- 532 (703)
.-|+++||+++|+.+. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||+|+..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3699999999997432 356999999999999999999999999999999999999999999999999999998765
Q ss_pred HhcceEEEccCCCCCcc-cHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 533 LRQQMGLVSQEPVLFND-TVRVNIAYGKE-GNATEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 533 lR~~i~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
+|++||||||++.||.. |++|||.++.. ...+.+ ++.++++..+ +.........+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vg-----------L~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG-----------LGDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT-----------CGGGTTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CchHhcCChhhCCHHHHHH
Confidence 48899999999999876 99999998621 122333 3444444444 3334456678999999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHH
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eL 683 (703)
++|||||+.+|+|||||||||+||+.+.+.|.+.|+++. .|.|+|+|||+++.+.. ||+|+||++|+|++.|+.+++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998874 38999999999999865 999999999999999999999
Q ss_pred hccCCcHHHHH
Q 005314 684 VHVKDGIYASL 694 (703)
Q Consensus 684 l~~~~g~Y~~l 694 (703)
+..+...|.+-
T Consensus 252 ~~~p~~~~~~~ 262 (366)
T 3tui_C 252 FSHPKTPLAQK 262 (366)
T ss_dssp HSSCCSHHHHH
T ss_pred HhCCCcHHHHH
Confidence 98666666543
No 22
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2e-51 Score=419.67 Aligned_cols=215 Identities=29% Similarity=0.466 Sum_probs=181.8
Q ss_pred EEEEEEEEEcCCCC-CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH----
Q 005314 459 IEFQHITFKYPARP-DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL---- 533 (703)
Q Consensus 459 I~~~~vsF~Y~~~~-~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l---- 533 (703)
|+++||+|+|+.++ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2469999999999999999999999999999999999999999999999999999987664
Q ss_pred hcceEEEccCCCCCcc-cHHHHHhcCC----CCCCCHH----HHHHHHHHhcHHHHHHHhhccccch-hcCCCCCCChhH
Q 005314 534 RQQMGLVSQEPVLFND-TVRVNIAYGK----EGNATEA----EVLAAAELANAHQFISSLKQGYDTI-VGERGIQLSGGQ 603 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~g-TIreNI~~g~----~~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~-vGe~G~~LSGGQ 603 (703)
|++||||+|+|.+|.. |++|||.++. ......+ ++.++++..+ +... ......+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE-----------LEERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTT-----------CCGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCC-----------CChhhhhCChhhCCHHH
Confidence 4579999999999987 9999998741 1122232 2334444433 3222 246678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCEEEEecChh
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~ 681 (703)
|||++|||||+.+|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.++.||+|++|++|+|++.|+-+
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 9999999999999999999999999999999999999988753 89999999999988889999999999999999877
Q ss_pred HHh
Q 005314 682 TLV 684 (703)
Q Consensus 682 eLl 684 (703)
++-
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 653
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.9e-50 Score=417.17 Aligned_cols=214 Identities=28% Similarity=0.415 Sum_probs=189.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 589999999996 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC-CcccHHHHHhcCCCC---CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 538 GLVSQEPVL-FNDTVRVNIAYGKEG---NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 538 ~~V~Qe~~L-F~gTIreNI~~g~~~---~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
+||+|++.+ |..|++|||.++... ...++++.++++..++.++ ......+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLAL-----------AQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTT-----------TTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHHHHHHHH
Confidence 999999987 678999999998421 2234556666666655332 2334568999999999999999
Q ss_pred cc------CCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHh
Q 005314 614 VK------APKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 614 lk------~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
+. +|++||||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988743 469999999999986 59999999999999999999998
Q ss_pred c
Q 005314 685 H 685 (703)
Q Consensus 685 ~ 685 (703)
+
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 5
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.8e-49 Score=411.18 Aligned_cols=221 Identities=32% Similarity=0.463 Sum_probs=188.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC--CCCHHHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ--KLQLKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~--~~~~~~lR~ 535 (703)
.|+++||+|+|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 599999999996 347999999999999999999999999999999999999999999999999985 345667889
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCC--CCCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 536 QMGLVSQEPVLFND-TVRVNIAYGK--EGNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 536 ~i~~V~Qe~~LF~g-TIreNI~~g~--~~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
+|+||+|++.+|.. |++|||.++. ....+. +++.++++..+ ++........+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-----------LKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-----------CGGGTTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------CchHhcCChhhCCHHHHHHHH
Confidence 99999999999987 9999998852 112222 23444444443 333445566799999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|||||+.+|++||||||||+||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+|++.|+.+++++.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998874 4899999999999986 5999999999999999999999865
Q ss_pred CCcHHH
Q 005314 687 KDGIYA 692 (703)
Q Consensus 687 ~~g~Y~ 692 (703)
+...|.
T Consensus 250 ~~~~~~ 255 (263)
T 2olj_A 250 PQHERT 255 (263)
T ss_dssp CCSHHH
T ss_pred cccHHH
Confidence 333443
No 25
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.7e-50 Score=421.82 Aligned_cols=218 Identities=24% Similarity=0.454 Sum_probs=183.4
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhc
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~ 535 (703)
.+.|+++||+|.| .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3579999999964 3699999999999999999999999999999999999999999999998
Q ss_pred ceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 536 QMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 536 ~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
+|+||+|++.+|.+|++|||. +.. ..+..+.++++..++.+++..+|.+++|.+++++.+||||||||++|||||++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~ 176 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 176 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC--CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc--cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHC
Confidence 599999999999999999998 622 33456677788889999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHH-HHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHH
Q 005314 616 APKILLLDEATSALDAESERVIQDAL-ERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASL 694 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l-~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l 694 (703)
+|++||||||||+||+.+++.+.+.+ .++.+++|+|+|||++..+..||+|++|++|++++.|+++++++. .+.|.+.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 255 (290)
T 2bbs_A 177 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-RPDFSSK 255 (290)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH-CHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh-cHHHHHH
Confidence 99999999999999999999999874 455568999999999999989999999999999999999999864 5556554
Q ss_pred H
Q 005314 695 V 695 (703)
Q Consensus 695 ~ 695 (703)
+
T Consensus 256 ~ 256 (290)
T 2bbs_A 256 L 256 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5e-50 Score=430.02 Aligned_cols=224 Identities=33% Similarity=0.532 Sum_probs=189.1
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC--CCHHHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK--LQLKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~--~~~~~lR~ 535 (703)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ .+....++
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999996 3579999999999999999999999999999999999999999999999999933 22335678
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 536 QMGLVSQEPVLFND-TVRVNIAYGKEG-NAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 536 ~i~~V~Qe~~LF~g-TIreNI~~g~~~-~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
+||||+|++.||.. |++|||.|+... ... ++++.++++..++. ........+||||||||+||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-----------ELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-----------GGTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHH
Confidence 99999999999965 999999998421 111 23455555555543 33445567899999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhcc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
||||+.+|++||||||||+||+.+...+++.|.++. .|.|+|+|||+++.+. .||||+||++|+|++.|+.+++++.
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998776653 4899999999999875 5999999999999999999999986
Q ss_pred CCcHHHHHH
Q 005314 687 KDGIYASLV 695 (703)
Q Consensus 687 ~~g~Y~~l~ 695 (703)
+...|...+
T Consensus 230 p~~~~~a~~ 238 (359)
T 3fvq_A 230 PADLDAALF 238 (359)
T ss_dssp CSCHHHHHH
T ss_pred cccHHHHHh
Confidence 565555443
No 27
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-49 Score=412.87 Aligned_cols=221 Identities=27% Similarity=0.426 Sum_probs=187.5
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC----------
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK---------- 527 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~---------- 527 (703)
.|+++||+|+|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 489999999996 3479999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhcceEEEccCCCCCcc-cHHHHHhcCC--CCCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCC
Q 005314 528 LQL---KWLRQQMGLVSQEPVLFND-TVRVNIAYGK--EGNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGI 597 (703)
Q Consensus 528 ~~~---~~lR~~i~~V~Qe~~LF~g-TIreNI~~g~--~~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 597 (703)
++. ..+|++||||+|++.+|.. |++|||.++. ....+ ++++.++++..++.+++ ......
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~ 152 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV 152 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCcc
Confidence 443 3568899999999999877 9999998852 11122 23455555555554431 344567
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEE
Q 005314 598 QLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIA 675 (703)
Q Consensus 598 ~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Iv 675 (703)
+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|.++. +|+|+|+|||+++.+. .||+|++|++|+|+
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998864 4899999999999986 59999999999999
Q ss_pred EecChhHHhccCCcHH
Q 005314 676 EKGKHETLVHVKDGIY 691 (703)
Q Consensus 676 e~Gth~eLl~~~~g~Y 691 (703)
+.|+.+++++.+...|
T Consensus 233 ~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 233 EEGDPEQVFGNPQSPR 248 (262)
T ss_dssp EEECHHHHHHSCCSHH
T ss_pred EeCCHHHHHhCcchHH
Confidence 9999999986433344
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-49 Score=412.51 Aligned_cols=214 Identities=27% Similarity=0.474 Sum_probs=188.0
Q ss_pred EEEEEEEEEcCCCCC--cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 459 IEFQHITFKYPARPD--VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~--~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
|+++||+|+|+.... .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|+++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 799999999962111 4799999999999999999999999999999999999999999999999998753 67889
Q ss_pred eEEEccCC--CCCcccHHHHHhcCCC----CCCCHHHHHHHHHHhcHH--HHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 537 MGLVSQEP--VLFNDTVRVNIAYGKE----GNATEAEVLAAAELANAH--QFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 537 i~~V~Qe~--~LF~gTIreNI~~g~~----~~~t~~ei~~A~~~a~l~--~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
||||+|+| .+|..|++|||.++.. .+..++++.++++..++. ++..+. ..+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV-----------PFFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCC-----------GGGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCC-----------hhhCCHHHHHHHH
Confidence 99999996 5788999999998731 112356688888888876 554443 3689999999999
Q ss_pred HHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhcc
Q 005314 609 IARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 609 IARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
|||||+.+|+|||||||||+||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998874 58999999999999875 999999999999999999999864
No 29
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-49 Score=409.99 Aligned_cols=214 Identities=24% Similarity=0.411 Sum_probs=186.6
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
+.|+++||+|+|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5799999999996 3579999999999999999999999999999999999999999999999999976 56778899
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
||||+|++.+|.. |++|||.++.. ...+. +++.++++..++. ........+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----------EKIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----------GGGGSBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-----------hHhcCChhhCCHHHHHHHHHH
Confidence 9999999999887 99999988521 01222 3345555555443 333445678999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|||+.+|+|||||||||+||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999998875 58999999999999876 99999999999999999999975
No 30
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.2e-49 Score=429.69 Aligned_cols=222 Identities=29% Similarity=0.456 Sum_probs=191.4
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.. ++.|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999996 35799999999999999999999999999999999999999999999999999988765 4789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKE-GNATEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||+|++.||.. |++|||.|+.. ...+.+ ++.++++..++ +........+||||||||+||||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----------~~~~~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-----------AHLLDRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC-----------GGGTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhHCCHHHHHHHHHHH
Confidence 999999999965 99999999731 123333 34455555544 33444566799999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhccCC
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~~ 688 (703)
||+.+|+|||||||||+||+.+...+.+.|.++.+ |.|+|+|||++..+. .||+|+||++|+|++.|+.+++.+.+.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 99999999999999999999999999999988743 899999999999875 599999999999999999999998766
Q ss_pred cHHHHHH
Q 005314 689 GIYASLV 695 (703)
Q Consensus 689 g~Y~~l~ 695 (703)
..|...+
T Consensus 227 ~~~v~~~ 233 (381)
T 3rlf_A 227 DRFVAGF 233 (381)
T ss_dssp BHHHHHH
T ss_pred cHHHHHh
Confidence 6665443
No 31
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.1e-49 Score=404.15 Aligned_cols=209 Identities=26% Similarity=0.368 Sum_probs=179.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH---Hh
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW---LR 534 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~---lR 534 (703)
.|+++||+|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 57999999999999999999999999999999999999999999999999998887543 44
Q ss_pred -cceEEEccCCCCCc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 535 -QQMGLVSQEPVLFN-DTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 535 -~~i~~V~Qe~~LF~-gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
++|+||+|++.+|. .|++|||.++.. ..... +++.++++.. |++........+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-----------GLGDKLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT-----------TCTTCTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHH
Confidence 78999999999987 499999988621 11121 2334444443 344444556679999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCEEEEecCh
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth 680 (703)
+|||||+.+|++||||||||+||+.+.+.+.+.|.++. +++|+|+|||+++.++.||+|++|++|++++.|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999998874 48999999999999888999999999999999873
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.7e-49 Score=407.69 Aligned_cols=215 Identities=24% Similarity=0.389 Sum_probs=185.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH-HHHhcc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL-KWLRQQ 536 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~-~~lR~~ 536 (703)
.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. +.+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 479999999999999999999999999999999999999999999999999988765 456789
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCCC---C-----------CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 537 MGLVSQEPVLFN-DTVRVNIAYGKEG---N-----------ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 537 i~~V~Qe~~LF~-gTIreNI~~g~~~---~-----------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
|+||+|++.+|. .|++|||.++... . .+.++.. ..+.++++.+ |++........+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999886 5999999987321 1 1111111 1234445555 666667778889999
Q ss_pred hHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCEEEEecC
Q 005314 602 GQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 602 GQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gt 679 (703)
|||||++|||||+.+|+|||||||||+||+.+.+.+.+.|.++. +|+|+|+|||+++.+. .||+|++|++|+|++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999998864 4899999999999875 699999999999999999
Q ss_pred hhH
Q 005314 680 HET 682 (703)
Q Consensus 680 h~e 682 (703)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 999
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-48 Score=420.98 Aligned_cols=219 Identities=31% Similarity=0.499 Sum_probs=189.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 489999999996 35799999999999999999999999999999999999999999999999999887653 6889
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEG-NAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~-~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||+|++.||.. |++|||.|+... ..+ ++++.++++..++.++. ..+..+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLL-----------DRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999998321 122 23466666666654443 3344689999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccCC
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~~ 688 (703)
||+.+|++||||||||+||+.+.+.+.+.|.++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|+.+++++.+.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988743 89999999999987 5699999999999999999999987655
Q ss_pred cHHH
Q 005314 689 GIYA 692 (703)
Q Consensus 689 g~Y~ 692 (703)
..|.
T Consensus 227 ~~~~ 230 (359)
T 2yyz_A 227 NMFV 230 (359)
T ss_dssp BHHH
T ss_pred cHHH
Confidence 4554
No 34
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.7e-49 Score=423.01 Aligned_cols=219 Identities=36% Similarity=0.524 Sum_probs=188.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 489999999996 34799999999999999999999999999999999999999999999999999887653 6789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||+|++.||.. |++|||.|+.. ...+. +++.++++..++.++ ...+..+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKL-----------LNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTC-----------TTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hhCChhhCCHHHHHHHHHHH
Confidence 999999999975 99999999721 11222 345566666555433 33445689999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccCC
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~~ 688 (703)
||+.+|++||||||||+||+.+...+.+.|.++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|+.+++++.+.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988743 89999999999987 5699999999999999999999987655
Q ss_pred cHHH
Q 005314 689 GIYA 692 (703)
Q Consensus 689 g~Y~ 692 (703)
..|.
T Consensus 227 ~~~~ 230 (362)
T 2it1_A 227 YKFV 230 (362)
T ss_dssp BHHH
T ss_pred chHH
Confidence 4553
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.6e-49 Score=410.06 Aligned_cols=215 Identities=25% Similarity=0.354 Sum_probs=184.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC--CCCHHHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ--KLQLKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~--~~~~~~lR~ 535 (703)
.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999963 47999999999999999999999999999999999999999999999999998 778888999
Q ss_pred ceEEEccCCCC-Ccc--cHHHHHhcCCCC------CCCH---HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 536 QMGLVSQEPVL-FND--TVRVNIAYGKEG------NATE---AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 536 ~i~~V~Qe~~L-F~g--TIreNI~~g~~~------~~t~---~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
+||||+|++.+ |.. |++|||.++... ...+ +++.++++.. |++........+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-----------GMSAKAQQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHH
Confidence 99999999875 555 999999987311 0122 2334444443 44444556677899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceE--EEEccCchHH-hhcCEEEEEeCCEEEEecC
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTT--VVIAHRLSTI-RDADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~--IvIaHrlsti-~~aD~I~vl~~G~Ive~Gt 679 (703)
|||++|||||+.+|+|||||||||+||+.+.+.+.+.|.++.+ ++|+ |+|||+++.+ +.||+|++|++|+|++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988753 8999 9999999987 5699999999999999999
Q ss_pred hhHHhcc
Q 005314 680 HETLVHV 686 (703)
Q Consensus 680 h~eLl~~ 686 (703)
++++.+.
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9998753
No 36
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.5e-48 Score=399.56 Aligned_cols=209 Identities=22% Similarity=0.329 Sum_probs=187.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+|+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|+++.+.+...+|++|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3899999986 4899999999999999999999999999999999999999 9999999999988888999999
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
+||+|++.+|.. |++|||.++.....+++++.++++..++.++ ......+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998875 9999999983222246667777777665433 3456779999999999999999999
Q ss_pred CC-------EEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhc
Q 005314 617 PK-------ILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 617 p~-------ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|+ +||||||||+||+.+.+.+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++++
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999998874 589999999999998 5699999999999999999999975
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.2e-48 Score=419.68 Aligned_cols=220 Identities=30% Similarity=0.494 Sum_probs=188.4
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
..|+++||+++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+... .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999942 3469999999999999999999999999999999999999999999999999987654 4789
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKE-GNAT----EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~-~~~t----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
||||+|++.||.. |++|||.|+.. ...+ ++++.++++..++.++ ...+..+||||||||+|||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESY-----------ANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHHHHH
Confidence 9999999999975 99999998721 1122 2345566666655443 3344568999999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHHhccC
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETLVHVK 687 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~ 687 (703)
|||+.+|++||||||||+||+.+.+.+.+.|.++.+ +.|+|+|||++..+. .||+|++|++|+|++.|+.+++++.+
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 899999999999875 59999999999999999999998754
Q ss_pred CcHH
Q 005314 688 DGIY 691 (703)
Q Consensus 688 ~g~Y 691 (703)
...|
T Consensus 238 ~~~~ 241 (355)
T 1z47_A 238 GTLF 241 (355)
T ss_dssp SSHH
T ss_pred cchH
Confidence 4444
No 38
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.1e-48 Score=420.57 Aligned_cols=219 Identities=28% Similarity=0.453 Sum_probs=183.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 499999999996 35799999999999999999999999999999999999999999999999999887653 6789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC-CCCHH----HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 538 GLVSQEPVLFND-TVRVNIAYGKEG-NATEA----EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 538 ~~V~Qe~~LF~g-TIreNI~~g~~~-~~t~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
|||+|++.||.. |++|||.|+... ..+.+ ++.++++..++.+ ....+..+||||||||+||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------LLNRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------GTTSCTTTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHH
Confidence 999999999965 999999998321 22333 3455555555433 334456799999999999999
Q ss_pred HhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccCC
Q 005314 612 AMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 612 Allk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~~ 688 (703)
||+.+|++||||||||+||+.+.+.+.+.|.++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|+.+++++.+.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988753 79999999999987 5699999999999999999999987655
Q ss_pred cHHH
Q 005314 689 GIYA 692 (703)
Q Consensus 689 g~Y~ 692 (703)
..|.
T Consensus 235 ~~~~ 238 (372)
T 1v43_A 235 SVFV 238 (372)
T ss_dssp BHHH
T ss_pred cHHH
Confidence 5553
No 39
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=9.6e-49 Score=400.67 Aligned_cols=209 Identities=32% Similarity=0.469 Sum_probs=179.7
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+|+|+ + +|+|+||+|++ +++||+||||||||||+++|+|+++|++|+|.+||+++.+.. .+|++||
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999995 2 59999999999 999999999999999999999999999999999999997643 3578999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCCC-C--CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKEGN-A--TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~~~-~--t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
||+|++.+|.. |++|||.++.... . .++++.++++..+ ++........+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLG-----------IAHLLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTT-----------CTTTTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcC-----------CHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999987 9999999973210 0 1233444444444 333344456789999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
.+|++||||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999988743 89999999999987 55999999999999999999999875
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.4e-48 Score=418.68 Aligned_cols=216 Identities=32% Similarity=0.491 Sum_probs=187.6
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
|+++||+++|+ +. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+... .|++||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 34 9999999999999999999999999999999999999999999999999987654 478999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 539 LVSQEPVLFND-TVRVNIAYGKE--GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 539 ~V~Qe~~LF~g-TIreNI~~g~~--~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
||+|++.||.. |++|||.|+.. ....++++.++++..++.++. ..+..+||||||||+||||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999998721 011225677777777664443 33456899999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHhccCCcHH
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLVHVKDGIY 691 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y 691 (703)
+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||++..+ ..||+|++|++|+|++.|+.+++.+++...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 9999999999999999999999999988743 89999999999976 5699999999999999999999987644444
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.9e-49 Score=421.74 Aligned_cols=221 Identities=28% Similarity=0.404 Sum_probs=188.3
Q ss_pred cEEEEEEEEEcCCCCCcc--cccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC---HHH
Q 005314 458 DIEFQHITFKYPARPDVQ--IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ---LKW 532 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~--vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~---~~~ 532 (703)
.|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 4899999999963 46 999999999999999999999999999999999999999999999999987621 234
Q ss_pred HhcceEEEccCCCCCcc-cHHHHHhcCCCC-CCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 533 LRQQMGLVSQEPVLFND-TVRVNIAYGKEG-NATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 533 lR~~i~~V~Qe~~LF~g-TIreNI~~g~~~-~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
.|++||||+|++.||.. |++|||.|+... ..+. +++.++++..++.++. .....+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~~~~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-----------NHFPRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHH
Confidence 57899999999999976 999999998321 1232 3456666666554433 33446899999999
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhHH
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~eL 683 (703)
+||||||+.+|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+.+++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988743 899999999999875 5999999999999999999999
Q ss_pred hccCCcHHH
Q 005314 684 VHVKDGIYA 692 (703)
Q Consensus 684 l~~~~g~Y~ 692 (703)
++++...|.
T Consensus 229 ~~~p~~~~~ 237 (353)
T 1oxx_K 229 YDNPVSIQV 237 (353)
T ss_dssp HHSCSSHHH
T ss_pred HhCcccHHH
Confidence 876444443
No 42
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.8e-48 Score=400.95 Aligned_cols=218 Identities=22% Similarity=0.331 Sum_probs=182.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC--CCCCCCeEEECCeeCCCCCHHHH-h
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF--YDPDTGHITLDGVEIQKLQLKWL-R 534 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~--y~p~~G~I~idG~di~~~~~~~l-R 534 (703)
.|+++||+|+|+ +.++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|+++..++...+ |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999996 35799999999999999999999999999999999999 68999999999999998887665 4
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCC--------CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCC-C-CCChhH
Q 005314 535 QQMGLVSQEPVLFND-TVRVNIAYGK--------EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERG-I-QLSGGQ 603 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~g-TIreNI~~g~--------~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G-~-~LSGGQ 603 (703)
+.|+||+|+|.+|.+ |++||+.++. .+..+.++..+ .+.+.++.+ |+++.+.++. . +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999999876 9999997641 11123322211 123334443 5554444443 3 599999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCEEEEecCh
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD--ADLIAVVKNGVIAEKGKH 680 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~--aD~I~vl~~G~Ive~Gth 680 (703)
|||++|||||+.+|+|||||||||+||+.+.+.+.+.|.++. +++|+|+|||++..+.. ||+|++|++|+|++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999998875 47999999999999875 899999999999999999
Q ss_pred hHHhc
Q 005314 681 ETLVH 685 (703)
Q Consensus 681 ~eLl~ 685 (703)
+++..
T Consensus 250 ~~~~~ 254 (267)
T 2zu0_C 250 TLVKQ 254 (267)
T ss_dssp THHHH
T ss_pred HHHhh
Confidence 98753
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.3e-47 Score=395.35 Aligned_cols=215 Identities=26% Similarity=0.367 Sum_probs=172.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC--CCCCCCeEEECCeeCCCCCHHHH-h
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF--YDPDTGHITLDGVEIQKLQLKWL-R 534 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~--y~p~~G~I~idG~di~~~~~~~l-R 534 (703)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|+++.+.+.... |
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999963 5799999999999999999999999999999999999 89999999999999998887665 5
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCC---C-CCCHHHHHHHHHHhcHHHHHHHhhccccchhc-CCCCC-CChhHHHHH
Q 005314 535 QQMGLVSQEPVLFND-TVRVNIAYGKE---G-NATEAEVLAAAELANAHQFISSLKQGYDTIVG-ERGIQ-LSGGQKQRV 607 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~g-TIreNI~~g~~---~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG-e~G~~-LSGGQkQRi 607 (703)
+.++||+|+|.+|.+ |++||+.++.. . ....++..+. +.+.++.+ |+++... ....+ ||||||||+
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTK-----VKKALELL--DWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHHH--TCCGGGGGSBTTCC----HHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHH-----HHHHHHHc--CCChhHhcCCcccCCCHHHHHHH
Confidence 569999999999986 99999987521 0 1121111111 12223322 3432222 23345 999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCEEEEecChhH
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD--ADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~--aD~I~vl~~G~Ive~Gth~e 682 (703)
+|||||+++|+|||||||||+||+++.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999875 47999999999999876 59999999999999999873
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.2e-48 Score=419.02 Aligned_cols=219 Identities=26% Similarity=0.453 Sum_probs=186.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC------CCHH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK------LQLK 531 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~------~~~~ 531 (703)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ +..
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 389999999996 3579999999999999999999999999999999999999999999999999876 443
Q ss_pred HHhcceEEEccCCCCCc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHH
Q 005314 532 WLRQQMGLVSQEPVLFN-DTVRVNIAYGKE-GNATE----AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQ 605 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~LF~-gTIreNI~~g~~-~~~t~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQ 605 (703)
.+++||||+|++.||. .|++|||.|+.. ...+. +++.++++..++.+ ....+..+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~~~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-----------LLNRKPRELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-----------GTTCCGGGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCCcccCCHHHHH
Confidence 3688999999999996 599999999721 11222 23455555554433 334455789999999
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCEEEEecChhH
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTIR-DADLIAVVKNGVIAEKGKHET 682 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~-~aD~I~vl~~G~Ive~Gth~e 682 (703)
|+||||||+.+|++||||||||+||+.+...+.+.|.++.+ +.|+|+|||++..+. .||+|++|++|+|++.|+.++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988753 899999999999874 699999999999999999999
Q ss_pred HhccCCcHHH
Q 005314 683 LVHVKDGIYA 692 (703)
Q Consensus 683 Ll~~~~g~Y~ 692 (703)
+++++...|.
T Consensus 227 l~~~p~~~~~ 236 (372)
T 1g29_1 227 VYDKPANTFV 236 (372)
T ss_dssp HHHSCSBHHH
T ss_pred HHhCcccHHH
Confidence 9876555553
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.1e-47 Score=394.29 Aligned_cols=208 Identities=19% Similarity=0.283 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCC-CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 459 IEFQHITFKYPAR-PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~-~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
|+++||+|+|++. ...++|+|+||+|+ |+++||+||||||||||+++|+|++ |++|+|.++|+++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01579999999999 9999999999999999999999999 9999999999998765 33 7899
Q ss_pred E-EEccCCCCCcccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChhHHHHHHHHHHhc
Q 005314 538 G-LVSQEPVLFNDTVRVNIAYGKE-GNATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 538 ~-~V~Qe~~LF~gTIreNI~~g~~-~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQkQRiaIARAll 614 (703)
+ ||+|++.+ +.|++|||.++.. .+..++++.++++.. |++ .....+..+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKAL-----------KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHT-----------TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHc-----------CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 9999999998621 123455566655554 444 5566778899999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcC-EEEEEeCCEEEEecChhHHhc
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTI-RDAD-LIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti-~~aD-~I~vl~~G~Ive~Gth~eLl~ 685 (703)
.+|++||||||||+||+++.+.+.+.|.++.+ |+|+|||++..+ +.|| +|++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999988754 999999999987 4699 999999999999999999975
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.9e-47 Score=390.64 Aligned_cols=209 Identities=26% Similarity=0.372 Sum_probs=177.0
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.|+++||+|+|+. +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999962 24799999999999999999999999999999999999999999998 46789
Q ss_pred EEEccCCCCC-cccHHHHHhcCCCC--C----CC---HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH
Q 005314 538 GLVSQEPVLF-NDTVRVNIAYGKEG--N----AT---EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV 607 (703)
Q Consensus 538 ~~V~Qe~~LF-~gTIreNI~~g~~~--~----~t---~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi 607 (703)
+||||++.+| ..|++|||.++... . .. ++++.++++..++. ........+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-----------HLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-----------GGTTSBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-----------HHhcCChhhCCHHHHHHH
Confidence 9999999987 67999999997311 0 11 23455555555543 334456679999999999
Q ss_pred HHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHHh
Q 005314 608 AIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV--GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 608 aIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eLl 684 (703)
+|||||+.+|+|||||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+++.+ +.||+|++|++|+ ++.|++++++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999988753 79999999999998 5699999999999 9999999987
Q ss_pred ccCCcHHHHHH
Q 005314 685 HVKDGIYASLV 695 (703)
Q Consensus 685 ~~~~g~Y~~l~ 695 (703)
+. ..+.+.+
T Consensus 217 ~~--~~~~~~~ 225 (253)
T 2nq2_C 217 TS--ENLTALF 225 (253)
T ss_dssp CH--HHHHHHH
T ss_pred Cc--HHHHHHh
Confidence 53 2344444
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-46 Score=375.16 Aligned_cols=198 Identities=18% Similarity=0.329 Sum_probs=167.8
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
..|+++||+|+|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+|++
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK 79 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence 3699999999996 3 6999999999999999999999999999999999999999999999999986 36889
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCC--C-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 537 MGLVSQEPVLFND-TVRVNIAYGKE--G-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 537 i~~V~Qe~~LF~g-TIreNI~~g~~--~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
|+||+|+|.+|.+ |++|||.++.. . ...++++.++++.. |++.. ..+..+||||||||++||||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHH
Confidence 9999999999987 99999988621 1 12245555555444 45555 67788999999999999999
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCEEE
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVVKNGVIA 675 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl~~G~Iv 675 (703)
|+++|++||||||||+||+.+.+.+.+.|.++. +++|+|+|||++..+..++..+++.+|+|-
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 999999999999999999999999999998865 478999999999998774444446667764
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.9e-44 Score=379.20 Aligned_cols=239 Identities=18% Similarity=0.263 Sum_probs=199.3
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccccCCCCcEEEEEEEEEc
Q 005314 389 EAGKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIENVKGDIEFQHITFKY 468 (703)
Q Consensus 389 ~~g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~~I~~~~vsF~Y 468 (703)
..+..+.+.+.+++.+... ..++.++..++..+.++..+..|+.++++.+++..... . ......+.|+++||+|+|
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y 111 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELIT 111 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHH
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEc
Confidence 3345566777777666555 57899999999999999999999999998765432111 1 111223469999999999
Q ss_pred CCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCc
Q 005314 469 PARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN 548 (703)
Q Consensus 469 ~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~ 548 (703)
+ .++|+++||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|++++|.
T Consensus 112 ~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~ 166 (305)
T 2v9p_A 112 F----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWL 166 (305)
T ss_dssp H----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGG
T ss_pred C----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccc
Confidence 6 46999999999999999999999999999999999999 8998 467899999999
Q ss_pred ccHHH-HHhcCCCCCCCHHHHHHHHHHhcHHHHHHH-hhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccC
Q 005314 549 DTVRV-NIAYGKEGNATEAEVLAAAELANAHQFISS-LKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEAT 626 (703)
Q Consensus 549 gTIre-NI~~g~~~~~t~~ei~~A~~~a~l~~~I~~-Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaT 626 (703)
+|++| ||.|+ + ++++ +++++|+. ||+|+| |.+|||||||| |||++++|+||| |
T Consensus 167 ~ti~~~ni~~~-~-~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----T 221 (305)
T 2v9p_A 167 ASLADTRAALV-D-DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----T 221 (305)
T ss_dssp GGGTTCSCEEE-E-EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----E
T ss_pred ccHHHHhhccC-c-cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----E
Confidence 99998 99998 3 4553 46788888 999998 78999999999 999999999999 9
Q ss_pred cCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhccCCcHHHHHHHhhh
Q 005314 627 SALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHVKDGIYASLVALQT 699 (703)
Q Consensus 627 SaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~~g~Y~~l~~~q~ 699 (703)
|+||+++++.|+. +|||+++++.||+| +|++|+|++.|+|++| ++.|+++|..+.
T Consensus 222 s~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 222 SNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp ESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTT
T ss_pred CCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHcc
Confidence 9999999998862 39999999999999 9999999999999999 478999987653
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.8e-37 Score=351.30 Aligned_cols=200 Identities=22% Similarity=0.287 Sum_probs=167.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+ +.+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5899999999952 3699999999999999999999999999999999999999999986 2479
Q ss_pred EEEccCCCC-CcccHHHHHhcC-CCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 538 GLVSQEPVL-FNDTVRVNIAYG-KEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 538 ~~V~Qe~~L-F~gTIreNI~~g-~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
|||||++.+ ++.|++||+.+. .......+.+.++++.. |++........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----------GIIDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 678999998764 11001122333333333 34333445567899999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeC--CEEEEecChhHHhc
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKN--GVIAEKGKHETLVH 685 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~--G~Ive~Gth~eLl~ 685 (703)
+|+||||||||++||..+...+.+.|+++. .++|+|+|||++..+. .||+|++|++ |+++..|+.++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 4899999999999986 4999999996 88888999988875
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.7e-36 Score=343.62 Aligned_cols=200 Identities=23% Similarity=0.278 Sum_probs=166.0
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.++++|++++|.+ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.++| +.+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 5889999999963 468888999999999999999999999999999999999999999876 368
Q ss_pred EEEccCCCC-CcccHHHHHhcCCCCC--CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 538 GLVSQEPVL-FNDTVRVNIAYGKEGN--ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 538 ~~V~Qe~~L-F~gTIreNI~~g~~~~--~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
+|++|++.. |..|++||+.+..... ...+.+.++++..++ .........+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL-----------HRLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG-----------GGCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC-----------HHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999864 6789999998752211 122334555554444 33344556789999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeC--CEEEEecChhHHh
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKN--GVIAEKGKHETLV 684 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~--G~Ive~Gth~eLl 684 (703)
++|+||||||||++||+.+...|.+.|.++. .++|+|+|||++..+.. ||+|+||++ |++...|+..++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999998874 48899999999999865 999999986 5666667665543
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-36 Score=345.35 Aligned_cols=200 Identities=23% Similarity=0.297 Sum_probs=166.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
.++++|+++.|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 4899999999952 3699999999999999999999999999999999999999999986 2479
Q ss_pred EEEccCCCC-CcccHHHHHhcC-CCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 538 GLVSQEPVL-FNDTVRVNIAYG-KEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 538 ~~V~Qe~~L-F~gTIreNI~~g-~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
|||||++.+ ++.|+.||+... .......+.+.+++ ..+ |+.........+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL---------KPL--GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT---------TTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH---------HHc--CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 678999998653 11001122233333 222 44444455667899999999999999999
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeC--CEEEEecChhHHhc
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVKN--GVIAEKGKHETLVH 685 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~~--G~Ive~Gth~eLl~ 685 (703)
+|++|||||||++||..+...|.+.|.++. .++|+|+|||++..+. .||+|++|++ |+++..|+.++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999874 3899999999999986 5999999996 78889999888775
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.5e-36 Score=356.47 Aligned_cols=206 Identities=24% Similarity=0.380 Sum_probs=155.8
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcce
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQM 537 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i 537 (703)
-|+++||+|+|+++ +.++|+|+||+|++|+++||+||||||||||+++|.|++.|++|+|.++|. ..|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 49999999999753 357999999999999999999999999999999999999999999999872 157
Q ss_pred EEEccCCCC-----CcccHHHHHhc-------------------------------------------------------
Q 005314 538 GLVSQEPVL-----FNDTVRVNIAY------------------------------------------------------- 557 (703)
Q Consensus 538 ~~V~Qe~~L-----F~gTIreNI~~------------------------------------------------------- 557 (703)
+||+|++.. ++.|+++||.+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 888887531 23455555532
Q ss_pred -----------CCC--CCCC--------HHHHH-------------HHHH--------HhcHHHHHHHhhccccchh--c
Q 005314 558 -----------GKE--GNAT--------EAEVL-------------AAAE--------LANAHQFISSLKQGYDTIV--G 593 (703)
Q Consensus 558 -----------g~~--~~~t--------~~ei~-------------~A~~--------~a~l~~~I~~Lp~G~dT~v--G 593 (703)
+.. ...+ .+++. +++. ...+.+.+..+ |++... .
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 200 0000 00000 0000 01133344444 554432 3
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCC
Q 005314 594 ERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR-DADLIAVVKNG 672 (703)
Q Consensus 594 e~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~-~aD~I~vl~~G 672 (703)
....+||||||||++|||||+.+|+||||||||++||+++...+.+.|.+. ++|+|+|||++..+. .||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 456789999999999999999999999999999999999999999999775 679999999999985 59999999999
Q ss_pred EEEEecC
Q 005314 673 VIAEKGK 679 (703)
Q Consensus 673 ~Ive~Gt 679 (703)
+|++.|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9998775
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.1e-35 Score=345.42 Aligned_cols=201 Identities=27% Similarity=0.407 Sum_probs=150.5
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHc---------------------CCCCCCCCeEEECCeeCCCCCHHH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ---------------------RFYDPDTGHITLDGVEIQKLQLKW 532 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~---------------------g~y~p~~G~I~idG~di~~~~~~~ 532 (703)
.++|+|+||+|++||++||+||||||||||+++|+ +-+.+..|.|.++|.++.......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 46899999999999999999999999999998753 122344578999998886543211
Q ss_pred Hh-----------------------------------------cceEEEccCCCCC------------------------
Q 005314 533 LR-----------------------------------------QQMGLVSQEPVLF------------------------ 547 (703)
Q Consensus 533 lR-----------------------------------------~~i~~V~Qe~~LF------------------------ 547 (703)
.+ +..|++.|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 11 1123444433322
Q ss_pred ---------cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChhHHHHHHHHHHhccCC
Q 005314 548 ---------NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGGQKQRVAIARAMVKAP 617 (703)
Q Consensus 548 ---------~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQkQRiaIARAllk~p 617 (703)
..|++||+.+. ......++..++ +..+ |+. ...+....+||||||||++|||||+.+|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFF-ASIPKIKRKLET---------LYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHT-TTCHHHHHHHHH---------HHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred cCCCHHHHhhCCHHHHHHHH-HHhhhHHHHHHH---------HHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 35889999887 221111222222 3333 332 2346677899999999999999999886
Q ss_pred ---CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------eCCEEEEecChhHHhcc
Q 005314 618 ---KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVV------KNGVIAEKGKHETLVHV 686 (703)
Q Consensus 618 ---~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl------~~G~Ive~Gth~eLl~~ 686 (703)
+|||||||||+||+.+.+.|.+.|.++. +|+|+|+|||+++.++.||+|++| ++|+|++.|+++|+.+.
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 5999999999999999999999998875 489999999999999999999999 89999999999999875
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.7e-34 Score=337.00 Aligned_cols=197 Identities=22% Similarity=0.293 Sum_probs=164.3
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
..|...|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 46888899999963 479999999999999999999999999999999995 665 5654421 124
Q ss_pred eEEEccCC-CC-CcccHHHHHhcCCCCCCCHHHHHHHHHHhcH-HHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 537 MGLVSQEP-VL-FNDTVRVNIAYGKEGNATEAEVLAAAELANA-HQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 537 i~~V~Qe~-~L-F~gTIreNI~~g~~~~~t~~ei~~A~~~a~l-~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
++|++|++ .+ ...|++||+.+. .... ++++.++++..++ .++.. ..-.+||||||||++|||||
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~-~~~~-~~~v~~~L~~lgL~~~~~~-----------~~~~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFES-GVGT-KEAIKDKLIEFGFTDEMIA-----------MPISALSGGWKMKLALARAV 563 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTT-CSSC-HHHHHHHHHHTTCCHHHHH-----------SBGGGCCHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHh-hcCH-HHHHHHHHHHcCCChhhhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 79999986 44 456999999862 2122 6778888887776 33332 23357999999999999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCEEE-EecChhHHhc
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGVIA-EKGKHETLVH 685 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~Iv-e~Gth~eLl~ 685 (703)
+.+|+||||||||++||+.+.+.+.+.|.+ .++|+|+|||++..+.. ||+|++|++|+++ ..|+++++++
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999988 68999999999999865 9999999999997 5899999875
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.7e-35 Score=341.70 Aligned_cols=213 Identities=24% Similarity=0.391 Sum_probs=142.8
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHH---------------------HhHcCCCCCC-------CCeEEECCee
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVI---------------------SLLQRFYDPD-------TGHITLDGVE 524 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~---------------------~lL~g~y~p~-------~G~I~idG~d 524 (703)
...+|+|+||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 8999999998 5566677765
Q ss_pred CCCCCHHHHhcceEEEccCCCCC--------------------cccHHHHHhcCCCCCCCH--HH-----HHHHHHHhcH
Q 005314 525 IQKLQLKWLRQQMGLVSQEPVLF--------------------NDTVRVNIAYGKEGNATE--AE-----VLAAAELANA 577 (703)
Q Consensus 525 i~~~~~~~lR~~i~~V~Qe~~LF--------------------~gTIreNI~~g~~~~~t~--~e-----i~~A~~~a~l 577 (703)
+.. ..|+.+++|+|.+.++ ..|++||+.+.......+ .+ +.++.+..
T Consensus 110 ~~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 183 (670)
T 3ux8_A 110 TSR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-- 183 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHH--
T ss_pred hhc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH--
Confidence 532 3356677777765543 459999998852111111 11 11111111
Q ss_pred HHHHHHhhccccch-hcCCCCCCChhHHHHHHHHHHhccCCC--EEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEE
Q 005314 578 HQFISSLKQGYDTI-VGERGIQLSGGQKQRVAIARAMVKAPK--ILLLDEATSALDAESERVIQDALERVM-VGRTTVVI 653 (703)
Q Consensus 578 ~~~I~~Lp~G~dT~-vGe~G~~LSGGQkQRiaIARAllk~p~--ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvI 653 (703)
+.+..+ |++.. ......+||||||||++|||||+.+|+ |||||||||+||+.+...+.+.|.++. +|+|+|+|
T Consensus 184 -~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 184 -GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVV 260 (670)
T ss_dssp -HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred -HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 123333 33322 234566899999999999999999998 999999999999999999999998864 58999999
Q ss_pred ccCchHHhhcCEEEEE------eCCEEEEecChhHHhccCCcHHHHH
Q 005314 654 AHRLSTIRDADLIAVV------KNGVIAEKGKHETLVHVKDGIYASL 694 (703)
Q Consensus 654 aHrlsti~~aD~I~vl------~~G~Ive~Gth~eLl~~~~g~Y~~l 694 (703)
||++..+..||+|++| ++|+|++.|+.+++.+.+...+...
T Consensus 261 tHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 307 (670)
T 3ux8_A 261 EHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQY 307 (670)
T ss_dssp CCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHH
T ss_pred eCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHH
Confidence 9999999999999999 8999999999999987533344433
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.5e-35 Score=334.90 Aligned_cols=197 Identities=23% Similarity=0.325 Sum_probs=158.7
Q ss_pred cEEE--------EEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE---------EE
Q 005314 458 DIEF--------QHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI---------TL 520 (703)
Q Consensus 458 ~I~~--------~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I---------~i 520 (703)
.|++ +||+++|+++ ..+|+|+| +|++||++||+||||||||||+++|.|++.|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3788 8999999642 25899999 999999999999999999999999999999999996 46
Q ss_pred CCeeCCCCCHHH--HhcceEEEccCC----CCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcC
Q 005314 521 DGVEIQKLQLKW--LRQQMGLVSQEP----VLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGE 594 (703)
Q Consensus 521 dG~di~~~~~~~--lR~~i~~V~Qe~----~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe 594 (703)
+|.++..+.... .+..+++++|.. .++.+|++||+... .. .+++.++++..++. .....
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-~~---~~~~~~~L~~lgL~-----------~~~~~ 224 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-DE---VGKFEEVVKELELE-----------NVLDR 224 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-CC---SSCHHHHHHHTTCT-----------TGGGS
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-HH---HHHHHHHHHHcCCC-----------chhCC
Confidence 776654332111 235688999874 34557999999754 21 23455666555542 22333
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCC
Q 005314 595 RGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNG 672 (703)
Q Consensus 595 ~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G 672 (703)
.-.+||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++. +|+|+|+|||++..+.. ||+|++|+++
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 456799999999999999999999999999999999999999999998864 48999999999998865 9999999864
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-35 Score=333.99 Aligned_cols=199 Identities=27% Similarity=0.382 Sum_probs=165.1
Q ss_pred EEEEEEcCCCCCcccccceeEEeeCC-----CEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 462 QHITFKYPARPDVQIFRDLCLAIPSG-----KMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 462 ~~vsF~Y~~~~~~~vL~~isl~I~~G-----~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
++++|+|+.. ..+++++||++++| |++||+||||||||||+++|.|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 6788999843 45899999999999 7899999999999999999999999999973 21 347
Q ss_pred eEEEccCCC-CCcccHHHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 537 MGLVSQEPV-LFNDTVRVNIAYGKEG-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 537 i~~V~Qe~~-LF~gTIreNI~~g~~~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
++|++|++. .|..|+++|+...... ....+...++++..++ .........+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI-----------DDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS-----------TTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 5788999998653211 1234444455544443 33344556789999999999999999
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeC--CEEEEecChhHHhcc
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKN--GVIAEKGKHETLVHV 686 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~--G~Ive~Gth~eLl~~ 686 (703)
.+|+||||||||++||+.+...+.+.|.++. .|+|+|+|||++..+.. ||||+||++ |+++..|+.++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999999865 999999997 999999999999864
No 58
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-34 Score=340.99 Aligned_cols=219 Identities=28% Similarity=0.460 Sum_probs=163.6
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHH---------HhHcCC------CCCCCCe----
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVI---------SLLQRF------YDPDTGH---- 517 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~---------~lL~g~------y~p~~G~---- 517 (703)
..+++++++ ...|+|+||+|++|++++|+|+||||||||+ +++.+. +++.+|.
T Consensus 588 ~~l~v~~~~--------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~ 659 (916)
T 3pih_A 588 ASLKIKGVR--------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENID 659 (916)
T ss_dssp SEEEEEEEC--------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCC
T ss_pred ceEEEeeec--------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhcccccccccccccccccccc
Confidence 346666543 2469999999999999999999999999997 344443 3343443
Q ss_pred --EEECCeeCCCCC---H-------HHHh-------------------------------cceEEEccCCCCCc------
Q 005314 518 --ITLDGVEIQKLQ---L-------KWLR-------------------------------QQMGLVSQEPVLFN------ 548 (703)
Q Consensus 518 --I~idG~di~~~~---~-------~~lR-------------------------------~~i~~V~Qe~~LF~------ 548 (703)
|.+|..++.... + ..+| +..|++.|+..++.
T Consensus 660 ~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c 739 (916)
T 3pih_A 660 KMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVEC 739 (916)
T ss_dssp EEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEEC
T ss_pred ceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeec
Confidence 555555543221 0 1111 34578888876653
Q ss_pred ---------------------------ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCCh
Q 005314 549 ---------------------------DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSG 601 (703)
Q Consensus 549 ---------------------------gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 601 (703)
.|++||+.+. ......++..++++..++ || ..+|..+.+|||
T Consensus 740 ~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~-~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSG 808 (916)
T 3pih_A 740 DVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFF-KNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSG 808 (916)
T ss_dssp TTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHT-TTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCH
T ss_pred ccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHH-hcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCH
Confidence 4677777665 221122333344444333 43 357899999999
Q ss_pred hHHHHHHHHHHhccCC---CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------eC
Q 005314 602 GQKQRVAIARAMVKAP---KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVV------KN 671 (703)
Q Consensus 602 GQkQRiaIARAllk~p---~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl------~~ 671 (703)
||||||+|||||+++| +||||||||++||+++++.+++.|+++. +|+|+|+|+|+++.++.||+|++| ++
T Consensus 809 GErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~ 888 (916)
T 3pih_A 809 GEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEG 888 (916)
T ss_dssp HHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGC
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCC
Confidence 9999999999999876 7999999999999999999999998874 589999999999999999999999 89
Q ss_pred CEEEEecChhHHhccCCcHHHHHH
Q 005314 672 GVIAEKGKHETLVHVKDGIYASLV 695 (703)
Q Consensus 672 G~Ive~Gth~eLl~~~~g~Y~~l~ 695 (703)
|+|+++|+|+|+++. .+.|..-+
T Consensus 889 G~Iv~~Gtpeel~~~-~~syt~~~ 911 (916)
T 3pih_A 889 GYIVATGTPEEIAKN-PHSYTGRF 911 (916)
T ss_dssp CEEEEEESHHHHHSC-TTCHHHHH
T ss_pred CEEEEEcCHHHHHhC-CchHHHHH
Confidence 999999999999986 56666544
No 59
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9.5e-35 Score=330.14 Aligned_cols=196 Identities=23% Similarity=0.328 Sum_probs=154.6
Q ss_pred EEE-EEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE---------EECCeeCCCC
Q 005314 459 IEF-QHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI---------TLDGVEIQKL 528 (703)
Q Consensus 459 I~~-~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I---------~idG~di~~~ 528 (703)
.++ +||+|+|++. ..+|+|+| +|++||++|||||||||||||+++|+|++.|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 5899999742 25899999 999999999999999999999999999999999996 4677665432
Q ss_pred CHHH--HhcceEEEccCCCC----CcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 529 QLKW--LRQQMGLVSQEPVL----FNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 529 ~~~~--lR~~i~~V~Qe~~L----F~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
.... .+..+++++|+..+ +.+|++||+... .. .+++.++++..++ +......-.+||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~-~~---~~~~~~~l~~lgl-----------~~~~~~~~~~LSgG 162 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA-DE---TGKLEEVVKALEL-----------ENVLEREIQHLSGG 162 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH-CS---SSCHHHHHHHTTC-----------TTTTTSBGGGCCHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh-hH---HHHHHHHHHHcCC-----------ChhhhCChhhCCHH
Confidence 1111 23468999997544 346999998653 21 2345566655554 22233345689999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCC
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD-ADLIAVVKNG 672 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~-aD~I~vl~~G 672 (703)
||||++|||||+.+|+|||||||||+||+++...+.+.|+++. .++|+|+|||++..+.. ||+|++|++|
T Consensus 163 ekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 163 ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999999998764 48999999999999865 9999999864
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.8e-32 Score=314.05 Aligned_cols=196 Identities=22% Similarity=0.335 Sum_probs=151.9
Q ss_pred EEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE-----------EECCeeCCCCCHH
Q 005314 463 HITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI-----------TLDGVEIQKLQLK 531 (703)
Q Consensus 463 ~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I-----------~idG~di~~~~~~ 531 (703)
|++++|... ...|++++ ++++||++||+||||||||||+++|.|++.|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 568999743 35678877 699999999999999999999999999999999998 4555555444444
Q ss_pred HHhcceEE--EccCCCC----Cc---ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 532 WLRQQMGL--VSQEPVL----FN---DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 532 ~lR~~i~~--V~Qe~~L----F~---gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
.+++.+.. .+|.... +. .++.+++... . +..++++.++++..++. ......-.+||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~-~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG 225 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-M-EKSPEDVKRYIKILQLE-----------NVLKRDIEKLSGG 225 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-C-CSCHHHHHHHHHHHTCT-----------GGGGSCTTTCCHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-h-hhHHHHHHHHHHHcCCc-----------chhCCChHHCCHH
Confidence 45555543 3333221 11 2677777654 2 23456677776666543 3334556789999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCEE
Q 005314 603 QKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRD-ADLIAVVKNGVI 674 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~-aD~I~vl~~G~I 674 (703)
||||++|||||+.+|+|||||||||+||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|..
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999999998754 7999999999999865 999999998653
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.4e-32 Score=311.57 Aligned_cols=192 Identities=21% Similarity=0.356 Sum_probs=151.8
Q ss_pred EEEEEcCCCCCcccccceeEEee-CCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE-----------EECCeeCCCCCH
Q 005314 463 HITFKYPARPDVQIFRDLCLAIP-SGKMVALVGESGSGKSTVISLLQRFYDPDTGHI-----------TLDGVEIQKLQL 530 (703)
Q Consensus 463 ~vsF~Y~~~~~~~vL~~isl~I~-~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I-----------~idG~di~~~~~ 530 (703)
+++.+|..+ -|+-..|.++ +||++|||||||||||||+++|+|++.|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 567789632 3666667665 999999999999999999999999999999999 678877754322
Q ss_pred HHH------hcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 531 KWL------RQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 531 ~~l------R~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
... +..+.+++|.+.++.+|+++++... .. .+++.++++..++.+ .....-.+||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~---~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~ 144 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI-DE---RGKKDEVKELLNMTN-----------LWNKDANILSGGGL 144 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH-CC---SSCHHHHHHHTTCGG-----------GTTSBGGGCCHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcc-hh---HHHHHHHHHHcCCch-----------hhcCChhhCCHHHH
Confidence 222 2234556666778889999988654 21 224555565555422 22334467999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCE
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRD-ADLIAVVKNGV 673 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~-aD~I~vl~~G~ 673 (703)
||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+++|+|+|+|++..+.. ||+|++|++|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999998889999999999998865 99999998754
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=1.4e-31 Score=314.68 Aligned_cols=211 Identities=22% Similarity=0.376 Sum_probs=158.9
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHh-HcCCC-------CC---------------
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISL-LQRFY-------DP--------------- 513 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~l-L~g~y-------~p--------------- 513 (703)
..|+++|+++. +|+|+||+|++|+++||+|+||||||||++. |.|+. .|
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 45999999861 5999999999999999999999999999996 65442 22
Q ss_pred ---CCC-------eEEECCeeCCCCCH----------HHHhcceEEEc---------c----------------------
Q 005314 514 ---DTG-------HITLDGVEIQKLQL----------KWLRQQMGLVS---------Q---------------------- 542 (703)
Q Consensus 514 ---~~G-------~I~idG~di~~~~~----------~~lR~~i~~V~---------Q---------------------- 542 (703)
..| .|.+||.++..-.. +.+|+.++.++ +
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 466 68999988864322 33444333322 1
Q ss_pred CCCCC-------------------------cccHHHHHhcCC-------CCCCCHHHHHHHHHHhcHHHHHHHhhccccc
Q 005314 543 EPVLF-------------------------NDTVRVNIAYGK-------EGNATEAEVLAAAELANAHQFISSLKQGYDT 590 (703)
Q Consensus 543 e~~LF-------------------------~gTIreNI~~g~-------~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT 590 (703)
|-.++ .-||.||+.+.. .. . .++ ....+.+..+ |+..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~--~~~------~~~~~~L~~~--gL~~ 721 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-E--SAI------FRALDTLREV--GLGY 721 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-S--HHH------HHHHHHHHHT--TCTT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-c--hHH------HHHHHHHHHc--CCCc
Confidence 11111 125556554320 10 0 111 1233445555 4444
Q ss_pred -hhcCCCCCCChhHHHHHHHHHHhccC---CCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCE
Q 005314 591 -IVGERGIQLSGGQKQRVAIARAMVKA---PKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADL 665 (703)
Q Consensus 591 -~vGe~G~~LSGGQkQRiaIARAllk~---p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~ 665 (703)
.++....+|||||||||+|||||+++ |+||||||||++||..+.+.+.+.|.++. +|+|+|+|+|++..++.||+
T Consensus 722 ~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDr 801 (842)
T 2vf7_A 722 LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDW 801 (842)
T ss_dssp SBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 46788889999999999999999996 69999999999999999999999998864 58999999999999999999
Q ss_pred EEEE------eCCEEEEecChhHHhcc
Q 005314 666 IAVV------KNGVIAEKGKHETLVHV 686 (703)
Q Consensus 666 I~vl------~~G~Ive~Gth~eLl~~ 686 (703)
|++| ++|+|++.|+++++++.
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 9999 69999999999999875
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-35 Score=327.57 Aligned_cols=192 Identities=11% Similarity=0.064 Sum_probs=155.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC-e-EEECCeeCCCCCHHHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG-H-ITLDGVEIQKLQLKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G-~-I~idG~di~~~~~~~lR~ 535 (703)
.|+++||+|+|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |.+|| +.|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccC
Confidence 466666666662 79999999999999999999999999999999999999 9 99998 1478
Q ss_pred ceEEEccCCCCCc----ccHHHHHhcCCCC--C-CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHH
Q 005314 536 QMGLVSQEPVLFN----DTVRVNIAYGKEG--N-ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVA 608 (703)
Q Consensus 536 ~i~~V~Qe~~LF~----gTIreNI~~g~~~--~-~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRia 608 (703)
.+++|||++.+|. .|++||+ |+... . ..++++.++++.. |++.... ..+||||||||+|
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrla 245 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLG 245 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHH
Confidence 9999999996554 4899999 76321 0 1112233333333 3444332 6799999999999
Q ss_pred HHHH--hccCCCE----EEeec-cCcCCCHHHHHHHHHHHHHHcCCceEEEEccCch------HH-hhcCE-----EEEE
Q 005314 609 IARA--MVKAPKI----LLLDE-ATSALDAESERVIQDALERVMVGRTTVVIAHRLS------TI-RDADL-----IAVV 669 (703)
Q Consensus 609 IARA--llk~p~I----LlLDE-aTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrls------ti-~~aD~-----I~vl 669 (703)
|||| |+.+|++ ||||| ||++||+. .+.+.+.+++. ++|+|+|+|+.. .+ +.||+ |++|
T Consensus 246 lAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l 322 (460)
T 2npi_A 246 QVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI 322 (460)
T ss_dssp HHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEE
Confidence 9999 9999999 99999 99999999 66777777664 789999999988 44 56999 9999
Q ss_pred e-CCEEEEecChhHHhc
Q 005314 670 K-NGVIAEKGKHETLVH 685 (703)
Q Consensus 670 ~-~G~Ive~Gth~eLl~ 685 (703)
+ +|+|+ .|+++++.+
T Consensus 323 ~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 323 PKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCCTTCC-CCCHHHHHH
T ss_pred eCCCcEE-ECCHHHHhh
Confidence 9 99999 999998854
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=1.4e-31 Score=295.76 Aligned_cols=201 Identities=20% Similarity=0.259 Sum_probs=155.2
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC--------------------------------------CCCC
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD--------------------------------------PDTG 516 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~--------------------------------------p~~G 516 (703)
..|++++|++++| +++|||+||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3689999999999 999999999999999998855442 5588
Q ss_pred eEEECCeeCCCCCHHHHhcc-eEEEccCCCCCcccHHHHHhcCCCCCCCH------------------------------
Q 005314 517 HITLDGVEIQKLQLKWLRQQ-MGLVSQEPVLFNDTVRVNIAYGKEGNATE------------------------------ 565 (703)
Q Consensus 517 ~I~idG~di~~~~~~~lR~~-i~~V~Qe~~LF~gTIreNI~~g~~~~~t~------------------------------ 565 (703)
+|++||.+++..++..+++. +++++|++.++-.+..++..+-+. -...
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~-~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDR-RVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999988778888777 899999999887777666555311 1110
Q ss_pred --------------HHHHHHHH------H-------hcHHHHHHHh--h----------------ccccc---hhcCCCC
Q 005314 566 --------------AEVLAAAE------L-------ANAHQFISSL--K----------------QGYDT---IVGERGI 597 (703)
Q Consensus 566 --------------~ei~~A~~------~-------a~l~~~I~~L--p----------------~G~dT---~vGe~G~ 597 (703)
+++.+.+. . ..+.+.+..+ | .|++. .++.++.
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 00000000 0 0011122222 1 13333 3445554
Q ss_pred C--------CChhHHHHHHHHHHhccCC--CEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEE
Q 005314 598 Q--------LSGGQKQRVAIARAMVKAP--KILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIA 667 (703)
Q Consensus 598 ~--------LSGGQkQRiaIARAllk~p--~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~ 667 (703)
+ ||||||||++|||+|+.+| +||||||||++||+++...|.+.|.++.+++|+|+|||+++.+..||+|+
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~ 366 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHY 366 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEE
Confidence 4 8999999999999999999 99999999999999999999999999888999999999999999999999
Q ss_pred EE----eCCEEEEe
Q 005314 668 VV----KNGVIAEK 677 (703)
Q Consensus 668 vl----~~G~Ive~ 677 (703)
+| ++|+++..
T Consensus 367 ~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 367 KVEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEEETTEEEEE
T ss_pred EEEEeccCCceEEE
Confidence 99 99999764
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=8.2e-31 Score=308.17 Aligned_cols=215 Identities=26% Similarity=0.392 Sum_probs=161.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHc-C----CC---CCCCC-------------
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ-R----FY---DPDTG------------- 516 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~-g----~y---~p~~G------------- 516 (703)
.|+++|++. .+|+|+||+|++|+++||+|+||||||||+++|+ | .+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588998852 2699999999999999999999999999999864 2 11 12233
Q ss_pred eEEECCeeCCCC---CHH-------HHh---------cceEEEccCCCC---------------------C---------
Q 005314 517 HITLDGVEIQKL---QLK-------WLR---------QQMGLVSQEPVL---------------------F--------- 547 (703)
Q Consensus 517 ~I~idG~di~~~---~~~-------~lR---------~~i~~V~Qe~~L---------------------F--------- 547 (703)
.|.+||.++..- ++. ..| +.+||++|.+.+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 478898887432 111 111 346888885321 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCCh
Q 005314 548 -------------------------NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLSG 601 (703)
Q Consensus 548 -------------------------~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSG 601 (703)
+.|+.||+.+... . .++.+ ..+.+..+ |+.. ..+....+|||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~--~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS--I--PKIKR------KLETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS--C--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc--c--hhHHH------HHHHHHHc--CCCcccccCchhhCCH
Confidence 1255666655411 1 11111 12345555 5655 57788889999
Q ss_pred hHHHHHHHHHHhccCC---CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------eC
Q 005314 602 GQKQRVAIARAMVKAP---KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVV------KN 671 (703)
Q Consensus 602 GQkQRiaIARAllk~p---~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl------~~ 671 (703)
||||||+|||||+++| +||||||||++||+.+.+.+.+.|.++. +|+|+|+|||++..++.||+|++| ++
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCC
Confidence 9999999999999875 9999999999999999999999998864 589999999999999999999999 78
Q ss_pred CEEEEecChhHHhccCCcHHHH
Q 005314 672 GVIAEKGKHETLVHVKDGIYAS 693 (703)
Q Consensus 672 G~Ive~Gth~eLl~~~~g~Y~~ 693 (703)
|+|++.|+.+++.+. ...|..
T Consensus 929 G~Iv~~g~~~el~~~-~~~~t~ 949 (972)
T 2r6f_A 929 GQIVAVGTPEEVAEV-KESHTG 949 (972)
T ss_dssp CSEEEEESHHHHHTC-TTCHHH
T ss_pred CEEEEecCHHHHHhC-chhHHH
Confidence 999999999999875 444544
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=1.9e-30 Score=306.19 Aligned_cols=218 Identities=22% Similarity=0.362 Sum_probs=161.0
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHc-----CCCC---CCCCe-----------
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ-----RFYD---PDTGH----------- 517 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~-----g~y~---p~~G~----------- 517 (703)
..|+++|++. .+|+|+||+|++|+++||+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999852 2699999999999999999999999999999853 2221 23343
Q ss_pred --EEECCeeCCCC---CHH-------HH---------hcceEEEccCCCC---------------------C--------
Q 005314 518 --ITLDGVEIQKL---QLK-------WL---------RQQMGLVSQEPVL---------------------F-------- 547 (703)
Q Consensus 518 --I~idG~di~~~---~~~-------~l---------R~~i~~V~Qe~~L---------------------F-------- 547 (703)
|.+|+.++..- ++. .. .+..||++|.+.+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 56676666321 111 11 2456788775321 0
Q ss_pred --------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccc-hhcCCCCCCC
Q 005314 548 --------------------------NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDT-IVGERGIQLS 600 (703)
Q Consensus 548 --------------------------~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LS 600 (703)
+.|+.||+.+... . .++.+ ..+.+..+ |+.. ..+....+||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~--~--~~~~~------~~~~L~~l--gL~~~~l~~~~~~LS 865 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP--I--AGVHR------YLRTLVDV--GLGYVRLGQPAPTLS 865 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT--C--HHHHH------HHHHHHHT--TGGGSBTTCCGGGSC
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc--c--hHHHH------HHHHHHHc--CCCcccccCccccCC
Confidence 1245555555411 1 11111 12345555 5555 5788889999
Q ss_pred hhHHHHHHHHHHhccCC---CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------e
Q 005314 601 GGQKQRVAIARAMVKAP---KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVV------K 670 (703)
Q Consensus 601 GGQkQRiaIARAllk~p---~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl------~ 670 (703)
|||||||+|||||+++| +||||||||++||..+.+.+.+.|.++. .|+|+|+|+|++..++.||+|++| +
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~ 945 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAG 945 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCC
Confidence 99999999999999875 9999999999999999999999998864 589999999999999999999999 6
Q ss_pred CCEEEEecChhHHhccCCcHHHHHH
Q 005314 671 NGVIAEKGKHETLVHVKDGIYASLV 695 (703)
Q Consensus 671 ~G~Ive~Gth~eLl~~~~g~Y~~l~ 695 (703)
+|+|++.|+.+++.+. ...|...+
T Consensus 946 ~G~Iv~~G~~~el~~~-~~~~t~~~ 969 (993)
T 2ygr_A 946 GGTVVAQGTPEDVAAV-PASYTGKF 969 (993)
T ss_dssp CSEEEEEECHHHHHHC-TTCHHHHH
T ss_pred CCEEEEecCHHHHHhC-CHHHHHHH
Confidence 8999999999999875 44555443
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=2e-29 Score=269.34 Aligned_cols=202 Identities=21% Similarity=0.250 Sum_probs=147.5
Q ss_pred ceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC------------------------------------------------
Q 005314 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRF------------------------------------------------ 510 (703)
Q Consensus 479 ~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~------------------------------------------------ 510 (703)
+++|++.+| .++|+|+||||||||++.|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 678889999 9999999999999999999833
Q ss_pred --CCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCC-cccHHHHHhcCCCCCC---------------CHHHHHHHH
Q 005314 511 --YDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTVRVNIAYGKEGNA---------------TEAEVLAAA 572 (703)
Q Consensus 511 --y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF-~gTIreNI~~g~~~~~---------------t~~ei~~A~ 572 (703)
+.+.+|++.+||.+++..+...+.+.+++.+|+..++ .|+|.+|+.+. +.+. +.+++.+..
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3445679999999987667778888899999998866 89999999775 3210 001122211
Q ss_pred HHh------------c-HHHHHHHhhccccchhcC------CCCCCChhHHHHHHHHHHhc----cCCCEEEeeccCcCC
Q 005314 573 ELA------------N-AHQFISSLKQGYDTIVGE------RGIQLSGGQKQRVAIARAMV----KAPKILLLDEATSAL 629 (703)
Q Consensus 573 ~~a------------~-l~~~I~~Lp~G~dT~vGe------~G~~LSGGQkQRiaIARAll----k~p~ILlLDEaTSaL 629 (703)
... . .......|+.|+++.++. ...+||||||||++|||||+ ++|++||||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 0 001123466788776543 34699999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEE--EEEeCCEE-EEecChhH
Q 005314 630 DAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLI--AVVKNGVI-AEKGKHET 682 (703)
Q Consensus 630 D~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I--~vl~~G~I-ve~Gth~e 682 (703)
|+.+.+.+.+.|.++.+++|+|+|||++..+..||++ ++|++|+. +...+-++
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999887788999999999888999987 88888854 33333333
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=3.1e-30 Score=257.90 Aligned_cols=159 Identities=15% Similarity=0.210 Sum_probs=104.2
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRV 553 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIre 553 (703)
..+|+|+ ++|++++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+|++||||||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689995 99999999999999999999999999 99999994 333321 2234688999999998 67
Q ss_pred HH-hcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHH
Q 005314 554 NI-AYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAE 632 (703)
Q Consensus 554 NI-~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~ 632 (703)
|+ .++.+ . .+.+........+.+++.. |+ |||||++|||||+.+|+|||||||||+
T Consensus 78 nl~~~~~~-~--~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~---- 134 (208)
T 3b85_A 78 KIDPYLRP-L--HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT---- 134 (208)
T ss_dssp --CTTTHH-H--HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----
T ss_pred HHHHHHHH-H--HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----
Confidence 77 44310 0 0000000001112222222 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEE
Q 005314 633 SERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVI 674 (703)
Q Consensus 633 se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~I 674 (703)
+.+.+.+.|.++.+++|+| |||+++.+. ++...+||..
T Consensus 135 ~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 135 TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 8888999998875578888 999998654 4556677754
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.94 E-value=1.1e-30 Score=263.50 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=124.7
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH-HHHhcceEEEccCCCCCc-----
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL-KWLRQQMGLVSQEPVLFN----- 548 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~-~~lR~~i~~V~Qe~~LF~----- 548 (703)
.-|+|+||+|++|++++||||||||||||+++|+|++ | |+|.+ |+++..... ...++.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 887755432 235788999999886654
Q ss_pred ------ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH-----HHHhccCC
Q 005314 549 ------DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI-----ARAMVKAP 617 (703)
Q Consensus 549 ------gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI-----ARAllk~p 617 (703)
+++++| .|| . .++++.++++.. ....++ .+|||||+||++| ||+++++|
T Consensus 87 ~~~l~~~~~~~~-~~g-~---~~~~i~~~l~~~------------~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYG-T---LKSEYDKAKEQN------------KICLFE---MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp TCEEEEEEETTE-EEE-E---EHHHHHHHHHTT------------CEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred cchhhhhhcccc-cCC-C---cHHHHHHHHhCC------------CcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 445555 455 2 244555555432 222222 6899999999999 99999999
Q ss_pred CEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q 005314 618 KILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKN 671 (703)
Q Consensus 618 ~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~ 671 (703)
++++|||||+++|.++|..|++.+.+..+++| ++| ++.||.|+|+++
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999999999999988877777 788 588999998865
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=2.1e-27 Score=230.18 Aligned_cols=150 Identities=18% Similarity=0.230 Sum_probs=111.6
Q ss_pred ceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCC--CCcccHHHHHh
Q 005314 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPV--LFNDTVRVNIA 556 (703)
Q Consensus 479 ~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~--LF~gTIreNI~ 556 (703)
|+||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.++.++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 233444 67788762 23333332221
Q ss_pred cCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHH--
Q 005314 557 YGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESE-- 634 (703)
Q Consensus 557 ~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se-- 634 (703)
.. ....+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 64 -------------~~--------~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 -------------YI--------VSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp -------------HH--------HHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred -------------HH--------HHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 11 1223455777766654 45699999999999999999999999999999999944
Q ss_pred --------------HHHHHHHHHHc-CCceEEEEccCchHHhhcCEEE
Q 005314 635 --------------RVIQDALERVM-VGRTTVVIAHRLSTIRDADLIA 667 (703)
Q Consensus 635 --------------~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~ 667 (703)
+.+.+.|.++. +|.|+|+|||+++.+..++++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~~ 169 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFER 169 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEEE
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhcc
Confidence 77777766543 4899999999999998887753
No 71
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.93 E-value=1.8e-28 Score=262.31 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=120.5
Q ss_pred EEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEE
Q 005314 461 FQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLV 540 (703)
Q Consensus 461 ~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V 540 (703)
|+||+| | .++++++||+|++|+.++|+||||||||||+++|+|+++|++|.|+++|.+ ++....+|++++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 667777 6 258999999999999999999999999999999999999999999999976 33333456667766
Q ss_pred ccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEE
Q 005314 541 SQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKIL 620 (703)
Q Consensus 541 ~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~IL 620 (703)
+| |||+||++|||||.++|+++
T Consensus 223 ~g----------------------------------------------------------gg~~~r~~la~aL~~~p~il 244 (330)
T 2pt7_A 223 FG----------------------------------------------------------GNITSADCLKSCLRMRPDRI 244 (330)
T ss_dssp CB----------------------------------------------------------TTBCHHHHHHHHTTSCCSEE
T ss_pred eC----------------------------------------------------------CChhHHHHHHHHhhhCCCEE
Confidence 40 89999999999999999999
Q ss_pred EeeccCcCCCHHHHHHHHHHHHHHcCCc-eEEEEccCchHHhhcCEEEEEeCCEE
Q 005314 621 LLDEATSALDAESERVIQDALERVMVGR-TTVVIAHRLSTIRDADLIAVVKNGVI 674 (703)
Q Consensus 621 lLDEaTSaLD~~se~~v~~~l~~~~~~r-T~IvIaHrlsti~~aD~I~vl~~G~I 674 (703)
||||||+. .+.+.|.++..++ |+|+++|+++....||||++|++|+.
T Consensus 245 ildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 245 ILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp EECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 99999992 2566777666665 79999999999999999999998853
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=1.7e-25 Score=242.73 Aligned_cols=83 Identities=25% Similarity=0.369 Sum_probs=76.4
Q ss_pred CCCCCCChhHHHHHHHHHHhc------cCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEE
Q 005314 594 ERGIQLSGGQKQRVAIARAMV------KAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLI 666 (703)
Q Consensus 594 e~G~~LSGGQkQRiaIARAll------k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I 666 (703)
....+||||||||++|||||+ .+|++|||||||++||+++...+.+.|.++. .|+|+|+|||++..+..||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345689999999999999999 7999999999999999999999999998864 479999999999999999999
Q ss_pred EEEeCCEEEE
Q 005314 667 AVVKNGVIAE 676 (703)
Q Consensus 667 ~vl~~G~Ive 676 (703)
++|++|+|++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999985
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.92 E-value=1.1e-27 Score=233.56 Aligned_cols=154 Identities=13% Similarity=0.227 Sum_probs=114.7
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHH
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEV 568 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei 568 (703)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ |..+|+ ++.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-~~----- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-FF----- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET-TC-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh-cC-----
Confidence 689999999999999999999995 778888765554335678999999987 333444 2210 00
Q ss_pred HHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH-----hccCCCEEEeec--cCcCCCHHHHHHHHHHH
Q 005314 569 LAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA-----MVKAPKILLLDE--ATSALDAESERVIQDAL 641 (703)
Q Consensus 569 ~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA-----llk~p~ILlLDE--aTSaLD~~se~~v~~~l 641 (703)
+ .+..++..+.+||||||||++|||| ++.+|++||||| ||++||+.+.+.+.+.+
T Consensus 65 ----------------~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 65 ----------------T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp ----------------C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred ----------------C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 0 0145677888999999999999996 999999999999 99999999999999998
Q ss_pred HHHcCCceEEEEcc---CchHHhh-cCEEEEEeCCEEEE--ecChhHH
Q 005314 642 ERVMVGRTTVVIAH---RLSTIRD-ADLIAVVKNGVIAE--KGKHETL 683 (703)
Q Consensus 642 ~~~~~~rT~IvIaH---rlsti~~-aD~I~vl~~G~Ive--~Gth~eL 683 (703)
++ .+.|+|+++| +...+.. ||+ .+|+|++ ..+.+++
T Consensus 127 ~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 127 HD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIELTPENRDVI 168 (178)
T ss_dssp TC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEECCTTTTTTH
T ss_pred hc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEecCcCHHHH
Confidence 76 4677999986 6666654 666 6677776 3444443
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.92 E-value=3.3e-28 Score=269.08 Aligned_cols=195 Identities=16% Similarity=0.163 Sum_probs=159.7
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCe---eCCCCC----
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGV---EIQKLQ---- 529 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~---di~~~~---- 529 (703)
..++++||++.|+. ...+|+++ |+|.+||+++|+|+||||||||+++|+|+++|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46899999999973 35799999 999999999999999999999999999999999999999998 565432
Q ss_pred -HHHHhcceEEEccC--CCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 530 -LKWLRQQMGLVSQE--PVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 530 -~~~lR~~i~~V~Qe--~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
...+++.+++|+|+ +....-|+.+|+.+. . +.... +...+..+ =+...+||||| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-a------e~~~~-~~~~v~~~------------ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRI-A------EDFRD-RGQHVLLI------------MDSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-H------HHHHT-TTCEEEEE------------EECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHH-H------HHHHh-CCCCHHHH------------HHhHHHHHHHH-HH
Confidence 45688999999995 334567999998775 1 22110 00111111 12356899999 99
Q ss_pred HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-----Cc-----eEEEEccCchHHhhcCEEEEEeCCEEEE
Q 005314 607 VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-----GR-----TTVVIAHRLSTIRDADLIAVVKNGVIAE 676 (703)
Q Consensus 607 iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-----~r-----T~IvIaHrlsti~~aD~I~vl~~G~Ive 676 (703)
++|| +++|++ |++||+.+...+.+.+.++.+ |+ |++++||+++ ...||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 899998 999999999999999988755 53 9999999999 78899999999999999
Q ss_pred ecChhHHhc
Q 005314 677 KGKHETLVH 685 (703)
Q Consensus 677 ~Gth~eLl~ 685 (703)
.|++.++..
T Consensus 336 ~~~~~~~~~ 344 (438)
T 2dpy_A 336 SRRLAEAGH 344 (438)
T ss_dssp CHHHHHTTC
T ss_pred eCCHHHccC
Confidence 999988764
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=1.1e-26 Score=254.00 Aligned_cols=168 Identities=20% Similarity=0.195 Sum_probs=133.8
Q ss_pred cccccceeEEeeCCC--------------------EEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHH
Q 005314 474 VQIFRDLCLAIPSGK--------------------MVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 474 ~~vL~~isl~I~~G~--------------------~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~l 533 (703)
+.+|+++||+|++|+ .+||+||||||||||+++|.|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999998763
Q ss_pred hcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh--HHHHHHHHH
Q 005314 534 RQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG--QKQRVAIAR 611 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG--QkQRiaIAR 611 (703)
| .++++|++...+.|++||+.++. .. +++.+.++..++.+ ++..+ . |||| ||||++|||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~-~~---~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGS-TN---FPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAK 169 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGG-SS---CCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccc-hH---HHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHH
Confidence 2 28899998655789999998883 22 24555555555422 23222 2 9999 999999999
Q ss_pred Hhcc----------CCCEEEeeccCcCCCHHHHHHHHHHHHHHc------C----CceEEEEccCchH--Hhh-cCEEE
Q 005314 612 AMVK----------APKILLLDEATSALDAESERVIQDALERVM------V----GRTTVVIAHRLST--IRD-ADLIA 667 (703)
Q Consensus 612 Allk----------~p~ILlLDEaTSaLD~~se~~v~~~l~~~~------~----~rT~IvIaHrlst--i~~-aD~I~ 667 (703)
||.+ +|++++|||||++||+.+++.+.+.|.++. . .+++++.||.++. +.. ||+|.
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9999 999999999999999999999998887762 1 2456667899885 544 77774
No 76
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.90 E-value=1.9e-27 Score=246.05 Aligned_cols=175 Identities=21% Similarity=0.241 Sum_probs=149.5
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC-CCeEEECCeeCCCCCHHHHhcceEEEcc-----CCCCCc
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD-TGHITLDGVEIQKLQLKWLRQQMGLVSQ-----EPVLFN 548 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~-~G~I~idG~di~~~~~~~lR~~i~~V~Q-----e~~LF~ 548 (703)
++|+++| +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.++..+. +..+++|+| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 9999999999999999999999999999998 999999999886542 456788898 777889
Q ss_pred ccHHHHHhcCCCCCC-------CHHHHHHHHHHhcH-----------------HHH------------HHHhhccccchh
Q 005314 549 DTVRVNIAYGKEGNA-------TEAEVLAAAELANA-----------------HQF------------ISSLKQGYDTIV 592 (703)
Q Consensus 549 gTIreNI~~g~~~~~-------t~~ei~~A~~~a~l-----------------~~~------------I~~Lp~G~dT~v 592 (703)
.+|+.+++.. + +. +.+.+..+++.+.. +.. -..+++++++.|
T Consensus 89 ~~la~aL~~~-p-~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi 166 (261)
T 2eyu_A 89 DALRAALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 166 (261)
T ss_dssp HHHHHHHHHC-C-SEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEE
T ss_pred HHHHHHHhhC-C-CEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEE
Confidence 9999999885 3 33 67767776665431 111 124788999999
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCE--EEeeccCcCCCHHH---------HHHHHHHHHHHcCCceEEEEccCchH
Q 005314 593 GERGIQLSGGQKQRVAIARAMVKAPKI--LLLDEATSALDAES---------ERVIQDALERVMVGRTTVVIAHRLST 659 (703)
Q Consensus 593 Ge~G~~LSGGQkQRiaIARAllk~p~I--LlLDEaTSaLD~~s---------e~~v~~~l~~~~~~rT~IvIaHrlst 659 (703)
++++..+||| ||++|||+++.+|+| +|+||+||+||... +..++++++.+.+|+|++.++||++.
T Consensus 167 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 242 (261)
T 2eyu_A 167 SQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 242 (261)
T ss_dssp EEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHCS
T ss_pred EEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHhC
Confidence 9999999999 999999999999999 99999999999873 55789999999999999999999973
No 77
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=2e-23 Score=245.53 Aligned_cols=106 Identities=29% Similarity=0.416 Sum_probs=92.6
Q ss_pred cccch-hcCCCCCCChhHHHHHHHHHHhccCC--CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh
Q 005314 587 GYDTI-VGERGIQLSGGQKQRVAIARAMVKAP--KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRD 662 (703)
Q Consensus 587 G~dT~-vGe~G~~LSGGQkQRiaIARAllk~p--~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~ 662 (703)
|++.. .+..-.+|||||||||+|||||..+| ++|||||||++||++..+.+.+.|+++. .|.|+|+|+||+..++.
T Consensus 367 GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~ 446 (842)
T 2vf7_A 367 GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRR 446 (842)
T ss_dssp TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTT
T ss_pred CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence 55533 56677899999999999999999999 5999999999999999999999998875 48999999999999999
Q ss_pred cCEEEEE------eCCEEEEecChhHHhccCCcHHH
Q 005314 663 ADLIAVV------KNGVIAEKGKHETLVHVKDGIYA 692 (703)
Q Consensus 663 aD~I~vl------~~G~Ive~Gth~eLl~~~~g~Y~ 692 (703)
||+|++| ++|+++..|+.+++++.+.....
T Consensus 447 aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~~~~ 482 (842)
T 2vf7_A 447 ADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTG 482 (842)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECGGGGGGCTTCHHH
T ss_pred CCEEEEeCCCcccCCCEEEEecCHHHHHhchHHHHH
Confidence 9999999 79999999999999874333333
No 78
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.89 E-value=1.7e-26 Score=251.03 Aligned_cols=175 Identities=21% Similarity=0.242 Sum_probs=150.2
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC-CCeEEECCeeCCCCCHHHHhcceEEEcc-----CCCCCc
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPD-TGHITLDGVEIQKLQLKWLRQQMGLVSQ-----EPVLFN 548 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~-~G~I~idG~di~~~~~~~lR~~i~~V~Q-----e~~LF~ 548 (703)
++|++++ +++|+.++|+|||||||||++++|+|+|+|+ +|+|.+.|.++. + .+|+++++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3567765 8999999999999999999999999999998 899988776664 2 46889999999 999999
Q ss_pred ccHHHHHhcCCCCCC-------CHHHHHHHHHHhcHH-------------HHH----------------HHhhccccchh
Q 005314 549 DTVRVNIAYGKEGNA-------TEAEVLAAAELANAH-------------QFI----------------SSLKQGYDTIV 592 (703)
Q Consensus 549 gTIreNI~~g~~~~~-------t~~ei~~A~~~a~l~-------------~~I----------------~~Lp~G~dT~v 592 (703)
++|++|+++. + +. +++.+..+++.++.. +.+ ..+|+++++.|
T Consensus 200 ~~l~~~L~~~-p-d~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv 277 (372)
T 2ewv_A 200 DALRAALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 277 (372)
T ss_dssp HHHHHHTTSC-C-SEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEE
T ss_pred HHHHHHhhhC-c-CEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEE
Confidence 9999999985 4 44 777788888877531 122 23688999999
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCE--EEeeccCcCCCHH----H-----HHHHHHHHHHHcCCceEEEEccCchH
Q 005314 593 GERGIQLSGGQKQRVAIARAMVKAPKI--LLLDEATSALDAE----S-----ERVIQDALERVMVGRTTVVIAHRLST 659 (703)
Q Consensus 593 Ge~G~~LSGGQkQRiaIARAllk~p~I--LlLDEaTSaLD~~----s-----e~~v~~~l~~~~~~rT~IvIaHrlst 659 (703)
++++..+||| ||++|||+++.+|+| +|+||+||+||.. + +..++++++.+.+|+|++.++||++.
T Consensus 278 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 278 SQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 9999999999 999999999999999 9999999999975 3 55689999999999999999999984
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.89 E-value=4.6e-26 Score=241.48 Aligned_cols=181 Identities=17% Similarity=0.227 Sum_probs=135.3
Q ss_pred CCCCcEEEEEEEEEcCCCCCcccccceeEE-----------------------eeCCCEEEEEcCCCCChHHHHHhHcCC
Q 005314 454 NVKGDIEFQHITFKYPARPDVQIFRDLCLA-----------------------IPSGKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 454 ~~~~~I~~~~vsF~Y~~~~~~~vL~~isl~-----------------------I~~G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
...+.|+++||++.|. ++++++++. +++|+++||+|+||||||||+++|.|+
T Consensus 39 ~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 39 GLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 4456799999999993 577777765 899999999999999999999999999
Q ss_pred CCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhcccc-
Q 005314 511 YDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYD- 589 (703)
Q Consensus 511 y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d- 589 (703)
++|..|. +++++|+||+++|..|++||+.+.......+. .....+.+++..+..|+.
T Consensus 114 l~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~-----~d~~~~~~~L~~l~~~~~~ 171 (312)
T 3aez_A 114 LARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPES-----YNRRALMRFVTSVKSGSDY 171 (312)
T ss_dssp HHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG-----BCHHHHHHHHHHHHTTCSC
T ss_pred ccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChH-----HHHHHHHHHHHHhCCCccc
Confidence 9998774 57999999999999999999976421111110 111234556666666654
Q ss_pred chhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH--hhcCEEE
Q 005314 590 TIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTI--RDADLIA 667 (703)
Q Consensus 590 T~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti--~~aD~I~ 667 (703)
.. ..+|||||+||+++|||++.+|+|||||||++.+|+.. ..+.... + .+|+|+|..... +..+|..
T Consensus 172 ~~----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~ 240 (312)
T 3aez_A 172 AC----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFL 240 (312)
T ss_dssp EE----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHH
T ss_pred CC----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHH
Confidence 33 35799999999999999999999999999999998622 1222222 3 457778877664 3356665
Q ss_pred EEeCC
Q 005314 668 VVKNG 672 (703)
Q Consensus 668 vl~~G 672 (703)
.+.+|
T Consensus 241 ~~rd~ 245 (312)
T 3aez_A 241 AMRTT 245 (312)
T ss_dssp HHTTT
T ss_pred HHHhc
Confidence 55444
No 80
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.88 E-value=5.8e-26 Score=219.69 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=90.0
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCCCCC---CCeEEECCeeCCCCC---HHHHh-cceE----EEccCCCCCcccHHHHHh
Q 005314 488 KMVALVGESGSGKSTVISLLQRFYDPD---TGHITLDGVEIQKLQ---LKWLR-QQMG----LVSQEPVLFNDTVRVNIA 556 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y~p~---~G~I~idG~di~~~~---~~~lR-~~i~----~V~Qe~~LF~gTIreNI~ 556 (703)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999999 899999999998887 67888 5899 899999988 211
Q ss_pred cCCCCCCCHHHHHHHHHHhcHHHHHHH-hhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEE
Q 005314 557 YGKEGNATEAEVLAAAELANAHQFISS-LKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKIL 620 (703)
Q Consensus 557 ~g~~~~~t~~ei~~A~~~a~l~~~I~~-Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~IL 620 (703)
+ + +++ .+++++||.. || ||||.|+|+ |||||||||+||||++++|+|.
T Consensus 77 -~-----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V-----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C-----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C-----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 222 7899999999 99 999999995 9999999999999999999874
No 81
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=1.9e-24 Score=227.99 Aligned_cols=176 Identities=16% Similarity=0.240 Sum_probs=129.5
Q ss_pred ccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC----HHHH--hcceEEEccCCC-CCc-
Q 005314 477 FRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPV-LFN- 548 (703)
Q Consensus 477 L~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qe~~-LF~- 548 (703)
++++||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ++.| |.+|++|+|++. ++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999999987653 2334 468999999997 654
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC--EEEeeccC
Q 005314 549 DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK--ILLLDEAT 626 (703)
Q Consensus 549 gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~--ILlLDEaT 626 (703)
.|++|||.++.....+ . ..++.+|+.+.. +..+ .+|| |||++||||+..+|+ +|+|| ||
T Consensus 170 ~~v~e~l~~~~~~~~d-~---~lldt~gl~~~~-------~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD-V---VLCDTSGRLHTN-------YSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp HHHHHHHHHHHHTTCS-E---EEECCCCCSSCC-------HHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred HHHHHHHHHHHHcCCc-c---hHHhcCCCCcch-------hHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 5999999876211111 0 111222221111 1112 2477 999999999999999 99999 99
Q ss_pred cCCCHHHHHHHHHHHHHHcCCceEEEEcc---------CchHHh-hcCEEEEEeCCEEE
Q 005314 627 SALDAESERVIQDALERVMVGRTTVVIAH---------RLSTIR-DADLIAVVKNGVIA 675 (703)
Q Consensus 627 SaLD~~se~~v~~~l~~~~~~rT~IvIaH---------rlsti~-~aD~I~vl~~G~Iv 675 (703)
++||+.+.. +.+.+ ..+.|+|++|| .++.+. ..+.|.++.+|+.+
T Consensus 231 sglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 231 TGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 999998653 23322 23789999999 555553 47899999999654
No 82
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.88 E-value=9.8e-25 Score=226.80 Aligned_cols=148 Identities=18% Similarity=0.157 Sum_probs=98.3
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcc-cHHHHHhcCCCCC--CCH
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TVRVNIAYGKEGN--ATE 565 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~g-TIreNI~~g~~~~--~t~ 565 (703)
++|||||||||||||+++|+|++.|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.||.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998743 2456889999999998765 9999999994321 112
Q ss_pred HHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc
Q 005314 566 AEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM 645 (703)
Q Consensus 566 ~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~ 645 (703)
+.+.+.+. .++...++ ..||||||||++||||++. +++|||||++||+.. ..+++.|.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~--- 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLS--- 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHH---
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHH---
Confidence 23333332 34444433 2699999999999999876 999999999999986 33444443
Q ss_pred CCceEEEEccCchHHh
Q 005314 646 VGRTTVVIAHRLSTIR 661 (703)
Q Consensus 646 ~~rT~IvIaHrlsti~ 661 (703)
+..++|+|.|+..++.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999987764
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.87 E-value=2.2e-22 Score=216.70 Aligned_cols=82 Identities=24% Similarity=0.271 Sum_probs=76.4
Q ss_pred CCChhHHHHHHHHHHhc---------cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEE
Q 005314 598 QLSGGQKQRVAIARAMV---------KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAV 668 (703)
Q Consensus 598 ~LSGGQkQRiaIARAll---------k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~v 668 (703)
.|||||+||++|||+|+ .+|+|||||||||+||+...+.+.+.|.++. .|+|++|| +.. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998763 89999999 554 8999999
Q ss_pred EeCCEEEEecChhHHh
Q 005314 669 VKNGVIAEKGKHETLV 684 (703)
Q Consensus 669 l~~G~Ive~Gth~eLl 684 (703)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999874
No 84
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.87 E-value=8e-26 Score=224.43 Aligned_cols=169 Identities=19% Similarity=0.263 Sum_probs=135.8
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCCC-------------CCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCccc
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFYD-------------PDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 550 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gT 550 (703)
+++|++++||||||||||||+++|+|+|+ |..|+ +||+++..++.+.+|+.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 88998 699999999999999886 7999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH-HhccCCCEEEeeccCcCC
Q 005314 551 VRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR-AMVKAPKILLLDEATSAL 629 (703)
Q Consensus 551 IreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR-Allk~p~ILlLDEaTSaL 629 (703)
+++|+ || .++++++++++.+.+.-+ +-.|+|+++.... |+ .|| +++++|++++|||+|+++
T Consensus 76 ~~~n~-~g----~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~ 137 (198)
T 1lvg_A 76 FSGNL-YG----TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLR 137 (198)
T ss_dssp ETTEE-EE----EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHH
T ss_pred ecCcc-CC----CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhc
Confidence 99998 87 257889999876432211 2357888887532 22 677 899999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhc
Q 005314 630 DAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 630 D~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
|.++|+.|++.|.+..++ +.++| ++ +.+|.|+|+++ ...+.++|.+
T Consensus 138 d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 138 NTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp TCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 999999999999877554 46788 56 88999999885 3455666654
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.86 E-value=1.7e-23 Score=224.88 Aligned_cols=175 Identities=17% Similarity=0.250 Sum_probs=130.1
Q ss_pred cceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC----HHHH--hcceEEEccCCC-CC-cc
Q 005314 478 RDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPV-LF-ND 549 (703)
Q Consensus 478 ~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qe~~-LF-~g 549 (703)
.++||++++|++++|||+|||||||+++.|+|++.|++|+|.++|.|+.... +..| |.+|++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4678899999999999999999999999999999999999999999986642 2333 568999999987 55 56
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC--EEEeeccCc
Q 005314 550 TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK--ILLLDEATS 627 (703)
Q Consensus 550 TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~--ILlLDEaTS 627 (703)
|++|||.++.....+ . ..++.+|+.+... ..+ .+|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~d-~---~lldt~Gl~~~~~-------~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD-V---VLCDTSGRLHTNY-------SLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTCS-E---EEEECCCCSSCCH-------HHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCCH-H---HHHHhcCCChhhh-------hHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 999999876211111 0 1112222211111 111 2377 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHcCCceEEEEcc---------CchHHh-hcCEEEEEeCCEEE
Q 005314 628 ALDAESERVIQDALERVMVGRTTVVIAH---------RLSTIR-DADLIAVVKNGVIA 675 (703)
Q Consensus 628 aLD~~se~~v~~~l~~~~~~rT~IvIaH---------rlsti~-~aD~I~vl~~G~Iv 675 (703)
+||+.+.. +.+.+ ..+.|+|++|| .++.+. ..+.|..+..|+.+
T Consensus 289 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 289 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 99998653 23322 23789999999 455553 47799999998643
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.85 E-value=3.3e-24 Score=214.11 Aligned_cols=169 Identities=18% Similarity=0.160 Sum_probs=111.4
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcc-cHH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TVR 552 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~g-TIr 552 (703)
.++++| .+|++|++++|+||||||||||+++|+|+++ .|.+++.....-.....++.++|++|++.+|.. |++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999995 355554221111112346789999999988764 566
Q ss_pred HHHhcC-------CCCCCCHHHHHHHH----------HHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 553 VNIAYG-------KEGNATEAEVLAAA----------ELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 553 eNI~~g-------~~~~~t~~ei~~A~----------~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
+|+... .....+.+++.+.+ +..++.++....|. .|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEEE
Confidence 665311 00012233443332 33344444444332 344 8999
Q ss_pred CCCEEEeeccCcCC----CHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEe
Q 005314 616 APKILLLDEATSAL----DAESERVIQDALERVM--VGRTTVVIAHRLSTIR-DADLIAVVK 670 (703)
Q Consensus 616 ~p~ILlLDEaTSaL----D~~se~~v~~~l~~~~--~~rT~IvIaHrlsti~-~aD~I~vl~ 670 (703)
+|++++|||||+++ |+...+.+++.+.++. .+.|+|+|||+++.+. .||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7788999999988764 3789999999999875 599999985
No 87
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.84 E-value=8.4e-24 Score=208.01 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=124.2
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHH
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEA 566 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ 566 (703)
|++++|+|+||||||||+++|+|+++ ++| |.+||.++.++. .+++++|+++|+. .++ ++|+..- . ...+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~-~--~~~~ 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRV-G--LEPP 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEEC-C--CCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcc-c--ccCC
Confidence 78999999999999999999999999 999 999999987654 5789999999986 443 2333211 0 0000
Q ss_pred HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH-HHHH---HhccCCCEEEeec--cCcCCCHHHHHHHHHH
Q 005314 567 EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV-AIAR---AMVKAPKILLLDE--ATSALDAESERVIQDA 640 (703)
Q Consensus 567 ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi-aIAR---Allk~p~ILlLDE--aTSaLD~~se~~v~~~ 640 (703)
+.-.+..+|+.+..+|||||+++ +++| |++++|+|||||| ||..+|.+.-+.+.+.
T Consensus 70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 11234589999999999999999 6666 7899999999999 8888999877777766
Q ss_pred HHHHcCCceEEE--Ec--cCchHHhhcCEEEEEeCCEEEEec
Q 005314 641 LERVMVGRTTVV--IA--HRLSTIRDADLIAVVKNGVIAEKG 678 (703)
Q Consensus 641 l~~~~~~rT~Iv--Ia--Hrlsti~~aD~I~vl~~G~Ive~G 678 (703)
++. .+|+|+ |+ ||.+ +..+|+|..+++|+|++-.
T Consensus 132 l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 132 LST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 653 456664 44 9987 6778999999999999743
No 88
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.84 E-value=1.4e-25 Score=243.03 Aligned_cols=224 Identities=17% Similarity=0.078 Sum_probs=155.3
Q ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccc-CCCC
Q 005314 380 SFYAGARLVEA-GKTTFQEVFRVFFALSMAATGLSQSGILAPEASRAKSAIASVYAILDRKSKIDSSDESGTTIE-NVKG 457 (703)
Q Consensus 380 ~~~~g~~lv~~-g~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~~~~~~~~~~~~~~~-~~~~ 457 (703)
+.+.|++++.. |.+|.+.+.++..++.....+ .+....+.+..+..+..|++.++ ++.... ........ ...+
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~-~~~~~~ir~~~~~ 125 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEH-GTISVTIRKPSFT 125 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCT-TCCEEEEECCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCC-CCeEEEEEecCCC
Confidence 34556666665 889999998877666554433 12222222333333445666655 221111 00000000 0123
Q ss_pred cE---------EEEEEEEE---cCCCCCcccc---------cceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC
Q 005314 458 DI---------EFQHITFK---YPARPDVQIF---------RDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG 516 (703)
Q Consensus 458 ~I---------~~~~vsF~---Y~~~~~~~vL---------~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G 516 (703)
.+ +|+||+|+ |+.. +.++| +++||+|++|+.++|+||||||||||+++|+|+|+|++|
T Consensus 126 ~itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g 204 (361)
T 2gza_A 126 RRTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQR 204 (361)
T ss_dssp CCCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred CCCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence 45 89999999 9742 23566 999999999999999999999999999999999999999
Q ss_pred eEEECCeeCCCCCHHHHhcceEEEc-cCCCC---CcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchh
Q 005314 517 HITLDGVEIQKLQLKWLRQQMGLVS-QEPVL---FNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIV 592 (703)
Q Consensus 517 ~I~idG~di~~~~~~~lR~~i~~V~-Qe~~L---F~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~v 592 (703)
.|+++|. .++....+|+++++|+ |++.+ +..|+++||.++.. ..++..+..+++.+.+++++..+|.|++|.+
T Consensus 205 ~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l 281 (361)
T 2gza_A 205 LITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-MKPTRILLAELRGGEAYDFINVAASGHGGSI 281 (361)
T ss_dssp EEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTT-SCCSEEEESCCCSTHHHHHHHHHHTTCCSCE
T ss_pred EEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHhcCCCeEE
Confidence 9999985 4666666889999999 99887 88999999998843 3334444555566778999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHH
Q 005314 593 GERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 593 Ge~G~~LSGGQkQRiaIARA 612 (703)
++-+.+-..+..+||+....
T Consensus 282 ~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 282 TSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEEECSSHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHHHHh
Confidence 99888889999999988763
No 89
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.83 E-value=2.1e-22 Score=216.22 Aligned_cols=194 Identities=17% Similarity=0.186 Sum_probs=148.9
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC-------CCH
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK-------LQL 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~-------~~~ 530 (703)
-++.+++++.|+. ...+++++ |+|.+||+++|+|+||||||||+++|+|+++|+.|.|.++|.+.++ +..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 5788999999973 35799999 9999999999999999999999999999999999999999965322 122
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchh-cCCCCCCChhHHHHHHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIV-GERGIQLSGGQKQRVAI 609 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~v-Ge~G~~LSGGQkQRiaI 609 (703)
..+++.+.+++|... ...+++..+.....+.++... .|.+..+ -+.-.+||+|| ||+++
T Consensus 122 ~~~~~~v~~~~~~~~-----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHTTEEEEEECTTS-----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhceEEEEECCCC-----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHH
Confidence 335556666666321 112344444444444444332 2433211 13456899999 99999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc---CCc-----eEEEEccCchHHhhcCEEEEEeCCEEEEecChh
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVM---VGR-----TTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~---~~r-----T~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~ 681 (703)
| +.+|++ |++||+.....+.+.++++. +|. |++++||+++ -.-||+++++.+|+|+..|+.+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 689988 99999999999999998875 366 8999999999 6779999999999999998877
Q ss_pred HHh
Q 005314 682 TLV 684 (703)
Q Consensus 682 eLl 684 (703)
++.
T Consensus 252 ~~~ 254 (347)
T 2obl_A 252 EEN 254 (347)
T ss_dssp TTT
T ss_pred HcC
Confidence 753
No 90
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=2.9e-21 Score=229.03 Aligned_cols=171 Identities=21% Similarity=0.372 Sum_probs=123.0
Q ss_pred HHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHH
Q 005314 502 TVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFI 581 (703)
Q Consensus 502 TL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I 581 (703)
|+-.+.-+.+.|..|+|+++|++|.++....+.+.++++.+ +.+......--.++.+..+. ..+++
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~~~~~~~~~~~~~--~~~~L 448 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTEREREIVGELLKEIEK--RLEFL 448 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTTTTHHHHHHHHHH--HHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHHHHHHhhHHHHHH--HHHHH
Confidence 34455567789999999999999865443333333333211 11110000001112221111 22344
Q ss_pred HHhhccccch-hcCCCCCCChhHHHHHHHHHHhccCCC--EEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCc
Q 005314 582 SSLKQGYDTI-VGERGIQLSGGQKQRVAIARAMVKAPK--ILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRL 657 (703)
Q Consensus 582 ~~Lp~G~dT~-vGe~G~~LSGGQkQRiaIARAllk~p~--ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrl 657 (703)
..+ |++.. ......+|||||||||+|||||..+|+ +|||||||++||+.....+.+.|+++. .|+|+|+|+|++
T Consensus 449 ~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~ 526 (916)
T 3pih_A 449 VDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDE 526 (916)
T ss_dssp HTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCH
T ss_pred HHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 444 55432 456677999999999999999999887 999999999999999999999999875 489999999999
Q ss_pred hHHhhcCEEEEE------eCCEEEEecChhHHhccCC
Q 005314 658 STIRDADLIAVV------KNGVIAEKGKHETLVHVKD 688 (703)
Q Consensus 658 sti~~aD~I~vl------~~G~Ive~Gth~eLl~~~~ 688 (703)
..+..||+|++| ++|+|+..|+++++++.+.
T Consensus 527 ~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~ 563 (916)
T 3pih_A 527 EVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPD 563 (916)
T ss_dssp HHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSCT
T ss_pred HHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCch
Confidence 999999999999 8999999999999987533
No 91
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.81 E-value=3.3e-23 Score=206.99 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=110.9
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcc---cHHHHHhcC--
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND---TVRVNIAYG-- 558 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~g---TIreNI~~g-- 558 (703)
.++|+++||+|+||||||||+++|.|++.| ++++|+||+++|+. |+++|+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999875 69999999998854 677776543
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcC-------CCH
Q 005314 559 KEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSA-------LDA 631 (703)
Q Consensus 559 ~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSa-------LD~ 631 (703)
.+...+.+++.++++..++.+++.. | ++++..|+++. |+||+++||+++.+|+++++||||++ ||+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~ 133 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDA 133 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEEC
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeC
Confidence 2223455677777766655443322 2 33333333321 46899999999999999999999999 999
Q ss_pred HHHHHHHHHHHHH--cCCceEEEEccCc
Q 005314 632 ESERVIQDALERV--MVGRTTVVIAHRL 657 (703)
Q Consensus 632 ~se~~v~~~l~~~--~~~rT~IvIaHrl 657 (703)
.++..+++.+.+. .+|+|++.++|+.
T Consensus 134 ~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 134 DADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998764 3589999999984
No 92
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.81 E-value=1.5e-22 Score=219.88 Aligned_cols=148 Identities=20% Similarity=0.311 Sum_probs=113.5
Q ss_pred cccceeEEeeC--CCEEEEEcCCCCChHHHHHhHcCCCCCCC----CeEEE----CCeeCCCCCHHHHhcceEEEccCCC
Q 005314 476 IFRDLCLAIPS--GKMVALVGESGSGKSTVISLLQRFYDPDT----GHITL----DGVEIQKLQLKWLRQQMGLVSQEPV 545 (703)
Q Consensus 476 vL~~isl~I~~--G~~vaiVG~SGsGKSTL~~lL~g~y~p~~----G~I~i----dG~di~~~~~~~lR~~i~~V~Qe~~ 545 (703)
+.+.++++|++ |+++||||+||||||||+++|+|+|+|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35689999999 99999999999999999999999999999 99987 46666 5666666 56999999999
Q ss_pred CCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhcc--ccchh-c-------CCCCCCChhHHHHHHHHHHh--
Q 005314 546 LFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQG--YDTIV-G-------ERGIQLSGGQKQRVAIARAM-- 613 (703)
Q Consensus 546 LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G--~dT~v-G-------e~G~~LSGGQkQRiaIARAl-- 613 (703)
+|++|++|||.++ ..+..+..+...........++..++.+ ++..+ + ++|.++||||+||++|+|+|
T Consensus 235 ~~~~t~~~nl~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 235 DYAVRHSHKIAFI-DTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHHHHCSSEEEE-SSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HHHHhccCCEEEE-eCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 9999999999998 3344455566666555667778888765 44422 3 67788899999999999998
Q ss_pred -cc--CCCEEEeeccC
Q 005314 614 -VK--APKILLLDEAT 626 (703)
Q Consensus 614 -lk--~p~ILlLDEaT 626 (703)
++ +++|+++||||
T Consensus 314 l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 314 LLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHGGGCCCEEEECSS
T ss_pred HHHHcCCCEEEeCCCC
Confidence 77 78999999997
No 93
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=3.6e-20 Score=210.10 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=71.5
Q ss_pred CCC-ChhHHHHHHHHHHhccCC--CEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q 005314 597 IQL-SGGQKQRVAIARAMVKAP--KILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672 (703)
Q Consensus 597 ~~L-SGGQkQRiaIARAllk~p--~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G 672 (703)
.+| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|.++.+++|+|+|||++..+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 456 999999999999999999 9999999999999999999999999887789999999999999999999999654
No 94
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.81 E-value=1.9e-20 Score=197.13 Aligned_cols=181 Identities=14% Similarity=0.116 Sum_probs=125.3
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC-eEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHH
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG-HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRV 553 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G-~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIre 553 (703)
++|+++++.+++|+.++|+|+||||||||++.|++.+.|.+| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 579999999999999999999999999999999999999988 78665433 3566676666666655432 3345
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH-HHHHHHHHHhccCCCEEEeeccCc---C-
Q 005314 554 NIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ-KQRVAIARAMVKAPKILLLDEATS---A- 628 (703)
Q Consensus 554 NI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ-kQRiaIARAllk~p~ILlLDEaTS---a- 628 (703)
|+..+ . .++++..++++ +++...+-+ +.+....+|.+| +||+. |+|+..+|+++||||||+ +
T Consensus 97 ~l~~~-~--~~~~~~~~~~~-----~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 97 SLKRE-I--IENGKFDQWFD-----ELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp HHHHH-H--HHHTHHHHHHH-----HHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred ccccC-C--CCHHHHHHHHH-----HHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 55544 1 22333333222 122222222 223335689999 77777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHHHcC--CceEEEEccCc--h--------------------HH-hhcCEEEEEeCCEE
Q 005314 629 --LDA-ESERVIQDALERVMV--GRTTVVIAHRL--S--------------------TI-RDADLIAVVKNGVI 674 (703)
Q Consensus 629 --LD~-~se~~v~~~l~~~~~--~rT~IvIaHrl--s--------------------ti-~~aD~I~vl~~G~I 674 (703)
+|. +....+.+.|.++.+ ++|+|+++|.. . .+ ..||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 455678888877643 89999999995 3 44 46999999998875
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.81 E-value=4.9e-22 Score=225.90 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=125.3
Q ss_pred EcCCCCCcccccceeE-EeeCCCEEEEEcCCCCChHHHHHh--HcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccC
Q 005314 467 KYPARPDVQIFRDLCL-AIPSGKMVALVGESGSGKSTVISL--LQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQE 543 (703)
Q Consensus 467 ~Y~~~~~~~vL~~isl-~I~~G~~vaiVG~SGsGKSTL~~l--L~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe 543 (703)
+|++ ..++|+++|| .|++|++++|+||||||||||+++ +.|+++|.+|.|.++|.+. ..+....++.+|+++|+
T Consensus 20 ~~~~--g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~ 96 (525)
T 1tf7_A 20 KMRT--MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAK 96 (525)
T ss_dssp EECC--CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHH
T ss_pred cccC--CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHH
Confidence 4553 3579999999 999999999999999999999999 7899999999999999883 23345567889999999
Q ss_pred CCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEee
Q 005314 544 PVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLD 623 (703)
Q Consensus 544 ~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLD 623 (703)
+... +|+.+-...+ . ++..++++..++.++....| ..|||| +|++++||
T Consensus 97 ~~~~-----~~l~~~~~~~-~-~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilD 145 (525)
T 1tf7_A 97 LVDE-----GKLFILDASP-D-PEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSID 145 (525)
T ss_dssp HHHT-----TSEEEEECCC-C-SSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEE
T ss_pred hhcc-----CcEEEEecCc-c-cchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEEC
Confidence 7521 1222211100 0 01112223334444444333 234566 47799999
Q ss_pred ccCcC-----CCHHHHHHHHHHHHHHc-CCceEEEEccCchHH---------hh-cCEEEEEeCC
Q 005314 624 EATSA-----LDAESERVIQDALERVM-VGRTTVVIAHRLSTI---------RD-ADLIAVVKNG 672 (703)
Q Consensus 624 EaTSa-----LD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti---------~~-aD~I~vl~~G 672 (703)
|||+. ||+...+.+.+.+..+. .|+|+|+|+|++..+ .. ||+|++|++|
T Consensus 146 e~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 146 SVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 99985 58999999999888764 489999999999874 44 9999999983
No 96
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.79 E-value=1e-18 Score=187.63 Aligned_cols=75 Identities=27% Similarity=0.369 Sum_probs=68.3
Q ss_pred CCCCChhHHH------HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEE
Q 005314 596 GIQLSGGQKQ------RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAV 668 (703)
Q Consensus 596 G~~LSGGQkQ------RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~v 668 (703)
-.+||||||| |+++|||++.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+......||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 7788999999999999999999999999999999998754 47899999999888888999999
Q ss_pred Ee
Q 005314 669 VK 670 (703)
Q Consensus 669 l~ 670 (703)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 97
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=1.1e-19 Score=214.04 Aligned_cols=153 Identities=21% Similarity=0.331 Sum_probs=119.7
Q ss_pred CCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHH-------HHHHHHHhcHHHHHHH
Q 005314 511 YDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAE-------VLAAAELANAHQFISS 583 (703)
Q Consensus 511 y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~e-------i~~A~~~a~l~~~I~~ 583 (703)
|.|....|+|+|++|.+ +...||.|++.|..+-..++++ +.+..+. + +++..
T Consensus 432 l~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~R--l-~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR--L-GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHH--H-HHHHH
T ss_pred cCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--H-HHhhh
Confidence 57888999999987643 3466888888886332334421 1122222 2 23444
Q ss_pred hhccccch-hcCCCCCCChhHHHHHHHHHHhccCC--CEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH
Q 005314 584 LKQGYDTI-VGERGIQLSGGQKQRVAIARAMVKAP--KILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLST 659 (703)
Q Consensus 584 Lp~G~dT~-vGe~G~~LSGGQkQRiaIARAllk~p--~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlst 659 (703)
+ |++.. ......+|||||||||+||+||..+| ++|||||||++||+.....+.+.|+++. .|.|+|+|+||+..
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 568 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 4 55432 45566799999999999999999985 9999999999999999999999998875 48999999999999
Q ss_pred HhhcCEEEEE------eCCEEEEecChhHHhcc
Q 005314 660 IRDADLIAVV------KNGVIAEKGKHETLVHV 686 (703)
Q Consensus 660 i~~aD~I~vl------~~G~Ive~Gth~eLl~~ 686 (703)
++.||+|++| .+|+|+..|+.+++++.
T Consensus 569 i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 569 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999 78999999999999864
No 98
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.78 E-value=1.6e-19 Score=217.71 Aligned_cols=170 Identities=20% Similarity=0.157 Sum_probs=123.0
Q ss_pred CcEEEEE-----EEEEcCCCCCcccccceeEEeeC-------CCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCee
Q 005314 457 GDIEFQH-----ITFKYPARPDVQIFRDLCLAIPS-------GKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVE 524 (703)
Q Consensus 457 ~~I~~~~-----vsF~Y~~~~~~~vL~~isl~I~~-------G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~d 524 (703)
+.|+++| |++.|++ +..|++|++|++++ |++++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999953 35799999999988 999999999999999999999 99853
Q ss_pred CCCCCHHHHhcceE-EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhH
Q 005314 525 IQKLQLKWLRQQMG-LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 525 i~~~~~~~lR~~i~-~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 603 (703)
+.++| ||||++. .-|+.|||... - ++.+.+. .|. ..+|+++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r-i---------------g~~d~~~---~~~--------stf~~em 856 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR-L---------------GASDRIM---SGE--------STFFVEL 856 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE-C---------------C--------------------CHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH-c---------------CCHHHHh---hch--------hhhHHHH
Confidence 35777 9999983 66777887421 1 1112111 122 3467776
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHH-HHHHHHHHHHHc-C-CceEEEEccCchHHhh-cCEEEEEeCCEEE--Ee
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAES-ERVIQDALERVM-V-GRTTVVIAHRLSTIRD-ADLIAVVKNGVIA--EK 677 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~s-e~~v~~~l~~~~-~-~rT~IvIaHrlsti~~-aD~I~vl~~G~Iv--e~ 677 (703)
++ +++||+++.+|+++||||||+++|+.. ...+++.|+.+. + ++|+|++||.+..+.. +|++.|+ +|+++ +.
T Consensus 857 ~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~ 934 (1022)
T 2o8b_B 857 SE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVE 934 (1022)
T ss_dssp HH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC--
T ss_pred HH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEe
Confidence 65 999999999999999999999999986 455677776654 3 7899999999998865 8999886 58887 55
Q ss_pred cCh
Q 005314 678 GKH 680 (703)
Q Consensus 678 Gth 680 (703)
|+.
T Consensus 935 ~~~ 937 (1022)
T 2o8b_B 935 NEC 937 (1022)
T ss_dssp ---
T ss_pred cCc
Confidence 543
No 99
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.78 E-value=8.4e-21 Score=194.45 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=110.1
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHH
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVR 552 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIr 552 (703)
+.++|+|+||++++|+++||+||||||||||+++|.|++ |.+.+| ..++.+++++|++....-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 567999999999999999999999999999999999977 776665 367899999999744456999
Q ss_pred HHHhcCCC-CC------CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeecc
Q 005314 553 VNIAYGKE-GN------ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEA 625 (703)
Q Consensus 553 eNI~~g~~-~~------~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEa 625 (703)
+|+.+... .. .+.+++. +.+..+.++.+..+ ..||+||+||+++ |+++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMH---------RTLKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHH---------HHHHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHH---------HHHHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 99875421 01 1122222 23344444555443 5799999999998 789999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hh-cCEEEEEeCCEEEEecChhHHhc
Q 005314 626 TSALDAESERVIQDALERVMVGRTTVVIAHRLSTI-RD-ADLIAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 626 TSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti-~~-aD~I~vl~~G~Ive~Gth~eLl~ 685 (703)
....|.. +.+. .+.|++++||...-+ +. ++.+ ++|+ +.+++++
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8887764 2222 378999999974433 43 3334 6674 5666654
No 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=8e-19 Score=165.34 Aligned_cols=88 Identities=25% Similarity=0.324 Sum_probs=76.6
Q ss_pred cccchh-----cCCCCCCChhHHHHHHHH------HHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEc
Q 005314 587 GYDTIV-----GERGIQLSGGQKQRVAIA------RAMVKAPKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIA 654 (703)
Q Consensus 587 G~dT~v-----Ge~G~~LSGGQkQRiaIA------RAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIa 654 (703)
+|++.+ .....+||||||||++|| ||++.+|++|||||||++||+++.+.+.+.|.++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677765 234679999999999876 99999999999999999999999999999998864 478999999
Q ss_pred cCchHHhhcCEEEEE--eCCEE
Q 005314 655 HRLSTIRDADLIAVV--KNGVI 674 (703)
Q Consensus 655 Hrlsti~~aD~I~vl--~~G~I 674 (703)
|++.....||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999777789999999 56643
No 101
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.77 E-value=2.2e-20 Score=201.17 Aligned_cols=167 Identities=20% Similarity=0.169 Sum_probs=122.7
Q ss_pred ccccce-eEEeeCCCEEEEEcCCCCChHHHHHhHcCCC--CCCC----Ce-EEECCeeCCCCCHHHHhcceEEEccCCCC
Q 005314 475 QIFRDL-CLAIPSGKMVALVGESGSGKSTVISLLQRFY--DPDT----GH-ITLDGVEIQKLQLKWLRQQMGLVSQEPVL 546 (703)
Q Consensus 475 ~vL~~i-sl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y--~p~~----G~-I~idG~di~~~~~~~lR~~i~~V~Qe~~L 546 (703)
+.|+.+ ++.|++|++++|+||+|||||||++.+++.+ +|+. |. |+||+.+.. .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 346665 6899999999999999999999999999998 6666 68 999997652 35678999999999
Q ss_pred CcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc-------cCCCE
Q 005314 547 FNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV-------KAPKI 619 (703)
Q Consensus 547 F~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll-------k~p~I 619 (703)
+..|+.+||.+... .+ |++|+|++.+||+++ .+|++
T Consensus 192 ~~~~v~~ni~~~~~--~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 192 DPDEVLKHIYVARA--FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp CHHHHGGGEEEEEC--CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred CHHHHhhCEEEEec--CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 99999999988732 11 345777777777777 68999
Q ss_pred EEeeccCcCCCHHH------------HHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCEEEEecChhHHh
Q 005314 620 LLLDEATSALDAES------------ERVIQDALERVM--VGRTTVVIAHRLSTIRD-ADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 620 LlLDEaTSaLD~~s------------e~~v~~~l~~~~--~~rT~IvIaHrlsti~~-aD~I~vl~~G~Ive~Gth~eLl 684 (703)
||+||||+.+|++. -+.+...|.++. .++|+|+++|....... ++.+.+...|++++.+.|..|.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 99999999999963 134444555443 37899999998875532 3456788889999988887764
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.76 E-value=2e-19 Score=210.68 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=116.2
Q ss_pred CCcEEEEEEEEEcCCC--CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-CCCCeEEECCeeCCCCCHHH
Q 005314 456 KGDIEFQHITFKYPAR--PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-PDTGHITLDGVEIQKLQLKW 532 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~--~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-p~~G~I~idG~di~~~~~~~ 532 (703)
.+.|++++. ++|-- .+..|++|+||+ |++++|+|||||||||+++++.|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 567999987 56641 135799999999 99999999999999999999999874 7888753 1 1
Q ss_pred HhcceEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 533 LRQQMGLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 533 lR~~i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
.+..+++|+| +|.. |+.|||..| +|+|++|++.+|+
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g----------------------------------------~S~~~~e~~~la~ 648 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG----------------------------------------KSTFMVEMEEVAL 648 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C----------------------------------------CSHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHhc----------------------------------------ccHHHHHHHHHHH
Confidence 2467899887 5543 666666443 4789999999999
Q ss_pred Hh--ccCCCEEEeecc---CcCCCHHHH-HHHHHHHHHHcCCceEEEEccCchHHhhc
Q 005314 612 AM--VKAPKILLLDEA---TSALDAESE-RVIQDALERVMVGRTTVVIAHRLSTIRDA 663 (703)
Q Consensus 612 Al--lk~p~ILlLDEa---TSaLD~~se-~~v~~~l~~~~~~rT~IvIaHrlsti~~a 663 (703)
++ +.+|+++||||| ||+||..+. ..+.+.|.+ .++|+|++||.......|
T Consensus 649 il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 649 ILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 99 999999999999 999999876 578888876 489999999998877655
No 103
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=2.8e-18 Score=202.88 Aligned_cols=141 Identities=23% Similarity=0.366 Sum_probs=110.1
Q ss_pred CCCcccHHHHHhcCCCCCCCHHH--H-----HHHHHHhcHHHHHHHhhccccch-hcCCCCCCChhHHHHHHHHHHhccC
Q 005314 545 VLFNDTVRVNIAYGKEGNATEAE--V-----LAAAELANAHQFISSLKQGYDTI-VGERGIQLSGGQKQRVAIARAMVKA 616 (703)
Q Consensus 545 ~LF~gTIreNI~~g~~~~~t~~e--i-----~~A~~~a~l~~~I~~Lp~G~dT~-vGe~G~~LSGGQkQRiaIARAllk~ 616 (703)
.+++.||.|++.|..+-..+.++ + .+..+. + +++..+ |++.. ....-.+|||||||||+||+||..+
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~R--l-~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSR--L-GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHH--H-HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHH--H-HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 46788999999987433344421 1 111111 1 234443 55532 4566779999999999999999998
Q ss_pred --CCEEEeeccCcCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------eCCEEEEecChhHHhccC
Q 005314 617 --PKILLLDEATSALDAESERVIQDALERVM-VGRTTVVIAHRLSTIRDADLIAVV------KNGVIAEKGKHETLVHVK 687 (703)
Q Consensus 617 --p~ILlLDEaTSaLD~~se~~v~~~l~~~~-~~rT~IvIaHrlsti~~aD~I~vl------~~G~Ive~Gth~eLl~~~ 687 (703)
|+||||||||++||+.....+.+.|+++. .|.|+|+|+||+..++.||+|++| ++|+|+..|+.+++++.+
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~~ 619 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNK 619 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHCT
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhhh
Confidence 58999999999999999999999998864 589999999999999999999999 689999999999998743
Q ss_pred CcH
Q 005314 688 DGI 690 (703)
Q Consensus 688 ~g~ 690 (703)
+..
T Consensus 620 ~~l 622 (993)
T 2ygr_A 620 DSI 622 (993)
T ss_dssp TCH
T ss_pred HHH
Confidence 333
No 104
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.76 E-value=1.6e-18 Score=192.11 Aligned_cols=73 Identities=26% Similarity=0.330 Sum_probs=68.1
Q ss_pred CCChhHHHHHHHHHHhc----cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEEe
Q 005314 598 QLSGGQKQRVAIARAMV----KAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVVIAHRLSTIRDADLIAVVK 670 (703)
Q Consensus 598 ~LSGGQkQRiaIARAll----k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~IvIaHrlsti~~aD~I~vl~ 670 (703)
+||||||||++|||+|+ ++|++||||||||+||+.....+.+.|.+... +.|+|+|||+...+..||++++|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999998 78999999999999999999999999988753 679999999999999999999996
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=4.6e-19 Score=201.38 Aligned_cols=152 Identities=14% Similarity=0.079 Sum_probs=117.9
Q ss_pred eEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHh-cCC
Q 005314 481 CLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIA-YGK 559 (703)
Q Consensus 481 sl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~-~g~ 559 (703)
+..|++|++++|+|+||||||||++.+++...|. |+ +.+.+++|++ ..++++|.. +|
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~---~~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEES---RAQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSC---HHHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCC---HHHHHHHHHHcC-
Confidence 4489999999999999999999999999998885 53 1256777876 246666653 33
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHH-----HH
Q 005314 560 EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAE-----SE 634 (703)
Q Consensus 560 ~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~-----se 634 (703)
.+.++ +.. .|+..........|||||+||+++||++..+|++||+| ||++||.. ..
T Consensus 333 ---~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 333 ---MDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ---CCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ---CCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 22222 111 23333344455689999999999999999999999999 99999998 88
Q ss_pred HHHHHHHHHHc-CCceEEEEccCc----------hHHh-hcCEEEEEeCCE
Q 005314 635 RVIQDALERVM-VGRTTVVIAHRL----------STIR-DADLIAVVKNGV 673 (703)
Q Consensus 635 ~~v~~~l~~~~-~~rT~IvIaHrl----------sti~-~aD~I~vl~~G~ 673 (703)
+.+.+.+..+. .|.|+|+|+|.. ..+. .||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 88888776654 489999999998 5554 599999999986
No 106
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.75 E-value=2.4e-19 Score=180.72 Aligned_cols=147 Identities=21% Similarity=0.235 Sum_probs=103.3
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-------CCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHH
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDP-------DTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNI 555 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-------~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI 555 (703)
-|++|++++|+||||||||||+++|+|.+.| ..|.|.+++.+. +. ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999996665 445888888653 11 2457788888888888999999
Q ss_pred hcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh-------ccCCCEEEeeccCcC
Q 005314 556 AYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM-------VKAPKILLLDEATSA 628 (703)
Q Consensus 556 ~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl-------lk~p~ILlLDEaTSa 628 (703)
.+... .+..+ |++++..++++ ..+|++++|||||+.
T Consensus 95 ~~~~~--~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 95 YVARA--FNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp EEEEC--CSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred EEEec--CChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 88732 22211 11222222222 348999999999999
Q ss_pred CCHH-------HH-----HHHHHHHHHHc--CCceEEEEcc----CchHHhh-cCEEEEEeCC
Q 005314 629 LDAE-------SE-----RVIQDALERVM--VGRTTVVIAH----RLSTIRD-ADLIAVVKNG 672 (703)
Q Consensus 629 LD~~-------se-----~~v~~~l~~~~--~~rT~IvIaH----rlsti~~-aD~I~vl~~G 672 (703)
+|++ .+ +.+.+.|.++. .+.|+|+|+| ....+.. ||++++|++|
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9984 22 25666665543 3899999999 4444654 9999999875
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.75 E-value=1.3e-20 Score=217.11 Aligned_cols=190 Identities=17% Similarity=0.289 Sum_probs=125.1
Q ss_pred cEEEEEEEEEcCCCCCcccccce----------eEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-CCCeEEECCeeCC
Q 005314 458 DIEFQHITFKYPARPDVQIFRDL----------CLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-DTGHITLDGVEIQ 526 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~i----------sl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-~~G~I~idG~di~ 526 (703)
.|+++|+++.|+.. ..++|+.+ +|+++. +||||+||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999742 23455544 367774 999999999999999999999989 7999999999963
Q ss_pred CC---CHHHHhcceEEEccCCCCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh
Q 005314 527 KL---QLKWLRQQMGLVSQEPVLFN-DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG 602 (703)
Q Consensus 527 ~~---~~~~lR~~i~~V~Qe~~LF~-gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 602 (703)
.. ....+|++|+|++|++.++. .|++|||.++ . .. + +..+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-~------------~~------~-----------~~~~~~~s-- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-Q------------NA------I-----------AGEGMGIS-- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-H------------HH------H-----------HCSSSCCC--
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHH-H------------HH------h-----------cCCccccc--
Confidence 22 23568899999999998865 4999998654 1 00 0 01111222
Q ss_pred HHHHHHHHHHhccCCCEEEeecc------CcCCCHHHHHHHHHHHHHHcC---CceEEEEccCchH--------Hhh---
Q 005314 603 QKQRVAIARAMVKAPKILLLDEA------TSALDAESERVIQDALERVMV---GRTTVVIAHRLST--------IRD--- 662 (703)
Q Consensus 603 QkQRiaIARAllk~p~ILlLDEa------TSaLD~~se~~v~~~l~~~~~---~rT~IvIaHrlst--------i~~--- 662 (703)
++++.++++...+|+++|+||| |++||+.+++.+.+.+.++.+ +-++++++|.+.. ++.
T Consensus 134 -~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~ 212 (608)
T 3szr_A 134 -HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP 212 (608)
T ss_dssp -SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS
T ss_pred -hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh
Confidence 3556666666779999999999 999999999999999988643 3456778999762 222
Q ss_pred --cCEEEEEeCCEEEEecChhHHh
Q 005314 663 --ADLIAVVKNGVIAEKGKHETLV 684 (703)
Q Consensus 663 --aD~I~vl~~G~Ive~Gth~eLl 684 (703)
...|.|+.++.+++.|+.++++
T Consensus 213 ~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 213 EGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SCCSEEEEEECGGGSSSSSTTCCC
T ss_pred cCCceEEEecchhhcCcccHHHHH
Confidence 3679999999999999876554
No 108
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.74 E-value=1.4e-20 Score=197.34 Aligned_cols=131 Identities=10% Similarity=0.105 Sum_probs=98.3
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCC--
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGN-- 562 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~-- 562 (703)
+++.+|+|+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|+.++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 467899999999999999999999999774 2 0 1 55677779999999999999998762100
Q ss_pred CCHHHHHHHHHHhcHHHHHHHhhccccch------hcCCCCCCChhHHHHHHHH--HHhccCCCEEEeeccCcCCCHHH
Q 005314 563 ATEAEVLAAAELANAHQFISSLKQGYDTI------VGERGIQLSGGQKQRVAIA--RAMVKAPKILLLDEATSALDAES 633 (703)
Q Consensus 563 ~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~------vGe~G~~LSGGQkQRiaIA--RAllk~p~ILlLDEaTSaLD~~s 633 (703)
......-++.+.+.+.+++..|++|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00000112233456788999999998875 4567899999999999998 666 899999999999999864
No 109
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.74 E-value=6.7e-20 Score=182.11 Aligned_cols=168 Identities=18% Similarity=0.249 Sum_probs=106.5
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC-----CCCCCeEEE-------CCeeCC
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFY-----DPDTGHITL-------DGVEIQ 526 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y-----~p~~G~I~i-------dG~di~ 526 (703)
|+++|++|.|+ .+++++ |++++|.+++|+|++|||||||++.|.|.. .|+.|++.+ ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999998 899998765 233332
Q ss_pred C---C--------CHHHHhcceEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccc-hhc
Q 005314 527 K---L--------QLKWLRQQMGLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDT-IVG 593 (703)
Q Consensus 527 ~---~--------~~~~lR~~i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vG 593 (703)
+ + ..+.+++.++++.|+...+++ ++..|+..+ . ...++++.+.+ .. .+... .|+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~-~~~~~~~~~~~---------~~--~~~~~~~v~ 144 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP-L-KDLDQQMIEWA---------VD--SNIAVLVLL 144 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-C-CHHHHHHHHHH---------HH--TTCCEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC-C-chhHHHHHHHH---------HH--cCCCeEEEE
Confidence 2 1 123456666666665444433 333344333 1 11112233222 11 12322 235
Q ss_pred CCCCCCChhHHHH-HHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHc
Q 005314 594 ERGIQLSGGQKQR-VAIARAMVKAPKILLLDEATSALDAESERVIQDALERVM 645 (703)
Q Consensus 594 e~G~~LSGGQkQR-iaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~ 645 (703)
.+--.+|+||||| +..||+++++|+++++||||||+|.+....+.+.|.+..
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 5556799999999 899999999999999999999999999999999997754
No 110
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.74 E-value=1.2e-19 Score=185.19 Aligned_cols=182 Identities=14% Similarity=0.108 Sum_probs=111.7
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHc--CCCCCCCCeEEECCeeCCCCCHHHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ--RFYDPDTGHITLDGVEIQKLQLKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~--g~y~p~~G~I~idG~di~~~~~~~lR~ 535 (703)
.++++.+++.|+.- | .+|.+ .|++|++++|+||||||||||+++|+ ++..+.+|.+.+++.+... .....++
T Consensus 6 ~~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (251)
T 2ehv_A 6 YQPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMA 79 (251)
T ss_dssp --CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHH
T ss_pred ccccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHH
Confidence 35566777766532 1 23443 79999999999999999999999999 7767888888888754321 2234456
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 536 QMGLVSQEPVLFN-DTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 536 ~i~~V~Qe~~LF~-gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
.+++++|++..+. -++.++.... .. ....+..... ...+-++.++...+..-.
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~ 133 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGVSSV-VG-LPSEEKFVLE------------------------DRFNVDNFLRYIYRVVKA 133 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC---------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred HcCCChHHHhhcCCEEEEEccccc-cc-cccccceecc------------------------CcccHHHHHHHHHHHHHh
Confidence 7888888753322 1333332221 00 0000000000 011233444443444345
Q ss_pred cCCCEEEeeccCcCCC-----HHHHHHHHHHHHHHc-CCceEEEEccCchHH----------hhc-CEEEEEeC
Q 005314 615 KAPKILLLDEATSALD-----AESERVIQDALERVM-VGRTTVVIAHRLSTI----------RDA-DLIAVVKN 671 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD-----~~se~~v~~~l~~~~-~~rT~IvIaHrlsti----------~~a-D~I~vl~~ 671 (703)
.+|++++|||||+.|| ....+.+.+.+..+. .|+|+|++||.+..+ ..| |+|++|++
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 7999999999999997 556666777776653 489999999999886 457 99999953
No 111
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.73 E-value=9.3e-18 Score=199.97 Aligned_cols=167 Identities=17% Similarity=0.121 Sum_probs=120.6
Q ss_pred CcEEEEEEEEEcCCC--CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhH--------cCCCCCCCCeEEECCeeCC
Q 005314 457 GDIEFQHITFKYPAR--PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLL--------QRFYDPDTGHITLDGVEIQ 526 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~--~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL--------~g~y~p~~G~I~idG~di~ 526 (703)
+.|++++...-+-.. .+..|++|++|++++|++++|+|||||||||+++++ .|.|-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458887754333211 135799999999999999999999999999999999 77776665432
Q ss_pred CCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 527 KLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 527 ~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
++++. .+|. .+| +.+.+ ...+|+|++++
T Consensus 702 ----------~~~~d---~i~~-------~ig------------------~~d~l--------------~~~lStf~~e~ 729 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG------------------AGDSQ--------------LKGVSTFMAEM 729 (934)
T ss_dssp ----------EECCS---EEEE-------ECC-----------------------------------------CHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC------------------chhhH--------------HHhHhhhHHHH
Confidence 11110 0111 111 00100 13478888888
Q ss_pred HHHHHHh--ccCCCEEEeeccCcCCCHHHHHHH-HHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCEEEEecChh
Q 005314 607 VAIARAM--VKAPKILLLDEATSALDAESERVI-QDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHE 681 (703)
Q Consensus 607 iaIARAl--lk~p~ILlLDEaTSaLD~~se~~v-~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~ 681 (703)
..+|+++ +.+|+++||||||+++|+.....+ +..++.+. .++|+|++||.......||++..++||++...|+.+
T Consensus 730 ~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 730 LETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEE 809 (934)
T ss_dssp HHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETT
T ss_pred HHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCC
Confidence 8888888 999999999999999999987777 44444443 389999999999988999999999999999877766
Q ss_pred HH
Q 005314 682 TL 683 (703)
Q Consensus 682 eL 683 (703)
++
T Consensus 810 ~l 811 (934)
T 3thx_A 810 TL 811 (934)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.73 E-value=7.8e-19 Score=189.00 Aligned_cols=147 Identities=23% Similarity=0.271 Sum_probs=110.8
Q ss_pred EEEEEEcCCCCCcccccceeE-------EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCC-CCeEEECCeeCCCCCHHHH
Q 005314 462 QHITFKYPARPDVQIFRDLCL-------AIPSGKMVALVGESGSGKSTVISLLQRFYDPD-TGHITLDGVEIQKLQLKWL 533 (703)
Q Consensus 462 ~~vsF~Y~~~~~~~vL~~isl-------~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~-~G~I~idG~di~~~~~~~l 533 (703)
.+++|+|... ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5788888643 4567888877 78899999999999999999999999999998 56665544333 232 3
Q ss_pred hcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh
Q 005314 534 RQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM 613 (703)
Q Consensus 534 R~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl 613 (703)
+...++++|.+.... ..+-.+ +|||||
T Consensus 167 ~~~~~~v~q~~~~~~-------------~~~~~~----------------------------------------~La~aL 193 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD-------------TLGFSE----------------------------------------ALRSAL 193 (356)
T ss_dssp CCSSSEEEEEEBTTT-------------BSCHHH----------------------------------------HHHHHT
T ss_pred hccccceeeeeeccc-------------cCCHHH----------------------------------------HHHHHh
Confidence 445567777543211 111111 999999
Q ss_pred ccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q 005314 614 VKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNG 672 (703)
Q Consensus 614 lk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G 672 (703)
..+|++++||||| |.++...+.++ ...|+|+|+++|..+.+..+||+++|..|
T Consensus 194 ~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999999 77776555554 34599999999999999999999988543
No 113
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.72 E-value=3.2e-18 Score=180.54 Aligned_cols=148 Identities=24% Similarity=0.267 Sum_probs=103.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC----HHHH--hcceEEEccCCCCCcc-cHHHHHhc
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPVLFND-TVRVNIAY 557 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qe~~LF~g-TIreNI~~ 557 (703)
.+|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..| |.++++|+|++.++.. |+++|+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999987654 2333 5679999999987754 88899865
Q ss_pred CCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcC---CCCCCChhHHHHHHHHHHhccCCC--EEEeeccCcCCCHH
Q 005314 558 GKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGE---RGIQLSGGQKQRVAIARAMVKAPK--ILLLDEATSALDAE 632 (703)
Q Consensus 558 g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe---~G~~LSGGQkQRiaIARAllk~p~--ILlLDEaTSaLD~~ 632 (703)
+.. .+.+.. =+|| .|- ....++..++||.+||||+..+|+ +|.|| |+++.|
T Consensus 180 ~~~--------------~~~d~~------llDt-~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~-- 235 (304)
T 1rj9_A 180 MKA--------------RGYDLL------FVDT-AGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN-- 235 (304)
T ss_dssp HHH--------------HTCSEE------EECC-CCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH--
T ss_pred HHh--------------CCCCEE------EecC-CCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH--
Confidence 410 000000 0122 111 112246677999999999999999 45555 444443
Q ss_pred HHHHHHHHHHHHc--CCceEEEEccCchHH
Q 005314 633 SERVIQDALERVM--VGRTTVVIAHRLSTI 660 (703)
Q Consensus 633 se~~v~~~l~~~~--~~rT~IvIaHrlsti 660 (703)
+.+.+.+.. .+.|+|+|||...+.
T Consensus 236 ----~~~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 236 ----GLEQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp ----HHHHHHHHHHHHCCSEEEEECTTSSC
T ss_pred ----HHHHHHHHHHHcCCcEEEEECCcccc
Confidence 333333321 278999999986553
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=3.4e-19 Score=195.44 Aligned_cols=166 Identities=15% Similarity=0.141 Sum_probs=101.9
Q ss_pred CcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcc
Q 005314 457 GDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQ 536 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~ 536 (703)
+.|+++||+++|+. ..+++|+||+| +|||+||||||||++.|+|...|..| .+|.++... ....++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 46899999999963 46999999998 99999999999999999999886665 234333211 1112467
Q ss_pred eEEEccCCCCC-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhcc
Q 005314 537 MGLVSQEPVLF-NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVK 615 (703)
Q Consensus 537 i~~V~Qe~~LF-~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk 615 (703)
+++++|++.++ ..||.||+.++.. .+.++.++. +.++|.. +++.+.+||++||||+++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~--~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA--VDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp EECC------CEEEEEEECC-------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh--ccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhcc
Confidence 99999998876 6799999999832 222222222 2233332 234456789999999999
Q ss_pred CCC---EEEeeccC-cCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH
Q 005314 616 APK---ILLLDEAT-SALDAESERVIQDALERVMVGRTTVVIAHRLSTI 660 (703)
Q Consensus 616 ~p~---ILlLDEaT-SaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti 660 (703)
+|+ +|++|||| ++||+... .+++. +..+.++|+|.|+..++
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~-~~lk~---L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI-EFMKR---LHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH-HHHHH---HTTTSEEEEEEESTTSS
T ss_pred CCCeeEEEEEecCcccCCCHHHH-HHHHH---HhccCcEEEEEEcccCc
Confidence 999 99999999 69998763 33333 34578899998887654
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.71 E-value=1.9e-17 Score=159.99 Aligned_cols=79 Identities=28% Similarity=0.351 Sum_probs=71.9
Q ss_pred CCCCChhHHHHHHHHHHhc----cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEE--
Q 005314 596 GIQLSGGQKQRVAIARAMV----KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVV-- 669 (703)
Q Consensus 596 G~~LSGGQkQRiaIARAll----k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl-- 669 (703)
..+||||||||++||||++ ++|+++||||||++||+.+++.+.+.|.++.++.++|+|||+..++..||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999995 6689999999999999999999999999988889999999999999999999865
Q ss_pred eCCEE
Q 005314 670 KNGVI 674 (703)
Q Consensus 670 ~~G~I 674 (703)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 57753
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=8.7e-19 Score=184.95 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=81.3
Q ss_pred EEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC-CCCCCCeEEECCeeCCCCCHHHHhcceEEE
Q 005314 462 QHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF-YDPDTGHITLDGVEIQKLQLKWLRQQMGLV 540 (703)
Q Consensus 462 ~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~-y~p~~G~I~idG~di~~~~~~~lR~~i~~V 540 (703)
+||+++|. ...++++++|+| +|||+||+|||||++.|.|. ..|.+| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 47888896 346999999998 99999999999999999998 889999 9999988754 21 1 4679999
Q ss_pred ccCCCCC-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCE
Q 005314 541 SQEPVLF-NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKI 619 (703)
Q Consensus 541 ~Qe~~LF-~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~I 619 (703)
+|++.++ .-||.||..+|...+ ..++.... .+++.. -++.. -.++|||||||+++|||+. +
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~-~~e~~~~l------~~~l~~---~~~~~----~~~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAIN-CRDCFKTI------ISYIDE---QFERY----LHDESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTTH------HHHHHH---HHHHH----HHHHTSSCCTTCCCCCCCE----E
T ss_pred ecCCCcccCcchhhhhhhhhhcC-cHHHHHHH------HHHHHH---HHHHH----HHHhCHHhhhhhhhhhhhh----e
Confidence 9987654 569999998873211 11111111 111211 12222 2458999999999999986 9
Q ss_pred EEeeccCcC-CCHHHHHHHHHHHHHHcC--CceEEEEccCchH
Q 005314 620 LLLDEATSA-LDAESERVIQDALERVMV--GRTTVVIAHRLST 659 (703)
Q Consensus 620 LlLDEaTSa-LD~~se~~v~~~l~~~~~--~rT~IvIaHrlst 659 (703)
|++||||++ ||+... +.++++.+ +.++|+..|++.+
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999999986 999874 33333332 5677777899854
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.67 E-value=8.7e-20 Score=182.13 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=97.0
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNA 563 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~ 563 (703)
.++|++++|+||||||||||+++|.|+++|. | ..+++|+||.+.+..+.++|+......+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5799999999999999999999999999987 5 36899999999999888888742211111
Q ss_pred CHHHHHHHHHHhcHHHHHHHhhcc--ccchhcCCCCCCChhHHHHHHHH-HHhccCCCEEEeeccC
Q 005314 564 TEAEVLAAAELANAHQFISSLKQG--YDTIVGERGIQLSGGQKQRVAIA-RAMVKAPKILLLDEAT 626 (703)
Q Consensus 564 t~~ei~~A~~~a~l~~~I~~Lp~G--~dT~vGe~G~~LSGGQkQRiaIA-RAllk~p~ILlLDEaT 626 (703)
..+.....+.+++..|+.| ++++++++|..+||||+||+++| |+++.++.++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 1122233456678888887 88899999999999999999999 9999999999999984
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.64 E-value=6.2e-17 Score=162.89 Aligned_cols=165 Identities=18% Similarity=0.131 Sum_probs=115.0
Q ss_pred cccccceeE-EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhc---ceEEEccCCCCCcc
Q 005314 474 VQIFRDLCL-AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ---QMGLVSQEPVLFND 549 (703)
Q Consensus 474 ~~vL~~isl-~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~---~i~~V~Qe~~LF~g 549 (703)
.+.|+++.. .+++|+.++|+||||||||||++.|++...+.+|.|.+.+.+. +.+.+++ .+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 467899988 8999999999999999999999999999888889998876544 2333322 34444433211
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC--EEEeeccCc
Q 005314 550 TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK--ILLLDEATS 627 (703)
Q Consensus 550 TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~--ILlLDEaTS 627 (703)
+++.+- . .... . .. + .+ + . ...|.+|.++.+.+.+...+|+ ++|+||||+
T Consensus 83 ---~~~~~~-~-~~~~-~-------------~~--~-~~---~-~--~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 83 ---KKLIII-D-ALMK-E-------------KE--D-QW---S-L--VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp ---TTEEEE-E-CCC--------------------C-TT---B-C--SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ---CCEEEE-e-cccc-c-------------cC--c-ee---e-e--cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 112111 0 0100 0 00 0 00 1 1 1348999999888888778999 999999999
Q ss_pred CC--CHHHHHHHHHHHHHHc--CCceEEEEccCc--------hHH-hhcCEEEEEeCC
Q 005314 628 AL--DAESERVIQDALERVM--VGRTTVVIAHRL--------STI-RDADLIAVVKNG 672 (703)
Q Consensus 628 aL--D~~se~~v~~~l~~~~--~~rT~IvIaHrl--------sti-~~aD~I~vl~~G 672 (703)
.+ |+...+.+.+.|.++. .+.|+|+++|.. ..+ ..||+|++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9988888888887763 478999999998 335 459999999864
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.64 E-value=1.1e-17 Score=168.18 Aligned_cols=142 Identities=11% Similarity=0.120 Sum_probs=106.5
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCC--CCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcc-cH----HHHH
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDP--DTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TV----RVNI 555 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~g-TI----reNI 555 (703)
..++|+.++|+||||||||||+++|+|+++| ..|.|.+++.+.+. ..++.++|++|++.+|.. |+ .||+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 5789999999999999999999999999986 78999999977653 246789999999988876 33 4666
Q ss_pred hcCCCC-CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHH
Q 005314 556 AYGKEG-NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESE 634 (703)
Q Consensus 556 ~~g~~~-~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se 634 (703)
.+.... ..+.++ ++.++..++++||| ||+++.
T Consensus 88 ~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 88 EVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHHHH
Confidence 543110 011222 23334447999999 999999
Q ss_pred HHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCEEEEecChhHHhcc
Q 005314 635 RVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKNGVIAEKGKHETLVHV 686 (703)
Q Consensus 635 ~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 686 (703)
+.+.+.+. +++|+++++|++..+.. |+ +++| .|+.+++.++
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 99998875 57899999999998876 43 6667 6777777643
No 120
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.62 E-value=7.1e-18 Score=179.45 Aligned_cols=143 Identities=16% Similarity=0.186 Sum_probs=111.0
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCC--------CCCCCeEEECCeeCCCCC---------------HHHHhcceEEE---c
Q 005314 488 KMVALVGESGSGKSTVISLLQRFY--------DPDTGHITLDGVEIQKLQ---------------LKWLRQQMGLV---S 541 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y--------~p~~G~I~idG~di~~~~---------------~~~lR~~i~~V---~ 541 (703)
+.++|+|+||||||||++.|+|++ .|+.|+|.|||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 889999999999998763 35678889988 7
Q ss_pred cCCC-CCcccHHHHHhcCCCCCCCHHHHHHHH----------------HHhcHHHHHHHhhccccchhcCCCCCCChhHH
Q 005314 542 QEPV-LFNDTVRVNIAYGKEGNATEAEVLAAA----------------ELANAHQFISSLKQGYDTIVGERGIQLSGGQK 604 (703)
Q Consensus 542 Qe~~-LF~gTIreNI~~g~~~~~t~~ei~~A~----------------~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQk 604 (703)
|++. .|+.++.||+.++ .+ ..+.+.. ..+++.++...++ +|||||+
T Consensus 85 q~~~~~~~~~v~E~~~l~-~p----~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------------~ls~g~~ 147 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMA-DP----GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------------QFTIAQS 147 (318)
T ss_dssp HHTSCCCSEEEEEEETTC-CH----HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------------HCHHHHH
T ss_pred hcCCCCCCEEEEeCCCCC-CH----HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------------hchHHHH
Confidence 8876 4789999999887 22 2232221 1112222222221 5899999
Q ss_pred HHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q 005314 605 QRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLS 658 (703)
Q Consensus 605 QRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrls 658 (703)
||+..+|+++.+|+++ ||| +.+.+.|.++.++.|+++++|+.-
T Consensus 148 Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 148 QVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp HHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred HHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 9999999999999987 888 677788877777899999999743
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.61 E-value=5.2e-18 Score=166.22 Aligned_cols=161 Identities=14% Similarity=0.066 Sum_probs=102.2
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGN 562 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~ 562 (703)
.+++|+.++|+|+|||||||++++|++. |..|.|.+||.++.... .-++.++|++|++. .+.|+++|+.+. .
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~-~-- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADV-A-- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHH-H--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHH-H--
Confidence 4789999999999999999999999998 78999999997764321 11345788888765 567888998653 1
Q ss_pred CCHHHHHHHHHHhcHHHHHHHhh--ccccch--hcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHH
Q 005314 563 ATEAEVLAAAELANAHQFISSLK--QGYDTI--VGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQ 638 (703)
Q Consensus 563 ~t~~ei~~A~~~a~l~~~I~~Lp--~G~dT~--vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~ 638 (703)
... .+ .+-...++.+. .+++.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.
T Consensus 77 ----~~~--~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 77 ----GRY--AK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp ----HHH--HH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred ----HHH--hc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 000 00 00000000000 011110 12334579999999999999999999986 5777777777
Q ss_pred HHHHHHcCCceEEEEccCchHHhhcCEE
Q 005314 639 DALERVMVGRTTVVIAHRLSTIRDADLI 666 (703)
Q Consensus 639 ~~l~~~~~~rT~IvIaHrlsti~~aD~I 666 (703)
+.+..+....++++.|+..+.-..+|+|
T Consensus 142 ~~~~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp HHTTCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred HHHhccCcccccEEECCCCCHHHHHHHH
Confidence 7665443222444555544433334444
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.61 E-value=6.4e-16 Score=154.39 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=98.3
Q ss_pred cccccceeE-EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHH
Q 005314 474 VQIFRDLCL-AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVR 552 (703)
Q Consensus 474 ~~vL~~isl-~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIr 552 (703)
.+.|+++.. -+++|+.++|+|++|||||||++.+++ .+..+.+.++..+ .++.+. ++
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~------------------~~ 63 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPER------------------LV 63 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHH------------------HH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHH------------------HH
Confidence 346777765 799999999999999999999999998 3333444443321 112222 22
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChh--HHHHHHHHHHhccC-CCEEEeeccCcCC
Q 005314 553 VNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGG--QKQRVAIARAMVKA-PKILLLDEATSAL 629 (703)
Q Consensus 553 eNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG--QkQRiaIARAllk~-p~ILlLDEaTSaL 629 (703)
+..... ..+.++ +.+.+. + ..++++ |+|+++.+|+++++ |+++|+||||+.+
T Consensus 64 ~~~~~~---~~~~~~------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 64 QMAETR---GLNPEE------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHTT---TCCHHH------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHhc---CCChHH------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 211110 111221 111110 1 123344 47899999999986 9999999999999
Q ss_pred CHHHH--------HHHHHHHHHHcC--CceEEEEccCch-------------HH-hhcCEEEEEeCC
Q 005314 630 DAESE--------RVIQDALERVMV--GRTTVVIAHRLS-------------TI-RDADLIAVVKNG 672 (703)
Q Consensus 630 D~~se--------~~v~~~l~~~~~--~rT~IvIaHrls-------------ti-~~aD~I~vl~~G 672 (703)
|...+ ..+.+.|.++.+ +.|+|+++|... .+ ..||.|++|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 97543 334555665543 889999999865 33 469999999764
No 123
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.60 E-value=7.7e-16 Score=182.99 Aligned_cols=158 Identities=17% Similarity=0.168 Sum_probs=103.4
Q ss_pred CcEEEEEEEEEcCC------CCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH
Q 005314 457 GDIEFQHITFKYPA------RPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL 530 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~------~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~ 530 (703)
+.|++++. ++|- ..+..|++|++|++++|++++|+|||||||||+++++.+..-
T Consensus 639 ~~i~i~~~--rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~------------------ 698 (918)
T 3thx_B 639 RKIVIKNG--RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI------------------ 698 (918)
T ss_dssp CEEEEEEE--CCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEec--cchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH------------------
Confidence 35777664 3331 114679999999999999999999999999999999864210
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 531 KWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 531 ~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
+.+.-.+||++..-+ ++.++| |. ..++.+.+. .+-..+|+|++|+..|+
T Consensus 699 --~aq~g~~vpa~~~~i--~~~d~i-~~---------------~ig~~d~l~-----------~~~stfs~em~~~~~il 747 (918)
T 3thx_B 699 --MAQIGSYVPAEEATI--GIVDGI-FT---------------RMGAADNIY-----------KGRSTFMEELTDTAEII 747 (918)
T ss_dssp --HHHHTCCBSSSEEEE--ECCSEE-EE---------------EC---------------------CCHHHHHHHHHHHH
T ss_pred --HhhcCccccchhhhh--hHHHHH-HH---------------hCChHHHHH-----------HhHHHhhHHHHHHHHHH
Confidence 001111233322100 000011 00 001111111 12256899999999999
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHHH-HHHHHHc--CCceEEEEccCchHHhhcCEE
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVIQ-DALERVM--VGRTTVVIAHRLSTIRDADLI 666 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v~-~~l~~~~--~~rT~IvIaHrlsti~~aD~I 666 (703)
|+ +.+|+++||||||++||+.....+. ..++.+. .++|+|++||.+.....||+.
T Consensus 748 ~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 748 RK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp HH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred Hh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 99 8999999999999999999888876 4444442 489999999999887777654
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.7e-16 Score=173.22 Aligned_cols=179 Identities=13% Similarity=0.156 Sum_probs=116.2
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCE--EEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhc
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKM--VALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQ 535 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~--vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~ 535 (703)
.+++++ ++.|++ .+ |+++||+|++|++ +||||+||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 455666 788863 35 9999999999999 9999999999999999999994 5666665554455677
Q ss_pred ceEEEccCCCCC-cccHHHHHhcCCCCCCCHHHHHH----HHHHhcHHHHHHHh-------hccccch----h---cCCC
Q 005314 536 QMGLVSQEPVLF-NDTVRVNIAYGKEGNATEAEVLA----AAELANAHQFISSL-------KQGYDTI----V---GERG 596 (703)
Q Consensus 536 ~i~~V~Qe~~LF-~gTIreNI~~g~~~~~t~~ei~~----A~~~a~l~~~I~~L-------p~G~dT~----v---Ge~G 596 (703)
.+++++|++.++ .-|+.||+.||.. .+.+.-++ .++ ..+.+++... +..-|+. | -+.+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~--~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ--INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhhc--cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 899999999887 5699999999842 33322111 111 1223333332 1222332 1 3445
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHH-Hc-CCceEEEEcc
Q 005314 597 IQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALER-VM-VGRTTVVIAH 655 (703)
Q Consensus 597 ~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~-~~-~~rT~IvIaH 655 (703)
..|+-.+ +.|+|+|..+++|+++|++|..|.++--..+.+.+.+ +. .|.+++.|+.
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 5677666 8999999999999999999999998766677777765 43 4677887874
No 125
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.59 E-value=1.6e-15 Score=158.12 Aligned_cols=151 Identities=16% Similarity=0.170 Sum_probs=102.9
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHH-hcCCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNI-AYGKEG 561 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI-~~g~~~ 561 (703)
-+++|+.++|+||+|||||||+..+++... .|++. .|.+... +..+.|++.|..+ ..+.+++ .+| .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g-~- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALG-A- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHH-T-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHH-h-
Confidence 478999999999999999999999998654 57663 3544321 3468888776543 2343333 233 1
Q ss_pred CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCc--CCCHHHH---HH
Q 005314 562 NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATS--ALDAESE---RV 636 (703)
Q Consensus 562 ~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTS--aLD~~se---~~ 636 (703)
+....+..++++.. ++....+.....||+||+|++ |+++++|+++||||||+ ++|..+. ..
T Consensus 93 ~~~~~~~~~~~~~l-----------~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 HLSAEERQAVADGL-----------LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp TSCHHHHHHHHHHE-----------EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred hcChhhhhhccCce-----------EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 23333333332222 333444566788999998865 78899999999999999 9997554 67
Q ss_pred HHHHHHHHc--CCceEEEEccCchHH
Q 005314 637 IQDALERVM--VGRTTVVIAHRLSTI 660 (703)
Q Consensus 637 v~~~l~~~~--~~rT~IvIaHrlsti 660 (703)
+.+.|.++. .++|+|+|+|.....
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 778887764 389999999987654
No 126
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.58 E-value=2.9e-16 Score=185.02 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=109.3
Q ss_pred CcEEEEEEEEEcCCC----CCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-CCCeEEECCeeCCCCCHH
Q 005314 457 GDIEFQHITFKYPAR----PDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDP-DTGHITLDGVEIQKLQLK 531 (703)
Q Consensus 457 ~~I~~~~vsF~Y~~~----~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-~~G~I~idG~di~~~~~~ 531 (703)
+.|++++. ++|-- .+..+++|++|+ ++|++++|+|||||||||+++++.|+.-+ ..| ..+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 35777754 34421 135799999999 99999999999999999999999997432 222 11111
Q ss_pred HHhcceEEEccCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHH
Q 005314 532 WLRQQMGLVSQEPVLFND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIA 610 (703)
Q Consensus 532 ~lR~~i~~V~Qe~~LF~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIA 610 (703)
-+..+++++| +|.. ++.||+..+ . ..+|+|++ +++.+
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~-----------------------------~--------stf~~e~~-~~~~i 680 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG-----------------------------R--------STFMVEMT-ETANI 680 (800)
T ss_dssp -SEEEECCCCE---EEEEEC------------------------------------------------CHHHHH-HHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh-----------------------------h--------hhhhHHHH-HHHHH
Confidence 1245677666 4432 444544322 0 13566665 45555
Q ss_pred HHhccCCCEEEeeccCcCCCHHHHHHH-HHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCEEEE
Q 005314 611 RAMVKAPKILLLDEATSALDAESERVI-QDALERVM--VGRTTVVIAHRLSTIRDADLIAVVKNGVIAE 676 (703)
Q Consensus 611 RAllk~p~ILlLDEaTSaLD~~se~~v-~~~l~~~~--~~rT~IvIaHrlsti~~aD~I~vl~~G~Ive 676 (703)
...+.+|+++||||||+++|+.....+ .+.++.+. .++|+|++||.......||++..++||++..
T Consensus 681 l~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 681 LHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 556899999999999888887655444 45555543 3899999999999888899887777777653
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.53 E-value=8.6e-15 Score=148.47 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=95.5
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcC--CCCC-----CCCeEEECCeeCC-CCCHHHHhcceEEEccCCCCCcccHHHH
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQR--FYDP-----DTGHITLDGVEIQ-KLQLKWLRQQMGLVSQEPVLFNDTVRVN 554 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g--~y~p-----~~G~I~idG~di~-~~~~~~lR~~i~~V~Qe~~LF~gTIreN 554 (703)
-|++|+.++|+||+|||||||++.|++ ...| ..|.+.+++.+.- .-....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 5555 6788999987631 11234455667777664 5678
Q ss_pred HhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHH--
Q 005314 555 IAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAE-- 632 (703)
Q Consensus 555 I~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~-- 632 (703)
+.+... .+.++..+.++. +.+.+. -.+|+++++||+|+.+|++
T Consensus 93 ~~~~~~--~~~~~~~~~~~~--~~~~~~-------------------------------~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARA--FNTDHQTQLLYQ--ASAMMV-------------------------------ESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEEC--CSHHHHHHHHHH--HHHHHH-------------------------------HSCEEEEEEETSSGGGC----
T ss_pred eEEEec--CCHHHHHHHHHH--HHHHHh-------------------------------cCCceEEEEeCchHHHHHHhc
Confidence 766522 333343332211 111111 1689999999999999986
Q ss_pred -----HHH-----HHHHHHHHHc--CCceEEEEccCchHHh--------------------hcCEEEEEeCC
Q 005314 633 -----SER-----VIQDALERVM--VGRTTVVIAHRLSTIR--------------------DADLIAVVKNG 672 (703)
Q Consensus 633 -----se~-----~v~~~l~~~~--~~rT~IvIaHrlsti~--------------------~aD~I~vl~~G 672 (703)
+++ .+...|.++. .++|+|+++|-..... .||.|++|++|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 433 3444444433 2899999999654332 59999999865
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.52 E-value=1.2e-15 Score=168.70 Aligned_cols=149 Identities=20% Similarity=0.296 Sum_probs=105.3
Q ss_pred cceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC----HHH--HhcceEEEccCCCCC-ccc
Q 005314 478 RDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ----LKW--LRQQMGLVSQEPVLF-NDT 550 (703)
Q Consensus 478 ~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~----~~~--lR~~i~~V~Qe~~LF-~gT 550 (703)
+++||++++|++++|||+||||||||+++|+|++.|++|+|.++|.|+.... +.. .|++|+||+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5889999999999999999999999999999999999999999988875431 222 478899999998765 569
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCC-C-----CCCChhHHHHHHHHHHhcc-CC-CEEEe
Q 005314 551 VRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGER-G-----IQLSGGQKQRVAIARAMVK-AP-KILLL 622 (703)
Q Consensus 551 IreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~-G-----~~LSGGQkQRiaIARAllk-~p-~ILlL 622 (703)
+++||.++... |+|..+=+. | .+|-.--+||+.++|++.. +| .+||.
T Consensus 364 V~e~l~~a~~~-------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 364 IFDAIQAAKAR-------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHT-------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHhc-------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 99999886211 111111000 0 1111123588999998864 45 35666
Q ss_pred eccCcCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q 005314 623 DEATSALDAESERVIQDALERVMVGRTTVVIAH 655 (703)
Q Consensus 623 DEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaH 655 (703)
.+||++.|+... .+.+.+ ..+.|.|++||
T Consensus 419 LDattGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 419 IDASTGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp EEGGGTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred ecCcccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 668888665422 223332 23789999999
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.50 E-value=4.3e-17 Score=174.61 Aligned_cols=180 Identities=13% Similarity=0.147 Sum_probs=121.4
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC----HHHHh
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ----LKWLR 534 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~----~~~lR 534 (703)
|+++|+++.|. ...+|+++||++++|++++|+|++|||||||++.|.|++.|++|+|.+.|.|+.... ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 55667777774 246899999999999999999999999999999999999999999999999986543 23457
Q ss_pred cceEEEccCCCCCcc-------------cHHHHHhc---C-------CCCC--CCHHHHHHHHHH-------------hc
Q 005314 535 QQMGLVSQEPVLFND-------------TVRVNIAY---G-------KEGN--ATEAEVLAAAEL-------------AN 576 (703)
Q Consensus 535 ~~i~~V~Qe~~LF~g-------------TIreNI~~---g-------~~~~--~t~~ei~~A~~~-------------a~ 576 (703)
+++++|+|++.+|.. +++|.+.. + +.+. -++..+.+.++. ..
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 889999999999852 23333210 0 0000 011111110000 00
Q ss_pred HHHHHHHhhcccc-chhcC-CCCCCChhHHHHHHHHHHhcc------CCCEEEeeccCcCCCHHHHHHHHHHHHHHc
Q 005314 577 AHQFISSLKQGYD-TIVGE-RGIQLSGGQKQRVAIARAMVK------APKILLLDEATSALDAESERVIQDALERVM 645 (703)
Q Consensus 577 l~~~I~~Lp~G~d-T~vGe-~G~~LSGGQkQRiaIARAllk------~p~ILlLDEaTSaLD~~se~~v~~~l~~~~ 645 (703)
+...+..+|+-+- +.+.- ....+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0001122232110 11110 123579999999999999998 688887 99999999999999987653
No 130
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.47 E-value=2e-16 Score=177.94 Aligned_cols=175 Identities=15% Similarity=0.182 Sum_probs=124.5
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCc--ccH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN--DTV 551 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~--gTI 551 (703)
..+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.+. -+.+++++.|+.. .. .|+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeeccc-ccCCcCH
Confidence 45789999999999999999999999999999999999999999999987632222 1456888888766 33 377
Q ss_pred HHHHhcCC---C-----CCCCHHHHHHHHHHhc-------------HHHHHHHhhc---cccchhc-------CCCCCCC
Q 005314 552 RVNIAYGK---E-----GNATEAEVLAAAELAN-------------AHQFISSLKQ---GYDTIVG-------ERGIQLS 600 (703)
Q Consensus 552 reNI~~g~---~-----~~~t~~ei~~A~~~a~-------------l~~~I~~Lp~---G~dT~vG-------e~G~~LS 600 (703)
++++.... + .+..+.|...+++.++ +.+.+.+|.. |....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 77764331 1 1455556666665543 3455555532 3332222 1234579
Q ss_pred hhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-CceEEE--EccCchHHhh-cC
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-GRTTVV--IAHRLSTIRD-AD 664 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~rT~Iv--IaHrlsti~~-aD 664 (703)
||||||.++|. + | |++||+++.+.+.+.+.++.+ ++|+++ +||.++.+.. |+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999987752 1 7 999999988777777766543 678875 8999998753 54
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.45 E-value=2.6e-16 Score=149.97 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=73.5
Q ss_pred EEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEc
Q 005314 462 QHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVS 541 (703)
Q Consensus 462 ~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 541 (703)
+|++++|+ +..+++++||+|++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+|+
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 45566774 346899999999999999999999999999999999999 9999999999887521 1112 2799
Q ss_pred cCCCCCcccHHHHHh-cC
Q 005314 542 QEPVLFNDTVRVNIA-YG 558 (703)
Q Consensus 542 Qe~~LF~gTIreNI~-~g 558 (703)
|++.+|.-|+.||+. +|
T Consensus 82 q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 82 YHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEECTTCSCTTHHHHST
T ss_pred eccccccCCcHHHHHHcC
Confidence 999999889999995 45
No 132
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.44 E-value=1.9e-16 Score=154.97 Aligned_cols=165 Identities=15% Similarity=0.046 Sum_probs=107.2
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCC-cccHHHHHhcCCCCCCCH
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTVRVNIAYGKEGNATE 565 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF-~gTIreNI~~g~~~~~t~ 565 (703)
|+.++|+|||||||||++++|++ |.+|.|.+||.++... ..+++++|....+ ..|+++|+.+. .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-~----- 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL-T----- 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-H-----
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-H-----
Confidence 68899999999999999999987 7789999998665332 2467777765332 34777776442 0
Q ss_pred HHHHHHHHHhcHHHHHHHhhccccchhcC----CCCCC--ChhHHHHHHHHH------HhccCCCEEEeeccCcCCCHHH
Q 005314 566 AEVLAAAELANAHQFISSLKQGYDTIVGE----RGIQL--SGGQKQRVAIAR------AMVKAPKILLLDEATSALDAES 633 (703)
Q Consensus 566 ~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe----~G~~L--SGGQkQRiaIAR------Allk~p~ILlLDEaTSaLD~~s 633 (703)
....+ .+. +.=++...+. .-.++ |+|++||+.++. +++++|+...+|+ +||+..
T Consensus 67 ---~~~~~-~~~-------~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 67 ---VNFLL-AQN-------DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp ---HHHHH-TTC-------EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred ---HHHHh-cCC-------cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 00000 000 0001111010 00124 888889988888 8889998888884 799887
Q ss_pred HHHHHHHHHHHc-CCceEEEEccC-chHHhh-cCEEEEEeCCEEEEecChhHH
Q 005314 634 ERVIQDALERVM-VGRTTVVIAHR-LSTIRD-ADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 634 e~~v~~~l~~~~-~~rT~IvIaHr-lsti~~-aD~I~vl~~G~Ive~Gth~eL 683 (703)
.+. .+.+.... .+.|+|..+|. ++.+.. ||+|+ ++|+++..|+.+-|
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 777 77777654 35788888999 888755 99999 99999999987765
No 133
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.44 E-value=1.8e-16 Score=173.95 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=91.1
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC----CCHHHHhcceEEEc---------
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK----LQLKWLRQQMGLVS--------- 541 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~----~~~~~lR~~i~~V~--------- 541 (703)
.+|+++ + .++|+.++|+|||||||||++++|+|++.|++|+|.++|.++.. ++...+++++++++
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILR 234 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGG
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhc
Confidence 356666 4 38999999999999999999999999999999999999988742 11223455666655
Q ss_pred cCCCCC--c-----ccHHHHHhcCCCC-------CC-CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHH
Q 005314 542 QEPVLF--N-----DTVRVNIAYGKEG-------NA-TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQR 606 (703)
Q Consensus 542 Qe~~LF--~-----gTIreNI~~g~~~-------~~-t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQR 606 (703)
|+|.++ . .|+++|+.++... .+ +..+..+.+...++.++ . ...+|||||+||
T Consensus 235 q~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~-----------~--~~~~LSgg~~QR 301 (418)
T 1p9r_A 235 QDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF-----------L--ISSSLLGVLAQR 301 (418)
T ss_dssp GCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH-----------H--HHHHEEEEEEEE
T ss_pred cCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH-----------H--HHHHHHHHHHHH
Confidence 888763 2 3888888764111 11 11233333333333222 1 335799999999
Q ss_pred HHHHHHhccCCCEEE
Q 005314 607 VAIARAMVKAPKILL 621 (703)
Q Consensus 607 iaIARAllk~p~ILl 621 (703)
||||++.+|++..
T Consensus 302 --LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 --LVRTLCPDCKEPY 314 (418)
T ss_dssp --EEEEECTTTCEEE
T ss_pred --hhhhhcCCCCccC
Confidence 9999999999876
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.43 E-value=5.7e-15 Score=157.11 Aligned_cols=166 Identities=14% Similarity=0.082 Sum_probs=108.7
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH----HHHhcceE--EEccCCCCCc-ccHHHHH
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL----KWLRQQMG--LVSQEPVLFN-DTVRVNI 555 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~----~~lR~~i~--~V~Qe~~LF~-gTIreNI 555 (703)
..++|++++|||||||||||+++.|+|++.|++|+|.++|.|+..... ..++++++ +++|+..++. .|++|||
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999977663 33455544 9999988875 5899999
Q ss_pred hcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHH
Q 005314 556 AYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESER 635 (703)
Q Consensus 556 ~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~ 635 (703)
.++...+. +.+ =+||. |-.. .---=..+--.++|++..++++++||.+|. .|...
T Consensus 205 ~~~~~~~~---------------d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~-- 259 (328)
T 3e70_C 205 QHAKARGI---------------DVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE-- 259 (328)
T ss_dssp HHHHHHTC---------------SEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH--
T ss_pred HHHHhccc---------------hhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH--
Confidence 76510000 000 02221 1100 001112233348999999999999996665 33322
Q ss_pred HHHHHHHHHcCCceEEEEccCchH---------H-hhcCEEEEEeCCEEE
Q 005314 636 VIQDALERVMVGRTTVVIAHRLST---------I-RDADLIAVVKNGVIA 675 (703)
Q Consensus 636 ~v~~~l~~~~~~rT~IvIaHrlst---------i-~~aD~I~vl~~G~Iv 675 (703)
..+.+.+ ..+.|.|++||--.+ + ...-.|..+..|+-+
T Consensus 260 -~~~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 260 -QARQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp -HHHHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred -HHHHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 1222322 237899999994432 1 123467777777654
No 135
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=4.3e-14 Score=151.89 Aligned_cols=137 Identities=16% Similarity=0.235 Sum_probs=79.8
Q ss_pred EEEEEcCCCCChHHHHHhHcC-CCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCC-cccHHHHHhcCCCCCCCHH
Q 005314 489 MVALVGESGSGKSTVISLLQR-FYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTVRVNIAYGKEGNATEA 566 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g-~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF-~gTIreNI~~g~~~~~t~~ 566 (703)
.+.|+||+|+||||+++.|.| ++.|..|.|.++|.+...... -+..+++++|++++. +.+- .+ . .+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~-~--~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MG-N--NDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC------------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cC-C--cchH
Confidence 499999999999999999999 899999999999988764333 378899999988753 2110 11 1 1111
Q ss_pred HHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC
Q 005314 567 EVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMV 646 (703)
Q Consensus 567 ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~ 646 (703)
.+.+.++.+. .. .+++..+ +||| +..+|+++|||||++ ||.++...+.+.+++..+
T Consensus 108 ~~~~~i~~~~-----~~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 108 VIQELLKEVA-----QM--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp HHHHHHHHHT-----TT--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHH-----Hh--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC
Confidence 2333222210 00 0111111 5676 778999999999999 999999999999998777
Q ss_pred CceEEEEccCchH
Q 005314 647 GRTTVVIAHRLST 659 (703)
Q Consensus 647 ~rT~IvIaHrlst 659 (703)
+.++|++||+++.
T Consensus 164 ~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 164 NIRLIMVCDSMSP 176 (354)
T ss_dssp TEEEEEEESCSCS
T ss_pred CCEEEEEeCCHHH
Confidence 8899999999764
No 136
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=3.8e-14 Score=151.82 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=83.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-CCCCeEEEC-CeeCCCCCHHHHhcceEEEccCCCCCcc-cH
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYD-PDTGHITLD-GVEIQKLQLKWLRQQMGLVSQEPVLFND-TV 551 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-p~~G~I~id-G~di~~~~~~~lR~~i~~V~Qe~~LF~g-TI 551 (703)
.-++++++. .+|++++|+|+||||||||+++|+|+.. |..|+|.++ |.+.. ...++++++++|++.+++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357788875 4899999999999999999999999999 999999997 76642 2356789999999998866 99
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc
Q 005314 552 RVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV 614 (703)
Q Consensus 552 reNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll 614 (703)
+|+-.. ..+.+++.+. +.+++..+ |+.-...-.-.+|| ||+||+|||++++
T Consensus 279 ~e~~l~----~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGLW----HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCCC----CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhhc----CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 996322 3455554332 22333332 44444445567899 9999999999863
No 137
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.42 E-value=2.8e-13 Score=147.04 Aligned_cols=74 Identities=31% Similarity=0.402 Sum_probs=68.3
Q ss_pred CCCChhHHHHH------HHHHHhccC-CCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEE
Q 005314 597 IQLSGGQKQRV------AIARAMVKA-PKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVV 669 (703)
Q Consensus 597 ~~LSGGQkQRi------aIARAllk~-p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl 669 (703)
.+|||||+||+ |+|||+..+ |++|||||||++||+++...+.+.|.++.+++|+|+|||++.....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 58999999987 678999999 99999999999999999999999998876667999999999877789999999
Q ss_pred e
Q 005314 670 K 670 (703)
Q Consensus 670 ~ 670 (703)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 138
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.40 E-value=4.3e-15 Score=151.89 Aligned_cols=169 Identities=14% Similarity=0.157 Sum_probs=107.0
Q ss_pred CCCEEEEEcCCCCChHHHHHhHc---CCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCc-ccHHHHHhcCC--
Q 005314 486 SGKMVALVGESGSGKSTVISLLQ---RFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTVRVNIAYGK-- 559 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~---g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~-gTIreNI~~g~-- 559 (703)
++++++|+|+|||||||++++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.++. .|+.+|+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999886542 134556677788877654 58899986410
Q ss_pred ---------CCCCCHHHHHHHHHHhcHHHHHHHh---hc-cccchhcCCCCCCChhHHHHHHHHHHh-ccCCCEEEee--
Q 005314 560 ---------EGNATEAEVLAAAELANAHQFISSL---KQ-GYDTIVGERGIQLSGGQKQRVAIARAM-VKAPKILLLD-- 623 (703)
Q Consensus 560 ---------~~~~t~~ei~~A~~~a~l~~~I~~L---p~-G~dT~vGe~G~~LSGGQkQRiaIARAl-lk~p~ILlLD-- 623 (703)
....+.++.....+..... .+--| |+ .++-....+..+||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~-~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVD-LVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCC-EEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCC-EEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0011222221111100000 00000 00 011112233457898 66 899 9999999999
Q ss_pred --ccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q 005314 624 --EATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVKN 671 (703)
Q Consensus 624 --EaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~~ 671 (703)
|||++||..++..+.+.+.++.+....| +......+++++++.
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v-----~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDVAKPV-----IELYKSRGVLHQFSG 218 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHHHHHH-----HHHHHHTTCEEEEEC
T ss_pred cccccccCCCCcHHHHHHHHHHHHHhHHHH-----HHHHhhcCcEEEECC
Confidence 9999999999999999987764321100 122334566777764
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.37 E-value=5.4e-13 Score=145.53 Aligned_cols=147 Identities=20% Similarity=0.268 Sum_probs=98.7
Q ss_pred EeeCCCEEEEEcCCCCChHHHHH--hHcCCCCCCCC-----eEEECCeeC-CCCCHHHHhcceEEEccCCCCCcccHHHH
Q 005314 483 AIPSGKMVALVGESGSGKSTVIS--LLQRFYDPDTG-----HITLDGVEI-QKLQLKWLRQQMGLVSQEPVLFNDTVRVN 554 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~--lL~g~y~p~~G-----~I~idG~di-~~~~~~~lR~~i~~V~Qe~~LF~gTIreN 554 (703)
-|++|++++|+||||||||||+. ++.+..+|+.| .|++++.+. .......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 68999999999999999999999 44577766444 889998763 22234445667777665 67889
Q ss_pred HhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHh--ccCCCEEEeeccCcCCCHH
Q 005314 555 IAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAM--VKAPKILLLDEATSALDAE 632 (703)
Q Consensus 555 I~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAl--lk~p~ILlLDEaTSaLD~~ 632 (703)
|.+... .+.++..+.+ .-++++ -.+|+++++||+|+.+|.+
T Consensus 247 i~~~~~--~~~~~~~~~l-----------------------------------~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 247 VAYARA--YNADHQLRLL-----------------------------------DAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp EEEEEC--CSHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred EEEecc--CChHHHHHHH-----------------------------------HHHHHHHHhcCCceEEecchhhhCchh
Confidence 888732 2222222221 111111 1479999999999999976
Q ss_pred HH------------HHHHHHHHHHc--CCceEEEEccCch-------------------HH-hhcCEEEEEeCCE
Q 005314 633 SE------------RVIQDALERVM--VGRTTVVIAHRLS-------------------TI-RDADLIAVVKNGV 673 (703)
Q Consensus 633 se------------~~v~~~l~~~~--~~rT~IvIaHrls-------------------ti-~~aD~I~vl~~G~ 673 (703)
.. ..+.+.|.++. .+.|+|+|+|-.. .+ ..+|.+++|++|+
T Consensus 290 ~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 290 FSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 43 45666666654 3789999999832 22 3489999998763
No 140
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.32 E-value=3.2e-15 Score=151.33 Aligned_cols=188 Identities=15% Similarity=0.136 Sum_probs=84.0
Q ss_pred CcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHc-CCC------------CCCCCeEEECCeeCCCCCHHHHhcceEE
Q 005314 473 DVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ-RFY------------DPDTGHITLDGVEIQKLQLKWLRQQMGL 539 (703)
Q Consensus 473 ~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~-g~y------------~p~~G~I~idG~di~~~~~~~lR~~i~~ 539 (703)
+.+..+++||++++|++++|+||||||||||+++|+ |++ +|..|++ +|.++...+...+...
T Consensus 13 ~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~--- 87 (231)
T 3lnc_A 13 EAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL--- 87 (231)
T ss_dssp ---------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---
T ss_pred hhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---
Confidence 345789999999999999999999999999999999 999 7777765 6655554555544432
Q ss_pred EccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH-HHHH-HhccCC
Q 005314 540 VSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV-AIAR-AMVKAP 617 (703)
Q Consensus 540 V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi-aIAR-Allk~p 617 (703)
+.++..++.+++.+|+ ||.. . +++.++++. |....+.- -.+-...-+++. .-++ .++..|
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~~-~---~~i~~~~~~------------~~~vild~-~~~g~~~~~~~~~~~~~~v~v~~~ 149 (231)
T 3lnc_A 88 CSNGEIIEHAEVFGNF-YGVP-R---KNLEDNVDK------------GVSTLLVI-DWQGAFKFMEMMREHVVSIFIMPP 149 (231)
T ss_dssp HHTTCEEEEEEETTEE-EEEE-C---TTHHHHHHH------------TCEEEEEC-CHHHHHHHHHHSGGGEEEEEEECS
T ss_pred hhcCceehhhhhcccc-CCCC-H---HHHHHHHHc------------CCeEEEEc-CHHHHHHHHHhcCCCeEEEEEECC
Confidence 2344444455555554 4421 1 233333322 11111100 000000114444 2233 346788
Q ss_pred CEEEeeccCcCCCHHHHHHHHHHHHHHcC------CceEEEEccCchHH-hhcCEEEEEeCCEEEEecChhHH
Q 005314 618 KILLLDEATSALDAESERVIQDALERVMV------GRTTVVIAHRLSTI-RDADLIAVVKNGVIAEKGKHETL 683 (703)
Q Consensus 618 ~ILlLDEaTSaLD~~se~~v~~~l~~~~~------~rT~IvIaHrlsti-~~aD~I~vl~~G~Ive~Gth~eL 683 (703)
+..+|||.+++.|..++..+.+.|.+.+. ..+.|++.|.+..+ +..++++...+++...+++.+++
T Consensus 150 ~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~~ 222 (231)
T 3lnc_A 150 SMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTCRQVGLREL 222 (231)
T ss_dssp CHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHHH
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhhH
Confidence 88899999999999999888877754332 23555556655432 34455444444444434444333
No 141
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.31 E-value=1.1e-12 Score=123.58 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=69.9
Q ss_pred cccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC--eEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHH
Q 005314 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG--HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRV 553 (703)
Q Consensus 476 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G--~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIre 553 (703)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+.+++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999987 57 566655433211
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHH
Q 005314 554 NIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAES 633 (703)
Q Consensus 554 NI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~s 633 (703)
+++.+|++|+||||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 3467899999999998 55555
Q ss_pred HHHHHHHHHHHc-CCce-EEEEccCc
Q 005314 634 ERVIQDALERVM-VGRT-TVVIAHRL 657 (703)
Q Consensus 634 e~~v~~~l~~~~-~~rT-~IvIaHrl 657 (703)
+..+.+.+.... +++| +|+++|+.
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 777888887654 3677 77777753
No 142
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.30 E-value=1.7e-12 Score=125.88 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=76.4
Q ss_pred eEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCe-EEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCC
Q 005314 481 CLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGH-ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGK 559 (703)
Q Consensus 481 sl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~-I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~ 559 (703)
+|.+++|+.++|+||+|+|||||++.+++.+.|..|. +.+ -+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~----------------------------~~~-------- 75 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF----------------------------FDT-------- 75 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE----------------------------EEH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE----------------------------EEH--------
Confidence 5678899999999999999999999999998877763 211 011
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCc-CCCHHHHHHHH
Q 005314 560 EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATS-ALDAESERVIQ 638 (703)
Q Consensus 560 ~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTS-aLD~~se~~v~ 638 (703)
.++.+..+. ....+ ... -+...+.+|++||||||++ ++|+.....+.
T Consensus 76 ------~~~~~~~~~--------~~~~~--------~~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~ 123 (180)
T 3ec2_A 76 ------KDLIFRLKH--------LMDEG--------KDT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELIS 123 (180)
T ss_dssp ------HHHHHHHHH--------HHHHT--------CCS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred ------HHHHHHHHH--------HhcCc--------hHH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 111111110 00000 000 1122245999999999996 89999998888
Q ss_pred HHHHHHc-CCceEEEEccCchH
Q 005314 639 DALERVM-VGRTTVVIAHRLST 659 (703)
Q Consensus 639 ~~l~~~~-~~rT~IvIaHrlst 659 (703)
+.+.... +++|+|++||....
T Consensus 124 ~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 124 YIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHHHTTCEEEEECCCCSC
T ss_pred HHHHHHHHcCCCEEEEcCCChh
Confidence 8887654 68999999998753
No 143
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.29 E-value=6.1e-14 Score=140.95 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=108.7
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC---CCCCCeEEE--------CCeeCC-CCCHHHHhcceEEEccCC------CCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY---DPDTGHITL--------DGVEIQ-KLQLKWLRQQMGLVSQEP------VLF 547 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y---~p~~G~I~i--------dG~di~-~~~~~~lR~~i~~V~Qe~------~LF 547 (703)
.+.+++|+|++||||||++++|.+.| .++.|.|.. +|.++. +....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788999988 788876 356778999999999987 556
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhc-CCCCCCChhHHHHHHHHHHhccCCCEEEeeccC
Q 005314 548 NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVG-ERGIQLSGGQKQRVAIARAMVKAPKILLLDEAT 626 (703)
Q Consensus 548 ~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG-e~G~~LSGGQkQRiaIARAllk~p~ILlLDEaT 626 (703)
..++.+++. ++++..++..+..|+++.....++.+.+. ++|.-++|+ .++++++++++++|+.+++
T Consensus 84 ~~~v~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEIR--------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHHT--------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhhC--------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 677777762 46889999999999999999888888763 577888887 5778889999999998886
Q ss_pred c
Q 005314 627 S 627 (703)
Q Consensus 627 S 627 (703)
.
T Consensus 151 ~ 151 (227)
T 1cke_A 151 S 151 (227)
T ss_dssp H
T ss_pred H
Confidence 5
No 144
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.27 E-value=3.1e-13 Score=142.43 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=81.2
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE---CCeeCCCCCHHHHh-cceEEEccCCCCC------cccHH
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL---DGVEIQKLQLKWLR-QQMGLVSQEPVLF------NDTVR 552 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i---dG~di~~~~~~~lR-~~i~~V~Qe~~LF------~gTIr 552 (703)
.+.+|++++|+||||||||||+++|. +..|..|+|.+ +|+++..... .++ +.+|+|+|+|.+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9998876442 233 3799999999653 4578
Q ss_pred HHH--hcCC---------C---CCCCHHHHHHHHHHhcHHH-HHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 553 VNI--AYGK---------E---GNATEAEVLAAAELANAHQ-FISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 553 eNI--~~g~---------~---~~~t~~ei~~A~~~a~l~~-~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
||+ .|+. . .......+.+|++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 998 4430 0 1112356888888887754 433332 458998888899988
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.26 E-value=1.1e-14 Score=151.43 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=105.5
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCC-CCC-cccH
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEP-VLF-NDTV 551 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~-~LF-~gTI 551 (703)
..+++++++++++| ++|+||+|||||||+++|++.+.+ |.|.++|.++........++++++++|++ ..+ .-++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 35899999999999 999999999999999999999887 79999999987766667788899999986 333 3466
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCc----
Q 005314 552 RVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATS---- 627 (703)
Q Consensus 552 reNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTS---- 627 (703)
.|||-+... .....+. . ........+ -.+|||||+||..||+|+..+|++| |||+.
T Consensus 109 ~Deid~~~~-~r~~~~~-~-----~~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gR 168 (274)
T 2x8a_A 109 FDEVDALCP-RRSDRET-G-----ASVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGR 168 (274)
T ss_dssp EETCTTTCC----------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTS
T ss_pred eehhhhhhc-ccCCCcc-h-----HHHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCccc
Confidence 777765411 1111110 0 011111222 2368999999999999999999975 99975
Q ss_pred --------CCCHHHHHHHHHHH
Q 005314 628 --------ALDAESERVIQDAL 641 (703)
Q Consensus 628 --------aLD~~se~~v~~~l 641 (703)
.-|.+.+..|.+.+
T Consensus 169 fd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHHH
T ss_pred CCeEEEeCCcCHHHHHHHHHHH
Confidence 34677777777665
No 146
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.18 E-value=4.4e-12 Score=133.61 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=72.2
Q ss_pred EEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE---CCeeCCCCCHHHHhcceEEEccCCC-------------
Q 005314 482 LAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL---DGVEIQKLQLKWLRQQMGLVSQEPV------------- 545 (703)
Q Consensus 482 l~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i---dG~di~~~~~~~lR~~i~~V~Qe~~------------- 545 (703)
|++.+|++++|+||||||||||+++|.|+..|+.|+|.+ +|+++.........+++|+|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9999876552211247999999985
Q ss_pred ---CCc-ccHHHHHhcCCCC--CCCHHHHHHHHHHhcH-HHHHHHhhcc
Q 005314 546 ---LFN-DTVRVNIAYGKEG--NATEAEVLAAAELANA-HQFISSLKQG 587 (703)
Q Consensus 546 ---LF~-gTIreNI~~g~~~--~~t~~ei~~A~~~a~l-~~~I~~Lp~G 587 (703)
+|. -|+ +|+.|+... .....++.++++..++ .+...+.|.-
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ 291 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKM 291 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHH
Confidence 343 378 999986321 1224578999999999 4777776653
No 147
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.18 E-value=2.2e-12 Score=132.42 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=90.5
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHc---CCCCCCCCeEE--------ECCeeC-CCCCHHHHhcceEEEc
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ---RFYDPDTGHIT--------LDGVEI-QKLQLKWLRQQMGLVS 541 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~---g~y~p~~G~I~--------idG~di-~~~~~~~lR~~i~~V~ 541 (703)
..++++.+ ++|++|+|+|+|||||||++++|+ |++.|+.|.|. .+|.++ .......+++++++++
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 34555544 899999999999999999999999 99999999999 999998 4567889999999999
Q ss_pred cC------CCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCC
Q 005314 542 QE------PVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGI 597 (703)
Q Consensus 542 Qe------~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 597 (703)
|+ .+++..++.+||. .+++..++..+..++.+......+...++.+|.
T Consensus 94 ~~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~ 147 (252)
T 4e22_A 94 VSQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREALLRRQRAFREAPG 147 (252)
T ss_dssp EEETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSC
T ss_pred ecCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCC
Confidence 64 5577788888874 247777888888888898888888877776553
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.17 E-value=1e-11 Score=122.51 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=88.8
Q ss_pred eEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcc-cHHHHHhcCC
Q 005314 481 CLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TVRVNIAYGK 559 (703)
Q Consensus 481 sl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~g-TIreNI~~g~ 559 (703)
|+++++|++++|+||||||||||+++|.|++ | .+.++|.++........+..++|++|++.+|.. +..+|+.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 5788999999999999999999999999997 4 688999888776655668889999999988765 4444443220
Q ss_pred C-----CCCCHHHHHHHHHHh----------cHHHHHHHhhccc------------cchhcCCCCCCChhHHHHHHHHHH
Q 005314 560 E-----GNATEAEVLAAAELA----------NAHQFISSLKQGY------------DTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 560 ~-----~~~t~~ei~~A~~~a----------~l~~~I~~Lp~G~------------dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
. .....+++.++++.. ++..+....|+.+ ...+-++|..-....++|++-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0 012234454444331 2333333334331 112335665555667788888776
Q ss_pred hc---cCCCEEEeec
Q 005314 613 MV---KAPKILLLDE 624 (703)
Q Consensus 613 ll---k~p~ILlLDE 624 (703)
.. +.++++|.++
T Consensus 157 ~~~~~~~~d~vi~n~ 171 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND 171 (205)
T ss_dssp HHTTGGGCSEEEECS
T ss_pred HHhcccCCCEEEECC
Confidence 54 3467777654
No 149
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.13 E-value=4e-12 Score=139.19 Aligned_cols=153 Identities=19% Similarity=0.161 Sum_probs=94.0
Q ss_pred ccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHh
Q 005314 477 FRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIA 556 (703)
Q Consensus 477 L~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~ 556 (703)
-++++|++++|+.++|||++|||||||++.|.+... .+.+.+...+ ..++++|.|+. -..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~-~~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSE-EERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSS-SCEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecC-cceEEEEeccc
Confidence 479999999999999999999999999999999842 3455554433 34677777764 11223333332
Q ss_pred cCCC----CCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHH
Q 005314 557 YGKE----GNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAE 632 (703)
Q Consensus 557 ~g~~----~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~ 632 (703)
+... ...... ..+..+.+ +..+.- +|-. .+.-.+||+||+||+++||+|..+|.||+| +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era--~~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIART--RVLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSS--SEEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHH--HhhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2100 001111 11111111 000100 1111 122346999999999999999999999999 899987
Q ss_pred HHHHHHHHHHHHc--CCceEEEEc
Q 005314 633 SERVIQDALERVM--VGRTTVVIA 654 (703)
Q Consensus 633 se~~v~~~l~~~~--~~rT~IvIa 654 (703)
.. ...+.+.+.. .+.++|.||
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVS 305 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECC
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEE
Confidence 66 3334443322 356777775
No 150
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.13 E-value=1e-12 Score=138.92 Aligned_cols=137 Identities=20% Similarity=0.272 Sum_probs=98.4
Q ss_pred CCCcEEEEEEEEEcCCCCCcccccceeEEe-------------------eCCCEEEEEcCCCCChHHHHHhHcCCCC--C
Q 005314 455 VKGDIEFQHITFKYPARPDVQIFRDLCLAI-------------------PSGKMVALVGESGSGKSTVISLLQRFYD--P 513 (703)
Q Consensus 455 ~~~~I~~~~vsF~Y~~~~~~~vL~~isl~I-------------------~~G~~vaiVG~SGsGKSTL~~lL~g~y~--p 513 (703)
..+.|+++||++.|. ++++++++.+ ++|+++||+|+||||||||+++|.|++. |
T Consensus 34 ~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp HCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred CccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 346799999999993 5899999998 9999999999999999999999999998 9
Q ss_pred CCCeEEE---CCeeCCCCCHHHHhcceEEEccCCCCC-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhcccc
Q 005314 514 DTGHITL---DGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYD 589 (703)
Q Consensus 514 ~~G~I~i---dG~di~~~~~~~lR~~i~~V~Qe~~LF-~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d 589 (703)
++|+|.+ ||.+.. ...++.+++| |+..++ .-|+.+|+.+. ..+..|-.
T Consensus 109 ~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~-----------------------~~l~~~~~ 160 (308)
T 1sq5_A 109 EHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFV-----------------------SDLKSGVP 160 (308)
T ss_dssp TCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHH-----------------------HHHTTTCS
T ss_pred CCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHH-----------------------HHHhCCCC
Confidence 9999999 997752 2456778999 766554 33677766543 11111111
Q ss_pred ---chhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCC
Q 005314 590 ---TIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALD 630 (703)
Q Consensus 590 ---T~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD 630 (703)
.+. ...+.+ +|++.+.+.+.+|+++|+|.+....+
T Consensus 161 ~i~~P~----~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 161 NVTAPV----YSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp CEEECC----EETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred ceeccc----cccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 111 111111 34444445667899999999988766
No 151
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.12 E-value=2.9e-11 Score=126.88 Aligned_cols=142 Identities=18% Similarity=0.155 Sum_probs=101.1
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
+.++++++.|+.. . ++++|+ +|++++++|++|+||||++..|++++.+..|+|.+.+.|++.-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 5667788888532 1 688888 99999999999999999999999999999999999887765321110
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 005314 539 LVSQEPVLFNDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPK 618 (703)
Q Consensus 539 ~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ 618 (703)
. +...++.. |++-... +..-...+-||.+|+++..++++
T Consensus 144 ---------------q-------------l~~~~~~~-----------~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D 182 (295)
T 1ls1_A 144 ---------------Q-------------LRLLGEKV-----------GVPVLEV--MDGESPESIRRRVEEKARLEARD 182 (295)
T ss_dssp ---------------H-------------HHHHHHHH-----------TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCC
T ss_pred ---------------H-------------HHHhcccC-----------CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCC
Confidence 0 00001111 2211111 11123445679999999889999
Q ss_pred EEEeecc-CcCCCHHHHHHHHHHHHHHcCCceEEEEc
Q 005314 619 ILLLDEA-TSALDAESERVIQDALERVMVGRTTVVIA 654 (703)
Q Consensus 619 ILlLDEa-TSaLD~~se~~v~~~l~~~~~~rT~IvIa 654 (703)
++|+||| ++++|...-..+.+..+....+.+++++.
T Consensus 183 ~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 183 LILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999999 99999988888877777666666766553
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.10 E-value=9.5e-11 Score=123.33 Aligned_cols=98 Identities=18% Similarity=0.310 Sum_probs=73.3
Q ss_pred eeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCC
Q 005314 480 LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGK 559 (703)
Q Consensus 480 isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~ 559 (703)
+++..++|++++|+|++||||||++..|++++.+..|+|.+.+.|.... ...+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHH------
Confidence 4556789999999999999999999999999999999999887765310 0111
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHH---HHHHHhccCCCEEEeeccCc
Q 005314 560 EGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRV---AIARAMVKAPKILLLDEATS 627 (703)
Q Consensus 560 ~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRi---aIARAllk~p~ILlLDEaTS 627 (703)
++...++.. |++. + .++|||+.|++ +|+||+.++|+++|+|||..
T Consensus 150 -------qL~~~~~~~-----------gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 150 -------QLKIWGERV-----------GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -------HHHHHHHHH-----------TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -------HHHHHHHHc-----------CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 122222211 2221 1 24689999999 99999999999999999985
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.08 E-value=1.1e-10 Score=122.48 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=93.5
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNAT 564 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t 564 (703)
++|+.+++||++||||||++..|++.+.+.+| +++.++.+|++ ..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 57999999999999999999999999998888 36777888873 3334444322
Q ss_pred HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHH
Q 005314 565 EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERV 644 (703)
Q Consensus 565 ~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~ 644 (703)
.++.. |++-... ..++..|.+|+++ ++|+++|+| |+++|+..+..+.+...-+
T Consensus 156 ------~~~~~-----------gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 156 ------YAELL-----------QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp ------HHTTT-----------TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred ------HHHhc-----------CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 11111 1111111 1234567888875 999999999 9999987766555433322
Q ss_pred c---CCceEEEE--ccCchHHhh-cCEEEEEeCCEEEE
Q 005314 645 M---VGRTTVVI--AHRLSTIRD-ADLIAVVKNGVIAE 676 (703)
Q Consensus 645 ~---~~rT~IvI--aHrlsti~~-aD~I~vl~~G~Ive 676 (703)
. .+.+++++ +|....+.. +|++..++.|.|+-
T Consensus 209 ~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 209 PFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 2 23456666 899877765 78776677777775
No 154
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.04 E-value=3.5e-11 Score=117.39 Aligned_cols=127 Identities=19% Similarity=0.330 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCC-------------CCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHH
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYD-------------PDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRV 553 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIre 553 (703)
|++++|+||||||||||+++|+|+++ |..|++ +|.++...+.+.+++.+ .|+..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 889986 89888878877777654 3677777888877
Q ss_pred HHhcCCCCCCCHHHHHHHHHH----------hcHHHHHHH--------------hhccccchhcCCCCCCChhHHHHHHH
Q 005314 554 NIAYGKEGNATEAEVLAAAEL----------ANAHQFISS--------------LKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 554 NI~~g~~~~~t~~ei~~A~~~----------a~l~~~I~~--------------Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
|+ || . +.+++.++++. .++.. +.. -++-+...+-++|..-....+||++-
T Consensus 76 ~~-yg-~---~~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~ 149 (186)
T 3a00_A 76 NY-YG-S---TVASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSA 149 (186)
T ss_dssp EE-EE-E---EHHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC------------------------
T ss_pred ee-cc-C---cHHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 76 66 2 23445554443 12211 222 12455556667888877888899999
Q ss_pred HHHhc-----cCCCEEEeec
Q 005314 610 ARAMV-----KAPKILLLDE 624 (703)
Q Consensus 610 ARAll-----k~p~ILlLDE 624 (703)
|+.-+ +.++.+|.++
T Consensus 150 ~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 150 AQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp ---------CCCCSEEEECS
T ss_pred HHHHHHhhcccCCcEEEECc
Confidence 98765 5667777665
No 155
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.03 E-value=6.7e-11 Score=131.28 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=55.8
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCC
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQ 529 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~ 529 (703)
.+.++++.. ..+|+++||+|++ +++||+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 455555432 2479999999999 999999999999999999999999999999999999987654
No 156
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.01 E-value=2.3e-11 Score=127.76 Aligned_cols=96 Identities=19% Similarity=0.239 Sum_probs=57.7
Q ss_pred EEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE---CCeeCCCCCHHHHhcceEEEccCCCCCc-----ccHHH
Q 005314 482 LAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL---DGVEIQKLQLKWLRQQMGLVSQEPVLFN-----DTVRV 553 (703)
Q Consensus 482 l~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i---dG~di~~~~~~~lR~~i~~V~Qe~~LF~-----gTIre 553 (703)
+++.+|++++|+|+||+|||||++.|.|+..|..|+|.+ +|++++... +.++..+++|+|.|.++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999999 898876543 233333899999997754 578 9
Q ss_pred HHh--cCC--------------CCCCCHHHHHHHHHHhcHHH
Q 005314 554 NIA--YGK--------------EGNATEAEVLAAAELANAHQ 579 (703)
Q Consensus 554 NI~--~g~--------------~~~~t~~ei~~A~~~a~l~~ 579 (703)
||. |.. ..+.....+.+|++..++.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 993 220 01112346788887777754
No 157
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.95 E-value=1.5e-12 Score=135.51 Aligned_cols=138 Identities=21% Similarity=0.256 Sum_probs=98.5
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEE
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~ 539 (703)
+++++.+.|. ...+++++++++++| ++|+||+|||||||++.|.+... .|.|.++|.++.+......+++++.
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4556666664 346899999999999 99999999999999999999875 8999999988765555556677888
Q ss_pred EccCCC-CC-cccHHHHH-hcCCCCCC----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 540 VSQEPV-LF-NDTVRVNI-AYGKEGNA----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 540 V~Qe~~-LF-~gTIreNI-~~g~~~~~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
++|++. .+ .-++.||| .++..... ..++..+. +..+. ..|||||+||..||+|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~---------~~~ll-----------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQLL-----------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH---------HHHHH-----------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH---------HHHHH-----------HHHhCCCCCCCEEEEE
Confidence 888864 33 34667777 44421110 01122211 22221 2478999999999999
Q ss_pred hccCCCEEEeeccC
Q 005314 613 MVKAPKILLLDEAT 626 (703)
Q Consensus 613 llk~p~ILlLDEaT 626 (703)
+..+|++ ||++.
T Consensus 184 ~t~~p~~--ld~~l 195 (278)
T 1iy2_A 184 ATNRPDI--LDPAL 195 (278)
T ss_dssp EESCTTS--SCHHH
T ss_pred ecCCchh--CCHhH
Confidence 9999987 78774
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.92 E-value=5.3e-11 Score=133.02 Aligned_cols=158 Identities=17% Similarity=0.237 Sum_probs=96.6
Q ss_pred ceeEEeeCCCEEEEEcCCCCChHHHHHhHcC--CCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHh
Q 005314 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQR--FYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIA 556 (703)
Q Consensus 479 ~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g--~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~ 556 (703)
.+++.+.++..++|+|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. =|+++. ++.+|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecC--
Confidence 4788889999999999999999999998876 67788899998888887655444431 133321 11011
Q ss_pred cCCCCCCCHHHHHHHHHHhc--H---HHHHHHhh----ccccchhcCCCCCCChhHHHHH----------HHHHHhccCC
Q 005314 557 YGKEGNATEAEVLAAAELAN--A---HQFISSLK----QGYDTIVGERGIQLSGGQKQRV----------AIARAMVKAP 617 (703)
Q Consensus 557 ~g~~~~~t~~ei~~A~~~a~--l---~~~I~~Lp----~G~dT~vGe~G~~LSGGQkQRi----------aIARAllk~p 617 (703)
.++..++++.+. + .+.+.... .+|+..+. ..+||||+||. ++||++-..|
T Consensus 229 --------~~~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP 297 (512)
T 2ius_A 229 --------MKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEP 297 (512)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH---HHhhcCCcccccccccccchhccccccccCC
Confidence 111112211100 0 01111100 01221111 24688888753 4778888899
Q ss_pred C-EEEeeccCcCCCHHHHHHHHHHHHHH---cC--CceEEEEccCch
Q 005314 618 K-ILLLDEATSALDAESERVIQDALERV---MV--GRTTVVIAHRLS 658 (703)
Q Consensus 618 ~-ILlLDEaTSaLD~~se~~v~~~l~~~---~~--~rT~IvIaHrls 658 (703)
. ++++||+++.+|.. .+.+.+.|.++ .+ |-++|++|||++
T Consensus 298 ~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 298 YIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred cEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8 78899999999843 34455555433 22 669999999998
No 159
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.91 E-value=8.6e-13 Score=141.13 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=98.2
Q ss_pred EEEEEEEcCCCCCcccccceeEEeeCC-------CEEEEEcCCCCChHHHHHhHcCCC----CCCCCeEEECCeeCCCCC
Q 005314 461 FQHITFKYPARPDVQIFRDLCLAIPSG-------KMVALVGESGSGKSTVISLLQRFY----DPDTGHITLDGVEIQKLQ 529 (703)
Q Consensus 461 ~~~vsF~Y~~~~~~~vL~~isl~I~~G-------~~vaiVG~SGsGKSTL~~lL~g~y----~p~~G~I~idG~di~~~~ 529 (703)
.++++..|. ...+++++++.|++| +.++|+||+|+|||||+++|++.. .|.+|.+..+|.++..+-
T Consensus 21 ~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 21 PKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp CSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred CccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 334444554 246899999999887 899999999999999999999998 788898888877664332
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCC-CCCCC----HHHHHHHHHHhcHHHHHHHhhc-cccchhcCCCCCCChhH
Q 005314 530 LKWLRQQMGLVSQEPVLFNDTVRVNIAYGK-EGNAT----EAEVLAAAELANAHQFISSLKQ-GYDTIVGERGIQLSGGQ 603 (703)
Q Consensus 530 ~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~-~~~~t----~~ei~~A~~~a~l~~~I~~Lp~-G~dT~vGe~G~~LSGGQ 603 (703)
....+..|.+++|...++. |+.|++.... ....+ ..+- .+. +. ..+|. ++.. ...+...||+|+
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~---~~~--i~---~~l~~~~li~-at~~~~~Ls~~l 167 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPS---AKS--IR---IDIQPFTLVG-ATTRSGLLSSPL 167 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCHHH
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcc---ccc--cc---ccCCCeEEEE-ecCCcccCCHHH
Confidence 1112568999999888775 8888874320 00000 0000 000 00 11121 2211 112234799999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHH
Q 005314 604 KQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERV 644 (703)
Q Consensus 604 kQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~ 644 (703)
|||++++ ..||+.+...+.+.|.+.
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 9998655 667776676777766554
No 160
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.91 E-value=2.5e-12 Score=139.50 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=108.5
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcC------------CCCCCCCeEEECCeeCCCCCH-HHHhcce---EEEccCCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQR------------FYDPDTGHITLDGVEIQKLQL-KWLRQQM---GLVSQEPVL 546 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g------------~y~p~~G~I~idG~di~~~~~-~~lR~~i---~~V~Qe~~L 546 (703)
++++|.+++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+.. ..-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 568999999999999999999999999 678999999998854321110 0011222 356677766
Q ss_pred Ccc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCC--CEEEee
Q 005314 547 FND-TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAP--KILLLD 623 (703)
Q Consensus 547 F~g-TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p--~ILlLD 623 (703)
..+ |..|++ . .+....++.+.+ |..+=+..+ ...-..++|+. || +|+++|
T Consensus 96 ~~~~s~~e~L--------~-~~fl~~ir~~d~---il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 96 TKGASTGVGL--------G-NAFLSHVRAVDA---IYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp CCCCCSSSSS--------C-HHHHHHHTTCSE---EEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHH
T ss_pred ccCCcHHHHH--------H-HHHHHHHHHHHH---HHHHHhccc---cceeeeecccc------------Ccchhhhhch
Confidence 543 211111 1 122222221110 000000000 12223356552 99 999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHh-hcCEEE-EEeCC-EEEEecCh
Q 005314 624 EATSALDAESERVIQDALERV-MVGRTTVVIAHRLSTIR-DADLIA-VVKNG-VIAEKGKH 680 (703)
Q Consensus 624 EaTSaLD~~se~~v~~~l~~~-~~~rT~IvIaHrlsti~-~aD~I~-vl~~G-~Ive~Gth 680 (703)
|+++.+|.++-....+.+... .++.++| ++|.+..+. -||+|. +|++| +++..|+.
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti-~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGANTL-EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCSS-SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCcc-ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 999999999988888888876 5543333 399998775 499999 99999 88876754
No 161
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.89 E-value=2.2e-10 Score=112.50 Aligned_cols=82 Identities=22% Similarity=0.270 Sum_probs=67.8
Q ss_pred eEEeeCCCEEEEEcCCCCChHHHHHhHcCCCC-------------CCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCC
Q 005314 481 CLAIPSGKMVALVGESGSGKSTVISLLQRFYD-------------PDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 547 (703)
Q Consensus 481 sl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF 547 (703)
|+...+|+.++|+||||||||||++.|+++++ |..|+ +||++..-++.+.+++.+ .|+.+|+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999986 78888 799999999999999876 6999999
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHH
Q 005314 548 NDTVRVNIAYGKEGNATEAEVLAAA 572 (703)
Q Consensus 548 ~gTIreNI~~g~~~~~t~~ei~~A~ 572 (703)
.+++.+| .|| . +.+.+.+++
T Consensus 88 ~~~~~~n-~YG-t---~~~~v~~~l 107 (197)
T 3ney_A 88 FGSYQGN-MFG-T---KFETVHQIH 107 (197)
T ss_dssp EEEETTE-EEE-E---EHHHHHHHH
T ss_pred hhhhhce-ecc-c---chhhHHHHH
Confidence 9999999 588 3 244555554
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.87 E-value=6.5e-10 Score=112.45 Aligned_cols=170 Identities=19% Similarity=0.177 Sum_probs=90.5
Q ss_pred ccccce-eEEeeCCCEEEEEcCCCCChHHHH-HhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHH
Q 005314 475 QIFRDL-CLAIPSGKMVALVGESGSGKSTVI-SLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVR 552 (703)
Q Consensus 475 ~vL~~i-sl~I~~G~~vaiVG~SGsGKSTL~-~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIr 552 (703)
+.|+.+ .--+++|+.++|+|++|||||||+ +++.....+..+.+.+++.. ..-......+.+++.+|+... .
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~~~~~~~~-----~ 83 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGWDVKPYEE-----K 83 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTCCCHHHHH-----H
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCCCHHHHhh-----C
Confidence 456666 667999999999999999999995 55555555544555555432 111111222334554443210 0
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc--cCCCEEEeeccCcCC-
Q 005314 553 VNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV--KAPKILLLDEATSAL- 629 (703)
Q Consensus 553 eNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll--k~p~ILlLDEaTSaL- 629 (703)
+|+.+-+ ...+.+ ..+++ .+..+-+. +....+.+..++.++ .+|+++++|++|+-+
T Consensus 84 ~~l~~~~---~~~~~~-------------~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~ 142 (247)
T 2dr3_A 84 GMFAMVD---AFTAGI-------------GKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI 142 (247)
T ss_dssp TSEEEEE---CSTTTT-------------CC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT
T ss_pred CcEEEEe---cchhhc-------------ccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc
Confidence 1221110 000000 00000 00000010 112333344444444 479999999999988
Q ss_pred -CHHHHHHHHHHHHHH--cCCceEEEEccCchH---------HhhcCEEEEEeC
Q 005314 630 -DAESERVIQDALERV--MVGRTTVVIAHRLST---------IRDADLIAVVKN 671 (703)
Q Consensus 630 -D~~se~~v~~~l~~~--~~~rT~IvIaHrlst---------i~~aD~I~vl~~ 671 (703)
|+...+.+...+.+. ..+.|+|+++|.... ...||.|+.|+.
T Consensus 143 ~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 143 NKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 543334444555443 247899999998764 356999999964
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.84 E-value=6.9e-12 Score=128.44 Aligned_cols=140 Identities=21% Similarity=0.241 Sum_probs=99.3
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceE
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMG 538 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~ 538 (703)
.+++++.+.|. ...+++++++++++| ++|+||+|||||||++.|.+... .|.|.++|.++.+......+++++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45667776674 246899999999999 99999999999999999999875 899999998876555555667788
Q ss_pred EEccCCC-CC-cccHHHHH-hcCCCCCC----CHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHH
Q 005314 539 LVSQEPV-LF-NDTVRVNI-AYGKEGNA----TEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIAR 611 (703)
Q Consensus 539 ~V~Qe~~-LF-~gTIreNI-~~g~~~~~----t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIAR 611 (703)
.++|+.. .+ .-++.||| .++..... ..++..+. +..+. ..|||||+||..||+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~---------~~~ll-----------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQLL-----------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH---------HHHHH-----------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH---------HHHHH-----------HHHhCCCCCCCEEEE
Confidence 8888764 33 34666777 44421110 11121111 12221 146799999999999
Q ss_pred HhccCCCEEEeeccCc
Q 005314 612 AMVKAPKILLLDEATS 627 (703)
Q Consensus 612 Allk~p~ILlLDEaTS 627 (703)
|+..+|++ ||++.-
T Consensus 159 a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 159 AATNRPDI--LDPALL 172 (254)
T ss_dssp EEESCGGG--SCGGGG
T ss_pred EccCCchh--CCHHHc
Confidence 99999987 788764
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.83 E-value=2e-10 Score=112.22 Aligned_cols=139 Identities=21% Similarity=0.234 Sum_probs=77.9
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCC-----------CCCeEEECCeeCCC--CCHHHHhcceEEEccCCCCCcccHHHHH
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDP-----------DTGHITLDGVEIQK--LQLKWLRQQMGLVSQEPVLFNDTVRVNI 555 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p-----------~~G~I~idG~di~~--~~~~~lR~~i~~V~Qe~~LF~gTIreNI 555 (703)
+++|||++|||||||++.+.+...| ..|+|.++|.++.- ++....++..++++|...-.++ .|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~----~i 106 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG----AL 106 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE----EE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE----EE
Confidence 7999999999999999999998765 57999999976531 1111122223333332110000 00
Q ss_pred hcCCCCCCC-HHHHHHHHHHhcHHHHHHHhhc--cccc---hhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCC
Q 005314 556 AYGKEGNAT-EAEVLAAAELANAHQFISSLKQ--GYDT---IVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSAL 629 (703)
Q Consensus 556 ~~g~~~~~t-~~ei~~A~~~a~l~~~I~~Lp~--G~dT---~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaL 629 (703)
... +.+ .....+ +..|+..+.+ .-+. .++.+ ..|..-..++..+||++.++|+++++| |||+
T Consensus 107 ~v~---d~~~~~s~~~------~~~~~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sal 174 (191)
T 1oix_A 107 LVY---DIAKHLTYEN------VERWLKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSAL 174 (191)
T ss_dssp EEE---ETTCHHHHHT------HHHHHHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTT
T ss_pred EEE---ECcCHHHHHH------HHHHHHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCC
Confidence 000 111 111111 1111111100 0011 11221 122222234578999999999999999 9999
Q ss_pred CHHHHHHHHHHHHH
Q 005314 630 DAESERVIQDALER 643 (703)
Q Consensus 630 D~~se~~v~~~l~~ 643 (703)
|.++...+.+.|.+
T Consensus 175 d~~~v~~l~~~l~~ 188 (191)
T 1oix_A 175 DSTNVEAAFQTILT 188 (191)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999988888764
No 165
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.80 E-value=3.7e-10 Score=109.48 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=62.7
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCC-CCCeEE----------ECCeeCCCCCHHHHhcceEEEccCCCCCcccHHH
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDP-DTGHIT----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRV 553 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIre 553 (703)
.+|++++|+||||||||||+++|++++++ ..|.|. +||.+...++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 37999999999999999999999999863 445553 47777777888888774 57899999999999
Q ss_pred HHhcCCCCCCCHHHHHHHH
Q 005314 554 NIAYGKEGNATEAEVLAAA 572 (703)
Q Consensus 554 NI~~g~~~~~t~~ei~~A~ 572 (703)
| .|| . ..+++.+++
T Consensus 80 n-~yg-~---~~~~i~~~l 93 (180)
T 1kgd_A 80 A-MYG-T---KLETIRKIH 93 (180)
T ss_dssp E-EEE-E---EHHHHHHHH
T ss_pred c-ccc-c---cHHHHHHHH
Confidence 9 677 2 244555554
No 166
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.79 E-value=9.8e-11 Score=117.81 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=52.3
Q ss_pred cEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH-------
Q 005314 458 DIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL------- 530 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~------- 530 (703)
.|+++|++..|. . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888865552 1 466667 8999999999999999999999999999999999999844332
Q ss_pred -HHHhcceEEEccC
Q 005314 531 -KWLRQQMGLVSQE 543 (703)
Q Consensus 531 -~~lR~~i~~V~Qe 543 (703)
..++.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2347889999985
No 167
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.78 E-value=1.4e-09 Score=107.47 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=68.9
Q ss_pred ceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcC
Q 005314 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYG 558 (703)
Q Consensus 479 ~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g 558 (703)
++-=++++|++++|+|++||||||++++|.+.++ .+.+++||+.+|.+ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 4445789999999999999999999999999875 48999999999987 677665
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeecc
Q 005314 559 KEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEA 625 (703)
Q Consensus 559 ~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEa 625 (703)
.....+.++.+++....+.+++..+.++.-. ..++.|.++ ..+++++|+|=+
T Consensus 67 -~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~--------~~~~~~vi~eg~ 118 (207)
T 2qt1_A 67 -KNGFLQYDVLEALNMEKMMSAISCWMESARH------SVVSTDQES--------AEEIPILIIEGF 118 (207)
T ss_dssp -TTSCBCCSSGGGBCHHHHHHHHHHHHHHHTT------SSCCC-------------CCCCEEEEECT
T ss_pred -ccCCChhHHHHHhHHHHHHHHHHHHHhCCCC------CCcCCCeee--------cCCCCEEEEeeh
Confidence 2222222333444555566666555433211 134555554 456788888543
No 168
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.78 E-value=1.3e-08 Score=109.14 Aligned_cols=143 Identities=20% Similarity=0.335 Sum_probs=84.3
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEE-ECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHIT-LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEG 561 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~-idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~ 561 (703)
-+++|+.+.|.|++|||||||+..++.-.....|.+. ++... ..+. .+.+++++.+|+ +.+. .+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~-~~ 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVS-QP 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEE-CC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEe-cC
Confidence 5889999999999999999997666654433344433 33321 1111 112222222211 1111 00
Q ss_pred CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccC--CCEEEeeccCcCC----------
Q 005314 562 NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKA--PKILLLDEATSAL---------- 629 (703)
Q Consensus 562 ~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~--p~ILlLDEaTSaL---------- 629 (703)
. ++ .|-+.++|++.++ |+++|+||+++-+
T Consensus 122 -~------------------------------------~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 122 -D------------------------------------TG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp -S------------------------------------SH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred -C------------------------------------CH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 0 11 2334578888765 9999999999998
Q ss_pred CH---HHHHHHHHHHHHH-----cCCceEEEEccCch----------------HH-hhcCEEEEEeCCEEEEecC
Q 005314 630 DA---ESERVIQDALERV-----MVGRTTVVIAHRLS----------------TI-RDADLIAVVKNGVIAEKGK 679 (703)
Q Consensus 630 D~---~se~~v~~~l~~~-----~~~rT~IvIaHrls----------------ti-~~aD~I~vl~~G~Ive~Gt 679 (703)
|. ..++.+.+.+.++ ..+.|+|+++|-.. .+ ..||.++.+..++++..|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 32 1222334444333 23889999999543 24 4599999998887766555
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.77 E-value=5.8e-09 Score=116.05 Aligned_cols=177 Identities=12% Similarity=0.143 Sum_probs=111.8
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC-eEEECCeeCCCCCHHHHhcce-EEEccCCCCCcccHH
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG-HITLDGVEIQKLQLKWLRQQM-GLVSQEPVLFNDTVR 552 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G-~I~idG~di~~~~~~~lR~~i-~~V~Qe~~LF~gTIr 552 (703)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+.+.+ .+.+.+++++ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCC------C-H
Confidence 468888878999999999999999999999988887766555 67665533 3445544432 111110 0 1
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhc--cCCCEEEeeccCcCCC
Q 005314 553 VNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMV--KAPKILLLDEATSALD 630 (703)
Q Consensus 553 eNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAll--k~p~ILlLDEaTSaLD 630 (703)
+++..| ..++++.....+.. +.+...| -.+-+ ...+|++|.+ +.||++. .+|+++++|+++.-.+
T Consensus 261 ~~l~~g---~l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 261 QNLRTG---KLTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHTS---CCCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHhcC---CCCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 233334 24555544333222 2232222 11222 2478999876 6777776 5799999999999874
Q ss_pred HH--------HHHHHHHHHHHHcC--CceEEEEcc-----------Cch--------HH-hhcCEEEEEeCCEE
Q 005314 631 AE--------SERVIQDALERVMV--GRTTVVIAH-----------RLS--------TI-RDADLIAVVKNGVI 674 (703)
Q Consensus 631 ~~--------se~~v~~~l~~~~~--~rT~IvIaH-----------rls--------ti-~~aD~I~vl~~G~I 674 (703)
.. .-..+.+.|+.+.+ +.|+|+++| |+. .+ ..||.|++|..++.
T Consensus 328 ~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 328 SGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 31 12445556665432 789999999 132 23 46999999987654
No 170
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.75 E-value=2.2e-10 Score=132.16 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=103.2
Q ss_pred cccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCC-CeEEECCeeCCCCCHHHHhcceEEEccCC--------
Q 005314 474 VQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDT-GHITLDGVEIQKLQLKWLRQQMGLVSQEP-------- 544 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~-G~I~idG~di~~~~~~~lR~~i~~V~Qe~-------- 544 (703)
..+++++++.+++|+.+.|+||+|||||||++.|.++..+.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 468999999999999999999999999999999999999988 8899988776544 34688887654
Q ss_pred --------------CCC-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHH
Q 005314 545 --------------VLF-NDTVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAI 609 (703)
Q Consensus 545 --------------~LF-~gTIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaI 609 (703)
+.| ..++.+|+..+.. ......+... ......+++. .++..- .....+|+|+.|++..
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~-~~~~~~~v~~-~~~~~~~L~G----~~~~~~-~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNC-GRTKAPFIDA-TGAHAGALLG----DVRHDP-FQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCT-TCSSCCEEEC-TTCCHHHHHC----EECCCC-C----CCCCGGGGEEC
T ss_pred HHhhccchhhhhhcccccccccccceeeccc-cCCCCCEEEc-CCCCHHhcCc----eEEech-hhcCCccccccccccC
Confidence 111 1233344433311 0000000000 0001111111 111110 2223499999999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHH
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALER 643 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~ 643 (703)
++....++.+|+|||... |++.....+.+.|++
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999998 798888888888864
No 171
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.75 E-value=2.4e-09 Score=124.44 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=97.2
Q ss_pred eEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC--CCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcC
Q 005314 481 CLAIPSGKMVALVGESGSGKSTVISLLQRFYDP--DTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYG 558 (703)
Q Consensus 481 sl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g 558 (703)
++++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++++|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457889999999999999999999999977665 78999 899999999999999999999999999988888887532
Q ss_pred CCCCCC-HHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHH
Q 005314 559 KEGNAT-EAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVI 637 (703)
Q Consensus 559 ~~~~~t-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v 637 (703)
+...+ ..++..+++ ..++-++++| ||.++|.+++..+
T Consensus 82 -pG~~~f~~~~~~~l~----------------------------------------~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 -PGYGDFVGEIRGALE----------------------------------------AADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp -CCSGGGHHHHHHHHH----------------------------------------HCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred -CCccchHHHHHHHHh----------------------------------------hcCcEEEEEc-CCcccchhHHHHH
Confidence 21111 012222221 2355677777 8888888877555
Q ss_pred HHHHHHHcCCceEEEEccCchH
Q 005314 638 QDALERVMVGRTTVVIAHRLST 659 (703)
Q Consensus 638 ~~~l~~~~~~rT~IvIaHrlst 659 (703)
..+.. .+.++|++.|.+..
T Consensus 120 ~~~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 120 TVAER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHH---TTCCEEEEEECGGG
T ss_pred HHHHH---ccCCEEEEecCCch
Confidence 44332 26777788887764
No 172
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.71 E-value=7.5e-11 Score=127.48 Aligned_cols=138 Identities=13% Similarity=0.166 Sum_probs=89.7
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHH
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVN 554 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreN 554 (703)
.+|+++++.+++|+.++|+||+|||||||+++|.+. .+|++..- +..+ ..++..+++++|.+.+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~--~~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNV--NLPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECC--SSCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEE--eccc---hhHHHHHHHhcchhHHH----HHH
Confidence 689999999999999999999999999999999985 46877651 1111 22334588899987653 334
Q ss_pred HhcCCC--CCC-CHHHHHHHHHHhcHHHHHHHh-hccccc-------------hhcCCCCCCChhHHHHHHHHHHhccCC
Q 005314 555 IAYGKE--GNA-TEAEVLAAAELANAHQFISSL-KQGYDT-------------IVGERGIQLSGGQKQRVAIARAMVKAP 617 (703)
Q Consensus 555 I~~g~~--~~~-t~~ei~~A~~~a~l~~~I~~L-p~G~dT-------------~vGe~G~~LSGGQkQRiaIARAllk~p 617 (703)
+..... .+. ....+. ....+.+.+... +-..+| .+..+-..+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 443311 000 000110 112333333210 000111 223455678999999999999999999
Q ss_pred CEEE-eeccCc
Q 005314 618 KILL-LDEATS 627 (703)
Q Consensus 618 ~ILl-LDEaTS 627 (703)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9998 999998
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.61 E-value=1.1e-08 Score=101.58 Aligned_cols=70 Identities=26% Similarity=0.260 Sum_probs=55.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCC-CCCeEE----------ECCeeCCCCCHHHHhcceEEEccCCCCCcccHHH
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDP-DTGHIT----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRV 553 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIre 553 (703)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|.+...++...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 333333 456666667778887765 6788888888888
Q ss_pred HHhcC
Q 005314 554 NIAYG 558 (703)
Q Consensus 554 NI~~g 558 (703)
| .||
T Consensus 83 ~-~yg 86 (208)
T 3tau_A 83 N-YYG 86 (208)
T ss_dssp E-EEE
T ss_pred c-cCC
Confidence 8 577
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.60 E-value=6.7e-09 Score=101.76 Aligned_cols=139 Identities=20% Similarity=0.211 Sum_probs=74.4
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC-----CCC------CCeEEECCeeCC----CCC-HHHHhcceEEEccCCCCCcccHH
Q 005314 489 MVALVGESGSGKSTVISLLQRFY-----DPD------TGHITLDGVEIQ----KLQ-LKWLRQQMGLVSQEPVLFNDTVR 552 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y-----~p~------~G~I~idG~di~----~~~-~~~lR~~i~~V~Qe~~LF~gTIr 552 (703)
+++|+|++|||||||++.+.|.. .|+ .|+|.++|.++. +.. .+.+|+......|+...+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~----- 81 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA----- 81 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE-----
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE-----
Confidence 68999999999999999999874 243 578999997652 222 223333333333332110
Q ss_pred HHHhcCCCCCCCH-HHHHHHHHHhcHHHHHHHh-hcccc-chhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCC
Q 005314 553 VNIAYGKEGNATE-AEVLAAAELANAHQFISSL-KQGYD-TIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSAL 629 (703)
Q Consensus 553 eNI~~g~~~~~t~-~ei~~A~~~a~l~~~I~~L-p~G~d-T~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaL 629 (703)
|... +.++ ....+... ....+... +.+.- -.|+.+ ..|..-.......||++.++|+++++| |||+
T Consensus 82 --i~v~---d~~~~~s~~~~~~---~~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal 150 (199)
T 2f9l_A 82 --LLVY---DIAKHLTYENVER---WLKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--TSAL 150 (199)
T ss_dssp --EEEE---ETTCHHHHHTHHH---HHHHHHHHSCTTCEEEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTT
T ss_pred --EEEE---ECcCHHHHHHHHH---HHHHHHHhcCCCCeEEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--EeCC
Confidence 0000 1111 11111100 00111111 11110 112221 122111112356799999999999999 9999
Q ss_pred CHHHHHHHHHHHHH
Q 005314 630 DAESERVIQDALER 643 (703)
Q Consensus 630 D~~se~~v~~~l~~ 643 (703)
|.+.-..+.+.|.+
T Consensus 151 ~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 151 DSTNVEEAFKNILT 164 (199)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99988888877754
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.55 E-value=7e-09 Score=102.03 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=50.5
Q ss_pred EEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCC-----------CCCccc
Q 005314 482 LAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEP-----------VLFNDT 550 (703)
Q Consensus 482 l~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~-----------~LF~gT 550 (703)
++|++|++++|+|+|||||||++++|.+++.|+.| +.+ +...+... ...+..+++++|++ .++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46899999999999999999999999999977655 222 22222211 11123467777765 344555
Q ss_pred HHHHHhcCCCCCCCHHHHHHHH
Q 005314 551 VRVNIAYGKEGNATEAEVLAAA 572 (703)
Q Consensus 551 IreNI~~g~~~~~t~~ei~~A~ 572 (703)
+++| .|| . ..+++.+++
T Consensus 78 ~~~~-~~g-~---~~~~i~~~l 94 (207)
T 2j41_A 78 YVGN-YYG-T---PVQYVKDTM 94 (207)
T ss_dssp ETTE-EEE-E---EHHHHHHHH
T ss_pred ECCe-ecC-C---CHHHHHHHH
Confidence 6666 355 1 244555443
No 176
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.51 E-value=2.8e-08 Score=107.11 Aligned_cols=161 Identities=18% Similarity=0.144 Sum_probs=85.4
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcC--CCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHH
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQR--FYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVR 552 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g--~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIr 552 (703)
.+|++++++++ .|+|||++|||||||++.|.| |.++..|.++-.+..+.-.+...-.+..+...+.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~------- 94 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPR------- 94 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTT-------
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCC-------
Confidence 57999999999 999999999999999999999 788888888655544321111000112222222211
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHH---------------hhcc-----ccchh-cC--CCCCCChhHHHHHHH
Q 005314 553 VNIAYGKEGNATEAEVLAAAELANAHQFISS---------------LKQG-----YDTIV-GE--RGIQLSGGQKQRVAI 609 (703)
Q Consensus 553 eNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~---------------Lp~G-----~dT~v-Ge--~G~~LSGGQkQRiaI 609 (703)
..-.+.+++.+.+..... -+.. -|++ +||+= +. .+.+.++.++|+.++
T Consensus 95 -------~~~~~~~~v~~~i~~~~~--~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~ 165 (360)
T 3t34_A 95 -------KKFTDFAAVRKEIQDETD--RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENM 165 (360)
T ss_dssp -------CCBSCHHHHHHHHHHHHH--HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHH
T ss_pred -------cccCCHHHHHHHHHHHHH--HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHH
Confidence 001122233322221110 0000 0111 13320 11 123577899999999
Q ss_pred HHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcC-C-ceEEEEcc
Q 005314 610 ARAMVKAPKILLLDEATSALDAESERVIQDALERVMV-G-RTTVVIAH 655 (703)
Q Consensus 610 ARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~-~-rT~IvIaH 655 (703)
+++.+++|+++||.-..+..|..+ ....+.+..+.+ + +|++++++
T Consensus 166 ~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 166 VRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999777763333344433 233334444332 3 56666664
No 177
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.50 E-value=3.6e-09 Score=104.21 Aligned_cols=60 Identities=28% Similarity=0.396 Sum_probs=47.1
Q ss_pred EEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE--EECCeeCC
Q 005314 463 HITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI--TLDGVEIQ 526 (703)
Q Consensus 463 ~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I--~idG~di~ 526 (703)
|+++++. .....+..++..++|+.++|+|+|||||||++++|++.+. ..|.+ .+||.++.
T Consensus 4 ~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4555443 3457788899999999999999999999999999999997 78998 89986654
No 178
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.50 E-value=6.9e-09 Score=117.48 Aligned_cols=90 Identities=27% Similarity=0.241 Sum_probs=63.5
Q ss_pred EEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC-eE-EECCeeCCC-------CCH---HHHhcceEEEccCCCCCcc
Q 005314 482 LAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG-HI-TLDGVEIQK-------LQL---KWLRQQMGLVSQEPVLFND 549 (703)
Q Consensus 482 l~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G-~I-~idG~di~~-------~~~---~~lR~~i~~V~Qe~~LF~g 549 (703)
..+++|++++|+|+||||||||+++|++.+.|.+| +| ++||.++.+ ++. ..+++++++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36889999999999999999999999999999997 78 499977643 232 23456789999872
Q ss_pred cHHHHHhcCCCC---CCCHHHHHHHHHHhc
Q 005314 550 TVRVNIAYGKEG---NATEAEVLAAAELAN 576 (703)
Q Consensus 550 TIreNI~~g~~~---~~t~~ei~~A~~~a~ 576 (703)
+..+|+.+.... ....++++++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 456676654211 122344555555443
No 179
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.50 E-value=1.2e-07 Score=105.47 Aligned_cols=123 Identities=24% Similarity=0.342 Sum_probs=80.8
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHH
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVN 554 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreN 554 (703)
..++++++.+++| +.|+||+|+|||||++.+.+.... .+ +.-+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f---------~~is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PF---------FHISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CE---------EEEEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------Ce---------eeCCHHHH
Confidence 4678888888887 999999999999999999873210 01 11111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCc-------
Q 005314 555 IAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATS------- 627 (703)
Q Consensus 555 I~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTS------- 627 (703)
+.. .+| .|++++|-.+++|....|.||++||+.+
T Consensus 86 ~~~---------------------------------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 86 VEL---------------------------------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp TTC---------------------------------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred HHH---------------------------------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 000 011 2688999999999999999999999944
Q ss_pred ---CCCHHHHHHHHHHHHHH-----cCCceEEEEccCchHHh-------hcCEEEEE
Q 005314 628 ---ALDAESERVIQDALERV-----MVGRTTVVIAHRLSTIR-------DADLIAVV 669 (703)
Q Consensus 628 ---aLD~~se~~v~~~l~~~-----~~~rT~IvIaHrlsti~-------~aD~I~vl 669 (703)
+.|.+.++.+.+.+..+ ..+..+|..||++..+. +.|+.+.+
T Consensus 127 ~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i 183 (476)
T 2ce7_A 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVV 183 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred ccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeec
Confidence 56666666665555433 13557788899986542 46665554
No 180
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.47 E-value=1.3e-08 Score=103.83 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=35.9
Q ss_pred cEEEEEE-EEEcCCCCCcccccceeEEeeC---CCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 458 DIEFQHI-TFKYPARPDVQIFRDLCLAIPS---GKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 458 ~I~~~~v-sF~Y~~~~~~~vL~~isl~I~~---G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.|+++|| +|+|.+ +.++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 45799999999999 9999999999999999999998855
No 181
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.44 E-value=1.2e-07 Score=102.07 Aligned_cols=143 Identities=16% Similarity=0.300 Sum_probs=85.7
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCC-----------CCCCeEEECCeeCCCCCHHHHhcceEEEccCCCC----CcccHHH
Q 005314 489 MVALVGESGSGKSTVISLLQRFYD-----------PDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL----FNDTVRV 553 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~-----------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~L----F~gTIre 553 (703)
+++|||++|+|||||++.|.|... |..|.|.++|.++. +....|++.|.|.- |..|+ +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 499999999999999999999765 67899999997652 23456776664432 33333 2
Q ss_pred HHhcCC----CCCCCHHH--HHHHHHHhcHHHHHHHhh-cccc-chhcCCCCCCChhHHHHHHHH----HHh-ccCCCEE
Q 005314 554 NIAYGK----EGNATEAE--VLAAAELANAHQFISSLK-QGYD-TIVGERGIQLSGGQKQRVAIA----RAM-VKAPKIL 620 (703)
Q Consensus 554 NI~~g~----~~~~t~~e--i~~A~~~a~l~~~I~~Lp-~G~d-T~vGe~G~~LSGGQkQRiaIA----RAl-lk~p~IL 620 (703)
.+...+ --++++.. ..+..+ ...+.+..+. .+.- -.|+.+--.+|+|++||++++ |++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 222110 01222111 111111 1223333321 1111 122444445788899998887 776 555555
Q ss_pred EeeccCcCCCHHHHHHHHHHHHHH
Q 005314 621 LLDEATSALDAESERVIQDALERV 644 (703)
Q Consensus 621 lLDEaTSaLD~~se~~v~~~l~~~ 644 (703)
+||||+|.+.-..+.+.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 899999999888888888664
No 182
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.42 E-value=2.3e-08 Score=98.41 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=43.6
Q ss_pred eeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCC
Q 005314 480 LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPV 545 (703)
Q Consensus 480 isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~ 545 (703)
..++.++|+.++|+|+|||||||++++|.+.+ |.+.+||.++... ....+..+++++|++.
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 34667899999999999999999999999987 9999999877531 1122235677877653
No 183
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.42 E-value=5.7e-08 Score=102.82 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=57.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH----HHH-----hcceEEE-ccCC
Q 005314 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL----KWL-----RQQMGLV-SQEP 544 (703)
Q Consensus 476 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~----~~l-----R~~i~~V-~Qe~ 544 (703)
++++++|++++|++++++|++|+||||++..|++.+.+..|+|++.+.|+..... ..| +.++.++ +|.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 3468889999999999999999999999999999999999999999988865431 344 6678888 6654
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=6.3e-08 Score=95.09 Aligned_cols=45 Identities=18% Similarity=0.077 Sum_probs=24.9
Q ss_pred EcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 467 KYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 467 ~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+||.++..++++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 577667788999999999999999999999999999999999776
No 185
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.39 E-value=1.4e-08 Score=98.05 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=48.6
Q ss_pred cceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCe--eCCCCC----HHHHhcceEEEccCC
Q 005314 478 RDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGV--EIQKLQ----LKWLRQQMGLVSQEP 544 (703)
Q Consensus 478 ~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~--di~~~~----~~~lR~~i~~V~Qe~ 544 (703)
+++++.+.+| .++|+||||||||||+.+|.++..+..|...-.+. ++-... ....+..|.+++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 99999999999999999999988888776543331 111111 002356799999986
No 186
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.36 E-value=1e-08 Score=114.73 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=97.4
Q ss_pred EEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEE
Q 005314 460 EFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGL 539 (703)
Q Consensus 460 ~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~ 539 (703)
+++++...|. +..+++++++.+++| +.|+||+|+|||||++.|.+... .|.|.++|.++.+.-....++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 3445544453 235799999999999 99999999999999999999875 7899999998876655555667888
Q ss_pred EccCCC-CC-cccHHHHH-hcCCCCC----CCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHH
Q 005314 540 VSQEPV-LF-NDTVRVNI-AYGKEGN----ATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARA 612 (703)
Q Consensus 540 V~Qe~~-LF-~gTIreNI-~~g~~~~----~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARA 612 (703)
++|+.. .+ .-.+-|+| .++.... ...++..+.+ ..++. .|||||+|+..|++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEE
Confidence 888864 22 23556777 4442111 1122222221 12222 367888899999999
Q ss_pred hccCCCEEEeeccCcC
Q 005314 613 MVKAPKILLLDEATSA 628 (703)
Q Consensus 613 llk~p~ILlLDEaTSa 628 (703)
...+|++ ||||.--
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 9999987 8888753
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.28 E-value=5.4e-07 Score=88.67 Aligned_cols=126 Identities=20% Similarity=0.266 Sum_probs=74.7
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCCHHHH
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNATEAEV 568 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t~~ei 568 (703)
.++|+|++||||||+.++|.++ |...+|+- .+.+. +.. +.. +.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d--------~~~~~------------------~~~--~~~---~~~ 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD--------VVARE------------------VVA--KDS---PLL 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH--------HHHHH------------------TTC--SSC---HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH--------HHHHH------------------Hcc--CCh---HHH
Confidence 6999999999999999999993 66666552 11111 100 000 111
Q ss_pred HHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCc
Q 005314 569 LAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGR 648 (703)
Q Consensus 569 ~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~r 648 (703)
.+ ....+ |+. .-.+.|+.+|..+++.++.+|..+..+ ++.+++...+.+.+.+... .+.
T Consensus 48 ~~---------i~~~~--------g~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~ 106 (206)
T 1jjv_A 48 SK---------IVEHF--------GAQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAP 106 (206)
T ss_dssp HH---------HHHHH--------CTT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSS
T ss_pred HH---------HHHHh--------CHH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCC
Confidence 11 11111 221 224788999999999999988754433 3456666666666655443 356
Q ss_pred eEEEEccCchH---HhhcCEEEEEeC
Q 005314 649 TTVVIAHRLST---IRDADLIAVVKN 671 (703)
Q Consensus 649 T~IvIaHrlst---i~~aD~I~vl~~ 671 (703)
++|+-+|-+.. .+.||.+++++-
T Consensus 107 ~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 107 YTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp EEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred EEEEEechhhhcCcHhhCCEEEEEEC
Confidence 78877887765 367999999963
No 188
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.27 E-value=7.6e-08 Score=102.72 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=50.8
Q ss_pred CCCCcEEEEEEEEEcCCCCCccccc--------------ceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 454 NVKGDIEFQHITFKYPARPDVQIFR--------------DLCLAIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 454 ~~~~~I~~~~vsF~Y~~~~~~~vL~--------------~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
..++.|+|+||+|.||. ++.+|+ |+++.|.+||+++|||++|+|||||+++|.++.
T Consensus 129 ~~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 129 NARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hhcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34678999999999995 356888 999999999999999999999999999999986
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.25 E-value=3.3e-08 Score=99.60 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=51.1
Q ss_pred eeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC------CHHH----HhcceEEEccCCCCCc
Q 005314 480 LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL------QLKW----LRQQMGLVSQEPVLFN 548 (703)
Q Consensus 480 isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~------~~~~----lR~~i~~V~Qe~~LF~ 548 (703)
-+.+.++|++++|+|++||||||++++|.++ .|+|.++|.|.... .... .++.+++++|++.+|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3446689999999999999999999999998 79999999876432 2221 2567899999877654
No 190
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.24 E-value=3.2e-06 Score=92.47 Aligned_cols=164 Identities=19% Similarity=0.195 Sum_probs=101.4
Q ss_pred EEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHH-Hhcce
Q 005314 459 IEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKW-LRQQM 537 (703)
Q Consensus 459 I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~-lR~~i 537 (703)
+..++++..|... . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+......+ |+..
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 4445566677532 1 578887 89999999999999999999999999999999999888876543322 2210
Q ss_pred EEEccCCCCCcccHHHHHhcC-CCCCCCHHHHHHHHHHhcHHHHHHHh-hccccchhcCCCCCCC---hhHHHHHHHHHH
Q 005314 538 GLVSQEPVLFNDTVRVNIAYG-KEGNATEAEVLAAAELANAHQFISSL-KQGYDTIVGERGIQLS---GGQKQRVAIARA 612 (703)
Q Consensus 538 ~~V~Qe~~LF~gTIreNI~~g-~~~~~t~~ei~~A~~~a~l~~~I~~L-p~G~dT~vGe~G~~LS---GGQkQRiaIARA 612 (703)
.=+.|+-+. ..+..+..++. .+.+..+ .++||..+=+....+. .-..+..+++|+
T Consensus 149 ------------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 149 ------------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (425)
T ss_dssp ------------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred ------------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence 001222111 01123344442 2334454 3688876655443443 345667788888
Q ss_pred hccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q 005314 613 MVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAH 655 (703)
Q Consensus 613 llk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaH 655 (703)
+..++-+|++| ++++.|.... .+.+... -+.|.|++|+
T Consensus 209 ~~pd~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 209 LGPDEVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HCCSEEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEES
T ss_pred cCCceEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeC
Confidence 87666778888 5566555422 2333332 2467788775
No 191
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.21 E-value=6.7e-08 Score=102.06 Aligned_cols=126 Identities=15% Similarity=0.228 Sum_probs=77.4
Q ss_pred cccccceeEEeeCCC------EEEEEcCCCCChHHHHHhHcCCCC--CCCCeEEECCeeCCCCCHHHHhcceEEEccCCC
Q 005314 474 VQIFRDLCLAIPSGK------MVALVGESGSGKSTVISLLQRFYD--PDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPV 545 (703)
Q Consensus 474 ~~vL~~isl~I~~G~------~vaiVG~SGsGKSTL~~lL~g~y~--p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~ 545 (703)
.+.|++++..+..++ ++||+|+|||||||++++|.++++ |.+|. ++++++|.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f 133 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeeccc
Confidence 467888888888777 999999999999999999999987 44554 556666666
Q ss_pred CCcccHHHHHh----cCCCCCCCHHHHHHHHHHhcHHHHHHHhhcccc-chhcCCCCCCChhHHHHHHHHHHhccCCCEE
Q 005314 546 LFNDTVRVNIA----YGKEGNATEAEVLAAAELANAHQFISSLKQGYD-TIVGERGIQLSGGQKQRVAIARAMVKAPKIL 620 (703)
Q Consensus 546 LF~gTIreNI~----~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQkQRiaIARAllk~p~IL 620 (703)
.+.....+... +|.+...+.+. +.+++..|.+|-+ ..+- .+|-+..+|+..+...+..|+|+
T Consensus 134 ~~~~~~l~~~~~~~~~g~P~~~D~~~---------l~~~L~~L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIV 200 (321)
T 3tqc_A 134 LYSNAKLEKQGLMKRKGFPESYDMPS---------LLRVLNAIKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIV 200 (321)
T ss_dssp BCCHHHHHHTTCGGGTTSGGGBCHHH---------HHHHHHHHHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEE
T ss_pred ccchhhhhhHHHHhhccCcccccHHH---------HHHHHHhhhccccccccc----hhhhhccccccCceeeccCCCEE
Confidence 55444333321 33121222222 3344566666641 1110 12222224443334566789999
Q ss_pred EeeccCcCCCH
Q 005314 621 LLDEATSALDA 631 (703)
Q Consensus 621 lLDEaTSaLD~ 631 (703)
|++.+..-.|.
T Consensus 201 IvEGi~lL~~~ 211 (321)
T 3tqc_A 201 ILEGLNILQTG 211 (321)
T ss_dssp EEECTTTTCCC
T ss_pred EEEcccccccc
Confidence 99988775543
No 192
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.16 E-value=5.5e-07 Score=92.53 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=49.8
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAVVK 670 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~vl~ 670 (703)
|++|||||..+|++++||||| |+++...+. +....|.|+++++|..+....||++++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETAL---RAAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 988765443 33446899999999999888889886664
No 193
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.16 E-value=5.1e-06 Score=88.82 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=44.6
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE-EECCeeCCCCCHHHHhcceEEEccCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI-TLDGVEIQKLQLKWLRQQMGLVSQEP 544 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I-~idG~di~~~~~~~lR~~i~~V~Qe~ 544 (703)
-+++|+.+.|.||+|||||||+..+++...+..|.| ++|+.+..+ . .+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~--~-~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD--P-VYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC--H-HHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc--h-HHHHHcCCchhhh
Confidence 489999999999999999999999999888888866 566644322 2 2445677766553
No 194
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.11 E-value=2.5e-06 Score=100.81 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=52.1
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEeeccCc-CCCHHHHHHHHHHHHHHcCC-ceEEE-EccCchHHh
Q 005314 597 IQLSGGQKQRVAIARAMVKAPKILLLDEATS-ALDAESERVIQDALERVMVG-RTTVV-IAHRLSTIR 661 (703)
Q Consensus 597 ~~LSGGQkQRiaIARAllk~p~ILlLDEaTS-aLD~~se~~v~~~l~~~~~~-rT~Iv-IaHrlsti~ 661 (703)
.-+|+|+.+|..++++++.+++++|+|||.. .||.+.-..+.+.+....++ +++++ .||....+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 4578999999999999999999999999997 89988766676666665544 55655 389877654
No 195
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.11 E-value=1.4e-06 Score=92.26 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.3
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 589999999999999999999876654
No 196
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.10 E-value=2.6e-08 Score=97.59 Aligned_cols=33 Identities=39% Similarity=0.546 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCee
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVE 524 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~d 524 (703)
...|+|+|++||||||+.++|.+. |...+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 357999999999999999999986 777777543
No 197
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.06 E-value=9e-06 Score=87.29 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=50.2
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEee-ccCcCCCHHHHHHHHHHHHHHcCCceEEEEc--cCchH
Q 005314 597 IQLSGGQKQRVAIARAMVKAPKILLLD-EATSALDAESERVIQDALERVMVGRTTVVIA--HRLST 659 (703)
Q Consensus 597 ~~LSGGQkQRiaIARAllk~p~ILlLD-EaTSaLD~~se~~v~~~l~~~~~~rT~IvIa--Hrlst 659 (703)
..+|+|++|++. |.+...++-++++| ++++++|.+....+.+.+.....++.+|+|. |++..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 468999999887 66666777889999 9999999998888888877765578888888 88753
No 198
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.05 E-value=5.4e-06 Score=90.83 Aligned_cols=40 Identities=30% Similarity=0.432 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEI 525 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di 525 (703)
++..++++|++||||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999999999998876665
No 199
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.02 E-value=7.9e-07 Score=100.94 Aligned_cols=58 Identities=17% Similarity=0.359 Sum_probs=47.6
Q ss_pred EEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC
Q 005314 461 FQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG 522 (703)
Q Consensus 461 ~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG 522 (703)
++++..+|. +..+++++++++ +|+.+.|+||+|+|||||++.|.+...+..|+|.++|
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 345555553 235788888888 8999999999999999999999999988888887766
No 200
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.95 E-value=1.1e-05 Score=85.73 Aligned_cols=104 Identities=14% Similarity=0.200 Sum_probs=68.0
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHH
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVN 554 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreN 554 (703)
+-|+.+.--++||+.+.|.|++|+|||||+.-++.-.-...+. +.|++=
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSl------------ 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSL------------ 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEES------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeC------------
Confidence 3466666579999999999999999999986665433222222 333221
Q ss_pred HhcCCCCCCCHHHHHHHH----HHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccCcCCC
Q 005314 555 IAYGKEGNATEAEVLAAA----ELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEATSALD 630 (703)
Q Consensus 555 I~~g~~~~~t~~ei~~A~----~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaTSaLD 630 (703)
+.+.+++..-+ ...+++.+. .| +||++++||++.|...+.+++++|.|+|+..+|
T Consensus 83 -------Ems~~ql~~Rlls~~~~v~~~~l~-------------~g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 -------EMSAEQLALRALSDLTSINMHDLE-------------SG-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp -------SSCHHHHHHHHHHHHHCCCHHHHH-------------HT-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred -------CCCHHHHHHHHHHHhhCCCHHHHh-------------cC-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 23444443221 111222211 12 699999999999999999999999999876544
No 201
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.91 E-value=1.8e-06 Score=82.52 Aligned_cols=38 Identities=34% Similarity=0.378 Sum_probs=34.1
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ 526 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~ 526 (703)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999876 89999987765
No 202
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.91 E-value=2.1e-06 Score=84.27 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=41.7
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCH
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQL 530 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~ 530 (703)
..++|++++|+|+|||||||+++.|.+++.+..|.|.+.+.|......
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 367899999999999999999999999999999999887777655444
No 203
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.87 E-value=4.4e-05 Score=82.02 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=32.6
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHc----CCceEEEEccCchHH
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVM----VGRTTVVIAHRLSTI 660 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~----~~rT~IvIaHrlsti 660 (703)
.+|.+|+|||+... |.+.-..+.+.+.+.. .+.++|+++|+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999987 8776666666664433 366788889988543
No 204
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.72 E-value=0.00014 Score=75.33 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHHhccCCCEEEeeccCcCCCHHH----------HHHHHHHHHHHcC-----CceEEEEccCchH-----
Q 005314 600 SGGQKQRVAIARAMVKAPKILLLDEATSALDAES----------ERVIQDALERVMV-----GRTTVVIAHRLST----- 659 (703)
Q Consensus 600 SGGQkQRiaIARAllk~p~ILlLDEaTSaLD~~s----------e~~v~~~l~~~~~-----~rT~IvIaHrlst----- 659 (703)
++++++|-.+++|...+|.+|++||+.+-++... ...+...++.... +..+|..|+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3678888888888888999999999988776432 1223344443321 2345556887543
Q ss_pred HhhcCEEEEEe
Q 005314 660 IRDADLIAVVK 670 (703)
Q Consensus 660 i~~aD~I~vl~ 670 (703)
.+++|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 35678776664
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.71 E-value=2.8e-06 Score=81.57 Aligned_cols=41 Identities=41% Similarity=0.502 Sum_probs=34.1
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC--eEEECCeeCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPDTG--HITLDGVEIQ 526 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G--~I~idG~di~ 526 (703)
++|+.++|+|++||||||++++|.+.+.| .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 67 6777775443
No 206
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.66 E-value=5.1e-05 Score=83.76 Aligned_cols=64 Identities=16% Similarity=0.274 Sum_probs=41.8
Q ss_pred CCCEEEeeccCcCCCH-HHHHHHHHHHHHHc-CCceEEEEccCch-HHh-hcCEEEE-EeCCEEEEecC
Q 005314 616 APKILLLDEATSALDA-ESERVIQDALERVM-VGRTTVVIAHRLS-TIR-DADLIAV-VKNGVIAEKGK 679 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~-~se~~v~~~l~~~~-~~rT~IvIaHrls-ti~-~aD~I~v-l~~G~Ive~Gt 679 (703)
+|++|++||+..-.+. .+...+...+.... .++++|++||+.. .+. ..+++.- ++.|.+++-+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~ 262 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 8999999999988774 46666777776644 4678888899843 222 1222222 45566665553
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.66 E-value=6.2e-06 Score=97.88 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=29.3
Q ss_pred eEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCC
Q 005314 481 CLAIPSGKMVALVGESGSGKSTVISLLQRFYDP 513 (703)
Q Consensus 481 sl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p 513 (703)
+|.+++|+.+.|+||+|||||||+++|.+.+.+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 346899999999999999999999999998743
No 208
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.66 E-value=0.0002 Score=71.95 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=24.2
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCCCCCe
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDPDTGH 517 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p~~G~ 517 (703)
+|+|||++|+|||||++.|+|-..+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999977665553
No 209
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.64 E-value=6e-05 Score=80.39 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=25.0
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
-+++|+.+.|.|++|||||||+.-++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999776653
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.63 E-value=0.00011 Score=76.60 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=49.5
Q ss_pred EEEEEEEcCCCCCcccccc-eeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCC
Q 005314 461 FQHITFKYPARPDVQIFRD-LCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKL 528 (703)
Q Consensus 461 ~~~vsF~Y~~~~~~~vL~~-isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~ 528 (703)
.+++...|.... ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 77 ~~~l~~~~~~~~-----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 77 YDELSNLFGGDK-----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHTTCSC-----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHhcccc-----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 444555564321 45 778877 999999999999999999999999999999999988887554
No 211
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.63 E-value=5.2e-05 Score=76.12 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=75.7
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCC-cccHHHHHhcCCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTVRVNIAYGKEG 561 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF-~gTIreNI~~g~~~ 561 (703)
.+..|+.+.++|++||||||++.+++.-.....|. ...+.++.|.|... .-++.+|+......
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 45679999999999999999887653211111111 13567788888754 34777777543111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCC----CC---CCChhHHHHHHHHHHhccCCCEEEeeccCc-CCCHHH
Q 005314 562 NATEAEVLAAAELANAHQFISSLKQGYDTIVGER----GI---QLSGGQKQRVAIARAMVKAPKILLLDEATS-ALDAES 633 (703)
Q Consensus 562 ~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~----G~---~LSGGQkQRiaIARAllk~p~ILlLDEaTS-aLD~~s 633 (703)
... ..-|+....... +. --..|+-.+.. +.-+++-+++|+||+-. .+|...
T Consensus 136 ~~~-------------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 136 EPG-------------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp CTT-------------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHH
T ss_pred ccC-------------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHH
Confidence 110 111332221111 11 12446655553 44689999999999976 577776
Q ss_pred HHHHHHHHHHHcCCceEEE
Q 005314 634 ERVIQDALERVMVGRTTVV 652 (703)
Q Consensus 634 e~~v~~~l~~~~~~rT~Iv 652 (703)
.....+.+.....++.+|+
T Consensus 195 ~~~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 195 LLVVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp HHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHhhCCCCeEEE
Confidence 6445555544444443333
No 212
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.62 E-value=1.1e-05 Score=85.98 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=38.5
Q ss_pred cccccceeEEeeCCCE--EEEEcCCCCChHHHHHhHcCCCCCCCCe
Q 005314 474 VQIFRDLCLAIPSGKM--VALVGESGSGKSTVISLLQRFYDPDTGH 517 (703)
Q Consensus 474 ~~vL~~isl~I~~G~~--vaiVG~SGsGKSTL~~lL~g~y~p~~G~ 517 (703)
..+++.++..|+.|+. +.+.||+|+||||+++.+++...+..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 4588999999999998 9999999999999999999987665543
No 213
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.55 E-value=2.2e-05 Score=76.58 Aligned_cols=58 Identities=21% Similarity=0.432 Sum_probs=39.1
Q ss_pred EEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcC----CC----CCCCCeEEECCee
Q 005314 464 ITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQR----FY----DPDTGHITLDGVE 524 (703)
Q Consensus 464 vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g----~y----~p~~G~I~idG~d 524 (703)
.+|+||+- ..+++++|+..+++ +++++|++|+|||||++.+.+ .| .++.+.+.++|..
T Consensus 5 ~~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 5 FDWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp ----------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 35678753 46899999998888 589999999999999999986 22 3345666666643
No 214
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.53 E-value=5.3e-05 Score=81.06 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=26.7
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPDT 515 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~ 515 (703)
+++..+.|+||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999998775543
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.52 E-value=0.00024 Score=72.04 Aligned_cols=45 Identities=29% Similarity=0.471 Sum_probs=29.4
Q ss_pred cccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCee
Q 005314 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVE 524 (703)
Q Consensus 476 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~d 524 (703)
.++++++.+++| +.|+||+|+||||+++.|.+.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 355555555555 9999999999999999999876422 35555543
No 216
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.49 E-value=6.7e-06 Score=82.70 Aligned_cols=69 Identities=23% Similarity=0.270 Sum_probs=50.1
Q ss_pred CCEEEEEcCCCCChHHHHHhHc---CCCCCCCCeE--------EECCeeCCCCC-HHHHhcceEEEc------cCCCCCc
Q 005314 487 GKMVALVGESGSGKSTVISLLQ---RFYDPDTGHI--------TLDGVEIQKLQ-LKWLRQQMGLVS------QEPVLFN 548 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~---g~y~p~~G~I--------~idG~di~~~~-~~~lR~~i~~V~------Qe~~LF~ 548 (703)
.-.++|+|||||||||+.+.|. |+...+.|.+ .-.|.++.+.. ...+-+++.+++ |..+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 6656666766 34577766553 556667777777 4556666
Q ss_pred ccHHHHH
Q 005314 549 DTVRVNI 555 (703)
Q Consensus 549 gTIreNI 555 (703)
..|.+||
T Consensus 89 ~~v~~~i 95 (233)
T 3r20_A 89 EDVSSEI 95 (233)
T ss_dssp EECTTGG
T ss_pred eehhhhh
Confidence 6666665
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.45 E-value=1.3e-05 Score=79.05 Aligned_cols=43 Identities=35% Similarity=0.335 Sum_probs=38.4
Q ss_pred EEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCC--eEEECCee
Q 005314 482 LAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTG--HITLDGVE 524 (703)
Q Consensus 482 l~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G--~I~idG~d 524 (703)
+.+++|..++|+|++||||||+.+.|.+.+.|..| .+.+||.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45789999999999999999999999999988889 88888643
No 218
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.44 E-value=4.8e-05 Score=83.96 Aligned_cols=194 Identities=15% Similarity=0.091 Sum_probs=97.5
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCC------------CCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcc-cHHHH
Q 005314 488 KMVALVGESGSGKSTVISLLQRFY------------DPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TVRVN 554 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y------------~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~g-TIreN 554 (703)
-++||||++|+|||||++.|.|.. +|..|.+.++|.++.-++..-+|+..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 379999999999999999999985 37889999999977655555556666666676666643 34455
Q ss_pred HhcCC--------CCCCCHHHHHHHHHHhcHHHHHHHhh-------ccccchhcCCCCCCChhHHHHHHHHHHhc--cCC
Q 005314 555 IAYGK--------EGNATEAEVLAAAELANAHQFISSLK-------QGYDTIVGERGIQLSGGQKQRVAIARAMV--KAP 617 (703)
Q Consensus 555 I~~g~--------~~~~t~~ei~~A~~~a~l~~~I~~Lp-------~G~dT~vGe~G~~LSGGQkQRiaIARAll--k~p 617 (703)
+...+ ....++++. ++ .+.+.... +..|-. .++ .-+--+- .-.+++.+. ...
T Consensus 261 i~~ad~vllv~d~~~~~~~~~~-~i------~~~l~~~~~~~ilv~NK~Dl~-~~~--~~~~~~~-~~~~~~~~~~~~~~ 329 (439)
T 1mky_A 261 IEKADVVVIVLDATQGITRQDQ-RM------AGLMERRGRASVVVFNKWDLV-VHR--EKRYDEF-TKLFREKLYFIDYS 329 (439)
T ss_dssp HHHCSEEEEEEETTTCCCHHHH-HH------HHHHHHTTCEEEEEEECGGGS-TTG--GGCHHHH-HHHHHHHCGGGTTS
T ss_pred HhhCCEEEEEEeCCCCCCHHHH-HH------HHHHHHcCCCEEEEEECccCC-Cch--hhHHHHH-HHHHHHHhccCCCC
Confidence 54431 111233321 11 11222111 122211 000 0011111 114455443 345
Q ss_pred CEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhc---------CEEEEEeC-----CEEEEecChhH
Q 005314 618 KILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTI-RDA---------DLIAVVKN-----GVIAEKGKHET 682 (703)
Q Consensus 618 ~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti-~~a---------D~I~vl~~-----G~Ive~Gth~e 682 (703)
+++ +|||++.+.-..+.+.+.+.....+.-+-||+++.+ +.+ =+|...-. =.++-.++.-+
T Consensus 330 ~~~----~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~~~~~ki~y~~q~~~~p~~~~~~~n~~~ 405 (439)
T 1mky_A 330 PLI----FTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIE 405 (439)
T ss_dssp CEE----ECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCSTTCCEEEEEEEETTTTEEEEEESCST
T ss_pred cEE----EEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCCCCcEEEEEEecCCCCCEEEEEEcCcc
Confidence 554 499999988888877776654443333455555432 111 14433321 13455566666
Q ss_pred HhccCCcHHHHHHHhhh
Q 005314 683 LVHVKDGIYASLVALQT 699 (703)
Q Consensus 683 Ll~~~~g~Y~~l~~~q~ 699 (703)
++. ..|.+.++.+.
T Consensus 406 ~~~---~~y~r~l~~~~ 419 (439)
T 1mky_A 406 KVK---NPQKIFLRKLI 419 (439)
T ss_dssp TCC---HHHHHHHHHHH
T ss_pred cCC---HHHHHHHHHHH
Confidence 663 34777776553
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.42 E-value=3.4e-05 Score=77.41 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=32.5
Q ss_pred ccceeEEee---CCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEEC
Q 005314 477 FRDLCLAIP---SGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLD 521 (703)
Q Consensus 477 L~~isl~I~---~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~id 521 (703)
|.+.||+++ +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 566666665 8999999999999999999999999988 6666543
No 220
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.42 E-value=4.2e-05 Score=72.49 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG 522 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG 522 (703)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998743 56665
No 221
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.39 E-value=7.8e-05 Score=78.01 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE-CCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL-DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNIAYGKEGNAT 564 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i-dG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI~~g~~~~~t 564 (703)
++.+|||||++|+|||||++.|.|.- +.+ .+.+-. ..++..++++++..- +.+-+.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~--------i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQ--------AIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEE--------EEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCee--------EEEEECcCCC
Confidence 34489999999999999999999863 222 111111 123456788776531 1111122221
Q ss_pred HHHHHHHHHHhcHHHHHHHhhcc---ccchh--cCCCCCCChhHHHHHHHHHHhc--cCCCEEEeeccCcCCCHHH-HHH
Q 005314 565 EAEVLAAAELANAHQFISSLKQG---YDTIV--GERGIQLSGGQKQRVAIARAMV--KAPKILLLDEATSALDAES-ERV 636 (703)
Q Consensus 565 ~~ei~~A~~~a~l~~~I~~Lp~G---~dT~v--Ge~G~~LSGGQkQRiaIARAll--k~p~ILlLDEaTSaLD~~s-e~~ 636 (703)
. +-..... .++....... .|..+ -+. ..+|+|++ .+++++. +.|.|+++ +-+|... ...
T Consensus 68 ~-~~~~~l~----~~~~~~~~~~l~~~D~vl~Vvd~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 68 M-EEKRAIN----RLMNKAASSSIGDVELVIFVVEG-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp H-HHHHHHH----HHHTCCTTSCCCCEEEEEEEEET-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred c-cchhhHH----HHHHHHHHHHHhcCCEEEEEEeC-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 0 1111110 0111111111 12211 122 23999886 5677776 67889998 5777765 455
Q ss_pred HHHHHHHHcC--C--ceEEEEccCchHHh
Q 005314 637 IQDALERVMV--G--RTTVVIAHRLSTIR 661 (703)
Q Consensus 637 v~~~l~~~~~--~--rT~IvIaHrlsti~ 661 (703)
+.+.+.++.+ + .++.+.||.-.-+.
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 6666655543 2 24445567665443
No 222
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.39 E-value=2e-05 Score=83.98 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=47.0
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ 526 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~ 526 (703)
.+++++++.+++|.+++|+|++|+||||+++.|++.+.+..|+|.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 5789999999999999999999999999999999999888888888666654
No 223
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.38 E-value=0.00015 Score=76.37 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYDPD 514 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~p~ 514 (703)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45689999999999999999998866443
No 224
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.37 E-value=0.00011 Score=77.28 Aligned_cols=35 Identities=9% Similarity=0.142 Sum_probs=29.5
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcC
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
+.|+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45777776699999999999999999999866553
No 225
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.34 E-value=2.9e-05 Score=76.24 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=42.9
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCC-CCCeE----------EECCeeCCCCCHHHHhcceEEEccCCCCCcccH
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDP-DTGHI----------TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTV 551 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p-~~G~I----------~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTI 551 (703)
...+|..++|+|+|||||||+++.|...++. ..+.| .+||.+..-++.+.+++.+ .|+.+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 3568999999999999999999999877632 11111 1356555556666665432 33444444443
Q ss_pred HHH
Q 005314 552 RVN 554 (703)
Q Consensus 552 reN 554 (703)
..|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 333
No 226
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.30 E-value=0.00013 Score=71.12 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.4
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCCCCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFYDPD 514 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y~p~ 514 (703)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999998765443
No 227
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.22 E-value=6.9e-05 Score=80.14 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=37.4
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQK 527 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~ 527 (703)
+++.+|+|+|++|||||||++.|.|.+.|.+|+|.|.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4677999999999999999999999999999999988877654
No 228
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=0.00052 Score=70.53 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.8
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++++..+.|.||+|+||||+++.+.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4678889999999999999999998754
No 229
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.20 E-value=1.3e-05 Score=77.96 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=39.7
Q ss_pred EEEEEcCCCCChHHHHHhHcC------CCCCCCCeEEECCe--eCCCCC--------HHHHhcceEEEccCCCCCcccHH
Q 005314 489 MVALVGESGSGKSTVISLLQR------FYDPDTGHITLDGV--EIQKLQ--------LKWLRQQMGLVSQEPVLFNDTVR 552 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g------~y~p~~G~I~idG~--di~~~~--------~~~lR~~i~~V~Qe~~LF~gTIr 552 (703)
.|+|+|++||||||+.++|.. +.+|..|...++.. +-...+ ...+++....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999988 34454443322211 100000 00123334566777788888888
Q ss_pred HHHhcC
Q 005314 553 VNIAYG 558 (703)
Q Consensus 553 eNI~~g 558 (703)
+|+.|.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 888764
No 230
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.19 E-value=0.00019 Score=68.11 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999864
No 231
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.19 E-value=0.00016 Score=69.82 Aligned_cols=48 Identities=19% Similarity=0.446 Sum_probs=27.1
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcC----CCCCC----CCeEEECCe
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQR----FYDPD----TGHITLDGV 523 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g----~y~p~----~G~I~idG~ 523 (703)
.+++++++..++. +++++|++|+|||||++.+.+ -|.|+ .+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 3688999998877 889999999999999999886 23333 455556653
No 232
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.16 E-value=0.00064 Score=70.88 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=27.6
Q ss_pred eEEeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 481 CLAIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 481 sl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++.+++++.+.|.||+|+||||+++.|.+..
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3457899999999999999999999999865
No 233
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.16 E-value=0.0015 Score=69.85 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=26.9
Q ss_pred ccccceeEE---eeCCCEEEEEcCCCCChHHHHHhHcC
Q 005314 475 QIFRDLCLA---IPSGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 475 ~vL~~isl~---I~~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
+.|+.+ |. +++|+.+.|.|++|||||||..-++.
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345554 33 88999999999999999999865554
No 234
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.15 E-value=0.0002 Score=71.16 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYD 512 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~ 512 (703)
++..+.|+||+|+||||+++.+.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999887654
No 235
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.06 E-value=0.0011 Score=68.76 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I 518 (703)
...+.|+||+|+||||+++.|.+...+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35799999999999999999999887766644
No 236
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.02 E-value=0.00023 Score=70.15 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=33.3
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTI 660 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti 660 (703)
.+|.++++||+-. +|.+....+.+.+++...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999877 78877777777776554456777788876543
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.98 E-value=0.00031 Score=67.59 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=26.7
Q ss_pred ceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC
Q 005314 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 479 ~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999876
No 238
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.97 E-value=0.00017 Score=76.50 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=32.4
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchH
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLST 659 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlst 659 (703)
+++|+++|| .-.++.+....+.+.+++...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 5678888888888888776555556777776653
No 239
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.84 E-value=0.00061 Score=63.40 Aligned_cols=30 Identities=27% Similarity=0.598 Sum_probs=23.9
Q ss_pred cceeEEeeCCCEEEEEcCCCCChHHHHHhHc
Q 005314 478 RDLCLAIPSGKMVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 478 ~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~ 508 (703)
++..+.+.+| ..+|+||+||||||++..|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445555554 89999999999999998876
No 240
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.82 E-value=2e-05 Score=84.84 Aligned_cols=86 Identities=12% Similarity=0.060 Sum_probs=64.7
Q ss_pred CCChhHHHHHHHHHHhc-cCCCEEEeec---cC------cCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCE
Q 005314 598 QLSGGQKQRVAIARAMV-KAPKILLLDE---AT------SALDAESERVIQDALERVMV--GRTTVVIAHRLSTIRDADL 665 (703)
Q Consensus 598 ~LSGGQkQRiaIARAll-k~p~ILlLDE---aT------SaLD~~se~~v~~~l~~~~~--~rT~IvIaHrlsti~~aD~ 665 (703)
.+|+|++||..+++++. .+|++++||| |+ +++|+.....+.+.|.++.+ +.|+|+++|--..-+-+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45678888999999885 5999999999 54 68999999999999977654 8899999987545566888
Q ss_pred EEEEeCCEEEEecChhHHhc
Q 005314 666 IAVVKNGVIAEKGKHETLVH 685 (703)
Q Consensus 666 I~vl~~G~Ive~Gth~eLl~ 685 (703)
+.++++ +++.|+-+||.+
T Consensus 338 i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHH--HhcccchhHhhc
Confidence 877765 566777777754
No 241
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.81 E-value=0.00012 Score=78.56 Aligned_cols=58 Identities=24% Similarity=0.240 Sum_probs=36.8
Q ss_pred CCcEEEEEEEEEcCCCCCcccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC
Q 005314 456 KGDIEFQHITFKYPARPDVQIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG 522 (703)
Q Consensus 456 ~~~I~~~~vsF~Y~~~~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG 522 (703)
.+-|.|+|++..|. ...++++++|+| +|||++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 46789999988886 346889999977 99999999999999999887666656554433
No 242
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.80 E-value=0.00028 Score=71.68 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=34.6
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQ 526 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~ 526 (703)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 566788999999999999999999998774 367888885543
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.78 E-value=0.00036 Score=67.07 Aligned_cols=40 Identities=35% Similarity=0.541 Sum_probs=33.9
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE-EECC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI-TLDG 522 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I-~idG 522 (703)
..++|..+.|+|++||||||+.+.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345899999999999999999999999988877776 4554
No 244
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.77 E-value=0.00029 Score=68.70 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=28.2
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCee
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVE 524 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~d 524 (703)
...++|+|++||||||+.+.|.+.+ |.+.+|+-+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 5689999999999999999998876 566666543
No 245
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.73 E-value=0.0006 Score=73.68 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=35.2
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCC-----------CCCCCCeEEECCe
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRF-----------YDPDTGHITLDGV 523 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~-----------y~p~~G~I~idG~ 523 (703)
.++.|.+++|||++|+|||||++.|.|. .+|+.|.|.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 7889999988764
No 246
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.72 E-value=0.0017 Score=69.17 Aligned_cols=40 Identities=28% Similarity=0.535 Sum_probs=30.8
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCee
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVE 524 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~d 524 (703)
.+|..+.|.||+|+||||+++.+.+........+.+++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4678899999999999999999998775444455555433
No 247
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.71 E-value=0.0047 Score=56.77 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.0
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPD 514 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~ 514 (703)
+.+.-+.|.||+|+|||++++.|.......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 466779999999999999999998765443
No 248
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.71 E-value=0.0011 Score=61.98 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++|+|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 249
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.69 E-value=0.0016 Score=72.00 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHhccCCCEEEeecc-CcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh
Q 005314 601 GGQKQRVAIARAMVKAPKILLLDEA-TSALDAESERVIQDALERVMVGRTTVVIAHRLSTIR 661 (703)
Q Consensus 601 GGQkQRiaIARAllk~p~ILlLDEa-TSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~ 661 (703)
+.|++-...++..+++++++|+... +..+.... ..+.+.+.+ .++.+|+|.+......
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC----
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccchh
Confidence 3588888899999999997776544 44455544 455555544 4788999988877553
No 250
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.65 E-value=0.00065 Score=73.14 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=45.0
Q ss_pred HHHHHHHhccCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEE
Q 005314 606 RVAIARAMVKAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLSTIRDADLIAV 668 (703)
Q Consensus 606 RiaIARAllk~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlsti~~aD~I~v 668 (703)
+.+|+++|..+|+++++|||| |.++ +..+++....|.+++.++|..+....+||++.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAAETGHLVFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHHTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHHhcCCEEEEEECcchHHHHHHHHHH
Confidence 569999999999999999999 7665 34455555568999999999886666777643
No 251
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.65 E-value=0.00082 Score=63.98 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+++|+|++|+|||||++.|.+-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999984
No 252
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.65 E-value=1.3 Score=50.14 Aligned_cols=178 Identities=11% Similarity=0.001 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHHHH
Q 005314 182 MYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFE----KVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGDAL 257 (703)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~----~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~~~ 257 (703)
++++.++...+..++..+...++..+++.++-+.+.+ ..-+.+.+..- ..+.+-+..=.+.+...+...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~------~r~~~D~~~i~~~~~~~~~~~~ 145 (587)
T 3qf4_A 72 VALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLI------TRLTNDVTQLQNLVMMLLRIVV 145 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHH------HHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555566666666666666666555543 23344444332 1122212111122223333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCch
Q 005314 258 GLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFCAE 337 (703)
Q Consensus 258 ~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~~e 337 (703)
..++..+..+++.+.+.+.+.+.+.+++.+.+++.........+..++..+...+.... .......+.-+|.-..-..+
T Consensus 146 ~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~l~gi~~Ik~~~~e~~~ 224 (587)
T 3qf4_A 146 RAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRV-VRENLLGVRVVRAFRREEYE 224 (587)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHhcchHHH
Confidence 44444444454544444444443333333333334444444444444444333333333 33333344444444333322
Q ss_pred -HHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 005314 338 -EKVMELYQKKCGGPSKKGIKQGLIGGVAF 366 (703)
Q Consensus 338 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (703)
+++.+..++..+...+..........+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (587)
T 3qf4_A 225 NENFRKANESLRRSIISAFSLIVFALPLFI 254 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333333334444444444443333
No 253
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.64 E-value=0.008 Score=65.80 Aligned_cols=35 Identities=26% Similarity=0.522 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEE
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYDPDTGHITL 520 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~i 520 (703)
++..++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999999888877665445544
No 254
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.63 E-value=0.0023 Score=70.54 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=29.8
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+-|+.+.--+++|+.+.|.|++|+||||++.-++.-.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3466666568999999999999999999986665543
No 255
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.59 E-value=0.0067 Score=61.09 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++...+.|.||+|+||||+++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455678999999999999999998744
No 256
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.59 E-value=0.00059 Score=65.31 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCCCC---CCeEEECCee
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYDPD---TGHITLDGVE 524 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~p~---~G~I~idG~d 524 (703)
-..++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999876543 3777777654
No 257
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.59 E-value=0.00087 Score=70.49 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.4
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHc
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~ 508 (703)
-+++|+.+.|.|++|||||||+.-++
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999999986555
No 258
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.52 E-value=0.0016 Score=69.37 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
..+..+.|.||+|+||||+++.+.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999988765
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.48 E-value=0.0013 Score=62.71 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDPD 514 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p~ 514 (703)
+++|||++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 69999999999999999999975443
No 260
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.47 E-value=1.7 Score=49.19 Aligned_cols=32 Identities=3% Similarity=-0.008 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 190 CLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVI 221 (703)
Q Consensus 190 ~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll 221 (703)
..++..+-.+...+...++..++...+-.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 105 (582)
T 3b5x_A 74 LMFVRGLSGFASSYCLSWVSGNVVMQMRRRLF 105 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555666666666666665554
No 261
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.47 E-value=1.1 Score=50.99 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=45.4
Q ss_pred hhHHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh--hhHHHHHHHHHHHHHHHHHHHHHHH
Q 005314 121 VPLCRLASLNKPEIPALLLGSIAAGVLGVMLPILGILLSGAIKSFFEPADELR--KDTDFWALMYLFLAIACLLAHPLRS 198 (703)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (703)
.....+.++.+..++. ...++.+++..++..+..+....++..+++ ... .....+ ..++++.++..++..+-.
T Consensus 20 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~id---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 94 (598)
T 3qf4_B 20 NPTATLRRLLGYLRPH-TFTLIMVFVFVTVSSILGVLSPYLIGKTID---VVFVPRRFDLL-PRYMLILGTIYALTSLLF 94 (598)
T ss_dssp CHHHHHHHHGGGTGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTTTCGGGH-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHccCCHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4333333343333343 334445555555555555555444444331 111 112222 223333344445555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005314 199 YFFAVAGCKLIKRIRSMCFEKVI 221 (703)
Q Consensus 199 ~~~~~~g~~~~~~lr~~~~~~ll 221 (703)
++..+...++..++...+-.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~lr~~l~ 117 (598)
T 3qf4_B 95 WLQGKIMLTLSQDVVFRLRKELF 117 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777777666663
No 262
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.44 E-value=0.00085 Score=64.92 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=49.1
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC-------------CCCCCeEEECCeeCCCCCHHHHhcceEEEccCCCCCcccHHHHH
Q 005314 489 MVALVGESGSGKSTVISLLQRFY-------------DPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTVRVNI 555 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y-------------~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~LF~gTIreNI 555 (703)
.|.|+||||||||||++-|+.-+ +|-.|+ +||+|.--++.+.+.+.+ .++-+|-.+.+..|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~- 76 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN- 76 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHH---HcCCEEEEEEEcCc-
Confidence 37899999999999998876332 456677 489888888887776643 34445555554444
Q ss_pred hcCCCCCCCHHHHHHHH
Q 005314 556 AYGKEGNATEAEVLAAA 572 (703)
Q Consensus 556 ~~g~~~~~t~~ei~~A~ 572 (703)
.|| .+.+++.+++
T Consensus 77 ~YG----t~~~~v~~~l 89 (186)
T 1ex7_A 77 YYG----STVASVKQVS 89 (186)
T ss_dssp EEE----EEHHHHHHHH
T ss_pred eee----eecceeeehh
Confidence 455 2345555544
No 263
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.42 E-value=0.0058 Score=65.22 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++...+.|.||+|+||||+++.+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 567889999999999999999998754
No 264
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.42 E-value=0.0065 Score=61.26 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhc---cCCCEEEeeccCcCCCHHHHHHHHHHHHHHc----CCceEEEEccCchH
Q 005314 601 GGQKQRVAIARAMV---KAPKILLLDEATSALDAESERVIQDALERVM----VGRTTVVIAHRLST 659 (703)
Q Consensus 601 GGQkQRiaIARAll---k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~----~~rT~IvIaHrlst 659 (703)
.|++.+-.+.|+++ ++|+++|+--..+.++.+. ..+.+.+.+.. .++++|+++|....
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 34555566777774 8888776544334565443 44445554432 26789999997543
No 265
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.39 E-value=0.0013 Score=63.90 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 266
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.39 E-value=0.0026 Score=60.82 Aligned_cols=36 Identities=36% Similarity=0.599 Sum_probs=28.7
Q ss_pred EEEEEcCCCCChHHHHH-hHcCC----CCCCCC----eEEECCee
Q 005314 489 MVALVGESGSGKSTVIS-LLQRF----YDPDTG----HITLDGVE 524 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~-lL~g~----y~p~~G----~I~idG~d 524 (703)
+++|+|++|+|||||++ ++.+- |.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 79999999999999995 55554 678877 67777754
No 267
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.30 E-value=0.018 Score=59.55 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.6
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++..+.|+||+|+||||+++.+...+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999998777655
No 268
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.28 E-value=0.00076 Score=79.95 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.0
Q ss_pred ceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 479 DLCLAIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 479 ~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
..++.+++++.+.|+||+|+|||||++.|++..
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 456788999999999999999999999999876
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.27 E-value=0.0021 Score=60.93 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYD 512 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~ 512 (703)
.|..+.|+|+|||||||+.+.|..-+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999987653
No 270
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.26 E-value=0.00064 Score=72.14 Aligned_cols=37 Identities=35% Similarity=0.406 Sum_probs=33.6
Q ss_pred ccccceeEEeeCCCE--EEEEcCCCCChHHHHHhHcCCC
Q 005314 475 QIFRDLCLAIPSGKM--VALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 475 ~vL~~isl~I~~G~~--vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999999 9999999999999999888753
No 271
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.22 E-value=0.0017 Score=61.92 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.3
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998544
No 272
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.14 E-value=0.0029 Score=61.92 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=23.3
Q ss_pred cceeEEeeCCCEEEEEcCCCCChHHHHHhHc
Q 005314 478 RDLCLAIPSGKMVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 478 ~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~ 508 (703)
++.++.+.+ ..++|+|||||||||++..|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344555555 489999999999999998764
No 273
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.12 E-value=0.00054 Score=67.07 Aligned_cols=89 Identities=22% Similarity=0.354 Sum_probs=53.5
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEccCCC----CCcccHHHHHh--cCC-CC
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQEPV----LFNDTVRVNIA--YGK-EG 561 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qe~~----LF~gTIreNI~--~g~-~~ 561 (703)
+|+|+|++||||||+++.|.+.+.+....|. ++. +|. ++..++++.+. ++. ..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-------------------~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~ 61 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-------------------TLA-FPRYGQSVAADIAAEALHGEHGDLAS 61 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-------------------EEE-SSEEEEEEEEEEHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-------------------EEe-ecCCCCcchhhHHHHHHcccccccCC
Confidence 6899999999999999999998865433332 111 121 12445565542 110 01
Q ss_pred CCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCC
Q 005314 562 NATEAEVLAAAELANAHQFISSLKQGYDTIVGERGI 597 (703)
Q Consensus 562 ~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 597 (703)
+...+.+..++......+.|..++.+.++.|.++..
T Consensus 62 ~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~~~ 97 (214)
T 1gtv_A 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYV 97 (214)
T ss_dssp EHHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEEEE
T ss_pred CHhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECCCc
Confidence 122234444444444477788887777888888664
No 274
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.09 E-value=0.018 Score=60.52 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.7
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.+|..-+.|.||+|+|||||++.+.+..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4567889999999999999999998765
No 275
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.08 E-value=2.6 Score=47.57 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005314 188 IACLLAHPLRSYFFAVAGCKLIKRIRSMCFEKVIY 222 (703)
Q Consensus 188 ~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~~ll~ 222 (703)
++..++..+-.+...+...++..++...+-.++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 106 (582)
T 3b60_A 72 IGLMILRGITSYISSYCISWVSGKVVMTMRRRLFG 106 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666677777777777666644
No 276
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.07 E-value=0.0023 Score=69.20 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=44.3
Q ss_pred cCCCEEEeeccCcCCC---HHHHHHHHHHHHHHcC-CceEEEEccCchHH-------------hhcCEEEEEeCC
Q 005314 615 KAPKILLLDEATSALD---AESERVIQDALERVMV-GRTTVVIAHRLSTI-------------RDADLIAVVKNG 672 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD---~~se~~v~~~l~~~~~-~rT~IvIaHrlsti-------------~~aD~I~vl~~G 672 (703)
..|.++++||+=.-++ +.....+.+.+++.++ +..++++||+++.+ .+|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3578999999999995 5566777777777554 77899999999755 457777777654
No 277
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.06 E-value=0.0032 Score=59.87 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCChHHHHHhHcCC----CCCCCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRF----YDPDTG 516 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~----y~p~~G 516 (703)
-+++++|++|+|||||++.+.+- |.|+.|
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 47999999999999999999876 355556
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.06 E-value=0.0027 Score=59.47 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
..++|+|++||||||+.+.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999997654
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.03 E-value=0.0031 Score=60.23 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+|..+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 280
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.02 E-value=0.0076 Score=62.44 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++...+.|.||+|+|||+|++.|++-+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444578889999999999999998765
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.00 E-value=0.0032 Score=60.08 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999997654
No 282
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.00 E-value=0.003 Score=61.14 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.+|..|+|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
No 283
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.96 E-value=0.0021 Score=67.13 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=29.6
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcC
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
..+++..+.+ .|+.++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678888888 799999999999999999987776
No 284
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.95 E-value=0.0063 Score=63.66 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.4
Q ss_pred EEeeCCCEEEEEcCCCCChHHHHHhHcC
Q 005314 482 LAIPSGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 482 l~I~~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
--+++|..+.|.||+|+|||||..-+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999999987763
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.95 E-value=0.0033 Score=65.10 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=28.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG 522 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG 522 (703)
.+|..+.|+|+|||||||+.+.|..-++ .|.+.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999976542 36677776
No 286
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.94 E-value=0.01 Score=57.38 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=29.8
Q ss_pred cCCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q 005314 615 KAPKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLS 658 (703)
Q Consensus 615 k~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrls 658 (703)
.++.++++||+-. ++.+....+.+.++....+..+|+++.+..
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 4688999999754 566666677777776544555666676654
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.90 E-value=0.0032 Score=60.32 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997644
No 288
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.89 E-value=0.0036 Score=61.51 Aligned_cols=32 Identities=41% Similarity=0.520 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG 522 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG 522 (703)
.+..|+|+|++||||||+.+.|..+ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999873 6566654
No 289
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.86 E-value=0.018 Score=61.70 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=22.7
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHc
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~ 508 (703)
-+++|+.+.|.|++|+|||||..-++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIV 95 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHH
Confidence 47999999999999999999985544
No 290
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.82 E-value=0.023 Score=60.47 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.1
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.++..-+.|.||+|+|||||++.+....
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999998764
No 291
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.81 E-value=0.0036 Score=62.56 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.8
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
-++|.+++|+|++||||||+.+.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999999863
No 292
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.80 E-value=0.0069 Score=60.21 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=34.7
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccC-----------chHHhhcCEEEEEe
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHR-----------LSTIRDADLIAVVK 670 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHr-----------lsti~~aD~I~vl~ 670 (703)
+++++++||+-- |+.+.-. +...|.+ .+.++|++.|+ ...+..||.|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999974 6654222 2233333 38899999993 23466899999864
No 293
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.79 E-value=0.0054 Score=65.47 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCChHHHHHhHcC-----------CCCCCCCeEEECC
Q 005314 487 GKMVALVGESGSGKSTVISLLQR-----------FYDPDTGHITLDG 522 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g-----------~y~p~~G~I~idG 522 (703)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46899999999999999999998 4578889888876
No 294
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.79 E-value=0.03 Score=61.00 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=27.6
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDG 522 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG 522 (703)
=++.+.+.|+|++||||||+.+.|..-+ |-+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 4567899999999999999999987644 4455543
No 295
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.79 E-value=0.0043 Score=57.93 Aligned_cols=19 Identities=42% Similarity=0.691 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHhH
Q 005314 489 MVALVGESGSGKSTVISLL 507 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL 507 (703)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 296
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.76 E-value=0.0031 Score=59.99 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998544
No 297
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.69 E-value=0.0047 Score=59.24 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 298
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.67 E-value=0.005 Score=59.92 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++|..|+|+|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999998654
No 299
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.62 E-value=0.0053 Score=59.80 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.2
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.++|..|+|+|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998644
No 300
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.62 E-value=0.016 Score=53.03 Aligned_cols=28 Identities=29% Similarity=0.240 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYD 512 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~ 512 (703)
+.+.-+.|.|++|+|||++++.|.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4566799999999999999999987643
No 301
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.61 E-value=0.0054 Score=59.52 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYDP 513 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~p 513 (703)
+|..|+|.|++||||||+.+.|..-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5779999999999999999999886654
No 302
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.60 E-value=0.034 Score=61.13 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.8
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
..|..-+.|.||+|+|||||++.+.+..
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3577889999999999999999998865
No 303
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.54 E-value=0.037 Score=69.75 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=28.8
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I 518 (703)
-+++|+.+.|.|++|+|||||+.-++.-.....|.+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 389999999999999999999977766544444444
No 304
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.49 E-value=0.0027 Score=61.19 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=25.3
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.++++..|+|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34677899999999999999999998755
No 305
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.45 E-value=0.006 Score=58.85 Aligned_cols=22 Identities=50% Similarity=0.656 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999754
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.43 E-value=0.0061 Score=57.64 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.+.|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998655
No 307
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.42 E-value=0.009 Score=65.73 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=25.9
Q ss_pred cccceeEEeeCCCEEEEEcCCCCChHHHHHhHc
Q 005314 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 476 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~ 508 (703)
-|+.+.--+++|+.+.|.|++|+||||++--++
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia 218 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQA 218 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHH
Confidence 355544358999999999999999999974443
No 308
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.36 E-value=0.0061 Score=57.82 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=18.3
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.++..|.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999997544
No 309
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.36 E-value=0.018 Score=53.73 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=21.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
++.-+|+++|++|+|||||++.+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999998876
No 310
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.31 E-value=0.0078 Score=56.71 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChHHHHHhHcC
Q 005314 488 KMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g 509 (703)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 311
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.28 E-value=0.063 Score=56.19 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
..+.|.||+|+||||+++.+....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 479999999999999999997654
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.26 E-value=0.0081 Score=57.33 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++..|+|+|++||||||+.+.|..-+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999887644
No 313
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.21 E-value=0.032 Score=59.09 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=29.7
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLS 658 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrls 658 (703)
+++++++||+-. |+.++...+.+.+++...+..+|++|++..
T Consensus 119 ~~~vliiDe~~~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGGG-SCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcch-hcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 578999999754 677777777777765444455666777664
No 314
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.20 E-value=0.0067 Score=64.76 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++..+.|.||+|+||||+++.+.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999988654
No 315
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.20 E-value=0.0067 Score=61.48 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+.++|+|++|||||||.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998654
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.18 E-value=0.006 Score=57.91 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=26.8
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCCCCCC---CeEEECC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFYDPDT---GHITLDG 522 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y~p~~---G~I~idG 522 (703)
..++|+|+||||||||+..|.+.+.+.. |.|..|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4799999999999999998888765432 4455444
No 317
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.15 E-value=0.01 Score=58.38 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++|..+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998755
No 318
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.15 E-value=0.0086 Score=57.06 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFYD 512 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~ 512 (703)
.|.|+|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987664
No 319
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.14 E-value=0.013 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999888754
No 320
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.018 Score=53.27 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999876
No 321
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.01 E-value=6.1 Score=44.55 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=8.5
Q ss_pred EEEEEEEEEcCC
Q 005314 459 IEFQHITFKYPA 470 (703)
Q Consensus 459 I~~~~vsF~Y~~ 470 (703)
-.++|+||.-+.
T Consensus 355 ~~l~~isl~i~~ 366 (578)
T 4a82_A 355 PILKDINLSIEK 366 (578)
T ss_dssp CSEEEEEEEECT
T ss_pred cceeeeEEEECC
Confidence 457888888653
No 322
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.96 E-value=0.013 Score=56.71 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.+..|.|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 323
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.95 E-value=0.0072 Score=64.77 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+++|||++|+|||||++.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 324
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.94 E-value=0.042 Score=61.14 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=24.5
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++...+.|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5677889999999999999999997653
No 325
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.94 E-value=0.011 Score=56.56 Aligned_cols=23 Identities=43% Similarity=0.728 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.|+|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 326
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.93 E-value=0.011 Score=58.37 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.6
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.++..+.|+|++||||||+.+.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998654
No 327
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.91 E-value=0.043 Score=56.99 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+...+.|.||+|+||||+++.+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998764
No 328
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.91 E-value=0.012 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 329
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.91 E-value=0.011 Score=55.43 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
..|.|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997644
No 330
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.87 E-value=0.013 Score=54.85 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
-+.++|.|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999997643
No 331
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.86 E-value=0.017 Score=56.04 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 799999999999999987653
No 332
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.86 E-value=0.011 Score=56.18 Aligned_cols=25 Identities=40% Similarity=0.454 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+.+|+|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999997654
No 333
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.85 E-value=0.012 Score=59.68 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+|+++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999874
No 334
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.84 E-value=0.012 Score=57.47 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++|+|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996544
No 335
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.82 E-value=0.0085 Score=62.04 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++-.|+|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999988754
No 336
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.82 E-value=0.011 Score=58.15 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.+..|.|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998655
No 337
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.80 E-value=0.03 Score=52.86 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=21.8
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
++.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34458999999999999999999863
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.78 E-value=0.013 Score=56.68 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
....|+|+|++||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999988654
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.78 E-value=0.014 Score=54.52 Aligned_cols=23 Identities=52% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+|+|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997744
No 340
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.77 E-value=0.026 Score=59.05 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.1
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|..-+.|.||+|+|||++++.+...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 56678999999999999999999765
No 341
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.70 E-value=0.016 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+|+|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 69999999999999999998753
No 342
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.69 E-value=0.014 Score=56.48 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
..++|+|.+||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 369999999999999999998753
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.65 E-value=0.014 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+..|+|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997644
No 344
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.65 E-value=0.014 Score=59.58 Aligned_cols=22 Identities=50% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|||++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988764
No 345
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.65 E-value=0.014 Score=59.61 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFYD 512 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~ 512 (703)
+++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 799999999999999999998753
No 346
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.65 E-value=0.046 Score=64.31 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.+.|+||+|+|||++++.|....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998875
No 347
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.65 E-value=0.016 Score=53.60 Aligned_cols=23 Identities=48% Similarity=0.603 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997643
No 348
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.65 E-value=0.015 Score=56.94 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++|+|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996544
No 349
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.63 E-value=0.015 Score=55.43 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998755
No 350
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.63 E-value=0.013 Score=54.05 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 351
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.61 E-value=0.019 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999998887543
No 352
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.61 E-value=0.015 Score=56.15 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 353
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.57 E-value=0.016 Score=58.21 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++..+.|.|++||||||+.+.|..-|
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 366789999999999999999997654
No 354
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.55 E-value=0.018 Score=53.74 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+++|++|+|||||++.|.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
No 355
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.49 E-value=0.015 Score=53.40 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988764
No 356
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.015 Score=55.36 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.=+++++|++|+|||||++.+.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999988654
No 357
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.44 E-value=0.021 Score=54.30 Aligned_cols=21 Identities=48% Similarity=0.798 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999998876
No 358
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.44 E-value=0.022 Score=52.46 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988874
No 359
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.40 E-value=0.021 Score=54.31 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|+|++|+|||||++.|.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988865
No 360
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.40 E-value=0.018 Score=58.07 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
-.|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999997643
No 361
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.38 E-value=0.016 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988754
No 362
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.38 E-value=0.016 Score=53.25 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998864
No 363
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.38 E-value=0.015 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988653
No 364
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.38 E-value=0.019 Score=58.29 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.4
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
.++..|.|+|++||||||+.+.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999864
No 365
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.37 E-value=0.037 Score=57.65 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=30.7
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCchH
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLST 659 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrlst 659 (703)
+++++++||+-.--..+....+.+.+++...+..+|++|.+...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 78999999996542155556666667665556677788887664
No 366
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.33 E-value=0.018 Score=54.88 Aligned_cols=24 Identities=38% Similarity=0.373 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
--+++++|++|+|||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999864
No 367
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.32 E-value=0.017 Score=53.21 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 368
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.31 E-value=0.017 Score=53.43 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999988874
No 369
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.31 E-value=0.03 Score=53.92 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999988864
No 370
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.31 E-value=0.029 Score=54.54 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=27.5
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCC
Q 005314 475 QIFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 475 ~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
..++...+.+ .|..+.|+||||||||||..-|..-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566666665 6889999999999999998766554
No 371
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.31 E-value=0.087 Score=56.62 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.++..+.|.||+|+|||++++.++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999999997653
No 372
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.29 E-value=0.02 Score=58.58 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+|+|||++|+|||||++.|.|-.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999853
No 373
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.29 E-value=0.023 Score=59.87 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++..+.|+||+|||||||...|+.-+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356789999999999999999998866
No 374
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.26 E-value=0.018 Score=53.16 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999988764
No 375
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.25 E-value=0.016 Score=53.47 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999988875
No 376
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.25 E-value=0.019 Score=54.45 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999988753
No 377
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.25 E-value=0.018 Score=53.75 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998864
No 378
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.25 E-value=0.018 Score=53.87 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+++|++|+|||||++.+.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987765
No 379
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.25 E-value=0.018 Score=59.18 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChHHHHHhHcC
Q 005314 487 GKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
...|+|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 380
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.056 Score=59.05 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.9
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
-++|-.-+.+.||+|||||+|++.+++-.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 46788899999999999999999998754
No 381
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.20 E-value=0.019 Score=54.48 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFYDP 513 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~p 513 (703)
+|+|||++|+|||||++.+.+-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999876543
No 382
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.16 E-value=0.033 Score=53.01 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCChHHHHHhHcC------CCCCCCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQR------FYDPDTG 516 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g------~y~p~~G 516 (703)
.-+|+|+|++|+|||||++.+.+ -|.|+-|
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 34799999999999999999987 3455555
No 383
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.11 E-value=0.021 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999988874
No 384
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.07 E-value=0.023 Score=53.71 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988753
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.07 E-value=0.023 Score=55.80 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+|..|.|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997755
No 386
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.02 E-value=0.027 Score=60.30 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=25.0
Q ss_pred ccceeEEeeCCCEEEEEcCCCCChHHHHHhHc
Q 005314 477 FRDLCLAIPSGKMVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 477 L~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~ 508 (703)
+++..++..+ ..++|+|+|||||||++..|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3566666666 589999999999999997764
No 387
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.02 E-value=0.078 Score=58.63 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=56.4
Q ss_pred chhcCCCCCCChhHHHHHHHHH--Hhcc---------------CCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEE
Q 005314 590 TIVGERGIQLSGGQKQRVAIAR--AMVK---------------APKILLLDEATSALDAESERVIQDALERVMVGRTTVV 652 (703)
Q Consensus 590 T~vGe~G~~LSGGQkQRiaIAR--Allk---------------~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~Iv 652 (703)
+........+||||+|-.-+|. |++. .-.+++|||| |-+|++.-+..++.++++ |-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 4445556789999999533332 2211 1258999999 999999999999999876 666777
Q ss_pred EccCchHHhhcCEEEEEe
Q 005314 653 IAHRLSTIRDADLIAVVK 670 (703)
Q Consensus 653 IaHrlsti~~aD~I~vl~ 670 (703)
+|=. ...+.+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7766 4457799999885
No 388
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.99 E-value=0.021 Score=53.76 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+++|++|+|||||++.|.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 389
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.99 E-value=0.021 Score=53.94 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998875
No 390
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.98 E-value=0.02 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
+.=+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344899999999999999998874
No 391
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.97 E-value=0.025 Score=52.80 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 392
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.97 E-value=0.04 Score=51.63 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHhHc
Q 005314 489 MVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~ 508 (703)
+|+|+|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 79999999999999998887
No 393
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.94 E-value=0.057 Score=51.26 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChHHHHHhHcC-----CCCCCCC
Q 005314 489 MVALVGESGSGKSTVISLLQR-----FYDPDTG 516 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g-----~y~p~~G 516 (703)
+|+|+|++|+|||||++-+.+ -|.|+-|
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~ 55 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE 55 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCC
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc
Confidence 799999999999999977653 3455555
No 394
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.89 E-value=0.023 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999988864
No 395
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.89 E-value=0.024 Score=56.38 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=22.1
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFYD 512 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y~ 512 (703)
..+|..|.|.|++||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999887653
No 396
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.85 E-value=11 Score=42.61 Aligned_cols=185 Identities=14% Similarity=-0.018 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCccccccCCCChhHHHHHHHhHHHHHHHHHHH
Q 005314 180 ALMYLFLAIACLLAHPLRSYFFAVAGCKLIKRIRSMCFE----KVIYMEVSWFDEPGHSSGAIGARLSADSASVRSVVGD 255 (703)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lr~~~~~----~ll~~~~~~f~~~~~~~G~l~~rl~~D~~~v~~~~~~ 255 (703)
++++++.++...+..++..+...++..++..++-..+.+ ..-+.+.+..-+ +-+.++ ..+.. .+...+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~--r~~~d~-~~i~~---~~~~~~~~ 142 (595)
T 2yl4_A 69 SAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELIN--RLSSDT-ALLGR---SVTENLSD 142 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHH--HHHHHH-HHHHH---HTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHH--HHHHHH-HHHHH---HHHHHHHH
Confidence 333333344455555555555555555555555444432 233445443321 111121 12221 12223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC
Q 005314 256 ALGLHVQNIATLFAGVIIAFEANWQLALIVLVLVPLLVLNGYAHMKFLKGFSADSKKMYEEASQVANDAVGSIRTVASFC 335 (703)
Q Consensus 256 ~~~~~~~~~~~~i~~~i~~~~~~~~lalv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~tvk~~~ 335 (703)
.+..++..+..+++.+.+-+.+.+.+.+++.+.+++.........+..++......+... ......+.+.-++.-..-.
T Consensus 143 ~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~l~gi~~ik~~~~e~ 221 (595)
T 2yl4_A 143 GLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQ-LAEERIGNVRTVRAFGKEM 221 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHhCccH
Confidence 344444444445454444454444333333333344444444444444444444333333 3333344455555544433
Q ss_pred ch-HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 005314 336 AE-EKVMELYQKKCGGPSKKGIKQGLIGGVAFGISFF 371 (703)
Q Consensus 336 ~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (703)
.+ +++.+..++..+...+..........+...+..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (595)
T 2yl4_A 222 TEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNL 258 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3344444444444455555555554444444333
No 397
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.83 E-value=0.027 Score=58.52 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|||++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
No 398
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.83 E-value=0.024 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCChHHHHHhHcC
Q 005314 487 GKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
.=+++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999988854
No 399
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.82 E-value=0.024 Score=53.04 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999988864
No 400
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.80 E-value=0.022 Score=53.01 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999998864
No 401
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.78 E-value=0.05 Score=51.06 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988874
No 402
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.74 E-value=0.024 Score=61.16 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.9
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
-++|.+-+.+.||+|||||+|++.+++-.
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 36667779999999999999999998754
No 403
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.74 E-value=0.028 Score=56.68 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCChHHHHHhHcCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
-+|+|||++|+|||||++.|.+-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
No 404
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.72 E-value=0.033 Score=53.13 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|+|++|+|||||++.|.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 405
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.70 E-value=0.026 Score=52.57 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999988753
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.69 E-value=0.028 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997754
No 407
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.69 E-value=0.026 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.532 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999888753
No 408
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.68 E-value=0.046 Score=52.08 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999988864
No 409
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.68 E-value=0.026 Score=53.51 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+++|++|+|||||++.|.+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 799999999999999988864
No 410
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.65 E-value=0.032 Score=54.94 Aligned_cols=29 Identities=34% Similarity=0.414 Sum_probs=25.0
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDP 513 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p 513 (703)
.+|..|.|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999776644
No 411
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.64 E-value=0.022 Score=55.68 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998765
No 412
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.63 E-value=0.034 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCChHHHHHhHcCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
-+|+|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999873
No 413
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.63 E-value=0.041 Score=52.34 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 799999999999999998865
No 414
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.62 E-value=0.027 Score=52.86 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 699999999999999988874
No 415
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.61 E-value=0.33 Score=53.02 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDPD 514 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~ 514 (703)
++...++++|++|+||||+..-|+..+.-.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 355799999999999999998777655433
No 416
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.60 E-value=0.026 Score=55.96 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=25.6
Q ss_pred hccCCCEEEeeccCcC-CC-HHHHHHHHHHHHHHcCCceEEEEcc
Q 005314 613 MVKAPKILLLDEATSA-LD-AESERVIQDALERVMVGRTTVVIAH 655 (703)
Q Consensus 613 llk~p~ILlLDEaTSa-LD-~~se~~v~~~l~~~~~~rT~IvIaH 655 (703)
+.++|+++|+||+-.. .+ ..++...++....+..+.-++..+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3368999999997642 33 2233344444433445666777776
No 417
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.59 E-value=0.027 Score=55.66 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=25.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDP 513 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p 513 (703)
++|..|.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999887654
No 418
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.59 E-value=0.21 Score=54.34 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.4
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
-++|..-+.+.||+|||||++++.+++-.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46777889999999999999999998754
No 419
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.58 E-value=0.032 Score=55.04 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
++.|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 420
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.57 E-value=0.032 Score=58.11 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCChHHHHHhHcCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
-+|||+|++|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999885
No 421
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.57 E-value=0.034 Score=53.32 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999888753
No 422
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.56 E-value=0.025 Score=57.35 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.3
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.+++..|+|.|..||||||+++.|...+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3678899999999999999999998876
No 423
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.54 E-value=0.064 Score=55.36 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=28.2
Q ss_pred CCCEEEeeccCcCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q 005314 616 APKILLLDEATSALDAESERVIQDALERVMVGRTTVVIAHRLS 658 (703)
Q Consensus 616 ~p~ILlLDEaTSaLD~~se~~v~~~l~~~~~~rT~IvIaHrls 658 (703)
+++++++||+-. ++.+....+.+.+++...+..+|++|.+..
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 488999999754 455555566677766444556666777654
No 424
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.54 E-value=0.038 Score=54.88 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.+..+.|+|+.||||||+.+.|..-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 425
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.53 E-value=0.035 Score=54.64 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYD 512 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~ 512 (703)
+|.+|.|.|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999887664
No 426
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.53 E-value=0.032 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
=+|+++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999988653
No 427
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.50 E-value=0.035 Score=55.59 Aligned_cols=28 Identities=29% Similarity=0.499 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFYDP 513 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y~p 513 (703)
+|..|+|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999876643
No 428
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.48 E-value=0.019 Score=56.11 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.-+|+|+|++|+|||||++.|.+-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999998853
No 429
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.46 E-value=0.03 Score=53.18 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999988864
No 430
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.45 E-value=0.028 Score=52.94 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+++|++|+|||||++.+.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999988864
No 431
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.42 E-value=0.037 Score=54.91 Aligned_cols=28 Identities=32% Similarity=0.592 Sum_probs=24.5
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYD 512 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~ 512 (703)
.+|..|+|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999876553
No 432
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.42 E-value=0.031 Score=53.73 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999888653
No 433
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.41 E-value=0.017 Score=63.58 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=31.8
Q ss_pred cccceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCCCCCCCeE
Q 005314 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQRFYDPDTGHI 518 (703)
Q Consensus 476 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I 518 (703)
+++.+ +.+-+|++++|+|+||+|||||++.|.+-.....|.|
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 34444 5677999999999999999999998886554333333
No 434
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.41 E-value=0.037 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHhHcCCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFYD 512 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y~ 512 (703)
++++||++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 799999999999999999888543
No 435
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.41 E-value=0.034 Score=56.85 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+|+++|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 436
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.41 E-value=0.03 Score=53.64 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988864
No 437
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.37 E-value=0.042 Score=53.33 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999988764
No 438
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.35 E-value=0.032 Score=52.93 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999988864
No 439
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.32 E-value=0.037 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999988753
No 440
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.32 E-value=0.052 Score=51.47 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=24.4
Q ss_pred cccceeEEeeCCCEEEEEcCCCCChHHHHHhHc
Q 005314 476 IFRDLCLAIPSGKMVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 476 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~ 508 (703)
.++...+. -.|.-+.|.|+||+||||+...|.
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHH
Confidence 44554444 458899999999999999986554
No 441
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.31 E-value=0.032 Score=52.97 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999998875
No 442
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.30 E-value=0.04 Score=55.88 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++++|++|+|||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999843
No 443
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.26 E-value=0.039 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCChHHHHHhHcC
Q 005314 487 GKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
.=+|+++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999998884
No 444
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.25 E-value=0.04 Score=57.41 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+..++|+||||||||||..-|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4579999999999999998887654
No 445
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.24 E-value=0.12 Score=66.20 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=30.8
Q ss_pred ccccccee--EEeeCCCEEEEEcCCCCChHHHHHhHc
Q 005314 474 VQIFRDLC--LAIPSGKMVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 474 ~~vL~~is--l~I~~G~~vaiVG~SGsGKSTL~~lL~ 508 (703)
.+.|+++. .-+++|+.+.++|++|||||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 46788887 579999999999999999999997765
No 446
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.24 E-value=0.033 Score=54.17 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++++|++|+|||||++.|.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999998887643
No 447
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.23 E-value=0.034 Score=52.17 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHhHc
Q 005314 489 MVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~ 508 (703)
+++++|++|+|||||++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998775
No 448
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.23 E-value=0.034 Score=53.32 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|||++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999875
No 449
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.22 E-value=0.031 Score=53.71 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCChHHHHHhHcCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
=+|+|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 37999999999999999988763
No 450
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.19 E-value=0.039 Score=58.21 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFYD 512 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y~ 512 (703)
..++|+||||||||||.+.|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999988887653
No 451
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.17 E-value=0.035 Score=52.28 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+++|++|+|||||++.+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999999886
No 452
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.13 E-value=0.033 Score=52.99 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|+|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6999999999999999988753
No 453
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.10 E-value=0.036 Score=52.70 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++|+|++|+|||||++.+.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999988875
No 454
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.10 E-value=0.046 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999988764
No 455
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.08 E-value=0.041 Score=55.71 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+++|++|+|||||++.|.+-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
No 456
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.07 E-value=0.043 Score=53.42 Aligned_cols=21 Identities=33% Similarity=0.718 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999998876
No 457
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.07 E-value=0.67 Score=51.50 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+...|+|||+.|+||||++.-|+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999998888554
No 458
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.06 E-value=0.042 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+|..|+|.|..||||||+++.|...+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998766
No 459
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.06 E-value=0.041 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+++++|++|+|||||++.|.+--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998743
No 460
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.04 E-value=0.051 Score=50.96 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.0
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
..+..+.|+|++|+||||+++.+...+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445789999999999999998887764
No 461
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.03 E-value=0.047 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
.=+|+++|++|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999888753
No 462
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.01 E-value=0.033 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=9.5
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988764
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.98 E-value=0.042 Score=56.61 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChHHHHHhHcC
Q 005314 488 KMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g 509 (703)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 464
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.98 E-value=0.048 Score=55.46 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCCCCCCCe
Q 005314 488 KMVALVGESGSGKSTVISLLQRFYDPDTGH 517 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~ 517 (703)
.++++||.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876544443
No 465
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.98 E-value=0.036 Score=53.58 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=23.0
Q ss_pred ccceeEEeeCCCEEEEEcCCCCChHHHHHhHcC
Q 005314 477 FRDLCLAIPSGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 477 L~~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
..|+.|.-..--+|+++|++|+|||||++.+.+
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 344444433344899999999999999998876
No 466
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.97 E-value=0.042 Score=56.94 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.|+|||+.|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999864
No 467
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.97 E-value=0.047 Score=52.17 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.4
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
++.=+|+++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999998864
No 468
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.96 E-value=0.031 Score=54.37 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.|.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998884
No 469
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.95 E-value=0.039 Score=52.53 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999988753
No 470
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.92 E-value=0.04 Score=52.32 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999998874
No 471
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.92 E-value=0.04 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCChHHHHHhHcC
Q 005314 488 KMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g 509 (703)
=+|+++|++|+|||||++.+.+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999988865
No 472
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.91 E-value=0.046 Score=51.11 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCChHHHHHhHcC
Q 005314 487 GKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
-=+++++|++|+|||||++.+.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999988874
No 473
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.04 Score=52.14 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+|+|++|+|||||++.+.+
T Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999998865
No 474
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.88 E-value=0.04 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCChHHHHHhHcC
Q 005314 488 KMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g 509 (703)
=+|+|+|++|+|||||++.+.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999988873
No 475
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.84 E-value=0.041 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
+.=+|+|+|++|+|||||++.+.+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 344899999999999999988864
No 476
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.84 E-value=0.15 Score=52.81 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=24.7
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcCCCC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQRFYD 512 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g~y~ 512 (703)
.+.+..+.|.|++|+|||++++.|.....
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 35677899999999999999999987654
No 477
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.75 E-value=0.045 Score=56.19 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHhHcCCC
Q 005314 489 MVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
+|+|||.+|+|||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999998864
No 478
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.67 E-value=0.034 Score=51.94 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++-+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988764
No 479
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.64 E-value=0.042 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChHHHHHhHcCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
-.++|+|++|+|||||++-|.+-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999887764
No 480
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.61 E-value=0.045 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
+.=+++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344799999999999999998854
No 481
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.60 E-value=0.018 Score=63.29 Aligned_cols=120 Identities=23% Similarity=0.402 Sum_probs=65.5
Q ss_pred cceeEEeeCCCE--EEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeCCCCCHHHHhcceEEEcc------CCCCCcc
Q 005314 478 RDLCLAIPSGKM--VALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEIQKLQLKWLRQQMGLVSQ------EPVLFND 549 (703)
Q Consensus 478 ~~isl~I~~G~~--vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q------e~~LF~g 549 (703)
+.+.-.|+.|+. +.|.||+|+||||+++.|.+.....-..+... ....+++|..+....+ ...||=+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~-----~~~~~~ir~~~~~a~~~~~~~~~~iLfID 113 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAV-----TSGVKEIREAIERARQNRNAGRRTILFVD 113 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT-----TCCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec-----cCCHHHHHHHHHHHHHhhhcCCCcEEEEe
Confidence 445555666664 99999999999999999999886554433322 2233344432211110 0111110
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHHhhccccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEeeccC
Q 005314 550 TVRVNIAYGKEGNATEAEVLAAAELANAHQFISSLKQGYDTIVGERGIQLSGGQKQRVAIARAMVKAPKILLLDEAT 626 (703)
Q Consensus 550 TIreNI~~g~~~~~t~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQkQRiaIARAllk~p~ILlLDEaT 626 (703)
+| ...+.+ ....++..+.+|--+.||....+.+. .+-.+|+++..++.|+.++
T Consensus 114 ----EI-----~~l~~~---------~q~~LL~~le~~~v~lI~att~n~~~------~l~~aL~sR~~v~~l~~l~ 166 (447)
T 3pvs_A 114 ----EV-----HRFNKS---------QQDAFLPHIEDGTITFIGATTENPSF------ELNSALLSRARVYLLKSLS 166 (447)
T ss_dssp ----TT-----TCC---------------CCHHHHHTTSCEEEEEESSCGGG------SSCHHHHTTEEEEECCCCC
T ss_pred ----Ch-----hhhCHH---------HHHHHHHHHhcCceEEEecCCCCccc------ccCHHHhCceeEEeeCCcC
Confidence 00 001111 11223444455767777765555542 4567888888888888775
No 482
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.60 E-value=0.059 Score=52.80 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|||++|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999998864
No 483
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.55 E-value=0.044 Score=52.66 Aligned_cols=21 Identities=19% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+|+++|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998875
No 484
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.55 E-value=0.055 Score=56.70 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
..+.|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998765
No 485
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.44 E-value=0.061 Score=55.94 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
++-+++++|++|+|||||++.+.+-
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999987664
No 486
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.43 E-value=0.28 Score=61.93 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=26.0
Q ss_pred ccccceeE--EeeCCCEEEEEcCCCCChHHHHHhHc
Q 005314 475 QIFRDLCL--AIPSGKMVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 475 ~vL~~isl--~I~~G~~vaiVG~SGsGKSTL~~lL~ 508 (703)
+-|+.+-= =+++|..+.|.|++|+|||||..-++
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a 404 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 404 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34555421 38999999999999999999975443
No 487
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.38 E-value=0.067 Score=51.77 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCChHHHHHhHcC
Q 005314 488 KMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g 509 (703)
-+++++|++|+|||||++.+.+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3799999999999999988875
No 488
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.32 E-value=0.06 Score=51.96 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.0
Q ss_pred CCEEEEEcCCCCChHHHHHhHc
Q 005314 487 GKMVALVGESGSGKSTVISLLQ 508 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~ 508 (703)
.=+|+++|++|+|||||++.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 3479999999999999996665
No 489
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.31 E-value=0.056 Score=53.37 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=25.4
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 483 AIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 483 ~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
..++.+.|.|+||.||||+|..+.|..-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45677889999999999999999998766
No 490
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.31 E-value=0.098 Score=62.34 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=26.6
Q ss_pred CEEEEEcCCCCChHHHHHhHcCCCCCCCC-eEEECC
Q 005314 488 KMVALVGESGSGKSTVISLLQRFYDPDTG-HITLDG 522 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~y~p~~G-~I~idG 522 (703)
..+.|+||+|+|||++++.|........+ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47899999999999999999987754333 244443
No 491
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.25 E-value=0.066 Score=55.65 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
...+.|+||||||||||..-|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999998887665
No 492
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.22 E-value=0.053 Score=51.56 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhHcC
Q 005314 489 MVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999988874
No 493
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.05 E-value=0.093 Score=58.80 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 486 SGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 486 ~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
....|.+||.+||||||+.+.|.+.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998754
No 494
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.98 E-value=0.037 Score=53.06 Aligned_cols=22 Identities=45% Similarity=0.617 Sum_probs=4.6
Q ss_pred EEEEEcCCCCChHHHHHhHcCC
Q 005314 489 MVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 489 ~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
+|+|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999887653
No 495
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.97 E-value=0.39 Score=61.50 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=23.1
Q ss_pred eeCCCEEEEEcCCCCChHHHHHhHcC
Q 005314 484 IPSGKMVALVGESGSGKSTVISLLQR 509 (703)
Q Consensus 484 I~~G~~vaiVG~SGsGKSTL~~lL~g 509 (703)
+++|+.+.|.||+|+|||||+.-++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999755544
No 496
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.94 E-value=0.067 Score=57.60 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
...++|+||||||||||..-|+.-+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 4578999999999999998877554
No 497
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.93 E-value=0.064 Score=50.18 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHhHcCCCCC
Q 005314 485 PSGKMVALVGESGSGKSTVISLLQRFYDP 513 (703)
Q Consensus 485 ~~G~~vaiVG~SGsGKSTL~~lL~g~y~p 513 (703)
..+..+.|+||+|+||||+++.+......
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44668899999999999999888776543
No 498
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.90 E-value=0.025 Score=61.88 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCCChHHHHHhHcCCCCCCCCeEEECCeeC
Q 005314 487 GKMVALVGESGSGKSTVISLLQRFYDPDTGHITLDGVEI 525 (703)
Q Consensus 487 G~~vaiVG~SGsGKSTL~~lL~g~y~p~~G~I~idG~di 525 (703)
...++++|++|+||||++.-|.+.+.....+|.+-..|.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 358999999999999999999988765555566544343
No 499
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.83 E-value=0.072 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCChHHHHHhHcCC
Q 005314 488 KMVALVGESGSGKSTVISLLQRF 510 (703)
Q Consensus 488 ~~vaiVG~SGsGKSTL~~lL~g~ 510 (703)
-+++|+|.+|+|||||++-+++-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999777654
No 500
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.77 E-value=0.033 Score=59.55 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=37.9
Q ss_pred cEEEEEEEEEcCCCCCccccc-----------ceeEEeeCCCEEEEEcCCCCChHHHHHhHcCCC
Q 005314 458 DIEFQHITFKYPARPDVQIFR-----------DLCLAIPSGKMVALVGESGSGKSTVISLLQRFY 511 (703)
Q Consensus 458 ~I~~~~vsF~Y~~~~~~~vL~-----------~isl~I~~G~~vaiVG~SGsGKSTL~~lL~g~y 511 (703)
.+.|++++--||.. +.-++ |.=+.|-+|++.+|+|++|+|||||+..|.+..
T Consensus 137 r~~fe~l~Pi~P~~--R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 137 RVNFDNLTPDYPRE--RFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCCGGGSCEECCCS--BCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ccccccCCCCCchh--hccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 44555555556632 22344 555678999999999999999999998888753
Done!