Query 005315
Match_columns 702
No_of_seqs 878 out of 4593
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 21:32:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2314 Translation initiation 100.0 3E-106 7E-111 786.8 47.5 646 36-702 32-696 (698)
2 COG5354 Uncharacterized protei 100.0 1.4E-49 3E-54 387.1 30.5 502 173-702 3-560 (561)
3 KOG0271 Notchless-like WD40 re 100.0 9E-42 1.9E-46 320.5 24.6 329 194-578 106-479 (480)
4 KOG2315 Predicted translation 100.0 7E-38 1.5E-42 309.6 37.0 402 173-603 3-414 (566)
5 KOG0271 Notchless-like WD40 re 100.0 4.3E-39 9.2E-44 302.5 23.8 310 245-614 117-476 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 3.7E-36 8E-41 286.8 23.8 275 201-578 173-458 (459)
7 KOG0318 WD40 repeat stress pro 100.0 7.9E-34 1.7E-38 277.7 38.5 394 171-614 158-597 (603)
8 KOG0318 WD40 repeat stress pro 100.0 2.3E-33 5E-38 274.5 37.6 401 168-613 27-554 (603)
9 KOG0291 WD40-repeat-containing 100.0 2.3E-32 4.9E-37 278.1 38.1 394 158-613 54-544 (893)
10 KOG0286 G-protein beta subunit 100.0 4.9E-33 1.1E-37 253.4 29.6 280 196-578 48-343 (343)
11 KOG0273 Beta-transducin family 100.0 1.7E-32 3.6E-37 265.2 29.3 317 200-579 175-522 (524)
12 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-33 3E-38 269.2 18.3 269 244-614 176-455 (459)
13 KOG0319 WD40-repeat-containing 100.0 6.6E-32 1.4E-36 274.7 30.7 437 162-647 150-642 (775)
14 KOG0306 WD40-repeat-containing 100.0 2.1E-30 4.5E-35 263.8 35.3 396 170-616 75-661 (888)
15 KOG0291 WD40-repeat-containing 100.0 6.4E-30 1.4E-34 260.4 37.8 358 171-584 276-713 (893)
16 KOG0279 G protein beta subunit 100.0 4.4E-30 9.6E-35 232.8 28.5 281 197-580 9-313 (315)
17 KOG0315 G-protein beta subunit 100.0 1E-29 2.2E-34 226.5 28.2 272 216-585 11-294 (311)
18 KOG0319 WD40-repeat-containing 100.0 1.1E-29 2.5E-34 258.5 31.7 392 165-614 111-572 (775)
19 KOG0279 G protein beta subunit 100.0 1.7E-29 3.6E-34 229.1 28.8 272 169-535 25-313 (315)
20 KOG0286 G-protein beta subunit 100.0 1.9E-29 4.2E-34 230.0 28.6 276 237-615 49-341 (343)
21 KOG0306 WD40-repeat-containing 100.0 4.1E-29 8.9E-34 254.4 32.4 402 171-616 32-619 (888)
22 KOG0273 Beta-transducin family 100.0 7.9E-29 1.7E-33 239.8 30.2 312 169-535 188-523 (524)
23 KOG0645 WD40 repeat protein [G 100.0 1.2E-28 2.6E-33 222.6 29.0 282 196-580 7-311 (312)
24 KOG0293 WD40 repeat-containing 100.0 1.2E-29 2.7E-34 241.2 21.4 285 193-580 214-513 (519)
25 KOG0315 G-protein beta subunit 100.0 2.4E-28 5.2E-33 217.7 28.0 285 177-553 15-308 (311)
26 KOG0265 U5 snRNP-specific prot 100.0 9.5E-28 2.1E-32 219.9 27.9 288 193-577 37-335 (338)
27 KOG0295 WD40 repeat-containing 100.0 1.9E-28 4.2E-33 229.9 23.8 305 143-578 89-404 (406)
28 KOG0296 Angio-associated migra 100.0 1.3E-27 2.9E-32 224.5 28.8 319 167-580 72-398 (399)
29 KOG0282 mRNA splicing factor [ 100.0 2.7E-29 5.9E-34 244.1 17.7 287 193-578 204-503 (503)
30 KOG0284 Polyadenylation factor 100.0 3.5E-29 7.7E-34 238.0 18.0 274 203-580 96-380 (464)
31 KOG1407 WD40 repeat protein [F 100.0 9.9E-28 2.1E-32 215.4 25.5 284 197-535 14-311 (313)
32 KOG0263 Transcription initiati 100.0 1E-28 2.2E-33 254.5 19.3 266 203-580 378-649 (707)
33 cd00200 WD40 WD40 domain, foun 100.0 1.2E-26 2.6E-31 234.2 33.1 279 197-578 3-289 (289)
34 KOG0284 Polyadenylation factor 100.0 3.6E-28 7.8E-33 231.2 16.5 274 166-486 103-380 (464)
35 KOG0266 WD40 repeat-containing 100.0 1.3E-26 2.7E-31 246.7 28.7 280 202-580 158-454 (456)
36 PLN00181 protein SPA1-RELATED; 100.0 1.5E-25 3.2E-30 256.9 36.5 284 199-579 479-792 (793)
37 PF08662 eIF2A: Eukaryotic tra 100.0 1.1E-26 2.4E-31 216.4 21.4 190 396-594 2-193 (194)
38 KOG0296 Angio-associated migra 99.9 5.5E-26 1.2E-30 213.7 24.9 312 242-613 63-392 (399)
39 KOG0295 WD40 repeat-containing 99.9 4.6E-26 9.9E-31 214.0 20.2 272 243-614 108-401 (406)
40 KOG0292 Vesicle coat complex C 99.9 2.4E-24 5.3E-29 223.2 34.5 267 165-475 15-314 (1202)
41 KOG0285 Pleiotropic regulator 99.9 1.8E-25 3.9E-30 209.2 23.4 303 186-600 136-454 (460)
42 KOG0293 WD40 repeat-containing 99.9 7.6E-26 1.6E-30 215.5 19.4 273 242-615 223-509 (519)
43 KOG2106 Uncharacterized conser 99.9 1.7E-23 3.6E-28 204.5 35.7 398 164-613 57-515 (626)
44 KOG2096 WD40 repeat protein [G 99.9 1.3E-24 2.9E-29 200.5 26.2 303 197-578 80-400 (420)
45 KOG0973 Histone transcription 99.9 3.3E-25 7.2E-30 236.5 25.7 288 201-581 11-356 (942)
46 KOG1539 WD repeat protein [Gen 99.9 3.8E-24 8.3E-29 221.1 32.0 390 164-610 163-638 (910)
47 KOG0645 WD40 repeat protein [G 99.9 3.3E-24 7.1E-29 194.0 26.3 282 287-614 6-306 (312)
48 KOG0305 Anaphase promoting com 99.9 1.4E-24 3.1E-29 220.6 27.0 273 205-581 179-462 (484)
49 KOG0292 Vesicle coat complex C 99.9 1.6E-24 3.5E-29 224.5 27.0 309 199-580 5-321 (1202)
50 KOG1407 WD40 repeat protein [F 99.9 3.7E-24 7.9E-29 192.6 25.3 281 243-579 20-310 (313)
51 KOG0263 Transcription initiati 99.9 9.5E-25 2.1E-29 225.4 22.8 205 195-488 443-651 (707)
52 cd00200 WD40 WD40 domain, foun 99.9 1E-23 2.2E-28 212.7 29.8 270 243-614 9-286 (289)
53 KOG0316 Conserved WD40 repeat- 99.9 5.2E-24 1.1E-28 188.6 23.4 268 242-611 16-292 (307)
54 KOG0275 Conserved WD40 repeat- 99.9 3.7E-25 8.1E-30 204.3 16.8 276 201-578 211-507 (508)
55 KOG0265 U5 snRNP-specific prot 99.9 9E-24 2E-28 193.9 25.5 283 159-533 47-336 (338)
56 KOG1408 WD40 repeat protein [F 99.9 1.3E-23 2.8E-28 212.9 27.5 233 352-614 461-708 (1080)
57 KOG0643 Translation initiation 99.9 1.8E-23 3.8E-28 188.8 25.4 287 242-581 9-318 (327)
58 KOG0282 mRNA splicing factor [ 99.9 1.2E-24 2.6E-29 211.9 19.3 285 154-533 199-503 (503)
59 KOG0266 WD40 repeat-containing 99.9 3.9E-24 8.4E-29 227.7 24.5 272 243-614 159-449 (456)
60 KOG0285 Pleiotropic regulator 99.9 4.2E-24 9.2E-29 200.1 21.2 270 241-614 149-434 (460)
61 KOG0973 Histone transcription 99.9 6.4E-24 1.4E-28 226.8 24.8 267 180-536 35-356 (942)
62 KOG0772 Uncharacterized conser 99.9 4.6E-24 9.9E-29 208.9 21.5 302 193-577 157-484 (641)
63 KOG0278 Serine/threonine kinas 99.9 2.5E-24 5.4E-29 192.2 17.0 279 196-580 7-297 (334)
64 KOG0276 Vesicle coat complex C 99.9 8.8E-23 1.9E-27 204.4 29.8 382 171-610 65-482 (794)
65 KOG2106 Uncharacterized conser 99.9 9.5E-23 2.1E-27 199.3 29.0 417 97-579 153-625 (626)
66 KOG1446 Histone H3 (Lys4) meth 99.9 6.3E-22 1.4E-26 183.9 32.3 286 193-580 4-303 (311)
67 KOG0305 Anaphase promoting com 99.9 4.4E-23 9.5E-28 209.9 26.0 267 173-487 189-462 (484)
68 KOG0643 Translation initiation 99.9 8.2E-23 1.8E-27 184.5 24.7 289 197-535 4-317 (327)
69 KOG0316 Conserved WD40 repeat- 99.9 1.2E-22 2.5E-27 180.1 24.5 275 195-577 9-296 (307)
70 KOG1063 RNA polymerase II elon 99.9 2.4E-22 5.2E-27 203.9 29.7 388 181-614 33-643 (764)
71 KOG0275 Conserved WD40 repeat- 99.9 6.5E-24 1.4E-28 196.1 16.5 275 245-614 215-504 (508)
72 KOG0276 Vesicle coat complex C 99.9 7.9E-23 1.7E-27 204.7 25.3 357 197-613 7-411 (794)
73 KOG0310 Conserved WD40 repeat- 99.9 8.3E-23 1.8E-27 199.6 24.7 277 201-578 24-307 (487)
74 PLN00181 protein SPA1-RELATED; 99.9 1.7E-22 3.7E-27 231.7 31.0 287 224-614 457-788 (793)
75 KOG0268 Sof1-like rRNA process 99.9 6.1E-23 1.3E-27 192.9 21.5 277 197-580 60-345 (433)
76 KOG2314 Translation initiation 99.9 5.5E-22 1.2E-26 196.2 29.1 315 246-609 213-557 (698)
77 KOG0288 WD40 repeat protein Ti 99.9 1.2E-23 2.6E-28 201.0 16.0 284 194-578 166-459 (459)
78 KOG2055 WD40 repeat protein [G 99.9 2.2E-22 4.8E-27 195.0 24.5 286 202-580 212-512 (514)
79 KOG0283 WD40 repeat-containing 99.9 6.1E-23 1.3E-27 214.0 20.5 246 199-535 262-576 (712)
80 KOG0299 U3 snoRNP-associated p 99.9 1.2E-21 2.5E-26 190.2 24.0 271 196-566 135-446 (479)
81 KOG1446 Histone H3 (Lys4) meth 99.9 9.7E-21 2.1E-25 176.0 27.8 264 244-609 15-295 (311)
82 KOG1539 WD repeat protein [Gen 99.9 1.2E-20 2.7E-25 195.4 31.4 388 179-614 131-601 (910)
83 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.4E-20 9.5E-25 188.4 34.8 282 215-599 1-300 (300)
84 KOG0313 Microtubule binding pr 99.9 6.4E-21 1.4E-25 180.6 25.6 273 164-535 106-418 (423)
85 KOG0313 Microtubule binding pr 99.9 2.7E-21 5.8E-26 183.1 22.6 300 234-614 95-413 (423)
86 KOG0641 WD40 repeat protein [G 99.9 4.3E-20 9.3E-25 162.7 28.3 274 237-613 25-343 (350)
87 KOG0278 Serine/threonine kinas 99.9 1.9E-22 4E-27 180.3 13.4 270 242-614 13-292 (334)
88 KOG0310 Conserved WD40 repeat- 99.9 2.8E-21 6E-26 189.0 22.2 267 243-611 26-301 (487)
89 KOG1273 WD40 repeat protein [G 99.9 1.7E-21 3.6E-26 180.0 19.3 273 237-607 17-311 (405)
90 KOG2048 WD40 repeat protein [G 99.9 4E-19 8.7E-24 180.5 38.1 430 129-601 39-529 (691)
91 KOG0289 mRNA splicing factor [ 99.9 1.1E-20 2.4E-25 181.8 25.1 285 238-579 214-505 (506)
92 KOG0640 mRNA cleavage stimulat 99.9 1.8E-21 3.9E-26 179.2 18.8 283 198-578 107-424 (430)
93 PTZ00420 coronin; Provisional 99.9 1.5E-20 3.3E-25 199.8 28.7 251 182-514 54-318 (568)
94 KOG0281 Beta-TrCP (transducin 99.9 5.2E-22 1.1E-26 185.3 15.3 265 244-582 198-479 (499)
95 KOG0277 Peroxisomal targeting 99.9 4.6E-21 1E-25 172.0 20.5 273 207-579 12-308 (311)
96 KOG0268 Sof1-like rRNA process 99.9 3.6E-22 7.8E-27 187.7 13.1 259 313-614 71-340 (433)
97 KOG2096 WD40 repeat protein [G 99.9 1.7E-20 3.7E-25 173.5 23.6 280 243-609 86-393 (420)
98 KOG1063 RNA polymerase II elon 99.9 5.2E-20 1.1E-24 187.0 29.0 370 193-600 181-675 (764)
99 KOG1273 WD40 repeat protein [G 99.9 2.9E-20 6.3E-25 171.8 24.6 279 206-580 26-322 (405)
100 KOG1408 WD40 repeat protein [F 99.9 3.9E-20 8.4E-25 187.9 27.0 319 165-581 330-714 (1080)
101 KOG4497 Uncharacterized conser 99.9 4.9E-21 1.1E-25 177.8 18.8 343 208-610 13-423 (447)
102 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.8E-19 1E-23 180.6 34.9 288 174-555 3-300 (300)
103 KOG0772 Uncharacterized conser 99.9 6.2E-21 1.3E-25 187.2 19.3 284 245-613 169-481 (641)
104 PTZ00421 coronin; Provisional 99.9 1.7E-19 3.6E-24 191.3 31.6 266 204-513 21-314 (493)
105 KOG1274 WD40 repeat protein [G 99.9 3.7E-20 8E-25 194.1 26.1 263 242-603 12-284 (933)
106 KOG0647 mRNA export protein (c 99.9 8.4E-20 1.8E-24 168.1 24.8 271 202-565 26-313 (347)
107 KOG0283 WD40 repeat-containing 99.9 2E-20 4.3E-25 195.4 22.9 239 243-581 267-577 (712)
108 KOG0288 WD40 repeat protein Ti 99.9 2.7E-21 5.9E-26 184.9 14.8 272 237-613 169-455 (459)
109 KOG0639 Transducin-like enhanc 99.9 1.7E-20 3.8E-25 183.2 20.4 277 201-579 417-703 (705)
110 KOG0640 mRNA cleavage stimulat 99.9 2.1E-20 4.6E-25 172.2 19.4 277 242-616 111-423 (430)
111 KOG0641 WD40 repeat protein [G 99.9 1.2E-18 2.5E-23 153.7 29.5 283 203-581 32-350 (350)
112 KOG0289 mRNA splicing factor [ 99.9 1.2E-19 2.6E-24 174.7 24.7 268 174-534 232-505 (506)
113 KOG2055 WD40 repeat protein [G 99.9 6.2E-20 1.4E-24 178.1 20.7 271 242-614 212-507 (514)
114 KOG0646 WD40 repeat protein [G 99.9 8.3E-19 1.8E-23 170.9 28.5 279 226-599 20-329 (476)
115 KOG0281 Beta-TrCP (transducin 99.8 2.8E-20 6.1E-25 173.9 16.0 273 202-538 196-480 (499)
116 KOG1036 Mitotic spindle checkp 99.8 1.5E-18 3.3E-23 160.6 27.2 271 203-566 13-295 (323)
117 PTZ00421 coronin; Provisional 99.8 1.1E-18 2.4E-23 185.1 29.3 229 198-464 70-314 (493)
118 KOG0300 WD40 repeat-containing 99.8 1.6E-19 3.5E-24 166.8 19.4 285 194-580 139-476 (481)
119 PTZ00420 coronin; Provisional 99.8 2E-18 4.3E-23 183.7 30.7 237 275-601 54-318 (568)
120 KOG0274 Cdc4 and related F-box 99.8 6E-19 1.3E-23 187.1 26.5 270 201-581 206-483 (537)
121 KOG0639 Transducin-like enhanc 99.8 1.8E-19 4E-24 176.2 20.0 263 173-485 431-703 (705)
122 KOG0294 WD40 repeat-containing 99.8 1.2E-18 2.5E-23 161.6 24.1 241 195-488 35-283 (362)
123 KOG1445 Tumor-specific antigen 99.8 1.5E-18 3.2E-23 174.2 24.5 157 453-620 627-795 (1012)
124 KOG0277 Peroxisomal targeting 99.8 3.5E-19 7.6E-24 160.1 17.6 286 104-485 14-308 (311)
125 KOG1274 WD40 repeat protein [G 99.8 2.3E-18 5E-23 180.8 26.1 268 201-565 11-290 (933)
126 KOG1538 Uncharacterized conser 99.8 1.2E-17 2.7E-22 168.7 28.9 270 161-486 14-293 (1081)
127 KOG0650 WD40 repeat nucleolar 99.8 2.4E-18 5.2E-23 172.1 23.4 296 197-532 394-732 (733)
128 KOG2048 WD40 repeat protein [G 99.8 6.6E-17 1.4E-21 164.6 33.9 388 173-613 38-499 (691)
129 KOG4283 Transcription-coupled 99.8 1E-17 2.2E-22 153.7 24.6 297 200-579 40-364 (397)
130 KOG0646 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 162.6 26.0 286 183-562 19-336 (476)
131 KOG1009 Chromatin assembly com 99.8 5.5E-18 1.2E-22 162.4 22.9 330 163-585 17-377 (434)
132 KOG0294 WD40 repeat-containing 99.8 8E-18 1.7E-22 156.0 22.1 231 245-582 45-283 (362)
133 KOG1332 Vesicle coat complex C 99.8 2.7E-18 5.8E-23 153.6 17.2 247 244-535 12-286 (299)
134 KOG0299 U3 snoRNP-associated p 99.8 1.4E-17 3E-22 162.1 22.7 275 242-607 141-443 (479)
135 KOG0269 WD40 repeat-containing 99.8 3.2E-18 7E-23 176.3 18.5 270 205-565 41-330 (839)
136 KOG1538 Uncharacterized conser 99.8 6.4E-18 1.4E-22 170.7 19.8 273 245-582 14-295 (1081)
137 KOG0300 WD40 repeat-containing 99.8 1.5E-17 3.3E-22 153.8 20.6 266 171-536 159-477 (481)
138 KOG0647 mRNA export protein (c 99.8 7.5E-17 1.6E-21 148.8 24.9 276 160-522 28-313 (347)
139 KOG0650 WD40 repeat nucleolar 99.8 1.4E-17 3.1E-22 166.7 21.7 279 242-578 399-733 (733)
140 KOG1963 WD40 repeat protein [G 99.8 3.1E-16 6.7E-21 164.8 32.5 317 181-536 180-539 (792)
141 KOG1332 Vesicle coat complex C 99.8 1.7E-17 3.6E-22 148.5 18.8 249 198-486 6-286 (299)
142 KOG0301 Phospholipase A2-activ 99.8 5.7E-17 1.2E-21 165.3 25.0 273 195-580 6-288 (745)
143 KOG0264 Nucleosome remodeling 99.8 1.9E-17 4.1E-22 161.3 20.6 250 238-583 118-407 (422)
144 KOG4497 Uncharacterized conser 99.8 3.8E-17 8.3E-22 152.2 20.3 324 173-565 62-422 (447)
145 KOG0308 Conserved WD40 repeat- 99.8 2.8E-17 6E-22 166.3 20.4 315 208-580 29-393 (735)
146 KOG2919 Guanine nucleotide-bin 99.8 1.2E-16 2.6E-21 148.7 23.0 266 208-565 54-360 (406)
147 KOG0274 Cdc4 and related F-box 99.8 9.5E-17 2.1E-21 170.5 25.2 261 175-542 221-489 (537)
148 KOG0308 Conserved WD40 repeat- 99.8 7.3E-18 1.6E-22 170.4 15.7 242 248-581 29-286 (735)
149 KOG2445 Nuclear pore complex c 99.8 7.3E-16 1.6E-20 142.7 25.5 253 200-535 10-318 (361)
150 KOG4378 Nuclear protein COP1 [ 99.8 1.7E-16 3.6E-21 155.5 21.9 285 175-557 6-305 (673)
151 KOG1034 Transcriptional repres 99.7 1.1E-16 2.3E-21 149.4 19.5 311 200-579 35-382 (385)
152 KOG0269 WD40 repeat-containing 99.7 6.8E-17 1.5E-21 166.7 19.9 234 204-475 88-332 (839)
153 KOG2110 Uncharacterized conser 99.7 7E-15 1.5E-19 139.8 29.8 235 203-535 5-248 (391)
154 KOG2139 WD40 repeat protein [G 99.7 1.7E-15 3.6E-20 143.2 24.9 294 174-535 112-431 (445)
155 PRK03629 tolB translocation pr 99.7 9.1E-15 2E-19 155.1 33.2 244 331-600 180-428 (429)
156 KOG0307 Vesicle coat complex C 99.7 2E-16 4.2E-21 170.7 20.5 241 311-582 67-329 (1049)
157 KOG4378 Nuclear protein COP1 [ 99.7 8.1E-16 1.7E-20 150.8 22.4 282 217-601 5-305 (673)
158 KOG1036 Mitotic spindle checkp 99.7 2.3E-15 5E-20 139.7 24.2 273 160-522 14-294 (323)
159 KOG0267 Microtubule severing p 99.7 1.8E-17 3.9E-22 169.6 10.8 238 226-565 16-258 (825)
160 KOG2919 Guanine nucleotide-bin 99.7 8E-16 1.7E-20 143.2 20.1 278 246-610 52-361 (406)
161 KOG1034 Transcriptional repres 99.7 3.3E-15 7.1E-20 139.6 24.1 286 171-535 53-383 (385)
162 KOG4328 WD40 protein [Function 99.7 2.9E-15 6.3E-20 145.9 24.0 290 240-580 183-495 (498)
163 KOG1445 Tumor-specific antigen 99.7 3.7E-15 8.1E-20 150.1 25.4 156 401-578 629-796 (1012)
164 COG5354 Uncharacterized protei 99.7 1.1E-14 2.3E-19 144.0 27.6 364 164-581 37-436 (561)
165 KOG2445 Nuclear pore complex c 99.7 4.4E-15 9.6E-20 137.6 23.3 256 243-580 12-318 (361)
166 KOG0264 Nucleosome remodeling 99.7 1.2E-15 2.7E-20 148.7 20.6 235 179-486 144-404 (422)
167 KOG4283 Transcription-coupled 99.7 4.4E-15 9.5E-20 136.6 22.6 290 242-618 42-364 (397)
168 KOG0301 Phospholipase A2-activ 99.7 3.6E-15 7.7E-20 152.4 24.4 254 176-535 28-288 (745)
169 PRK11028 6-phosphogluconolacto 99.7 4.6E-14 9.9E-19 145.6 33.0 271 221-580 9-304 (330)
170 KOG2315 Predicted translation 99.7 2E-14 4.4E-19 143.9 28.6 341 217-608 4-373 (566)
171 KOG0321 WD40 repeat-containing 99.7 2.9E-15 6.3E-20 151.5 22.4 297 209-580 55-391 (720)
172 KOG1524 WD40 repeat-containing 99.7 1.9E-14 4.1E-19 142.6 27.3 198 135-367 44-243 (737)
173 KOG0267 Microtubule severing p 99.7 8.7E-17 1.9E-21 164.6 10.3 214 174-420 41-259 (825)
174 PRK11028 6-phosphogluconolacto 99.7 1.5E-13 3.3E-18 141.7 34.1 274 174-487 4-305 (330)
175 PRK05137 tolB translocation pr 99.7 5.2E-14 1.1E-18 150.3 31.6 249 331-600 183-433 (435)
176 KOG1963 WD40 repeat protein [G 99.7 3.1E-14 6.6E-19 150.0 28.6 321 206-581 163-539 (792)
177 COG2319 FOG: WD40 repeat [Gene 99.7 3.3E-13 7.1E-18 144.5 37.3 358 198-613 60-436 (466)
178 PRK01742 tolB translocation pr 99.7 1.6E-14 3.5E-19 153.6 26.2 238 330-601 184-427 (429)
179 PF02239 Cytochrom_D1: Cytochr 99.7 2.7E-13 5.8E-18 139.4 33.2 313 216-582 6-349 (369)
180 PRK01742 tolB translocation pr 99.7 1.8E-14 3.9E-19 153.3 25.1 233 226-513 186-426 (429)
181 PRK05137 tolB translocation pr 99.7 6.7E-14 1.4E-18 149.5 28.9 243 226-556 184-433 (435)
182 PRK03629 tolB translocation pr 99.7 3.2E-14 7E-19 150.9 26.2 236 186-463 183-427 (429)
183 KOG1009 Chromatin assembly com 99.7 1.6E-14 3.5E-19 138.9 21.0 140 204-367 14-182 (434)
184 KOG0290 Conserved WD40 repeat- 99.7 3.8E-14 8.2E-19 130.3 22.5 288 203-532 44-362 (364)
185 PRK02889 tolB translocation pr 99.7 4.9E-14 1.1E-18 149.7 27.1 248 330-600 176-425 (427)
186 KOG4227 WD40 repeat protein [G 99.6 2.4E-14 5.2E-19 136.5 21.6 293 199-535 52-387 (609)
187 PF02239 Cytochrom_D1: Cytochr 99.6 2.5E-13 5.4E-18 139.6 31.1 335 173-560 6-365 (369)
188 COG2319 FOG: WD40 repeat [Gene 99.6 2.4E-12 5.3E-17 137.7 40.3 344 178-581 83-443 (466)
189 PRK04922 tolB translocation pr 99.6 4E-14 8.7E-19 151.0 25.7 243 275-599 184-432 (433)
190 KOG4328 WD40 protein [Function 99.6 1.9E-14 4E-19 140.4 19.8 268 313-609 191-484 (498)
191 PRK02889 tolB translocation pr 99.6 1.2E-13 2.6E-18 146.8 27.1 245 275-556 176-425 (427)
192 KOG1524 WD40 repeat-containing 99.6 1.8E-14 3.9E-19 142.7 18.9 253 201-565 12-276 (737)
193 KOG0307 Vesicle coat complex C 99.6 3.1E-15 6.6E-20 161.7 14.7 244 205-538 66-330 (1049)
194 PRK04922 tolB translocation pr 99.6 1.5E-13 3.2E-18 146.7 27.6 242 226-555 186-432 (433)
195 KOG0270 WD40 repeat-containing 99.6 1.1E-13 2.5E-18 134.5 22.1 289 208-540 130-454 (463)
196 KOG0302 Ribosome Assembly prot 99.6 2.3E-14 4.9E-19 136.4 16.7 196 391-609 203-429 (440)
197 KOG0302 Ribosome Assembly prot 99.6 9.5E-14 2.1E-18 132.2 20.6 203 245-487 153-379 (440)
198 COG4946 Uncharacterized protei 99.6 6.6E-12 1.4E-16 123.2 33.3 373 186-605 61-504 (668)
199 PRK01029 tolB translocation pr 99.6 1.2E-12 2.5E-17 138.4 30.3 252 275-557 165-426 (428)
200 KOG0321 WD40 repeat-containing 99.6 2E-13 4.4E-18 138.4 22.8 286 168-488 60-393 (720)
201 KOG0771 Prolactin regulatory e 99.6 3.4E-13 7.3E-18 130.9 22.7 197 313-581 149-355 (398)
202 KOG2139 WD40 repeat protein [G 99.6 1.7E-12 3.8E-17 123.1 24.6 307 204-580 99-431 (445)
203 PRK04792 tolB translocation pr 99.6 1.7E-12 3.8E-17 138.3 27.8 247 331-600 199-447 (448)
204 PRK04792 tolB translocation pr 99.6 1.8E-12 3.9E-17 138.1 27.0 242 226-513 200-447 (448)
205 PRK01029 tolB translocation pr 99.5 3.7E-12 8E-17 134.6 28.4 248 226-514 167-426 (428)
206 KOG0771 Prolactin regulatory e 99.5 2.1E-13 4.6E-18 132.3 16.2 193 207-486 148-354 (398)
207 KOG0322 G-protein beta subunit 99.5 4.9E-13 1.1E-17 121.5 17.0 302 193-579 4-322 (323)
208 PRK00178 tolB translocation pr 99.5 3.7E-12 7.9E-17 136.4 26.8 247 331-600 180-428 (430)
209 KOG0644 Uncharacterized conser 99.5 6E-14 1.3E-18 146.0 11.9 278 196-537 183-470 (1113)
210 PRK00178 tolB translocation pr 99.5 7.7E-12 1.7E-16 133.9 28.2 243 226-513 181-428 (430)
211 KOG0644 Uncharacterized conser 99.5 9.6E-14 2.1E-18 144.5 11.5 271 242-580 189-468 (1113)
212 KOG1007 WD repeat protein TSSC 99.5 7.8E-12 1.7E-16 115.2 22.4 255 197-535 57-361 (370)
213 PF08662 eIF2A: Eukaryotic tra 99.5 5.2E-13 1.1E-17 124.6 15.2 148 457-610 9-164 (194)
214 TIGR02800 propeller_TolB tol-p 99.5 8.6E-12 1.9E-16 133.5 26.7 241 275-597 170-416 (417)
215 TIGR02800 propeller_TolB tol-p 99.5 1.6E-11 3.4E-16 131.5 28.6 241 226-554 172-417 (417)
216 KOG1587 Cytoplasmic dynein int 99.5 1.1E-11 2.4E-16 131.0 25.3 261 226-535 224-516 (555)
217 PF10282 Lactonase: Lactonase, 99.5 8.1E-10 1.7E-14 114.1 38.2 288 225-553 14-345 (345)
218 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.2E-10 9.2E-15 112.9 34.7 284 225-543 28-338 (352)
219 KOG2111 Uncharacterized conser 99.5 1.2E-10 2.7E-15 109.1 28.2 238 206-536 8-257 (346)
220 KOG2394 WD40 protein DMR-N9 [G 99.5 1.2E-11 2.5E-16 123.4 22.3 239 246-555 126-384 (636)
221 COG2706 3-carboxymuconate cycl 99.5 8.6E-10 1.9E-14 106.0 33.9 283 181-490 15-325 (346)
222 KOG0642 Cell-cycle nuclear pro 99.5 7.4E-13 1.6E-17 132.8 13.7 244 242-583 293-564 (577)
223 KOG3881 Uncharacterized conser 99.5 2.1E-11 4.7E-16 117.2 22.9 218 320-603 115-345 (412)
224 KOG1272 WD40-repeat-containing 99.5 5.7E-13 1.2E-17 130.3 12.3 256 207-565 133-399 (545)
225 KOG0270 WD40 repeat-containing 99.4 5.9E-12 1.3E-16 122.8 18.9 211 174-416 194-435 (463)
226 KOG0303 Actin-binding protein 99.4 1.2E-11 2.6E-16 118.7 20.1 140 198-363 76-229 (472)
227 KOG0290 Conserved WD40 repeat- 99.4 3.5E-11 7.5E-16 111.1 22.1 264 313-605 49-352 (364)
228 KOG2394 WD40 protein DMR-N9 [G 99.4 1.7E-11 3.7E-16 122.3 21.2 136 453-599 219-384 (636)
229 KOG1188 WD40 repeat protein [G 99.4 1.9E-11 4.1E-16 115.5 19.8 287 174-535 42-346 (376)
230 COG2706 3-carboxymuconate cycl 99.4 2E-10 4.2E-15 110.4 26.6 269 323-610 6-311 (346)
231 PRK04043 tolB translocation pr 99.4 1.3E-10 2.8E-15 122.0 26.9 208 183-420 168-388 (419)
232 KOG1007 WD repeat protein TSSC 99.4 5E-11 1.1E-15 109.9 20.6 196 159-383 63-287 (370)
233 PF10282 Lactonase: Lactonase, 99.4 3.6E-09 7.9E-14 109.2 37.2 279 204-510 37-345 (345)
234 KOG0649 WD40 repeat protein [G 99.4 1E-10 2.3E-15 105.3 21.8 258 243-606 10-302 (325)
235 KOG1310 WD40 repeat protein [G 99.4 7.2E-12 1.6E-16 125.0 15.8 161 193-383 40-229 (758)
236 KOG0303 Actin-binding protein 99.4 2.4E-11 5.3E-16 116.7 18.6 184 171-382 92-291 (472)
237 KOG2110 Uncharacterized conser 99.4 1.3E-10 2.8E-15 111.2 23.3 235 313-583 10-251 (391)
238 KOG4227 WD40 repeat protein [G 99.4 5.9E-11 1.3E-15 113.6 20.8 279 243-578 55-385 (609)
239 KOG1517 Guanine nucleotide bin 99.4 1.2E-10 2.5E-15 125.1 25.0 290 205-581 1066-1382(1387)
240 KOG1188 WD40 repeat protein [G 99.4 5E-11 1.1E-15 112.7 18.5 266 216-579 41-345 (376)
241 KOG2321 WD40 repeat protein [G 99.4 2E-10 4.3E-15 115.7 23.8 271 201-565 49-333 (703)
242 PRK04043 tolB translocation pr 99.4 5.1E-10 1.1E-14 117.5 28.1 223 352-597 189-419 (419)
243 KOG1587 Cytoplasmic dynein int 99.4 3.3E-10 7.2E-15 119.9 26.2 261 275-580 222-516 (555)
244 PLN03134 glycine-rich RNA-bind 99.3 4.8E-12 1E-16 110.9 9.6 79 56-135 31-111 (144)
245 KOG0642 Cell-cycle nuclear pro 99.3 1.3E-11 2.9E-16 123.9 13.9 252 198-539 289-565 (577)
246 KOG2321 WD40 repeat protein [G 99.3 8.4E-11 1.8E-15 118.3 19.0 254 313-610 56-334 (703)
247 KOG0322 G-protein beta subunit 99.3 3.7E-11 8E-16 109.5 15.0 289 240-614 11-318 (323)
248 COG4946 Uncharacterized protei 99.3 2.9E-09 6.4E-14 104.9 28.8 181 211-421 327-510 (668)
249 KOG1517 Guanine nucleotide bin 99.3 1.6E-10 3.4E-15 124.1 21.7 285 246-613 1067-1375(1387)
250 KOG1523 Actin-related protein 99.3 8.3E-11 1.8E-15 110.3 16.8 227 349-600 9-260 (361)
251 KOG1523 Actin-related protein 99.3 2E-10 4.4E-15 107.7 19.2 231 313-565 15-268 (361)
252 KOG1272 WD40-repeat-containing 99.3 6.2E-12 1.3E-16 123.2 9.5 250 245-601 131-391 (545)
253 TIGR02658 TTQ_MADH_Hv methylam 99.3 9.3E-09 2E-13 103.3 32.1 266 275-587 27-338 (352)
254 KOG1240 Protein kinase contain 99.3 2.2E-09 4.8E-14 117.4 25.9 158 187-367 1034-1212(1431)
255 KOG2111 Uncharacterized conser 99.2 2.2E-09 4.8E-14 100.9 21.7 238 313-581 10-257 (346)
256 KOG2041 WD40 repeat protein [G 99.2 1.4E-09 2.9E-14 112.2 21.3 339 204-611 15-400 (1189)
257 KOG1334 WD40 repeat protein [G 99.2 3.1E-10 6.6E-15 112.2 15.7 302 195-580 134-466 (559)
258 KOG0117 Heterogeneous nuclear 99.2 5.9E-11 1.3E-15 115.8 10.5 94 57-150 81-178 (506)
259 PF00930 DPPIV_N: Dipeptidyl p 99.2 2.4E-08 5.1E-13 103.5 29.7 314 212-565 1-347 (353)
260 KOG0131 Splicing factor 3b, su 99.2 2.9E-11 6.4E-16 103.5 5.8 82 55-137 5-88 (203)
261 KOG0121 Nuclear cap-binding pr 99.2 5.1E-11 1.1E-15 95.5 6.7 76 57-133 34-111 (153)
262 KOG0122 Translation initiation 99.2 6.1E-11 1.3E-15 106.6 7.9 75 58-133 188-264 (270)
263 PF04762 IKI3: IKI3 family; I 99.2 2E-07 4.4E-12 106.7 38.2 300 203-565 120-506 (928)
264 PF04762 IKI3: IKI3 family; I 99.2 2.6E-07 5.7E-12 105.8 38.3 329 202-580 74-456 (928)
265 PF00930 DPPIV_N: Dipeptidyl p 99.1 2.2E-07 4.8E-12 96.3 33.2 305 252-605 1-343 (353)
266 PF00076 RRM_1: RNA recognitio 99.1 1.6E-10 3.5E-15 88.8 7.4 67 62-130 1-69 (70)
267 PF07433 DUF1513: Protein of u 99.1 1.1E-07 2.4E-12 92.0 27.4 237 207-521 8-275 (305)
268 KOG1354 Serine/threonine prote 99.1 1.5E-08 3.1E-13 96.3 20.6 324 204-577 26-431 (433)
269 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.1 2.3E-10 5E-15 119.2 9.2 77 57-134 267-345 (352)
270 KOG0126 Predicted RNA-binding 99.1 1.6E-11 3.5E-16 104.8 0.2 75 59-134 35-111 (219)
271 KOG1354 Serine/threonine prote 99.1 1.7E-08 3.6E-13 95.9 20.0 277 245-580 27-359 (433)
272 KOG0111 Cyclophilin-type pepti 99.1 7.2E-11 1.6E-15 103.8 4.0 77 59-136 10-88 (298)
273 KOG1912 WD40 repeat protein [G 99.1 1.9E-08 4E-13 105.1 22.1 245 205-487 17-305 (1062)
274 KOG0107 Alternative splicing f 99.1 3.6E-10 7.8E-15 96.3 6.9 74 57-136 8-83 (195)
275 TIGR01659 sex-lethal sex-letha 99.1 4.7E-10 1E-14 113.3 8.8 75 58-133 106-182 (346)
276 KOG4207 Predicted splicing fac 99.1 2.6E-10 5.7E-15 99.6 6.0 74 60-134 14-89 (256)
277 KOG1310 WD40 repeat protein [G 99.0 5.4E-09 1.2E-13 104.9 14.0 116 242-384 48-177 (758)
278 KOG2041 WD40 repeat protein [G 99.0 4.4E-08 9.6E-13 101.3 21.0 280 244-579 15-336 (1189)
279 KOG1334 WD40 repeat protein [G 99.0 5.3E-09 1.1E-13 103.6 13.8 286 243-616 141-463 (559)
280 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.0 8.7E-10 1.9E-14 114.8 8.7 75 59-134 3-79 (352)
281 TIGR01645 half-pint poly-U bin 99.0 1.3E-09 2.8E-14 116.1 8.3 77 57-134 105-183 (612)
282 PF14259 RRM_6: RNA recognitio 99.0 2.3E-09 5E-14 82.1 7.4 66 62-128 1-68 (70)
283 KOG1240 Protein kinase contain 98.9 3.2E-08 6.9E-13 108.6 18.4 259 280-582 1034-1336(1431)
284 TIGR01645 half-pint poly-U bin 98.9 2.3E-09 5E-14 114.2 9.1 75 59-134 204-280 (612)
285 KOG1912 WD40 repeat protein [G 98.9 2.7E-07 5.8E-12 96.8 23.3 136 176-336 28-184 (1062)
286 TIGR01659 sex-lethal sex-letha 98.9 4.1E-09 8.8E-14 106.6 9.7 79 59-137 193-274 (346)
287 KOG3881 Uncharacterized conser 98.9 1.1E-07 2.4E-12 92.1 18.3 123 411-556 216-342 (412)
288 KOG0649 WD40 repeat protein [G 98.9 1.4E-07 3.1E-12 85.4 17.7 159 149-338 104-274 (325)
289 COG0823 TolB Periplasmic compo 98.9 3.4E-07 7.3E-12 95.5 23.3 211 275-522 173-389 (425)
290 PLN03213 repressor of silencin 98.9 3.3E-09 7.1E-14 104.7 7.7 79 59-142 10-94 (759)
291 COG0823 TolB Periplasmic compo 98.9 2.4E-07 5.2E-12 96.6 21.4 225 352-599 194-423 (425)
292 KOG0149 Predicted RNA-binding 98.9 2.7E-09 5.8E-14 96.0 5.6 63 60-122 13-77 (247)
293 PF15492 Nbas_N: Neuroblastoma 98.9 1.9E-06 4.1E-11 80.9 24.5 145 208-367 2-164 (282)
294 PLN03120 nucleic acid binding 98.9 9.1E-09 2E-13 96.4 8.8 75 59-138 4-80 (260)
295 TIGR01648 hnRNP-R-Q heterogene 98.9 5.1E-09 1.1E-13 111.5 8.1 76 58-134 57-134 (578)
296 KOG0145 RNA-binding protein EL 98.8 5.2E-09 1.1E-13 94.8 6.6 75 59-134 41-117 (360)
297 PF07433 DUF1513: Protein of u 98.8 5.7E-06 1.2E-10 80.3 26.2 249 246-565 7-276 (305)
298 PLN02919 haloacid dehalogenase 98.8 2.8E-06 6.1E-11 99.4 28.4 119 455-583 741-891 (1057)
299 KOG0130 RNA-binding protein RB 98.8 1E-08 2.2E-13 83.2 5.7 69 59-127 72-142 (170)
300 KOG0108 mRNA cleavage and poly 98.8 1.4E-08 3.1E-13 103.7 7.9 76 60-136 19-96 (435)
301 KOG0974 WD-repeat protein WDR6 98.8 2.7E-07 5.8E-12 100.2 17.4 134 429-583 154-291 (967)
302 KOG4547 WD40 repeat-containing 98.8 2.7E-06 5.8E-11 87.2 23.6 197 252-487 2-221 (541)
303 KOG0113 U1 small nuclear ribon 98.8 2.4E-08 5.3E-13 92.8 8.2 74 57-130 99-174 (335)
304 PLN03121 nucleic acid binding 98.8 4.3E-08 9.3E-13 90.2 9.7 74 59-137 5-80 (243)
305 KOG0114 Predicted RNA-binding 98.8 4.2E-08 9E-13 75.9 8.0 84 55-142 14-99 (124)
306 KOG0148 Apoptosis-promoting RN 98.7 1.9E-08 4.1E-13 92.0 6.5 73 61-134 64-138 (321)
307 KOG0974 WD-repeat protein WDR6 98.7 2.5E-06 5.3E-11 93.0 23.0 179 174-385 101-288 (967)
308 KOG4547 WD40 repeat-containing 98.7 1.2E-06 2.6E-11 89.7 19.2 189 169-388 2-223 (541)
309 KOG0145 RNA-binding protein EL 98.7 4.4E-08 9.6E-13 88.9 8.0 74 59-133 278-353 (360)
310 smart00361 RRM_1 RNA recogniti 98.7 4.8E-08 1E-12 74.3 7.0 60 72-132 2-69 (70)
311 PF14583 Pectate_lyase22: Olig 98.7 2.9E-05 6.3E-10 77.8 28.5 284 207-533 39-379 (386)
312 TIGR01622 SF-CC1 splicing fact 98.7 7.2E-08 1.6E-12 104.2 10.8 78 59-137 186-265 (457)
313 smart00360 RRM RNA recognition 98.7 6.4E-08 1.4E-12 74.2 7.3 68 64-132 1-70 (71)
314 TIGR01642 U2AF_lg U2 snRNP aux 98.7 5.2E-08 1.1E-12 106.9 9.5 76 59-135 295-372 (509)
315 KOG0124 Polypyrimidine tract-b 98.6 2.2E-08 4.7E-13 95.2 4.4 80 60-140 114-195 (544)
316 smart00362 RRM_2 RNA recogniti 98.6 1.6E-07 3.5E-12 72.1 8.2 69 61-132 1-71 (72)
317 PF08450 SGL: SMP-30/Gluconola 98.6 9.6E-05 2.1E-09 72.6 30.0 226 248-564 4-244 (246)
318 TIGR01628 PABP-1234 polyadenyl 98.6 9E-08 1.9E-12 106.0 9.0 72 61-133 2-75 (562)
319 KOG1920 IkappaB kinase complex 98.6 3.9E-05 8.5E-10 85.3 28.5 274 204-513 69-345 (1265)
320 KOG1409 Uncharacterized conser 98.6 5.6E-06 1.2E-10 79.2 19.0 330 196-580 17-394 (404)
321 KOG0105 Alternative splicing f 98.6 8.1E-08 1.8E-12 82.6 5.8 74 57-134 4-79 (241)
322 PF06433 Me-amine-dh_H: Methyl 98.6 5E-05 1.1E-09 74.8 25.8 287 225-544 18-329 (342)
323 PF14583 Pectate_lyase22: Olig 98.6 0.00018 4E-09 72.2 30.1 313 230-579 16-380 (386)
324 COG5170 CDC55 Serine/threonine 98.6 2E-06 4.4E-11 80.8 15.1 275 245-578 28-365 (460)
325 TIGR01628 PABP-1234 polyadenyl 98.6 1.5E-07 3.2E-12 104.3 9.1 77 58-136 284-362 (562)
326 TIGR01622 SF-CC1 splicing fact 98.6 1.5E-07 3.3E-12 101.7 8.7 74 58-133 88-163 (457)
327 KOG4208 Nucleolar RNA-binding 98.6 1.7E-07 3.8E-12 82.8 7.1 77 59-136 49-128 (214)
328 PF15492 Nbas_N: Neuroblastoma 98.6 8.9E-05 1.9E-09 69.9 25.3 71 248-340 2-75 (282)
329 COG0724 RNA-binding proteins ( 98.5 1.9E-07 4.1E-12 94.6 8.5 77 59-136 115-193 (306)
330 cd00590 RRM RRM (RNA recogniti 98.5 4.7E-07 1E-11 69.9 8.8 71 61-133 1-73 (74)
331 TIGR03300 assembly_YfgL outer 98.5 6.9E-05 1.5E-09 78.9 27.5 289 215-577 65-376 (377)
332 PRK02888 nitrous-oxide reducta 98.5 3.3E-05 7.1E-10 82.1 24.0 245 317-589 201-483 (635)
333 KOG0125 Ataxin 2-binding prote 98.5 2.1E-07 4.5E-12 87.8 6.8 76 58-136 95-172 (376)
334 PF08450 SGL: SMP-30/Gluconola 98.5 0.00022 4.7E-09 70.0 28.6 227 208-521 4-244 (246)
335 KOG1064 RAVE (regulator of V-A 98.5 7.7E-07 1.7E-11 101.6 11.6 212 329-582 2189-2400(2439)
336 KOG1920 IkappaB kinase complex 98.5 6.3E-05 1.4E-09 83.8 25.9 250 245-538 70-325 (1265)
337 KOG0147 Transcriptional coacti 98.5 1.5E-07 3.3E-12 95.3 5.4 74 62-136 281-356 (549)
338 PF04059 RRM_2: RNA recognitio 98.5 6.9E-07 1.5E-11 71.0 7.5 73 60-132 2-78 (97)
339 PLN02919 haloacid dehalogenase 98.4 0.00011 2.5E-09 86.2 28.2 161 165-341 573-773 (1057)
340 COG5170 CDC55 Serine/threonine 98.4 6.2E-06 1.3E-10 77.7 14.0 257 313-608 31-356 (460)
341 KOG0309 Conserved WD40 repeat- 98.4 3.1E-06 6.7E-11 88.5 12.4 287 165-487 30-340 (1081)
342 KOG1064 RAVE (regulator of V-A 98.4 2.8E-06 6.2E-11 97.1 12.9 211 228-542 2194-2405(2439)
343 PRK02888 nitrous-oxide reducta 98.4 0.00018 3.9E-09 76.6 25.5 95 479-581 297-405 (635)
344 KOG4532 WD40-like repeat conta 98.4 7.6E-05 1.7E-09 69.2 19.7 222 320-565 83-322 (344)
345 KOG0146 RNA-binding protein ET 98.4 3.2E-07 6.9E-12 83.7 4.1 74 58-132 284-359 (371)
346 KOG0309 Conserved WD40 repeat- 98.4 4E-06 8.7E-11 87.7 12.4 285 204-585 25-344 (1081)
347 KOG0144 RNA-binding protein CU 98.4 1.2E-06 2.5E-11 85.9 7.8 83 59-141 34-119 (510)
348 KOG0280 Uncharacterized conser 98.3 0.00013 2.8E-09 68.6 20.3 217 329-578 94-331 (339)
349 KOG0127 Nucleolar protein fibr 98.3 2.6E-06 5.7E-11 86.0 9.5 81 54-135 287-375 (678)
350 PF02897 Peptidase_S9_N: Proly 98.3 0.00044 9.4E-09 73.8 27.3 258 246-540 126-409 (414)
351 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.3 1.7E-06 3.7E-11 93.3 8.5 71 58-134 274-347 (481)
352 KOG3617 WD40 and TPR repeat-co 98.3 1.8E-05 3.8E-10 84.2 15.4 112 247-387 19-131 (1416)
353 KOG0148 Apoptosis-promoting RN 98.3 2.2E-06 4.8E-11 78.8 7.6 68 59-133 164-233 (321)
354 KOG4532 WD40-like repeat conta 98.3 0.00026 5.6E-09 65.8 20.5 222 254-521 83-321 (344)
355 PF06433 Me-amine-dh_H: Methyl 98.3 0.0016 3.6E-08 64.3 27.2 269 275-587 17-328 (342)
356 KOG0127 Nucleolar protein fibr 98.2 2.1E-06 4.5E-11 86.7 6.9 81 59-141 117-199 (678)
357 KOG3914 WD repeat protein WDR4 98.2 2.2E-05 4.8E-10 76.9 13.3 157 406-587 69-231 (390)
358 PF02897 Peptidase_S9_N: Proly 98.2 0.0032 6.9E-08 67.2 31.4 259 313-584 128-408 (414)
359 KOG1832 HIV-1 Vpr-binding prot 98.2 2E-06 4.4E-11 91.5 6.4 148 192-366 1090-1246(1516)
360 TIGR01648 hnRNP-R-Q heterogene 98.2 5.2E-06 1.1E-10 88.9 8.7 68 59-135 233-304 (578)
361 PF13893 RRM_5: RNA recognitio 98.2 7.2E-06 1.6E-10 59.2 6.5 53 75-133 1-54 (56)
362 PF11768 DUF3312: Protein of u 98.1 0.00024 5.3E-09 73.8 19.7 91 432-535 238-329 (545)
363 KOG0144 RNA-binding protein CU 98.1 2E-06 4.3E-11 84.3 4.2 81 59-140 124-207 (510)
364 PF11768 DUF3312: Protein of u 98.1 0.0065 1.4E-07 63.6 29.3 138 431-580 185-329 (545)
365 TIGR03300 assembly_YfgL outer 98.1 0.0035 7.6E-08 66.0 28.6 257 214-532 104-376 (377)
366 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.1 1E-05 2.2E-10 87.3 9.1 68 59-128 394-465 (481)
367 KOG0117 Heterogeneous nuclear 98.1 6.4E-06 1.4E-10 81.3 6.7 72 60-140 260-333 (506)
368 KOG3617 WD40 and TPR repeat-co 98.1 0.0002 4.3E-09 76.6 17.7 301 204-561 16-371 (1416)
369 KOG3914 WD repeat protein WDR4 98.0 3.9E-05 8.4E-10 75.3 11.2 95 226-346 134-231 (390)
370 PF00400 WD40: WD domain, G-be 98.0 4.5E-06 9.8E-11 55.1 3.2 36 195-230 3-39 (39)
371 KOG0131 Splicing factor 3b, su 98.0 8.9E-06 1.9E-10 70.5 5.6 79 55-134 92-173 (203)
372 KOG0882 Cyclophilin-related pe 98.0 0.0002 4.3E-09 71.3 15.3 214 202-489 8-234 (558)
373 KOG0280 Uncharacterized conser 98.0 0.0011 2.5E-08 62.5 19.2 211 240-488 66-286 (339)
374 KOG2695 WD40 repeat protein [G 98.0 3.4E-05 7.3E-10 74.0 9.3 126 202-349 251-387 (425)
375 KOG1645 RING-finger-containing 98.0 0.0014 3E-08 64.6 20.4 89 226-340 175-268 (463)
376 KOG1832 HIV-1 Vpr-binding prot 98.0 5E-06 1.1E-10 88.7 4.0 213 311-563 1104-1319(1516)
377 PF13360 PQQ_2: PQQ-like domai 97.9 0.0042 9E-08 60.6 22.6 94 226-345 5-101 (238)
378 KOG4190 Uncharacterized conser 97.9 8.8E-05 1.9E-09 75.2 10.2 273 245-613 737-1030(1034)
379 COG3490 Uncharacterized protei 97.9 0.0052 1.1E-07 58.1 20.8 141 206-366 70-241 (366)
380 KOG1409 Uncharacterized conser 97.8 0.0028 6E-08 61.3 19.3 236 245-536 26-271 (404)
381 KOG0110 RNA-binding protein (R 97.8 1.2E-05 2.5E-10 84.4 3.7 70 59-128 613-684 (725)
382 KOG2066 Vacuolar assembly/sort 97.8 0.00097 2.1E-08 71.5 17.7 168 204-416 40-222 (846)
383 KOG4190 Uncharacterized conser 97.8 0.00011 2.4E-09 74.6 10.2 168 197-394 729-913 (1034)
384 KOG0109 RNA-binding protein LA 97.8 2E-05 4.2E-10 73.5 4.2 65 61-134 4-70 (346)
385 KOG2114 Vacuolar assembly/sort 97.8 0.0029 6.4E-08 68.4 20.6 220 249-521 29-272 (933)
386 KOG4206 Spliceosomal protein s 97.8 4.7E-05 1E-09 69.0 6.2 65 61-127 11-80 (221)
387 KOG0123 Polyadenylate-binding 97.8 7.1E-05 1.5E-09 76.5 8.2 72 62-137 79-152 (369)
388 KOG3621 WD40 repeat-containing 97.8 0.0069 1.5E-07 64.3 22.6 114 202-339 32-155 (726)
389 KOG0533 RRM motif-containing p 97.8 8.7E-05 1.9E-09 69.8 8.0 84 60-145 84-169 (243)
390 PRK11138 outer membrane biogen 97.8 0.031 6.8E-07 59.1 28.5 69 255-348 120-188 (394)
391 TIGR01642 U2AF_lg U2 snRNP aux 97.8 7.1E-05 1.5E-09 82.3 8.7 75 59-134 409-498 (509)
392 PF04053 Coatomer_WDAD: Coatom 97.7 0.00071 1.5E-08 71.2 15.1 139 402-582 35-175 (443)
393 PF13360 PQQ_2: PQQ-like domai 97.7 0.013 2.9E-07 56.9 23.6 215 275-581 3-231 (238)
394 PF04053 Coatomer_WDAD: Coatom 97.7 0.0086 1.9E-07 63.2 23.1 216 246-535 35-262 (443)
395 KOG3621 WD40 repeat-containing 97.7 0.0062 1.3E-07 64.7 21.5 114 243-388 33-155 (726)
396 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.043 9.3E-07 51.3 24.0 105 216-346 24-131 (354)
397 KOG4212 RNA-binding protein hn 97.7 9.3E-05 2E-09 72.9 7.2 75 61-137 46-123 (608)
398 PF00400 WD40: WD domain, G-be 97.7 0.00015 3.3E-09 47.6 6.2 35 447-484 5-39 (39)
399 KOG1897 Damage-specific DNA bi 97.6 0.1 2.2E-06 58.1 29.6 313 245-608 532-887 (1096)
400 PF06977 SdiA-regulated: SdiA- 97.6 0.012 2.7E-07 56.6 20.6 190 245-473 23-240 (248)
401 PRK13616 lipoprotein LpqB; Pro 97.6 0.014 3E-07 64.2 22.7 192 351-555 350-550 (591)
402 KOG4714 Nucleoporin [Nuclear s 97.6 0.002 4.3E-08 59.9 13.5 176 186-387 72-254 (319)
403 KOG0123 Polyadenylate-binding 97.6 8.9E-05 1.9E-09 75.8 5.4 77 56-134 267-345 (369)
404 PF04841 Vps16_N: Vps16, N-ter 97.6 0.076 1.6E-06 56.1 27.4 58 503-563 217-277 (410)
405 KOG2066 Vacuolar assembly/sort 97.6 0.0017 3.7E-08 69.7 14.6 129 212-368 80-223 (846)
406 KOG0110 RNA-binding protein (R 97.5 0.00035 7.5E-09 73.7 9.1 70 62-133 518-593 (725)
407 KOG0226 RNA-binding proteins [ 97.5 0.00019 4E-09 65.9 6.0 70 58-127 189-260 (290)
408 KOG0146 RNA-binding protein ET 97.5 0.00015 3.2E-09 66.7 5.2 83 58-141 18-103 (371)
409 COG3490 Uncharacterized protei 97.5 0.067 1.4E-06 50.9 22.3 266 236-577 59-345 (366)
410 KOG0124 Polypyrimidine tract-b 97.5 0.0002 4.3E-09 68.8 6.0 73 60-133 211-285 (544)
411 KOG4661 Hsp27-ERE-TATA-binding 97.5 0.00026 5.6E-09 72.1 7.2 81 55-136 401-483 (940)
412 COG3204 Uncharacterized protei 97.5 0.037 8.1E-07 53.1 20.8 167 243-449 85-272 (316)
413 KOG1645 RING-finger-containing 97.5 0.015 3.3E-07 57.6 18.7 239 313-579 198-460 (463)
414 PF04841 Vps16_N: Vps16, N-ter 97.5 0.14 3E-06 54.1 27.8 48 276-338 62-109 (410)
415 KOG1897 Damage-specific DNA bi 97.5 0.3 6.5E-06 54.5 34.0 358 173-580 500-898 (1096)
416 KOG1275 PAB-dependent poly(A) 97.5 0.0017 3.6E-08 70.6 13.2 116 216-361 148-276 (1118)
417 PRK10115 protease 2; Provision 97.4 0.11 2.4E-06 58.7 28.3 249 246-538 129-397 (686)
418 KOG1457 RNA binding protein (c 97.4 0.0011 2.4E-08 59.7 9.7 79 59-137 34-117 (284)
419 PRK13616 lipoprotein LpqB; Pro 97.4 0.011 2.4E-07 64.9 18.9 147 201-366 347-512 (591)
420 PRK10115 protease 2; Provision 97.4 0.16 3.5E-06 57.5 28.4 117 203-338 126-255 (686)
421 PF06977 SdiA-regulated: SdiA- 97.4 0.031 6.7E-07 53.9 19.4 183 403-607 25-239 (248)
422 KOG4714 Nucleoporin [Nuclear s 97.3 0.0034 7.3E-08 58.4 11.7 71 455-536 181-255 (319)
423 KOG0415 Predicted peptidyl pro 97.3 0.00036 7.9E-09 66.9 5.6 82 58-140 238-321 (479)
424 COG3391 Uncharacterized conser 97.3 0.09 2E-06 55.1 23.9 190 204-420 74-273 (381)
425 KOG1275 PAB-dependent poly(A) 97.3 0.0036 7.8E-08 68.1 13.2 149 212-385 184-340 (1118)
426 PRK11138 outer membrane biogen 97.3 0.26 5.6E-06 52.1 27.3 109 215-346 120-231 (394)
427 PF03178 CPSF_A: CPSF A subuni 97.2 0.058 1.2E-06 55.3 21.4 223 226-531 4-261 (321)
428 COG3386 Gluconolactonase [Carb 97.2 0.16 3.5E-06 50.9 23.6 151 208-387 29-193 (307)
429 KOG0120 Splicing factor U2AF, 97.2 0.00025 5.4E-09 73.5 3.5 73 60-133 290-364 (500)
430 KOG2695 WD40 repeat protein [G 97.2 0.0013 2.8E-08 63.5 7.6 125 453-588 252-385 (425)
431 KOG0132 RNA polymerase II C-te 97.1 0.00091 2E-08 71.2 6.7 69 58-133 420-490 (894)
432 KOG2114 Vacuolar assembly/sort 97.1 0.12 2.6E-06 56.6 22.2 225 315-564 30-272 (933)
433 COG3391 Uncharacterized conser 97.1 0.49 1.1E-05 49.6 29.6 204 313-542 78-290 (381)
434 KOG4209 Splicing factor RNPS1, 97.1 0.00096 2.1E-08 63.2 6.0 74 59-134 101-176 (231)
435 KOG4454 RNA binding protein (R 97.1 0.00021 4.6E-09 63.9 1.4 67 59-127 9-77 (267)
436 KOG4212 RNA-binding protein hn 97.0 0.0013 2.9E-08 65.0 6.5 72 56-133 533-606 (608)
437 PF00780 CNH: CNH domain; Int 97.0 0.42 9.1E-06 47.6 25.8 139 213-367 5-153 (275)
438 PF05096 Glu_cyclase_2: Glutam 97.0 0.06 1.3E-06 51.7 17.1 128 235-393 33-163 (264)
439 KOG0882 Cyclophilin-related pe 96.8 0.013 2.8E-07 58.9 11.4 247 241-582 6-307 (558)
440 COG3386 Gluconolactonase [Carb 96.7 0.71 1.5E-05 46.4 22.7 228 314-565 30-275 (307)
441 KOG4640 Anaphase-promoting com 96.7 0.0077 1.7E-07 63.2 8.8 76 204-291 21-100 (665)
442 PF05096 Glu_cyclase_2: Glutam 96.7 0.6 1.3E-05 45.0 20.8 180 206-422 47-253 (264)
443 KOG4205 RNA-binding protein mu 96.6 0.0014 3E-08 64.7 3.2 58 58-115 5-64 (311)
444 PF10647 Gmad1: Lipoprotein Lp 96.6 0.78 1.7E-05 44.9 24.1 155 352-522 25-185 (253)
445 KOG1008 Uncharacterized conser 96.6 0.0012 2.6E-08 68.9 2.5 183 172-386 70-274 (783)
446 KOG1548 Transcription elongati 96.6 0.0091 2E-07 57.8 8.0 79 56-136 131-219 (382)
447 KOG4660 Protein Mei2, essentia 96.5 0.0024 5.2E-08 65.8 3.7 63 60-127 76-140 (549)
448 PF10647 Gmad1: Lipoprotein Lp 96.5 0.37 8.1E-06 47.1 18.9 158 402-582 26-199 (253)
449 PF15390 DUF4613: Domain of un 96.4 0.089 1.9E-06 55.3 14.6 120 348-486 54-186 (671)
450 PF05694 SBP56: 56kDa selenium 96.4 1.4 3E-05 45.4 23.0 238 320-565 86-393 (461)
451 KOG4640 Anaphase-promoting com 96.4 0.013 2.9E-07 61.5 8.7 90 453-555 20-115 (665)
452 PF05694 SBP56: 56kDa selenium 96.3 1.5 3.4E-05 45.1 23.9 236 254-522 86-393 (461)
453 KOG0109 RNA-binding protein LA 96.3 0.0052 1.1E-07 57.8 4.4 70 56-134 75-146 (346)
454 KOG4205 RNA-binding protein mu 96.3 0.0029 6.3E-08 62.4 2.9 58 58-115 96-155 (311)
455 PF00780 CNH: CNH domain; Int 96.3 1.4 3.1E-05 43.8 25.9 233 253-548 5-268 (275)
456 KOG2079 Vacuolar assembly/sort 96.2 0.061 1.3E-06 60.2 12.6 102 214-338 98-203 (1206)
457 COG3204 Uncharacterized protei 96.2 0.31 6.7E-06 47.0 15.7 152 200-367 82-249 (316)
458 smart00320 WD40 WD40 repeats. 96.2 0.0066 1.4E-07 38.7 3.4 36 195-230 4-40 (40)
459 KOG2377 Uncharacterized conser 96.1 0.63 1.4E-05 47.4 18.2 138 161-325 24-169 (657)
460 KOG1008 Uncharacterized conser 96.1 0.0021 4.6E-08 67.2 1.1 148 449-605 98-259 (783)
461 KOG0106 Alternative splicing f 96.1 0.0055 1.2E-07 56.5 3.6 60 61-128 3-64 (216)
462 PF15390 DUF4613: Domain of un 96.1 2.6 5.6E-05 44.9 26.1 155 203-389 19-188 (671)
463 PF08596 Lgl_C: Lethal giant l 96.0 2.5 5.4E-05 44.2 25.4 97 468-581 228-336 (395)
464 KOG1995 Conserved Zn-finger pr 95.9 0.0098 2.1E-07 58.2 4.7 81 56-137 63-153 (351)
465 KOG4211 Splicing factor hnRNP- 95.9 0.019 4.2E-07 58.4 6.7 60 58-118 102-164 (510)
466 PF08553 VID27: VID27 cytoplas 95.8 0.54 1.2E-05 52.9 18.2 135 376-534 501-646 (794)
467 KOG0116 RasGAP SH3 binding pro 95.6 0.022 4.7E-07 58.7 6.1 70 61-134 290-363 (419)
468 KOG2280 Vacuolar assembly/sort 95.6 4.5 9.7E-05 44.4 24.2 101 503-614 217-320 (829)
469 PF03178 CPSF_A: CPSF A subuni 95.5 3.3 7.2E-05 42.3 27.6 182 330-535 2-202 (321)
470 KOG1457 RNA binding protein (c 95.5 0.013 2.8E-07 53.0 3.2 63 60-125 211-274 (284)
471 PF11608 Limkain-b1: Limkain b 95.2 0.057 1.2E-06 41.0 5.5 68 60-133 3-72 (90)
472 PF14783 BBS2_Mid: Ciliary BBS 95.1 0.59 1.3E-05 38.3 11.4 65 246-338 2-71 (111)
473 KOG4211 Splicing factor hnRNP- 95.0 0.049 1.1E-06 55.6 6.2 58 59-118 10-68 (510)
474 KOG4307 RNA binding protein RB 95.0 0.079 1.7E-06 56.2 7.6 75 56-132 863-941 (944)
475 cd00216 PQQ_DH Dehydrogenases 94.9 7.3 0.00016 42.4 26.8 77 255-348 61-138 (488)
476 COG1770 PtrB Protease II [Amin 94.8 7.6 0.00016 42.3 27.3 212 246-489 131-351 (682)
477 PF07995 GSDH: Glucose / Sorbo 94.8 5.6 0.00012 40.8 25.5 245 313-574 6-329 (331)
478 COG5290 IkappaB kinase complex 94.8 0.34 7.4E-06 52.6 11.7 102 246-364 249-350 (1243)
479 PF14783 BBS2_Mid: Ciliary BBS 94.7 2 4.4E-05 35.2 13.6 65 456-535 2-71 (111)
480 PF12894 Apc4_WD40: Anaphase-p 94.7 0.12 2.5E-06 35.2 5.4 33 245-288 13-45 (47)
481 COG5175 MOT2 Transcriptional r 94.7 0.082 1.8E-06 50.9 6.4 67 60-128 115-194 (480)
482 PF14761 HPS3_N: Hermansky-Pud 94.7 3.7 8E-05 38.2 17.7 52 320-372 28-81 (215)
483 smart00320 WD40 WD40 repeats. 94.6 0.089 1.9E-06 33.0 4.9 33 449-484 8-40 (40)
484 PF12894 Apc4_WD40: Anaphase-p 94.4 0.1 2.2E-06 35.5 4.6 34 546-584 12-45 (47)
485 PF14870 PSII_BNR: Photosynthe 94.4 4.1 8.9E-05 40.7 17.9 148 199-367 140-292 (302)
486 KOG0147 Transcriptional coacti 94.3 0.027 5.8E-07 58.2 2.5 73 59-133 179-253 (549)
487 cd00216 PQQ_DH Dehydrogenases 94.2 10 0.00022 41.3 26.7 29 513-544 405-433 (488)
488 KOG4206 Spliceosomal protein s 94.1 0.14 3.1E-06 46.9 6.5 73 56-133 143-217 (221)
489 KOG2395 Protein involved in va 94.1 1.1 2.3E-05 46.8 13.2 107 206-338 378-500 (644)
490 KOG2079 Vacuolar assembly/sort 94.0 0.17 3.6E-06 56.9 7.9 64 200-264 127-196 (1206)
491 TIGR02604 Piru_Ver_Nterm putat 94.0 2.9 6.2E-05 43.7 16.9 157 402-564 16-202 (367)
492 COG5290 IkappaB kinase complex 93.8 3 6.4E-05 45.8 16.2 54 313-369 206-265 (1243)
493 KOG4499 Ca2+-binding protein R 93.7 6.1 0.00013 37.0 18.3 48 459-513 217-264 (310)
494 TIGR02604 Piru_Ver_Nterm putat 93.6 1.3 2.9E-05 46.2 13.7 147 454-608 14-202 (367)
495 PF07569 Hira: TUP1-like enhan 93.5 3.4 7.4E-05 39.3 14.9 64 508-580 16-95 (219)
496 PF07995 GSDH: Glucose / Sorbo 93.4 10 0.00023 38.8 23.8 47 207-254 5-59 (331)
497 PF08553 VID27: VID27 cytoplas 93.2 1.7 3.6E-05 49.1 13.9 96 217-338 545-647 (794)
498 KOG4660 Protein Mei2, essentia 93.1 0.11 2.4E-06 54.1 4.4 52 85-136 417-468 (549)
499 KOG0153 Predicted RNA-binding 92.8 0.53 1.2E-05 46.1 8.1 71 59-137 228-301 (377)
500 COG1506 DAP2 Dipeptidyl aminop 92.7 21 0.00045 40.3 25.7 277 246-565 15-330 (620)
No 1
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-106 Score=786.75 Aligned_cols=646 Identities=46% Similarity=0.853 Sum_probs=590.3
Q ss_pred CCCCCCCCcccc---ccccccccCCCCcEEEECCCCCCChhhHHHhHhc-------ccc-ccEEeecCCCCCceeeEEEE
Q 005315 36 DLGIISDDEDVY---EDDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGV-------IKE-DGLWMPVDPETQKSLGYCFI 104 (702)
Q Consensus 36 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~lp~~~~~~~~~l~~~-------~~~-~~~~~~~d~~~~~~~g~~fv 104 (702)
+|.+.-+|+++- .+..|..+.+++++|+|+|+|+|+++++++|..+ +|+ +++++|.|+ .|.++||+|+
T Consensus 32 ~fvd~v~de~l~~Dll~k~p~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~ 110 (698)
T KOG2314|consen 32 GFVDDVDDEDLVGDLLEKRPVTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFV 110 (698)
T ss_pred ccccccchhhhhhHHHhhCcCccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEE
Confidence 455555555431 2666666679999999999999999999998873 455 799999998 4559999999
Q ss_pred EeCCHHHHHHHHHHhCCCccCCeeEEEEEeccCcccccCCCCCCCCCCCCCCCCCccccccccCCCCCceEEEEeCCce-
Q 005315 105 EYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDT- 183 (702)
Q Consensus 105 ~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 183 (702)
+|.+..+|+.|++.|||++||++|+|.|+.|.|+++|..++++|.+|..++|++.++|++||+|+++||||++..+...
T Consensus 111 E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f~d~eky~s~~dew~~pe~q~fk~~~~L~~WL~d~~~RDQf~v~~d~~~~ 190 (698)
T KOG2314|consen 111 EYASMRDAKKAVKSLNGKRLDKNHTFFVRLFKDFEKYESISDEWREPEKQTFKDSSDLRSWLMDDKCRDQFVVQDDVKTT 190 (698)
T ss_pred EecChhhHHHHHHhcccceecccceEEeehhhhHHHhcCCccccCCcccccccchHHHHHHHhCccccceEEEEecCcce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred -EEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEc
Q 005315 184 -EVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYS 262 (702)
Q Consensus 184 -~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s 262 (702)
.++||. ....+...-.+.+|+.+++.|||.|+||+|.+..||.+|++. ++.++.+|.|++|..+.|||+++||+|.+
T Consensus 191 ~svfwN~-~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~GI~lWGG~-~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s 268 (698)
T KOG2314|consen 191 VSVFWNS-KFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQGIALWGGE-SFDRIQRFYHPGVQFIDFSPNEKYLVTYS 268 (698)
T ss_pred eEEEccc-cCCchhhhhhhhcceeeeEEecCCceEEEEEeccceeeecCc-cHHHHHhccCCCceeeecCCccceEEEec
Confidence 789998 455777788899999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCCCC-cCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcc
Q 005315 263 SHEPSNP-RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFT 341 (702)
Q Consensus 263 ~d~~~~~-~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~ 341 (702)
..+...+ .+.....++|||+.+|...++|....... ..||.++||. |++|+|+...+.|.||+.+++.
T Consensus 269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~----------~~WP~frWS~-DdKy~Arm~~~sisIyEtpsf~ 337 (698)
T KOG2314|consen 269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY----------LKWPIFRWSH-DDKYFARMTGNSISIYETPSFM 337 (698)
T ss_pred CCccccCcccCCCceEEEEEccccchhcceeccCCCc----------cccceEEecc-CCceeEEeccceEEEEecCcee
Confidence 8765543 23344689999999999999998754332 3499999999 9999999999999999999999
Q ss_pred cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccc
Q 005315 342 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 421 (702)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 421 (702)
++..+.++.++|.+++|||.++.||+|+|+. .+.++++.++++|+++.++.++++++.+|+++|+.+|.|||+.++++
T Consensus 338 lld~Kslki~gIr~FswsP~~~llAYwtpe~--~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~ 415 (698)
T KOG2314|consen 338 LLDKKSLKISGIRDFSWSPTSNLLAYWTPET--NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRH 415 (698)
T ss_pred eecccccCCccccCcccCCCcceEEEEcccc--cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEee
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccc-ccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc
Q 005315 422 TKTK-KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL 500 (702)
Q Consensus 422 ~~~~-~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~ 500 (702)
+|++ ++.++++.||+++++.+|+..+.+ ...|..++|.|.|+.|++.++...++++++|.+++.. .+..++..+
T Consensus 416 tK~~~~g~f~n~eIfrireKdIpve~vel---ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~ 490 (698)
T KOG2314|consen 416 TKSKVKGQFSNLEIFRIREKDIPVEVVEL---KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI--KKPSLVKEL 490 (698)
T ss_pred ccccccceEeeEEEEEeeccCCCceeeec---chheeeeeeccCCCeEEEEEccccccceeEEEeecCC--Cchhhhhhh
Confidence 9986 899999999999999999999999 9999999999999999999998777899999998532 345677888
Q ss_pred CCCceeEEEEccCCCEEEEEeccCCCceEEEEECC--CcceeeecccCceeeeEECCCCCEEEEEEee-cccccccEEEE
Q 005315 501 KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--ELETMATAEHFMATDVEWDPTGRYVATAVTS-VHEMENGFNIW 577 (702)
Q Consensus 501 ~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~--~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~-~~~~d~~v~iw 577 (702)
....++.+.|||.|+++++++..+..|.+.++|++ +.+.+....|...+.+.|+|.|||++++++. +|..|++++||
T Consensus 491 dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~ 570 (698)
T KOG2314|consen 491 DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIF 570 (698)
T ss_pred cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEE
Confidence 88889999999999999999887678999999998 6777778889999999999999999999998 88899999999
Q ss_pred EeccceeeeeccccEeeEEEeeCCCCCCChhhHHHHHHHHHHHhHhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005315 578 SFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEW 657 (702)
Q Consensus 578 ~~~g~~l~~~~~~~i~~~~w~p~~~~l~s~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (702)
+++|+++.....+.+.++.|+|+++.++|....++||||||+|+++|+++|+++...++++..++||++|++|.+||++.
T Consensus 571 tfqGrll~~~~i~~f~qF~WRPRPps~LS~e~~KkIkKnLKky~a~FeeqD~~e~~~AsrElvekrRqlm~~f~~yR~~~ 650 (698)
T KOG2314|consen 571 TFQGRLLKEDIIDRFKQFLWRPRPPSLLSEEKQKKIKKNLKKYSAQFEEQDRLEQSRASRELVEKRRQLMEQFTEYREKI 650 (698)
T ss_pred EeecHHHHHHHHHHHHhhccCCCCCcccCHHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccc-eEEEeEEEEeEEeeEEEeeC
Q 005315 658 KRLHEEEKMERQMLRDGEASDEEEE-YEAKEVEVEEVLDVTEEVEE 702 (702)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ee~~~~~ee~~~ 702 (702)
.+++.+++.++..++++++.|+.++ .+..+|+++|.++++||+.+
T Consensus 651 ~~~~~eek~~r~~lr~~vdtd~~~~~~e~veEei~e~le~tee~~~ 696 (698)
T KOG2314|consen 651 IEEMAEEKSERIKLRGGVDTDALDDEFETVEEEIEEFLEVTEEKVP 696 (698)
T ss_pred HHHHHHhhcceeeecCCCCchhhhcchhhHHHHHHHHhhccccccc
Confidence 9999999999999999999876655 56677777888888887754
No 2
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=100.00 E-value=1.4e-49 Score=387.12 Aligned_cols=502 Identities=30% Similarity=0.554 Sum_probs=412.6
Q ss_pred ceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCCCeeEEEec
Q 005315 173 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFS 252 (702)
Q Consensus 173 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~fS 252 (702)
+||++.++..+.++|+. ........+....|++.+++|||.|+||++.+..+|.+|++. .+..+.++.|+.|..+.||
T Consensus 3 sQF~~~~s~~i~~f~~~-~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~-~~~~l~~~~~~~V~~~~fS 80 (561)
T COG5354 3 SQFPLDYSAVISVFWNS-QSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGP-SKAKLVRFRHPDVKYLDFS 80 (561)
T ss_pred ceeeeeccceEEEeecC-ccccccccccccCcchhheeecCcchheehhhccceEEcccc-chhheeeeecCCceecccC
Confidence 79999999999999998 566666777778999999999999999999999999999999 8889999999999999999
Q ss_pred CCCCEEEEEcCCCCCCCc-----CCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe
Q 005315 253 PGEKYLVTYSSHEPSNPR-----DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 327 (702)
Q Consensus 253 pdg~~l~t~s~d~~~~~~-----~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~ 327 (702)
|.|+||+|.+..+...|. ......+.|||+.+|..+..|.+..... +-||.++||. +++|+|..
T Consensus 81 P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~----------~~Wp~~k~s~-~D~y~ARv 149 (561)
T COG5354 81 PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY----------LGWPVLKFSI-DDKYVARV 149 (561)
T ss_pred cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc----------cccceeeeee-cchhhhhh
Confidence 999999999988663332 1222369999999999999998876652 2399999999 99999999
Q ss_pred cCCeEEEEec-CCcccccceeeccCCeeEEEeCCC--CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccce
Q 005315 328 GKNMISVYET-ESFTLIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 404 (702)
Q Consensus 328 ~d~~i~v~d~-~~~~~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 404 (702)
....++|+++ .+........+...++.+++|||. +..||+|+|+. .+.++.+.++.++....+..++++.++.|+
T Consensus 150 v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk--~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 150 VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEK--LNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEcccc--CCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 9999999995 333444444566778999999997 45689999999 999999999999999999999999999999
Q ss_pred eEEccCCCEEEEEEccccccccccc--ccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEE
Q 005315 405 MYWQSSGDYLAVKVDRYTKTKKSTY--TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 482 (702)
Q Consensus 405 ~~~s~~g~~l~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 482 (702)
+.|++.|++|++....++++++++| +++.|+++.+.++++.. .+ .++|++++|+|.++.|+++++-.+. .+.+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~---~~pVhdf~W~p~S~~F~vi~g~~pa-~~s~ 302 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DL---KDPVHDFTWEPLSSRFAVISGYMPA-SVSV 302 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cc---cccceeeeecccCCceeEEeccccc-ceee
Confidence 9999999999999999999999999 68888888888877654 44 8999999999999999999975443 7889
Q ss_pred EEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee-ecccCceeeeEECCCCCEEE
Q 005315 483 YSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-TAEHFMATDVEWDPTGRYVA 561 (702)
Q Consensus 483 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~-~~~~~~i~~~~~spdg~~l~ 561 (702)
++++.. ....++...-+.+.|||.++++++++.++..|.+.+||..+.-.+. .......+.+.|||||+|+.
T Consensus 303 ~~lr~N-------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~ 375 (561)
T COG5354 303 FDLRGN-------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYD 375 (561)
T ss_pred cccccc-------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEE
Confidence 998532 6677777888999999999999999998889999999998655555 56667778899999999999
Q ss_pred EEEee-cccccccEEEEEeccceeeee----------------------------------------ccccEeeEEEeeC
Q 005315 562 TAVTS-VHEMENGFNIWSFNGKLLYRT----------------------------------------LKDHFFQFLWRPR 600 (702)
Q Consensus 562 t~s~~-~~~~d~~v~iw~~~g~~l~~~----------------------------------------~~~~i~~~~w~p~ 600 (702)
+...+ +.+.|+.+.||++.|..+... ..+....++|+|.
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p~~~~~ttsSs~~~h~~~~~~~~~k~~Ga~~~e~~rg~~k~Fa~r~~ 455 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDPSGQYVTTSSSCPKHKVEHGYKIFKIAGALYPEEARGGFKNFAWRPE 455 (561)
T ss_pred ecCCCcccccCcceEEEEecCchhhhhhhccccCCcccceeeccCCCCccccccccccccccccChhhhcccceeEEecC
Confidence 99887 668899999999987543300 0134566899999
Q ss_pred CCCCCChhhHHHHHHHHHHHhHhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 005315 601 PPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASDEE 680 (702)
Q Consensus 601 ~~~l~s~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (702)
...+++....+++++.++++...+++.+.+....+.+...-+++++.++|.+++.+. +.+......|.-....+.....
T Consensus 456 ~p~~lt~~~~~K~~~~~~~~~~~~~k~~~~~~dsa~r~s~p~~ke~~~q~~e~s~e~-ki~sl~~~lRaIe~lker~~~~ 534 (561)
T COG5354 456 PPSKLTIESAKKYVKPSRHRFVPFEKAVIMEADSANRSSAPRKKELVEQWPEYSDED-KIRSLLKKLRAIEALKERMRSG 534 (561)
T ss_pred CCccCChhhhhhcccchhhhccccccccccccccccccccchhhcccccccccCHHH-HHHHHHHHhhhhhcchhhcccc
Confidence 999999999999999999999999999998888888888889999999999998877 3333333333322222222223
Q ss_pred cceEEEe----EEEEeEEeeEEEeeC
Q 005315 681 EEYEAKE----VEVEEVLDVTEEVEE 702 (702)
Q Consensus 681 ~~~~~~~----~~~ee~~~~~ee~~~ 702 (702)
++.|.++ +..|+|+.|.++.+|
T Consensus 535 eele~~qv~kietee~VlsElk~lve 560 (561)
T COG5354 535 EELEVIQVNKIETEEEVLSELKELVE 560 (561)
T ss_pred cchhhhhhhhhhhHHHHHHHhhhccC
Confidence 3344444 566677766655543
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-42 Score=320.50 Aligned_cols=329 Identities=19% Similarity=0.299 Sum_probs=263.5
Q ss_pred CCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCc
Q 005315 194 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPR 270 (702)
Q Consensus 194 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~ 270 (702)
.+...+.+|..+|.|++|||+|++||+|+.|. +++||.. +..++++. .|.. |.|++|||||+.||+|+.+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~-TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~d------ 178 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLD-TETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD------ 178 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccC-CCCcceeecCCccEEEEEEECCCcchhhccccC------
Confidence 34456789999999999999999999999998 8899999 77777776 3554 9999999999999999999
Q ss_pred CCCccEEEEEEccCCcE-EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceee
Q 005315 271 DANRVVINIFDVRTGKV-MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 348 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~ 348 (702)
|.|++||..+|++ .+.|.+|...+ +++.|..+-..| ..++||+++ ||.++|||+..+..+.....
T Consensus 179 ----g~I~lwdpktg~~~g~~l~gH~K~I--------t~Lawep~hl~p-~~r~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 179 ----GSIRLWDPKTGQQIGRALRGHKKWI--------TALAWEPLHLVP-PCRRLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred ----CeEEEecCCCCCcccccccCcccce--------eEEeecccccCC-CccceecccCCCCEEEEEccCceEEEEecc
Confidence 9999999988875 57888888765 334443344455 778999999 99999999999988888889
Q ss_pred ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec--cccccee---------EEccCC------
Q 005315 349 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF--SVSDCKM---------YWQSSG------ 411 (702)
Q Consensus 349 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~---------~~s~~g------ 411 (702)
|...|+++.|-.+| +|++ ++.|.++++|...- +...+....+ -++.+.+ +|.|.|
T Consensus 246 HT~~VTCvrwGG~g-liyS-----gS~DrtIkvw~a~d--G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 246 HTASVTCVRWGGEG-LIYS-----GSQDRTIKVWRALD--GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred CccceEEEEEcCCc-eEEe-----cCCCceEEEEEccc--hhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 99999999997654 5666 77888877765433 2211111100 0000000 233333
Q ss_pred -------------------CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEE
Q 005315 412 -------------------DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 472 (702)
Q Consensus 412 -------------------~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 472 (702)
..|++++++.+ +.+|+-.....|+ ..+.+|..-|+.+.||||++++|+++
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~t---------lflW~p~~~kkpi--~rmtgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFT---------LFLWNPFKSKKPI--TRMTGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCce---------EEEecccccccch--hhhhchhhheeeEEECCCccEEEEee
Confidence 45888888877 6777765544443 35679999999999999999999999
Q ss_pred cCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCce
Q 005315 473 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMA 548 (702)
Q Consensus 473 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i 548 (702)
-|. .|++|+.++++ .+.++.+| .|+.++||.|.++|++++. |.+|++|++.+.++... +|...|
T Consensus 387 FDk---SVkLW~g~tGk------~lasfRGHv~~VYqvawsaDsRLlVS~Sk---DsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 387 FDK---SVKLWDGRTGK------FLASFRGHVAAVYQVAWSADSRLLVSGSK---DSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred ccc---ceeeeeCCCcc------hhhhhhhccceeEEEEeccCccEEEEcCC---CceEEEEEeeeeeecccCCCCCceE
Confidence 999 99999999887 67788877 7999999999999999998 99999999998777654 577899
Q ss_pred eeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 549 TDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 549 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
.++.|+|||+.+++++. |..+++|.
T Consensus 455 f~vDwspDG~rV~sggk-----dkv~~lw~ 479 (480)
T KOG0271|consen 455 FAVDWSPDGQRVASGGK-----DKVLRLWR 479 (480)
T ss_pred EEEEecCCCceeecCCC-----ceEEEeec
Confidence 99999999999999999 99999995
No 4
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-38 Score=309.59 Aligned_cols=402 Identities=25% Similarity=0.448 Sum_probs=330.5
Q ss_pred ceEEEEeCCceEEEecCCCCCCCcccccCC--CcccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCCCeeEEE
Q 005315 173 DQFVIRSGTDTEVLWNDARHLKPEPVYKRS--YWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLID 250 (702)
Q Consensus 173 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~ 250 (702)
.+|+++++.+.. +|+.+........+... ..+++..++|++|+++|.+..+.+.|++.. ....+.+.....+.++.
T Consensus 3 ~~~aVRsSe~~~-l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~-~~~~~lt~~~~~~~~L~ 80 (566)
T KOG2315|consen 3 LVYAVRSSEGFY-LFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQVVKVFEIA-TLKVVLCVELKKTYDLL 80 (566)
T ss_pred ceEEEEccceeE-EeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCCeEEEEEcc-CCcEEEEeccceeeeee
Confidence 367888877766 88875545554555432 445778999999999999999999999988 55444444333899999
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCC
Q 005315 251 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKN 330 (702)
Q Consensus 251 fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~ 330 (702)
|||.|.||.|...-....+.......+.+|++.++.....+......- | +++||. |+.+.|....+
T Consensus 81 fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~------------W-~~qfs~-dEsl~arlv~n 146 (566)
T KOG2315|consen 81 FSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG------------W-VPQFSI-DESLAARLVSN 146 (566)
T ss_pred ecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC------------c-cccccc-chhhhhhhhcc
Confidence 999999999987665555555555679999999966555554433322 7 689999 99999999999
Q ss_pred eEEEEecCCcccccceeeccCCeeEEEeCCC--CCeEEEEeecCCCCCCCcEEEEEecCC---cceeeeeeeccccccee
Q 005315 331 MISVYETESFTLIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPS---KEELRQKNLFSVSDCKM 405 (702)
Q Consensus 331 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~ 405 (702)
.+++|++.+.+....+ ++..++..+.+||. -.++|+++|+. ++.+..+.+|..+. ...+..++++..+.+.|
T Consensus 147 ev~f~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~vAvyvPe~--kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm 223 (566)
T KOG2315|consen 147 EVQFYDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFVAVYVPEK--KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQM 223 (566)
T ss_pred eEEEEecCCccceeee-eeccceeeEEecCCCCCceEEEEccCC--CCCCcEEEEeccccccccchhhhccccccceeEE
Confidence 9999999986665443 78889999999997 46899999988 77777777777762 34678899999999999
Q ss_pred EEccCCCEE-EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEE
Q 005315 406 YWQSSGDYL-AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 484 (702)
Q Consensus 406 ~~s~~g~~l-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 484 (702)
.|++-|.-| +..+.+-.+++++||++..||.+...+. ...+.+ ...++|+++.|+|+|+.|+++.+-.+. .+.|||
T Consensus 224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPA-kvtifn 300 (566)
T KOG2315|consen 224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPA-KVTIFN 300 (566)
T ss_pred EeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-eEEEec-CCCCCceEEEECCCCCEEEEEEecccc-eEEEEc
Confidence 999999854 4466677789999999999998887632 233445 348999999999999999999997665 899999
Q ss_pred eecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEE
Q 005315 485 MRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAV 564 (702)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s 564 (702)
++ +.++..+..++.+++.|||.|++|+++|.|+..|.+.|||+.+.+++.+......+-+.|+|||+||+|++
T Consensus 301 lr-------~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 301 LR-------GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred CC-------CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEe
Confidence 84 34899999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred ee-cccccccEEEEEeccceeeeeccc-cEeeEEEeeCCCC
Q 005315 565 TS-VHEMENGFNIWSFNGKLLYRTLKD-HFFQFLWRPRPPS 603 (702)
Q Consensus 565 ~~-~~~~d~~v~iw~~~g~~l~~~~~~-~i~~~~w~p~~~~ 603 (702)
.+ +++.||+++||++.|..++..+.. .++++.|+|...-
T Consensus 374 TaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~P~~~~ 414 (566)
T KOG2315|consen 374 TAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWRPFNDK 414 (566)
T ss_pred ccccEEecCCeEEEEecCceeehhhhhHhHhheeeeecCCc
Confidence 99 889999999999999999998877 5999999986553
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-39 Score=302.52 Aligned_cols=310 Identities=17% Similarity=0.295 Sum_probs=260.4
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 324 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~l 324 (702)
.|.|++|||+|++||+|+.| .++++||+.+..++.+.++|..-+. |++||| ||+.|
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD----------~TvR~WD~~TeTp~~t~KgH~~WVl-------------cvawsP-Dgk~i 172 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGD----------TTVRLWDLDTETPLFTCKGHKNWVL-------------CVAWSP-DGKKI 172 (480)
T ss_pred cEEEEEecCCCceEEecCCC----------ceEEeeccCCCCcceeecCCccEEE-------------EEEECC-Ccchh
Confidence 49999999999999999999 9999999999999999999998774 899999 99999
Q ss_pred EEec-CCeEEEEecCCcccccc-eeeccCCeeEEEeCCC-----CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee
Q 005315 325 AKLG-KNMISVYETESFTLIDK-KSLKVENVMDFSWSPT-----DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 397 (702)
Q Consensus 325 a~~~-d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~sp~-----~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 397 (702)
|+++ +|+|.+||..+++.+.. +..|...|.+++|.|- .++||+ ++.|+.++|| ++..+..+.....
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las-----~skDg~vrIW--d~~~~~~~~~lsg 245 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS-----SSKDGSVRIW--DTKLGTCVRTLSG 245 (480)
T ss_pred hccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceec-----ccCCCCEEEE--EccCceEEEEecc
Confidence 9999 99999999998876643 5678888999999774 668888 7788887765 4555556666666
Q ss_pred cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEe-----------eCCc
Q 005315 398 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE-----------PKGH 466 (702)
Q Consensus 398 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s-----------p~g~ 466 (702)
+.....++.|.-+| ++++++.+.+ +++|+..... ....+.+|...|+.++.| |.++
T Consensus 246 HT~~VTCvrwGG~g-liySgS~Drt---------Ikvw~a~dG~---~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 246 HTASVTCVRWGGEG-LIYSGSQDRT---------IKVWRALDGK---LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred CccceEEEEEcCCc-eEEecCCCce---------EEEEEccchh---HHHhhcccchheeeeeccchhhhhccccccccc
Confidence 77777788887665 7788888877 8899876521 124577899999998776 3343
Q ss_pred -------------------------EEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEE
Q 005315 467 -------------------------RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVL 519 (702)
Q Consensus 467 -------------------------~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~ 519 (702)
++++++.|. ++.+|+..... +++..+.+| -|+++.|||||+++|+
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~---tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF---TLFLWNPFKSK-----KPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCc---eEEEecccccc-----cchhhhhchhhheeeEEECCCccEEEE
Confidence 499999998 99999975433 266667666 4899999999999999
Q ss_pred EeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee---ccccEee
Q 005315 520 AGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LKDHFFQ 594 (702)
Q Consensus 520 ~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~---~~~~i~~ 594 (702)
++. |..|++|+-.+|+.+.+ +|-..|..++||.|.|.|++++. |.++++|++..+.+... |.+.++.
T Consensus 385 aSF---DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~Sk-----DsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 385 ASF---DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSK-----DSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred eec---ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCC-----CceEEEEEeeeeeecccCCCCCceEEE
Confidence 999 99999999999999986 57799999999999999999999 99999999998776654 5689999
Q ss_pred EEEeeCCCCCCChhhHHHHH
Q 005315 595 FLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 595 ~~w~p~~~~l~s~~~d~~i~ 614 (702)
+.|+|+|..+++++.|+.+|
T Consensus 457 vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 457 VDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred EEecCCCceeecCCCceEEE
Confidence 99999999999999887654
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.7e-36 Score=286.77 Aligned_cols=275 Identities=17% Similarity=0.309 Sum_probs=244.0
Q ss_pred CCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCcCCCcc
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPRDANRV 275 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~i~fSpd--g~~l~t~s~d~~~~~~~~~~~ 275 (702)
+...++..+.||+|++.||||+-+| ++||+.+ +...+..| +|. .|.++.|+|. +..|||++.| |
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~-~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D----------g 241 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP-QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD----------G 241 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecC-CcceeEEEeccccceeeEEEccCCCccceeeeccC----------C
Confidence 5567899999999999999999999 7799999 77777777 344 5999999997 6789999999 9
Q ss_pred EEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCee
Q 005315 276 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVM 354 (702)
Q Consensus 276 ~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~ 354 (702)
++++|++.+..++..+.+|...+. .++|+| +|+||++++ |.+-++||+.++..+-....|..+|.
T Consensus 242 tvklw~~~~e~~l~~l~gH~~RVs-------------~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~ 307 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLEGHLARVS-------------RVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVF 307 (459)
T ss_pred ceeeeccCCCcchhhhhcchhhhe-------------eeeecC-CCceeeecccccchhhcccccchhhHhhcccccccc
Confidence 999999988899999999987764 789999 999999999 99999999999988777778999999
Q ss_pred EEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEE
Q 005315 355 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 434 (702)
Q Consensus 355 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 434 (702)
+++|.|||..+++ ||-|..++||.+.. |+.
T Consensus 308 ~iaf~~DGSL~~t-----GGlD~~~RvWDlRt------------------------gr~--------------------- 337 (459)
T KOG0272|consen 308 SIAFQPDGSLAAT-----GGLDSLGRVWDLRT------------------------GRC--------------------- 337 (459)
T ss_pred eeEecCCCceeec-----cCccchhheeeccc------------------------CcE---------------------
Confidence 9999999999999 88888888776432 111
Q ss_pred EEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEcc
Q 005315 435 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSP 512 (702)
Q Consensus 435 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~sp 512 (702)
.+.+.+|...|.+++|+|+|..+|+++.|+ +++|||++... .+.+++.| -|+.+.|+|
T Consensus 338 -----------im~L~gH~k~I~~V~fsPNGy~lATgs~Dn---t~kVWDLR~r~------~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 338 -----------IMFLAGHIKEILSVAFSPNGYHLATGSSDN---TCKVWDLRMRS------ELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred -----------EEEecccccceeeEeECCCceEEeecCCCC---cEEEeeecccc------cceecccccchhhheEecc
Confidence 134568899999999999999999999999 99999997654 57888877 489999999
Q ss_pred -CCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 513 -SGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 513 -dg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
.|.+|++++. |++++||...++.++.+ +|...|.++..+|||+++++++. |+++++|.
T Consensus 398 ~~g~fL~Tasy---D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~-----DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASY---DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF-----DRTIKLWR 458 (459)
T ss_pred cCCeEEEEccc---CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc-----Cceeeecc
Confidence 7899999999 99999999999998876 78899999999999999999999 99999995
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.9e-34 Score=277.74 Aligned_cols=394 Identities=16% Similarity=0.240 Sum_probs=281.2
Q ss_pred CCceEEEEeCCceEE-EecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec----CC
Q 005315 171 ARDQFVIRSGTDTEV-LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA----HP 244 (702)
Q Consensus 171 ~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~----~~ 244 (702)
.|...++++++...+ ++.. .+++....+..|..-|+|+.|||||.++|+++.|+ +.|||+. +++.+..+. |.
T Consensus 158 sRPfRi~T~sdDn~v~ffeG-PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk-tge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 158 SRPFRIATGSDDNTVAFFEG-PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK-TGEKVGELEDSDAHK 235 (603)
T ss_pred CCceEEEeccCCCeEEEeeC-CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC-CccEEEEecCCCCcc
Confidence 566777777766555 6665 57888888889999999999999999999999999 8999999 899888874 44
Q ss_pred -CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 245 -QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 245 -~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
+|..++||||++.++|++.| .+++|||+.++++++++......- ..+- .+-|. + ..
T Consensus 236 GsIfalsWsPDs~~~~T~SaD----------kt~KIWdVs~~slv~t~~~~~~v~-----dqqv-----G~lWq--k-d~ 292 (603)
T KOG0318|consen 236 GSIFALSWSPDSTQFLTVSAD----------KTIKIWDVSTNSLVSTWPMGSTVE-----DQQV-----GCLWQ--K-DH 292 (603)
T ss_pred ccEEEEEECCCCceEEEecCC----------ceEEEEEeeccceEEEeecCCchh-----ceEE-----EEEEe--C-Ce
Confidence 49999999999999999999 999999999999999997765411 1112 23453 3 45
Q ss_pred EEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee-eecccc
Q 005315 324 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NLFSVS 401 (702)
Q Consensus 324 la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~ 401 (702)
|++.+ +|.|.+++...+..+.....|..+|+++..+|++++|.+ ++.++ .|..|+..+...-+.. ..+...
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S-----gsyDG--~I~~W~~~~g~~~~~~g~~h~nq 365 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS-----GSYDG--HINSWDSGSGTSDRLAGKGHTNQ 365 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe-----eccCc--eEEEEecCCccccccccccccce
Confidence 55666 999999999999988888899999999999999999998 55554 5666666554322110 111112
Q ss_pred cceeEEccCCCEEEEEEccccccc---ccccccEE---------------------------EEEEecCCcceeEEEecC
Q 005315 402 DCKMYWQSSGDYLAVKVDRYTKTK---KSTYTGFE---------------------------LFRIKERDIPIEVLELDN 451 (702)
Q Consensus 402 ~~~~~~s~~g~~l~~~~~~~~~~~---~~~~~~~~---------------------------l~~l~~~~~~~~~~~l~~ 451 (702)
...+.-+..+.++.++-++..+.. ...++.-. +..++.... ...+.+
T Consensus 366 I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-~~~~~~-- 442 (603)
T KOG0318|consen 366 IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-VSSIPI-- 442 (603)
T ss_pred EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc-ceeecc--
Confidence 222222222333333222211000 00000000 011111000 011112
Q ss_pred CCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEE
Q 005315 452 KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEF 531 (702)
Q Consensus 452 h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i 531 (702)
.....+++.+|+++.+|+++.|+ .|++|.+...... -.....-+..+++.+++||||.||+++.. .+.+.+
T Consensus 443 -~y~~s~vAv~~~~~~vaVGG~Dg---kvhvysl~g~~l~--ee~~~~~h~a~iT~vaySpd~~yla~~Da---~rkvv~ 513 (603)
T KOG0318|consen 443 -GYESSAVAVSPDGSEVAVGGQDG---KVHVYSLSGDELK--EEAKLLEHRAAITDVAYSPDGAYLAAGDA---SRKVVL 513 (603)
T ss_pred -ccccceEEEcCCCCEEEEecccc---eEEEEEecCCccc--ceeeeecccCCceEEEECCCCcEEEEecc---CCcEEE
Confidence 44567899999999999999999 8999999754321 11122223458999999999999999988 999999
Q ss_pred EECCCcceee---ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc----eeeeeccccEeeEEEeeCCCCC
Q 005315 532 YNVDELETMA---TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK----LLYRTLKDHFFQFLWRPRPPSF 604 (702)
Q Consensus 532 ~d~~~~~~~~---~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~----~l~~~~~~~i~~~~w~p~~~~l 604 (702)
||+.+.+... ..|...|.+++|||+...||||+. |..|.||++... .+...|...++.+.|-- ...+
T Consensus 514 yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl-----Dt~Viiysv~kP~~~i~iknAH~~gVn~v~wld-e~tv 587 (603)
T KOG0318|consen 514 YDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL-----DTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLD-ESTV 587 (603)
T ss_pred EEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc-----cceEEEEEccChhhheEeccccccCceeEEEec-CceE
Confidence 9999877633 268899999999999999999999 999999998732 22334777799999975 4678
Q ss_pred CChhhHHHHH
Q 005315 605 LTPEKEEEIA 614 (702)
Q Consensus 605 ~s~~~d~~i~ 614 (702)
++.++|..||
T Consensus 588 vSsG~Da~iK 597 (603)
T KOG0318|consen 588 VSSGQDANIK 597 (603)
T ss_pred EeccCcceeE
Confidence 8888888776
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-33 Score=274.49 Aligned_cols=401 Identities=16% Similarity=0.257 Sum_probs=284.1
Q ss_pred CCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeee--ec--
Q 005315 168 DEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR--YA-- 242 (702)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~--~~-- 242 (702)
||.|. .++...|.. +++-+. ........|+.|...++-..|||.|-|+|+|...| |+|||.. ....+.+ |.
T Consensus 27 dpkgd-~ilY~nGks-v~ir~i-~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt-~~~hiLKnef~v~ 102 (603)
T KOG0318|consen 27 DPKGD-NILYTNGKS-VIIRNI-DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTT-QKEHILKNEFQVL 102 (603)
T ss_pred CCCCC-eEEEeCCCE-EEEEEC-CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEecc-Ccceeeeeeeeec
Confidence 45443 333333333 334455 23444667899999999999999999999999999 9999998 4343333 32
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccc--------------cCC------
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA--------------VGG------ 302 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~--------------~~~------ 302 (702)
...|..|+|++|++.|+..+... ++.+.+.+||. |..+-.+.+|...+. .+.
T Consensus 103 aG~I~Di~Wd~ds~RI~avGEGr------erfg~~F~~DS--G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~f 174 (603)
T KOG0318|consen 103 AGPIKDISWDFDSKRIAAVGEGR------ERFGHVFLWDS--GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAF 174 (603)
T ss_pred ccccccceeCCCCcEEEEEecCc------cceeEEEEecC--CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEE
Confidence 33599999999999988777652 22378888984 333322222221110 000
Q ss_pred -CCCCCCc---------ccceEEEcCCCCcEEEEec-CCeEEEEecCCccccccee---eccCCeeEEEeCCCCCeEEEE
Q 005315 303 -TGGVAGV---------SWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS---LKVENVMDFSWSPTDPIISLF 368 (702)
Q Consensus 303 -~~~~~~~---------~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~sp~~~~la~~ 368 (702)
.+++... --.+++||| ||.+||+.+ ||.|.+||-.++..+.... .|.++|..++|+||+..+++
T Consensus 175 feGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T- 252 (603)
T KOG0318|consen 175 FEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLT- 252 (603)
T ss_pred eeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEE-
Confidence 0000000 011899999 999999999 9999999999998776554 68889999999999999999
Q ss_pred eecCCCCCCCcEEEEEecCCcceeeeeeecc---cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCccee
Q 005315 369 VPELGGGNQPARVSLVQIPSKEELRQKNLFS---VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIE 445 (702)
Q Consensus 369 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 445 (702)
+++|.+++||..... +.++...+.. ...+.+.|. +..|++.+..++ +.++...... .
T Consensus 253 ----~SaDkt~KIWdVs~~--slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~---------in~ln~~d~~---~ 312 (603)
T KOG0318|consen 253 ----VSADKTIKIWDVSTN--SLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGT---------INYLNPSDPS---V 312 (603)
T ss_pred ----ecCCceEEEEEeecc--ceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcE---------EEEecccCCC---h
Confidence 889999888776554 4444333322 122334687 556777666655 6666666544 2
Q ss_pred EEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCc--------Cc------------------------
Q 005315 446 VLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA--------GR------------------------ 493 (702)
Q Consensus 446 ~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~--------~~------------------------ 493 (702)
...+.+|...|+++..+|++++|++++.|| .|.-|+..++... ..
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG---~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~ 389 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDG---HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI 389 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCc---eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence 245679999999999999999999999998 7888887654110 00
Q ss_pred -----------------------------eE---------EEEEcC-------CCceeEEEEccCCCEEEEEeccCCCce
Q 005315 494 -----------------------------VS---------KLTTLK-------GKQANALFWSPSGRFIVLAGLKGFNGQ 528 (702)
Q Consensus 494 -----------------------------~~---------~~~~~~-------~~~v~~~~~spdg~~l~~~~~~~~dg~ 528 (702)
+. .+..+. +-...+++++|++..+++|+. ||.
T Consensus 390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~---Dgk 466 (603)
T KOG0318|consen 390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ---DGK 466 (603)
T ss_pred ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc---cce
Confidence 00 000000 001346889999999999998 999
Q ss_pred EEEEECCCccee----eecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeee----eccccEeeEEEeeC
Q 005315 529 LEFYNVDELETM----ATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR----TLKDHFFQFLWRPR 600 (702)
Q Consensus 529 v~i~d~~~~~~~----~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~----~~~~~i~~~~w~p~ 600 (702)
|++|.+....+. ...|.+.++++++||||.|||++.. .+.+-+|++..+.... .|..+|.+++|+|+
T Consensus 467 vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-----~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~ 541 (603)
T KOG0318|consen 467 VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-----SRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN 541 (603)
T ss_pred EEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-----CCcEEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence 999999865532 3467799999999999999999999 7999999998765542 37789999999999
Q ss_pred CCCCCChhhHHHH
Q 005315 601 PPSFLTPEKEEEI 613 (702)
Q Consensus 601 ~~~l~s~~~d~~i 613 (702)
...++|++-|..|
T Consensus 542 n~~vATGSlDt~V 554 (603)
T KOG0318|consen 542 NKLVATGSLDTNV 554 (603)
T ss_pred ceEEEeccccceE
Confidence 9999999988765
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=278.13 Aligned_cols=394 Identities=14% Similarity=0.239 Sum_probs=298.3
Q ss_pred CCccccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCceEEeecCcCcc-
Q 005315 158 PGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFN- 236 (702)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~- 236 (702)
.+.++......|+|.-. ++....+..++-+.. .......-.-+..|.|++|||||+++|.+..+-+.||..++..+
T Consensus 54 ~~~NI~~ialSp~g~ll-lavdE~g~~~lvs~~--~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~ 130 (893)
T KOG0291|consen 54 TRYNITRIALSPDGTLL-LAVDERGRALLVSLL--SRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKN 130 (893)
T ss_pred cCCceEEEEeCCCceEE-EEEcCCCcEEEEecc--cceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhc
Confidence 34566666677777633 333333444454442 11111111224689999999999999999999999998874333
Q ss_pred ------eeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcE--EeeccCCCcccccCCCCCC
Q 005315 237 ------RLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV--MRDFKGSADEFAVGGTGGV 306 (702)
Q Consensus 237 ------~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~--~~~~~~~~~~~~~~~~~~~ 306 (702)
+..++ +...|.++.||.|.++|++|+.| .+++||.+...+- .+.+.+|.+.+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD----------~s~rl~~v~~~k~~~~~~l~gHkd~Vv------- 193 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRD----------LSARLFGVDGNKNLFTYALNGHKDYVV------- 193 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEecccc----------ceEEEEEeccccccceEeccCCCcceE-------
Confidence 12222 23459999999999999999999 8999999876655 677888888774
Q ss_pred CCcccceEEEcCCCCcEEEEec-CCeEEEEecCC-----------------------ccc-ccc----e-eec-----cC
Q 005315 307 AGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-----------------------FTL-IDK----K-SLK-----VE 351 (702)
Q Consensus 307 ~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~-----------------------~~~-~~~----~-~~~-----~~ 351 (702)
...|.. +..-+.+.+ ||.+.+|.... +.. ..+ + ..+ ..
T Consensus 194 ------acfF~~-~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~ 266 (893)
T KOG0291|consen 194 ------ACFFGA-NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSS 266 (893)
T ss_pred ------EEEecc-CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccccc
Confidence 567888 888888888 99999998661 000 000 0 001 13
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 431 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 431 (702)
.|++.+|++..+.|++ +-..+.+.+|++|....+....+.......+.|+..|.+|++++.. .++
T Consensus 267 kvtaa~fH~~t~~lvv-------gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--------lgQ 331 (893)
T KOG0291|consen 267 KVTAAAFHKGTNLLVV-------GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--------LGQ 331 (893)
T ss_pred ceeeeeccCCceEEEE-------EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--------cce
Confidence 5888999999999988 5555667799999999888888777777788999999999998775 344
Q ss_pred EEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEE
Q 005315 432 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALF 509 (702)
Q Consensus 432 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~ 509 (702)
+.+|..+... -.+..++|...++++++||||+++|+|+.|+ .|++||..++- ++.++..| .++.+.
T Consensus 332 LlVweWqsEs---YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg---KVKvWn~~Sgf------C~vTFteHts~Vt~v~ 399 (893)
T KOG0291|consen 332 LLVWEWQSES---YVLKQQGHSDRITSLAYSPDGQLIATGAEDG---KVKVWNTQSGF------CFVTFTEHTSGVTAVQ 399 (893)
T ss_pred EEEEEeeccc---eeeeccccccceeeEEECCCCcEEEeccCCC---cEEEEeccCce------EEEEeccCCCceEEEE
Confidence 7888877543 2355678999999999999999999999999 99999997654 66666655 689999
Q ss_pred EccCCCEEEEEeccCCCceEEEEECCC--------------------------------------------cceee--ec
Q 005315 510 WSPSGRFIVLAGLKGFNGQLEFYNVDE--------------------------------------------LETMA--TA 543 (702)
Q Consensus 510 ~spdg~~l~~~~~~~~dg~v~i~d~~~--------------------------------------------~~~~~--~~ 543 (702)
|+..|+.+++++. ||+|+.||+.. |+++. ++
T Consensus 400 f~~~g~~llssSL---DGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 400 FTARGNVLLSSSL---DGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred EEecCCEEEEeec---CCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence 9999999999998 99999998862 33332 36
Q ss_pred ccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc--eeeee-ccccEeeEEEeeCCCCCCChhhHHHH
Q 005315 544 EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK--LLYRT-LKDHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 544 ~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~--~l~~~-~~~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
|.++|.+++|+|+|..|+++|. |++|++|++-+. ..... ....+..++|+|+|+.|+.+.-++.|
T Consensus 477 HEgPVs~l~f~~~~~~LaS~SW-----DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLASGSW-----DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred CCCcceeeEEccccCeEEeccc-----cceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceE
Confidence 7799999999999999999999 999999997644 33333 44678999999999999988877655
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.9e-33 Score=253.36 Aligned_cols=280 Identities=19% Similarity=0.276 Sum_probs=238.8
Q ss_pred cccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005315 196 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDA 272 (702)
Q Consensus 196 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~--v~~i~fSpdg~~l~t~s~d~~~~~~~~ 272 (702)
.+++++|...|.++.|++|+++|++++.|| ++|||.- +..+.+.++.+. |..++|||.|+++|.|+-|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~-TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd-------- 118 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSF-TTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD-------- 118 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcc-cccceeEEecCceeEEEEEECCCCCeEEecCcC--------
Confidence 367899999999999999999999999999 8899998 666666666554 9999999999999999999
Q ss_pred CccEEEEEEccCC------cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccce
Q 005315 273 NRVVINIFDVRTG------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK 346 (702)
Q Consensus 273 ~~~~i~vwd~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~ 346 (702)
+...||++.+. ...+.+.+|..-.+ ++.|-+ |+++|...+|.+..+||+++++.+..+
T Consensus 119 --N~Csiy~ls~~d~~g~~~v~r~l~gHtgylS-------------cC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 119 --NKCSIYPLSTRDAEGNVRVSRELAGHTGYLS-------------CCRFLD-DNHILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred --ceeEEEecccccccccceeeeeecCccceeE-------------EEEEcC-CCceEecCCCceEEEEEcccceEEEEe
Confidence 88899999755 45677888887764 789988 887777666999999999999999888
Q ss_pred eeccCCeeEEEeCC-CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccc
Q 005315 347 SLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 425 (702)
Q Consensus 347 ~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 425 (702)
..|.+.|.+++++| +++.+++ |+.|...++|...
T Consensus 183 ~GH~gDV~slsl~p~~~ntFvS-----g~cD~~aklWD~R---------------------------------------- 217 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPSDGNTFVS-----GGCDKSAKLWDVR---------------------------------------- 217 (343)
T ss_pred cCCcccEEEEecCCCCCCeEEe-----cccccceeeeecc----------------------------------------
Confidence 89999999999999 8888888 7777776665432
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC----
Q 005315 426 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---- 501 (702)
Q Consensus 426 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---- 501 (702)
.. .....+++|...|+++.|.|+|.-|++++.|+ +.++||++... .+..+.
T Consensus 218 -------------~~---~c~qtF~ghesDINsv~ffP~G~afatGSDD~---tcRlyDlRaD~------~~a~ys~~~~ 272 (343)
T KOG0286|consen 218 -------------SG---QCVQTFEGHESDINSVRFFPSGDAFATGSDDA---TCRLYDLRADQ------ELAVYSHDSI 272 (343)
T ss_pred -------------Cc---ceeEeecccccccceEEEccCCCeeeecCCCc---eeEEEeecCCc------EEeeeccCcc
Confidence 21 12345779999999999999999999999999 99999998755 333332
Q ss_pred CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee--ecccCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 502 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 502 ~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
..++++++||..|++|+.+.. |.++.+||.-.++.+. .+|...|+++..+|||.-|++++- |..++||.
T Consensus 273 ~~gitSv~FS~SGRlLfagy~---d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW-----Ds~lriW~ 343 (343)
T KOG0286|consen 273 ICGITSVAFSKSGRLLFAGYD---DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW-----DSTLRIWA 343 (343)
T ss_pred cCCceeEEEcccccEEEeeec---CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch-----hHheeecC
Confidence 236899999999999999877 9999999998777665 378899999999999999999999 99999994
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-32 Score=265.18 Aligned_cols=317 Identities=15% Similarity=0.321 Sum_probs=262.3
Q ss_pred cCCCcccceEEECCCCc-EEEEEeCCc-eEEeecCcC------cceeee----------ecCCCeeEEEecCCCCEEEEE
Q 005315 200 KRSYWTESFVQWSPLGT-YLATVHRQG-AAVWGGANT------FNRLMR----------YAHPQVKLIDFSPGEKYLVTY 261 (702)
Q Consensus 200 ~~~~~~v~~v~~Spdg~-~lat~~~~~-i~iw~~~~~------~~~~~~----------~~~~~v~~i~fSpdg~~l~t~ 261 (702)
-+|...|.+++|+|--. .||+++.+. .++|++. . .+..++ +...+|++++|+.+|..||+|
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~-e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLL-ENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeeh-hhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 34999999999999877 888888887 6799876 2 111111 012359999999999999999
Q ss_pred cCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCc
Q 005315 262 SSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF 340 (702)
Q Consensus 262 s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~ 340 (702)
+.+ |.++||+. +|.++.+|..|++++. .++|+. +|.||++++ |+++.+||..++
T Consensus 254 ~~~----------G~~riw~~-~G~l~~tl~~HkgPI~-------------slKWnk-~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 254 SED----------GEARIWNK-DGNLISTLGQHKGPIF-------------SLKWNK-KGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred ecC----------cEEEEEec-CchhhhhhhccCCceE-------------EEEEcC-CCCEEEeccCCccEEEEeccCc
Confidence 999 99999995 8999999999999874 799999 999999999 999999999999
Q ss_pred ccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcc
Q 005315 341 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 341 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 420 (702)
.......+|..+..++.|-.+..+. + ++.++ .|.++.+....++.....+......+.|+|.|..|+++++|
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~~~F~-t-----s~td~--~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD 380 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSNDEFA-T-----SSTDG--CIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDD 380 (524)
T ss_pred eEEEeeeeccCCccceEEecCceEe-e-----cCCCc--eEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCC
Confidence 8887777887776788997665544 4 33444 45566666666666666677788889999999999999999
Q ss_pred cccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCc---------EEEEEEcCCCCCeEEEEEeecccCc
Q 005315 421 YTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH---------RFAVIHGDSPRPDISFYSMRTAQHA 491 (702)
Q Consensus 421 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~---------~l~~~~~d~~~~~v~i~d~~~~~~~ 491 (702)
.+ ++||.+..... .-.+.+|...|..+.|+|.|. .+++++.|+ +|++||+..+.
T Consensus 381 ~T---------lkiWs~~~~~~---~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds---tV~lwdv~~gv-- 443 (524)
T KOG0273|consen 381 GT---------LKIWSMGQSNS---VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS---TVKLWDVESGV-- 443 (524)
T ss_pred Ce---------eEeeecCCCcc---hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC---eEEEEEccCCc--
Confidence 98 89999765432 245778999999999999753 788888888 99999998765
Q ss_pred CceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc-cCceeeeEECCCCCEEEEEEeecc
Q 005315 492 GRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVH 568 (702)
Q Consensus 492 ~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~-~~~i~~~~~spdg~~l~t~s~~~~ 568 (702)
++.++..| +|++++|||+|+|+++|+. ||.|.+|++.+++++.... ...|..++|+.+|.+|..+..
T Consensus 444 ----~i~~f~kH~~pVysvafS~~g~ylAsGs~---dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s--- 513 (524)
T KOG0273|consen 444 ----PIHTLMKHQEPVYSVAFSPNGRYLASGSL---DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS--- 513 (524)
T ss_pred ----eeEeeccCCCceEEEEecCCCcEEEecCC---CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec---
Confidence 77777554 7999999999999999998 9999999999999998744 477899999999999999888
Q ss_pred cccccEEEEEe
Q 005315 569 EMENGFNIWSF 579 (702)
Q Consensus 569 ~~d~~v~iw~~ 579 (702)
|+.+++-|+
T Consensus 514 --d~~vcvldl 522 (524)
T KOG0273|consen 514 --DGSVCVLDL 522 (524)
T ss_pred --CCCceEEEe
Confidence 899998876
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=269.21 Aligned_cols=269 Identities=16% Similarity=0.257 Sum_probs=232.7
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC--C
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--D 321 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d--g 321 (702)
..|..+.||+|++.||||+.. |.++||+..++..+.+|.+|...+. ++.|+| . +
T Consensus 176 rPis~~~fS~ds~~laT~sws----------G~~kvW~~~~~~~~~~l~gH~~~v~-------------~~~fhP-~~~~ 231 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWS----------GLVKVWSVPQCNLLQTLRGHTSRVG-------------AAVFHP-VDSD 231 (459)
T ss_pred CcceeeEeecCCCeEEEeecC----------CceeEeecCCcceeEEEecccccee-------------eEEEcc-CCCc
Confidence 358999999999999999999 9999999999999999999998874 789999 5 6
Q ss_pred cEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc
Q 005315 322 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 400 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 400 (702)
..+|+++ ||++++|++.+-..+.....|...|..++|+|+|++|++ ++-|.+.++|....
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~T-----asfD~tWRlWD~~t-------------- 292 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGT-----ASFDSTWRLWDLET-------------- 292 (459)
T ss_pred cceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeee-----cccccchhhccccc--------------
Confidence 6899999 999999999988888888888889999999999999998 77777777654432
Q ss_pred ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeE
Q 005315 401 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 480 (702)
Q Consensus 401 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 480 (702)
+. +.+...+|...|.+++|+|||..+++++.|. .-
T Consensus 293 ---------------------------------------k~---ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~---~~ 327 (459)
T KOG0272|consen 293 ---------------------------------------KS---ELLLQEGHSKGVFSIAFQPDGSLAATGGLDS---LG 327 (459)
T ss_pred ---------------------------------------ch---hhHhhcccccccceeEecCCCceeeccCccc---hh
Confidence 10 1122448999999999999999999999998 78
Q ss_pred EEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECC-
Q 005315 481 SFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP- 555 (702)
Q Consensus 481 ~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~sp- 555 (702)
+|||++++. .+..+.+| +|.+++|||+|..|++++. |++++|||++....+.+ .|..-|+.+.|+|
T Consensus 328 RvWDlRtgr------~im~L~gH~k~I~~V~fsPNGy~lATgs~---Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 328 RVWDLRTGR------CIMFLAGHIKEILSVAFSPNGYHLATGSS---DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred heeecccCc------EEEEecccccceeeEeECCCceEEeecCC---CCcEEEeeecccccceecccccchhhheEeccc
Confidence 999999876 66666666 7999999999999999998 99999999997776665 6678899999999
Q ss_pred CCCEEEEEEeecccccccEEEEEecc-ceeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 556 TGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 556 dg~~l~t~s~~~~~~d~~v~iw~~~g-~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.|.+|+|++. |++++||.-.+ .++... |.+.|.++..+|++.+++|++-|.++|
T Consensus 399 ~g~fL~Tasy-----D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 399 EGYFLVTASY-----DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred CCeEEEEccc-----CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceee
Confidence 7889999999 99999999764 444443 778999999999999999999998887
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.6e-32 Score=274.71 Aligned_cols=437 Identities=13% Similarity=0.150 Sum_probs=325.2
Q ss_pred ccccccCCCCC-ceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceee
Q 005315 162 LQKWLTDEKAR-DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 239 (702)
Q Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 239 (702)
+.+.+++|.-. ..++.++.|++.+.||......+......|...|++++|++|+.-++++++|. +.|||.. ..+...
T Consensus 150 Vssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~-~~~~l~ 228 (775)
T KOG0319|consen 150 VSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV-QYKKLK 228 (775)
T ss_pred EEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh-hhhhhh
Confidence 33444444322 33455666888889999434445778899999999999999999999999999 5699998 777777
Q ss_pred eecCC-CeeEEEecCC-----CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcc-cc-------------
Q 005315 240 RYAHP-QVKLIDFSPG-----EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE-FA------------- 299 (702)
Q Consensus 240 ~~~~~-~v~~i~fSpd-----g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~-~~------------- 299 (702)
..+.. .+-++.+-++ |.|+.|++.. |.+++||..+++++.....+... ..
T Consensus 229 ~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~----------g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 229 TLPLYESLESVVRLREELGGKGEYIITAGGS----------GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred eechhhheeeEEEechhcCCcceEEEEecCC----------ceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 77644 4777777777 6799999999 99999998877655433322100 00
Q ss_pred ---------cCC--------CCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCC
Q 005315 300 ---------VGG--------TGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPT 361 (702)
Q Consensus 300 ---------~~~--------~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~ 361 (702)
+.. -.|-++.-..+..|.| ..+++|.++ .+.+++|+.++..+. -...|.+.|.++....+
T Consensus 299 vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~-e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~ 376 (775)
T KOG0319|consen 299 VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGP-EESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSS 376 (775)
T ss_pred EEccceEEEEEccccEEehhhcCCchhheeeeecCC-ccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeeccc
Confidence 000 0000111111345677 888999998 899999999877654 44568888999986667
Q ss_pred CCeEEEEeecCCCCCCCcEEEEEecCCcc--eeeeeeecccccceeEEccCC-CEEEEEEcccccccccccccEEEEEEe
Q 005315 362 DPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSG-DYLAVKVDRYTKTKKSTYTGFELFRIK 438 (702)
Q Consensus 362 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g-~~l~~~~~~~~~~~~~~~~~~~l~~l~ 438 (702)
|-+|++ ++.|.++++|.++....+ .+...+.+......++.+..| .+|++++.|.+ +++|.+.
T Consensus 377 g~llat-----~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t---------lK~W~l~ 442 (775)
T KOG0319|consen 377 GDLLAT-----GSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT---------LKLWDLP 442 (775)
T ss_pred CcEEEE-----ecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce---------EEEecCC
Confidence 789999 999999999999443332 344445455555555666555 47777888877 8899887
Q ss_pred cC--CcceeEE----EecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEE
Q 005315 439 ER--DIPIEVL----ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFW 510 (702)
Q Consensus 439 ~~--~~~~~~~----~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~ 510 (702)
.. ..+...+ ....|...|++++++|+.+.||+++.|. +.+||++... ..+.++.+| .+.++.|
T Consensus 443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk---taKiW~le~~------~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 443 KSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK---TAKIWDLEQL------RLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred CcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc---ceeeecccCc------eEEEEeeCCccceEEEEe
Confidence 62 1111111 2247999999999999999999999999 9999999732 377888877 6899999
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc-eeee-
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLYR- 586 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~l~~- 586 (702)
+|..+.+++++. |++|+||.++++.++.+ +|...|..+.|-.+|+.|++++. ||-++||++... .+..
T Consensus 514 s~~dq~laT~Sg---D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a-----dGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 514 SKNDQLLATCSG---DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA-----DGLIKLWNIKTNECEMTL 585 (775)
T ss_pred ccccceeEeccC---CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC-----CCcEEEEeccchhhhhhh
Confidence 999999999998 99999999999999987 56788999999999999999999 999999999854 3333
Q ss_pred -eccccEeeEEEeeCCCCCCChhhHHHHHHHHHHHhHhhhhhhHHHHhhhhHHHHHHHHHHH
Q 005315 587 -TLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLK 647 (702)
Q Consensus 587 -~~~~~i~~~~w~p~~~~l~s~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (702)
.|.+++|.++-+|....++|++.|+.|. +++...++++.+..+++++..++.+++.
T Consensus 586 D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~-----~wkD~Te~~~~ee~~K~~eaieq~QeL~ 642 (775)
T KOG0319|consen 586 DAHNDRVWALSVSPLLDMFVTGGGDGRII-----FWKDVTEEEQNEEQEKREEAIEQEQELE 642 (775)
T ss_pred hhccceeEEEeecCccceeEecCCCeEEE-----EeecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999886 5555556555555555555555554443
No 14
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-30 Score=263.83 Aligned_cols=396 Identities=15% Similarity=0.218 Sum_probs=271.5
Q ss_pred CCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cCC-Ce
Q 005315 170 KARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QV 246 (702)
Q Consensus 170 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v 246 (702)
+.-..++++|.|+.+.+|+. ....+...+.+|...|+++.|+..|..||+|+.|+ |+|||+- ...-+.++ +|. .|
T Consensus 75 ~d~l~lAVGYaDGsVqif~~-~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV-~E~Gl~rL~GHkd~i 152 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSL-ESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLV-GEEGLFRLRGHKDSI 152 (888)
T ss_pred CCcceEEEEecCceEEeecc-CCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEec-cceeeEEeecchHHH
Confidence 34456799999999999998 44577788999999999999999999999999999 8899998 55555665 344 48
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccc----------cCCCCC-----------
Q 005315 247 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA----------VGGTGG----------- 305 (702)
Q Consensus 247 ~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~----------~~~~~~----------- 305 (702)
+..-|..+.++|++.+.| +.|++||+.+..+..+...|...+- .+++.+
T Consensus 153 T~~~F~~~~~~lvS~sKD----------s~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 153 TQALFLNGDSFLVSVSKD----------SMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred hHHhccCCCeEEEEeccC----------ceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccc
Confidence 889999889999999999 8899999876555444333322210 000000
Q ss_pred --------------------------------------------------------------------------------
Q 005315 306 -------------------------------------------------------------------------------- 305 (702)
Q Consensus 306 -------------------------------------------------------------------------------- 305 (702)
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence
Q ss_pred ----------------------------------------CCCcccc----------------------------eEEEc
Q 005315 306 ----------------------------------------VAGVSWP----------------------------VFRWG 317 (702)
Q Consensus 306 ----------------------------------------~~~~~w~----------------------------~~~~s 317 (702)
-+.++|. .+++|
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee
Confidence 0000000 12222
Q ss_pred CCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee
Q 005315 318 GGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 397 (702)
Q Consensus 318 ~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 397 (702)
. +...+++++.+.+.||+..+++++.+. ....+.+..|.|.++++++ +...+.+-+|++.+...+-....
T Consensus 383 ~-d~~~~~Sga~~SikiWn~~t~kciRTi--~~~y~l~~~Fvpgd~~Iv~-------G~k~Gel~vfdlaS~~l~Eti~A 452 (888)
T KOG0306|consen 383 S-DSILLASGAGESIKIWNRDTLKCIRTI--TCGYILASKFVPGDRYIVL-------GTKNGELQVFDLASASLVETIRA 452 (888)
T ss_pred c-CceeeeecCCCcEEEEEccCcceeEEe--ccccEEEEEecCCCceEEE-------eccCCceEEEEeehhhhhhhhhc
Confidence 2 222233333333333333333332211 1112333333333333333 12222233333333222222223
Q ss_pred cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEec----CCcc--------eeEEEecCCCCceeEEEEeeCC
Q 005315 398 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE----RDIP--------IEVLELDNKNDKIIAFAWEPKG 465 (702)
Q Consensus 398 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~--------~~~~~l~~h~~~v~~~~~sp~g 465 (702)
+......+..+||+..+++++.|.+ +.+|+... ++.. ..++++ ...|.++++||||
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDkt---------VkfWdf~l~~~~~gt~~k~lsl~~~rtLel---~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKT---------VKFWDFKLVVSVPGTQKKVLSLKHTRTLEL---EDDVLCVSVSPDG 520 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcE---------EEEEeEEEEeccCcccceeeeeccceEEec---cccEEEEEEcCCC
Confidence 4445556677899999999999988 66666542 1111 123445 7889999999999
Q ss_pred cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-
Q 005315 466 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT- 542 (702)
Q Consensus 466 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~- 542 (702)
+++|++--|. +|++|-+++-+ ..-++-+| ||.++..|||++.+++++. |.+|++|-++-|.+-.+
T Consensus 521 k~LaVsLLdn---TVkVyflDtlK------FflsLYGHkLPV~smDIS~DSklivTgSA---DKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 521 KLLAVSLLDN---TVKVYFLDTLK------FFLSLYGHKLPVLSMDISPDSKLIVTGSA---DKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred cEEEEEeccC---eEEEEEeccee------eeeeecccccceeEEeccCCcCeEEeccC---CCceEEeccccchhhhhh
Confidence 9999999998 99999997654 45556666 8999999999999999999 99999999998887765
Q ss_pred -cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc-ceee--eeccccEeeEEEeeCCCCCCChhhHHHHHHH
Q 005315 543 -AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLY--RTLKDHFFQFLWRPRPPSFLTPEKEEEIAKN 616 (702)
Q Consensus 543 -~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~l~--~~~~~~i~~~~w~p~~~~l~s~~~d~~i~~~ 616 (702)
+|...|.++.|-|....+.+++. |+.++-||-.. ..+. ..|...+++++-+|+|.+++|++.|..||-+
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gK-----D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGK-----DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred hcccCceeEEEEcccceeEEEecC-----cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence 66789999999999999999999 99999998553 2333 3377899999999999999999999999843
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.4e-30 Score=260.39 Aligned_cols=358 Identities=16% Similarity=0.293 Sum_probs=284.1
Q ss_pred CCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCC--ceEEeecCcCcceeeee--cCCCe
Q 005315 171 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ--GAAVWGGANTFNRLMRY--AHPQV 246 (702)
Q Consensus 171 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~--~i~iw~~~~~~~~~~~~--~~~~v 246 (702)
+-..+++....+...++.. +....++.+.-....|..++|+..|.+||.|+.. .+.||++. +..-+.+. |...+
T Consensus 276 ~t~~lvvgFssG~f~Lyel-P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq-sEsYVlKQQgH~~~i 353 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYEL-PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ-SESYVLKQQGHSDRI 353 (893)
T ss_pred CceEEEEEecCCeeEEEec-CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee-ccceeeeccccccce
Confidence 3445666667777768887 4666677776666789999999999999999987 38899998 54433333 34569
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEE
Q 005315 247 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 326 (702)
Q Consensus 247 ~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~ 326 (702)
.+++.||||++||||+.| +.|+|||..+|-|+.+|..|...++ .++|+. +|+.+.+
T Consensus 354 ~~l~YSpDgq~iaTG~eD----------gKVKvWn~~SgfC~vTFteHts~Vt-------------~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAED----------GKVKVWNTQSGFCFVTFTEHTSGVT-------------AVQFTA-RGNVLLS 409 (893)
T ss_pred eeEEECCCCcEEEeccCC----------CcEEEEeccCceEEEEeccCCCceE-------------EEEEEe-cCCEEEE
Confidence 999999999999999999 9999999999999999999988775 789999 9999999
Q ss_pred ec-CCeEEEEecCCcccccceeeccC-CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccce
Q 005315 327 LG-KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 404 (702)
Q Consensus 327 ~~-d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 404 (702)
.+ ||+|+.||+...+..+.+....+ ...+++..|.|..++. +.-....|++|+..+++.+.....+......
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A------G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~ 483 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA------GAQDSFEIFVWSVQTGQLLDILSGHEGPVSG 483 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe------eccceEEEEEEEeecCeeeehhcCCCCccee
Confidence 99 99999999987766555433322 3678888899988875 3455678999999999998888888888888
Q ss_pred eEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEE
Q 005315 405 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 484 (702)
Q Consensus 405 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 484 (702)
+.++|.|..|++++-|.+ +++|++-.....++.+.+ ...+.+++|+|+|+.+|+++-|| .|.|||
T Consensus 484 l~f~~~~~~LaS~SWDkT---------VRiW~if~s~~~vEtl~i---~sdvl~vsfrPdG~elaVaTldg---qItf~d 548 (893)
T KOG0291|consen 484 LSFSPDGSLLASGSWDKT---------VRIWDIFSSSGTVETLEI---RSDVLAVSFRPDGKELAVATLDG---QITFFD 548 (893)
T ss_pred eEEccccCeEEeccccce---------EEEEEeeccCceeeeEee---ccceeEEEEcCCCCeEEEEEecc---eEEEEE
Confidence 899999999999999988 899999887777777777 88999999999999999999999 999999
Q ss_pred eecccCcCceE-------------EEE---EcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee-------
Q 005315 485 MRTAQHAGRVS-------------KLT---TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA------- 541 (702)
Q Consensus 485 ~~~~~~~~~~~-------------~~~---~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~------- 541 (702)
.+.+.....+. .+. .-.++..+.+++|+||.+|++|+. ...|++|++.++-++.
T Consensus 549 ~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~---sn~iCiY~v~~~vllkkfqiS~N 625 (893)
T KOG0291|consen 549 IKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE---SNSICIYDVPEGVLLKKFQISDN 625 (893)
T ss_pred hhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC---cccEEEEECchhheeeeEEeccc
Confidence 87543211110 011 112346789999999999999998 8899999987421111
Q ss_pred -------------------------e--------------------------cccCceeeeEECCCCCEEEEEEeecccc
Q 005315 542 -------------------------T--------------------------AEHFMATDVEWDPTGRYVATAVTSVHEM 570 (702)
Q Consensus 542 -------------------------~--------------------------~~~~~i~~~~~spdg~~l~t~s~~~~~~ 570 (702)
+ ...-.++++.|||.|+-+|.++.
T Consensus 626 ~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatT----- 700 (893)
T KOG0291|consen 626 RSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATT----- 700 (893)
T ss_pred cchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecc-----
Confidence 0 00113678999999999999988
Q ss_pred cccEEEEEecccee
Q 005315 571 ENGFNIWSFNGKLL 584 (702)
Q Consensus 571 d~~v~iw~~~g~~l 584 (702)
-++.||.++...+
T Consensus 701 -EGl~IYsld~~~~ 713 (893)
T KOG0291|consen 701 -EGLLIYSLDTTIL 713 (893)
T ss_pred -cceEEEecCCceE
Confidence 5788888765433
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.98 E-value=4.4e-30 Score=232.82 Aligned_cols=281 Identities=15% Similarity=0.231 Sum_probs=224.5
Q ss_pred ccccCCCcccceEEECCCC-cEEEEEeCCc-eEEeecCc----Ccceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCC
Q 005315 197 PVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGAN----TFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSN 268 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~----~~~~~~~~-~~~~-v~~i~fSpdg~~l~t~s~d~~~~ 268 (702)
..+.+|+.-|+.++..+.+ ..|++++.|. +.+|++.. .+..+.++ +|.. |..+..|+||+|.++++.|
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD---- 84 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD---- 84 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc----
Confidence 4578999999999999874 5777888888 77998752 23345555 3444 9999999999999999999
Q ss_pred CcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccccee
Q 005315 269 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 347 (702)
Q Consensus 269 ~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~ 347 (702)
+++++||+.+|+..+.|.+|...+. +++||+ |.+.|++++ |++|.+|++-.........
T Consensus 85 ------~~lrlWDl~~g~~t~~f~GH~~dVl-------------sva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~ 144 (315)
T KOG0279|consen 85 ------GTLRLWDLATGESTRRFVGHTKDVL-------------SVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHE 144 (315)
T ss_pred ------ceEEEEEecCCcEEEEEEecCCceE-------------EEEecC-CCceeecCCCcceeeeeeecccEEEEEec
Confidence 9999999999999999999998875 899999 999999999 9999999987554332221
Q ss_pred ec-cCCeeEEEeCCC--CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccc
Q 005315 348 LK-VENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT 424 (702)
Q Consensus 348 ~~-~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~ 424 (702)
.. .+-|.++.|+|+ ..+|+. ++.|+.+++|..+.-
T Consensus 145 ~~~~~WVscvrfsP~~~~p~Ivs-----~s~DktvKvWnl~~~------------------------------------- 182 (315)
T KOG0279|consen 145 DSHREWVSCVRFSPNESNPIIVS-----ASWDKTVKVWNLRNC------------------------------------- 182 (315)
T ss_pred CCCcCcEEEEEEcCCCCCcEEEE-----ccCCceEEEEccCCc-------------------------------------
Confidence 11 344999999998 677777 778888776643210
Q ss_pred cccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC-
Q 005315 425 KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK- 503 (702)
Q Consensus 425 ~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~- 503 (702)
.. ...+.+|.+.++.+++||||...++++.|+ .+.+||++.++ .+.++...
T Consensus 183 ----------------~l---~~~~~gh~~~v~t~~vSpDGslcasGgkdg---~~~LwdL~~~k------~lysl~a~~ 234 (315)
T KOG0279|consen 183 ----------------QL---RTTFIGHSGYVNTVTVSPDGSLCASGGKDG---EAMLWDLNEGK------NLYSLEAFD 234 (315)
T ss_pred ----------------ch---hhccccccccEEEEEECCCCCEEecCCCCc---eEEEEEccCCc------eeEeccCCC
Confidence 00 012448899999999999999999999999 99999998765 57777644
Q ss_pred ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee------c-----ccCceeeeEECCCCCEEEEEEeecccccc
Q 005315 504 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT------A-----EHFMATDVEWDPTGRYVATAVTSVHEMEN 572 (702)
Q Consensus 504 ~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~------~-----~~~~i~~~~~spdg~~l~t~s~~~~~~d~ 572 (702)
.|++++|+|+--.|+.+. +..|+|||+.+..++.. . ....+.+++||+||+.|+.+-. |+
T Consensus 235 ~v~sl~fspnrywL~~at----~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t-----d~ 305 (315)
T KOG0279|consen 235 IVNSLCFSPNRYWLCAAT----ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT-----DN 305 (315)
T ss_pred eEeeEEecCCceeEeecc----CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec-----CC
Confidence 789999999987777776 56799999998766543 1 1345678999999999999999 99
Q ss_pred cEEEEEec
Q 005315 573 GFNIWSFN 580 (702)
Q Consensus 573 ~v~iw~~~ 580 (702)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999864
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=1e-29 Score=226.50 Aligned_cols=272 Identities=14% Similarity=0.290 Sum_probs=224.0
Q ss_pred cEEEEEeCCc-eEEeecCcCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--EEee
Q 005315 216 TYLATVHRQG-AAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRD 290 (702)
Q Consensus 216 ~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~--v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~--~~~~ 290 (702)
-+||+++.|. |++|... ++.+..++.|+. |+.+.+.|++++||+++.. .|++||+.+++ ++.+
T Consensus 11 viLvsA~YDhTIRfWqa~-tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-----------hvRlyD~~S~np~Pv~t 78 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL-TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-----------HVRLYDLNSNNPNPVAT 78 (311)
T ss_pred eEEEeccCcceeeeeehh-cCeEEEEEecCccceeeEEEcCCcchhhhccCC-----------eeEEEEccCCCCCceeE
Confidence 4899999998 8899999 999999998885 9999999999999999876 79999998886 5899
Q ss_pred ccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEe
Q 005315 291 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFV 369 (702)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 369 (702)
|.+|...++ .+.|.. +|+++++++ ||+++|||+......+.+ .+..+|+++..+|+-..|++
T Consensus 79 ~e~h~kNVt-------------aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis-- 141 (311)
T KOG0315|consen 79 FEGHTKNVT-------------AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELIS-- 141 (311)
T ss_pred EeccCCceE-------------EEEEee-cCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEe--
Confidence 999977764 789999 999999999 999999999985554444 34477999999999888887
Q ss_pred ecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005315 370 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 449 (702)
Q Consensus 370 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 449 (702)
+++.+.|++|++....... ..+
T Consensus 142 -----~dqsg~irvWDl~~~~c~~-----------------------------------------------------~li 163 (311)
T KOG0315|consen 142 -----GDQSGNIRVWDLGENSCTH-----------------------------------------------------ELI 163 (311)
T ss_pred -----ecCCCcEEEEEccCCcccc-----------------------------------------------------ccC
Confidence 7777788877764321100 001
Q ss_pred cCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCc
Q 005315 450 DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNG 527 (702)
Q Consensus 450 ~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg 527 (702)
+.-...|.+++..|+|.+++.+...| +.++|++-.......+.++..+..| .+..+.+|||+++|++++. |.
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG---~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss---dk 237 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKG---NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS---DK 237 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCc---cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC---Cc
Confidence 12245788899999999999998888 9999999776655666777777655 5788999999999999998 99
Q ss_pred eEEEEECCCc---ceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceee
Q 005315 528 QLEFYNVDEL---ETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLY 585 (702)
Q Consensus 528 ~v~i~d~~~~---~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~ 585 (702)
+++||+.++. ++..+.|...+.+++||.||+||+|++. |+..++|++. |+.+.
T Consensus 238 tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass-----d~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 238 TVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS-----DHTARLWDLSAGKEVR 294 (311)
T ss_pred eEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC-----CCceeecccccCceee
Confidence 9999999976 2333467789999999999999999999 9999999987 45443
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=258.51 Aligned_cols=392 Identities=13% Similarity=0.154 Sum_probs=289.7
Q ss_pred cccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcE--EEEEeCCc-eEEeecCcCcceeeee
Q 005315 165 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTY--LATVHRQG-AAVWGGANTFNRLMRY 241 (702)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~--lat~~~~~-i~iw~~~~~~~~~~~~ 241 (702)
..++|.+ ..++..+-++.+.+|+. ..+.....|.+|.+.|+++.|.|+-.+ |++|..|+ +++||+.....++...
T Consensus 111 ma~~~~g-~LlAtggaD~~v~VWdi-~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~ 188 (775)
T KOG0319|consen 111 MAFDPTG-TLLATGGADGRVKVWDI-KNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM 188 (775)
T ss_pred EEEcCCC-ceEEeccccceEEEEEe-eCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH
Confidence 4456666 56666666888899999 677888999999999999999998765 88888888 8899998333323333
Q ss_pred --cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCC
Q 005315 242 --AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 319 (702)
Q Consensus 242 --~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~ 319 (702)
|...|++++|++|+.-+++++.| ..+.|||+.+-+.+++++....-- .+.+-+
T Consensus 189 ~~H~S~vtsL~~~~d~~~~ls~~RD----------kvi~vwd~~~~~~l~~lp~ye~~E--------------~vv~l~- 243 (775)
T KOG0319|consen 189 ILHKSAVTSLAFSEDSLELLSVGRD----------KVIIVWDLVQYKKLKTLPLYESLE--------------SVVRLR- 243 (775)
T ss_pred HhhhhheeeeeeccCCceEEEeccC----------cEEEEeehhhhhhhheechhhhee--------------eEEEec-
Confidence 45569999999999999999999 899999998877777766543322 334444
Q ss_pred C-----CcEEEEec-CCeEEEEecCCcccccceeec-cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCccee
Q 005315 320 K-----DKYFAKLG-KNMISVYETESFTLIDKKSLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 392 (702)
Q Consensus 320 d-----g~~la~~~-d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (702)
+ +.|+.+.+ +|.+++|+..+++++.+.... .+.+..+...+..+.++..+ .++ .+.+|+..+.+..
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vt-----aeQ--nl~l~d~~~l~i~ 316 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVT-----AEQ--NLFLYDEDELTIV 316 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEE-----ccc--eEEEEEccccEEe
Confidence 4 55888888 999999999998877655433 33355555544444444422 444 4566677777666
Q ss_pred eeeeeccccccee-EEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEE
Q 005315 393 RQKNLFSVSDCKM-YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 471 (702)
Q Consensus 393 ~~~~~~~~~~~~~-~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~ 471 (702)
+..-.++.....| .|.|..++|+++++... +++|.+...... -+.+|...|.++....+|.+|+++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~---------lr~y~~~~~~c~----ii~GH~e~vlSL~~~~~g~llat~ 383 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPE---------LRLYTLPTSYCQ----IIPGHTEAVLSLDVWSSGDLLATG 383 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCc---------eEEEecCCCceE----EEeCchhheeeeeecccCcEEEEe
Confidence 6655555555555 57899999999988765 777766544332 456788888887754566777777
Q ss_pred EcCCCCCeEEEEEeecccCc-------------------------------Cce---------------EEE------EE
Q 005315 472 HGDSPRPDISFYSMRTAQHA-------------------------------GRV---------------SKL------TT 499 (702)
Q Consensus 472 ~~d~~~~~v~i~d~~~~~~~-------------------------------~~~---------------~~~------~~ 499 (702)
+.|. ++++|.++.+... ..+ ..+ ..
T Consensus 384 sKD~---svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 384 SKDK---SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred cCCc---eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 7777 7777766322000 000 000 01
Q ss_pred cCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEE
Q 005315 500 LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIW 577 (702)
Q Consensus 500 ~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw 577 (702)
.+.+.||+++.+|+.+.+++++. |.+.+||+++.+.++.+ +|...+.++.|+|..+.+||+|. |.+|+||
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~Sq---DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg-----D~TvKIW 532 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQ---DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG-----DKTVKIW 532 (775)
T ss_pred hhcccccceEecCCCceEEeccc---ccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccC-----CceEEEE
Confidence 12346899999999999999998 99999999998877664 78899999999999999999999 9999999
Q ss_pred Eecc-ceeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 578 SFNG-KLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 578 ~~~g-~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.++. ..+.+. |...|..+.|-.+++.|+|++.++.||
T Consensus 533 ~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 533 SISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred EeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEE
Confidence 9984 455544 667899999999999999999999775
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-29 Score=229.09 Aligned_cols=272 Identities=17% Similarity=0.241 Sum_probs=209.7
Q ss_pred CCCCceEEEEeCCceEEEecCC----CCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-c
Q 005315 169 EKARDQFVIRSGTDTEVLWNDA----RHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-A 242 (702)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~w~~~----~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~ 242 (702)
+.+++.++-..-+.+.+.|... +.+.+...|+||...|+.+..|+||++.++++.|+ +++||+. +++...+| .
T Consensus 25 ~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~-~g~~t~~f~G 103 (315)
T KOG0279|consen 25 IKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA-TGESTRRFVG 103 (315)
T ss_pred cCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEec-CCcEEEEEEe
Confidence 4456666666778888899864 34566788999999999999999999999999999 7899999 76777777 3
Q ss_pred CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCC--CcccccCCCCCCCCcccceEEEcCC
Q 005315 243 HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGG 319 (702)
Q Consensus 243 ~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~w~~~~~s~~ 319 (702)
|. .|.+++||||.+.|++|+.| .+|++|++. |.+..+.... ..-++ |++|+|
T Consensus 104 H~~dVlsva~s~dn~qivSGSrD----------kTiklwnt~-g~ck~t~~~~~~~~WVs-------------cvrfsP- 158 (315)
T KOG0279|consen 104 HTKDVLSVAFSTDNRQIVSGSRD----------KTIKLWNTL-GVCKYTIHEDSHREWVS-------------CVRFSP- 158 (315)
T ss_pred cCCceEEEEecCCCceeecCCCc----------ceeeeeeec-ccEEEEEecCCCcCcEE-------------EEEEcC-
Confidence 44 69999999999999999999 999999974 5555555444 33332 899999
Q ss_pred C--CcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeee
Q 005315 320 K--DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 396 (702)
Q Consensus 320 d--g~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 396 (702)
+ .-+|++++ |++|++||+.+.++...+..|...++.+++||||.++++ |+.++.+. +|++...+.
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas-----Ggkdg~~~--LwdL~~~k~----- 226 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS-----GGKDGEAM--LWDLNEGKN----- 226 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec-----CCCCceEE--EEEccCCce-----
Confidence 7 67899999 999999999999998888889999999999999999998 65555544 444322221
Q ss_pred ecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC
Q 005315 397 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 476 (702)
Q Consensus 397 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 476 (702)
+| .+ .|...|.+++|+|+--.|+.+.+.
T Consensus 227 -------------------------------------ly------------sl-~a~~~v~sl~fspnrywL~~at~~-- 254 (315)
T KOG0279|consen 227 -------------------------------------LY------------SL-EAFDIVNSLCFSPNRYWLCAATAT-- 254 (315)
T ss_pred -------------------------------------eE------------ec-cCCCeEeeEEecCCceeEeeccCC--
Confidence 11 12 458899999999998888777664
Q ss_pred CCeEEEEEeecccCcCceEE--EEE-cC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 477 RPDISFYSMRTAQHAGRVSK--LTT-LK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 477 ~~~v~i~d~~~~~~~~~~~~--~~~-~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
.|+|||+.++......++ +.. .. ...+.+++||+||..|+.+-. |+.|++|.+.
T Consensus 255 --sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t---d~~irv~qv~ 313 (315)
T KOG0279|consen 255 --SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT---DNVIRVWQVA 313 (315)
T ss_pred --ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec---CCcEEEEEee
Confidence 599999987642211111 111 11 113578999999999999987 9999999864
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=229.96 Aligned_cols=276 Identities=14% Similarity=0.207 Sum_probs=225.5
Q ss_pred eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEE
Q 005315 237 RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 316 (702)
Q Consensus 237 ~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 316 (702)
++.+-|...|.++.|++|.++|++++.| |.+.|||..|......++.+..-+. .++|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqD----------GklIvWDs~TtnK~haipl~s~WVM-------------tCA~ 105 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQD----------GKLIVWDSFTTNKVHAIPLPSSWVM-------------TCAY 105 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccC----------CeEEEEEcccccceeEEecCceeEE-------------EEEE
Confidence 4455556679999999999999999999 9999999999998888887766553 6799
Q ss_pred cCCCCcEEEEec-CCeEEEEecCCc--c----cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 317 GGGKDKYFAKLG-KNMISVYETESF--T----LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 317 s~~dg~~la~~~-d~~i~v~d~~~~--~----~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
+| .|+++|+++ |+...||++.+. . +......|..-+.+..|-+|++ |++ +++|.+..+|.+ ++.
T Consensus 106 sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-ilT-----~SGD~TCalWDi--e~g 176 (343)
T KOG0286|consen 106 SP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-ILT-----GSGDMTCALWDI--ETG 176 (343)
T ss_pred CC-CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc-eEe-----cCCCceEEEEEc--ccc
Confidence 99 999999999 999999998854 1 2223345667788888888555 444 667776555433 221
Q ss_pred ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEE
Q 005315 390 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRF 468 (702)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l 468 (702)
+ ....+.+|.+.|.+++++| +++.|
T Consensus 177 ~------------------------------------------------------~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 177 Q------------------------------------------------------QTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred e------------------------------------------------------EEEEecCCcccEEEEecCCCCCCeE
Confidence 1 1133558999999999999 99999
Q ss_pred EEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc--
Q 005315 469 AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-- 544 (702)
Q Consensus 469 ~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~-- 544 (702)
++++-|+ ..++||++.+. .+.++.+| .|++++|.|+|.-+++++. |++.++||++..+.+....
T Consensus 203 vSg~cD~---~aklWD~R~~~------c~qtF~ghesDINsv~ffP~G~afatGSD---D~tcRlyDlRaD~~~a~ys~~ 270 (343)
T KOG0286|consen 203 VSGGCDK---SAKLWDVRSGQ------CVQTFEGHESDINSVRFFPSGDAFATGSD---DATCRLYDLRADQELAVYSHD 270 (343)
T ss_pred Eeccccc---ceeeeeccCcc------eeEeecccccccceEEEccCCCeeeecCC---CceeEEEeecCCcEEeeeccC
Confidence 9999999 89999998775 77788877 6999999999999999998 9999999999776666533
Q ss_pred --cCceeeeEECCCCCEEEEEEeecccccccEEEEEe-ccceeeee--ccccEeeEEEeeCCCCCCChhhHHHHHH
Q 005315 545 --HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF-NGKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIAK 615 (702)
Q Consensus 545 --~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~-~g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~~ 615 (702)
..+|++++||..||+|+.|.. |.++.+||. .++..-.+ |..+|.++..+|+|..++|++-|..+|-
T Consensus 271 ~~~~gitSv~FS~SGRlLfagy~-----d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 271 SIICGITSVAFSKSGRLLFAGYD-----DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred cccCCceeEEEcccccEEEeeec-----CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 367899999999999999988 999999994 46554443 7799999999999999999999988763
No 21
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.1e-29 Score=254.41 Aligned_cols=402 Identities=15% Similarity=0.228 Sum_probs=279.7
Q ss_pred CCceEEEEeCCceEEEecCCCCCCCcccc--cCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee--cCCC
Q 005315 171 ARDQFVIRSGTDTEVLWNDARHLKPEPVY--KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQ 245 (702)
Q Consensus 171 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~ 245 (702)
+..++++......+.+||. +.+.....+ .+....++|+.-+|+.-.||.|..|| |+||+.. +.....+| |...
T Consensus 32 ~~Gr~va~~a~E~vn~Wdl-Rtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~-s~~~~~tfngHK~A 109 (888)
T KOG0306|consen 32 GKGRAVAVSALEQVNIWDL-RTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLE-SEEILITFNGHKAA 109 (888)
T ss_pred CCCcEEEEeccccEeEEee-ecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccC-CCceeeeecccccc
Confidence 4456666656667779999 566433332 34446899999999999999999999 7899999 77888888 4446
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
|+++.|+..|..|++|+.| +.|.|||+-...-+..+.+|...++ ..-|.. +.++++
T Consensus 110 Vt~l~fd~~G~rlaSGskD----------t~IIvwDlV~E~Gl~rL~GHkd~iT-------------~~~F~~-~~~~lv 165 (888)
T KOG0306|consen 110 VTTLKFDKIGTRLASGSKD----------TDIIVWDLVGEEGLFRLRGHKDSIT-------------QALFLN-GDSFLV 165 (888)
T ss_pred eEEEEEcccCceEeecCCC----------ccEEEEEeccceeeEEeecchHHHh-------------HHhccC-CCeEEE
Confidence 9999999999999999999 9999999977777889999998874 456666 788999
Q ss_pred Eec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc--------------
Q 005315 326 KLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-------------- 390 (702)
Q Consensus 326 ~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-------------- 390 (702)
+++ |+.|++||+.+..+......|...+..+++.+ +.+++ ++.+...++|.+..+..+
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt-----~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~ 238 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVT-----AGTDSELKVWELAFEDDEKETNRYISTKLRGT 238 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEE-----EecCCceEEEEeecccccccccccceeeccce
Confidence 888 99999999998877766656666677777776 34444 445555555554221100
Q ss_pred --------ee-----------e-----------------------ee-------eec-----------------------
Q 005315 391 --------EL-----------R-----------------------QK-------NLF----------------------- 398 (702)
Q Consensus 391 --------~~-----------~-----------------------~~-------~~~----------------------- 398 (702)
.+ . .+ ...
T Consensus 239 ~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir 318 (888)
T KOG0306|consen 239 FIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR 318 (888)
T ss_pred eeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence 00 0 00 000
Q ss_pred -ccccceeEEccCCCEE---EEEEc--------cc-ccc-------------------------------cccccccEEE
Q 005315 399 -SVSDCKMYWQSSGDYL---AVKVD--------RY-TKT-------------------------------KKSTYTGFEL 434 (702)
Q Consensus 399 -~~~~~~~~~s~~g~~l---~~~~~--------~~-~~~-------------------------------~~~~~~~~~l 434 (702)
......+.|-|.+... +...+ .. .++ .......+.+
T Consensus 319 ~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Siki 398 (888)
T KOG0306|consen 319 TSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKI 398 (888)
T ss_pred chhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEE
Confidence 0001112232222110 00000 00 000 0001123455
Q ss_pred EEEecCC----------------------------cceeE---------EEecCCCCceeEEEEeeCCcEEEEEEcCCCC
Q 005315 435 FRIKERD----------------------------IPIEV---------LELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 477 (702)
Q Consensus 435 ~~l~~~~----------------------------~~~~~---------~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 477 (702)
|...... ..... -.+++|.+.|.+++.+||++.+++++.|.
T Consensus 399 Wn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk-- 476 (888)
T KOG0306|consen 399 WNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK-- 476 (888)
T ss_pred EEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc--
Confidence 5443110 00011 12348999999999999999999999999
Q ss_pred CeEEEEEeecccC-cCceEE------EEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCc
Q 005315 478 PDISFYSMRTAQH-AGRVSK------LTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFM 547 (702)
Q Consensus 478 ~~v~i~d~~~~~~-~~~~~~------~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~ 547 (702)
+|+||+..-... ....+. .+++. ...+.++.+||||++|+++-. |+++++|-+++.+...+ +|.-+
T Consensus 477 -tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL---dnTVkVyflDtlKFflsLYGHkLP 552 (888)
T KOG0306|consen 477 -TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL---DNTVKVYFLDTLKFFLSLYGHKLP 552 (888)
T ss_pred -EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec---cCeEEEEEecceeeeeeecccccc
Confidence 999999863211 000111 11222 236899999999999999998 99999999998877655 78899
Q ss_pred eeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeee--ccccEeeEEEeeCCCCCCChhhHHHHHHH
Q 005315 548 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIAKN 616 (702)
Q Consensus 548 i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~~~ 616 (702)
|.++..|||++.++|||. |..|+||-++ |..-... |.+.|.++.|-|+...++|++.|+.+|.+
T Consensus 553 V~smDIS~DSklivTgSA-----DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSA-----DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred eeEEeccCCcCeEEeccC-----CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence 999999999999999999 9999999988 4443333 66999999999999999999999988744
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=7.9e-29 Score=239.83 Aligned_cols=312 Identities=16% Similarity=0.266 Sum_probs=241.6
Q ss_pred CCCCceEEEEeCCceEEEecCCC-CCCCc--cccc----------CCCcccceEEECCCCcEEEEEeCCc-eEEeecCcC
Q 005315 169 EKARDQFVIRSGTDTEVLWNDAR-HLKPE--PVYK----------RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANT 234 (702)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~w~~~~-~~~~~--~~~~----------~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~ 234 (702)
|-....++...++.+..+|++.. ..... ..+. ..+..|++++|+.+|+.||+|+.+| ++||+..+.
T Consensus 188 P~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~ 267 (524)
T KOG0273|consen 188 PLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN 267 (524)
T ss_pred chhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCch
Confidence 43333677777888889999852 11111 1111 1236799999999999999999999 789999844
Q ss_pred cceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceE
Q 005315 235 FNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 235 ~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 314 (702)
......+|..+|.++.|+.+|+||++++.| +++.+||..+|.....|..|..+.. .+
T Consensus 268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD----------~ttilwd~~~g~~~q~f~~~s~~~l-------------DV 324 (524)
T KOG0273|consen 268 LISTLGQHKGPIFSLKWNKKGTYILSGGVD----------GTTILWDAHTGTVKQQFEFHSAPAL-------------DV 324 (524)
T ss_pred hhhhhhccCCceEEEEEcCCCCEEEeccCC----------ccEEEEeccCceEEEeeeeccCCcc-------------ce
Confidence 334444455569999999999999999999 9999999999999999988876521 46
Q ss_pred EEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 315 RWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 315 ~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
.|-. +..+..+..|+.|+||.+.....+.++..|...|..+.|.|.|.+|++ ++.|++.+||-.... .....
T Consensus 325 dW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS-----~SdD~TlkiWs~~~~--~~~~~ 396 (524)
T KOG0273|consen 325 DWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS-----CSDDGTLKIWSMGQS--NSVHD 396 (524)
T ss_pred EEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE-----ecCCCeeEeeecCCC--cchhh
Confidence 7776 655555555999999999988888888889999999999999999999 889999988764322 22222
Q ss_pred eeecccccceeEEccCCC---------EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC
Q 005315 395 KNLFSVSDCKMYWQSSGD---------YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG 465 (702)
Q Consensus 395 ~~~~~~~~~~~~~s~~g~---------~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g 465 (702)
...+......+.|+|.|. .++.++.+.+ +.+|++... +....+..|..+|.+++|||+|
T Consensus 397 l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst---------V~lwdv~~g---v~i~~f~kH~~pVysvafS~~g 464 (524)
T KOG0273|consen 397 LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST---------VKLWDVESG---VPIHTLMKHQEPVYSVAFSPNG 464 (524)
T ss_pred hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe---------EEEEEccCC---ceeEeeccCCCceEEEEecCCC
Confidence 222344455567887653 5666766666 788888642 2335577899999999999999
Q ss_pred cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC-ceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 466 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 466 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
+++|+++.|+ .|.||+.+++. .++.+.+. .|..++|+.+|.+|..+.. ||.+++.|+.
T Consensus 465 ~ylAsGs~dg---~V~iws~~~~~------l~~s~~~~~~Ifel~Wn~~G~kl~~~~s---d~~vcvldlr 523 (524)
T KOG0273|consen 465 RYLASGSLDG---CVHIWSTKTGK------LVKSYQGTGGIFELCWNAAGDKLGACAS---DGSVCVLDLR 523 (524)
T ss_pred cEEEecCCCC---eeEeccccchh------eeEeecCCCeEEEEEEcCCCCEEEEEec---CCCceEEEec
Confidence 9999999999 99999998765 67777644 6899999999999988887 9999998875
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=222.59 Aligned_cols=282 Identities=18% Similarity=0.374 Sum_probs=223.9
Q ss_pred cccccCCCcccceEEECCC-CcEEEEEeCCc-eEEeecCc--Ccceeeee---cCCCeeEEEecCCCCEEEEEcCCCCCC
Q 005315 196 EPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGAN--TFNRLMRY---AHPQVKLIDFSPGEKYLVTYSSHEPSN 268 (702)
Q Consensus 196 ~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~--~~~~~~~~---~~~~v~~i~fSpdg~~l~t~s~d~~~~ 268 (702)
+..+++|...+..++|+|- |..||+++.+. |+||+..+ +..+...+ |...|++++|||.|+||+++|.|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD---- 82 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD---- 82 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc----
Confidence 4567899999999999998 99999999999 89999872 23333333 34459999999999999999999
Q ss_pred CcCCCccEEEEEEccCC--cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCc---cc
Q 005315 269 PRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF---TL 342 (702)
Q Consensus 269 ~~~~~~~~i~vwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~---~~ 342 (702)
.++.||.-..+ +++.++.+|...+. +++||+ +|.|||+++ |+.|.||.+... .+
T Consensus 83 ------~t~~Iw~k~~~efecv~~lEGHEnEVK-------------~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 83 ------ATVVIWKKEDGEFECVATLEGHENEVK-------------CVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred ------ceEEEeecCCCceeEEeeeecccccee-------------EEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence 99999985444 68899999998874 899999 999999999 999999998844 34
Q ss_pred ccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccc
Q 005315 343 IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 422 (702)
Q Consensus 343 ~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 422 (702)
+.....|...|..+.|+|...+|++ ++-|.++++|..+ +++.+.++
T Consensus 143 ~aVL~~HtqDVK~V~WHPt~dlL~S-----~SYDnTIk~~~~~-----------------------~dddW~c~------ 188 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHPTEDLLFS-----CSYDNTIKVYRDE-----------------------DDDDWECV------ 188 (312)
T ss_pred EeeeccccccccEEEEcCCcceeEE-----eccCCeEEEEeec-----------------------CCCCeeEE------
Confidence 5555678888999999999999998 7788888776432 13333332
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC
Q 005315 423 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG 502 (702)
Q Consensus 423 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 502 (702)
..+.+|...|.+++|+|.|.+|++++.|+ +|+||...+ .+..++.
T Consensus 189 ------------------------~tl~g~~~TVW~~~F~~~G~rl~s~sdD~---tv~Iw~~~~--------~~~~~~s 233 (312)
T KOG0645|consen 189 ------------------------QTLDGHENTVWSLAFDNIGSRLVSCSDDG---TVSIWRLYT--------DLSGMHS 233 (312)
T ss_pred ------------------------EEecCccceEEEEEecCCCceEEEecCCc---ceEeeeecc--------Ccchhcc
Confidence 34557788999999999999999999999 999999642 2333445
Q ss_pred CceeEEEEccCCCEEEEEeccCCCceEEEEECCC------cceee---ecccCceeeeEECCC-CCEEEEEEeecccccc
Q 005315 503 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE------LETMA---TAEHFMATDVEWDPT-GRYVATAVTSVHEMEN 572 (702)
Q Consensus 503 ~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~------~~~~~---~~~~~~i~~~~~spd-g~~l~t~s~~~~~~d~ 572 (702)
.+++.+.|. + ..|++++. |+.|++|.-.. .+++. ..|...|++++|+|. ...|++++. ||
T Consensus 234 r~~Y~v~W~-~-~~IaS~gg---D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D-----DG 303 (312)
T KOG0645|consen 234 RALYDVPWD-N-GVIASGGG---DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD-----DG 303 (312)
T ss_pred cceEeeeec-c-cceEeccC---CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC-----Cc
Confidence 678999998 4 47788876 99999997653 22222 256678999999996 557888888 99
Q ss_pred cEEEEEec
Q 005315 573 GFNIWSFN 580 (702)
Q Consensus 573 ~v~iw~~~ 580 (702)
.+++|.+.
T Consensus 304 ~v~~W~l~ 311 (312)
T KOG0645|consen 304 IVNFWELE 311 (312)
T ss_pred eEEEEEec
Confidence 99999864
No 24
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=241.16 Aligned_cols=285 Identities=16% Similarity=0.267 Sum_probs=211.5
Q ss_pred CCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCc--Ccceeeee--cCCCeeEEEecCCCCEEEEEcCCCCC
Q 005315 193 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN--TFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPS 267 (702)
Q Consensus 193 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~--~~~~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~ 267 (702)
.+....++.|...|+.++||++|+|||+++.+. ..+|.+.. ..+...++ ++..|..+.||||.+||++|+.+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~--- 290 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD--- 290 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch---
Confidence 344456789999999999999999999999999 55887652 22334444 45579999999999999999999
Q ss_pred CCcCCCccEEEEEEccCCcEEeeccCCC-cccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccc
Q 005315 268 NPRDANRVVINIFDVRTGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 345 (702)
Q Consensus 268 ~~~~~~~~~i~vwd~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~ 345 (702)
..+++||+.+|.+.+.+.... ..+ .+++|.| ||..+++|+ |+++..|+++....-.-
T Consensus 291 -------e~~~lwDv~tgd~~~~y~~~~~~S~-------------~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W 349 (519)
T KOG0293|consen 291 -------EVLSLWDVDTGDLRHLYPSGLGFSV-------------SSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNW 349 (519)
T ss_pred -------HheeeccCCcchhhhhcccCcCCCc-------------ceeEEcc-CCceeEecCCCCcEEEecCCcchhhcc
Confidence 789999999999888876552 222 1789999 999999999 99999999985432221
Q ss_pred eeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccc
Q 005315 346 KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 425 (702)
Q Consensus 346 ~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 425 (702)
.-...+.|.+++.++||+++... +.+..++ +++...+..
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v-----~~d~~i~--l~~~e~~~d---------------------------------- 388 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLV-----TVDKKIR--LYNREARVD---------------------------------- 388 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEE-----eccccee--eechhhhhh----------------------------------
Confidence 22344568899999999988872 2333322 222111000
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCc-
Q 005315 426 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ- 504 (702)
Q Consensus 426 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~- 504 (702)
...++. ..+|++++.|.+|+++++.-.+. .+.+||++... .+..+.++.
T Consensus 389 ------------------r~lise---~~~its~~iS~d~k~~LvnL~~q---ei~LWDl~e~~------lv~kY~Ghkq 438 (519)
T KOG0293|consen 389 ------------------RGLISE---EQPITSFSISKDGKLALVNLQDQ---EIHLWDLEENK------LVRKYFGHKQ 438 (519)
T ss_pred ------------------hccccc---cCceeEEEEcCCCcEEEEEcccC---eeEEeecchhh------HHHHhhcccc
Confidence 001122 67899999999999999988888 89999997433 445555442
Q ss_pred ---eeEEEEc-cCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCC-EEEEEEeecccccccEEEE
Q 005315 505 ---ANALFWS-PSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIW 577 (702)
Q Consensus 505 ---v~~~~~s-pdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~-~l~t~s~~~~~~d~~v~iw 577 (702)
+-.-+|- .+..++++|+. |+.|+||+..+++++.. +|...|++++|+|... .+|+++. ||+|+||
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSE---D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD-----DgtIRIW 510 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSE---DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD-----DGTIRIW 510 (519)
T ss_pred cceEEEeccCCCCcceEEecCC---CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC-----CCeEEEe
Confidence 2222333 34578999988 99999999999999875 7889999999999765 6788888 9999999
Q ss_pred Eec
Q 005315 578 SFN 580 (702)
Q Consensus 578 ~~~ 580 (702)
...
T Consensus 511 g~~ 513 (519)
T KOG0293|consen 511 GPS 513 (519)
T ss_pred cCC
Confidence 764
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.4e-28 Score=217.74 Aligned_cols=285 Identities=12% Similarity=0.146 Sum_probs=221.5
Q ss_pred EEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCceEEeecCcCcc-eeeeec-C-CCeeEEEecC
Q 005315 177 IRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFN-RLMRYA-H-PQVKLIDFSP 253 (702)
Q Consensus 177 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~-~~~~~~-~-~~v~~i~fSp 253 (702)
..+-|.++.+|.. .++.+...++.....|+.+..+||+++||.++...|++||+.++.. ++.+|. | .+|..+.|.-
T Consensus 15 sA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 15 SAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC 93 (311)
T ss_pred eccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee
Confidence 3344778889998 7899999999988999999999999999999999999999983332 577773 3 5699999999
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeE
Q 005315 254 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMI 332 (702)
Q Consensus 254 dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i 332 (702)
+|+.++||+.| |+++|||++.-.+.+.|... .++. ++...| +..-|+++. +|.|
T Consensus 94 dgrWMyTgseD----------gt~kIWdlR~~~~qR~~~~~-spVn-------------~vvlhp-nQteLis~dqsg~i 148 (311)
T KOG0315|consen 94 DGRWMYTGSED----------GTVKIWDLRSLSCQRNYQHN-SPVN-------------TVVLHP-NQTELISGDQSGNI 148 (311)
T ss_pred cCeEEEecCCC----------ceEEEEeccCcccchhccCC-CCcc-------------eEEecC-CcceEEeecCCCcE
Confidence 99999999999 99999999997777777655 3332 778899 877788888 9999
Q ss_pred EEEecCCcccccceee-ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCC
Q 005315 333 SVYETESFTLIDKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG 411 (702)
Q Consensus 333 ~v~d~~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 411 (702)
+|||+..........- ....|.++...|+|..++. .+..++.+.|++.......
T Consensus 149 rvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a-------~nnkG~cyvW~l~~~~~~s------------------ 203 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA-------ANNKGNCYVWRLLNHQTAS------------------ 203 (311)
T ss_pred EEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE-------ecCCccEEEEEccCCCccc------------------
Confidence 9999986644332211 1235889999999999987 5555566666654311100
Q ss_pred CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCc
Q 005315 412 DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA 491 (702)
Q Consensus 412 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~ 491 (702)
.-.....+++|.+.+..+.+||++++||+++.|. +++||+.++.
T Consensus 204 ------------------------------~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk---tv~iwn~~~~--- 247 (311)
T KOG0315|consen 204 ------------------------------ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK---TVKIWNTDDF--- 247 (311)
T ss_pred ------------------------------cceEhhheecccceEEEEEECCCCcEEEeecCCc---eEEEEecCCc---
Confidence 0001123668899999999999999999999999 9999998654
Q ss_pred CceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEE
Q 005315 492 GRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEW 553 (702)
Q Consensus 492 ~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~ 553 (702)
++.-..+.+| .+...+||.||+||++++. |+.+++|++..++.+.. +|+....+++.
T Consensus 248 --~kle~~l~gh~rWvWdc~FS~dg~YlvTass---d~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 248 --FKLELVLTGHQRWVWDCAFSADGEYLVTASS---DHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred --eeeEEEeecCCceEEeeeeccCccEEEecCC---CCceeecccccCceeeecCCcccccEEEEe
Confidence 1244445555 7899999999999999998 99999999999887654 66666666554
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=9.5e-28 Score=219.88 Aligned_cols=288 Identities=13% Similarity=0.164 Sum_probs=221.9
Q ss_pred CCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceee--eecCCCeeEEEecCCCCEEEEEcCCCCCCC
Q 005315 193 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM--RYAHPQVKLIDFSPGEKYLVTYSSHEPSNP 269 (702)
Q Consensus 193 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~--~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~ 269 (702)
..|+..+.+|.+.|+.+.|+|+|++||+|+.|. |.||++.+..+-.. +.|...|..+.|.+|+..|++++.|
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtD----- 111 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTD----- 111 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCC-----
Confidence 346677899999999999999999999999998 88999764433322 3344459999999999999999999
Q ss_pred cCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC-cEEEEec-CCeEEEEecCCccccccee
Q 005315 270 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKS 347 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg-~~la~~~-d~~i~v~d~~~~~~~~~~~ 347 (702)
.+|+.||+.+|+.++.+++|...+. .+.-+. -| .++.+++ |+++++||+.+...+....
T Consensus 112 -----k~v~~wD~~tG~~~rk~k~h~~~vN-------------s~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~ 172 (338)
T KOG0265|consen 112 -----KTVRGWDAETGKRIRKHKGHTSFVN-------------SLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFE 172 (338)
T ss_pred -----ceEEEEecccceeeehhccccceee-------------ecCccc-cCCeEEEecCCCceEEEEeecccchhhccc
Confidence 9999999999999999999987653 222222 23 4566666 9999999999776654332
Q ss_pred eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccc
Q 005315 348 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 348 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
.+ -.+..+.|...+..+.+ |+-|+.+++|.
T Consensus 173 ~k-yqltAv~f~d~s~qv~s-----ggIdn~ikvWd-------------------------------------------- 202 (338)
T KOG0265|consen 173 NK-YQLTAVGFKDTSDQVIS-----GGIDNDIKVWD-------------------------------------------- 202 (338)
T ss_pred cc-eeEEEEEecccccceee-----ccccCceeeec--------------------------------------------
Confidence 22 23778888888777776 66666655443
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC----
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK---- 503 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---- 503 (702)
++.... ...+.+|.++|+.++.+|+|.++.+-+.|. ++++||++.-....++..+..-..|
T Consensus 203 ---------~r~~d~---~~~lsGh~DtIt~lsls~~gs~llsnsMd~---tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 203 ---------LRKNDG---LYTLSGHADTITGLSLSRYGSFLLSNSMDN---TVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred ---------cccCcc---eEEeecccCceeeEEeccCCCccccccccc---eEEEEEecccCCCCceEEEeecchhhhhh
Confidence 221111 123558999999999999999999999998 9999999865444444444332222
Q ss_pred ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEE
Q 005315 504 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIW 577 (702)
Q Consensus 504 ~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw 577 (702)
..-.++|||+++++..++. |..+++||......+.. +|.+.|++++|+|.-.+|.+++. |.++++=
T Consensus 268 nlL~cswsp~~~~i~ags~---dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s-----dk~i~lg 335 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSA---DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS-----DKTIYLG 335 (338)
T ss_pred hcceeeccCCCCccccccc---cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc-----CceeEee
Confidence 2456899999999999988 99999999998777664 77799999999999999999999 8888763
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-28 Score=229.94 Aligned_cols=305 Identities=18% Similarity=0.297 Sum_probs=247.7
Q ss_pred CCCCCCCCCCCCCCCCCcc---ccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEE
Q 005315 143 KVPDEWAPPEHKPYTPGEN---LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLA 219 (702)
Q Consensus 143 ~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~la 219 (702)
+.|..|.|++..++...++ +...+++|. +...+....+.+..+|+. .+++.+..+++|...+..++|+..|++||
T Consensus 89 ~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~-~tg~~e~~LrGHt~sv~di~~~a~Gk~l~ 166 (406)
T KOG0295|consen 89 RTPALWIPRPNLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDT-ETGELERSLRGHTDSVFDISFDASGKYLA 166 (406)
T ss_pred cChhhcCCCCCchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEc-cchhhhhhhhccccceeEEEEecCccEEE
Confidence 3677899888776654443 334455553 334444556778889998 57888899999999999999999999999
Q ss_pred EEeCCc-eEEeecCcCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCc
Q 005315 220 TVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD 296 (702)
Q Consensus 220 t~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~ 296 (702)
+++.|- +.+||..+.+.++.... |. .|.++.|-|.|.+|++++.| .+|+.|++.+|-++.+|.+|..
T Consensus 167 tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD----------~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD----------NTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred ecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc----------cceeEEecccceeEEeccCchH
Confidence 999998 88999994455555442 33 49999999999999999999 9999999999999999999987
Q ss_pred ccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCC
Q 005315 297 EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG 375 (702)
Q Consensus 297 ~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~ 375 (702)
-+. .++.+. ||.++|+++ |.+|++|-+.++.+......|...|.+++|.|...+-.+ .
T Consensus 237 wvr-------------~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i-------~ 295 (406)
T KOG0295|consen 237 WVR-------------MVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI-------S 295 (406)
T ss_pred hEE-------------EEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch-------h
Confidence 653 678888 999999999 999999999999777767778888999999885431111 0
Q ss_pred CCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc
Q 005315 376 NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK 455 (702)
Q Consensus 376 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~ 455 (702)
+. . + ...
T Consensus 296 ~a------------------------------t------------------------------------------~-~~~ 302 (406)
T KOG0295|consen 296 EA------------------------------T------------------------------------------G-STN 302 (406)
T ss_pred hc------------------------------c------------------------------------------C-CCC
Confidence 00 0 0 000
Q ss_pred eeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEE
Q 005315 456 IIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYN 533 (702)
Q Consensus 456 v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d 533 (702)
.++++.+++.|+ +|++||+.++. .+.++.+| .|..++|+|.|+||+++.. |++|++||
T Consensus 303 --------~~~~l~s~SrDk---tIk~wdv~tg~------cL~tL~ghdnwVr~~af~p~Gkyi~ScaD---Dktlrvwd 362 (406)
T KOG0295|consen 303 --------GGQVLGSGSRDK---TIKIWDVSTGM------CLFTLVGHDNWVRGVAFSPGGKYILSCAD---DKTLRVWD 362 (406)
T ss_pred --------CccEEEeecccc---eEEEEeccCCe------EEEEEecccceeeeeEEcCCCeEEEEEec---CCcEEEEE
Confidence 456788888999 99999998765 88888776 6999999999999999998 99999999
Q ss_pred CCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 534 VDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 534 ~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
+++++++.+ .|..-++++.|..+--|+++|+- |..+++|.
T Consensus 363 l~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV-----dqt~KvwE 404 (406)
T KOG0295|consen 363 LKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV-----DQTVKVWE 404 (406)
T ss_pred eccceeeeccCCCcceeEEEecCCCCceEEeccc-----cceeeeee
Confidence 999999876 56678999999999999999999 99999996
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=224.53 Aligned_cols=319 Identities=14% Similarity=0.135 Sum_probs=239.1
Q ss_pred cCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee--cC
Q 005315 167 TDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AH 243 (702)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~ 243 (702)
.+| .....+.++++....+|.. ..+.....+++|+.+|+|+.||.||+|||||.-+| |.||... ++.....+ ..
T Consensus 72 l~P-~~~l~aTGGgDD~AflW~~-~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s-tg~~~~~~~~e~ 148 (399)
T KOG0296|consen 72 LHP-NNNLVATGGGDDLAFLWDI-STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS-TGGEQWKLDQEV 148 (399)
T ss_pred eCC-CCceEEecCCCceEEEEEc-cCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc-cCceEEEeeccc
Confidence 345 3445567778899999999 56667778899999999999999999999999999 8899999 66655555 45
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
..+.-+.|+|-+..|+.|+.| |.|.+|.+.++...+.+.+|..+.+ +=.|.| +|+.
T Consensus 149 ~dieWl~WHp~a~illAG~~D----------GsvWmw~ip~~~~~kv~~Gh~~~ct-------------~G~f~p-dGKr 204 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTD----------GSVWMWQIPSQALCKVMSGHNSPCT-------------CGEFIP-DGKR 204 (399)
T ss_pred CceEEEEecccccEEEeecCC----------CcEEEEECCCcceeeEecCCCCCcc-------------cccccC-CCce
Confidence 568999999999999999999 9999999999888999999987764 558999 9999
Q ss_pred EEEec-CCeEEEEecCCcccccceeecc-CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccc
Q 005315 324 FAKLG-KNMISVYETESFTLIDKKSLKV-ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 401 (702)
Q Consensus 324 la~~~-d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 401 (702)
++++. |++|++|+..++..+.+....- ....++.++..+..+.. |+.++.+. .....+++.+...+
T Consensus 205 ~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~-----g~~e~~~~--~~~~~sgKVv~~~n----- 272 (399)
T KOG0296|consen 205 ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK-----GNSEGVAC--GVNNGSGKVVNCNN----- 272 (399)
T ss_pred EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe-----ccCCccEE--EEccccceEEEecC-----
Confidence 99999 9999999999998775443211 12456677777776665 44444433 22222222111100
Q ss_pred cceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEE
Q 005315 402 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 481 (702)
Q Consensus 402 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 481 (702)
+ ..|............|.++.|+..-..+|+++-|| +|.
T Consensus 273 -------~-------------------------------~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG---~i~ 311 (399)
T KOG0296|consen 273 -------G-------------------------------TVPELKPSQEELDESVESIPSSSKLPLAACGSVDG---TIA 311 (399)
T ss_pred -------C-------------------------------CCccccccchhhhhhhhhcccccccchhhcccccc---eEE
Confidence 0 00100001101133455566666677889999999 999
Q ss_pred EEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCC
Q 005315 482 FYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGR 558 (702)
Q Consensus 482 i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~ 558 (702)
|||+..... -+... ...|..+.|-+ ..+|++++. +|.|+.||.++|+++.+ +|...|.+++.+|+++
T Consensus 312 iyD~a~~~~------R~~c~he~~V~~l~w~~-t~~l~t~c~---~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~ 381 (399)
T KOG0296|consen 312 IYDLAASTL------RHICEHEDGVTKLKWLN-TDYLLTACA---NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKR 381 (399)
T ss_pred EEecccchh------heeccCCCceEEEEEcC-cchheeecc---CceEEeeeccccceEEEEecCchheeEEEEcCCCc
Confidence 999965432 12222 33699999999 789999988 99999999999998865 7889999999999999
Q ss_pred EEEEEEeecccccccEEEEEec
Q 005315 559 YVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 559 ~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+++|+|. |+..+||...
T Consensus 382 ~vvT~s~-----D~~a~VF~v~ 398 (399)
T KOG0296|consen 382 LVVTVSD-----DNTALVFEVP 398 (399)
T ss_pred EEEEecC-----CCeEEEEecC
Confidence 9999999 9999999753
No 29
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.7e-29 Score=244.11 Aligned_cols=287 Identities=18% Similarity=0.300 Sum_probs=233.3
Q ss_pred CCCcccccCCCcccceEEECC-CCcEEEEEeCCc-eEEeecCcCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005315 193 LKPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSN 268 (702)
Q Consensus 193 ~~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~ 268 (702)
.+.+..+.+|+..|+++.|.| .|.+|++++.|+ |.||++-+.+.++.+| +|. .|..++||++|..+++++.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD---- 279 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD---- 279 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc----
Confidence 455677899999999999999 899999999999 8899998567888888 344 59999999999999999999
Q ss_pred CcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC-cEEEEec-CCeEEEEecCCcccccce
Q 005315 269 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKK 346 (702)
Q Consensus 269 ~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg-~~la~~~-d~~i~v~d~~~~~~~~~~ 346 (702)
+.|++||+.||+++..|....... |+.|.| |+ +.|.+|+ |+.|..||+.+++++...
T Consensus 280 ------~~lKlwDtETG~~~~~f~~~~~~~--------------cvkf~p-d~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 280 ------RFLKLWDTETGQVLSRFHLDKVPT--------------CVKFHP-DNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred ------eeeeeeccccceEEEEEecCCCce--------------eeecCC-CCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 999999999999999998766554 899999 88 5555565 999999999999999888
Q ss_pred eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccc
Q 005315 347 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 426 (702)
Q Consensus 347 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 426 (702)
.-|.+.|..+.|-++|+.+++ .+.+...+||.++++..-...
T Consensus 339 d~hLg~i~~i~F~~~g~rFis-----sSDdks~riWe~~~~v~ik~i--------------------------------- 380 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEGRRFIS-----SSDDKSVRIWENRIPVPIKNI--------------------------------- 380 (503)
T ss_pred HhhhhheeeeEEccCCceEee-----eccCccEEEEEcCCCccchhh---------------------------------
Confidence 889999999999999999998 778888888887764321000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCc--
Q 005315 427 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-- 504 (702)
Q Consensus 427 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-- 504 (702)
...+.....++..+|++++++.-+.+. .+.+|.+...- +...-+.+.+|.
T Consensus 381 ----------------------~~~~~hsmP~~~~~P~~~~~~aQs~dN---~i~ifs~~~~~---r~nkkK~feGh~va 432 (503)
T KOG0282|consen 381 ----------------------ADPEMHTMPCLTLHPNGKWFAAQSMDN---YIAIFSTVPPF---RLNKKKRFEGHSVA 432 (503)
T ss_pred ----------------------cchhhccCcceecCCCCCeehhhccCc---eEEEEeccccc---ccCHhhhhcceecc
Confidence 001122345677889999999888887 88888864221 111233444553
Q ss_pred --eeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCC-EEEEEEeecccccccEEEEE
Q 005315 505 --ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 505 --v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~ 578 (702)
...+.|||||++|++|.. +|.+.+||.++.+++.. .|..+++.+.|.|... .+|+++. ||.|++|+
T Consensus 433 Gys~~v~fSpDG~~l~SGds---dG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w-----~G~Ikiwd 503 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDS---DGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGW-----DGLIKIWD 503 (503)
T ss_pred CceeeEEEcCCCCeEEeecC---CccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEeccc-----CceeEecC
Confidence 356999999999999988 99999999999888765 6678999999999765 6888888 99999996
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=3.5e-29 Score=238.04 Aligned_cols=274 Identities=18% Similarity=0.356 Sum_probs=218.5
Q ss_pred CcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc--eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005315 203 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 279 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v 279 (702)
...|..|.|.|+|+.|++|+..| +.||++. ++. .+..-|...|+++.||++|.++++|+.+ |.|++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g----------G~iKy 164 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHNGTWMISGDKG----------GMIKY 164 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccCCCEEEEcCCC----------ceEEe
Confidence 46789999999999999999999 8899987 443 3333344459999999999999999999 99999
Q ss_pred EEccCCcEEeeccCCC-cccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEE
Q 005315 280 FDVRTGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFS 357 (702)
Q Consensus 280 wd~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 357 (702)
|+. +...++.+..|. ..+. +++||| ++..|++++ ||+|+|||....+.......|.-.|.+++
T Consensus 165 Wqp-nmnnVk~~~ahh~eaIR-------------dlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 165 WQP-NMNNVKIIQAHHAEAIR-------------DLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD 229 (464)
T ss_pred ccc-chhhhHHhhHhhhhhhh-------------eeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence 995 566677777766 4442 789999 888888888 99999999887766555667777799999
Q ss_pred eCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEE
Q 005315 358 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 437 (702)
Q Consensus 358 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 437 (702)
|+|.-..|++ +|.|+.++ +||..+.. .|
T Consensus 230 WHP~kgLias-----gskDnlVK--lWDprSg~----------------------cl----------------------- 257 (464)
T KOG0284|consen 230 WHPTKGLIAS-----GSKDNLVK--LWDPRSGS----------------------CL----------------------- 257 (464)
T ss_pred cCCccceeEE-----ccCCceeE--eecCCCcc----------------------hh-----------------------
Confidence 9999999998 77777544 33332222 21
Q ss_pred ecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCC
Q 005315 438 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGR 515 (702)
Q Consensus 438 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~ 515 (702)
.++..|+..|..+.|+|++++|++++.|. .+++||+++.+ .+.++.+| .++++.|+|-..
T Consensus 258 ---------~tlh~HKntVl~~~f~~n~N~Llt~skD~---~~kv~DiR~mk------El~~~r~Hkkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 258 ---------ATLHGHKNTVLAVKFNPNGNWLLTGSKDQ---SCKVFDIRTMK------ELFTYRGHKKDVTSLTWHPLNE 319 (464)
T ss_pred ---------hhhhhccceEEEEEEcCCCCeeEEccCCc---eEEEEehhHhH------HHHHhhcchhhheeeccccccc
Confidence 22447789999999999999999999999 99999998544 45555555 689999999665
Q ss_pred -EEEEEeccCCCceEEEEECCCccee---eecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 516 -FIVLAGLKGFNGQLEFYNVDELETM---ATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 516 -~l~~~~~~~~dg~v~i~d~~~~~~~---~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
.+.+++. ||.|.+|.+...+.+ ..+|...|++++|.|=|..|++|+. |.++++|.-.
T Consensus 320 ~lftsgg~---Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn-----d~t~rfw~r~ 380 (464)
T KOG0284|consen 320 SLFTSGGS---DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN-----DRTVRFWTRN 380 (464)
T ss_pred cceeeccC---CCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC-----CcceeeeccC
Confidence 4555666 999999998843333 3477799999999999999999999 9999999754
No 31
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=9.9e-28 Score=215.43 Aligned_cols=284 Identities=16% Similarity=0.275 Sum_probs=232.1
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee----cCCCeeEEEecCC-CCEEEEEcCCCCCCCc
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY----AHPQVKLIDFSPG-EKYLVTYSSHEPSNPR 270 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~----~~~~v~~i~fSpd-g~~l~t~s~d~~~~~~ 270 (702)
..+++|...+.+|+|+.+|+.||+|+.++ +.+|++. ........ ++..|-.++|+|. ...+++++.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e-~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d------ 86 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLE-RDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD------ 86 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEec-chhhhhhhcccCCCcchhhheeCCCCCcceEEecCC------
Confidence 45678899999999999999999999999 7899998 54433333 3445888999885 4688999999
Q ss_pred CCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeec
Q 005315 271 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 349 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~ 349 (702)
.+|++||++++++..........+ .+.|+| +|.+++.++ |..|.+.|..+.+........
T Consensus 87 ----k~ir~wd~r~~k~~~~i~~~~eni--------------~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~ 147 (313)
T KOG1407|consen 87 ----KTIRIWDIRSGKCTARIETKGENI--------------NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFK 147 (313)
T ss_pred ----ceEEEEEeccCcEEEEeeccCcce--------------EEEEcC-CCCEEEEecCcccEEEEEecccceeehhccc
Confidence 899999999999999888777776 689999 999999999 999999999987766544333
Q ss_pred cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccc
Q 005315 350 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 429 (702)
Q Consensus 350 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 429 (702)
.. +..++|+-++..+.. .++.+.|-++..|+.+++...+.++.....+.++|+|+|+|+++.+..
T Consensus 148 ~e-~ne~~w~~~nd~Ffl-------t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl------- 212 (313)
T KOG1407|consen 148 FE-VNEISWNNSNDLFFL-------TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL------- 212 (313)
T ss_pred ce-eeeeeecCCCCEEEE-------ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-------
Confidence 33 778899877776666 566667888888999999999999999999999999999999999877
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEE
Q 005315 430 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANAL 508 (702)
Q Consensus 430 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~ 508 (702)
+.||++.+--. ...++.+..+|..++||.+|++||+++.|. .|-|-++++|. .+..++ ..+.+.+
T Consensus 213 --vSLWD~~ELiC---~R~isRldwpVRTlSFS~dg~~lASaSEDh---~IDIA~vetGd------~~~eI~~~~~t~tV 278 (313)
T KOG1407|consen 213 --VSLWDVDELIC---ERCISRLDWPVRTLSFSHDGRMLASASEDH---FIDIAEVETGD------RVWEIPCEGPTFTV 278 (313)
T ss_pred --eeccChhHhhh---heeeccccCceEEEEeccCcceeeccCccc---eEEeEecccCC------eEEEeeccCCceeE
Confidence 78999876432 234455689999999999999999999998 78888887776 566665 4578999
Q ss_pred EEccCCCEEEEEeccCCC------ceEEEEECC
Q 005315 509 FWSPSGRFIVLAGLKGFN------GQLEFYNVD 535 (702)
Q Consensus 509 ~~spdg~~l~~~~~~~~d------g~v~i~d~~ 535 (702)
+|+|...+||.++....+ |.|++|-+.
T Consensus 279 AWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 279 AWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 999999999998865433 677777654
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1e-28 Score=254.47 Aligned_cols=266 Identities=13% Similarity=0.259 Sum_probs=217.5
Q ss_pred CcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005315 203 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 281 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd 281 (702)
...++|+.||+|+++||.|..+. |++|.+. .. .+..+.+.. + ...+=+.+.| ..+.+.|
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~-p~-kl~~lk~~~-----~---l~~~d~~sad----------~~~~~~D 437 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLT-PK-KLKKLKDAS-----D---LSNIDTESAD----------VDVDMLD 437 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecc-hh-hhccccchh-----h---hccccccccc----------hhhhhcc
Confidence 35689999999999999999888 9999988 33 333332211 1 1112233344 3355666
Q ss_pred ccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCC
Q 005315 282 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSP 360 (702)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp 360 (702)
-.++...+++.+|.+++. ..+|+| +.++|++++ |+++++|.+.+...+.....|..+|.++.|+|
T Consensus 438 ~~~~~~~~~L~GH~GPVy-------------g~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P 503 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSGPVY-------------GCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP 503 (707)
T ss_pred ccCCceeEEeecCCCcee-------------eeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC
Confidence 667777888999998873 579999 999999999 99999999999998888889999999999999
Q ss_pred CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecC
Q 005315 361 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 440 (702)
Q Consensus 361 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 440 (702)
-|-++|+ ++.|+++++|..+... + ++
T Consensus 504 ~GyYFat-----as~D~tArLWs~d~~~--P----------------------------------------lR------- 529 (707)
T KOG0263|consen 504 RGYYFAT-----ASHDQTARLWSTDHNK--P----------------------------------------LR------- 529 (707)
T ss_pred CceEEEe-----cCCCceeeeeecccCC--c----------------------------------------hh-------
Confidence 9999999 8899999887654200 0 11
Q ss_pred CcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEE
Q 005315 441 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIV 518 (702)
Q Consensus 441 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~ 518 (702)
.+.+|...|.|+.|+|++.|+++++.|. +|++||+.++. .++.+.+| +|.+++|||+|++|+
T Consensus 530 -------ifaghlsDV~cv~FHPNs~Y~aTGSsD~---tVRlWDv~~G~------~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 530 -------IFAGHLSDVDCVSFHPNSNYVATGSSDR---TVRLWDVSTGN------SVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred -------hhcccccccceEEECCcccccccCCCCc---eEEEEEcCCCc------EEEEecCCCCceEEEEEcCCCceEe
Confidence 1337889999999999999999999999 99999998776 45556555 899999999999999
Q ss_pred EEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 519 LAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 519 ~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+|+. ||.|.+||+.+++++.. .|.+.|.++.||.+|..||+++. |++|++||+.
T Consensus 594 Sg~e---d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~-----DnsV~lWD~~ 649 (707)
T KOG0263|consen 594 SGDE---DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA-----DNSVRLWDLT 649 (707)
T ss_pred eccc---CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCC-----CCeEEEEEch
Confidence 9998 99999999999888765 67789999999999999999999 9999999975
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.2e-26 Score=234.17 Aligned_cols=279 Identities=21% Similarity=0.368 Sum_probs=221.6
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~-~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~ 273 (702)
..+++|...|++++|+|+|++|++++.++ +.+|+.. +......+ .| ..+..+.|+|++++|++++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------- 72 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLKGHTGPVRDVAASADGTYLASGSSD--------- 72 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEee-CCCcEEEEecCCcceeEEEECCCCCEEEEEcCC---------
Confidence 45678999999999999999999999888 8899998 55544444 23 348899999999999999998
Q ss_pred ccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCC
Q 005315 274 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVEN 352 (702)
Q Consensus 274 ~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~ 352 (702)
+.|++|++.+++.+..+..+...+. ++.|++ +++++++++ ++.|.+|++.+++.......+...
T Consensus 73 -~~i~i~~~~~~~~~~~~~~~~~~i~-------------~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 73 -KTIRLWDLETGECVRTLTGHTSYVS-------------SVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred -CeEEEEEcCcccceEEEeccCCcEE-------------EEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999998888888887765543 789999 999999999 999999999977766555556667
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccE
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 432 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 432 (702)
+.++.|+|++.++++ ++.++.+. +|+....+.
T Consensus 138 i~~~~~~~~~~~l~~-----~~~~~~i~--i~d~~~~~~----------------------------------------- 169 (289)
T cd00200 138 VNSVAFSPDGTFVAS-----SSQDGTIK--LWDLRTGKC----------------------------------------- 169 (289)
T ss_pred EEEEEEcCcCCEEEE-----EcCCCcEE--EEEcccccc-----------------------------------------
Confidence 999999999888876 33344433 333221100
Q ss_pred EEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEE
Q 005315 433 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFW 510 (702)
Q Consensus 433 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~ 510 (702)
...+..|...+.+++|+|+++.+++++.++ .|++|++..+. .+..+. ...+.+++|
T Consensus 170 -------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~d~~~~~------~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 170 -------------VATLTGHTGEVNSVAFSPDGEKLLSSSSDG---TIKLWDLSTGK------CLGTLRGHENGVNSVAF 227 (289)
T ss_pred -------------ceeEecCccccceEEECCCcCEEEEecCCC---cEEEEECCCCc------eecchhhcCCceEEEEE
Confidence 011224567899999999999999998888 89999997543 444442 337899999
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
+|++.++++++. +|.|++|++.+++.+.. .+...+.+++|+|+|++|++++. |+.+++|+
T Consensus 228 ~~~~~~~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iw~ 289 (289)
T cd00200 228 SPDGYLLASGSE---DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA-----DGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcC---CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC-----CCeEEecC
Confidence 999999998886 89999999997766554 45578999999999999999999 99999995
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=3.6e-28 Score=231.23 Aligned_cols=274 Identities=17% Similarity=0.291 Sum_probs=219.0
Q ss_pred ccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecC-
Q 005315 166 LTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAH- 243 (702)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~- 243 (702)
...|.||..+..++.. -.-+||. .....+..++.|...|+++.||++|+++++|+.+| |++|+..-+...+..-+|
T Consensus 103 ~WtPeGRRLltgs~SG-EFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~ 180 (464)
T KOG0284|consen 103 RWTPEGRRLLTGSQSG-EFTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHA 180 (464)
T ss_pred EEcCCCceeEeecccc-cEEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhh
Confidence 3456788664443333 3349998 67777888899999999999999999999999999 889998733333333455
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
..|++++|||+...+++++.| ++|+|||....+..+.+.+|.-.+. ++.|.| ....
T Consensus 181 eaIRdlafSpnDskF~t~SdD----------g~ikiWdf~~~kee~vL~GHgwdVk-------------svdWHP-~kgL 236 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDD----------GTIKIWDFRMPKEERVLRGHGWDVK-------------SVDWHP-TKGL 236 (464)
T ss_pred hhhheeccCCCCceeEEecCC----------CeEEEEeccCCchhheeccCCCCcc-------------eeccCC-ccce
Confidence 469999999999999999999 9999999999988888999987764 899999 9999
Q ss_pred EEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccccc
Q 005315 324 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 402 (702)
Q Consensus 324 la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 402 (702)
||+++ |+.|++||..++.++.....|...|..+.|+|++++|++ +|.|..+++ +|+...+.+.....+....
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt-----~skD~~~kv--~DiR~mkEl~~~r~Hkkdv 309 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLT-----GSKDQSCKV--FDIRTMKELFTYRGHKKDV 309 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEE-----ccCCceEEE--EehhHhHHHHHhhcchhhh
Confidence 99999 999999999999999888888889999999999999999 888887665 4554555555555566667
Q ss_pred ceeEEccCCCE-EEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEE
Q 005315 403 CKMYWQSSGDY-LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 481 (702)
Q Consensus 403 ~~~~~s~~g~~-l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 481 (702)
..+.|+|-..- |.++..++. +..|.+.. ..|+..+.. +|...|.+++|+|-|..||+++.|. +++
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgs---------vvh~~v~~-~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~---t~r 375 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGS---------VVHWVVGL-EEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDR---TVR 375 (464)
T ss_pred eeeccccccccceeeccCCCc---------eEEEeccc-cccccCCCc-ccccceeeeeccccceeEeecCCCc---cee
Confidence 77899997654 444555655 66676652 122222223 8999999999999999999999998 999
Q ss_pred EEEee
Q 005315 482 FYSMR 486 (702)
Q Consensus 482 i~d~~ 486 (702)
+|.-.
T Consensus 376 fw~r~ 380 (464)
T KOG0284|consen 376 FWTRN 380 (464)
T ss_pred eeccC
Confidence 99863
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=246.74 Aligned_cols=280 Identities=16% Similarity=0.306 Sum_probs=225.6
Q ss_pred CCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc--eeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005315 202 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 276 (702)
Q Consensus 202 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~ 276 (702)
|.+.+.|+.|||+|++|++++.++ +++|+.. ... .+..+ +...|.+++|||+|++|++++.| .+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~-~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D----------~t 226 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLE-GIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD----------KT 226 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecc-cccchhhccccccccceeeeEECCCCcEEEEecCC----------ce
Confidence 478999999999999999999998 7899996 444 44443 44469999999999999999999 99
Q ss_pred EEEEEc-cCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCee
Q 005315 277 INIFDV-RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVM 354 (702)
Q Consensus 277 i~vwd~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~ 354 (702)
|+|||+ ..+..++++.+|...+. ++.|+| +++++++++ |++|+||++.+++++.....|..+|.
T Consensus 227 iriwd~~~~~~~~~~l~gH~~~v~-------------~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 227 LRIWDLKDDGRNLKTLKGHSTYVT-------------SVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEeeccCCCeEEEEecCCCCceE-------------EEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999 56689999999988874 899999 999999999 99999999999999999999999999
Q ss_pred EEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEE
Q 005315 355 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 434 (702)
Q Consensus 355 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 434 (702)
.++|++++++|++ ++.|+.++||... +.... +.
T Consensus 293 ~~~f~~d~~~l~s-----~s~d~~i~vwd~~--~~~~~----------------------~~------------------ 325 (456)
T KOG0266|consen 293 GLAFSPDGNLLVS-----ASYDGTIRVWDLE--TGSKL----------------------CL------------------ 325 (456)
T ss_pred EEEECCCCCEEEE-----cCCCccEEEEECC--CCcee----------------------ee------------------
Confidence 9999999999998 6666666655432 21100 00
Q ss_pred EEEecCCcceeEEEecCCC-C-ceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC-----ceeE
Q 005315 435 FRIKERDIPIEVLELDNKN-D-KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-----QANA 507 (702)
Q Consensus 435 ~~l~~~~~~~~~~~l~~h~-~-~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-----~v~~ 507 (702)
..+.++. . ++++++|+|++.++++++.|+ .+++|++..+. .+..+.++ .+.+
T Consensus 326 ------------~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~---~~~~w~l~~~~------~~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 326 ------------KLLSGAENSAPVTSVQFSPNGKYLLSASLDR---TLKLWDLRSGK------SVGTYTGHSNLVRCIFS 384 (456)
T ss_pred ------------ecccCCCCCCceeEEEECCCCcEEEEecCCC---eEEEEEccCCc------ceeeecccCCcceeEec
Confidence 0011111 1 689999999999999999999 99999997654 33333333 2334
Q ss_pred EEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cc-cCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 508 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 508 ~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~-~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
...++.|+++++++. |+.|++|++.++..+.. .| ...+..+.|+|...++++++. ..|+.+++|...
T Consensus 385 ~~~~~~~~~i~sg~~---d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~---~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSE---DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSF---EGDGLIRLWKYD 454 (456)
T ss_pred ccccCCCCeEEEEeC---CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCc---CCCceEEEecCC
Confidence 556889999999998 99999999998766654 55 577889999999999999984 128999999764
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=1.5e-25 Score=256.94 Aligned_cols=284 Identities=9% Similarity=0.169 Sum_probs=211.8
Q ss_pred ccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCc----c----eeeee-cCCCeeEEEecCC-CCEEEEEcCCCCC
Q 005315 199 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF----N----RLMRY-AHPQVKLIDFSPG-EKYLVTYSSHEPS 267 (702)
Q Consensus 199 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~----~----~~~~~-~~~~v~~i~fSpd-g~~l~t~s~d~~~ 267 (702)
+..|...|++++|+|+|++||+++.++ |+||+.. .. . ....+ ++..+.+++|+|. +.+|++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~D--- 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECE-SIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE--- 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-cccccccccccceEEecccCceeeEEeccCCCCEEEEEeCC---
Confidence 345889999999999999999999999 8899975 21 0 12222 3446899999874 7899999999
Q ss_pred CCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccce
Q 005315 268 NPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK 346 (702)
Q Consensus 268 ~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~ 346 (702)
++|+|||+.+++.+..+.+|...+. +++|+|.++.+|++++ |+.|++||+.++..+...
T Consensus 555 -------g~v~lWd~~~~~~~~~~~~H~~~V~-------------~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 555 -------GVVQVWDVARSQLVTEMKEHEKRVW-------------SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred -------CeEEEEECCCCeEEEEecCCCCCEE-------------EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 9999999999999999999987763 7899852678999999 999999999877655433
Q ss_pred eeccCCeeEEEeC-CCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccc
Q 005315 347 SLKVENVMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 425 (702)
Q Consensus 347 ~~~~~~v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 425 (702)
.. ...+.++.|+ +++.+|++ ++.++.++
T Consensus 615 ~~-~~~v~~v~~~~~~g~~lat-----gs~dg~I~--------------------------------------------- 643 (793)
T PLN00181 615 KT-KANICCVQFPSESGRSLAF-----GSADHKVY--------------------------------------------- 643 (793)
T ss_pred ec-CCCeEEEEEeCCCCCEEEE-----EeCCCeEE---------------------------------------------
Confidence 22 2346666663 34666666 44444433
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--
Q 005315 426 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 503 (702)
Q Consensus 426 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 503 (702)
+|+++....+. ..+.+|...|.++.|. ++.+|++++.|+ .|++||+...........+..+.+|
T Consensus 644 --------iwD~~~~~~~~--~~~~~h~~~V~~v~f~-~~~~lvs~s~D~---~ikiWd~~~~~~~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 644 --------YYDLRNPKLPL--CTMIGHSKTVSYVRFV-DSSTLVSSSTDN---TLKLWDLSMSISGINETPLHSFMGHTN 709 (793)
T ss_pred --------EEECCCCCccc--eEecCCCCCEEEEEEe-CCCEEEEEECCC---EEEEEeCCCCccccCCcceEEEcCCCC
Confidence 33333211111 2344788899999997 788999999999 9999999753211122356666655
Q ss_pred ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee---------------ecccCceeeeEECCCCCEEEEEEeecc
Q 005315 504 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA---------------TAEHFMATDVEWDPTGRYVATAVTSVH 568 (702)
Q Consensus 504 ~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~---------------~~~~~~i~~~~~spdg~~l~t~s~~~~ 568 (702)
.++.++|+|+|.+|++++. |+.|.+|+......+. ..+...|.+++|+|+|..|++++.
T Consensus 710 ~i~~v~~s~~~~~lasgs~---D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~--- 783 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSE---TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANS--- 783 (793)
T ss_pred CeeEEEEcCCCCEEEEEeC---CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecC---
Confidence 5788999999999999998 9999999976443221 112245899999999999999999
Q ss_pred cccccEEEEEe
Q 005315 569 EMENGFNIWSF 579 (702)
Q Consensus 569 ~~d~~v~iw~~ 579 (702)
+|.|+||++
T Consensus 784 --dG~I~i~~~ 792 (793)
T PLN00181 784 --TGNIKILEM 792 (793)
T ss_pred --CCcEEEEec
Confidence 999999985
No 37
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.95 E-value=1.1e-26 Score=216.42 Aligned_cols=190 Identities=48% Similarity=0.895 Sum_probs=166.7
Q ss_pred eecccccceeEEccCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcC
Q 005315 396 NLFSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 474 (702)
Q Consensus 396 ~~~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 474 (702)
+++++..+.+.|+++|.+|++.+. +..++++++|+...||.++..+.+...+.+.. .++|.+++|+|+|+.||++.+.
T Consensus 2 ~~f~~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 2 NFFNVDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-EGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred CccccceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-CCceEEEEECcCCCEEEEEEcc
Confidence 567888999999999999999888 55688899999999999999988888888733 4579999999999999998875
Q ss_pred CCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEEC
Q 005315 475 SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWD 554 (702)
Q Consensus 475 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~s 554 (702)
.+. .|.|||++ ...+..+....++.+.|||+|++|++++.++..|.|.|||+++.+.+.+.++..++.++||
T Consensus 81 ~~~-~v~lyd~~-------~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~Ws 152 (194)
T PF08662_consen 81 MPA-KVTLYDVK-------GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWS 152 (194)
T ss_pred CCc-ccEEEcCc-------ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEc
Confidence 443 89999995 2377788888899999999999999999877779999999999999999888899999999
Q ss_pred CCCCEEEEEEee-cccccccEEEEEeccceeeeeccccEee
Q 005315 555 PTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQ 594 (702)
Q Consensus 555 pdg~~l~t~s~~-~~~~d~~v~iw~~~g~~l~~~~~~~i~~ 594 (702)
|||++|++++.. ++++|++++||++.|+++.+...+++++
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l~~ 193 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPFDELYQ 193 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEecCeEeEecchhhhhC
Confidence 999999999987 7788999999999999998887666554
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=5.5e-26 Score=213.67 Aligned_cols=312 Identities=13% Similarity=0.188 Sum_probs=237.4
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
|...|.+++.+|+.+.++||+.| ..-.||++.+|..+..+.+|+..++ ++.||. ||
T Consensus 63 H~~svFavsl~P~~~l~aTGGgD----------D~AflW~~~~ge~~~eltgHKDSVt-------------~~~Fsh-dg 118 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGD----------DLAFLWDISTGEFAGELTGHKDSVT-------------CCSFSH-DG 118 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCC----------ceEEEEEccCCcceeEecCCCCceE-------------EEEEcc-Cc
Confidence 34459999999999999999999 7889999999999999999999986 899999 99
Q ss_pred cEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc
Q 005315 322 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 400 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 400 (702)
.|||++. +|.|.||...++............+.=+.|+|.+.+|+. +...+.+|.|.+++.........++.
T Consensus 119 tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illA-------G~~DGsvWmw~ip~~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 119 TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLA-------GSTDGSVWMWQIPSQALCKVMSGHNS 191 (399)
T ss_pred eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEe-------ecCCCcEEEEECCCcceeeEecCCCC
Confidence 9999999 999999999998877665556667888999999999998 45556799999998754443333333
Q ss_pred ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeE
Q 005315 401 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 480 (702)
Q Consensus 401 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 480 (702)
....=.+.|+|+.++++..+++ +.+|+.... .|...+.- .......++.++..+..+..++.++ .+
T Consensus 192 ~ct~G~f~pdGKr~~tgy~dgt---------i~~Wn~ktg-~p~~~~~~-~e~~~~~~~~~~~~~~~~~~g~~e~---~~ 257 (399)
T KOG0296|consen 192 PCTCGEFIPDGKRILTGYDDGT---------IIVWNPKTG-QPLHKITQ-AEGLELPCISLNLAGSTLTKGNSEG---VA 257 (399)
T ss_pred CcccccccCCCceEEEEecCce---------EEEEecCCC-ceeEEecc-cccCcCCccccccccceeEeccCCc---cE
Confidence 3322368999999999999988 677776543 22222221 1134456677777888787777777 56
Q ss_pred EEEEeecccCcCceEEEEEcC----------CCc---eeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-cccC
Q 005315 481 SFYSMRTAQHAGRVSKLTTLK----------GKQ---ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHF 546 (702)
Q Consensus 481 ~i~d~~~~~~~~~~~~~~~~~----------~~~---v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~ 546 (702)
++-+..+++ .+.... .+. +-.+.||..=.+.|+++. ||+|.|||+...++... .|..
T Consensus 258 ~~~~~~sgK------Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v---dG~i~iyD~a~~~~R~~c~he~ 328 (399)
T KOG0296|consen 258 CGVNNGSGK------VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV---DGTIAIYDLAASTLRHICEHED 328 (399)
T ss_pred EEEccccce------EEEecCCCCccccccchhhhhhhhhcccccccchhhcccc---cceEEEEecccchhheeccCCC
Confidence 655543332 111111 122 344555555567777777 99999999998777665 4447
Q ss_pred ceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeee--ccccEeeEEEeeCCCCCCChhhHHHH
Q 005315 547 MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 547 ~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
.|+.+.|-+ ..+|++++. ++.|++||.. |+++... |...|.+++.+|+.+.++|.+.|.+.
T Consensus 329 ~V~~l~w~~-t~~l~t~c~-----~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 329 GVTKLKWLN-TDYLLTACA-----NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred ceEEEEEcC-cchheeecc-----CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence 899999999 789999999 9999999976 6666655 77899999999999999999987653
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.6e-26 Score=214.04 Aligned_cols=272 Identities=15% Similarity=0.273 Sum_probs=226.6
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 322 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~ 322 (702)
...|+.+-|+|+...+++++.| .+|++||..+|++.+.+++|...+. .++|+. .|+
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d----------~tikv~D~~tg~~e~~LrGHt~sv~-------------di~~~a-~Gk 163 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASED----------ATIKVFDTETGELERSLRGHTDSVF-------------DISFDA-SGK 163 (406)
T ss_pred ccceeeeeeccCceEEEEecCC----------ceEEEEEccchhhhhhhhcccccee-------------EEEEec-Ccc
Confidence 3359999999999999999999 9999999999999999999988763 789999 999
Q ss_pred EEEEec-CCeEEEEecCC-cccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc
Q 005315 323 YFAKLG-KNMISVYETES-FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 400 (702)
Q Consensus 323 ~la~~~-d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 400 (702)
++|+++ |-.+++||..+ .+.+.....|..+|.++.|-|.|.+|++ ++.|.+++.|.++..
T Consensus 164 ~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS-----~srD~tik~We~~tg------------- 225 (406)
T KOG0295|consen 164 YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILS-----CSRDNTIKAWECDTG------------- 225 (406)
T ss_pred EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeee-----cccccceeEEecccc-------------
Confidence 999999 77799999986 4455555567778999999999999998 888888776654320
Q ss_pred ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeE
Q 005315 401 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 480 (702)
Q Consensus 401 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 480 (702)
.....+++|...|..+..+.||..+|+++.|. +|
T Consensus 226 -------------------------------------------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq---tl 259 (406)
T KOG0295|consen 226 -------------------------------------------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ---TL 259 (406)
T ss_pred -------------------------------------------eeEEeccCchHhEEEEEecCCeeEEEecCCCc---eE
Confidence 11234668889999999999999999999999 99
Q ss_pred EEEEeecccCcCceEEEEEcCCCceeEEEEccC---------------CCEEEEEeccCCCceEEEEECCCcceeee--c
Q 005315 481 SFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS---------------GRFIVLAGLKGFNGQLEFYNVDELETMAT--A 543 (702)
Q Consensus 481 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spd---------------g~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~ 543 (702)
++|-+.++. |+.+...+.+++.+++|.|. |+++++++. |++|++||+.++.++.+ +
T Consensus 260 ~vW~~~t~~----~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr---DktIk~wdv~tg~cL~tL~g 332 (406)
T KOG0295|consen 260 RVWVVATKQ----CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR---DKTIKIWDVSTGMCLFTLVG 332 (406)
T ss_pred EEEEeccch----hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc---cceEEEEeccCCeEEEEEec
Confidence 999997653 33555556778999999763 358888887 99999999999999876 7
Q ss_pred ccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc-eeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 544 EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 544 ~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
|...|.+++|+|.|+||+++.. |+++++||++.. .+... |..-+.++.|+.+.++++||+-|..++
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaD-----Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~K 401 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCAD-----DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVK 401 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEec-----CCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceee
Confidence 7799999999999999999999 999999999854 44333 456688999999999999999876654
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-24 Score=223.19 Aligned_cols=267 Identities=13% Similarity=0.164 Sum_probs=212.7
Q ss_pred cccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-c
Q 005315 165 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-A 242 (702)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~ 242 (702)
.-++| .|.-++++-..+++-+|+. +-+..+..|..|.++|+.++|+|++.++++|+.|. |+||+.. +.+++.++ +
T Consensus 15 lsFHP-~rPwILtslHsG~IQlWDY-RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrclftL~G 91 (1202)
T KOG0292|consen 15 LSFHP-KRPWILTSLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCLFTLLG 91 (1202)
T ss_pred eecCC-CCCEEEEeecCceeeeehh-hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-cceehhhhcc
Confidence 33444 3444455556778889999 67788889999999999999999999999999998 8899999 88888877 4
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 243 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 243 ~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
|-+ |..+.|++.-.+|+++|.| .+|+||+..+++++..+.+|..-+. |.+|.| ..
T Consensus 92 HlDYVRt~~FHheyPWIlSASDD----------QTIrIWNwqsr~~iavltGHnHYVM-------------cAqFhp-tE 147 (1202)
T KOG0292|consen 92 HLDYVRTVFFHHEYPWILSASDD----------QTIRIWNWQSRKCIAVLTGHNHYVM-------------CAQFHP-TE 147 (1202)
T ss_pred ccceeEEeeccCCCceEEEccCC----------CeEEEEeccCCceEEEEecCceEEE-------------eeccCC-cc
Confidence 555 9999999999999999999 9999999999999999999998874 789999 99
Q ss_pred cEEEEec-CCeEEEEecCCccc---------------------c--------cceeeccCCeeEEEeCCCCCeEEEEeec
Q 005315 322 KYFAKLG-KNMISVYETESFTL---------------------I--------DKKSLKVENVMDFSWSPTDPIISLFVPE 371 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~---------------------~--------~~~~~~~~~v~~~~~sp~~~~la~~~~~ 371 (702)
..+++++ |.+|+|||+...+. . .....|..+|+-++|+|.-..|++
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS---- 223 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS---- 223 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe----
Confidence 9999999 99999999763211 0 011235567889999999999999
Q ss_pred CCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC
Q 005315 372 LGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN 451 (702)
Q Consensus 372 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 451 (702)
|+.|..+++|.|+...--++..-..+..+..++.|+|....+++.+.+++ +++|++.....- ..+..
T Consensus 224 -G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks---------irVwDm~kRt~v---~tfrr 290 (1202)
T KOG0292|consen 224 -GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS---------IRVWDMTKRTSV---QTFRR 290 (1202)
T ss_pred -cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc---------EEEEecccccce---eeeec
Confidence 89999999999876554444333334444555678999999999999888 899998865432 22322
Q ss_pred CCCceeEEEEeeCCcEEEEEEcCC
Q 005315 452 KNDKIIAFAWEPKGHRFAVIHGDS 475 (702)
Q Consensus 452 h~~~v~~~~~sp~g~~l~~~~~d~ 475 (702)
.++....++-+|..+.||.++..|
T Consensus 291 endRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecCCc
Confidence 367788888888888888877654
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=209.24 Aligned_cols=303 Identities=19% Similarity=0.269 Sum_probs=243.0
Q ss_pred EecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CC-CeeEEEecCCCCEEEEEc
Q 005315 186 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYS 262 (702)
Q Consensus 186 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~fSpdg~~l~t~s 262 (702)
-|.. .-+...++++|.+=|.||++.|-.+++|+|+.|+ |.|||+. ++++..++. |- .|..+++|+--.||++++
T Consensus 136 eWHa--pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla-tg~LkltltGhi~~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 136 EWHA--PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA-TGQLKLTLTGHIETVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred cccC--cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcc-cCeEEEeecchhheeeeeeecccCceEEEec
Confidence 3554 3556678899999999999999999999999999 7799999 888888774 44 499999999999999999
Q ss_pred CCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc
Q 005315 263 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 341 (702)
Q Consensus 263 ~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~ 341 (702)
.| +.|+.||+...+.++.+.+|...+. ++...| .-..|++++ |.+++|||+.+..
T Consensus 213 ed----------k~VKCwDLe~nkvIR~YhGHlS~V~-------------~L~lhP-Tldvl~t~grDst~RvWDiRtr~ 268 (460)
T KOG0285|consen 213 ED----------KQVKCWDLEYNKVIRHYHGHLSGVY-------------CLDLHP-TLDVLVTGGRDSTIRVWDIRTRA 268 (460)
T ss_pred CC----------CeeEEEechhhhhHHHhccccceeE-------------EEeccc-cceeEEecCCcceEEEeeecccc
Confidence 99 9999999999999999999988773 789999 899999999 9999999999988
Q ss_pred cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccc
Q 005315 342 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 421 (702)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 421 (702)
.+.....|...|..+.+.|.+..+++ ++.|.++++|.... |+.
T Consensus 269 ~V~~l~GH~~~V~~V~~~~~dpqvit-----~S~D~tvrlWDl~a------------------------gkt-------- 311 (460)
T KOG0285|consen 269 SVHVLSGHTNPVASVMCQPTDPQVIT-----GSHDSTVRLWDLRA------------------------GKT-------- 311 (460)
T ss_pred eEEEecCCCCcceeEEeecCCCceEE-----ecCCceEEEeeecc------------------------Cce--------
Confidence 88777788888999999988888887 77777666554321 111
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC
Q 005315 422 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 501 (702)
Q Consensus 422 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 501 (702)
...+..|+..|.+++.+|.-..||+++.|. ++-|++..+. .+..+.
T Consensus 312 ------------------------~~tlt~hkksvral~lhP~e~~fASas~dn----ik~w~~p~g~------f~~nls 357 (460)
T KOG0285|consen 312 ------------------------MITLTHHKKSVRALCLHPKENLFASASPDN----IKQWKLPEGE------FLQNLS 357 (460)
T ss_pred ------------------------eEeeecccceeeEEecCCchhhhhccCCcc----ceeccCCccc------hhhccc
Confidence 134557888999999999999999988765 8899996654 444455
Q ss_pred CC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeec----------ccCceeeeEECCCCCEEEEEEeeccc
Q 005315 502 GK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA----------EHFMATDVEWDPTGRYVATAVTSVHE 569 (702)
Q Consensus 502 ~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~----------~~~~i~~~~~spdg~~l~t~s~~~~~ 569 (702)
++ .+++++...|| ++++|+. +|.+.+||..++-..... ....|.+.+|+..|..|++|..
T Consensus 358 gh~~iintl~~nsD~-v~~~G~d---ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea---- 429 (460)
T KOG0285|consen 358 GHNAIINTLSVNSDG-VLVSGGD---NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA---- 429 (460)
T ss_pred cccceeeeeeeccCc-eEEEcCC---ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccC----
Confidence 55 57888888887 6667776 899999999865443321 2256889999999999999999
Q ss_pred ccccEEEEEeccceeeeeccccEeeEEEeeC
Q 005315 570 MENGFNIWSFNGKLLYRTLKDHFFQFLWRPR 600 (702)
Q Consensus 570 ~d~~v~iw~~~g~~l~~~~~~~i~~~~w~p~ 600 (702)
|.+|++|.-+.......|. +.|.|.
T Consensus 430 -dKtIk~~keDe~aT~EthP-----l~w~P~ 454 (460)
T KOG0285|consen 430 -DKTIKMYKEDEHATEETHP-----LNWKPE 454 (460)
T ss_pred -CcceEEEecccccCcccCC-----cCCCCc
Confidence 9999999765332222221 567765
No 42
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.6e-26 Score=215.50 Aligned_cols=273 Identities=16% Similarity=0.313 Sum_probs=208.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---EEeeccCCCcccccCCCCCCCCcccceEEEcC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 318 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~ 318 (702)
|...|..+.||++|+|||+++.| .+..||.+.... ..+++.+|..++. .+.|||
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD----------~Taiiw~v~~d~~~kl~~tlvgh~~~V~-------------yi~wSP 279 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKD----------STAIIWIVVYDVHFKLKKTLVGHSQPVS-------------YIMWSP 279 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCC----------ceEEEEEEecCcceeeeeeeecccCceE-------------EEEECC
Confidence 34459999999999999999999 899999885443 4778888888775 789999
Q ss_pred CCCcEEEEec-CCeEEEEecCCcccccceeec-cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeee
Q 005315 319 GKDKYFAKLG-KNMISVYETESFTLIDKKSLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 396 (702)
Q Consensus 319 ~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 396 (702)
|++|+++++ +..+.+||+.++.+....... .-.+.+.+|.|||..+++ |+.+..+.
T Consensus 280 -DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~-----Gs~dr~i~---------------- 337 (519)
T KOG0293|consen 280 -DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT-----GSPDRTII---------------- 337 (519)
T ss_pred -CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe-----cCCCCcEE----------------
Confidence 999999999 888999999999877654322 345889999999999888 66664433
Q ss_pred ecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC
Q 005315 397 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 476 (702)
Q Consensus 397 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 476 (702)
.|.-||+.+- -|.- . ....|.+++.++||+++++...|.
T Consensus 338 ---------~wdlDgn~~~------------------~W~g----v---------r~~~v~dlait~Dgk~vl~v~~d~- 376 (519)
T KOG0293|consen 338 ---------MWDLDGNILG------------------NWEG----V---------RDPKVHDLAITYDGKYVLLVTVDK- 376 (519)
T ss_pred ---------EecCCcchhh------------------cccc----c---------ccceeEEEEEcCCCcEEEEEeccc-
Confidence 3455554421 1110 0 024588899999999999999888
Q ss_pred CCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--ccc--CceeeeE
Q 005315 477 RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEH--FMATDVE 552 (702)
Q Consensus 477 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~--~~i~~~~ 552 (702)
.+++|+..+.... .+ .-..+++++++.|.+|+++++.-. +..+.+||+...+++.. +|. ..+..-+
T Consensus 377 --~i~l~~~e~~~dr----~l-ise~~~its~~iS~d~k~~LvnL~---~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 377 --KIRLYNREARVDR----GL-ISEEQPITSFSISKDGKLALVNLQ---DQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred --ceeeechhhhhhh----cc-ccccCceeEEEEcCCCcEEEEEcc---cCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 8999998754321 11 112568999999999999988877 89999999997666553 222 2333445
Q ss_pred ECC-CCCEEEEEEeecccccccEEEEEec-cceeeee--ccccEeeEEEeeCCC-CCCChhhHHHHHH
Q 005315 553 WDP-TGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPP-SFLTPEKEEEIAK 615 (702)
Q Consensus 553 ~sp-dg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~--~~~~i~~~~w~p~~~-~l~s~~~d~~i~~ 615 (702)
|-- +..++|+||. |+.|+||+.. |+++... |...+.+++|.|..+ .++|+++|++||.
T Consensus 447 Fgg~~~~fiaSGSE-----D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 447 FGGGNDKFIASGSE-----DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred cCCCCcceEEecCC-----CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 543 4579999999 9999999965 7777665 668899999999754 7889999999984
No 43
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.7e-23 Score=204.53 Aligned_cols=398 Identities=13% Similarity=0.193 Sum_probs=276.4
Q ss_pred ccccCCCCCce----E------EEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCC---------
Q 005315 164 KWLTDEKARDQ----F------VIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ--------- 224 (702)
Q Consensus 164 ~~~~~~~~~~~----~------~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~--------- 224 (702)
.|.+..+|++. + ++..--.+.+++|. .....+.+.+|+..|.|++.+||--.+|+|-..
T Consensus 57 ewvygYRG~dcR~Nly~lptgE~vyfvA~V~Vl~n~--ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~p 134 (626)
T KOG2106|consen 57 EWVYGYRGVDCRNNLYLLPTGELVYFVAAVGVLYNW--EERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQP 134 (626)
T ss_pred EEEEeecceeeeceeEEccCccEEEEeccEEEEEee--hhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCC
Confidence 56666666553 2 22333456667776 234456788999999999999998888875422
Q ss_pred ceEEeecCcCcceeeee--cCCCeeEEEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCccccc
Q 005315 225 GAAVWGGANTFNRLMRY--AHPQVKLIDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 300 (702)
Q Consensus 225 ~i~iw~~~~~~~~~~~~--~~~~v~~i~fSpd--g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~ 300 (702)
.+++||.. +...+..+ .+++|.|++||+- |.+|+..... +...+.|||...+..+...+.....+.
T Consensus 135 hvriWdsv-~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s--------~~h~lSVWdWqk~~~~~~vk~sne~v~- 204 (626)
T KOG2106|consen 135 HVRIWDSV-TLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS--------NPHMLSVWDWQKKAKLGPVKTSNEVVF- 204 (626)
T ss_pred eeeecccc-cceeeeeeccccccceeeeecccCCCceEEEecCC--------CccccchhhchhhhccCcceeccceEE-
Confidence 27899977 66655555 4667999999984 5666655433 226789999988777666655444432
Q ss_pred CCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeec----cCCeeEEEeCCCCCeEEEEeecCCCCC
Q 005315 301 GGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLK----VENVMDFSWSPTDPIISLFVPELGGGN 376 (702)
Q Consensus 301 ~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~~~~~~ 376 (702)
...|.|.+.+.+++++.+.+.+|+...+.+..+.-+- ..-|.+++|.++|..+. +|
T Consensus 205 ------------~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT--------gD 264 (626)
T KOG2106|consen 205 ------------LATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT--------GD 264 (626)
T ss_pred ------------EEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe--------ec
Confidence 5789995567888888999999998877665433211 13499999999998776 66
Q ss_pred CCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccc-------------ccccEE--------EE
Q 005315 377 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS-------------TYTGFE--------LF 435 (702)
Q Consensus 377 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~-------------~~~~~~--------l~ 435 (702)
..+.|.+|+....+..++...+......+.--.+|..|- +..|.....|. .++.++ ++
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 667777887766665555556666666666666776554 44333211111 001110 00
Q ss_pred -------EEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEE
Q 005315 436 -------RIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANAL 508 (702)
Q Consensus 436 -------~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 508 (702)
.+...-...-.+...+|.+....++.+|+...|++++.|+ .+++|+- .+ . ....+-..++.++
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk---~v~lW~~--~k--~---~wt~~~~d~~~~~ 413 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK---HVRLWND--HK--L---EWTKIIEDPAECA 413 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc---eEEEccC--Cc--e---eEEEEecCceeEe
Confidence 0000000011233447888899999999999999999999 9999992 11 0 2223335688999
Q ss_pred EEccCCCEEEEEeccCCCceEEEEECCCcceeee-cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec--cceee
Q 005315 509 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN--GKLLY 585 (702)
Q Consensus 509 ~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~--g~~l~ 585 (702)
.|+|.| .+++++. .|...+.|.++..++.. ....+++.+.|+|+|.+||.++. |+.|+||.++ |+...
T Consensus 414 ~fhpsg-~va~Gt~---~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~-----d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTA---TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH-----DNHIYIYRVSANGRKYS 484 (626)
T ss_pred eccCcc-eEEEeec---cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC-----CCeEEEEEECCCCcEEE
Confidence 999999 8888888 89999999998655543 33688999999999999999999 9999999886 55443
Q ss_pred e---eccccEeeEEEeeCCCCCCChhhHHHH
Q 005315 586 R---TLKDHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 586 ~---~~~~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
. .+...|+++.|++|++++.+.+-|-.|
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ei 515 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEI 515 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccCceEE
Confidence 3 345899999999999999988766544
No 44
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=200.52 Aligned_cols=303 Identities=15% Similarity=0.179 Sum_probs=204.2
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcce-eeee-----cCCCeeEEEecCCCCEEEEEcCCCCCCC
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR-LMRY-----AHPQVKLIDFSPGEKYLVTYSSHEPSNP 269 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~-~~~~-----~~~~v~~i~fSpdg~~l~t~s~d~~~~~ 269 (702)
..+++|...|++++||.||++|||++.|+ |+||++. .+.. .+++ .....+.+.|+||-+-++.+...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~-DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~----- 153 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVR-DFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR----- 153 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecc-hhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc-----
Confidence 45789999999999999999999999999 8899998 5542 1111 22347889999998766655443
Q ss_pred cCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceee
Q 005315 270 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 348 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~ 348 (702)
..++++|.+...+. -.+..|....---+-.....+..-.+-... +++||++++ |..|.+|++. |+++.....
T Consensus 154 ----g~~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idt 226 (420)
T KOG2096|consen 154 ----GNKLCVYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDT 226 (420)
T ss_pred ----CCEEEEEEeeeccc-CCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence 05799998632211 111111000000000000000000344455 789999999 9999999999 777755544
Q ss_pred ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccc
Q 005315 349 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 428 (702)
Q Consensus 349 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 428 (702)
....-...+.||+|++|++ ++-.-.++||-. .|..+|.+--
T Consensus 227 nq~~n~~aavSP~GRFia~-----~gFTpDVkVwE~---------------------~f~kdG~fqe------------- 267 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGRFIAV-----SGFTPDVKVWEP---------------------IFTKDGTFQE------------- 267 (420)
T ss_pred ccccccceeeCCCCcEEEE-----ecCCCCceEEEE---------------------EeccCcchhh-------------
Confidence 4555677899999999998 555555555432 3455554310
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeeccc-CcCceEEEEEcC------
Q 005315 429 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ-HAGRVSKLTTLK------ 501 (702)
Q Consensus 429 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~-~~~~~~~~~~~~------ 501 (702)
....++|.+|...|..++|||++.++++.+.|| .++|||.+-.- .....+.+++.+
T Consensus 268 --------------v~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa 330 (420)
T KOG2096|consen 268 --------------VKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---KWRIWDTDVRYEAGQDPKILKEGSAPLHAA 330 (420)
T ss_pred --------------hhhhheeccchhheeeeeeCCCcceeEEEecCC---cEEEeeccceEecCCCchHhhcCCcchhhc
Confidence 112355779999999999999999999999999 99999985210 000111222221
Q ss_pred CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee---cccCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 502 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 502 ~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~---~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
+..-..+..||.|+.|+++. ...|.+|..++++.... .|...|++++|+++|+|+++++. ..++++.
T Consensus 331 g~~p~RL~lsP~g~~lA~s~----gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd------r~vrv~~ 400 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVSF----GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD------RYVRVIR 400 (420)
T ss_pred CCCceEEEeCCCCcEEEeec----CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc------eeeeeec
Confidence 11223799999999999886 57899999998776654 67789999999999999999987 5666654
No 45
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.3e-25 Score=236.50 Aligned_cols=288 Identities=17% Similarity=0.305 Sum_probs=214.6
Q ss_pred CCCcccceEEECCCCcEEEEEe--CCc-eEEeecCcCc-----------ceeeee-cCC-CeeEEEecCCCCEEEEEcCC
Q 005315 201 RSYWTESFVQWSPLGTYLATVH--RQG-AAVWGGANTF-----------NRLMRY-AHP-QVKLIDFSPGEKYLVTYSSH 264 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~--~~~-i~iw~~~~~~-----------~~~~~~-~~~-~v~~i~fSpdg~~l~t~s~d 264 (702)
++...+.++..+|||..+|||+ .|+ ++||+.+.-. +.+++. .|. .|.|+.|||||+|||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4456689999999999999999 666 7799765111 112222 244 49999999999999999999
Q ss_pred CCCCCcCCCccEEEEEEccC------------------CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEE
Q 005315 265 EPSNPRDANRVVINIFDVRT------------------GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 326 (702)
Q Consensus 265 ~~~~~~~~~~~~i~vwd~~~------------------g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~ 326 (702)
+.|.||.... .+....+.+|...+. .+.|+| ++.+||+
T Consensus 91 ----------~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-------------Dv~Wsp-~~~~lvS 146 (942)
T KOG0973|consen 91 ----------RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-------------DVNWSP-DDSLLVS 146 (942)
T ss_pred ----------ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-------------eeccCC-CccEEEE
Confidence 8999999752 125667788877764 789999 9999999
Q ss_pred ec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccccccee
Q 005315 327 LG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKM 405 (702)
Q Consensus 327 ~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 405 (702)
++ |++|.||+..++..+.....|...|..+.|.|-|+++|+ -+.|.+++||...- .......+
T Consensus 147 ~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~AS-----qsdDrtikvwrt~d--w~i~k~It--------- 210 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFAS-----QSDDRTLKVWRTSD--WGIEKSIT--------- 210 (942)
T ss_pred ecccceEEEEccccceeeeeeecccccccceEECCccCeeee-----ecCCceEEEEEccc--ceeeEeec---------
Confidence 99 999999999999888888889999999999999999999 67888888776221 10000000
Q ss_pred EEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEE
Q 005315 406 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYS 484 (702)
Q Consensus 406 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d 484 (702)
.|.....+ ......++|||||++|++... .++.+.+.|.+
T Consensus 211 ------------------------------------~pf~~~~~---~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 211 ------------------------------------KPFEESPL---TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ------------------------------------cchhhCCC---cceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 00000001 344567899999999998876 56666888877
Q ss_pred eecccCcCceEEEEEcCCC--ceeEEEEccC--------C-------C--EEEEEeccCCCceEEEEECCCcceeeeccc
Q 005315 485 MRTAQHAGRVSKLTTLKGK--QANALFWSPS--------G-------R--FIVLAGLKGFNGQLEFYNVDELETMATAEH 545 (702)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~--~v~~~~~spd--------g-------~--~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~ 545 (702)
-.+- +.-..+-+| ++.++.|+|. | . .+|+|+. |+.|.||.....+.+...|+
T Consensus 252 R~tW------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq---DrSlSVW~T~~~RPl~vi~~ 322 (942)
T KOG0973|consen 252 RGTW------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ---DRSLSVWNTALPRPLFVIHN 322 (942)
T ss_pred cCCc------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC---CccEEEEecCCCCchhhhhh
Confidence 6332 233334344 7889999882 1 1 3445555 99999999987777765444
Q ss_pred ---CceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 546 ---FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 546 ---~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
..|.+++|+|||..|+.+|. ||+|.+..|..
T Consensus 323 lf~~SI~DmsWspdG~~LfacS~-----DGtV~~i~Fee 356 (942)
T KOG0973|consen 323 LFNKSIVDMSWSPDGFSLFACSL-----DGTVALIHFEE 356 (942)
T ss_pred hhcCceeeeeEcCCCCeEEEEec-----CCeEEEEEcch
Confidence 78999999999999999999 99999999973
No 46
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=3.8e-24 Score=221.08 Aligned_cols=390 Identities=13% Similarity=0.177 Sum_probs=281.9
Q ss_pred ccccCCCCCc-eEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee
Q 005315 164 KWLTDEKARD-QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY 241 (702)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~ 241 (702)
.-+.+|...- .++++...+...+||. ++++.+..++++...|+++.=||-=..+|.|..+| |.|+++. ..+.+.+|
T Consensus 163 tal~HP~TYLNKIvvGs~~G~lql~Nv-rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK-~dkil~sF 240 (910)
T KOG1539|consen 163 TALLHPSTYLNKIVVGSSQGRLQLWNV-RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK-FDKILMSF 240 (910)
T ss_pred eeEecchhheeeEEEeecCCcEEEEEe-ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc-cCcEEEEE
Confidence 3455565443 3455567777779999 78999999999999999999999999999999999 8899999 99999999
Q ss_pred cCC--CeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCcEEeecc-CCCcccccCCCCCCCCcccceEEEc
Q 005315 242 AHP--QVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWG 317 (702)
Q Consensus 242 ~~~--~v~~i~fSpdg~~l-~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~s 317 (702)
.++ .|++++|..||..+ |+++.. |.+.+||+...+.+..+. .|.+.+. ...|-
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~----------G~m~~wDLe~kkl~~v~~nah~~sv~-------------~~~fl 297 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSN----------GDMAFWDLEKKKLINVTRNAHYGSVT-------------GATFL 297 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCC----------ceEEEEEcCCCeeeeeeeccccCCcc-------------cceec
Confidence 886 49999999999765 555555 899999998777766655 4433331 35677
Q ss_pred CCCCcEEEEec-CCeEEEEecCCc----ccccceeeccCCeeEEEeC-CCCCeEEEEeecCCCCCCCcE-----------
Q 005315 318 GGKDKYFAKLG-KNMISVYETESF----TLIDKKSLKVENVMDFSWS-PTDPIISLFVPELGGGNQPAR----------- 380 (702)
Q Consensus 318 ~~dg~~la~~~-d~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~s-p~~~~la~~~~~~~~~~~~~~----------- 380 (702)
| ....+++.+ |+.+++|-.+++ ++++....|..+..++.|. .+|.++.. ++.|.+.+
T Consensus 298 ~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils-----a~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 298 P-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS-----AKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred C-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe-----cccCcchhhhhhhHHHHhH
Confidence 7 777888887 888887765533 3444445566665566554 33444443 22222211
Q ss_pred ----------------------------------------------------EEEEecCCcc----eeeeeee--ccccc
Q 005315 381 ----------------------------------------------------VSLVQIPSKE----ELRQKNL--FSVSD 402 (702)
Q Consensus 381 ----------------------------------------------------i~~~~~~~~~----~~~~~~~--~~~~~ 402 (702)
.+.|+..... .+....+ .....
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~ 451 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA 451 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence 1111111110 0000000 11233
Q ss_pred ceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEE
Q 005315 403 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 482 (702)
Q Consensus 403 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 482 (702)
..++.++.|++.+.+...+. +.+|+++..-.....-.-+.|.++|+.++...-++.+++++.+| .+.+
T Consensus 452 ~av~vs~CGNF~~IG~S~G~---------Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G---ilkf 519 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGT---------IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG---ILKF 519 (910)
T ss_pred EEEEEeccCceEEEeccCCe---------EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc---eEEE
Confidence 34456677777777766655 78888875322211112358999999999998888999999999 9999
Q ss_pred EEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCE
Q 005315 483 YSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRY 559 (702)
Q Consensus 483 ~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~ 559 (702)
|+...+. ++.++. ++.+..+..+-....++++.. +-.|.++|..+.+++.. +|...|++++|||||++
T Consensus 520 w~f~~k~------l~~~l~l~~~~~~iv~hr~s~l~a~~~d---df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 520 WDFKKKV------LKKSLRLGSSITGIVYHRVSDLLAIALD---DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred EecCCcc------eeeeeccCCCcceeeeeehhhhhhhhcC---ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 9996543 555555 557888888888888888887 88999999998887764 78899999999999999
Q ss_pred EEEEEeecccccccEEEEEec-cceeeeecc-ccEeeEEEeeCCCCCCChhhH
Q 005315 560 VATAVTSVHEMENGFNIWSFN-GKLLYRTLK-DHFFQFLWRPRPPSFLTPEKE 610 (702)
Q Consensus 560 l~t~s~~~~~~d~~v~iw~~~-g~~l~~~~~-~~i~~~~w~p~~~~l~s~~~d 610 (702)
|++++. |++|++||+- |.++..... .....+.++|+|.+|+|...+
T Consensus 591 lisasm-----D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 591 LISASM-----DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred EEEeec-----CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 999999 9999999986 556665544 678899999999999998765
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.3e-24 Score=193.99 Aligned_cols=282 Identities=16% Similarity=0.248 Sum_probs=224.0
Q ss_pred EEeeccCCCcccccCCCCCCCCcccceEEEcCCC-CcEEEEec-CCeEEEEecCCcccc-cce---eeccCCeeEEEeCC
Q 005315 287 VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFTLI-DKK---SLKVENVMDFSWSP 360 (702)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d-g~~la~~~-d~~i~v~d~~~~~~~-~~~---~~~~~~v~~~~~sp 360 (702)
.++.+++|.+.+ | .++|+| . |..||+++ |+.|+||+...+... -+. ..|...|++++|+|
T Consensus 6 ~~~~~~gh~~r~------------W-~~awhp-~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp 71 (312)
T KOG0645|consen 6 LEQKLSGHKDRV------------W-SVAWHP-GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP 71 (312)
T ss_pred eEEeecCCCCcE------------E-EEEecc-CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC
Confidence 356677777765 7 699999 7 88999999 999999998853221 111 13667799999999
Q ss_pred CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecC
Q 005315 361 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 440 (702)
Q Consensus 361 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 440 (702)
.|++||+ ++-|.+.-||.-.-...+.+.....+....-.++|+++|.+||+++.+.. +-+|.+.+.
T Consensus 72 ~g~~La~-----aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS---------VWiWe~ded 137 (312)
T KOG0645|consen 72 HGRYLAS-----ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS---------VWIWEIDED 137 (312)
T ss_pred CCcEEEE-----eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe---------EEEEEecCC
Confidence 9999999 88888888877666666677766666677777899999999999999977 788888865
Q ss_pred CcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEE
Q 005315 441 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIV 518 (702)
Q Consensus 441 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~ 518 (702)
+--...--|.+|...|..+.|+|.-..|++++.|. +|++|+-.. ...+..+.++.++ .+.+++|+|.|..|+
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn---TIk~~~~~~---dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN---TIKVYRDED---DDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCC---eEEEEeecC---CCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 54444445789999999999999999999999999 999999763 2345678888877 689999999999999
Q ss_pred EEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc-------eee---eec
Q 005315 519 LAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-------LLY---RTL 588 (702)
Q Consensus 519 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-------~l~---~~~ 588 (702)
+++. |++++||-.- ..+...|...+..+.|. ...||+++. |+.|++|.-... ++. ..|
T Consensus 212 s~sd---D~tv~Iw~~~--~~~~~~~sr~~Y~v~W~--~~~IaS~gg-----D~~i~lf~~s~~~d~p~~~l~~~~~~aH 279 (312)
T KOG0645|consen 212 SCSD---DGTVSIWRLY--TDLSGMHSRALYDVPWD--NGVIASGGG-----DDAIRLFKESDSPDEPSWNLLAKKEGAH 279 (312)
T ss_pred EecC---CcceEeeeec--cCcchhcccceEeeeec--ccceEeccC-----CCEEEEEEecCCCCCchHHHHHhhhccc
Confidence 9998 9999999855 22334566788899999 457899999 999999976531 122 236
Q ss_pred cccEeeEEEeeC-CCCCCChhhHHHHH
Q 005315 589 KDHFFQFLWRPR-PPSFLTPEKEEEIA 614 (702)
Q Consensus 589 ~~~i~~~~w~p~-~~~l~s~~~d~~i~ 614 (702)
...|.++.|.|. +..|+++++|+.++
T Consensus 280 e~dVNsV~w~p~~~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 280 EVDVNSVQWNPKVSNRLASGGDDGIVN 306 (312)
T ss_pred ccccceEEEcCCCCCceeecCCCceEE
Confidence 678999999995 67889999998775
No 48
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-24 Score=220.63 Aligned_cols=273 Identities=18% Similarity=0.334 Sum_probs=218.4
Q ss_pred ccceEEECCCCcEEEEEeCCceEEeecCcCcc--eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005315 205 TESFVQWSPLGTYLATVHRQGAAVWGGANTFN--RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 282 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~--~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~ 282 (702)
..+-+.|| ....||.+....|.+|+.. +.. .+..++...|+++.|+++|++|++|..+ |.|.|||+
T Consensus 179 Y~nlldWs-s~n~laValg~~vylW~~~-s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~----------g~v~iwD~ 246 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVALGQSVYLWSAS-SGSVTELCSFGEELVTSVKWSPDGSHLAVGTSD----------GTVQIWDV 246 (484)
T ss_pred hhhHhhcc-cCCeEEEEecceEEEEecC-CCceEEeEecCCCceEEEEECCCCCEEEEeecC----------CeEEEEeh
Confidence 45678899 5568999999999999988 555 3444454569999999999999999999 99999999
Q ss_pred cCCcEEeeccC-CCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccc-eeeccCCeeEEEeC
Q 005315 283 RTGKVMRDFKG-SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK-KSLKVENVMDFSWS 359 (702)
Q Consensus 283 ~~g~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s 359 (702)
.+.+.++.+.+ |...+. +++|+. ..+.+++ ++.|..+|+...+.... ...|...|..+.|+
T Consensus 247 ~~~k~~~~~~~~h~~rvg-------------~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 247 KEQKKTRTLRGSHASRVG-------------SLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred hhccccccccCCcCceeE-------------EEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 99999999998 655543 789964 6777787 99999999997765544 55677789999999
Q ss_pred CCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEec
Q 005315 360 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 439 (702)
Q Consensus 360 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 439 (702)
+++.++|. |+.|+.+.||... .
T Consensus 311 ~d~~~lAS-----GgnDN~~~Iwd~~--~--------------------------------------------------- 332 (484)
T KOG0305|consen 311 PDGNQLAS-----GGNDNVVFIWDGL--S--------------------------------------------------- 332 (484)
T ss_pred CCCCeecc-----CCCccceEeccCC--C---------------------------------------------------
Confidence 99999998 6666666554331 0
Q ss_pred CCcceeEEEecCCCCceeEEEEee-CCcEEEEEEc--CCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCC
Q 005315 440 RDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHG--DSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR 515 (702)
Q Consensus 440 ~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~--d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~ 515 (702)
+...+.+..|...|.+++|+| ....||+|++ |+ .|+||+..++. .+..+. +.+|.++.|++..+
T Consensus 333 ---~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~---~i~fwn~~~g~------~i~~vdtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 333 ---PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR---CIKFWNTNTGA------RIDSVDTGSQVCSLIWSKKYK 400 (484)
T ss_pred ---ccccEEEeccceeeeEeeeCCCccCceEEcCCCccc---EEEEEEcCCCc------EecccccCCceeeEEEcCCCC
Confidence 011234557899999999999 5667777766 45 99999997655 566555 55899999999998
Q ss_pred EEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 516 FIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 516 ~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
-|+++. |..++.|.||+..+.+.+.. +|...|..++|||||.+|++++. |.++++|++-+
T Consensus 401 Ei~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~-----DETlrfw~~f~ 462 (484)
T KOG0305|consen 401 ELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA-----DETLRFWNLFD 462 (484)
T ss_pred EEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc-----cCcEEeccccC
Confidence 777764 44478999999998777654 78889999999999999999999 99999999765
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-24 Score=224.50 Aligned_cols=309 Identities=15% Similarity=0.204 Sum_probs=244.1
Q ss_pred ccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005315 199 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRV 275 (702)
Q Consensus 199 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~ 275 (702)
|...+..|..++|+|.--++.++..+| |++||.. -+.++.+| .|.+ |..++|+|.+.++++|+.| .
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYR-M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDD----------y 73 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYR-MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDD----------Y 73 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhh-hhhHHhhhhccCCccceeeecCCCCeEEecCCc----------c
Confidence 445567788999999999999999999 7799999 88889898 4655 9999999999999999999 9
Q ss_pred EEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCee
Q 005315 276 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVM 354 (702)
Q Consensus 276 ~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~ 354 (702)
.|+||+..+.+++.++.+|.+-+. .+.|++ .--+|.+++ |.+|+||+..+.+++.....|..-|.
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVR-------------t~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVR-------------TVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred EEEEEecccceehhhhccccceeE-------------EeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 999999999999999999988774 678888 888999999 99999999999999999999999999
Q ss_pred EEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEE
Q 005315 355 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 434 (702)
Q Consensus 355 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 434 (702)
+..|+|....+++ ++-|++++||.+..-..+......+ .=...|..+. ..+
T Consensus 140 cAqFhptEDlIVS-----aSLDQTVRVWDisGLRkk~~~pg~~--------e~~~~~~~~~----------------~dL 190 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVS-----ASLDQTVRVWDISGLRKKNKAPGSL--------EDQMRGQQGN----------------SDL 190 (1202)
T ss_pred eeccCCccceEEE-----ecccceEEEEeecchhccCCCCCCc--------hhhhhccccc----------------hhh
Confidence 9999999999998 8899999998876533332211100 0001111100 001
Q ss_pred EEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEcc
Q 005315 435 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSP 512 (702)
Q Consensus 435 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~sp 512 (702)
|- ..-.+....+.+|...|+-++|+|.-..|++++.|. .|++|.+...+. -.+.+..+| .|.++.|+|
T Consensus 191 fg---~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR---qVKlWrmnetKa----WEvDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 191 FG---QTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKA----WEVDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred cC---CcCeeeeeeecccccccceEEecCCcceEEecCCcc---eeeEEEeccccc----eeehhhhcccCCcceEEecC
Confidence 10 001122244679999999999999999999999998 999999964432 245555566 799999999
Q ss_pred CCCEEEEEeccCCCceEEEEECCCcceeeec--ccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 513 SGRFIVLAGLKGFNGQLEFYNVDELETMATA--EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 513 dg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~--~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
....+++.+. |+.|++||+...+.+.+. .+...+.++-.|....+|.|-. +++.+|.+.
T Consensus 261 ~q~lIlSnsE---DksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHD------sGm~VFkle 321 (1202)
T KOG0292|consen 261 HQDLILSNSE---DKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHD------SGMIVFKLE 321 (1202)
T ss_pred ccceeEecCC---CccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecC------CceEEEEEc
Confidence 9999999998 999999999987777664 6678889999999987776654 555555543
No 50
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.7e-24 Score=192.59 Aligned_cols=281 Identities=16% Similarity=0.299 Sum_probs=207.8
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeec--cCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
...|.+++|+-+|.+|++++.+ +++.||++..++.+..+ .+|...+. .+.|+|..
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~d----------ktv~v~n~e~~r~~~~~~~~gh~~svd-------------ql~w~~~~ 76 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFD----------KTVSVWNLERDRFRKELVYRGHTDSVD-------------QLCWDPKH 76 (313)
T ss_pred hhcceEEEEcccCceeeecccC----------CceEEEEecchhhhhhhcccCCCcchh-------------hheeCCCC
Confidence 4459999999999999999999 99999999777554443 34544432 56777634
Q ss_pred CcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecc
Q 005315 321 DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS 399 (702)
Q Consensus 321 g~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 399 (702)
...|++++ |..|++||...++.........++ ..+.|+|+|.++++ ++..-.|..++..+.+.+....+ .
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~-------~~kdD~it~id~r~~~~~~~~~~-~ 147 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAV-------GNKDDRITFIDARTYKIVNEEQF-K 147 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEE-------ecCcccEEEEEecccceeehhcc-c
Confidence 55777776 999999999998887655444444 45799999999998 45555666777766665544332 2
Q ss_pred cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCe
Q 005315 400 VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD 479 (702)
Q Consensus 400 ~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~ 479 (702)
.....+.|+.++..++.....+. ++|.....- .....+.+|.....++.|+|+|++||+|+.|. .
T Consensus 148 ~e~ne~~w~~~nd~Fflt~GlG~---------v~ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADA---l 212 (313)
T KOG1407|consen 148 FEVNEISWNNSNDLFFLTNGLGC---------VEILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADA---L 212 (313)
T ss_pred ceeeeeeecCCCCEEEEecCCce---------EEEEecccc---ccccccccCCcceEEEEECCCCceEeeccccc---e
Confidence 22334578877776666555444 455544421 12345778999999999999999999999999 8
Q ss_pred EEEEEeecccCcCceEEEEEcCC--CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc-cCceeeeEECCC
Q 005315 480 ISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDPT 556 (702)
Q Consensus 480 v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~-~~~i~~~~~spd 556 (702)
+.+||+...- .++.+.. -+|..++||.+|++||+++. |-.|-|-++++|..+...+ .++...++|+|.
T Consensus 213 vSLWD~~ELi------C~R~isRldwpVRTlSFS~dg~~lASaSE---Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 213 VSLWDVDELI------CERCISRLDWPVRTLSFSHDGRMLASASE---DHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK 283 (313)
T ss_pred eeccChhHhh------hheeeccccCceEEEEeccCcceeeccCc---cceEEeEecccCCeEEEeeccCCceeEEecCC
Confidence 9999995432 4455543 38999999999999999998 9999999999999887754 477889999999
Q ss_pred CCEEEEEEeec----ccccccEEEEEe
Q 005315 557 GRYVATAVTSV----HEMENGFNIWSF 579 (702)
Q Consensus 557 g~~l~t~s~~~----~~~d~~v~iw~~ 579 (702)
...||.+..+. .+-.++++||-+
T Consensus 284 ~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 284 RPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred CceeeEEecCCCCccccccceeEEecC
Confidence 99999998741 111256777644
No 51
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=9.5e-25 Score=225.36 Aligned_cols=205 Identities=14% Similarity=0.253 Sum_probs=177.3
Q ss_pred CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005315 195 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRD 271 (702)
Q Consensus 195 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~ 271 (702)
....+-+|.++|..+.|||+.++|++++.|+ +++|.+. ++..+..+. |. .|.++.|+|-|-|+||++.|
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~-t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D------- 514 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD-TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHD------- 514 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecc-cceeEEEecCCCcceeeEEecCCceEEEecCCC-------
Confidence 3345789999999999999999999999998 8999999 888777663 33 59999999999999999999
Q ss_pred CCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeecc
Q 005315 272 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 350 (702)
Q Consensus 272 ~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~ 350 (702)
++.++|......++|.|.+|...+. |++|+| +..|+|+++ |.++++||+.+|..++.+..|.
T Consensus 515 ---~tArLWs~d~~~PlRifaghlsDV~-------------cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~ 577 (707)
T KOG0263|consen 515 ---QTARLWSTDHNKPLRIFAGHLSDVD-------------CVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK 577 (707)
T ss_pred ---ceeeeeecccCCchhhhcccccccc-------------eEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCC
Confidence 9999999999999999999998874 899999 999999999 9999999999999999999999
Q ss_pred CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 351 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 351 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
.+|.+++|||+|++|++ |+.++.+.+ |+++....+
T Consensus 578 ~~V~al~~Sp~Gr~LaS-----g~ed~~I~i--WDl~~~~~v-------------------------------------- 612 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLAS-----GDEDGLIKI--WDLANGSLV-------------------------------------- 612 (707)
T ss_pred CceEEEEEcCCCceEee-----cccCCcEEE--EEcCCCcch--------------------------------------
Confidence 99999999999999999 555555444 443322211
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
..+.+|.+.|.++.||.+|..||+++.|. +|++||+...
T Consensus 613 ----------------~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn---sV~lWD~~~~ 651 (707)
T KOG0263|consen 613 ----------------KQLKGHTGTIYSLSFSRDGNVLASGGADN---SVRLWDLTKV 651 (707)
T ss_pred ----------------hhhhcccCceeEEEEecCCCEEEecCCCC---eEEEEEchhh
Confidence 23447889999999999999999999998 9999998643
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=1e-23 Score=212.69 Aligned_cols=270 Identities=19% Similarity=0.365 Sum_probs=211.1
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 322 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~ 322 (702)
...|.+++|+|++++|++++.+ +.|.+|++.+++....+..|...+. .+.|++ +++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~----------g~i~i~~~~~~~~~~~~~~~~~~i~-------------~~~~~~-~~~ 64 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGD----------GTIKVWDLETGELLRTLKGHTGPVR-------------DVAASA-DGT 64 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecC----------cEEEEEEeeCCCcEEEEecCCccee-------------EEEECC-CCC
Confidence 3459999999999999999998 9999999998888888877765542 689999 999
Q ss_pred EEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccc
Q 005315 323 YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 401 (702)
Q Consensus 323 ~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 401 (702)
++++++ ++.|.+|++.+++.+.....+...+.++.|+|++.++++ ++.++. +.+|+..+.+
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~--i~~~~~~~~~----------- 126 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS-----SSRDKT--IKVWDVETGK----------- 126 (289)
T ss_pred EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEE-----ecCCCe--EEEEECCCcE-----------
Confidence 999888 999999999987666555556667899999999887776 333443 3334332110
Q ss_pred cceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEE
Q 005315 402 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 481 (702)
Q Consensus 402 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 481 (702)
....+..|...+.+++|+|++.++++++.++ .|.
T Consensus 127 -------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~ 160 (289)
T cd00200 127 -------------------------------------------CLTTLRGHTDWVNSVAFSPDGTFVASSSQDG---TIK 160 (289)
T ss_pred -------------------------------------------EEEEeccCCCcEEEEEEcCcCCEEEEEcCCC---cEE
Confidence 0012225678899999999988888877677 899
Q ss_pred EEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCC
Q 005315 482 FYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTG 557 (702)
Q Consensus 482 i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg 557 (702)
+|+++.+. .+..+. ...+.++.|+|+++.+++++. +|.|.+||+..++.+.. .+...+.++.|+|++
T Consensus 161 i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 161 LWDLRTGK------CVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred EEEccccc------cceeEecCccccceEEECCCcCEEEEecC---CCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence 99997543 233333 346899999999999999987 99999999998777665 445689999999999
Q ss_pred CEEEEEEeecccccccEEEEEec-cceeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 558 RYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 558 ~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.++++++. ++.+++|++. +..+... +...+.++.|+|+++.+++++.++.++
T Consensus 232 ~~~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 232 YLLASGSE-----DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred cEEEEEcC-----CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 99999987 8999999987 4444333 456899999999999999988877653
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.2e-24 Score=188.62 Aligned_cols=268 Identities=12% Similarity=0.219 Sum_probs=216.4
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
+...|..+.|+-||+|.++++.| .+|++|+...|.+++++.+|...+. ....+. |.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsd----------rtvrLWNp~rg~liktYsghG~EVl-------------D~~~s~-Dn 71 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSD----------RTVRLWNPLRGALIKTYSGHGHEVL-------------DAALSS-DN 71 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCC----------ceEEeecccccceeeeecCCCceee-------------eccccc-cc
Confidence 44569999999999999999999 9999999999999999999988763 456677 88
Q ss_pred cEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc
Q 005315 322 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 400 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 400 (702)
..|++++ |..+.+||+.+|+++.+...|...|+.+.|+.....+++ ++-|...++|.....+.+++....
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~S-----gsfD~s~r~wDCRS~s~ePiQild---- 142 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVAS-----GSFDSSVRLWDCRSRSFEPIQILD---- 142 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEe-----ccccceeEEEEcccCCCCccchhh----
Confidence 8888887 999999999999999999999999999999999999998 888888777665443333222111
Q ss_pred ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeE
Q 005315 401 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 480 (702)
Q Consensus 401 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 480 (702)
...+.|.++.. .++.|+.++.|| ++
T Consensus 143 --------------------------------------------------ea~D~V~Si~v--~~heIvaGS~DG---tv 167 (307)
T KOG0316|consen 143 --------------------------------------------------EAKDGVSSIDV--AEHEIVAGSVDG---TV 167 (307)
T ss_pred --------------------------------------------------hhcCceeEEEe--cccEEEeeccCC---cE
Confidence 11455666655 467899999999 99
Q ss_pred EEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccC--ceeeeEECCC
Q 005315 481 SFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHF--MATDVEWDPT 556 (702)
Q Consensus 481 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~--~i~~~~~spd 556 (702)
+.||++.+. .....-+++|++++||++|+.+++++. +++|++.|-.+++++.. +|.. .-.+++++..
T Consensus 168 RtydiR~G~------l~sDy~g~pit~vs~s~d~nc~La~~l---~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 168 RTYDIRKGT------LSSDYFGHPITSVSFSKDGNCSLASSL---DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred EEEEeecce------eehhhcCCcceeEEecCCCCEEEEeec---cceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence 999998765 455566899999999999999999998 99999999999999875 3332 2346788888
Q ss_pred CCEEEEEEeecccccccEEEEEec-cceeeeecc--c-cEeeEEEeeCCCCCCChhhHH
Q 005315 557 GRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLK--D-HFFQFLWRPRPPSFLTPEKEE 611 (702)
Q Consensus 557 g~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~~~--~-~i~~~~w~p~~~~l~s~~~d~ 611 (702)
...+++++. ||.+++||+. +.++.+... . .+.++.++|.-..++++...+
T Consensus 239 dthV~sgSE-----DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 239 DTHVFSGSE-----DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG 292 (307)
T ss_pred ceeEEeccC-----CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence 889999999 9999999976 555555422 3 378999999988877765443
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=3.7e-25 Score=204.25 Aligned_cols=276 Identities=16% Similarity=0.217 Sum_probs=217.6
Q ss_pred CCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee----------cCCCeeEEEecCCCCEEEEEcCCCCCCC
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY----------AHPQVKLIDFSPGEKYLVTYSSHEPSNP 269 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~----------~~~~v~~i~fSpdg~~l~t~s~d~~~~~ 269 (702)
+....+-|..|||||+||++|+-|| |-+|+.. +++....+ ....|.|+.||.|...||+|+.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~-~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD----- 284 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYT-TGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD----- 284 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhc-cchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC-----
Confidence 3445678999999999999999999 7799987 66543322 23359999999999999999999
Q ss_pred cCCCccEEEEEEccCCcEEeecc-CCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccccee
Q 005315 270 RDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 347 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~ 347 (702)
|.|+||.+.+|.+++.|. .|...++ +++||. |+..+.+++ |.+++|.-+.+|+++....
T Consensus 285 -----GkIKvWri~tG~ClRrFdrAHtkGvt-------------~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfr 345 (508)
T KOG0275|consen 285 -----GKIKVWRIETGQCLRRFDRAHTKGVT-------------CLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFR 345 (508)
T ss_pred -----CcEEEEEEecchHHHHhhhhhccCee-------------EEEEcc-CcchhhcccccceEEEeccccchhHHHhc
Confidence 999999999999999997 5655543 899999 999999998 9999999999999999999
Q ss_pred eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccc
Q 005315 348 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 348 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
.|..-|+...|+++|..+++ ++.|++++||... +.+.+. .|-|-
T Consensus 346 GHsSyvn~a~ft~dG~~iis-----aSsDgtvkvW~~K--tteC~~------------Tfk~~----------------- 389 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDGHHIIS-----ASSDGTVKVWHGK--TTECLS------------TFKPL----------------- 389 (508)
T ss_pred CccccccceEEcCCCCeEEE-----ecCCccEEEecCc--chhhhh------------hccCC-----------------
Confidence 99999999999999999999 8888888876432 111111 01111
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-----
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----- 501 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----- 501 (702)
+...+|+++..-| +-..|+++.... +|.|.++... .++++.
T Consensus 390 -----------------------~~d~~vnsv~~~PKnpeh~iVCNrsn---tv~imn~qGQ-------vVrsfsSGkRE 436 (508)
T KOG0275|consen 390 -----------------------GTDYPVNSVILLPKNPEHFIVCNRSN---TVYIMNMQGQ-------VVRSFSSGKRE 436 (508)
T ss_pred -----------------------CCcccceeEEEcCCCCceEEEEcCCC---eEEEEeccce-------EEeeeccCCcc
Confidence 1144556665556 345666666555 8888888421 556554
Q ss_pred CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 502 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 502 ~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
++..-+.+.||.|.++++.+. |+.++-|.+.+|++-.+ .|...+..++-.|.-..||+.+. |+.+++|.
T Consensus 437 gGdFi~~~lSpkGewiYcigE---D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE-----DgllKLWk 507 (508)
T KOG0275|consen 437 GGDFINAILSPKGEWIYCIGE---DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE-----DGLLKLWK 507 (508)
T ss_pred CCceEEEEecCCCcEEEEEcc---CcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc-----cchhhhcC
Confidence 234567789999999999998 99999999998877654 56677888999999999999999 99999995
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=9e-24 Score=193.91 Aligned_cols=283 Identities=14% Similarity=0.173 Sum_probs=222.9
Q ss_pred CccccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcce
Q 005315 159 GENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR 237 (702)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~ 237 (702)
.+.+....++|+| ..|+.++.|..+++||.....+-..++++|.+.|..+.|.+||..|++++.|. ++.||.. ++++
T Consensus 47 ~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-tG~~ 124 (338)
T KOG0265|consen 47 KGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-TGKR 124 (338)
T ss_pred cceEEEEEECCCC-CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc-ccee
Confidence 3566777888855 46666677888889997555555567789999999999999999999999998 8899999 9998
Q ss_pred eeeec-CCC-eeEEEecCCCCE-EEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceE
Q 005315 238 LMRYA-HPQ-VKLIDFSPGEKY-LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 238 ~~~~~-~~~-v~~i~fSpdg~~-l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 314 (702)
+.++. |.. |+++.-+.-|.. +.+++.| ++++|||+++...++++....... ++
T Consensus 125 ~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD----------~t~kl~D~R~k~~~~t~~~kyqlt--------------Av 180 (338)
T KOG0265|consen 125 IRKHKGHTSFVNSLDPSRRGPQLVCSGSDD----------GTLKLWDIRKKEAIKTFENKYQLT--------------AV 180 (338)
T ss_pred eehhccccceeeecCccccCCeEEEecCCC----------ceEEEEeecccchhhccccceeEE--------------EE
Confidence 88874 444 777775545654 5566777 999999999999988886655443 78
Q ss_pred EEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 315 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 315 ~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
.|.. .+..+.+++ |+.|++||+.....+.....|...|..+..+|+|.++.. .+.+..+++|.+..
T Consensus 181 ~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls-----nsMd~tvrvwd~rp------- 247 (338)
T KOG0265|consen 181 GFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS-----NSMDNTVRVWDVRP------- 247 (338)
T ss_pred Eecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccc-----ccccceEEEEEecc-------
Confidence 9998 888888888 999999999988888888899999999999999999998 66778877776542
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 473 (702)
|.|..+.+.+.... . ..+ ......++|||+++++.+++.
T Consensus 248 -------------~~p~~R~v~if~g~------------------~-------hnf---eknlL~cswsp~~~~i~ags~ 286 (338)
T KOG0265|consen 248 -------------FAPSQRCVKIFQGH------------------I-------HNF---EKNLLKCSWSPNGTKITAGSA 286 (338)
T ss_pred -------------cCCCCceEEEeecc------------------h-------hhh---hhhcceeeccCCCCccccccc
Confidence 44444433221110 0 001 233456799999999999999
Q ss_pred CCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEE
Q 005315 474 DSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYN 533 (702)
Q Consensus 474 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d 533 (702)
|. .+++||..... .+..+++| .|+++.|+|...+|.+++. |.+|++=.
T Consensus 287 dr---~vyvwd~~~r~------~lyklpGh~gsvn~~~Fhp~e~iils~~s---dk~i~lge 336 (338)
T KOG0265|consen 287 DR---FVYVWDTTSRR------ILYKLPGHYGSVNEVDFHPTEPIILSCSS---DKTIYLGE 336 (338)
T ss_pred cc---eEEEeeccccc------EEEEcCCcceeEEEeeecCCCcEEEEecc---CceeEeec
Confidence 99 99999985543 77888877 6999999999999999998 88887643
No 56
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.3e-23 Score=212.92 Aligned_cols=233 Identities=13% Similarity=0.207 Sum_probs=174.9
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEcc---CCCEEEEEEcccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS---SGDYLAVKVDRYTKTKKST 428 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~g~~l~~~~~~~~~~~~~~ 428 (702)
++.+++.||+|++||. +|..+.+.+|++.+.+.+.....+......+.++. ..+.|+.++.+..
T Consensus 461 G~R~~~vSp~gqhLAs-------GDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRl------ 527 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLAS-------GDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRL------ 527 (1080)
T ss_pred ceEEEEECCCcceecc-------cCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCce------
Confidence 4789999999999998 77777777888877665555555566666666653 2356666666655
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC--cEEEEEEcCCCCCeEEEEEeecccCcCce--EEEEEcCCCc
Q 005315 429 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--HRFAVIHGDSPRPDISFYSMRTAQHAGRV--SKLTTLKGKQ 504 (702)
Q Consensus 429 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--~~l~~~~~d~~~~~v~i~d~~~~~~~~~~--~~~~~~~~~~ 504 (702)
+++|++...-.+ ..++.+|...|+++.|.-+| ..+++++.|. .+ .|+...+.+..+. ....++....
T Consensus 528 ---IHV~Dv~rny~l--~qtld~HSssITsvKFa~~gln~~MiscGADk---si-mFr~~qk~~~g~~f~r~t~t~~ktT 598 (1080)
T KOG1408|consen 528 ---IHVYDVKRNYDL--VQTLDGHSSSITSVKFACNGLNRKMISCGADK---SI-MFRVNQKASSGRLFPRHTQTLSKTT 598 (1080)
T ss_pred ---EEEEecccccch--hhhhcccccceeEEEEeecCCceEEEeccCch---hh-heehhccccCceeccccccccccce
Confidence 677777643322 24577899999999999887 6777777776 33 3444322221111 1122333446
Q ss_pred eeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-----cccCceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 505 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 505 v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-----~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
++.++..|..+++++++. |..|+||++.++++..+ .|.+....+..+|.|-|||+... |.++.++|+
T Consensus 599 lYDm~Vdp~~k~v~t~cQ---Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-----dktl~~~Df 670 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQ---DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-----DKTLCFVDF 670 (1080)
T ss_pred EEEeeeCCCcceEEEEec---ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-----CCceEEEEe
Confidence 889999999999999998 99999999999988765 34467788999999999999999 999999998
Q ss_pred c-cceeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 580 N-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 580 ~-g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
. |+.+.+. |.+.++.+.|.+|.+.|++.+.|+.|-
T Consensus 671 ~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 671 VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred ccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 6 6666654 778999999999999999999998874
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=1.8e-23 Score=188.76 Aligned_cols=287 Identities=13% Similarity=0.177 Sum_probs=223.7
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
|...++.|.++.+|..|.+++.| .++.||-..+|+.+-++.+|.+.+ | ++...- +.
T Consensus 9 HERplTqiKyN~eGDLlFscaKD----------~~~~vw~s~nGerlGty~GHtGav------------W-~~Did~-~s 64 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKD----------STPTVWYSLNGERLGTYDGHTGAV------------W-CCDIDW-DS 64 (327)
T ss_pred CccccceEEecCCCcEEEEecCC----------CCceEEEecCCceeeeecCCCceE------------E-EEEecC-Cc
Confidence 33459999999999999999999 889999988999999999999988 7 577777 88
Q ss_pred cEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC-------cceee
Q 005315 322 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS-------KEELR 393 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~-------~~~~~ 393 (702)
+++++++ |.++++||+++|+.+..... ...|..+.|+++|+++++..... .+.+..|.+++++. ..++.
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~--mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQ--MGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhh--cCcceEEEEEEccCChhhhcccCceE
Confidence 9999999 99999999999998865533 23589999999999998866555 66777888888763 23344
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 473 (702)
.............|+|-+++|+++..++. +..|+++.....+.. ...|...|++++++|+..+|++++.
T Consensus 142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~---------is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGETIIAGHEDGS---------ISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred EecCCccceeeeeecccCCEEEEecCCCc---------EEEEEcccCceeeec--hhhhccccccccccCCcceEEeccc
Confidence 33334445566789999999999999877 788888764333222 2357889999999999999999999
Q ss_pred CCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceE------------EEEECCCccee
Q 005315 474 DSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQL------------EFYNVDELETM 540 (702)
Q Consensus 474 d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v------------~i~d~~~~~~~ 540 (702)
|. +-++||+.+-. .++++. ..|+++.+++|--.++++++..+ ...| ++|++-..+.+
T Consensus 211 Dt---takl~D~~tl~------v~Kty~te~PvN~aaisP~~d~VilgGGqe-A~dVTTT~~r~GKFEArFyh~i~eEEi 280 (327)
T KOG0643|consen 211 DT---TAKLVDVRTLE------VLKTYTTERPVNTAAISPLLDHVILGGGQE-AMDVTTTSTRAGKFEARFYHLIFEEEI 280 (327)
T ss_pred Cc---cceeeecccee------eEEEeeecccccceecccccceEEecCCce-eeeeeeecccccchhhhHHHHHHHHHh
Confidence 99 89999996543 666665 45899999999988888876311 1112 12222112222
Q ss_pred e--ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 541 A--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 541 ~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
. ++|-++|++++|+|+|+..++|+. ||.|++..++.
T Consensus 281 grvkGHFGPINsvAfhPdGksYsSGGE-----DG~VR~h~Fd~ 318 (327)
T KOG0643|consen 281 GRVKGHFGPINSVAFHPDGKSYSSGGE-----DGYVRLHHFDS 318 (327)
T ss_pred ccccccccCcceeEECCCCcccccCCC-----CceEEEEEecc
Confidence 2 367799999999999999999999 99999987763
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=211.95 Aligned_cols=285 Identities=14% Similarity=0.273 Sum_probs=215.9
Q ss_pred CCCCCCccccccccCCCCCc---------eEEEEe-CCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeC
Q 005315 154 KPYTPGENLQKWLTDEKARD---------QFVIRS-GTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR 223 (702)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~ 223 (702)
.-|.|+.+...|-.+.+|-. .+++.+ -+..+.+|+.-....+++.|.+|..+|..++||++|+.+.+++-
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec
Confidence 44556667777766665532 233444 46677799986678899999999999999999999999999999
Q ss_pred Cc-eEEeecCcCcceeeeecCCC-eeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCccccc
Q 005315 224 QG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 300 (702)
Q Consensus 224 ~~-i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg-~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~ 300 (702)
|+ +++||.+ +++++.+|+... ++|+.|.|++ +.+++|+.+ +.|+.||+++|+.++.+..|.+.+.
T Consensus 279 D~~lKlwDtE-TG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd----------~ki~~wDiRs~kvvqeYd~hLg~i~- 346 (503)
T KOG0282|consen 279 DRFLKLWDTE-TGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSD----------KKIRQWDIRSGKVVQEYDRHLGAIL- 346 (503)
T ss_pred ceeeeeeccc-cceEEEEEecCCCceeeecCCCCCcEEEEecCC----------CcEEEEeccchHHHHHHHhhhhhee-
Confidence 99 8899999 999999998776 8999999999 778888888 9999999999999999998877753
Q ss_pred CCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccccee-eccCCeeEEEeCCCCCeEEEEeecCCCCCCC
Q 005315 301 GGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQP 378 (702)
Q Consensus 301 ~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 378 (702)
.+.|-+ +|+++++.+ ++.++||+....-.+.... ...-...++..+|++++++. -+.+
T Consensus 347 ------------~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a-----Qs~d-- 406 (503)
T KOG0282|consen 347 ------------DITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA-----QSMD-- 406 (503)
T ss_pred ------------eeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh-----hccC--
Confidence 789999 999999998 9999999988654432111 12223567888999988886 2222
Q ss_pred cEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC--CCce
Q 005315 379 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK--NDKI 456 (702)
Q Consensus 379 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h--~~~v 456 (702)
.+|.++.+. ..|.+..+ ..+.+| .+.-
T Consensus 407 N~i~ifs~~---------------------------------------------~~~r~nkk------K~feGh~vaGys 435 (503)
T KOG0282|consen 407 NYIAIFSTV---------------------------------------------PPFRLNKK------KRFEGHSVAGYS 435 (503)
T ss_pred ceEEEEecc---------------------------------------------cccccCHh------hhhcceeccCce
Confidence 233333221 11111100 112233 4566
Q ss_pred eEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEEEEccCC-CEEEEEeccCCCceEEEEE
Q 005315 457 IAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSG-RFIVLAGLKGFNGQLEFYN 533 (702)
Q Consensus 457 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg-~~l~~~~~~~~dg~v~i~d 533 (702)
..+.|||||.+|++|.++| .+.+||.++.. .+..+.. .++..+.|+|.. ..+|+++. +|.|++|+
T Consensus 436 ~~v~fSpDG~~l~SGdsdG---~v~~wdwkt~k------l~~~lkah~~~ci~v~wHP~e~Skvat~~w---~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDG---KVNFWDWKTTK------LVSKLKAHDQPCIGVDWHPVEPSKVATCGW---DGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCc---cEEEeechhhh------hhhccccCCcceEEEEecCCCcceeEeccc---CceeEecC
Confidence 7789999999999999999 99999997654 5555554 478999999975 46778887 99999996
No 59
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=3.9e-24 Score=227.72 Aligned_cols=272 Identities=17% Similarity=0.311 Sum_probs=218.5
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
...|.++.|||+|++|++++.+ +.+++|+..+++ .++.+.+|...+. .++|+| +
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~----------~~i~~~~~~~~~~~~~~~l~~h~~~v~-------------~~~fs~-d 214 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSD----------GLIRIWKLEGIKSNLLRELSGHTRGVS-------------DVAFSP-D 214 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCC----------CcEEEeecccccchhhcccccccccee-------------eeEECC-C
Confidence 4569999999999999999999 999999997777 7777777766653 789999 9
Q ss_pred CcEEEEec-CCeEEEEec-CCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec
Q 005315 321 DKYFAKLG-KNMISVYET-ESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 398 (702)
Q Consensus 321 g~~la~~~-d~~i~v~d~-~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 398 (702)
++++++++ |++|+||++ ..+..+.....|...|.+++|+|+|+.+++ |+.|+.++||.... .
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~S-----gs~D~tvriWd~~~--~--------- 278 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVS-----GSDDGTVRIWDVRT--G--------- 278 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEE-----ecCCCcEEEEeccC--C---------
Confidence 99999999 999999999 445677777788899999999999988888 88888877765431 0
Q ss_pred ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCC
Q 005315 399 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 478 (702)
Q Consensus 399 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 478 (702)
.....+.+|.+.|++++|+++|++|++++.|+
T Consensus 279 ---------------------------------------------~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~--- 310 (456)
T KOG0266|consen 279 ---------------------------------------------ECVRKLKGHSDGISGLAFSPDGNLLVSASYDG--- 310 (456)
T ss_pred ---------------------------------------------eEEEeeeccCCceEEEEECCCCCEEEEcCCCc---
Confidence 01134568899999999999999999998898
Q ss_pred eEEEEEeecccCcCceEEEEEcC---CC-ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccC---cee
Q 005315 479 DISFYSMRTAQHAGRVSKLTTLK---GK-QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHF---MAT 549 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~~---~~-~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~---~i~ 549 (702)
.|++||+.++... .+..+. .. +++.+.|+|+|.++++++. |+.+++||+..+..+.. .|.. .+.
T Consensus 311 ~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~---d~~~~~w~l~~~~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 311 TIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSASL---DRTLKLWDLRSGKSVGTYTGHSNLVRCIF 383 (456)
T ss_pred cEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEecC---CCeEEEEEccCCcceeeecccCCcceeEe
Confidence 9999999766521 122332 22 5899999999999999998 99999999998776654 3332 344
Q ss_pred eeEECCCCCEEEEEEeecccccccEEEEEec-cceee--eec-cccEeeEEEeeCCCCCCChh--hHHHHH
Q 005315 550 DVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLY--RTL-KDHFFQFLWRPRPPSFLTPE--KEEEIA 614 (702)
Q Consensus 550 ~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~--~~~-~~~i~~~~w~p~~~~l~s~~--~d~~i~ 614 (702)
+...++.|+++++++. |+.|.+|++. +..+. ..| ...+..+.|+|..+.+++.+ .|+.++
T Consensus 384 ~~~~~~~~~~i~sg~~-----d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSE-----DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred cccccCCCCeEEEEeC-----CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEE
Confidence 5666889999999999 9999999998 43333 235 67889999999999999877 455443
No 60
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=4.2e-24 Score=200.10 Aligned_cols=270 Identities=17% Similarity=0.293 Sum_probs=224.6
Q ss_pred ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 241 YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 241 ~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
.|..-|.|+++-|...+++||+.| ++|+|||+.+|++..++.+|...+. .+++|+ -
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~D----------rtikIwDlatg~LkltltGhi~~vr-------------~vavS~-r 204 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSAD----------RTIKIWDLATGQLKLTLTGHIETVR-------------GVAVSK-R 204 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCC----------ceeEEEEcccCeEEEeecchhheee-------------eeeecc-c
Confidence 344459999999999999999999 9999999999999999999987763 679999 8
Q ss_pred CcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecc
Q 005315 321 DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS 399 (702)
Q Consensus 321 g~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 399 (702)
..|+.+++ |+.|+.||+...+.++....|..+|.+++.+|.-..|++ ++.|..++||.+..
T Consensus 205 HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t-----~grDst~RvWDiRt------------- 266 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVT-----GGRDSTIRVWDIRT------------- 266 (460)
T ss_pred CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEe-----cCCcceEEEeeecc-------------
Confidence 88999999 999999999999999999999999999999999999998 88887777665432
Q ss_pred cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCe
Q 005315 400 VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD 479 (702)
Q Consensus 400 ~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~ 479 (702)
+ .....+.+|..+|.++.+.|-...+++++.|+ +
T Consensus 267 ----------------------------------------r---~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~---t 300 (460)
T KOG0285|consen 267 ----------------------------------------R---ASVHVLSGHTNPVASVMCQPTDPQVITGSHDS---T 300 (460)
T ss_pred ----------------------------------------c---ceEEEecCCCCcceeEEeecCCCceEEecCCc---e
Confidence 1 11234668999999999999888999999999 9
Q ss_pred EEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECC
Q 005315 480 ISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP 555 (702)
Q Consensus 480 v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~sp 555 (702)
|++||++.++ ...++. ...+.+++.+|.-..+++++. ..++-|++..+..+.. .|...++.++...
T Consensus 301 vrlWDl~agk------t~~tlt~hkksvral~lhP~e~~fASas~----dnik~w~~p~g~f~~nlsgh~~iintl~~ns 370 (460)
T KOG0285|consen 301 VRLWDLRAGK------TMITLTHHKKSVRALCLHPKENLFASASP----DNIKQWKLPEGEFLQNLSGHNAIINTLSVNS 370 (460)
T ss_pred EEEeeeccCc------eeEeeecccceeeEEecCCchhhhhccCC----ccceeccCCccchhhccccccceeeeeeecc
Confidence 9999998766 333443 447899999999988888884 6799999998887764 6667888999988
Q ss_pred CCCEEEEEEeecccccccEEEEEeccceeeee-----------ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 556 TGRYVATAVTSVHEMENGFNIWSFNGKLLYRT-----------LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 556 dg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~-----------~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
|| ++++|+. .+.+.+||.....-++. ....|+..+|...+..|+|++.|++|+
T Consensus 371 D~-v~~~G~d-----ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk 434 (460)
T KOG0285|consen 371 DG-VLVSGGD-----NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIK 434 (460)
T ss_pred Cc-eEEEcCC-----ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceE
Confidence 87 5667777 79999999874322211 124688899999999999999999997
No 61
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=6.4e-24 Score=226.77 Aligned_cols=267 Identities=20% Similarity=0.333 Sum_probs=190.7
Q ss_pred CCceEEEecCCCC-----------CCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCc--------------
Q 005315 180 GTDTEVLWNDARH-----------LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-------------- 233 (702)
Q Consensus 180 ~~~~~~~w~~~~~-----------~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-------------- 233 (702)
.++..++|+...- .+..-....|.++|+|+.|||||+|||+|+.|+ |.||....
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~ 114 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK 114 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence 3566668985311 112223467999999999999999999999999 66997651
Q ss_pred ---Ccceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCC
Q 005315 234 ---TFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAG 308 (702)
Q Consensus 234 ---~~~~~~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~ 308 (702)
.++.+..+ .|+ .|..+.|||++.+||+++.| ++|.||+..+.+.++.+.+|...+-
T Consensus 115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D----------nsViiwn~~tF~~~~vl~~H~s~VK--------- 175 (942)
T KOG0973|consen 115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD----------NSVIIWNAKTFELLKVLRGHQSLVK--------- 175 (942)
T ss_pred ccceeeEEEEEecCCCccceeccCCCccEEEEeccc----------ceEEEEccccceeeeeeeccccccc---------
Confidence 11233333 344 59999999999999999999 9999999999999999999987763
Q ss_pred cccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccC------CeeEEEeCCCCCeEEEEeecCCCCCCCcEE
Q 005315 309 VSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE------NVMDFSWSPTDPIISLFVPELGGGNQPARV 381 (702)
Q Consensus 309 ~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~------~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 381 (702)
.+.|.| -|+|||+.+ |++|+||.+.+..+......+.+ -+..++|||||++|++. .+-
T Consensus 176 ----Gvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~-----nA~----- 240 (942)
T KOG0973|consen 176 ----GVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP-----NAV----- 240 (942)
T ss_pred ----ceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch-----hhc-----
Confidence 478999 999999999 99999999877655433322222 26678888888888861 110
Q ss_pred EEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEE
Q 005315 382 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 461 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 461 (702)
+ .+...+....+++ |. ....+-+|..++.++.|
T Consensus 241 --------------------------n-~~~~~~~IieR~t------------Wk--------~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 241 --------------------------N-GGKSTIAIIERGT------------WK--------VDKDLVGHSAPVEVVRF 273 (942)
T ss_pred --------------------------c-CCcceeEEEecCC------------ce--------eeeeeecCCCceEEEEe
Confidence 0 1111111111111 11 11345588889999999
Q ss_pred eeC-----Cc------------EEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccC
Q 005315 462 EPK-----GH------------RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKG 524 (702)
Q Consensus 462 sp~-----g~------------~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~ 524 (702)
+|. .+ .+|+++.|+ +|.||...... ..-.++.+..+.|..++|||||..|++++.
T Consensus 274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr---SlSVW~T~~~R---Pl~vi~~lf~~SI~DmsWspdG~~LfacS~-- 345 (942)
T KOG0973|consen 274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDR---SLSVWNTALPR---PLFVIHNLFNKSIVDMSWSPDGFSLFACSL-- 345 (942)
T ss_pred ChHHhccccccCCccCCCcceEEEEEecCCc---cEEEEecCCCC---chhhhhhhhcCceeeeeEcCCCCeEEEEec--
Confidence 872 11 456677788 99999974322 122344455789999999999999999999
Q ss_pred CCceEEEEECCC
Q 005315 525 FNGQLEFYNVDE 536 (702)
Q Consensus 525 ~dg~v~i~d~~~ 536 (702)
||+|.++.++.
T Consensus 346 -DGtV~~i~Fee 356 (942)
T KOG0973|consen 346 -DGTVALIHFEE 356 (942)
T ss_pred -CCeEEEEEcch
Confidence 99999999874
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=4.6e-24 Score=208.92 Aligned_cols=302 Identities=14% Similarity=0.196 Sum_probs=207.4
Q ss_pred CCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee------cCCCeeEEEecCCCCEEEEEcCCC
Q 005315 193 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY------AHPQVKLIDFSPGEKYLVTYSSHE 265 (702)
Q Consensus 193 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~------~~~~v~~i~fSpdg~~l~t~s~d~ 265 (702)
...+..+++|+..|+.+++.|.|-.|++|+-|. |++||..+-......| ....|.+++||+.|..|++.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~- 235 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS- 235 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC-
Confidence 445567899999999999999999999999998 8899987322222222 23359999999999988888887
Q ss_pred CCCCcCCCccEEEEEEccCCcEEeeccCCCc-ccccCCCCC-CCCcccceEEEcCCCCc-EEEEec-CCeEEEEecCCcc
Q 005315 266 PSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGG-VAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFT 341 (702)
Q Consensus 266 ~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~-~~~~~~~~~-~~~~~w~~~~~s~~dg~-~la~~~-d~~i~v~d~~~~~ 341 (702)
...+|+| +.|..+..+..... ...+..+.+ +..+. |.+|.| +.+ .|.+++ |++++||++.
T Consensus 236 ---------aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt--~g~whP-~~k~~FlT~s~DgtlRiWdv~--- 299 (641)
T KOG0772|consen 236 ---------AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELT--CGCWHP-DNKEEFLTCSYDGTLRIWDVN--- 299 (641)
T ss_pred ---------cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeee--cccccc-CcccceEEecCCCcEEEEecC---
Confidence 7899999 56654433321111 000000000 11111 445555 332 333333 5666666554
Q ss_pred cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc--eeeee--eecccccceeEEccCCCEEEEE
Q 005315 342 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQK--NLFSVSDCKMYWQSSGDYLAVK 417 (702)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~--~~~~~~~~~~~~s~~g~~l~~~ 417 (702)
....+ .+..+ ....+....++|+++|+.+|.+
T Consensus 300 --------------------------------------------~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag 335 (641)
T KOG0772|consen 300 --------------------------------------------NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG 335 (641)
T ss_pred --------------------------------------------CchhheeEEeeccCCCcccCceeeecCCCcchhhhc
Confidence 22111 11111 1123344556899999999999
Q ss_pred EcccccccccccccEEEEEEecCCcceeEEEecCCCC--ceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceE
Q 005315 418 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 495 (702)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 495 (702)
+.++. +++|+............-.+|.. .|+|++||++|++|++-+.|. ++++||++..+.
T Consensus 336 c~DGS---------IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~---tLKvWDLrq~kk----- 398 (641)
T KOG0772|consen 336 CLDGS---------IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD---TLKVWDLRQFKK----- 398 (641)
T ss_pred ccCCc---------eeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC---ceeeeecccccc-----
Confidence 99988 89999866544433333447777 899999999999999999999 999999986543
Q ss_pred EEEEcC----CCceeEEEEccCCCEEEEEeccC---CCceEEEEECCCcceeeec--ccCceeeeEECCCCCEEEEEEee
Q 005315 496 KLTTLK----GKQANALFWSPSGRFIVLAGLKG---FNGQLEFYNVDELETMATA--EHFMATDVEWDPTGRYVATAVTS 566 (702)
Q Consensus 496 ~~~~~~----~~~v~~~~~spdg~~l~~~~~~~---~dg~v~i~d~~~~~~~~~~--~~~~i~~~~~spdg~~l~t~s~~ 566 (702)
++.... ..+-+.++|||+.+.|++|+... ..|.|.|||..+...+... ....|..+.|+|.=..|..++.
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg- 477 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG- 477 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC-
Confidence 333322 22567899999999999986521 4678999999988887763 3567888999999888999988
Q ss_pred cccccccEEEE
Q 005315 567 VHEMENGFNIW 577 (702)
Q Consensus 567 ~~~~d~~v~iw 577 (702)
||++++|
T Consensus 478 ----dG~~~vy 484 (641)
T KOG0772|consen 478 ----DGTAHVY 484 (641)
T ss_pred ----CCceEEE
Confidence 8999886
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=2.5e-24 Score=192.17 Aligned_cols=279 Identities=14% Similarity=0.245 Sum_probs=225.3
Q ss_pred cccccCCCcccceEEECC---CCcEEEEEeCCc-eEEeecCcCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCC
Q 005315 196 EPVYKRSYWTESFVQWSP---LGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNP 269 (702)
Q Consensus 196 ~~~~~~~~~~v~~v~~Sp---dg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~fSpdg~~l~t~s~d~~~~~ 269 (702)
.++..+|..+|-.++||| +|-+|++++.|+ -.+-+.+ ++.-+.+| .|.+ |.+..+..+....|+++.|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~-tgdwigtfeghkgavw~~~l~~na~~aasaaad----- 80 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD-TGDWIGTFEGHKGAVWSATLNKNATRAASAAAD----- 80 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC-CCCcEEeeeccCcceeeeecCchhhhhhhhccc-----
Confidence 345689999999999984 899999999999 5688888 88888888 3554 9999999999999999999
Q ss_pred cCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccc-ccee
Q 005315 270 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI-DKKS 347 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~-~~~~ 347 (702)
.+-+|||.-+|..+.+|....-.. .++|+. |.++|.+++ +..++||+++..+.. ....
T Consensus 81 -----ftakvw~a~tgdelhsf~hkhivk--------------~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ 140 (334)
T KOG0278|consen 81 -----FTAKVWDAVTGDELHSFEHKHIVK--------------AVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS 140 (334)
T ss_pred -----chhhhhhhhhhhhhhhhhhhheee--------------eEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc
Confidence 889999999999999997654433 689999 999999999 999999998865432 2345
Q ss_pred eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccc
Q 005315 348 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 348 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
.|..+|..+.|+..++.|++ ++.++++|+|..
T Consensus 141 ghtg~Ir~v~wc~eD~~iLS-----Sadd~tVRLWD~------------------------------------------- 172 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHEDKCILS-----SADDKTVRLWDH------------------------------------------- 172 (334)
T ss_pred CCCCcceeEEEeccCceEEe-----eccCCceEEEEe-------------------------------------------
Confidence 67788999999888888876 445566554432
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCcee
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQAN 506 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~ 506 (702)
+.. ..+..+.+ +.+|+++-.+++|+++.++.+. .|.+||..+-. +++.+. ...|.
T Consensus 173 ----------rTg-t~v~sL~~---~s~VtSlEvs~dG~ilTia~gs----sV~Fwdaksf~------~lKs~k~P~nV~ 228 (334)
T KOG0278|consen 173 ----------RTG-TEVQSLEF---NSPVTSLEVSQDGRILTIAYGS----SVKFWDAKSFG------LLKSYKMPCNVE 228 (334)
T ss_pred ----------ccC-cEEEEEec---CCCCcceeeccCCCEEEEecCc----eeEEecccccc------ceeeccCccccc
Confidence 211 11233445 7889999999999988776553 69999996533 666655 34689
Q ss_pred EEEEccCCCEEEEEeccCCCceEEEEECCCcceee---ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 507 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA---TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 507 ~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~---~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+.+++|+..++++++. |..++.||..+++-+. .+|.++|.++.|||||...|+||. ||+|+||...
T Consensus 229 SASL~P~k~~fVaGge---d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE-----DGTirlWQt~ 297 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGGE---DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE-----DGTIRLWQTT 297 (334)
T ss_pred cccccCCCceEEecCc---ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC-----CceEEEEEec
Confidence 9999999988888887 9999999999887664 478899999999999999999999 9999999876
No 64
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.8e-23 Score=204.36 Aligned_cols=382 Identities=14% Similarity=0.188 Sum_probs=245.0
Q ss_pred CCceEEEEeCCc-eEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cCCC-e
Q 005315 171 ARDQFVIRSGTD-TEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-V 246 (702)
Q Consensus 171 ~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v 246 (702)
+|.+.++.+.|. .+.++|. .+.+.+..|..|...++|++.+|.-.|+.|++.|- |++|+.++.+.+.+.| +|.. |
T Consensus 65 aRknWiv~GsDD~~IrVfny-nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyV 143 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNY-NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYV 143 (794)
T ss_pred eccceEEEecCCceEEEEec-ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEE
Confidence 455666666554 5558888 68889999999999999999999999999999998 7899999888888888 4555 9
Q ss_pred eEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCC-CCcEE
Q 005315 247 KLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYF 324 (702)
Q Consensus 247 ~~i~fSpd-g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~-dg~~l 324 (702)
.+++|.|. .+.+|+++-| ++|+||.+.+..+..++.+|...+. |+.+-+. |..||
T Consensus 144 Mqv~fnPkD~ntFaS~sLD----------rTVKVWslgs~~~nfTl~gHekGVN-------------~Vdyy~~gdkpyl 200 (794)
T KOG0276|consen 144 MQVAFNPKDPNTFASASLD----------RTVKVWSLGSPHPNFTLEGHEKGVN-------------CVDYYTGGDKPYL 200 (794)
T ss_pred EEEEecCCCccceeeeecc----------ccEEEEEcCCCCCceeeeccccCcc-------------eEEeccCCCcceE
Confidence 99999995 5789999999 9999999999899999999987654 6777662 33599
Q ss_pred EEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccc
Q 005315 325 AKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 403 (702)
Q Consensus 325 a~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 403 (702)
++++ |.+|+|||..+..++.....|..+|..+.|+|.=.+|++ |+.|++++||.-. +.+.....++.-....
T Consensus 201 IsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis-----gsEDGTvriWhs~--Ty~lE~tLn~gleRvW 273 (794)
T KOG0276|consen 201 ISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS-----GSEDGTVRIWNSK--TYKLEKTLNYGLERVW 273 (794)
T ss_pred EecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE-----ecCCccEEEecCc--ceehhhhhhcCCceEE
Confidence 9999 999999999999999999999999999999999999999 8899998887432 2222222222222222
Q ss_pred eeEEccCCCEEEEEEcccccc------------------cccccccEEEEEEecCC----------cceeEEEecCCCCc
Q 005315 404 KMYWQSSGDYLAVKVDRYTKT------------------KKSTYTGFELFRIKERD----------IPIEVLELDNKNDK 455 (702)
Q Consensus 404 ~~~~s~~g~~l~~~~~~~~~~------------------~~~~~~~~~l~~l~~~~----------~~~~~~~l~~h~~~ 455 (702)
+++-.+.+..++++.+.+... .|+..+++.--.++.-+ .|....++..-.-.
T Consensus 274 ~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiy 353 (794)
T KOG0276|consen 274 CIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIY 353 (794)
T ss_pred EEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccc
Confidence 333344555555555544311 11111111111111100 11111112111122
Q ss_pred eeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 456 IIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 456 v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
...++-||+|+++++ ++|| .-.||..- ..+.-.-+....+.|++|....++-.. ++.|.++ .
T Consensus 354 Pq~L~hsPNGrfV~V-cgdG---EyiIyTal---------a~RnK~fG~~~eFvw~~dsne~avRes---~~~vki~--k 415 (794)
T KOG0276|consen 354 PQTLAHSPNGRFVVV-CGDG---EYIIYTAL---------ALRNKAFGSGLEFVWAADSNEFAVRES---NGNVKIF--K 415 (794)
T ss_pred hHHhccCCCCcEEEE-ecCc---cEEEEEee---------ehhhcccccceeEEEcCCCCeEEEEec---CCceEEE--e
Confidence 334678899976555 4566 56666541 111111234566778887666666554 6677776 4
Q ss_pred CcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeeeccccEeeEEEeeCCCCCCChhhH
Q 005315 536 ELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKDHFFQFLWRPRPPSFLTPEKE 610 (702)
Q Consensus 536 ~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~~~~~i~~~~w~p~~~~l~s~~~d 610 (702)
+++...+...... +..--.|.+|...+ ++.+++||.. |.++..... ...++.|+-+|..++.++.+
T Consensus 416 nfke~ksi~~~~~--~e~i~gg~Llg~~s------s~~~~fydW~~~~lVrrI~v-~~k~v~w~d~g~lVai~~d~ 482 (794)
T KOG0276|consen 416 NFKEHKSIRPDMS--AEGIFGGPLLGVRS------SDFLCFYDWESGELVRRIEV-TSKHVYWSDNGELVAIAGDD 482 (794)
T ss_pred cceeccccccccc--eeeecCCceEEEEe------CCeEEEEEcccceEEEEEee-ccceeEEecCCCEEEEEecC
Confidence 4444333222221 11112233333333 3777787755 444444432 34456777777666555443
No 65
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=9.5e-23 Score=199.29 Aligned_cols=417 Identities=13% Similarity=0.167 Sum_probs=279.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEeccCcccccCCCCCCCCCCCCCCCCCccccccccCCCCCceEE
Q 005315 97 KSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFV 176 (702)
Q Consensus 97 ~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (702)
..+|.+-|.|+.......... ..-...|.++|..|+.-.+...+...- +.+..--++|... .++
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~----vD~s~~h~lSVWdWqk~~~~~~vk~sn-----------e~v~~a~FHPtd~-nli 216 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCA----VDDSNPHMLSVWDWQKKAKLGPVKTSN-----------EVVFLATFHPTDP-NLI 216 (626)
T ss_pred ccccceeeeecccCCCceEEE----ecCCCccccchhhchhhhccCcceecc-----------ceEEEEEeccCCC-cEE
Confidence 567888888876432211111 111235788888888777776544221 1222223345444 568
Q ss_pred EEeCCceEEEecCCCCCCC---ccccc-CCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCccee-eeecCC-CeeEE
Q 005315 177 IRSGTDTEVLWNDARHLKP---EPVYK-RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL-MRYAHP-QVKLI 249 (702)
Q Consensus 177 ~~~~~~~~~~w~~~~~~~~---~~~~~-~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~-~~~~~~-~v~~i 249 (702)
+++|.+...+|... .+.. ...|. +.+..|.|++|.++|. ++||..+| |.||+.. +.... ..+.|+ +|.++
T Consensus 217 it~Gk~H~~Fw~~~-~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L 293 (626)
T KOG2106|consen 217 ITCGKGHLYFWTLR-GGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSL 293 (626)
T ss_pred EEeCCceEEEEEcc-CCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceEEeEeeecCCceEEE
Confidence 89999999999763 3322 22343 3457899999999997 56788888 7899987 44332 223455 59999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeec------------cCCCcccccCCC--------------
Q 005315 250 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF------------KGSADEFAVGGT-------------- 303 (702)
Q Consensus 250 ~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~------------~~~~~~~~~~~~-------------- 303 (702)
..-.+|+.| +|+.| ..|..|| ..-+.++.. ........++.+
T Consensus 294 ~~lr~Gtll-SGgKD----------Rki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 294 CMLRDGTLL-SGGKD----------RKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred EEecCccEe-ecCcc----------ceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 999999865 49999 8899998 222222211 111111100000
Q ss_pred ---CCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCc
Q 005315 304 ---GGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA 379 (702)
Q Consensus 304 ---~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~ 379 (702)
.+...-.| .++-.| +...+++++ |+.+.+|+ ..+++..+ ....++.++.|+|.| .+|+ +...+
T Consensus 362 ~~v~gh~delw-gla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~-------Gt~~G 428 (626)
T KOG2106|consen 362 LTVQGHGDELW-GLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAV-------GTATG 428 (626)
T ss_pred EEEEeccccee-eEEcCC-ChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEE-------eeccc
Confidence 00111225 477788 877888888 99999999 44555444 344568899999999 7877 55667
Q ss_pred EEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEE
Q 005315 380 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF 459 (702)
Q Consensus 380 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~ 459 (702)
+..+++..+...+..+.- +.....+.++|+|.+||+++.++. +.||+++..+........ .|..+|+.+
T Consensus 429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~---------iyiy~Vs~~g~~y~r~~k-~~gs~ithL 497 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH---------IYIYRVSANGRKYSRVGK-CSGSPITHL 497 (626)
T ss_pred eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe---------EEEEEECCCCcEEEEeee-ecCceeEEe
Confidence 778888888666655554 555556789999999999999987 899999988776655443 345899999
Q ss_pred EEeeCCcEEEEEEcCCCCCeEEEEEeecccCcC----------ceEEE-EEcC---CCceeEEEEccCCCEEEEEeccCC
Q 005315 460 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG----------RVSKL-TTLK---GKQANALFWSPSGRFIVLAGLKGF 525 (702)
Q Consensus 460 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~----------~~~~~-~~~~---~~~v~~~~~spdg~~l~~~~~~~~ 525 (702)
.||+|+++|.+.+.|- .|-+|....-.... +|..- ..+. +..++.++-|...+.++++..
T Consensus 498 DwS~Ds~~~~~~S~d~---eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd--- 571 (626)
T KOG2106|consen 498 DWSSDSQFLVSNSGDY---EILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDD--- 571 (626)
T ss_pred eecCCCceEEeccCce---EEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcccc---
Confidence 9999999999999988 89999442211100 01110 0111 224666777888888998887
Q ss_pred CceEEEEECCCcce-----eeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 526 NGQLEFYNVDELET-----MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 526 dg~v~i~d~~~~~~-----~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
.|.|++|...-.+. ....|...+++++|+.+...+++.+. |..+..|++
T Consensus 572 ~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~-----D~Si~qW~l 625 (626)
T KOG2106|consen 572 FGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGK-----DTSIMQWRL 625 (626)
T ss_pred CceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCC-----CceEEEEEe
Confidence 89999998763222 23467789999999999888888877 999999986
No 66
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.3e-22 Score=183.87 Aligned_cols=286 Identities=14% Similarity=0.248 Sum_probs=212.0
Q ss_pred CCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCC
Q 005315 193 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNP 269 (702)
Q Consensus 193 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~~i~fSpdg~~l~t~s~d~~~~~ 269 (702)
.++...+......++++.||++|.+|++++.+. ++|||.. ++.++.++++. ++..+.|......++.++..
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk----- 77 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK----- 77 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEeecccccccEEEEecCCceEEEccCC-----
Confidence 445555655667899999999999999988775 8999999 88888888766 79999998888777777762
Q ss_pred cCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceee
Q 005315 270 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 348 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~ 348 (702)
.+.+|+..++.+.+.+|.|.+|...++ .+..+| -+..+.+++ |++|++||++..+.....
T Consensus 78 ---~d~tIryLsl~dNkylRYF~GH~~~V~-------------sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l-- 138 (311)
T KOG1446|consen 78 ---EDDTIRYLSLHDNKYLRYFPGHKKRVN-------------SLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLL-- 138 (311)
T ss_pred ---CCCceEEEEeecCceEEEcCCCCceEE-------------EEEecC-CCCeEEecccCCeEEeeEecCCCCceEE--
Confidence 116899999999999999999999875 789999 888888888 999999999966554322
Q ss_pred ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccc
Q 005315 349 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 428 (702)
Q Consensus 349 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 428 (702)
+..+-...+|.|.|-++|+ +.+.. .|.+|+
T Consensus 139 ~~~~~pi~AfDp~GLifA~-----~~~~~--~IkLyD------------------------------------------- 168 (311)
T KOG1446|consen 139 NLSGRPIAAFDPEGLIFAL-----ANGSE--LIKLYD------------------------------------------- 168 (311)
T ss_pred ecCCCcceeECCCCcEEEE-----ecCCC--eEEEEE-------------------------------------------
Confidence 3333344667777777776 22222 444444
Q ss_pred cccEEEEEEecC-CcceeEEEec-CCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCc--
Q 005315 429 YTGFELFRIKER-DIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-- 504 (702)
Q Consensus 429 ~~~~~l~~l~~~-~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-- 504 (702)
++.- ..|.....+. +.....+.+.|||||++++.+...+ .+++.|.-+|. .+.++..++
T Consensus 169 --------~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf~G~------~~~tfs~~~~~ 231 (311)
T KOG1446|consen 169 --------LRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAFDGT------VKSTFSGYPNA 231 (311)
T ss_pred --------ecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEccCCc------EeeeEeeccCC
Confidence 3321 2233333332 2255678899999999999999888 88888875554 444443321
Q ss_pred ---eeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--c-ccCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 505 ---ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--A-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 505 ---v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~-~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
--..+|+|||+++++++. ||+|.+|+++++..+.. + +.+.++++.|+|.--.+++++. .+.+|-
T Consensus 232 ~~~~~~a~ftPds~Fvl~gs~---dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s-------~l~fw~ 301 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSGSD---DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS-------NLVFWL 301 (311)
T ss_pred CCcceeEEECCCCcEEEEecC---CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc-------eEEEEe
Confidence 246889999999999998 99999999999888765 3 4578889999997666666654 677775
Q ss_pred ec
Q 005315 579 FN 580 (702)
Q Consensus 579 ~~ 580 (702)
..
T Consensus 302 p~ 303 (311)
T KOG1446|consen 302 PD 303 (311)
T ss_pred cc
Confidence 43
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.4e-23 Score=209.86 Aligned_cols=267 Identities=17% Similarity=0.290 Sum_probs=212.9
Q ss_pred ceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec--CC-CeeE
Q 005315 173 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HP-QVKL 248 (702)
Q Consensus 173 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~-~v~~ 248 (702)
..+++.-+. .+.+|+. ..+.......-+...|+++.|+++|++||.|..+| |.|||.. ..+.+..+. |. .|.+
T Consensus 189 n~laValg~-~vylW~~-~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-~~k~~~~~~~~h~~rvg~ 265 (484)
T KOG0305|consen 189 NVLAVALGQ-SVYLWSA-SSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-EQKKTRTLRGSHASRVGS 265 (484)
T ss_pred CeEEEEecc-eEEEEec-CCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehh-hccccccccCCcCceeEE
Confidence 345555444 4459998 45554444455588999999999999999999999 7899998 666665552 44 4999
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEee-ccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe
Q 005315 249 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 327 (702)
Q Consensus 249 i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~ 327 (702)
++|+ +..+.+|+.+ +.|..+|++..+.... +.+|...+. .++|++ |++++|++
T Consensus 266 laW~--~~~lssGsr~----------~~I~~~dvR~~~~~~~~~~~H~qeVC-------------gLkws~-d~~~lASG 319 (484)
T KOG0305|consen 266 LAWN--SSVLSSGSRD----------GKILNHDVRISQHVVSTLQGHRQEVC-------------GLKWSP-DGNQLASG 319 (484)
T ss_pred Eecc--CceEEEecCC----------CcEEEEEEecchhhhhhhhcccceee-------------eeEECC-CCCeeccC
Confidence 9998 7788999999 9999999988876555 777877763 689999 99999999
Q ss_pred c-CCeEEEEecCCcccccceeeccCCeeEEEeCCC-CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccccccee
Q 005315 328 G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKM 405 (702)
Q Consensus 328 ~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 405 (702)
+ |+.+.|||......+.....|...|..++|+|- ..+||+ |++.....|..|+..+...+.... ....+|.+
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs-----GGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL 393 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT-----GGGSADRCIKFWNTNTGARIDSVD-TGSQVCSL 393 (484)
T ss_pred CCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE-----cCCCcccEEEEEEcCCCcEecccc-cCCceeeE
Confidence 9 999999999766666677778889999999996 678888 777777788888887776655443 45567889
Q ss_pred EEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEe
Q 005315 406 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 485 (702)
Q Consensus 406 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 485 (702)
.|++..+-|++...... ..+.||...... ....+.+|...|..++|||||..++++++|. +++||++
T Consensus 394 ~Wsk~~kEi~sthG~s~-------n~i~lw~~ps~~---~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE---Tlrfw~~ 460 (484)
T KOG0305|consen 394 IWSKKYKELLSTHGYSE-------NQITLWKYPSMK---LVAELLGHTSRVLYLALSPDGETIVTGAADE---TLRFWNL 460 (484)
T ss_pred EEcCCCCEEEEecCCCC-------CcEEEEeccccc---eeeeecCCcceeEEEEECCCCCEEEEecccC---cEEeccc
Confidence 99999998888665432 247899887532 2356779999999999999999999999999 9999998
Q ss_pred ec
Q 005315 486 RT 487 (702)
Q Consensus 486 ~~ 487 (702)
-.
T Consensus 461 f~ 462 (484)
T KOG0305|consen 461 FD 462 (484)
T ss_pred cC
Confidence 43
No 68
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=8.2e-23 Score=184.46 Aligned_cols=289 Identities=16% Similarity=0.226 Sum_probs=216.5
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~ 273 (702)
..+++|..+++.+.++.+|.+|.+++.|. ..||-.. +++++.++ +|.+ |.|++.+-+.++|+||+.|
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~-nGerlGty~GHtGavW~~Did~~s~~liTGSAD--------- 73 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-NGERLGTYDGHTGAVWCCDIDWDSKHLITGSAD--------- 73 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEec-CCceeeeecCCCceEEEEEecCCcceeeecccc---------
Confidence 45789999999999999999999999999 5699887 78888888 4655 9999999999999999999
Q ss_pred ccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec------CCeEEEEecCCc-------
Q 005315 274 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG------KNMISVYETESF------- 340 (702)
Q Consensus 274 ~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~------d~~i~v~d~~~~------- 340 (702)
.++++||+.+|+.+.+++.+.... .+.|++ +|++++.+. .+.|.+++++..
T Consensus 74 -~t~kLWDv~tGk~la~~k~~~~Vk--------------~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 74 -QTAKLWDVETGKQLATWKTNSPVK--------------RVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred -ceeEEEEcCCCcEEEEeecCCeeE--------------EEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 899999999999999998765443 579999 999888776 367999998832
Q ss_pred ccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc-eeeeeeecccccceeEEccCCCEEEEEEc
Q 005315 341 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDCKMYWQSSGDYLAVKVD 419 (702)
Q Consensus 341 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 419 (702)
....+...+...+...-|+|-+.+|++ +...+.|..|+..++. .+.....+......+.++++..++++++.
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~-------Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIA-------GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEE-------ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc
Confidence 223233334456899999999999998 4555567778877754 44455556666677788999999999999
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCc------
Q 005315 420 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR------ 493 (702)
Q Consensus 420 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~------ 493 (702)
+.+ -.+|++..-... ..... ..+|++.+++|....++.+++... ..|.-=..+.++...+
T Consensus 211 Dtt---------akl~D~~tl~v~-Kty~t---e~PvN~aaisP~~d~VilgGGqeA-~dVTTT~~r~GKFEArFyh~i~ 276 (327)
T KOG0643|consen 211 DTT---------AKLVDVRTLEVL-KTYTT---ERPVNTAAISPLLDHVILGGGQEA-MDVTTTSTRAGKFEARFYHLIF 276 (327)
T ss_pred Ccc---------ceeeeccceeeE-EEeee---cccccceecccccceEEecCCcee-eeeeeecccccchhhhHHHHHH
Confidence 877 577777643221 11222 679999999998888888776431 0222212222221111
Q ss_pred eEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 494 VSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 494 ~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
.+.+..+.+| +||+++|+|+|+..++|+. ||.|++.-++
T Consensus 277 eEEigrvkGHFGPINsvAfhPdGksYsSGGE---DG~VR~h~Fd 317 (327)
T KOG0643|consen 277 EEEIGRVKGHFGPINSVAFHPDGKSYSSGGE---DGYVRLHHFD 317 (327)
T ss_pred HHHhccccccccCcceeEECCCCcccccCCC---CceEEEEEec
Confidence 1234445555 8999999999999999998 9999987554
No 69
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-22 Score=180.07 Aligned_cols=275 Identities=16% Similarity=0.238 Sum_probs=212.1
Q ss_pred CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005315 195 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRD 271 (702)
Q Consensus 195 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~ 271 (702)
....+..|+..|..+.|+-||+|.++++.+. +++|+.. .+.++.++. |. .|..++.+.|...+++|+.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~-rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD------- 80 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL-RGALIKTYSGHGHEVLDAALSSDNSKFASCGGD------- 80 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccc-ccceeeeecCCCceeeeccccccccccccCCCC-------
Confidence 3456788999999999999999999999998 7899999 899999884 44 39999999999999999999
Q ss_pred CCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccc--cceee
Q 005315 272 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI--DKKSL 348 (702)
Q Consensus 272 ~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~--~~~~~ 348 (702)
..|.+||+.||+.++.|.+|...+. .++|+. +...+++++ |..+++||..+.... ....-
T Consensus 81 ---k~v~vwDV~TGkv~Rr~rgH~aqVN-------------tV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQilde 143 (307)
T KOG0316|consen 81 ---KAVQVWDVNTGKVDRRFRGHLAQVN-------------TVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDE 143 (307)
T ss_pred ---ceEEEEEcccCeeeeecccccceee-------------EEEecC-cceEEEeccccceeEEEEcccCCCCccchhhh
Confidence 8999999999999999999998875 789999 999999999 999999998865432 22222
Q ss_pred ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccc
Q 005315 349 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 428 (702)
Q Consensus 349 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 428 (702)
...+|.++..+ +..|+. |+.|++.+.+
T Consensus 144 a~D~V~Si~v~--~heIva-----GS~DGtvRty---------------------------------------------- 170 (307)
T KOG0316|consen 144 AKDGVSSIDVA--EHEIVA-----GSVDGTVRTY---------------------------------------------- 170 (307)
T ss_pred hcCceeEEEec--ccEEEe-----eccCCcEEEE----------------------------------------------
Confidence 33456665554 233444 5555554433
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCc----
Q 005315 429 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ---- 504 (702)
Q Consensus 429 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~---- 504 (702)
+++...... --+ ..+|++++|+++|+..++++-++ ++++.|-.+++ .+..+.+|.
T Consensus 171 -------diR~G~l~s--Dy~---g~pit~vs~s~d~nc~La~~l~s---tlrLlDk~tGk------lL~sYkGhkn~ey 229 (307)
T KOG0316|consen 171 -------DIRKGTLSS--DYF---GHPITSVSFSKDGNCSLASSLDS---TLRLLDKETGK------LLKSYKGHKNMEY 229 (307)
T ss_pred -------Eeecceeeh--hhc---CCcceeEEecCCCCEEEEeeccc---eeeecccchhH------HHHHhccccccee
Confidence 333211100 012 67999999999999999999999 99999988776 666666663
Q ss_pred eeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeeccc--C-ceeeeEECCCCCEEEEEEeecccccccEEEE
Q 005315 505 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--F-MATDVEWDPTGRYVATAVTSVHEMENGFNIW 577 (702)
Q Consensus 505 v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~--~-~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw 577 (702)
-...+++.....+++++. ||.|++||+....++..... . .++++.+.|.-..++++.. +.+..|
T Consensus 230 kldc~l~qsdthV~sgSE---DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~------~~~~~~ 296 (307)
T KOG0316|consen 230 KLDCCLNQSDTHVFSGSE---DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG------HGDLFW 296 (307)
T ss_pred eeeeeecccceeEEeccC---CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC------Cceece
Confidence 244677777788898888 99999999998887765332 2 3789999998887777776 455555
No 70
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=2.4e-22 Score=203.88 Aligned_cols=388 Identities=12% Similarity=0.222 Sum_probs=254.3
Q ss_pred CceEEEecCCCCCCCcccccCCCcccceEEECCCCc---EEEEEeCCc-eEEeecC-cCcceeeeecCCCeeEEEecCCC
Q 005315 181 TDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGT---YLATVHRQG-AAVWGGA-NTFNRLMRYAHPQVKLIDFSPGE 255 (702)
Q Consensus 181 ~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~---~lat~~~~~-i~iw~~~-~~~~~~~~~~~~~v~~i~fSpdg 255 (702)
...+.+|+. .+......+.||...|+|+.|-|+.+ ++++|+.|+ |++|.+. .....+..+++..+.+++++..-
T Consensus 33 ~~~Iav~dp-~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~ 111 (764)
T KOG1063|consen 33 GPAIAVADP-EKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARS 111 (764)
T ss_pred CceEEEeCc-ccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeee
Confidence 344457776 23334556799999999999999988 899999999 8899887 23445555555445556665433
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEccCCc-------------------------------------------------
Q 005315 256 KYLVTYSSHEPSNPRDANRVVINIFDVRTGK------------------------------------------------- 286 (702)
Q Consensus 256 ~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~------------------------------------------------- 286 (702)
......+.+ +++.+||....+
T Consensus 112 ~~~~~~~ad----------~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f 181 (764)
T KOG1063|consen 112 SVMTCKAAD----------GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF 181 (764)
T ss_pred eEEEeeccC----------ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce
Confidence 322222444 677777763222
Q ss_pred -EEeeccCCCcccccCCCCCCCCcccceEEEcCC--CCcEEEEec-CCeEEEEecCCccc--------------------
Q 005315 287 -VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG--KDKYFAKLG-KNMISVYETESFTL-------------------- 342 (702)
Q Consensus 287 -~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~--dg~~la~~~-d~~i~v~d~~~~~~-------------------- 342 (702)
.+..+.+|.+- ++ .++|+.. +.-+||+++ |..|+||.+.-+..
T Consensus 182 ~~v~el~GH~DW--------Ir-----sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~ 248 (764)
T KOG1063|consen 182 ARVAELEGHTDW--------IR-----SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFM 248 (764)
T ss_pred eEEEEeeccchh--------hh-----hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceee
Confidence 11222233222 23 3344431 455888888 99999998653220
Q ss_pred -ccce----------eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccc-----cceeE
Q 005315 343 -IDKK----------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS-----DCKMY 406 (702)
Q Consensus 343 -~~~~----------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~ 406 (702)
+... ..|..-|.++.|+|.+..|.+ ++.|.+..+|.-+-.++--+....+.... -....
T Consensus 249 ~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS-----ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l 323 (764)
T KOG1063|consen 249 ILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS-----ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL 323 (764)
T ss_pred eeeeEEEEEehhhhhcCcccceEEEEEccchhhhee-----cccCcceEEEecCCccceEEEEEEeecccccccceeeEE
Confidence 0011 123445899999999977776 77899888887666654433333322222 22347
Q ss_pred EccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEE--
Q 005315 407 WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS-- 484 (702)
Q Consensus 407 ~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d-- 484 (702)
|+|++..++..+.. +++++|...++..=.....+.+|.+.|.+++|+|.|.+|++++.|. +-++|-
T Consensus 324 w~~n~~~ii~~g~~---------Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQ---TTRlFa~w 391 (764)
T KOG1063|consen 324 WSPNSNVIIAHGRT---------GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQ---TTRLFARW 391 (764)
T ss_pred EcCCCCEEEEeccc---------CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecccc---ceeeeccc
Confidence 99999877765443 4488998333222222234669999999999999999999998886 333322
Q ss_pred ------------------eecc----------------------------------------------------------
Q 005315 485 ------------------MRTA---------------------------------------------------------- 488 (702)
Q Consensus 485 ------------------~~~~---------------------------------------------------------- 488 (702)
+..-
T Consensus 392 g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn 471 (764)
T KOG1063|consen 392 GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN 471 (764)
T ss_pred ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC
Confidence 1100
Q ss_pred ---------cCcC--ceE---------------------------EEEEcCCC--ceeEEEEccCCCEEEEEeccC--CC
Q 005315 489 ---------QHAG--RVS---------------------------KLTTLKGK--QANALFWSPSGRFIVLAGLKG--FN 526 (702)
Q Consensus 489 ---------~~~~--~~~---------------------------~~~~~~~~--~v~~~~~spdg~~l~~~~~~~--~d 526 (702)
.+.. .+. .++.+-+| .|.+++.||+|+++|+++... ..
T Consensus 472 Ka~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~eh 551 (764)
T KOG1063|consen 472 KAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEH 551 (764)
T ss_pred CCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccc
Confidence 0000 000 00111122 478899999999999988633 34
Q ss_pred ceEEEEECCCcceee--ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEecccee-------eeeccccEeeEEE
Q 005315 527 GQLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL-------YRTLKDHFFQFLW 597 (702)
Q Consensus 527 g~v~i~d~~~~~~~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l-------~~~~~~~i~~~~w 597 (702)
..|++|+..+..... ..|.-.|+.++|||||+||++++. |.++.+|....... .+.|..-|++..|
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-----DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW 626 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-----DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW 626 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-----CceEEeeeeecccchhhhhccccccceEEEEccc
Confidence 579999998765554 477789999999999999999999 99999998753322 2346678999999
Q ss_pred eeCCCCCCChhhHHHHH
Q 005315 598 RPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 598 ~p~~~~l~s~~~d~~i~ 614 (702)
+|++.+++|++.|++++
T Consensus 627 ~pde~~FaTaSRDK~Vk 643 (764)
T KOG1063|consen 627 SPDEKYFATASRDKKVK 643 (764)
T ss_pred CcccceeEEecCCceEE
Confidence 99999999999999886
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=6.5e-24 Score=196.11 Aligned_cols=275 Identities=17% Similarity=0.235 Sum_probs=213.5
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 324 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~l 324 (702)
.+.|..|||||+||++|+.| |-|.|||..+|+..+.++......-+-.... .-|+.||. |...+
T Consensus 215 h~EcA~FSPDgqyLvsgSvD----------GFiEVWny~~GKlrKDLkYQAqd~fMMmd~a-----Vlci~FSR-DsEMl 278 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVD----------GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDA-----VLCISFSR-DSEML 278 (508)
T ss_pred chhheeeCCCCceEeecccc----------ceeeeehhccchhhhhhhhhhhcceeecccc-----eEEEeecc-cHHHh
Confidence 48999999999999999999 9999999999987766654322110000000 11899999 99999
Q ss_pred EEec-CCeEEEEecCCccccccee-eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccccc
Q 005315 325 AKLG-KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 402 (702)
Q Consensus 325 a~~~-d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 402 (702)
|+++ ||.|+||.+.+|.++.++. .|..+|+++.||.|+..+.+ ++.|.+++|.-+.
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS-----~sfD~tvRiHGlK----------------- 336 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILS-----ASFDQTVRIHGLK----------------- 336 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhc-----ccccceEEEeccc-----------------
Confidence 9999 9999999999999998775 68899999999999999888 7777776653211
Q ss_pred ceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEE
Q 005315 403 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 482 (702)
Q Consensus 403 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 482 (702)
.|+. ..++.+|...|+...|+++|+++++++.|+ +|++
T Consensus 337 -------SGK~--------------------------------LKEfrGHsSyvn~a~ft~dG~~iisaSsDg---tvkv 374 (508)
T KOG0275|consen 337 -------SGKC--------------------------------LKEFRGHSSYVNEATFTDDGHHIISASSDG---TVKV 374 (508)
T ss_pred -------cchh--------------------------------HHHhcCccccccceEEcCCCCeEEEecCCc---cEEE
Confidence 1111 124568999999999999999999999999 9999
Q ss_pred EEeecccCcCceEEEEEcC----CCceeEEEEccCC-CEEEEEeccCCCceEEEEECCCcceeee-----cccCceeeeE
Q 005315 483 YSMRTAQHAGRVSKLTTLK----GKQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVE 552 (702)
Q Consensus 483 ~d~~~~~~~~~~~~~~~~~----~~~v~~~~~spdg-~~l~~~~~~~~dg~v~i~d~~~~~~~~~-----~~~~~i~~~~ 552 (702)
|+.+++. ++.++. .-+|+++..-|.. ..++++.. .++|+|.++. |+++.+ .+.+...+..
T Consensus 375 W~~Ktte------C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr---sntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 375 WHGKTTE------CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR---SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred ecCcchh------hhhhccCCCCcccceeEEEcCCCCceEEEEcC---CCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 9997765 444443 2268888777754 46777776 7899999998 445443 2335667889
Q ss_pred ECCCCCEEEEEEeecccccccEEEEEec-cceeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 553 WDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 553 ~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.||.|.++.+.+. |+.++-|++. |.+-... |...+..+.-+|..+.|++-++|+.+|
T Consensus 445 lSpkGewiYcigE-----D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllK 504 (508)
T KOG0275|consen 445 LSPKGEWIYCIGE-----DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLK 504 (508)
T ss_pred ecCCCcEEEEEcc-----CcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhh
Confidence 9999999999999 9999999976 5544433 456677889999999999999998876
No 72
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=7.9e-23 Score=204.69 Aligned_cols=357 Identities=14% Similarity=0.204 Sum_probs=262.9
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~~i~fSpdg~~l~t~s~d~~~~~~~~~ 273 (702)
+.+..|...|.+|.|+|...++.++..+| +.||+.+ +...+..|+.. .|+...|-+--+.+++|+.|
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnye-tqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD--------- 76 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYE-TQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDD--------- 76 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecc-cceeeeeeeecccchhhheeeeccceEEEecCC---------
Confidence 44566888999999999999999999888 8999999 88888888755 48999999999999999999
Q ss_pred ccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCc-ccccceeeccC
Q 005315 274 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF-TLIDKKSLKVE 351 (702)
Q Consensus 274 ~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~-~~~~~~~~~~~ 351 (702)
..|+||+..|++.+..|..|.+-+. +++.+| ..-|+.+++ |-+|++|+-+.. .+...+..|..
T Consensus 77 -~~IrVfnynt~ekV~~FeAH~DyIR-------------~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 77 -MQIRVFNYNTGEKVKTFEAHSDYIR-------------SIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred -ceEEEEecccceeeEEeecccccee-------------eeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence 9999999999999999999988764 889999 999999999 899999998854 34445667777
Q ss_pred CeeEEEeCCC-CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 352 NVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 352 ~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
-|.+++|.|. .+.+|+ ++-|.+++||.+..+.....-......++.+.+.-.++..||++++++.+
T Consensus 142 yVMqv~fnPkD~ntFaS-----~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-------- 208 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFAS-----ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-------- 208 (794)
T ss_pred EEEEEEecCCCccceee-----eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce--------
Confidence 8999999996 467888 88899998887765443221111112333333333445569999999988
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEE
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 510 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 510 (702)
+++|+.+.+.+ ..++.+|...|..+.|+|.-..|++++.|| +|+||+-.+-.. .....+....+.+++-
T Consensus 209 -iKvWDyQtk~C---V~TLeGHt~Nvs~v~fhp~lpiiisgsEDG---TvriWhs~Ty~l----E~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 209 -IKVWDYQTKSC---VQTLEGHTNNVSFVFFHPELPIIISGSEDG---TVRIWNSKTYKL----EKTLNYGLERVWCIAA 277 (794)
T ss_pred -EEEeecchHHH---HHHhhcccccceEEEecCCCcEEEEecCCc---cEEEecCcceeh----hhhhhcCCceEEEEee
Confidence 89999887654 356889999999999999999999999999 999999754321 1222233446788887
Q ss_pred ccCCCEEEEEeccCCCceEE------------------EEECCC------------------cceeee--cccC----ce
Q 005315 511 SPSGRFIVLAGLKGFNGQLE------------------FYNVDE------------------LETMAT--AEHF----MA 548 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~------------------i~d~~~------------------~~~~~~--~~~~----~i 548 (702)
.+.++.+++|.. .|.+. ||...+ ++.+.. .+-+ ..
T Consensus 278 ~k~~~~i~vG~D---eg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyP 354 (794)
T KOG0276|consen 278 HKGDGKIAVGFD---EGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYP 354 (794)
T ss_pred cCCCCeEEEecc---CCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccch
Confidence 777777777654 33322 232211 111110 0000 11
Q ss_pred eeeEECCCCCEEEEEEeecccccccEEEEEeccceeeeeccccEeeEEEeeCCCCCCChhhHHHH
Q 005315 549 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 549 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~~~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
..++-||+||+++.|+. |.+.||..- -++....+.-..+.|.+++...+.-...+.|
T Consensus 355 q~L~hsPNGrfV~Vcgd------GEyiIyTal--a~RnK~fG~~~eFvw~~dsne~avRes~~~v 411 (794)
T KOG0276|consen 355 QTLAHSPNGRFVVVCGD------GEYIIYTAL--ALRNKAFGSGLEFVWAADSNEFAVRESNGNV 411 (794)
T ss_pred HHhccCCCCcEEEEecC------ccEEEEEee--ehhhcccccceeEEEcCCCCeEEEEecCCce
Confidence 25788999999888875 899999732 1234455777889999997766655444444
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.3e-23 Score=199.61 Aligned_cols=277 Identities=13% Similarity=0.185 Sum_probs=219.1
Q ss_pred CCCcccceEEECCCCc-EEEEEeCCceEEeecCcCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005315 201 RSYWTESFVQWSPLGT-YLATVHRQGAAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 277 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~-~lat~~~~~i~iw~~~~~~~~~~~~~--~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i 277 (702)
....+|++++|||.-- -+|+++.-++.||+.. +......+. ...|.++.|-.||+.||.|... |.|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~-~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~s----------G~V 92 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSV-TRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDES----------GHV 92 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecc-hhhhhhhHHhhccceeEEEeecCCeEEEccCCc----------CcE
Confidence 3456899999999654 4888888889999998 666666553 3459999999999999999998 999
Q ss_pred EEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEE
Q 005315 278 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDF 356 (702)
Q Consensus 278 ~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 356 (702)
+|||..+...++.+..|..++. ...|+|+++..+++++ |+.+++||+.+.........|...|.+.
T Consensus 93 ~vfD~k~r~iLR~~~ah~apv~-------------~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 93 KVFDMKSRVILRQLYAHQAPVH-------------VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred EEeccccHHHHHHHhhccCcee-------------EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 9999877778999999988764 6799995666778888 8889999999887655566788889999
Q ss_pred EeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEE
Q 005315 357 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFR 436 (702)
Q Consensus 357 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~ 436 (702)
+|+|....+++. ||-|+.+++|.
T Consensus 160 ~~~~~~~hivvt----GsYDg~vrl~D----------------------------------------------------- 182 (487)
T KOG0310|consen 160 DISPANDHIVVT----GSYDGKVRLWD----------------------------------------------------- 182 (487)
T ss_pred ccccCCCeEEEe----cCCCceEEEEE-----------------------------------------------------
Confidence 999986644431 66666655443
Q ss_pred EecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCC
Q 005315 437 IKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG 514 (702)
Q Consensus 437 l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg 514 (702)
++..+. ...++ +|..+|.++.+-|.|..||++++. .|++||+-++.. .+..+. .+.|+|+++..++
T Consensus 183 tR~~~~--~v~el-nhg~pVe~vl~lpsgs~iasAgGn----~vkVWDl~~G~q-----ll~~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 183 TRSLTS--RVVEL-NHGCPVESVLALPSGSLIASAGGN----SVKVWDLTTGGQ-----LLTSMFNHNKTVTCLRLASDS 250 (487)
T ss_pred eccCCc--eeEEe-cCCCceeeEEEcCCCCEEEEcCCC----eEEEEEecCCce-----ehhhhhcccceEEEEEeecCC
Confidence 332221 22344 779999999999999999998774 699999975542 333333 4479999999999
Q ss_pred CEEEEEeccCCCceEEEEECCCcceeeecc-cCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 515 RFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 515 ~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~-~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
+.|++++. |+.+++||+.+.+++..-. .++|.+++.+|+++.++.|-. +|.+.+=+
T Consensus 251 ~rLlS~sL---D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGms-----nGlv~~rr 307 (487)
T KOG0310|consen 251 TRLLSGSL---DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMS-----NGLVSIRR 307 (487)
T ss_pred ceEeeccc---ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecc-----cceeeeeh
Confidence 99999999 9999999999999888744 488999999999999999988 66666553
No 74
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=1.7e-22 Score=231.72 Aligned_cols=287 Identities=12% Similarity=0.230 Sum_probs=206.1
Q ss_pred Cc-eEEeecCcCcceeeee------cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--------E
Q 005315 224 QG-AAVWGGANTFNRLMRY------AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--------V 287 (702)
Q Consensus 224 ~~-i~iw~~~~~~~~~~~~------~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~--------~ 287 (702)
.| .++|+.. .......+ .|. .|.+++|+|+|++||+++.| +.|+||++.+.. .
T Consensus 457 ~gl~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D----------~~I~iwd~~~~~~~~~~~~~~ 525 (793)
T PLN00181 457 EGLCKYLSFS-KLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVN----------KKIKIFECESIIKDGRDIHYP 525 (793)
T ss_pred hhhhhhhccc-ceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCC----------CEEEEEECCcccccccccccc
Confidence 44 4577766 44433222 134 39999999999999999999 999999975321 1
Q ss_pred EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCC-CCCeE
Q 005315 288 MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSP-TDPII 365 (702)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l 365 (702)
...+.++. .+ ..+.|++.++.+||+++ |++|++||+.+++.+.....|...|.+++|+| ++.+|
T Consensus 526 ~~~~~~~~-~v-------------~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 526 VVELASRS-KL-------------SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred eEEecccC-ce-------------eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence 11122111 11 16788762477899988 99999999998887777767888899999997 67888
Q ss_pred EEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCccee
Q 005315 366 SLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIE 445 (702)
Q Consensus 366 a~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 445 (702)
++ ++.|+.+++|.+. +... +
T Consensus 592 ~S-----gs~Dg~v~iWd~~--~~~~----------------------~------------------------------- 611 (793)
T PLN00181 592 AS-----GSDDGSVKLWSIN--QGVS----------------------I------------------------------- 611 (793)
T ss_pred EE-----EcCCCEEEEEECC--CCcE----------------------E-------------------------------
Confidence 88 7777766655432 1110 0
Q ss_pred EEEecCCCCceeEEEEe-eCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEEEEccCCCEEEEEec
Q 005315 446 VLELDNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 446 ~~~l~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~ 522 (702)
..+. +...+.++.|+ ++|.+|++++.|+ .|++||++.... .+..+.+ ..|.++.|+ ++.+|++++.
T Consensus 612 -~~~~-~~~~v~~v~~~~~~g~~latgs~dg---~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 612 -GTIK-TKANICCVQFPSESGRSLAFGSADH---KVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred -EEEe-cCCCeEEEEEeCCCCCEEEEEeCCC---eEEEEECCCCCc-----cceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence 0011 13467788885 5799999999999 999999975432 2333333 368999997 7889999988
Q ss_pred cCCCceEEEEECCCc------ceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc-eee--------
Q 005315 523 KGFNGQLEFYNVDEL------ETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLY-------- 585 (702)
Q Consensus 523 ~~~dg~v~i~d~~~~------~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~l~-------- 585 (702)
|+.|++||+... ..+.+ .|...++.++|+|+|++|++++. |+.+++|+.... .+.
T Consensus 681 ---D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~-----D~~v~iw~~~~~~~~~s~~~~~~~ 752 (793)
T PLN00181 681 ---DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE-----TNEVFVYHKAFPMPVLSYKFKTID 752 (793)
T ss_pred ---CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-----CCEEEEEECCCCCceEEEecccCC
Confidence 999999999742 33332 55677889999999999999999 999999996522 110
Q ss_pred -------eeccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 586 -------RTLKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 586 -------~~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
..+...|.+++|+|++..|++++.++.|+
T Consensus 753 ~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 753 PVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred cccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 11224589999999999999999888775
No 75
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=6.1e-23 Score=192.92 Aligned_cols=277 Identities=14% Similarity=0.283 Sum_probs=207.0
Q ss_pred ccccCCCcccceEEECCCC-cEEEEEeCCc-eEEeecCcCcceeeeec-CCC-eeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005315 197 PVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDA 272 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~ 272 (702)
..+.+|...|.|++=+|.. ..+|+|+.|| |.|||+. ...++.+|. |.+ |..|+++. ..+++++.|
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdD-------- 128 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS-QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDD-------- 128 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehh-hhhhhheeecccCceeeEEecc--cceEEecCC--------
Confidence 3468999999999999987 7899999999 8899999 888887773 555 99999987 678899999
Q ss_pred CccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCC
Q 005315 273 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVEN 352 (702)
Q Consensus 273 ~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~ 352 (702)
.+|+.|.+ .|.+++++.+..... | +.-+. .+..+|+++ ..|.|||......+.......+.
T Consensus 129 --KtvK~wk~-~~~p~~tilg~s~~~---------g-----Idh~~-~~~~FaTcG-e~i~IWD~~R~~Pv~smswG~Dt 189 (433)
T KOG0268|consen 129 --KTVKQWKI-DGPPLHTILGKSVYL---------G-----IDHHR-KNSVFATCG-EQIDIWDEQRDNPVSSMSWGADS 189 (433)
T ss_pred --cceeeeec-cCCcceeeecccccc---------c-----ccccc-ccccccccC-ceeeecccccCCccceeecCCCc
Confidence 89999996 556677776544322 2 22223 455677666 46899999877777767677777
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccE
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 432 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 432 (702)
+.++.|+|....|+.. ++.|+. |.+|
T Consensus 190 i~svkfNpvETsILas----~~sDrs--IvLy------------------------------------------------ 215 (433)
T KOG0268|consen 190 ISSVKFNPVETSILAS----CASDRS--IVLY------------------------------------------------ 215 (433)
T ss_pred eeEEecCCCcchheee----eccCCc--eEEE------------------------------------------------
Confidence 8888888875444321 223332 3333
Q ss_pred EEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEE
Q 005315 433 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFW 510 (702)
Q Consensus 433 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~ 510 (702)
+++.. .|+..+.+ ...-+.++|+|.+-.|.++..|. +++.||++.... ++....+| .+.++.|
T Consensus 216 ---D~R~~-~Pl~KVi~---~mRTN~IswnPeafnF~~a~ED~---nlY~~DmR~l~~-----p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 216 ---DLRQA-SPLKKVIL---TMRTNTICWNPEAFNFVAANEDH---NLYTYDMRNLSR-----PLNVHKDHVSAVMDVDF 280 (433)
T ss_pred ---ecccC-Cccceeee---eccccceecCccccceeeccccc---cceehhhhhhcc-----cchhhcccceeEEEecc
Confidence 33321 22333334 45566799999888888888888 999999976543 44444444 6899999
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCCcceeeecc---cCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~---~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
||.|+-+++|+. |.+|+||..+.+......| -..|.++.||.|.+||++||. |+.|++|...
T Consensus 281 sptG~Efvsgsy---DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd-----d~nvRlWka~ 345 (433)
T KOG0268|consen 281 SPTGQEFVSGSY---DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD-----DGNVRLWKAK 345 (433)
T ss_pred CCCcchhccccc---cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC-----Ccceeeeecc
Confidence 999999999999 9999999998665544333 367899999999999999999 9999999864
No 76
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.5e-22 Score=196.18 Aligned_cols=315 Identities=16% Similarity=0.274 Sum_probs=220.5
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
-+.+.|||-|.||+|.... | |.+|--.+-..++.|.++... .+.||| +.+||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~----------G-I~lWGG~~f~r~~RF~Hp~Vq---------------~idfSP-~EkYLV 265 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ----------G-IALWGGESFDRIQRFYHPGVQ---------------FIDFSP-NEKYLV 265 (698)
T ss_pred eeeEEecCCceEEEEEecc----------c-eeeecCccHHHHHhccCCCce---------------eeecCC-ccceEE
Confidence 5789999999999999988 5 789987777777777655433 579999 999999
Q ss_pred Eec---C---------CeEEEEecCCcccccceeeccC---CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 326 KLG---K---------NMISVYETESFTLIDKKSLKVE---NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 326 ~~~---d---------~~i~v~d~~~~~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
+-+ . ..+.|||+.+|.+......... .-.-+.||.|++++|..+. -.|.+|+.++..
T Consensus 266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~--------~sisIyEtpsf~ 337 (698)
T KOG2314|consen 266 TYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG--------NSISIYETPSFM 337 (698)
T ss_pred EecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc--------ceEEEEecCcee
Confidence 876 1 5799999999988766544212 2345799999999997422 348889999988
Q ss_pred eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEE
Q 005315 391 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 470 (702)
Q Consensus 391 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 470 (702)
.+..+.+.......+.|+|.+..||+.+.... .....+.|..+..+.. +....+ |+-.=..+.|..+|.+||+
T Consensus 338 lld~Kslki~gIr~FswsP~~~llAYwtpe~~----~~parvtL~evPs~~~-iRt~nl--fnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 338 LLDKKSLKISGIRDFSWSPTSNLLAYWTPETN----NIPARVTLMEVPSKRE-IRTKNL--FNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred eecccccCCccccCcccCCCcceEEEEccccc----CCcceEEEEecCccce-eeeccc--eeeeccEEEeccCCcEEEE
Confidence 88877777777778899999999999776432 1112233444332211 111111 1222234789999999998
Q ss_pred EEcCCC-------CCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCC----cc
Q 005315 471 IHGDSP-------RPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE----LE 538 (702)
Q Consensus 471 ~~~d~~-------~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~----~~ 538 (702)
-....+ ..++.|+.++.... ++..+. ...+-.++|-|.|..+++.+......++.+|.+++ .+
T Consensus 411 kvdR~tK~~~~g~f~n~eIfrireKdI-----pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 411 KVDRHTKSKVKGQFSNLEIFRIREKDI-----PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred EEEeeccccccceEeeEEEEEeeccCC-----CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 765321 23567777765543 344443 33688999999998887766433467899998873 33
Q ss_pred eeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc-ceeee--eccccEeeEEEeeCCCCCCChhh
Q 005315 539 TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYR--TLKDHFFQFLWRPRPPSFLTPEK 609 (702)
Q Consensus 539 ~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~l~~--~~~~~i~~~~w~p~~~~l~s~~~ 609 (702)
++.......++.+.|||.|++++.+... ++.+.+.++|.+- ..... ...-..+.+.|.|.|++++|++.
T Consensus 486 lVk~~dk~~~N~vfwsPkG~fvvva~l~--s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 486 LVKELDKKFANTVFWSPKGRFVVVAALV--SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred hhhhhcccccceEEEcCCCcEEEEEEec--ccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 4455666778899999999999988763 2368899998773 22222 22345678999999999998763
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=200.96 Aligned_cols=284 Identities=14% Similarity=0.198 Sum_probs=210.1
Q ss_pred CCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc--eeeeec--CCCeeEEEecCCCCEEEEEcCCCCCC
Q 005315 194 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSN 268 (702)
Q Consensus 194 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~--~~~v~~i~fSpdg~~l~t~s~d~~~~ 268 (702)
.....+..|.+.+..+.|-++...|++|+.+. |.+|+.. ..+ .+..+. ..+|+.+.|-++++++++.+.|
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~-~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d---- 240 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVL-GEKSELISTLAGSLGNITSIDFDSDNKHVIAASND---- 240 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcc-cchhhhhhhhhccCCCcceeeecCCCceEEeecCC----
Confidence 34456678999999999999989999999998 7799988 333 334442 3359999999999999999999
Q ss_pred CcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccccee
Q 005315 269 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 347 (702)
Q Consensus 269 ~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~ 347 (702)
+.+++|++.+++...++.+|.+.++ ++.|.. ....+++++ |.+|++||+....+....
T Consensus 241 ------~~~r~Wnvd~~r~~~TLsGHtdkVt-------------~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~- 299 (459)
T KOG0288|consen 241 ------KNLRLWNVDSLRLRHTLSGHTDKVT-------------AAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTV- 299 (459)
T ss_pred ------Cceeeeeccchhhhhhhccccccee-------------eehhhc-cccceeeccccchhhhhhhhhhheeccc-
Confidence 8999999999999999999998875 667776 666688888 999999999975554322
Q ss_pred eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccc
Q 005315 348 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 348 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
+....+.++..+ ...+++ +..|+.
T Consensus 300 l~~S~cnDI~~~--~~~~~S-----gH~Dkk------------------------------------------------- 323 (459)
T KOG0288|consen 300 LPGSQCNDIVCS--ISDVIS-----GHFDKK------------------------------------------------- 323 (459)
T ss_pred cccccccceEec--ceeeee-----cccccc-------------------------------------------------
Confidence 333334444443 122222 223333
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeE
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANA 507 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~ 507 (702)
+++|+++.... ...+.+ .+.|+++..+++|..+.+++.|. ++.+.|+++......+.......++..+.
T Consensus 324 ----vRfwD~Rs~~~-~~sv~~---gg~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 324 ----VRFWDIRSADK-TRSVPL---GGRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred ----eEEEeccCCce-eeEeec---CcceeeEeeccCCeEEeeecCCC---ceeeeecccccEEEEeeccccccccccce
Confidence 34444433221 112333 56999999999999999998888 89999997654221111111112345788
Q ss_pred EEEccCCCEEEEEeccCCCceEEEEECCCcceeee--c--ccCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 508 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--A--EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 508 ~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~--~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
+.|||+|.|+++|+. ||.|+||++.++++... . .+..|++++|+|.|.+|++++. +..+.+|.
T Consensus 393 vvfSpd~~YvaAGS~---dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk-----~~~v~lW~ 459 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGSA---DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK-----QKAVTLWT 459 (459)
T ss_pred eEECCCCceeeeccC---CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC-----CcceEecC
Confidence 999999999999998 99999999999887654 2 2236999999999999999999 88999983
No 78
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.2e-22 Score=194.95 Aligned_cols=286 Identities=14% Similarity=0.214 Sum_probs=216.5
Q ss_pred CCcccceEEECCCCcEEEEEeCCc-eEEeecCcCc-ceeeeecCC--CeeEEEecCCCC-EEEEEcCCCCCCCcCCCccE
Q 005315 202 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF-NRLMRYAHP--QVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVV 276 (702)
Q Consensus 202 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~-~~~~~~~~~--~v~~i~fSpdg~-~l~t~s~d~~~~~~~~~~~~ 276 (702)
....|++|+|+|.-..|.+++.++ ++||.+++.. ..+..++.. .|.+..|+|+|. .+++++.. ..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr----------ky 281 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR----------KY 281 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccc----------eE
Confidence 357899999999999999999999 7899776332 344444433 499999999999 78888887 78
Q ss_pred EEEEEccCCcEEe--eccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCe
Q 005315 277 INIFDVRTGKVMR--DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENV 353 (702)
Q Consensus 277 i~vwd~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v 353 (702)
++.||+.+++..+ ...++... ++. .+..|| ++++||..+ .|.|.+....++.++....+ .+.|
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~----------~~e--~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v 347 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEK----------SME--RFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVV 347 (514)
T ss_pred EEEeeccccccccccCCCCcccc----------hhh--eeEecC-CCCeEEEcccCceEEeehhhhhhhhheeee-ccEE
Confidence 9999998887533 23333211 122 688899 999999999 99999999999988865532 2348
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEE
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 433 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 433 (702)
.++.|+.+++.|.. + ++.+.||.|++.....+. .|.-+|.
T Consensus 348 ~~~~fsSdsk~l~~-----~--~~~GeV~v~nl~~~~~~~------------rf~D~G~--------------------- 387 (514)
T KOG2055|consen 348 SDFTFSSDSKELLA-----S--GGTGEVYVWNLRQNSCLH------------RFVDDGS--------------------- 387 (514)
T ss_pred eeEEEecCCcEEEE-----E--cCCceEEEEecCCcceEE------------EEeecCc---------------------
Confidence 99999999998887 3 344488888876543222 1222221
Q ss_pred EEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEEEEc
Q 005315 434 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWS 511 (702)
Q Consensus 434 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~s 511 (702)
-.-++++.|++|.+||+|+..| -|.|||..+.......+++.++.. ..|+++.|+
T Consensus 388 --------------------v~gts~~~S~ng~ylA~GS~~G---iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 388 --------------------VHGTSLCISLNGSYLATGSDSG---IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred --------------------cceeeeeecCCCceEEeccCcc---eEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 1224577889999999999999 999999765443344456666553 368999999
Q ss_pred cCCCEEEEEeccCCCceEEEEECCCcceeee-----cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 512 PSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 512 pdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-----~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
||++.|+.++... ...+++..+.++.+... ..-+.++|++|||.|.|+|.|.. ++.+.+|.+.
T Consensus 445 ~d~qiLAiaS~~~-knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe-----~grv~l~kL~ 512 (514)
T KOG2055|consen 445 HDAQILAIASRVK-KNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE-----AGRVHLFKLH 512 (514)
T ss_pred cchhhhhhhhhcc-ccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC-----CCceeeEeec
Confidence 9999999998655 78999999998777654 23367899999999999999999 8999999864
No 79
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.1e-23 Score=213.98 Aligned_cols=246 Identities=17% Similarity=0.266 Sum_probs=179.6
Q ss_pred cc-CCCcccceEEECCCCcEEEEEeCCc-eEEeecCc------------------------------C-c----------
Q 005315 199 YK-RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN------------------------------T-F---------- 235 (702)
Q Consensus 199 ~~-~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~------------------------------~-~---------- 235 (702)
++ .|.+.|+++.||+||+|||+|+.|+ |+||.+.. . .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 35 8999999999999999999999999 67997652 0 0
Q ss_pred ------------------ceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCC
Q 005315 236 ------------------NRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA 295 (702)
Q Consensus 236 ------------------~~~~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~ 295 (702)
++++.| +|. .|..|.||.+ .+|++++.| .+|++|++....+++.|....
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMD----------KTVRLWh~~~~~CL~~F~Hnd 410 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMD----------KTVRLWHPGRKECLKVFSHND 410 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEecccc----------ccEEeecCCCcceeeEEecCC
Confidence 001111 133 4899999975 589999999 999999999999999997654
Q ss_pred cccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCC
Q 005315 296 DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG 374 (702)
Q Consensus 296 ~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~ 374 (702)
- ++ |++|+|.|++||++|+ |+.|+||++...+++.-..++ .-|+.++|+|+|+..++ |+
T Consensus 411 f-VT-------------cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avI-----Gt 470 (712)
T KOG0283|consen 411 F-VT-------------CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVI-----GT 470 (712)
T ss_pred e-eE-------------EEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEE-----EE
Confidence 4 33 9999998889999999 999999999988776544333 45899999999999998 66
Q ss_pred CCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC
Q 005315 375 GNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND 454 (702)
Q Consensus 375 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~ 454 (702)
-++.++++. ....+ +... ..|-.-+.+ .. .|.
T Consensus 471 ~~G~C~fY~--t~~lk-----------------------~~~~--------------~~I~~~~~K-------k~-~~~- 502 (712)
T KOG0283|consen 471 FNGYCRFYD--TEGLK-----------------------LVSD--------------FHIRLHNKK-------KK-QGK- 502 (712)
T ss_pred eccEEEEEE--ccCCe-----------------------EEEe--------------eeEeeccCc-------cc-cCc-
Confidence 666655433 21111 1000 011100000 01 123
Q ss_pred ceeEEEEee-CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC----ceeEEEEccCCCEEEEEeccCCCceE
Q 005315 455 KIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK----QANALFWSPSGRFIVLAGLKGFNGQL 529 (702)
Q Consensus 455 ~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~~~~dg~v 529 (702)
.|+.+.+.| +...+++.+.|. .|+|||.++.. ++..+.+. .-....|+.||++|++++. |..|
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDS---rIRI~d~~~~~------lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se---Ds~V 570 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDS---RIRIYDGRDKD------LVHKFKGFRNTSSQISASFSSDGKHIVSASE---DSWV 570 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCC---ceEEEeccchh------hhhhhcccccCCcceeeeEccCCCEEEEeec---CceE
Confidence 899999987 445688888998 99999996544 44444432 3356789999999999998 9999
Q ss_pred EEEECC
Q 005315 530 EFYNVD 535 (702)
Q Consensus 530 ~i~d~~ 535 (702)
++|++.
T Consensus 571 YiW~~~ 576 (712)
T KOG0283|consen 571 YIWKND 576 (712)
T ss_pred EEEeCC
Confidence 999985
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.2e-21 Score=190.17 Aligned_cols=271 Identities=13% Similarity=0.210 Sum_probs=210.2
Q ss_pred cccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCccee----ee----------------ecCCCeeEEEecCC
Q 005315 196 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL----MR----------------YAHPQVKLIDFSPG 254 (702)
Q Consensus 196 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~----~~----------------~~~~~v~~i~fSpd 254 (702)
...+..|+-++.||++|||++++.+++.++ |.=|++. ++... .+ .|...+.+++.|||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~-tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVL-TGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehh-cCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 455678999999999999999999999999 7788876 44321 11 11223899999999
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEE
Q 005315 255 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMIS 333 (702)
Q Consensus 255 g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~ 333 (702)
|+|||+|+.+ ..|.||+..+++.++.|.+|.+.+. +++|-. ...-+.+++ |..|+
T Consensus 214 gkylatgg~d----------~~v~Iw~~~t~ehv~~~~ghr~~V~-------------~L~fr~-gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 214 GKYLATGGRD----------RHVQIWDCDTLEHVKVFKGHRGAVS-------------SLAFRK-GTSELYSASADRSVK 269 (479)
T ss_pred CcEEEecCCC----------ceEEEecCcccchhhccccccccee-------------eeeeec-CccceeeeecCCceE
Confidence 9999999999 8999999999999999999998874 677776 444555555 99999
Q ss_pred EEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCE
Q 005315 334 VYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY 413 (702)
Q Consensus 334 v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 413 (702)
+|++..+..+.....|...|.++.-..-++.+.+ |+.|.+.++|.+. . ...
T Consensus 270 vw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV-----GgrDrT~rlwKi~--e----------------------esq 320 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV-----GGRDRTVRLWKIP--E----------------------ESQ 320 (479)
T ss_pred EEehhHhHHHHHHhCCccceeeechhcccceEEe-----ccccceeEEEecc--c----------------------cce
Confidence 9999999888888889999999988888888877 7788887776541 1 001
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCc
Q 005315 414 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR 493 (702)
Q Consensus 414 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 493 (702)
+.+.+|.+.+-|++|- +...|++|+.+| .|.+|++...+
T Consensus 321 ---------------------------------lifrg~~~sidcv~~I-n~~HfvsGSdnG---~IaLWs~~KKk---- 359 (479)
T KOG0299|consen 321 ---------------------------------LIFRGGEGSIDCVAFI-NDEHFVSGSDNG---SIALWSLLKKK---- 359 (479)
T ss_pred ---------------------------------eeeeCCCCCeeeEEEe-cccceeeccCCc---eEEEeeecccC----
Confidence 1122456677778776 556799999999 99999997654
Q ss_pred eEEEEEcC-------CC-------ceeEEEEccCCCEEEEEeccCCCceEEEEECCCc----ceeeec-ccCceeeeEEC
Q 005315 494 VSKLTTLK-------GK-------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL----ETMATA-EHFMATDVEWD 554 (702)
Q Consensus 494 ~~~~~~~~-------~~-------~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~----~~~~~~-~~~~i~~~~~s 554 (702)
++.+.. .. .|++++..|....+++++. +|.|++|-+..+ .++... -.+-|++++|+
T Consensus 360 --plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~---~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~ 434 (479)
T KOG0299|consen 360 --PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW---SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFS 434 (479)
T ss_pred --ceeEeeccccccCCccccccccceeeeEecccCceEEecCC---CCceEEEEecCCccccceeeecccccEEEEEEEc
Confidence 222211 11 5789999999999999998 999999999865 333332 34778999999
Q ss_pred CCCCEEEEEEee
Q 005315 555 PTGRYVATAVTS 566 (702)
Q Consensus 555 pdg~~l~t~s~~ 566 (702)
++|++|+++...
T Consensus 435 ~sgk~ivagiGk 446 (479)
T KOG0299|consen 435 NSGKRIVAGIGK 446 (479)
T ss_pred cCCCEEEEeccc
Confidence 999988888763
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.7e-21 Score=176.04 Aligned_cols=264 Identities=17% Similarity=0.249 Sum_probs=202.4
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
..|.++.||++|.+|++++.| .+++|||..+|+.++++..++-.+. .++|.. ....
T Consensus 15 ~~i~sl~fs~~G~~litss~d----------Dsl~LYd~~~g~~~~ti~skkyG~~-------------~~~Fth-~~~~ 70 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSED----------DSLRLYDSLSGKQVKTINSKKYGVD-------------LACFTH-HSNT 70 (311)
T ss_pred CceeEEEecCCCCEEEEecCC----------CeEEEEEcCCCceeeEeeccccccc-------------EEEEec-CCce
Confidence 359999999999999999988 7999999999999999987754432 567776 4444
Q ss_pred -EEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc
Q 005315 324 -FAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 400 (702)
Q Consensus 324 -la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 400 (702)
+.+.. |.+|+..++.+.+.++-...|...|.+++.+|-+..+++ ++.|.++++|.+..+..+.
T Consensus 71 ~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS-----~S~D~tvrLWDlR~~~cqg--------- 136 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLS-----SSLDKTVRLWDLRVKKCQG--------- 136 (311)
T ss_pred EEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEe-----cccCCeEEeeEecCCCCce---------
Confidence 44444 899999999999999888899999999999999888887 7777777766554322110
Q ss_pred ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeE
Q 005315 401 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 480 (702)
Q Consensus 401 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 480 (702)
+ +. ...-..+++.|.|-.||++.+.. .|
T Consensus 137 ---------------------------------~------------l~----~~~~pi~AfDp~GLifA~~~~~~---~I 164 (311)
T KOG1446|consen 137 ---------------------------------L------------LN----LSGRPIAAFDPEGLIFALANGSE---LI 164 (311)
T ss_pred ---------------------------------E------------Ee----cCCCcceeECCCCcEEEEecCCC---eE
Confidence 0 00 11223468899999999998876 89
Q ss_pred EEEEeecccCcCceEEEEEcC-----CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeeccc----C-ceee
Q 005315 481 SFYSMRTAQHAGRVSKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH----F-MATD 550 (702)
Q Consensus 481 ~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~----~-~i~~ 550 (702)
++||++.-... +..++. ....+.+.|||||++|++++. .+.+++.|.-+|.++.+... . --..
T Consensus 165 kLyD~Rs~dkg----PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 165 KLYDLRSFDKG----PFTTFSITDNDEAEWTDLEFSPDGKSILLSTN---ASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred EEEEecccCCC----CceeEccCCCCccceeeeEEcCCCCEEEEEeC---CCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 99999865322 333332 235789999999999999987 88999999988887765322 1 1247
Q ss_pred eEECCCCCEEEEEEeecccccccEEEEEec-cceeeee---ccccEeeEEEeeCCCCCCChhh
Q 005315 551 VEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT---LKDHFFQFLWRPRPPSFLTPEK 609 (702)
Q Consensus 551 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~---~~~~i~~~~w~p~~~~l~s~~~ 609 (702)
..|+|||++|++++. |+.+.+|++. |..+... +..++.++.|.|.-..++|++.
T Consensus 238 a~ftPds~Fvl~gs~-----dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSD-----DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred EEECCCCcEEEEecC-----CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 899999999999999 9999999987 5544433 4578888999999888888763
No 82
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-20 Score=195.39 Aligned_cols=388 Identities=13% Similarity=0.201 Sum_probs=284.1
Q ss_pred eCCceEEEecCCCCCCCc----ccccCCCcccceEEECCCC--cEEEEEeCCc-eEEeecCcCcceeeeecCC--CeeEE
Q 005315 179 SGTDTEVLWNDARHLKPE----PVYKRSYWTESFVQWSPLG--TYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVKLI 249 (702)
Q Consensus 179 ~~~~~~~~w~~~~~~~~~----~~~~~~~~~v~~v~~Spdg--~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~~i 249 (702)
.-++...+|+......+. ..++.....++++ ++|.- +.++.|+.+| +.||++. +++.+.+|.+- .|+++
T Consensus 131 d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvr-t~K~v~~f~~~~s~IT~i 208 (910)
T KOG1539|consen 131 DISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVR-TGKVVYTFQEFFSRITAI 208 (910)
T ss_pred EccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEec-cCcEEEEecccccceeEe
Confidence 345666689873321221 1112222225544 35542 3467778888 9999999 99999999643 59999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-
Q 005315 250 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 328 (702)
Q Consensus 250 ~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~- 328 (702)
.=+|-=..+|.|..+ |+|.|++++.++.+.+|+...+.++ .++|.- ||..+...+
T Consensus 209 eqsPaLDVVaiG~~~----------G~ViifNlK~dkil~sFk~d~g~Vt-------------slSFrt-DG~p~las~~ 264 (910)
T KOG1539|consen 209 EQSPALDVVAIGLEN----------GTVIIFNLKFDKILMSFKQDWGRVT-------------SLSFRT-DGNPLLASGR 264 (910)
T ss_pred ccCCcceEEEEeccC----------ceEEEEEcccCcEEEEEEcccccee-------------EEEecc-CCCeeEEecc
Confidence 999999999999999 9999999999999999998766664 789999 998665544
Q ss_pred -CCeEEEEecCCccccccee-eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc--ceeeeeeecccccce
Q 005315 329 -KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKNLFSVSDCK 404 (702)
Q Consensus 329 -d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~ 404 (702)
.|.+.+||++..+++.... .|.++|....|.|....+++ .+.|+..++|+++.+.+ +.++....+......
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~t-----a~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ 339 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVT-----AGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC 339 (910)
T ss_pred CCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEee-----ccCCCceeEEEeeCCCCcchheeeccCCCCCchh
Confidence 6999999999887776544 67788999999999999998 88999999999997665 455655555555555
Q ss_pred eEEc-cCCCEEEEEEccccccccc-----------------------cc-------------------------------
Q 005315 405 MYWQ-SSGDYLAVKVDRYTKTKKS-----------------------TY------------------------------- 429 (702)
Q Consensus 405 ~~~s-~~g~~l~~~~~~~~~~~~~-----------------------~~------------------------------- 429 (702)
+.+. .+|.++..+..|.+-...+ ..
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence 5444 5666666665554210000 00
Q ss_pred --ccEEEEEEecCCcceeEEE---ecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc----
Q 005315 430 --TGFELFRIKERDIPIEVLE---LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL---- 500 (702)
Q Consensus 430 --~~~~l~~l~~~~~~~~~~~---l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---- 500 (702)
.....|+++.+......+. +..-...+++++.+++|++.+.|+..| .|.+|++.++-. ..++
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G---~Id~fNmQSGi~------r~sf~~~~ 490 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG---TIDRFNMQSGIH------RKSFGDSP 490 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC---eEEEEEcccCee------ecccccCc
Confidence 0112333333222111111 111136788999999999999998888 999999987653 3333
Q ss_pred -CCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc-cCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 501 -KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 501 -~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~-~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
+..+|..++...-++.+++++. +|.+.+||+.+..++.+.. ...++.+..+.....++.+.. |-.|+++|
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~---~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d-----df~I~vvD 562 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGA---DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD-----DFSIRVVD 562 (910)
T ss_pred cccCceeEEEecCCCceEEEccC---cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC-----ceeEEEEE
Confidence 3457999999999999999998 9999999999877666533 357788888888888999988 89999999
Q ss_pred eccceeeee---ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 579 FNGKLLYRT---LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 579 ~~g~~l~~~---~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
...+.+... |.++++++.|||+|++|++++.|.+||
T Consensus 563 ~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 563 VVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred chhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence 886655433 779999999999999999999998886
No 83
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=4.4e-20 Score=188.35 Aligned_cols=282 Identities=13% Similarity=0.163 Sum_probs=191.1
Q ss_pred CcEEEEEeCCc-eEEeecCcCcceeeeec-CCCeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCcEEeec
Q 005315 215 GTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 291 (702)
Q Consensus 215 g~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~fSpdg~~l-~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~ 291 (702)
+..+++++.++ +.+||.. +.+.+..+. +..+.+++|+|+|+++ ++++.+ +.|++||+.+++.+..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~-t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~----------~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTA-TLEVTRTFPVGQRPRGITLSKDGKLLYVCASDS----------DTIQVIDLATGEVIGTL 69 (300)
T ss_pred CcEEEEecCCCEEEEEECC-CCceEEEEECCCCCCceEECCCCCEEEEEECCC----------CeEEEEECCCCcEEEec
Confidence 35678888888 8899998 777777665 4458889999999987 455666 78999999999888777
Q ss_pred cCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe-c-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEe
Q 005315 292 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFV 369 (702)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~-~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 369 (702)
..+.... .+.|+| ++++++.+ . ++.|.+||+.+.+.+..... ...+.+++|+|+|.++++
T Consensus 70 ~~~~~~~--------------~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~-- 131 (300)
T TIGR03866 70 PSGPDPE--------------LFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVN-- 131 (300)
T ss_pred cCCCCcc--------------EEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEE--
Confidence 6544333 578999 99877554 4 89999999987665543321 123577889999888876
Q ss_pred ecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005315 370 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 449 (702)
Q Consensus 370 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 449 (702)
++.+.. .+..++..+.+.. .....
T Consensus 132 ---~~~~~~-~~~~~d~~~~~~~----------------------------------------------------~~~~~ 155 (300)
T TIGR03866 132 ---TSETTN-MAHFIDTKTYEIV----------------------------------------------------DNVLV 155 (300)
T ss_pred ---EecCCC-eEEEEeCCCCeEE----------------------------------------------------EEEEc
Confidence 322221 1222222111000 00001
Q ss_pred cCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcC--C-------CceeEEEEccCCCEEEE
Q 005315 450 DNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK--G-------KQANALFWSPSGRFIVL 519 (702)
Q Consensus 450 ~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~-------~~v~~~~~spdg~~l~~ 519 (702)
...+.+++|+|+|++|++++. ++ .|.+||+.++. .+..+. . .....++|+|+|+++++
T Consensus 156 ---~~~~~~~~~s~dg~~l~~~~~~~~---~v~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 156 ---DQRPRFAEFTADGKELWVSSEIGG---TVSVIDVATRK------VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred ---CCCccEEEECCCCCEEEEEcCCCC---EEEEEEcCcce------eeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 234467899999998876654 56 89999997654 222221 0 12346899999998766
Q ss_pred EeccCCCceEEEEECCCcceeee-cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccce-eeeec-cccEeeEE
Q 005315 520 AGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL-LYRTL-KDHFFQFL 596 (702)
Q Consensus 520 ~~~~~~dg~v~i~d~~~~~~~~~-~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~-l~~~~-~~~i~~~~ 596 (702)
+..+ ++.+.+||+.+++.+.. .+...+.+++|+|+|++|++++.. ++.+.+||+.+.. +.... ....+.++
T Consensus 224 ~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~----~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 297 (300)
T TIGR03866 224 ALGP--ANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV----SNDVSVIDVAALKVIKSIKVGRLPWGVV 297 (300)
T ss_pred EcCC--CCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC----CCeEEEEECCCCcEEEEEEcccccceeE
Confidence 5421 56899999998887654 344578899999999999887532 7999999998543 33332 24567777
Q ss_pred Eee
Q 005315 597 WRP 599 (702)
Q Consensus 597 w~p 599 (702)
++|
T Consensus 298 ~~~ 300 (300)
T TIGR03866 298 VRP 300 (300)
T ss_pred eCC
Confidence 665
No 84
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=6.4e-21 Score=180.56 Aligned_cols=273 Identities=14% Similarity=0.279 Sum_probs=205.0
Q ss_pred ccccCCCCCceEEEEeC-CceEEEecCCCCCCCcccccCCCcccceEEECCCC---cEEEEEeCCc-eEEeecCcCcce-
Q 005315 164 KWLTDEKARDQFVIRSG-TDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLG---TYLATVHRQG-AAVWGGANTFNR- 237 (702)
Q Consensus 164 ~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg---~~lat~~~~~-i~iw~~~~~~~~- 237 (702)
+|...-++...+++++. ++..++|+. .++....+.+|..++..++|--.. ..+++++.|. +.+|..+ ....
T Consensus 106 DWVSsv~~~~~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~-~~~~~ 182 (423)
T KOG0313|consen 106 DWVSSVKGASKWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN-VGENK 182 (423)
T ss_pred hhhhhhcccCceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec-Cchhh
Confidence 68877777777766654 788889998 688899999999999988885333 3599999998 7798766 3332
Q ss_pred -----eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-------------------------CCcE
Q 005315 238 -----LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-------------------------TGKV 287 (702)
Q Consensus 238 -----~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~-------------------------~g~~ 287 (702)
.++-|...|.+++..++|..+++|+.| .+|.||+.. ++.+
T Consensus 183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D----------~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD----------TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred hhHHhHhcccccceeEEEecCCCCeEEeeccc----------ceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence 222233459999999999999999999 899999931 1224
Q ss_pred EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEE
Q 005315 288 MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIIS 366 (702)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la 366 (702)
+-++.+|...+. .+.|++ . ..+.+++ |.+|++||+.+++..... .....+.+++.+|..++|+
T Consensus 253 ~vtl~GHt~~Vs-------------~V~w~d-~-~v~yS~SwDHTIk~WDletg~~~~~~-~~~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 253 LVTLEGHTEPVS-------------SVVWSD-A-TVIYSVSWDHTIKVWDLETGGLKSTL-TTNKSLNCISYSPLSKLLA 316 (423)
T ss_pred eEEeccccccee-------------eEEEcC-C-CceEeecccceEEEEEeecccceeee-ecCcceeEeecccccceee
Confidence 556667766654 678876 4 4566666 999999999999877554 3334588999999888888
Q ss_pred EEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005315 367 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 446 (702)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 446 (702)
+ |+.+...++|. -+..+..+..
T Consensus 317 ~-----gssdr~irl~D-----------------------------------------------------PR~~~gs~v~ 338 (423)
T KOG0313|consen 317 S-----GSSDRHIRLWD-----------------------------------------------------PRTGDGSVVS 338 (423)
T ss_pred e-----cCCCCceeecC-----------------------------------------------------CCCCCCceeE
Confidence 8 66666555432 2222223334
Q ss_pred EEecCCCCceeEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEecc
Q 005315 447 LELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLK 523 (702)
Q Consensus 447 ~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~ 523 (702)
..+.+|...|.++.|+|.. ..|++++.|+ ++++||+++... ++..+.+| .+.++.|+. |.+|++|+.
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~---t~klWDvRS~k~-----plydI~~h~DKvl~vdW~~-~~~IvSGGa- 408 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDN---TVKLWDVRSTKA-----PLYDIAGHNDKVLSVDWNE-GGLIVSGGA- 408 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEecCC---eEEEEEeccCCC-----cceeeccCCceEEEEeccC-CceEEeccC-
Confidence 5677999999999999954 5677888899 999999987665 67777766 688999984 568999988
Q ss_pred CCCceEEEEECC
Q 005315 524 GFNGQLEFYNVD 535 (702)
Q Consensus 524 ~~dg~v~i~d~~ 535 (702)
|.+|+|+.-.
T Consensus 409 --D~~l~i~~~~ 418 (423)
T KOG0313|consen 409 --DNKLRIFKGS 418 (423)
T ss_pred --cceEEEeccc
Confidence 9999998654
No 85
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=2.7e-21 Score=183.11 Aligned_cols=300 Identities=15% Similarity=0.276 Sum_probs=219.4
Q ss_pred CcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccc
Q 005315 234 TFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 312 (702)
Q Consensus 234 ~~~~~~~~~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~ 312 (702)
..+.+..+.|++ |.++... +++|+||+.| |.++|||. .|+....+.+|.+.+.
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYD----------g~~riWd~-~Gk~~~~~~Ght~~ik------------- 148 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYD----------GTSRIWDL-KGKSIKTIVGHTGPIK------------- 148 (423)
T ss_pred CCCccccccchhhhhhhccc--CceEEEeecC----------CeeEEEec-CCceEEEEecCCccee-------------
Confidence 344555555665 8888887 7899999999 99999994 8999999999988762
Q ss_pred eEEEcCCC--CcEEEEec-CCeEEEEecCCcccc----cceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEe
Q 005315 313 VFRWGGGK--DKYFAKLG-KNMISVYETESFTLI----DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 385 (702)
Q Consensus 313 ~~~~s~~d--g~~la~~~-d~~i~v~d~~~~~~~----~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 385 (702)
.+.|--.+ ...|++++ |.++.+|..+.+... .....|...|.+++..++|..+++ ++.|..++||...
T Consensus 149 ~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~S-----gS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 149 SVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCS-----GSWDTMLKIWSVE 223 (423)
T ss_pred eeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEe-----ecccceeeecccC
Confidence 23443202 23577777 999999998866532 233478888999999999999999 8899999988732
Q ss_pred cCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC
Q 005315 386 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG 465 (702)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g 465 (702)
......+-... . .+ .+.. -.....+.....+.+.+|..+|.++.|++ .
T Consensus 224 ~~~~~~~E~~s------------~---------~r-rk~~---------~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~ 271 (423)
T KOG0313|consen 224 TDEEDELESSS------------N---------RR-RKKQ---------KREKEGGTRTPLVTLEGHTEPVSSVVWSD-A 271 (423)
T ss_pred CCccccccccc------------h---------hh-hhhh---------hhhhcccccCceEEecccccceeeEEEcC-C
Confidence 21111110000 0 00 0000 00001122234467889999999999998 6
Q ss_pred cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc-CCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCc--ceee-
Q 005315 466 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL--ETMA- 541 (702)
Q Consensus 466 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~--~~~~- 541 (702)
..+++++.|. +|+.||+.++. ...++ .+...+++..+|..++|++++. |..+++||.+++ ..+.
T Consensus 272 ~v~yS~SwDH---TIk~WDletg~------~~~~~~~~ksl~~i~~~~~~~Ll~~gss---dr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 272 TVIYSVSWDH---TIKVWDLETGG------LKSTLTTNKSLNCISYSPLSKLLASGSS---DRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred CceEeecccc---eEEEEEeeccc------ceeeeecCcceeEeecccccceeeecCC---CCceeecCCCCCCCceeEE
Confidence 6788888899 99999998876 33333 3567899999999999999998 999999999853 3332
Q ss_pred --ecccCceeeeEECCCCCE-EEEEEeecccccccEEEEEecc--ceeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 542 --TAEHFMATDVEWDPTGRY-VATAVTSVHEMENGFNIWSFNG--KLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 542 --~~~~~~i~~~~~spdg~~-l~t~s~~~~~~d~~v~iw~~~g--~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.+|...|..+.|+|...| |++++. ||++++||+.. ..++.. |.+.+.++.|. .+..|+|++.|.+|+
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S~-----D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGSY-----DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEec-----CCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence 377789999999998875 566666 99999999873 256655 56899999998 456899999998876
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.3e-20 Score=162.66 Aligned_cols=274 Identities=16% Similarity=0.291 Sum_probs=198.5
Q ss_pred eeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc------CCc---------EEeeccCCCccccc
Q 005315 237 RLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR------TGK---------VMRDFKGSADEFAV 300 (702)
Q Consensus 237 ~~~~~~-~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~------~g~---------~~~~~~~~~~~~~~ 300 (702)
.+..+. ...|.+++|+|.|...++|+.. .+++|--.. .+- ..+..+.|.+.+
T Consensus 25 ~i~~l~dsqairav~fhp~g~lyavgsns----------kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsi-- 92 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGGLYAVGSNS----------KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSI-- 92 (350)
T ss_pred EEEEecchhheeeEEecCCCceEEeccCC----------ceEEEEccccccCcccccccccCCCeEEeeeccccCccE--
Confidence 333443 3359999999999999999988 677765432 111 112233444443
Q ss_pred CCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecC--Cccccc---ceeeccCCeeEEEeCCC----CCeEEEEee
Q 005315 301 GGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE--SFTLID---KKSLKVENVMDFSWSPT----DPIISLFVP 370 (702)
Q Consensus 301 ~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~--~~~~~~---~~~~~~~~v~~~~~sp~----~~~la~~~~ 370 (702)
+ |.+||| +|.+||+++ |.+|++.-.+ +.+... .+..|.+.|.+++|-.+ +.+|+.
T Consensus 93 ----------y-c~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s--- 157 (350)
T KOG0641|consen 93 ----------Y-CTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS--- 157 (350)
T ss_pred ----------E-EEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe---
Confidence 2 899999 999999999 9999986544 333222 23456777899988544 445553
Q ss_pred cCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005315 371 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 450 (702)
Q Consensus 371 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 450 (702)
++.+..+|++-+...++.+ ..+.
T Consensus 158 ---~gagdc~iy~tdc~~g~~~------------------------------------------------------~a~s 180 (350)
T KOG0641|consen 158 ---AGAGDCKIYITDCGRGQGF------------------------------------------------------HALS 180 (350)
T ss_pred ---cCCCcceEEEeecCCCCcc------------------------------------------------------eeec
Confidence 3445556665544332211 2234
Q ss_pred CCCCceeEE-EEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC---------CCceeEEEEccCCCEEEEE
Q 005315 451 NKNDKIIAF-AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---------GKQANALFWSPSGRFIVLA 520 (702)
Q Consensus 451 ~h~~~v~~~-~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---------~~~v~~~~~spdg~~l~~~ 520 (702)
+|.+.|.++ .| +|-.|++++.|. +|++||++-.. .+.++. ...|.+++..|.|++|+++
T Consensus 181 ghtghilalysw--n~~m~~sgsqdk---tirfwdlrv~~------~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 181 GHTGHILALYSW--NGAMFASGSQDK---TIRFWDLRVNS------CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred CCcccEEEEEEe--cCcEEEccCCCc---eEEEEeeeccc------eeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 677777765 55 578899999999 99999997543 333332 1358899999999999999
Q ss_pred eccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceee-------eecccc
Q 005315 521 GLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY-------RTLKDH 591 (702)
Q Consensus 521 ~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~-------~~~~~~ 591 (702)
-. |....+||+..++.+.. .|...|.++.|||...|+++++. |..|++-|++|.+.. ..|++.
T Consensus 250 ~~---dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy-----d~~ikltdlqgdla~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 250 HA---DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY-----DMKIKLTDLQGDLAHELPIMVVAEHKDK 321 (350)
T ss_pred cC---CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc-----cceEEEeecccchhhcCceEEEEeccCc
Confidence 88 99999999999988876 45588999999999999999999 999999999987544 337789
Q ss_pred EeeEEEeeCCCCCCChhhHHHH
Q 005315 592 FFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 592 i~~~~w~p~~~~l~s~~~d~~i 613 (702)
+.++.|+|+.-.+++.+.|++.
T Consensus 322 ~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred eEEEEecCccceeeeccCcceE
Confidence 9999999999888888877654
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=1.9e-22 Score=180.30 Aligned_cols=270 Identities=14% Similarity=0.234 Sum_probs=216.7
Q ss_pred cCCCeeEEEecC---CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcC
Q 005315 242 AHPQVKLIDFSP---GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 318 (702)
Q Consensus 242 ~~~~v~~i~fSp---dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~ 318 (702)
|...|-.++||| +|-+|++++.| +.-.+-+-.||.-+-+|.+|++.+ |. .....
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd----------~~pmlr~g~tgdwigtfeghkgav------------w~-~~l~~ 69 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKD----------GKPMLRNGDTGDWIGTFEGHKGAV------------WS-ATLNK 69 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccC----------CCchhccCCCCCcEEeeeccCcce------------ee-eecCc
Confidence 344589999985 89999999999 666677778999999999999887 74 45555
Q ss_pred CCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee
Q 005315 319 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 397 (702)
Q Consensus 319 ~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 397 (702)
+....|+++ |-+-+|||.-++..+..+ .|..-|..++|+.|.++|++ |+.+.-.+|
T Consensus 70 -na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~llt-----gg~ekllrv---------------- 126 (334)
T KOG0278|consen 70 -NATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLT-----GGQEKLLRV---------------- 126 (334)
T ss_pred -hhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhc-----cchHHHhhh----------------
Confidence 556667777 899999999999877655 34455888899999888887 555444443
Q ss_pred cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCC
Q 005315 398 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 477 (702)
Q Consensus 398 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 477 (702)
|+++....| ..++.+|.+.|..+-|....+.|++.+.|+
T Consensus 127 -------------------------------------fdln~p~Ap--p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~-- 165 (334)
T KOG0278|consen 127 -------------------------------------FDLNRPKAP--PKEISGHTGGIRTVLWCHEDKCILSSADDK-- 165 (334)
T ss_pred -------------------------------------hhccCCCCC--chhhcCCCCcceeEEEeccCceEEeeccCC--
Confidence 333322222 245668899999999999888888888888
Q ss_pred CeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeeccc-CceeeeEECC
Q 005315 478 PDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDP 555 (702)
Q Consensus 478 ~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~-~~i~~~~~sp 555 (702)
+|++||.+++. .+.++. .++++++-.|++|++|.++. .+.|.|||..+..++..... ..|.+.+.+|
T Consensus 166 -tVRLWD~rTgt------~v~sL~~~s~VtSlEvs~dG~ilTia~----gssV~Fwdaksf~~lKs~k~P~nV~SASL~P 234 (334)
T KOG0278|consen 166 -TVRLWDHRTGT------EVQSLEFNSPVTSLEVSQDGRILTIAY----GSSVKFWDAKSFGLLKSYKMPCNVESASLHP 234 (334)
T ss_pred -ceEEEEeccCc------EEEEEecCCCCcceeeccCCCEEEEec----CceeEEeccccccceeeccCccccccccccC
Confidence 99999999876 566655 66899999999999998876 58999999999999887554 6788999999
Q ss_pred CCCEEEEEEeecccccccEEEEEec-cceee---eeccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 556 TGRYVATAVTSVHEMENGFNIWSFN-GKLLY---RTLKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 556 dg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~---~~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
+..++++|+. |..++.||+. |..+- +-|.++|.++.|+|+|...+++++|++||
T Consensus 235 ~k~~fVaGge-----d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 235 KKEFFVAGGE-----DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred CCceEEecCc-----ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEE
Confidence 9999999988 8999999987 44332 44779999999999999999999999997
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.8e-21 Score=189.05 Aligned_cols=267 Identities=14% Similarity=0.212 Sum_probs=205.6
Q ss_pred CCCeeEEEecCCCCE-EEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 243 HPQVKLIDFSPGEKY-LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~-l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
|..|.+++|||...| +|+.+.- .+.||+..+....+++..-...+. ++.|.. ||
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~-----------rvqly~~~~~~~~k~~srFk~~v~-------------s~~fR~-DG 80 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSV-----------RVQLYSSVTRSVRKTFSRFKDVVY-------------SVDFRS-DG 80 (487)
T ss_pred cCcceeEecCCCCCCceEEeccc-----------EEEEEecchhhhhhhHHhhcccee-------------EEEeec-CC
Confidence 556999999997654 4444433 588999888777776665555542 678899 99
Q ss_pred cEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc
Q 005315 322 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 400 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 400 (702)
+++|.|. .|.|+|||..+...+.....|..++..+.|+|.++.+++. |+.+...++|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s----~sDd~v~k~~------------------ 138 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS----GSDDKVVKYW------------------ 138 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe----cCCCceEEEE------------------
Confidence 9999999 9999999987766777777888899999999987766652 4444443333
Q ss_pred ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC-CcEEEEEEcCCCCCe
Q 005315 401 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPD 479 (702)
Q Consensus 401 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~ 479 (702)
++.... .+..+.+|.+.|.+.+|+|. ++.+++|+.|| .
T Consensus 139 -----------------------------------d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg---~ 177 (487)
T KOG0310|consen 139 -----------------------------------DLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGSYDG---K 177 (487)
T ss_pred -----------------------------------EcCCcE---EEEEecCCcceeEeeccccCCCeEEEecCCCc---e
Confidence 332211 13567799999999999995 55788888899 9
Q ss_pred EEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce-eee--cccCceeeeEECC
Q 005315 480 ISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-MAT--AEHFMATDVEWDP 555 (702)
Q Consensus 480 v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~-~~~--~~~~~i~~~~~sp 555 (702)
|++||++.... .+.++. +++|..+.+-|.|..+++++ ...|++||+.+|.. +.. .|+..|||+.+..
T Consensus 178 vrl~DtR~~~~-----~v~elnhg~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 178 VRLWDTRSLTS-----RVVELNHGCPVESVLALPSGSLIASAG----GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred EEEEEeccCCc-----eeEEecCCCceeeEEEcCCCCEEEEcC----CCeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 99999986542 566665 66999999999999999998 57999999995544 332 4889999999999
Q ss_pred CCCEEEEEEeecccccccEEEEEeccc-eeeee-ccccEeeEEEeeCCCCCCChhhHH
Q 005315 556 TGRYVATAVTSVHEMENGFNIWSFNGK-LLYRT-LKDHFFQFLWRPRPPSFLTPEKEE 611 (702)
Q Consensus 556 dg~~l~t~s~~~~~~d~~v~iw~~~g~-~l~~~-~~~~i~~~~w~p~~~~l~s~~~d~ 611 (702)
+++.|++++. |+.+++|++..- .++.. -.++|.+++.+|++..++.|-.++
T Consensus 249 ~~~rLlS~sL-----D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 249 DSTRLLSGSL-----DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred CCceEeeccc-----ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccc
Confidence 9999999999 999999996643 33333 338999999999988777665554
No 89
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-21 Score=179.99 Aligned_cols=273 Identities=14% Similarity=0.242 Sum_probs=195.8
Q ss_pred eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEE
Q 005315 237 RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 316 (702)
Q Consensus 237 ~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 316 (702)
...++.++...|+.||+.|.+||+|..+ |.|.|||..|...-+.+.+|..+++ +++|
T Consensus 17 l~~tld~~~a~~~~Fs~~G~~lAvGc~n----------G~vvI~D~~T~~iar~lsaH~~pi~-------------sl~W 73 (405)
T KOG1273|consen 17 LTHTLDNPLAECCQFSRWGDYLAVGCAN----------GRVVIYDFDTFRIARMLSAHVRPIT-------------SLCW 73 (405)
T ss_pred hceeccCCccceEEeccCcceeeeeccC----------CcEEEEEccccchhhhhhcccccee-------------EEEe
Confidence 3344556668999999999999999999 9999999999998899999988775 8999
Q ss_pred cCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee
Q 005315 317 GGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 395 (702)
Q Consensus 317 s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 395 (702)
|+ ||+.|.+++ |..|.+||+..+.++....+ ..+|....|+|...-.++.++ .+....+..
T Consensus 74 S~-dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~----~~~sp~vi~------------ 135 (405)
T KOG1273|consen 74 SR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATI----MEESPVVID------------ 135 (405)
T ss_pred cC-CCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEE----ecCCcEEEE------------
Confidence 99 999999999 99999999999987755433 345899999997543333211 111112111
Q ss_pred eecccccceeEEccCCCEEEEE-EcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcC
Q 005315 396 NLFSVSDCKMYWQSSGDYLAVK-VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 474 (702)
Q Consensus 396 ~~~~~~~~~~~~s~~g~~l~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 474 (702)
+++ +..-+.. .+++. + +....+..|.+.|+++++|.+.
T Consensus 136 -----------~s~-~~h~~Lp~d~d~d--------------------------l---n~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 136 -----------FSD-PKHSVLPKDDDGD--------------------------L---NSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred -----------ecC-CceeeccCCCccc--------------------------c---ccccccccccCCCCEEEEecCc
Confidence 222 1111111 11100 0 1122223688899999999998
Q ss_pred CCCCeEEEEEeecccCcCceEEEEEcC--C-CceeEEEEccCCCEEEEEeccCCCceEEEEECCCc-------cee--ee
Q 005315 475 SPRPDISFYSMRTAQHAGRVSKLTTLK--G-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL-------ETM--AT 542 (702)
Q Consensus 475 ~~~~~v~i~d~~~~~~~~~~~~~~~~~--~-~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~-------~~~--~~ 542 (702)
| .+.+|+..+.+ .+..+. . ..|.++.++-.|+++++-+. |..|+.|++... +.- ..
T Consensus 175 G---kllv~~a~t~e------~vas~rits~~~IK~I~~s~~g~~liiNts---DRvIR~ye~~di~~~~r~~e~e~~~K 242 (405)
T KOG1273|consen 175 G---KLLVYDAETLE------CVASFRITSVQAIKQIIVSRKGRFLIINTS---DRVIRTYEISDIDDEGRDGEVEPEHK 242 (405)
T ss_pred c---eEEEEecchhe------eeeeeeechheeeeEEEEeccCcEEEEecC---CceEEEEehhhhcccCccCCcChhHH
Confidence 8 89999987653 444333 2 56889999999999999988 999999998731 111 10
Q ss_pred ----cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeeecc---ccEeeEEEeeCCCCCCCh
Q 005315 543 ----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLK---DHFFQFLWRPRPPSFLTP 607 (702)
Q Consensus 543 ----~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~~~---~~i~~~~w~p~~~~l~s~ 607 (702)
.....-.+++||.+|.|++.++.. ...++||.-. |.++...|. ....++.|+|-.+.+++-
T Consensus 243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~----aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 243 LQDVVNKLQWKKCCFSGDGEYVCAGSAR----AHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred HHHHHhhhhhhheeecCCccEEEecccc----ceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 111233478999999999988864 6899999977 666666654 468889999999988876
No 90
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4e-19 Score=180.50 Aligned_cols=430 Identities=15% Similarity=0.161 Sum_probs=265.2
Q ss_pred EEEEEeccCcccccCCCCCCCCCCCCCCCCCccc--cccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCccc
Q 005315 129 IFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENL--QKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTE 206 (702)
Q Consensus 129 ~~~v~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v 206 (702)
.+.+.+-+..-.+.++...|-....-...+.... ..|. +.+| + +-.+.++.+..|+. ...++...+.....++
T Consensus 39 ~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~R-L-FS~g~sg~i~EwDl-~~lk~~~~~d~~gg~I 113 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGR-L-FSSGLSGSITEWDL-HTLKQKYNIDSNGGAI 113 (691)
T ss_pred ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCe-E-EeecCCceEEEEec-ccCceeEEecCCCcce
Confidence 4666666665555555444422221111122222 3455 4344 3 33445677779999 5788888888888999
Q ss_pred ceEEECCCCcEEEEEeCCce-EEeecCcCcceeeee----cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005315 207 SFVQWSPLGTYLATVHRQGA-AVWGGANTFNRLMRY----AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 281 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~~~~i-~iw~~~~~~~~~~~~----~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd 281 (702)
++++.+|.++.++.|+.+|+ ...++. ........ ....|.+++|+|++..|++|+.| |.|++||
T Consensus 114 Wsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D----------g~Iriwd 182 (691)
T KOG2048|consen 114 WSIAINPENTILAIGCDDGVLYDFSIG-PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID----------GVIRIWD 182 (691)
T ss_pred eEEEeCCccceEEeecCCceEEEEecC-CceEEEEeecccccceEEEEEecCCccEEEecccC----------ceEEEEE
Confidence 99999999999999999993 355555 33333222 23459999999999999999999 9999999
Q ss_pred ccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCC
Q 005315 282 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSP 360 (702)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp 360 (702)
+.++..+.......... ..+-..+.|. +.+-. ++ .|+++. .|+|.+||...+.++.....|...|.+++.++
T Consensus 183 ~~~~~t~~~~~~~~d~l----~k~~~~iVWS-v~~Lr-d~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRL----SKREPTIVWS-VLFLR-DS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD 255 (691)
T ss_pred cCCCceEEEeeeccccc----ccCCceEEEE-EEEee-cC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC
Confidence 99998877332222111 0011223364 34434 44 566666 99999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCcEEEEEecCCcc--ee--eeeeecccccceeEEcc-----CCC--EEEEEEcccccc-----
Q 005315 361 TDPIISLFVPELGGGNQPARVSLVQIPSKE--EL--RQKNLFSVSDCKMYWQS-----SGD--YLAVKVDRYTKT----- 424 (702)
Q Consensus 361 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~--~~~~~~~~~~~~~~~s~-----~g~--~l~~~~~~~~~~----- 424 (702)
++..+.+ +|.++. +..|.....+ -+ ....++.-+..+++..+ .|. .|++......+.
T Consensus 256 ~~d~vfs-----aGvd~~--ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~ 328 (691)
T KOG2048|consen 256 NEDRVFS-----AGVDPK--IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQ 328 (691)
T ss_pred CCCeEEE-----ccCCCc--eEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhc
Confidence 9998888 555554 4444332221 01 11111111111111111 111 111111111000
Q ss_pred --------ccc-----------ccccEEEEEEecCC-------cceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCC
Q 005315 425 --------KKS-----------TYTGFELFRIKERD-------IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 478 (702)
Q Consensus 425 --------~~~-----------~~~~~~l~~l~~~~-------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 478 (702)
... ....+.+|++...- .....+.+ .....|.+.+.||+|+++|++.-.
T Consensus 329 ~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~-k~~~nIs~~aiSPdg~~Ia~st~~---- 403 (691)
T KOG2048|consen 329 KNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFT-KEKENISCAAISPDGNLIAISTVS---- 403 (691)
T ss_pred cccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeec-CCccceeeeccCCCCCEEEEeecc----
Confidence 000 01224455554320 01112222 234678899999999999998753
Q ss_pred eEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCc--ceee----ecccCceee
Q 005315 479 DISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL--ETMA----TAEHFMATD 550 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~--~~~~----~~~~~~i~~ 550 (702)
.++||.+.... ..+...+...+ ...+..+.|+-|+..+++++. ....+..+++.+. +.+. +.....|+.
T Consensus 404 ~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~--~~~~le~~el~~ps~kel~~~~~~~~~~~I~~ 480 (691)
T KOG2048|consen 404 RTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSK--NIFSLEEFELETPSFKELKSIQSQAKCPSISR 480 (691)
T ss_pred ceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEec--ccceeEEEEecCcchhhhhccccccCCCccee
Confidence 58899986432 11122222222 225678999999998888872 1788888888742 2222 234578899
Q ss_pred eEECCCCCEEEEEEeecccccccEEEEEeccceeeee---ccccEeeEEEeeCC
Q 005315 551 VEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LKDHFFQFLWRPRP 601 (702)
Q Consensus 551 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~---~~~~i~~~~w~p~~ 601 (702)
+.-||+|+|||+.+. .+.|.+|++.+...... ....++..+++|..
T Consensus 481 l~~SsdG~yiaa~~t-----~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~ 529 (691)
T KOG2048|consen 481 LVVSSDGNYIAAIST-----RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFV 529 (691)
T ss_pred EEEcCCCCEEEEEec-----cceEEEEEcccceeecchhccCcceeeeeccccc
Confidence 999999999999999 89999999987654433 22678888888543
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=181.79 Aligned_cols=285 Identities=14% Similarity=0.247 Sum_probs=222.6
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEc
Q 005315 238 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 317 (702)
Q Consensus 238 ~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s 317 (702)
++....+++..+..+|....+++|+.| ..+.++|..+++.+..|++|...++ .+.++
T Consensus 214 LH~t~~pgi~ald~~~s~~~ilTGG~d----------~~av~~d~~s~q~l~~~~Gh~kki~-------------~v~~~ 270 (506)
T KOG0289|consen 214 LHSTSTPGITALDIIPSSSKILTGGED----------KTAVLFDKPSNQILATLKGHTKKIT-------------SVKFH 270 (506)
T ss_pred eeccCCCCeeEEeecCCCCcceecCCC----------CceEEEecchhhhhhhccCcceEEE-------------EEEec
Confidence 344456679999999988899999999 8899999999999999999988764 67999
Q ss_pred CCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeee
Q 005315 318 GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 396 (702)
Q Consensus 318 ~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 396 (702)
+ +...+++++ |..|+||..+..........|.+.|+.+..+|.|.||+. ++.++... ..++.+...+....
T Consensus 271 ~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYlls-----As~d~~w~--Fsd~~~g~~lt~vs 342 (506)
T KOG0289|consen 271 K-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLS-----ASNDGTWA--FSDISSGSQLTVVS 342 (506)
T ss_pred c-chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEE-----ecCCceEE--EEEccCCcEEEEEe
Confidence 9 998888888 999999999877665556678888999999999999998 55555443 34444554444333
Q ss_pred e--cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcC
Q 005315 397 L--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 474 (702)
Q Consensus 397 ~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 474 (702)
. ..+......|+|||-.+.+++.++. +.+|++.... ....+++|.++|.+++|+-+|-++|+++.|
T Consensus 343 ~~~s~v~~ts~~fHpDgLifgtgt~d~~---------vkiwdlks~~---~~a~Fpght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPDGLIFGTGTPDGV---------VKIWDLKSQT---NVAKFPGHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred eccccceeEEeeEcCCceEEeccCCCce---------EEEEEcCCcc---ccccCCCCCCceeEEEeccCceEEEEEecC
Confidence 2 2344455689999999999998877 8999998765 345688999999999999999999999999
Q ss_pred CCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECC--Ccceeee--cccCceee
Q 005315 475 SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--ELETMAT--AEHFMATD 550 (702)
Q Consensus 475 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~--~~~~~~~--~~~~~i~~ 550 (702)
+ .|++||++.... ++.+..-....++++.|.+.|.+|++++. +=.|++++-. +...+.. .|.+..+.
T Consensus 411 ~---~V~lwDLRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~~k~W~~~~~~~~~sg~st~ 481 (506)
T KOG0289|consen 411 G---SVKLWDLRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGS---DLQVYICKKKTKSWTEIKELADHSGLSTG 481 (506)
T ss_pred C---eEEEEEehhhcc---cceeeccccccceeEEEcCCCCeEEeecc---eeEEEEEecccccceeeehhhhcccccce
Confidence 9 899999976442 11222112346999999999999999976 5566666533 4444543 33457889
Q ss_pred eEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 551 VEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 551 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
+.|....+++++++. |..++++.+
T Consensus 482 v~Fg~~aq~l~s~sm-----d~~l~~~a~ 505 (506)
T KOG0289|consen 482 VRFGEHAQYLASTSM-----DAILRLYAL 505 (506)
T ss_pred eeecccceEEeeccc-----hhheEEeec
Confidence 999999999999999 888888764
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.8e-21 Score=179.20 Aligned_cols=283 Identities=12% Similarity=0.197 Sum_probs=211.2
Q ss_pred cccCCCcccceEEECCCCcEEEEEeCCc-eEEeecC-------------c---Cc-ceeeee-cC-CCeeEEEecCCCCE
Q 005315 198 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA-------------N---TF-NRLMRY-AH-PQVKLIDFSPGEKY 257 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~-------------~---~~-~~~~~~-~~-~~v~~i~fSpdg~~ 257 (702)
.++.|+.++++.+|||||.++|||+.|. |+|.|++ + .. ..+.++ .| ..|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4578999999999999999999999998 8899875 0 00 123333 23 35999999999999
Q ss_pred EEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEe
Q 005315 258 LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYE 336 (702)
Q Consensus 258 l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d 336 (702)
|++++.| ++|++||...-...+.++.-.... ++. ++.|.| .|.||+.+. -.++++||
T Consensus 187 LiS~srD----------~tvKlFDfsK~saKrA~K~~qd~~------~vr-----siSfHP-sGefllvgTdHp~~rlYd 244 (430)
T KOG0640|consen 187 LISGSRD----------NTVKLFDFSKTSAKRAFKVFQDTE------PVR-----SISFHP-SGEFLLVGTDHPTLRLYD 244 (430)
T ss_pred EEeccCC----------CeEEEEecccHHHHHHHHHhhccc------eee-----eEeecC-CCceEEEecCCCceeEEe
Confidence 9999999 999999986544444443322211 011 789999 999999999 68899999
Q ss_pred cCCcccccc---eeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCE
Q 005315 337 TESFTLIDK---KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY 413 (702)
Q Consensus 337 ~~~~~~~~~---~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 413 (702)
+.+.++... ...|.+.|+++.+|+.|++.++ ++.|+.+++| +.-+.+.+....
T Consensus 245 v~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvT-----aSkDG~Iklw--DGVS~rCv~t~~----------------- 300 (430)
T KOG0640|consen 245 VNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVT-----ASKDGAIKLW--DGVSNRCVRTIG----------------- 300 (430)
T ss_pred ccceeEeeecCcccccccceeEEEecCCccEEEE-----eccCCcEEee--ccccHHHHHHHH-----------------
Confidence 998775432 2346678999999999999888 7777776654 332222211100
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-CCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcC
Q 005315 414 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG 492 (702)
Q Consensus 414 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~ 492 (702)
.+| ...|.+..|..+|+++++.+.|. .|++|.+.++.
T Consensus 301 ------------------------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS---~vkLWEi~t~R--- 338 (430)
T KOG0640|consen 301 ------------------------------------NAHGGSEVCSAVFTKNGKYILSSGKDS---TVKLWEISTGR--- 338 (430)
T ss_pred ------------------------------------hhcCCceeeeEEEccCCeEEeecCCcc---eeeeeeecCCc---
Confidence 123 45688899999999999999998 99999997655
Q ss_pred ceEEEEEcCCC-------ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce---eeecccCceeeeEECCCCCEEEE
Q 005315 493 RVSKLTTLKGK-------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDPTGRYVAT 562 (702)
Q Consensus 493 ~~~~~~~~~~~-------~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~---~~~~~~~~i~~~~~spdg~~l~t 562 (702)
.+..+.+. ..+...|+....|+++-.. ..+.+.-||.++... +..+|.+.+..+.-||.+.-+++
T Consensus 339 ---~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE--as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 339 ---MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE--ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred ---eEEEEecCCcccchhhhhhhhhcCccceEEcccc--ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceee
Confidence 44444432 1355678888888877654 257899999986543 45688899999999999999999
Q ss_pred EEeecccccccEEEEE
Q 005315 563 AVTSVHEMENGFNIWS 578 (702)
Q Consensus 563 ~s~~~~~~d~~v~iw~ 578 (702)
|+. |...++|-
T Consensus 414 csd-----D~raRFWy 424 (430)
T KOG0640|consen 414 CSD-----DFRARFWY 424 (430)
T ss_pred ecc-----cceeeeee
Confidence 999 99999995
No 93
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=1.5e-20 Score=199.82 Aligned_cols=251 Identities=14% Similarity=0.192 Sum_probs=167.2
Q ss_pred ceEEEecCCCCCCCcccccCCCcccceEEECCC-CcEEEEEeCCc-eEEeecCcCcc-------eeeee-cCC-CeeEEE
Q 005315 182 DTEVLWNDARHLKPEPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGANTFN-------RLMRY-AHP-QVKLID 250 (702)
Q Consensus 182 ~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~~~-------~~~~~-~~~-~v~~i~ 250 (702)
++..+|+.. ...+...+.+|...|.+++|+|+ +.+||+++.|+ |+||++..... .+..+ .|. .|.+++
T Consensus 54 gvI~L~~~~-r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 54 GAIRLENQM-RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eEEEeeecC-CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 344578773 34566778999999999999997 89999999999 88999872221 12223 243 599999
Q ss_pred ecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-
Q 005315 251 FSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 328 (702)
Q Consensus 251 fSpdg~~l-~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~- 328 (702)
|+|++.++ ++++.| ++|+|||+.+++.+..+..+ ..+. +++|+| +|.+|++++
T Consensus 133 f~P~g~~iLaSgS~D----------gtIrIWDl~tg~~~~~i~~~-~~V~-------------Slswsp-dG~lLat~s~ 187 (568)
T PTZ00420 133 WNPMNYYIMCSSGFD----------SFVNIWDIENEKRAFQINMP-KKLS-------------SLKWNI-KGNLLSGTCV 187 (568)
T ss_pred ECCCCCeEEEEEeCC----------CeEEEEECCCCcEEEEEecC-CcEE-------------EEEECC-CCCEEEEEec
Confidence 99999865 688999 99999999999887777543 2332 789999 999999888
Q ss_pred CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEc
Q 005315 329 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 408 (702)
Q Consensus 329 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 408 (702)
|+.|+|||+.++..+.....|.+.+....+.. ..|+
T Consensus 188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~--------------------------------------------~~fs 223 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWI--------------------------------------------DGLG 223 (568)
T ss_pred CCEEEEEECCCCcEEEEEecccCCceeEEEEe--------------------------------------------eeEc
Confidence 99999999998876654444444322111000 0123
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 409 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
+++.+|++++.+.. ....+.||+++..+.++....+..+.+.+..+..+++|.+|++|.+|+ +|++|++..+
T Consensus 224 ~d~~~IlTtG~d~~-----~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~---tIr~~e~~~~ 295 (568)
T PTZ00420 224 GDDNYILSTGFSKN-----NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG---NCRYYQHSLG 295 (568)
T ss_pred CCCCEEEEEEcCCC-----CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC---eEEEEEccCC
Confidence 44444444332210 001256666665444554445544444444444456789999999999 9999999654
Q ss_pred cCcCceEEEEEcC-CCceeEEEEccCC
Q 005315 489 QHAGRVSKLTTLK-GKQANALFWSPSG 514 (702)
Q Consensus 489 ~~~~~~~~~~~~~-~~~v~~~~~spdg 514 (702)
. +..+..+. ..+...++|.|+-
T Consensus 296 ~----~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 296 S----IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred c----EEeecccccCCCccceEEcccc
Confidence 2 22344333 3367789999964
No 94
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.88 E-value=5.2e-22 Score=185.33 Aligned_cols=265 Identities=12% Similarity=0.238 Sum_probs=208.4
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
.+|+|+.+ |...+++|..| .+|+|||..+-.+++.+.+|.+.+. |+.+ +.+.
T Consensus 198 kgVYClQY--DD~kiVSGlrD----------nTikiWD~n~~~c~~~L~GHtGSVL-------------CLqy---d~rv 249 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRD----------NTIKIWDKNSLECLKILTGHTGSVL-------------CLQY---DERV 249 (499)
T ss_pred CceEEEEe--cchhhhccccc----------CceEEeccccHHHHHhhhcCCCcEE-------------eeec---cceE
Confidence 35999988 66789999999 9999999999999999999998873 5555 7789
Q ss_pred EEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee---eecc
Q 005315 324 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK---NLFS 399 (702)
Q Consensus 324 la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~ 399 (702)
|++++ |.+|+|||..+++++.....|.+.|..+.|+. .++++ ++.|.++.||.+..|+...+... ....
T Consensus 250 iisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvt-----cSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 250 IVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVT-----CSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred EEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEE-----ecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 99998 99999999999999988888889999999975 57777 88999999999988874322211 1112
Q ss_pred cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCe
Q 005315 400 VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD 479 (702)
Q Consensus 400 ~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~ 479 (702)
++.+ .-+.+|+++++.+.+ +++|.+.... ....+.+|...|-++.+ .|+++++|+.|. +
T Consensus 323 VNvV----dfd~kyIVsASgDRT---------ikvW~~st~e---fvRtl~gHkRGIAClQY--r~rlvVSGSSDn---t 381 (499)
T KOG0281|consen 323 VNVV----DFDDKYIVSASGDRT---------IKVWSTSTCE---FVRTLNGHKRGIACLQY--RDRLVVSGSSDN---T 381 (499)
T ss_pred eeee----ccccceEEEecCCce---------EEEEecccee---eehhhhcccccceehhc--cCeEEEecCCCc---e
Confidence 2222 346679999999988 7888876432 22346688988888876 688999999998 9
Q ss_pred EEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce---------ee--ecccC
Q 005315 480 ISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---------MA--TAEHF 546 (702)
Q Consensus 480 v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~---------~~--~~~~~ 546 (702)
|++||+..|. .++.+.+| -|.++.| |.+.+++|+. ||+|++||+..+.. +. ..|.+
T Consensus 382 IRlwdi~~G~------cLRvLeGHEeLvRciRF--d~krIVSGaY---DGkikvWdl~aaldpra~~~~~Cl~~lv~hsg 450 (499)
T KOG0281|consen 382 IRLWDIECGA------CLRVLEGHEELVRCIRF--DNKRIVSGAY---DGKIKVWDLQAALDPRAPASTLCLRTLVEHSG 450 (499)
T ss_pred EEEEeccccH------HHHHHhchHHhhhheee--cCceeeeccc---cceEEEEecccccCCcccccchHHHhhhhccc
Confidence 9999998765 67777777 4788888 4578999998 99999999985321 11 14556
Q ss_pred ceeeeEECCCCCEEEEEEeecccccccEEEEEeccc
Q 005315 547 MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 547 ~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
.|..+.|+ ...|++++. |.+|.|||+...
T Consensus 451 RVFrLQFD--~fqIvsssH-----ddtILiWdFl~~ 479 (499)
T KOG0281|consen 451 RVFRLQFD--EFQIISSSH-----DDTILIWDFLNG 479 (499)
T ss_pred eeEEEeec--ceEEEeccC-----CCeEEEEEcCCC
Confidence 88888885 467888888 899999998643
No 95
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.6e-21 Score=172.04 Aligned_cols=273 Identities=15% Similarity=0.270 Sum_probs=196.5
Q ss_pred ceEEECCC-CcEEEEEe-------CCc-eEEeecC--cCcceeeeec-CCCeeEEEecCC-CCEEEEEcCCCCCCCcCCC
Q 005315 207 SFVQWSPL-GTYLATVH-------RQG-AAVWGGA--NTFNRLMRYA-HPQVKLIDFSPG-EKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 207 ~~v~~Spd-g~~lat~~-------~~~-i~iw~~~--~~~~~~~~~~-~~~v~~i~fSpd-g~~l~t~s~d~~~~~~~~~ 273 (702)
.+++|||- ..+||.+. .+| +.|-+.. ........+. ..++..++||++ ...+++++.|
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD--------- 82 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD--------- 82 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecC---------
Confidence 57899993 23344322 223 5677664 1223334444 345999999997 4788899999
Q ss_pred ccEEEEEEcc-CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccC
Q 005315 274 RVVINIFDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE 351 (702)
Q Consensus 274 ~~~i~vwd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~ 351 (702)
|+++|||+. ...+++.++.|...+. ++.|++.++..+++++ |++|++|+....+-+.....|..
T Consensus 83 -GSLrl~d~~~~s~Pi~~~kEH~~EV~-------------Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 83 -GSLRLFDLTMPSKPIHKFKEHKREVY-------------SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS 148 (311)
T ss_pred -ceEEEeccCCCCcchhHHHhhhhheE-------------EeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc
Confidence 999999963 2357889999988763 6778773445566667 99999999987777766767777
Q ss_pred CeeEEEeCCC-CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 352 NVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 352 ~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
-|....|||. .+.+++ +++|+..++|.++
T Consensus 149 ~Iy~a~~sp~~~nlfas-----~Sgd~~l~lwdvr--------------------------------------------- 178 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFAS-----ASGDGTLRLWDVR--------------------------------------------- 178 (311)
T ss_pred EEEEEecCCCCCCeEEE-----ccCCceEEEEEec---------------------------------------------
Confidence 7888889886 456666 6667666655543
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeE
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANA 507 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~ 507 (702)
..+.+ +.++.|...|.++.|+. +...+++++.|+ .|+.||++.-.. ++..+.+| .|..
T Consensus 179 --------~~gk~---~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~---~vr~wDir~~r~-----pl~eL~gh~~AVRk 239 (311)
T KOG0277|consen 179 --------SPGKF---MSIEAHNSEILCCDWSKYNHNVLATGGVDN---LVRGWDIRNLRT-----PLFELNGHGLAVRK 239 (311)
T ss_pred --------CCCce---eEEEeccceeEeecccccCCcEEEecCCCc---eEEEEehhhccc-----cceeecCCceEEEE
Confidence 32222 22557788999999998 455667777788 999999986553 67777776 6899
Q ss_pred EEEccCC-CEEEEEeccCCCceEEEEECCCcce-ee--ecccCceeeeEECC-CCCEEEEEEeecccccccEEEEEe
Q 005315 508 LFWSPSG-RFIVLAGLKGFNGQLEFYNVDELET-MA--TAEHFMATDVEWDP-TGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 508 ~~~spdg-~~l~~~~~~~~dg~v~i~d~~~~~~-~~--~~~~~~i~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
+.|||.. ..|++++. |-+++|||.....- +. ..|..-+..+.||+ ++.++|+++- |..++||+.
T Consensus 240 vk~Sph~~~lLaSasY---DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gW-----De~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASY---DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGW-----DELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccc---cceEEecccccchhhhhhhhccceEEeccccccccCceeeeccc-----ccceeeecc
Confidence 9999975 46778888 99999999984332 22 24456677899998 5668999999 999999984
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=3.6e-22 Score=187.74 Aligned_cols=259 Identities=14% Similarity=0.215 Sum_probs=189.1
Q ss_pred eEEEcCCCC-cEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 313 VFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 313 ~~~~s~~dg-~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
|++=.| .. ..+|+++ ||.|+|||+....++.....|.+-|.++++.. ..+++ +|.|.+++.|.++.+...
T Consensus 71 ~lakhp-~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~t-----vgdDKtvK~wk~~~~p~~ 142 (433)
T KOG0268|consen 71 CLAKHP-NKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFT-----VGDDKTVKQWKIDGPPLH 142 (433)
T ss_pred hhhcCc-chhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEE-----ecCCcceeeeeccCCcce
Confidence 566677 54 5788888 99999999998888888888888899999987 44555 678999999999886333
Q ss_pred eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCc-EEE
Q 005315 391 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH-RFA 469 (702)
Q Consensus 391 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~ 469 (702)
.+....... .+.-+..+..+++++. .+.||+.... .|+..+.. ..+.|.++.|+|.-. .|+
T Consensus 143 tilg~s~~~----gIdh~~~~~~FaTcGe-----------~i~IWD~~R~-~Pv~smsw--G~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 143 TILGKSVYL----GIDHHRKNSVFATCGE-----------QIDIWDEQRD-NPVSSMSW--GADSISSVKFNPVETSILA 204 (433)
T ss_pred eeecccccc----ccccccccccccccCc-----------eeeecccccC-Cccceeec--CCCceeEEecCCCcchhee
Confidence 222221111 0101112222333222 2788887542 34444444 357799999999654 566
Q ss_pred EEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce---eeeccc
Q 005315 470 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---MATAEH 545 (702)
Q Consensus 470 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~---~~~~~~ 545 (702)
+++.|+ .|.+||++... +++.+. +...+.|+|+|.+-.+++++. |..++.||+..... +...|.
T Consensus 205 s~~sDr---sIvLyD~R~~~------Pl~KVi~~mRTN~IswnPeafnF~~a~E---D~nlY~~DmR~l~~p~~v~~dhv 272 (433)
T KOG0268|consen 205 SCASDR---SIVLYDLRQAS------PLKKVILTMRTNTICWNPEAFNFVAANE---DHNLYTYDMRNLSRPLNVHKDHV 272 (433)
T ss_pred eeccCC---ceEEEecccCC------ccceeeeeccccceecCccccceeeccc---cccceehhhhhhcccchhhcccc
Confidence 666788 89999998765 444433 335689999997766777776 99999999985443 334677
Q ss_pred CceeeeEECCCCCEEEEEEeecccccccEEEEEeccce---e-eeeccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 546 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL---L-YRTLKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 546 ~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~---l-~~~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
..+.+++|||.|+-+++||. |.+|+||...... + ++....++.++.||.|.+++++|++|+.||
T Consensus 273 sAV~dVdfsptG~Efvsgsy-----DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSY-----DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred eeEEEeccCCCcchhccccc-----cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence 88999999999999999999 9999999987432 2 334568999999999999999999999887
No 97
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=173.54 Aligned_cols=280 Identities=16% Similarity=0.176 Sum_probs=180.9
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-----EEeeccCCCcccccCCCCCCCCcccceEEEc
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 317 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s 317 (702)
...|++++||.||++|||++.| ++|+||+++.-. +++....-..+. .+.|+
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~D----------r~Ir~w~~~DF~~~eHr~~R~nve~dhpT--------------~V~Fa 141 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGD----------RSIRLWDVRDFENKEHRCIRQNVEYDHPT--------------RVVFA 141 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCC----------ceEEEEecchhhhhhhhHhhccccCCCce--------------EEEEC
Confidence 3459999999999999999999 999999986532 122111111111 68999
Q ss_pred CCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee
Q 005315 318 GGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 395 (702)
Q Consensus 318 ~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 395 (702)
| |-+-++..- .+.+++|.+...+- .....+.-.+..+.|...
T Consensus 142 p-Dc~s~vv~~~~g~~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~k---------------------------------- 185 (420)
T KOG2096|consen 142 P-DCKSVVVSVKRGNKLCVYKLVKKTD-GSGSHHFVHIDNLEFERK---------------------------------- 185 (420)
T ss_pred C-CcceEEEEEccCCEEEEEEeeeccc-CCCCcccccccccccchh----------------------------------
Confidence 9 887555444 78899997652211 111111111111111111
Q ss_pred eecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCC
Q 005315 396 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 475 (702)
Q Consensus 396 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 475 (702)
+.+....+-...++.+|++++.+.. +.||+++... .. .+......-+..+.||+|+++++++-.-
T Consensus 186 --h~v~~i~iGiA~~~k~imsas~dt~---------i~lw~lkGq~--L~--~idtnq~~n~~aavSP~GRFia~~gFTp 250 (420)
T KOG2096|consen 186 --HQVDIINIGIAGNAKYIMSASLDTK---------ICLWDLKGQL--LQ--SIDTNQSSNYDAAVSPDGRFIAVSGFTP 250 (420)
T ss_pred --cccceEEEeecCCceEEEEecCCCc---------EEEEecCCce--ee--eeccccccccceeeCCCCcEEEEecCCC
Confidence 1111111223455667777766655 6777776321 11 1212234455678999999999887655
Q ss_pred CCCeEEEEEeecc-cCc-CceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECC-------Ccceeeec-
Q 005315 476 PRPDISFYSMRTA-QHA-GRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD-------ELETMATA- 543 (702)
Q Consensus 476 ~~~~v~i~d~~~~-~~~-~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~-------~~~~~~~~- 543 (702)
.|++|.+--+ .+. .....+..+.+| .|..++|||+.+.+++.+. ||.+++||++ ..+++..+
T Consensus 251 ---DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk---DG~wriwdtdVrY~~~qDpk~Lk~g~ 324 (420)
T KOG2096|consen 251 ---DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK---DGKWRIWDTDVRYEAGQDPKILKEGS 324 (420)
T ss_pred ---CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec---CCcEEEeeccceEecCCCchHhhcCC
Confidence 8999998422 111 233456667777 5899999999999999999 9999999987 12222221
Q ss_pred -----ccCceeeeEECCCCCEEEEEEeecccccccEEEEEec-ccee---eeeccccEeeEEEeeCCCCCCChhh
Q 005315 544 -----EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLL---YRTLKDHFFQFLWRPRPPSFLTPEK 609 (702)
Q Consensus 544 -----~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l---~~~~~~~i~~~~w~p~~~~l~s~~~ 609 (702)
..+....++.||.|+.||.+.. ..+++|... |+.. ...|.+.|.+++|+|+|++++|+++
T Consensus 325 ~pl~aag~~p~RL~lsP~g~~lA~s~g------s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 325 APLHAAGSEPVRLELSPSGDSLAVSFG------SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred cchhhcCCCceEEEeCCCCcEEEeecC------CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 1233348999999999998887 688998865 4433 3457799999999999999999875
No 98
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=5.2e-20 Score=187.03 Aligned_cols=370 Identities=18% Similarity=0.219 Sum_probs=235.1
Q ss_pred CCCcccccCCCcccceEEECCCCc---EEEEEeCCc-eEEeecCcCc--------------------cee---e-e----
Q 005315 193 LKPEPVYKRSYWTESFVQWSPLGT---YLATVHRQG-AAVWGGANTF--------------------NRL---M-R---- 240 (702)
Q Consensus 193 ~~~~~~~~~~~~~v~~v~~Spdg~---~lat~~~~~-i~iw~~~~~~--------------------~~~---~-~---- 240 (702)
......+.||..-|.+++|+..|. +||+++.|. |+||.+.-.. ... . +
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 345566799999999999987665 899999998 8899643111 011 0 0
Q ss_pred ---ecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--cEEeeccCCCcccccCCCCCCCCcccceE
Q 005315 241 ---YAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 241 ---~~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 314 (702)
.+|.+ |+++.|+|.+..|++++.| .++.||.-.+. --+...... +.++..+--| ..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaD----------ksmiiW~pd~~tGiWv~~vRlG-------e~gg~a~GF~-g~ 322 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASAD----------KSMIIWKPDENTGIWVDVVRLG-------EVGGSAGGFW-GG 322 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccC----------cceEEEecCCccceEEEEEEee-------ccccccccee-eE
Confidence 13555 9999999999999999999 89999975433 222222111 1111111114 46
Q ss_pred EEcCCCCcEEEEec-CCeEEEEecCCc---ccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecC--C
Q 005315 315 RWGGGKDKYFAKLG-KNMISVYETESF---TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP--S 388 (702)
Q Consensus 315 ~~s~~dg~~la~~~-d~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~--~ 388 (702)
.|+| ++..+++-+ .|..++|..... .+....+.|..+|++++|+|.|.+|.+ .|.|++.|++---.. +
T Consensus 323 lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLs-----vs~DQTTRlFa~wg~q~~ 396 (764)
T KOG1063|consen 323 LWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLS-----VSLDQTTRLFARWGRQQE 396 (764)
T ss_pred EEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEE-----eccccceeeecccccccc
Confidence 8999 999888888 999999983321 233345678999999999999999999 788888887542211 1
Q ss_pred cceeeeeeecccccceeEEccCCCEEEEEEcccc--------------------------------------cccccccc
Q 005315 389 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT--------------------------------------KTKKSTYT 430 (702)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~--------------------------------------~~~~~~~~ 430 (702)
..++.....+.-+-.++.+-+....++.+.+... .+.+..+.
T Consensus 397 wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~ 476 (764)
T KOG1063|consen 397 WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP 476 (764)
T ss_pred eeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence 1122222222111111222221111111111100 00111110
Q ss_pred -----c---EEEEEEecCC-------cc-----------eeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC--CCeEEE
Q 005315 431 -----G---FELFRIKERD-------IP-----------IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP--RPDISF 482 (702)
Q Consensus 431 -----~---~~l~~l~~~~-------~~-----------~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~--~~~v~i 482 (702)
+ ..-+...... .| .+...+.+|...|.+++.+|+|+.+|++..... ...|++
T Consensus 477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~l 556 (764)
T KOG1063|consen 477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRL 556 (764)
T ss_pred cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEE
Confidence 0 0001111000 00 012234589999999999999999999876432 226889
Q ss_pred EEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCccee------eecccCceeeeEEC
Q 005315 483 YSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM------ATAEHFMATDVEWD 554 (702)
Q Consensus 483 ~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~------~~~~~~~i~~~~~s 554 (702)
|+..+-. .+..+.+| .|+.++|||||++|++++. |.++.+|........ ...|..-|.++.|+
T Consensus 557 w~t~~W~------~~~~L~~HsLTVT~l~FSpdg~~LLsvsR---DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~ 627 (764)
T KOG1063|consen 557 WNTANWL------QVQELEGHSLTVTRLAFSPDGRYLLSVSR---DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS 627 (764)
T ss_pred Eeccchh------hhheecccceEEEEEEECCCCcEEEEeec---CceEEeeeeecccchhhhhccccccceEEEEcccC
Confidence 9875432 45566666 5899999999999999998 999999988632221 23566778999999
Q ss_pred CCCCEEEEEEeecccccccEEEEEeccc---eeee----eccccEeeEEEeeC
Q 005315 555 PTGRYVATAVTSVHEMENGFNIWSFNGK---LLYR----TLKDHFFQFLWRPR 600 (702)
Q Consensus 555 pdg~~l~t~s~~~~~~d~~v~iw~~~g~---~l~~----~~~~~i~~~~w~p~ 600 (702)
|++++++|+|. |..|++|..... .+.+ .....++.++|.|-
T Consensus 628 pde~~FaTaSR-----DK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 628 PDEKYFATASR-----DKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred cccceeEEecC-----CceEEEEeccCchhhhhhhhchhccCCceeeEEeecc
Confidence 99999999999 999999987643 2222 13467888888774
No 99
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=171.82 Aligned_cols=279 Identities=16% Similarity=0.236 Sum_probs=181.7
Q ss_pred cceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005315 206 ESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 282 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~ 282 (702)
..|++||+.|.+||.|+.+| +.|||.. ++..-..+ |...|.+++||+||++|+|+|.| ..|.+||+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D----------~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFD-TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRD----------WSIKLWDL 94 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcc-ccchhhhhhccccceeEEEecCCCCEeeeecCC----------ceeEEEec
Confidence 67999999999999999999 8999999 77644444 44569999999999999999999 89999999
Q ss_pred cCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC-CcEEEEecCCeEEEEecCC--cccccceeecc-C-CeeEEE
Q 005315 283 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMISVYETES--FTLIDKKSLKV-E-NVMDFS 357 (702)
Q Consensus 283 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d-g~~la~~~d~~i~v~d~~~--~~~~~~~~~~~-~-~v~~~~ 357 (702)
..|.+++.+...... | ...|.|.+ .+.+|+.-+..-.+-++.. ..++..-.-.. . ...+..
T Consensus 95 ~~gs~l~rirf~spv-------------~-~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 95 LKGSPLKRIRFDSPV-------------W-GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred cCCCceeEEEccCcc-------------c-eeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence 999999888765432 4 46888842 2344444343333333322 11111100000 0 011112
Q ss_pred eCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEE
Q 005315 358 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 437 (702)
Q Consensus 358 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 437 (702)
| .+.|+|+++++..+. +.+++.
T Consensus 161 f-------------------------------------------------dr~g~yIitGtsKGk---------llv~~a 182 (405)
T KOG1273|consen 161 F-------------------------------------------------DRRGKYIITGTSKGK---------LLVYDA 182 (405)
T ss_pred c-------------------------------------------------cCCCCEEEEecCcce---------EEEEec
Confidence 3 444445444444332 233332
Q ss_pred ecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCc---CceEEEEEcC----CCceeEEEE
Q 005315 438 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA---GRVSKLTTLK----GKQANALFW 510 (702)
Q Consensus 438 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~---~~~~~~~~~~----~~~v~~~~~ 510 (702)
....+- ....+.. ...|.++-++-.|++|++-+.|. .|+.|+++.-... ....+.+.+. ..+-++++|
T Consensus 183 ~t~e~v-as~rits-~~~IK~I~~s~~g~~liiNtsDR---vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf 257 (405)
T KOG1273|consen 183 ETLECV-ASFRITS-VQAIKQIIVSRKGRFLIINTSDR---VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF 257 (405)
T ss_pred chheee-eeeeech-heeeeEEEEeccCcEEEEecCCc---eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence 221110 0111100 35677788899999999999998 9999998632111 1111222221 113467999
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCCcceeeeccc---CceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~---~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
|.+|.|++.++. ....++||....|.++...|. ....++.|.|-...|++... |.++||...
T Consensus 258 s~dgeYv~a~s~--~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~s------g~v~iw~~~ 322 (405)
T KOG1273|consen 258 SGDGEYVCAGSA--RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIAS------GVVYIWAVV 322 (405)
T ss_pred cCCccEEEeccc--cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccC------CceEEEEee
Confidence 999999988874 367899999999988877555 34678999999888888854 899999853
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=3.9e-20 Score=187.94 Aligned_cols=319 Identities=14% Similarity=0.209 Sum_probs=230.9
Q ss_pred cccCCCCCceEEEEeCCceEEEecCCCCCCCcc--cccCCCcccceEEECC------------CCcEEEEEeCCc-eEEe
Q 005315 165 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEP--VYKRSYWTESFVQWSP------------LGTYLATVHRQG-AAVW 229 (702)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~v~~v~~Sp------------dg~~lat~~~~~-i~iw 229 (702)
..+|+ .++-+...+++....+|+.....++-. .+-.|...|+.|.--| -| .+.|++.|+ |+||
T Consensus 330 ~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 330 CQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLW 407 (1080)
T ss_pred EEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEe
Confidence 34444 456677888999999999843333322 3345666666554333 23 467777777 8999
Q ss_pred ecCc--Ccceeee---------------------------e---------cCCCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005315 230 GGAN--TFNRLMR---------------------------Y---------AHPQVKLIDFSPGEKYLVTYSSHEPSNPRD 271 (702)
Q Consensus 230 ~~~~--~~~~~~~---------------------------~---------~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~ 271 (702)
++.. ......+ | ..-++.+++.||+|++||+|...
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~------- 480 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG------- 480 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc-------
Confidence 9872 0111000 0 01248999999999999999998
Q ss_pred CCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCC--CCcEEEEec-CCeEEEEecCC-ccccccee
Q 005315 272 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG--KDKYFAKLG-KNMISVYETES-FTLIDKKS 347 (702)
Q Consensus 272 ~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~--dg~~la~~~-d~~i~v~d~~~-~~~~~~~~ 347 (702)
|+++||++..-+.+..+..|...+. |+.+|.- ..++||+++ |..|+|||+.. ..++....
T Consensus 481 ---GnlrVy~Lq~l~~~~~~eAHesEil-------------cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld 544 (1080)
T KOG1408|consen 481 ---GNLRVYDLQELEYTCFMEAHESEIL-------------CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD 544 (1080)
T ss_pred ---CceEEEEehhhhhhhheecccceeE-------------EEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence 9999999998888888888887763 6777742 346899999 99999999874 34555666
Q ss_pred eccCCeeEEEeCCCC--CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccc
Q 005315 348 LKVENVMDFSWSPTD--PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 425 (702)
Q Consensus 348 ~~~~~v~~~~~sp~~--~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 425 (702)
.|...|+++.|...| ..+++ +|.|..+.+....- +.+|..+.-. .+
T Consensus 545 ~HSssITsvKFa~~gln~~Mis-----cGADksimFr~~qk---------------------~~~g~~f~r~--t~---- 592 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMIS-----CGADKSIMFRVNQK---------------------ASSGRLFPRH--TQ---- 592 (1080)
T ss_pred ccccceeEEEEeecCCceEEEe-----ccCchhhheehhcc---------------------ccCceecccc--cc----
Confidence 788889999998776 45555 66666544322110 1112111000 00
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--
Q 005315 426 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 503 (702)
Q Consensus 426 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 503 (702)
. -....+.+++..|..+++++++.|. +|+||++.+++ ..+.+++.
T Consensus 593 ----------------------t--~~ktTlYDm~Vdp~~k~v~t~cQDr---nirif~i~sgK------q~k~FKgs~~ 639 (1080)
T KOG1408|consen 593 ----------------------T--LSKTTLYDMAVDPTSKLVVTVCQDR---NIRIFDIESGK------QVKSFKGSRD 639 (1080)
T ss_pred ----------------------c--cccceEEEeeeCCCcceEEEEeccc---ceEEEeccccc------eeeeeccccc
Confidence 0 1145677889999999999999999 99999998776 55555532
Q ss_pred ---ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 504 ---QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 504 ---~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
..-.+...|.|-||++... |.+|.|+|+-+++++.+ +|...|+.+.|++|.+.|++.+. |+.|.||.
T Consensus 640 ~eG~lIKv~lDPSgiY~atScs---dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsg-----DgCIFvW~ 711 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCS---DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSG-----DGCIFVWK 711 (1080)
T ss_pred CCCceEEEEECCCccEEEEeec---CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecC-----CceEEEEE
Confidence 4567889999999999998 99999999999999875 78889999999999999999999 99999999
Q ss_pred ecc
Q 005315 579 FNG 581 (702)
Q Consensus 579 ~~g 581 (702)
+.-
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 853
No 101
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.87 E-value=4.9e-21 Score=177.82 Aligned_cols=343 Identities=14% Similarity=0.232 Sum_probs=231.1
Q ss_pred eEEECCCCcEEEEEeCCceEEeecCcCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc
Q 005315 208 FVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK 286 (702)
Q Consensus 208 ~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~-~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~ 286 (702)
.++|||+|+|+|+.+...+.|-|.. +.+...-|. ...|..|.|+.|.-+++.+.... +.|.+|++...+
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~-tlq~~qlf~cldki~yieW~ads~~ilC~~yk~---------~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSE-TLQLHQLFLCLDKIVYIEWKADSCHILCVAYKD---------PKVQVWSLVQPE 82 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccc-hhhHHHHHHHHHHhhheeeeccceeeeeeeecc---------ceEEEEEeecce
Confidence 6799999999999999999999998 777666654 44689999999998877655431 689999997666
Q ss_pred EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCe
Q 005315 287 VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI 364 (702)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 364 (702)
--..+....... . .++||| ||+.|...+ +-.|.||.+.+.+...-. ....++..++|+|+|++
T Consensus 83 w~ckIdeg~agl-----------s--~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 83 WYCKIDEGQAGL-----------S--SISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQF 147 (447)
T ss_pred eEEEeccCCCcc-----------e--eeeECC-CcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCce
Confidence 555555443332 2 789999 997666655 899999999876543211 22345789999999999
Q ss_pred EEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005315 365 ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 444 (702)
Q Consensus 365 la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 444 (702)
.+.... .|-.-.+.+..-.....++.......+...+.|+|||..|++-..--. ..++.
T Consensus 148 ~ai~sR----rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---------ykv~a-------- 206 (447)
T KOG4497|consen 148 CAILSR----RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---------YKVYA-------- 206 (447)
T ss_pred eeeeec----ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---------heeee--------
Confidence 987422 121111111111111222333333445556799999999988543211 11111
Q ss_pred eEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeec-----c----------c--------------------
Q 005315 445 EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT-----A----------Q-------------------- 489 (702)
Q Consensus 445 ~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~-----~----------~-------------------- 489 (702)
. ...-.+..++|+|.++++++|+.|+ .+++.+--+ . .
T Consensus 207 --Y---e~~lG~k~v~wsP~~qflavGsyD~---~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 207 --Y---ERGLGLKFVEWSPCNQFLAVGSYDQ---MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred --e---eeccceeEEEeccccceEEeeccch---hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 0 1135677899999999999999986 444432110 0 0
Q ss_pred --------C----c-------CceEEEEEcC--------CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee
Q 005315 490 --------H----A-------GRVSKLTTLK--------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 542 (702)
Q Consensus 490 --------~----~-------~~~~~~~~~~--------~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~ 542 (702)
+ . .....+..+. ...+..++||+|..|+++-.. +.-+.+.+||+...++...
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd-~~PnalW~Wdlq~l~l~av 357 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND-KYPNALWLWDLQNLKLHAV 357 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC-CCCceEEEEechhhhhhhh
Confidence 0 0 0000111111 013567999999999998873 3478899999998777654
Q ss_pred -cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeeecc--ccEeeEEEeeCCCCCCChhhH
Q 005315 543 -AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK--DHFFQFLWRPRPPSFLTPEKE 610 (702)
Q Consensus 543 -~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~~--~~i~~~~w~p~~~~l~s~~~d 610 (702)
....+|....|+|.-..|+.+.. ...+++|...|......+. -.|..+.|.-.|..++-.++|
T Consensus 358 LiQk~piraf~WdP~~prL~vctg-----~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 358 LIQKHPIRAFEWDPGRPRLVVCTG-----KSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred hhhccceeEEEeCCCCceEEEEcC-----CceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCC
Confidence 44578999999999988888888 6789999999865554433 468889999999887766655
No 102
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=4.8e-19 Score=180.65 Aligned_cols=288 Identities=14% Similarity=0.202 Sum_probs=194.2
Q ss_pred eEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEE-EEeCCc-eEEeecCcCcceeeeec-CCCeeEEE
Q 005315 174 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLA-TVHRQG-AAVWGGANTFNRLMRYA-HPQVKLID 250 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~la-t~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~ 250 (702)
.|+..+.++...+|+. ..++....+..+. .+.+++|+|+|++++ +++.++ +.+|+.. +++.+..+. +..+..++
T Consensus 3 ~~~s~~~d~~v~~~d~-~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 3 AYVSNEKDNTISVIDT-ATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLA-TGEVIGTLPSGPDPELFA 79 (300)
T ss_pred EEEEecCCCEEEEEEC-CCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECC-CCcEEEeccCCCCccEEE
Confidence 4556667788889997 4566666666554 367899999999874 555555 8899998 776666554 34577899
Q ss_pred ecCCCCEEEEEc-CCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-
Q 005315 251 FSPGEKYLVTYS-SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 328 (702)
Q Consensus 251 fSpdg~~l~t~s-~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~- 328 (702)
|+|+|+++++++ .+ +.|++||+.+++.+..+..+.... .+.|+| +|++++++.
T Consensus 80 ~~~~g~~l~~~~~~~----------~~l~~~d~~~~~~~~~~~~~~~~~--------------~~~~~~-dg~~l~~~~~ 134 (300)
T TIGR03866 80 LHPNGKILYIANEDD----------NLVTVIDIETRKVLAEIPVGVEPE--------------GMAVSP-DGKIVVNTSE 134 (300)
T ss_pred ECCCCCEEEEEcCCC----------CeEEEEECCCCeEEeEeeCCCCcc--------------eEEECC-CCCEEEEEec
Confidence 999999886654 45 789999999888887776433222 689999 999998887
Q ss_pred C-CeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEE
Q 005315 329 K-NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 407 (702)
Q Consensus 329 d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (702)
+ ..+.+|+..++..+... ........++|+|+++.|++ + ......|.+|+..+.+.+.....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~-----~-~~~~~~v~i~d~~~~~~~~~~~~---------- 197 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNV-LVDQRPRFAEFTADGKELWV-----S-SEIGGTVSVIDVATRKVIKKITF---------- 197 (300)
T ss_pred CCCeEEEEeCCCCeEEEEE-EcCCCccEEEECCCCCEEEE-----E-cCCCCEEEEEEcCcceeeeeeee----------
Confidence 4 45778898877654332 12234577899999998865 2 22233566666654432221110
Q ss_pred ccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEee
Q 005315 408 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMR 486 (702)
Q Consensus 408 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~ 486 (702)
.. .+.. ........++|+|+|++++++.. ++ .+.+||++
T Consensus 198 ~~------------------------------~~~~-------~~~~~~~~i~~s~dg~~~~~~~~~~~---~i~v~d~~ 237 (300)
T TIGR03866 198 EI------------------------------PGVH-------PEAVQPVGIKLTKDGKTAFVALGPAN---RVAVVDAK 237 (300)
T ss_pred cc------------------------------cccc-------cccCCccceEECCCCCEEEEEcCCCC---eEEEEECC
Confidence 00 0000 00112345789999998766544 33 79999986
Q ss_pred cccCcCceEEEEEc-CCCceeEEEEccCCCEEEEEe-ccCCCceEEEEECCCcceeeec-ccCceeeeEECC
Q 005315 487 TAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAG-LKGFNGQLEFYNVDELETMATA-EHFMATDVEWDP 555 (702)
Q Consensus 487 ~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~-~~~~dg~v~i~d~~~~~~~~~~-~~~~i~~~~~sp 555 (702)
++. .+..+ .++.+.+++|+|+|++|++++ . +|.|.+||+.+++.+... .....+.++++|
T Consensus 238 ~~~------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 238 TYE------VLDYLLVGQRVWQLAFTPDEKYLLTTNGV---SNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCc------EEEEEEeCCCcceEEECCCCCEEEEEcCC---CCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 543 23222 355788999999999998764 3 799999999998876653 235557777765
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=6.2e-21 Score=187.17 Aligned_cols=284 Identities=13% Similarity=0.265 Sum_probs=188.4
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
-|..+++-|.|-.+++|+.| .+|++||..... ..+.|..-...- +.. ..+++||+ .|..
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~D----------y~v~~wDf~gMdas~~~fr~l~P~E----~h~-----i~sl~ys~-Tg~~ 228 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLD----------YTVKFWDFQGMDASMRSFRQLQPCE----THQ-----INSLQYSV-TGDQ 228 (641)
T ss_pred EEEEeeecCCCceeeecccc----------ceEEEEecccccccchhhhccCccc----ccc-----cceeeecC-CCCe
Confidence 39999999999999999999 999999985432 122232111000 000 11689999 8776
Q ss_pred EEEec-CCeEEEEecCCccccc------------ceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 324 FAKLG-KNMISVYETESFTLID------------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 324 la~~~-d~~i~v~d~~~~~~~~------------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
|++.+ ....+|+|-.....+. ....|...+++-+
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~--------------------------------- 275 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGC--------------------------------- 275 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccc---------------------------------
Confidence 66555 8889999876443321 1122333344444
Q ss_pred eeeeeeecccccceeEEccCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEE---ecCCCCceeEEEEeeCCc
Q 005315 391 ELRQKNLFSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---LDNKNDKIIAFAWEPKGH 466 (702)
Q Consensus 391 ~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~h~~~v~~~~~sp~g~ 466 (702)
|+|..+ .+++++.+++ ++||++.........+. ..+..-++++++|+|+|+
T Consensus 276 ----------------whP~~k~~FlT~s~Dgt---------lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~ 330 (641)
T KOG0772|consen 276 ----------------WHPDNKEEFLTCSYDGT---------LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK 330 (641)
T ss_pred ----------------cccCcccceEEecCCCc---------EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc
Confidence 555433 3334444444 56666654333322222 113355789999999999
Q ss_pred EEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce-eee-
Q 005315 467 RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-MAT- 542 (702)
Q Consensus 467 ~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~-~~~- 542 (702)
.||.++.|| .|.+|+....... ..-.++..+ +..|+++.||+||++|++-+. |+++++||++..+. +..
T Consensus 331 ~iAagc~DG---SIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~---D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 331 LIAAGCLDG---SIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDGNYLLSRGF---DDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred hhhhcccCC---ceeeeecCCcccc-cceEeeeccCCCCceeEEEeccccchhhhccC---CCceeeeeccccccchhhh
Confidence 999999999 9999998433221 112333333 347999999999999999988 99999999996543 322
Q ss_pred ---cccCceeeeEECCCCCEEEEEEee-cccccccEEEEEecc-ceeeeec--cccEeeEEEeeCCCCCCChhhHHHH
Q 005315 543 ---AEHFMATDVEWDPTGRYVATAVTS-VHEMENGFNIWSFNG-KLLYRTL--KDHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 543 ---~~~~~i~~~~~spdg~~l~t~s~~-~~~~d~~v~iw~~~g-~~l~~~~--~~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
.....-++++|||+.+.|++|++. .-...+.+.+|+... ..+++.. ...+..+.|+|.-+.|+.++.++.+
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCce
Confidence 334677899999999999999886 222356788888543 4455553 3678899999998888877766654
No 104
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=1.7e-19 Score=191.29 Aligned_cols=266 Identities=8% Similarity=0.153 Sum_probs=182.1
Q ss_pred cccceEEECCCCcEEEEEeCCce-EEeecCcCcce--------------eeeecCCCeeEEEecC-CCCEEEEEcCCCCC
Q 005315 204 WTESFVQWSPLGTYLATVHRQGA-AVWGGANTFNR--------------LMRYAHPQVKLIDFSP-GEKYLVTYSSHEPS 267 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~i-~iw~~~~~~~~--------------~~~~~~~~v~~i~fSp-dg~~l~t~s~d~~~ 267 (702)
..++....++|+..+++++.+.+ ..|+..+.... +..-|...|.+++|+| ++++|++++.|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D--- 97 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED--- 97 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC---
Confidence 44556666777666666666663 36665422111 1122333599999999 88999999999
Q ss_pred CCcCCCccEEEEEEccCCc-------EEeeccCCCcccccCCCCCCCCcccceEEEcCCCC-cEEEEec-CCeEEEEecC
Q 005315 268 NPRDANRVVINIFDVRTGK-------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETE 338 (702)
Q Consensus 268 ~~~~~~~~~i~vwd~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg-~~la~~~-d~~i~v~d~~ 338 (702)
++|+|||+.++. .+..+.+|...+. +++|+| ++ .+|++++ |+.|+|||+.
T Consensus 98 -------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-------------~l~f~P-~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 98 -------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-------------IVSFHP-SAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred -------CEEEEEecCCCccccccCcceEEecCCCCcEE-------------EEEeCc-CCCCEEEEEeCCCEEEEEECC
Confidence 999999997653 4667778876653 789999 85 6888888 9999999999
Q ss_pred CcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc-ccceeEEccCCCEEEEE
Q 005315 339 SFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-SDCKMYWQSSGDYLAVK 417 (702)
Q Consensus 339 ~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~l~~~ 417 (702)
++..+.....|...|.+++|+|+|.+|++ ++.|+.++| |+..+.+.+.....+.. ......|.+++..+++.
T Consensus 157 tg~~~~~l~~h~~~V~sla~spdG~lLat-----gs~Dg~IrI--wD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 157 RGKAVEVIKCHSDQITSLEWNLDGSLLCT-----TSKDKKLNI--IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred CCeEEEEEcCCCCceEEEEEECCCCEEEE-----ecCCCEEEE--EECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 88776666667778999999999999998 777776655 55555555444333322 22356799988887765
Q ss_pred EcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEE-cCCCCCeEEEEEeecccCcCceEE
Q 005315 418 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSK 496 (702)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~ 496 (702)
..... ....+.+|+++....+.....+ .+...+....|+|++++|++++ +|+ .|++|++.++.. ..
T Consensus 230 G~s~s-----~Dr~VklWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg---~Iriwdl~~~~~----~~ 296 (493)
T PTZ00421 230 GCSKS-----QQRQIMLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEG---NIRCFELMNERL----TF 296 (493)
T ss_pred ecCCC-----CCCeEEEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCC---eEEEEEeeCCce----EE
Confidence 43210 1233899999876555443333 2234566678999999999887 488 999999976541 11
Q ss_pred EEEcC-CCceeEEEEccC
Q 005315 497 LTTLK-GKQANALFWSPS 513 (702)
Q Consensus 497 ~~~~~-~~~v~~~~~spd 513 (702)
...+. ..+...++|.|.
T Consensus 297 ~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 297 CSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EeeccCCCCCcceEeccc
Confidence 12222 335677888885
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.7e-20 Score=194.11 Aligned_cols=263 Identities=14% Similarity=0.290 Sum_probs=186.6
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-cEEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
|..+-+.|+|.|+|.+|++++.+ +.|++|+..+- ..-.++..+...+ ..... +
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsd----------g~ir~~~~~sd~e~P~ti~~~g~~v---------------~~ia~-~ 65 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSD----------GDIRKWKTNSDEEEPETIDISGELV---------------SSIAC-Y 65 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCC----------CceEEeecCCcccCCchhhccCcee---------------EEEee-c
Confidence 44568999999999999999999 99999997555 3333333232222 23334 6
Q ss_pred CcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecc
Q 005315 321 DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS 399 (702)
Q Consensus 321 g~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 399 (702)
+.+|++++ +++|.+|..+++..-....--.-++.+++++.+|+.+|. ||.|..+++.
T Consensus 66 s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaa-----gsdD~~vK~~----------------- 123 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAA-----GSDDTAVKLL----------------- 123 (933)
T ss_pred ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEe-----ecCceeEEEE-----------------
Confidence 66888888 999999999977543222122234777888888888877 5555444432
Q ss_pred cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCe
Q 005315 400 VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD 479 (702)
Q Consensus 400 ~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~ 479 (702)
.+...+ ....+.+|.++|.++.++|++.+||+.+.|| .
T Consensus 124 ------------------------------------~~~D~s---~~~~lrgh~apVl~l~~~p~~~fLAvss~dG---~ 161 (933)
T KOG1274|consen 124 ------------------------------------NLDDSS---QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG---K 161 (933)
T ss_pred ------------------------------------eccccc---hheeecccCCceeeeeEcCCCCEEEEEecCc---e
Confidence 111111 1134568899999999999999999999999 9
Q ss_pred EEEEEeecccCcCceEEE---EEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee----cccCceeee
Q 005315 480 ISFYSMRTAQHAGRVSKL---TTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT----AEHFMATDV 551 (702)
Q Consensus 480 v~i~d~~~~~~~~~~~~~---~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~----~~~~~i~~~ 551 (702)
|+||++.++.-...+..+ ..+. ...++.++|+|+|..+++.+. ++.|.+|+..++..... .++..++++
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~---d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV---DNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc---CCeEEEEccCCceeheeecccccccceEEE
Confidence 999999865422111111 1111 234678999999777777766 99999999998776543 334558999
Q ss_pred EECCCCCEEEEEEeecccccccEEEEEeccceeeeeccccEeeEEEeeCCCC
Q 005315 552 EWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPS 603 (702)
Q Consensus 552 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~~~~i~~~~w~p~~~~ 603 (702)
+|||+|+|||+++. +|.|.|||.+... .......|.+++|.|+.+.
T Consensus 239 ~wsPnG~YiAAs~~-----~g~I~vWnv~t~~-~~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 239 QWSPNGKYIAASTL-----DGQILVWNVDTHE-RHEFKRAVCCEAWKPNANA 284 (933)
T ss_pred EEcCCCcEEeeecc-----CCcEEEEecccch-hccccceeEEEecCCCCCe
Confidence 99999999999999 9999999998621 1334478999999998764
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=8.4e-20 Score=168.08 Aligned_cols=271 Identities=14% Similarity=0.175 Sum_probs=186.4
Q ss_pred CCcccceEEECC-CCcEEEEEeCCc-eEEeecCcCcceeeee--cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005315 202 SYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRY--AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 276 (702)
Q Consensus 202 ~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~ 276 (702)
-..+|++++||| ...+|+.++-|+ |++|+++.++..+-+. .|+ .|.+++||.||..+++++.| +.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D----------k~ 95 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD----------KQ 95 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC----------Cc
Confidence 457899999999 555666888888 9999998444433332 344 49999999999999999999 99
Q ss_pred EEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc--EEEEec-CCeEEEEecCCcccccceeeccCCe
Q 005315 277 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK--YFAKLG-KNMISVYETESFTLIDKKSLKVENV 353 (702)
Q Consensus 277 i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~--~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v 353 (702)
+++||+.+++ +..+..|...+. .+.|-+ ... .|++++ |++|+.||++....+....+. +.+
T Consensus 96 ~k~wDL~S~Q-~~~v~~Hd~pvk-------------t~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRv 159 (347)
T KOG0647|consen 96 AKLWDLASGQ-VSQVAAHDAPVK-------------TCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERV 159 (347)
T ss_pred eEEEEccCCC-eeeeeeccccee-------------EEEEec-CCCcceeEecccccceeecccCCCCeeeeeecc-cee
Confidence 9999999995 566777776653 677776 554 789999 999999999866555433221 122
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEE
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 433 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 433 (702)
.++..- ...+++ +..+..+ .
T Consensus 160 Ya~Dv~--~pm~vV-----ata~r~i-----------------------------------------------------~ 179 (347)
T KOG0647|consen 160 YAADVL--YPMAVV-----ATAERHI-----------------------------------------------------A 179 (347)
T ss_pred eehhcc--CceeEE-----EecCCcE-----------------------------------------------------E
Confidence 222211 122232 1222222 2
Q ss_pred EEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc--cCcCceEEEEEcC---C--Ccee
Q 005315 434 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA--QHAGRVSKLTTLK---G--KQAN 506 (702)
Q Consensus 434 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~--~~~~~~~~~~~~~---~--~~v~ 506 (702)
+|.|.........++- .-+..+++++..++.+.+|.++-+| .+.|..+..+ .....+++.+.-. + -.|+
T Consensus 180 vynL~n~~te~k~~~S-pLk~Q~R~va~f~d~~~~alGsiEG---rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIES-PLKWQTRCVACFQDKDGFALGSIEG---RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred EEEcCCCcchhhhhcC-cccceeeEEEEEecCCceEeeeecc---eEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 3333221110000000 0156788899999998899999998 8888888764 2222333333211 1 1578
Q ss_pred EEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEe
Q 005315 507 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 507 ~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
+++|+|.-..|++++. ||++.|||-+....+.+ .+..+|++..|+.+|.++|.+..
T Consensus 256 si~FhP~hgtlvTaGs---DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 256 SIAFHPVHGTLVTAGS---DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceEeecccceEEEecC---CceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 9999999889999988 99999999986666654 56689999999999999999887
No 107
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2e-20 Score=195.40 Aligned_cols=239 Identities=15% Similarity=0.310 Sum_probs=169.9
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc------------------------------------
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK------------------------------------ 286 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~------------------------------------ 286 (702)
...|.++.||+||+|||+|+.| +.|+||.+...+
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD----------~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGED----------GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCC----------ceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3359999999999999999999 999999985510
Q ss_pred ------------------------EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc
Q 005315 287 ------------------------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 341 (702)
Q Consensus 287 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~ 341 (702)
+++.|.+|...+. .+.||. ++ +|.+++ |.+|++|.+....
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DIL-------------DlSWSK-n~-fLLSSSMDKTVRLWh~~~~~ 401 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADIL-------------DLSWSK-NN-FLLSSSMDKTVRLWHPGRKE 401 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhhe-------------eccccc-CC-eeEeccccccEEeecCCCcc
Confidence 1112223333321 678887 54 666666 9999999999888
Q ss_pred cccceeeccCCeeEEEeCCC-CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcc
Q 005315 342 LIDKKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 420 (702)
++..+ .|..-|++++|+|. ++++++ |+-|+.++||- ++..+.+ .|.
T Consensus 402 CL~~F-~HndfVTcVaFnPvDDryFiS-----GSLD~KvRiWs--I~d~~Vv-------------~W~------------ 448 (712)
T KOG0283|consen 402 CLKVF-SHNDFVTCVAFNPVDDRYFIS-----GSLDGKVRLWS--ISDKKVV-------------DWN------------ 448 (712)
T ss_pred eeeEE-ecCCeeEEEEecccCCCcEee-----cccccceEEee--cCcCeeE-------------eeh------------
Confidence 88554 68888999999995 678888 77777766553 3222211 111
Q ss_pred cccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEE--
Q 005315 421 YTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT-- 498 (702)
Q Consensus 421 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~-- 498 (702)
.+ ..-|++++++|+|++.++|+-+| .++||+....+..... .+.
T Consensus 449 ---------------------------Dl---~~lITAvcy~PdGk~avIGt~~G---~C~fY~t~~lk~~~~~-~I~~~ 494 (712)
T KOG0283|consen 449 ---------------------------DL---RDLITAVCYSPDGKGAVIGTFNG---YCRFYDTEGLKLVSDF-HIRLH 494 (712)
T ss_pred ---------------------------hh---hhhheeEEeccCCceEEEEEecc---EEEEEEccCCeEEEee-eEeec
Confidence 12 56799999999999999999999 9999998643311000 111
Q ss_pred ---EcCCCceeEEEEccCCC-EEEEEeccCCCceEEEEECCCcceeeecc--c--CceeeeEECCCCCEEEEEEeecccc
Q 005315 499 ---TLKGKQANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDELETMATAE--H--FMATDVEWDPTGRYVATAVTSVHEM 570 (702)
Q Consensus 499 ---~~~~~~v~~~~~spdg~-~l~~~~~~~~dg~v~i~d~~~~~~~~~~~--~--~~i~~~~~spdg~~l~t~s~~~~~~ 570 (702)
...++.|+.+.|.|... .+++.+. |..|+|||..+..++.... + ..-....|+.||++|++++.
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSn---DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se----- 566 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSN---DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE----- 566 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecC---CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec-----
Confidence 11133699999998543 3555555 9999999997666554422 1 23356889999999999998
Q ss_pred cccEEEEEecc
Q 005315 571 ENGFNIWSFNG 581 (702)
Q Consensus 571 d~~v~iw~~~g 581 (702)
|..|+||++..
T Consensus 567 Ds~VYiW~~~~ 577 (712)
T KOG0283|consen 567 DSWVYIWKNDS 577 (712)
T ss_pred CceEEEEeCCC
Confidence 99999999854
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=2.7e-21 Score=184.93 Aligned_cols=272 Identities=17% Similarity=0.254 Sum_probs=205.7
Q ss_pred eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCcccceE
Q 005315 237 RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 237 ~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 314 (702)
....+|...|..+.|-++...|++++.| ..|++|++..++ .+.++.+..+.++ .+
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~D----------r~Ik~W~v~~~k~~~~~tLaGs~g~it-------------~~ 225 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSD----------RIIKLWNVLGEKSELISTLAGSLGNIT-------------SI 225 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchh----------hhhhhhhcccchhhhhhhhhccCCCcc-------------ee
Confidence 3344455569999999998999999999 899999986665 5666666655543 68
Q ss_pred EEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 315 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 315 ~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
.|.+ +++++...+ |+.+++|++...++...+++|...|.++.|......++. ++.+.++++|.+. .....+
T Consensus 226 d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs-----gs~DRtiK~WDl~--k~~C~k 297 (459)
T KOG0288|consen 226 DFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS-----GSADRTIKLWDLQ--KAYCSK 297 (459)
T ss_pred eecC-CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee-----ccccchhhhhhhh--hhheec
Confidence 8888 888777777 999999999999999999999999999999887666666 6677776655432 111000
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 473 (702)
.+ + ....+.+++.+ ...+++++.
T Consensus 298 --t~---------------------------------------------------l--~~S~cnDI~~~--~~~~~SgH~ 320 (459)
T KOG0288|consen 298 --TV---------------------------------------------------L--PGSQCNDIVCS--ISDVISGHF 320 (459)
T ss_pred --cc---------------------------------------------------c--ccccccceEec--ceeeeeccc
Confidence 00 0 02333344443 445777788
Q ss_pred CCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeec------ccC
Q 005315 474 DSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA------EHF 546 (702)
Q Consensus 474 d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~------~~~ 546 (702)
|+ +|++||.++.. +..+.+ ++.|+++..+++|..|.+++. |.++.+.|+.+.++.... ...
T Consensus 321 Dk---kvRfwD~Rs~~------~~~sv~~gg~vtSl~ls~~g~~lLsssR---Ddtl~viDlRt~eI~~~~sA~g~k~as 388 (459)
T KOG0288|consen 321 DK---KVRFWDIRSAD------KTRSVPLGGRVTSLDLSMDGLELLSSSR---DDTLKVIDLRTKEIRQTFSAEGFKCAS 388 (459)
T ss_pred cc---ceEEEeccCCc------eeeEeecCcceeeEeeccCCeEEeeecC---CCceeeeecccccEEEEeecccccccc
Confidence 88 89999998765 556655 447999999999999999987 999999999987766542 124
Q ss_pred ceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee---cc--ccEeeEEEeeCCCCCCChhhHHHH
Q 005315 547 MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LK--DHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 547 ~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~---~~--~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
..+.+.|||+|.|+|+|+. |+.|+||++.+..+... .. ..|+++.|.|.|..+++++.++.+
T Consensus 389 DwtrvvfSpd~~YvaAGS~-----dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSA-----DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred ccceeEECCCCceeeeccC-----CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 4778999999999999999 99999999886544433 22 269999999999999998876543
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=1.7e-20 Score=183.22 Aligned_cols=277 Identities=13% Similarity=0.154 Sum_probs=209.8
Q ss_pred CCCcccceEEECCCCcEEEEEeCCceEEeecCcCc--ceeeeec---CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTF--NRLMRYA---HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANR 274 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~--~~~~~~~---~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~ 274 (702)
.|..-|..+.+|...++++||+..+|+|||+.+.+ ..+..+. .. -++++.++|||+.|++|+.-
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea---------- 486 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA---------- 486 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc----------
Confidence 46667888999999999999999999999987332 2333332 11 29999999999999999998
Q ss_pred cEEEEEEccCCcEE--eeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccC
Q 005315 275 VVINIFDVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE 351 (702)
Q Consensus 275 ~~i~vwd~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~ 351 (702)
.++.|||+.+-.+. ..+...... +..++.|| |.+.+.++. ||.|.|||+.+..+++.+..|..
T Consensus 487 stlsiWDLAapTprikaeltssapa-------------CyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPA-------------CYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchh-------------hhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 89999998655432 122211111 22678899 998765555 99999999999999999999999
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 431 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 431 (702)
++.+|..+++|..|-+ |+-|+.++-|.. ...+.+..
T Consensus 553 GascIdis~dGtklWT-----GGlDntvRcWDl--regrqlqq------------------------------------- 588 (705)
T KOG0639|consen 553 GASCIDISKDGTKLWT-----GGLDNTVRCWDL--REGRQLQQ------------------------------------- 588 (705)
T ss_pred CceeEEecCCCceeec-----CCCccceeehhh--hhhhhhhh-------------------------------------
Confidence 9999999999999988 777777664432 22111111
Q ss_pred EEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEc
Q 005315 432 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 511 (702)
Q Consensus 432 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 511 (702)
..+ ...|.++..+|++.+++++-..+ .+.+........ ..-.++..-|-++.|+
T Consensus 589 ---------------hdF---~SQIfSLg~cP~~dWlavGMens---~vevlh~skp~k-----yqlhlheScVLSlKFa 642 (705)
T KOG0639|consen 589 ---------------HDF---SSQIFSLGYCPTGDWLAVGMENS---NVEVLHTSKPEK-----YQLHLHESCVLSLKFA 642 (705)
T ss_pred ---------------hhh---hhhheecccCCCccceeeecccC---cEEEEecCCccc-----eeecccccEEEEEEec
Confidence 112 56788888999999999999887 777766543221 2222334468899999
Q ss_pred cCCCEEEEEeccCCCceEEEEECCCcceee-ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 512 PSGRFIVLAGLKGFNGQLEFYNVDELETMA-TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 512 pdg~~l~~~~~~~~dg~v~i~d~~~~~~~~-~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
+.|+++++.+. |+-+..|...-+..+. ..+...|.++..|.|.+||+||+. |..-.+|.+
T Consensus 643 ~cGkwfvStGk---DnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSG-----dkkATVYeV 703 (705)
T KOG0639|consen 643 YCGKWFVSTGK---DNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSG-----DKKATVYEV 703 (705)
T ss_pred ccCceeeecCc---hhhhhhccCccccceeeccccCcceeeeeccCceEEEecCC-----CcceEEEEE
Confidence 99999999998 9999999998766655 467789999999999999999999 777777754
No 110
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=2.1e-20 Score=172.23 Aligned_cols=277 Identities=16% Similarity=0.270 Sum_probs=206.6
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC------------C------cEEeeccCCCcccccCCC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT------------G------KVMRDFKGSADEFAVGGT 303 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~------------g------~~~~~~~~~~~~~~~~~~ 303 (702)
|...+.+.+|||||.++|||+.| ..|+|.|+.. | -.++++..|...++
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD----------~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn---- 176 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSAD----------ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVN---- 176 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCc----------ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccc----
Confidence 44459999999999999999999 8999999851 1 24677777777664
Q ss_pred CCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccc--ceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcE
Q 005315 304 GGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID--KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 380 (702)
Q Consensus 304 ~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 380 (702)
++.|.| ....|++++ |++|++||...-.... +......+|.+++|+|.|.+|++ |..-. .
T Consensus 177 ---------~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllv-----gTdHp--~ 239 (430)
T KOG0640|consen 177 ---------DLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV-----GTDHP--T 239 (430)
T ss_pred ---------ceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEE-----ecCCC--c
Confidence 789999 999999999 9999999987433221 11123457999999999999997 33333 3
Q ss_pred EEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEE
Q 005315 381 VSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 460 (702)
Q Consensus 381 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 460 (702)
+.+|++.+.+.+... +| -..|.+.|+++.
T Consensus 240 ~rlYdv~T~Qcfvsa------------nP---------------------------------------d~qht~ai~~V~ 268 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSA------------NP---------------------------------------DDQHTGAITQVR 268 (430)
T ss_pred eeEEeccceeEeeec------------Cc---------------------------------------ccccccceeEEE
Confidence 344444332211100 01 125689999999
Q ss_pred EeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC----CCceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 461 WEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 461 ~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
+|+.|+..++++.|| .|+|||--+.. ++.++. +..|.+..|+.+|+|+++.+. |..+++|.+.+
T Consensus 269 Ys~t~~lYvTaSkDG---~IklwDGVS~r------Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~---DS~vkLWEi~t 336 (430)
T KOG0640|consen 269 YSSTGSLYVTASKDG---AIKLWDGVSNR------CVRTIGNAHGGSEVCSAVFTKNGKYILSSGK---DSTVKLWEIST 336 (430)
T ss_pred ecCCccEEEEeccCC---cEEeeccccHH------HHHHHHhhcCCceeeeEEEccCCeEEeecCC---cceeeeeeecC
Confidence 999999999999999 99999964332 444443 336899999999999999998 99999999999
Q ss_pred cceeeeccc-------CceeeeEECCCCCEEEEEEeecccccccEEEEEecc-c---eeeeeccccEeeEEEeeCCCCCC
Q 005315 537 LETMATAEH-------FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-K---LLYRTLKDHFFQFLWRPRPPSFL 605 (702)
Q Consensus 537 ~~~~~~~~~-------~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~---~l~~~~~~~i~~~~w~p~~~~l~ 605 (702)
++.+..... ..-+...|+....|++.-... .+.+.-||... . ++..-|.+.+..+.-+|.++.++
T Consensus 337 ~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa----s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 337 GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA----SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred CceEEEEecCCcccchhhhhhhhhcCccceEEccccc----cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCcee
Confidence 988875322 223456788888888877664 67888998653 2 33344778899999999999999
Q ss_pred ChhhHHHHHHH
Q 005315 606 TPEKEEEIAKN 616 (702)
Q Consensus 606 s~~~d~~i~~~ 616 (702)
|++.|..+|=+
T Consensus 413 TcsdD~raRFW 423 (430)
T KOG0640|consen 413 TCSDDFRARFW 423 (430)
T ss_pred eecccceeeee
Confidence 99999877733
No 111
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-18 Score=153.66 Aligned_cols=283 Identities=14% Similarity=0.248 Sum_probs=197.6
Q ss_pred CcccceEEECCCCcEEEEEeCCc-eEEe------ecCc-----Ccceeee----ecCCC-eeEEEecCCCCEEEEEcCCC
Q 005315 203 YWTESFVQWSPLGTYLATVHRQG-AAVW------GGAN-----TFNRLMR----YAHPQ-VKLIDFSPGEKYLVTYSSHE 265 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~~-i~iw------~~~~-----~~~~~~~----~~~~~-v~~i~fSpdg~~l~t~s~d~ 265 (702)
...|.+|+|.|.|.+.|.|+... .+|- ++.. ...+... -+|.+ |+|.+|||+|..|++|+.|
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd- 110 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND- 110 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC-
Confidence 45789999999999999999887 4443 2210 0011111 14544 9999999999999999999
Q ss_pred CCCCcCCCccEEEEEEccCCcE-----EeeccCCCcccccCCCCCCCCcccceEEEcCC---CCcEEEEec--CCeEEEE
Q 005315 266 PSNPRDANRVVINIFDVRTGKV-----MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG---KDKYFAKLG--KNMISVY 335 (702)
Q Consensus 266 ~~~~~~~~~~~i~vwd~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~---dg~~la~~~--d~~i~v~ 335 (702)
.+|++.-.....+ -..|..|.+.+. .++|-.. .+.+|++++ |..|++-
T Consensus 111 ---------k~ik~l~fn~dt~~~~g~dle~nmhdgtir-------------dl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 111 ---------KTIKVLPFNADTCNATGHDLEFNMHDGTIR-------------DLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred ---------ceEEEEecccccccccCcceeeeecCCcee-------------eeEEecCCCcCceEEEecCCCcceEEEe
Confidence 8888876533221 123444444331 4555330 456888888 6667777
Q ss_pred ecCCcccccceeeccCCeeEE-EeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEE
Q 005315 336 ETESFTLIDKKSLKVENVMDF-SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYL 414 (702)
Q Consensus 336 d~~~~~~~~~~~~~~~~v~~~-~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 414 (702)
|...++.....+.|.+.|..+ .| +|-.++. |+.++++++|.+..++.-...... +.
T Consensus 169 dc~~g~~~~a~sghtghilalysw--n~~m~~s-----gsqdktirfwdlrv~~~v~~l~~~----------~~------ 225 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILALYSW--NGAMFAS-----GSQDKTIRFWDLRVNSCVNTLDND----------FH------ 225 (350)
T ss_pred ecCCCCcceeecCCcccEEEEEEe--cCcEEEc-----cCCCceEEEEeeeccceeeeccCc----------cc------
Confidence 777787777777777766554 45 3566776 778888887776654321000000 00
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCce
Q 005315 415 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 494 (702)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 494 (702)
..+ + ....|.+++..|.|+.|+++..|. ...+||++.+.
T Consensus 226 ------------------------~~g-------l--essavaav~vdpsgrll~sg~~ds---sc~lydirg~r----- 264 (350)
T KOG0641|consen 226 ------------------------DGG-------L--ESSAVAAVAVDPSGRLLASGHADS---SCMLYDIRGGR----- 264 (350)
T ss_pred ------------------------CCC-------c--ccceeEEEEECCCcceeeeccCCC---ceEEEEeeCCc-----
Confidence 000 0 146788999999999999999998 89999998765
Q ss_pred EEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCC-----cceee-ecccCceeeeEECCCCCEEEEEEee
Q 005315 495 SKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE-----LETMA-TAEHFMATDVEWDPTGRYVATAVTS 566 (702)
Q Consensus 495 ~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~-----~~~~~-~~~~~~i~~~~~spdg~~l~t~s~~ 566 (702)
.+..+..| .|.++.|||...|+++++. |..|++-|+.. ...+. ..|...+..+.|.|..-.+++.+.
T Consensus 265 -~iq~f~phsadir~vrfsp~a~yllt~sy---d~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssa- 339 (350)
T KOG0641|consen 265 -MIQRFHPHSADIRCVRFSPGAHYLLTCSY---DMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSA- 339 (350)
T ss_pred -eeeeeCCCccceeEEEeCCCceEEEEecc---cceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccC-
Confidence 77777765 6899999999999999999 99999999973 11222 245567778999999888888888
Q ss_pred cccccccEEEEEecc
Q 005315 567 VHEMENGFNIWSFNG 581 (702)
Q Consensus 567 ~~~~d~~v~iw~~~g 581 (702)
|.+..+|.+.|
T Consensus 340 ----dkt~tlwa~~~ 350 (350)
T KOG0641|consen 340 ----DKTATLWALNG 350 (350)
T ss_pred ----cceEEEeccCC
Confidence 99999998764
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=1.2e-19 Score=174.68 Aligned_cols=268 Identities=13% Similarity=0.231 Sum_probs=204.6
Q ss_pred eEEEEeCCc-eEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCC-CeeEEE
Q 005315 174 QFVIRSGTD-TEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLID 250 (702)
Q Consensus 174 ~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~ 250 (702)
.+++++|.. ..++++. ...+....|+||...|+.+.|+|+...+++++.+. |+||.............|. .|+.+.
T Consensus 232 ~~ilTGG~d~~av~~d~-~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDK-PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred CcceecCCCCceEEEec-chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeee
Confidence 445566655 7778888 57788889999999999999999999999999998 7899987444444434444 599999
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C
Q 005315 251 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K 329 (702)
Q Consensus 251 fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d 329 (702)
.+|.|.||++++.+ ++....|+++|..+.........+ .+.+.+|+| ||.+|+++. |
T Consensus 311 ~h~tgeYllsAs~d----------~~w~Fsd~~~g~~lt~vs~~~s~v-----------~~ts~~fHp-DgLifgtgt~d 368 (506)
T KOG0289|consen 311 LHPTGEYLLSASND----------GTWAFSDISSGSQLTVVSDETSDV-----------EYTSAAFHP-DGLIFGTGTPD 368 (506)
T ss_pred eccCCcEEEEecCC----------ceEEEEEccCCcEEEEEeeccccc-----------eeEEeeEcC-CceEEeccCCC
Confidence 99999999999999 999999999999887665543222 244889999 999999999 9
Q ss_pred CeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEcc
Q 005315 330 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 409 (702)
Q Consensus 330 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 409 (702)
+.|+|||+.+...+.++..|.+.|..++|+.+|-+|++ ++.|+.++ +||+...+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat-----~add~~V~--lwDLRKl~------------------- 422 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLAT-----AADDGSVK--LWDLRKLK------------------- 422 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEE-----EecCCeEE--EEEehhhc-------------------
Confidence 99999999999988888889999999999999999988 55555533 33332211
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeeccc
Q 005315 410 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 489 (702)
Q Consensus 410 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 489 (702)
....+.+.. ...+.++.|.+.|++++.++. .|+||-.....
T Consensus 423 ---------------------------------n~kt~~l~~-~~~v~s~~fD~SGt~L~~~g~-----~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 423 ---------------------------------NFKTIQLDE-KKEVNSLSFDQSGTYLGIAGS-----DLQVYICKKKT 463 (506)
T ss_pred ---------------------------------ccceeeccc-cccceeEEEcCCCCeEEeecc-----eeEEEEEeccc
Confidence 111122211 336889999999999999865 45666554322
Q ss_pred CcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEEC
Q 005315 490 HAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNV 534 (702)
Q Consensus 490 ~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~ 534 (702)
..+..+..+..+ ..+.+.|....+++++++. |..++++.+
T Consensus 464 --k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm---d~~l~~~a~ 505 (506)
T KOG0289|consen 464 --KSWTEIKELADHSGLSTGVRFGEHAQYLASTSM---DAILRLYAL 505 (506)
T ss_pred --ccceeeehhhhcccccceeeecccceEEeeccc---hhheEEeec
Confidence 224456655544 5788999999999999988 888888754
No 113
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.2e-20 Score=178.12 Aligned_cols=271 Identities=13% Similarity=0.259 Sum_probs=199.8
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---EEeeccCCCcccccCCCCCCCCcccceEEEcC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 318 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~ 318 (702)
.|.+|+++.|+|.-..|++++.| ++++||.+ +|+ .+.++.....++. +..|.|
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d----------~~lrifqv-DGk~N~~lqS~~l~~fPi~-------------~a~f~p 267 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLD----------GTLRIFQV-DGKVNPKLQSIHLEKFPIQ-------------KAEFAP 267 (514)
T ss_pred CcCCceEEEecCCCceEEEecCC----------CcEEEEEe-cCccChhheeeeeccCccc-------------eeeecC
Confidence 35679999999999999999999 99999997 443 3444443333331 678999
Q ss_pred CCCc-EEEEec-CCeEEEEecCCcccccceee---ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 319 GKDK-YFAKLG-KNMISVYETESFTLIDKKSL---KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 319 ~dg~-~la~~~-d~~i~v~d~~~~~~~~~~~~---~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
+|. .+++++ ...++.||+.+.+...-... ....+..+..||++++|++ .+..+.|.++...+++.+
T Consensus 268 -~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~-------~G~~G~I~lLhakT~eli- 338 (514)
T KOG2055|consen 268 -NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAI-------AGNNGHIHLLHAKTKELI- 338 (514)
T ss_pred -CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEE-------cccCceEEeehhhhhhhh-
Confidence 998 777777 88899999988765432211 1235788999999999998 444444544433222211
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 473 (702)
..+.+ .+.|.+++|+.+|+.|+++++
T Consensus 339 ---------------------------------------------------~s~Ki---eG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 339 ---------------------------------------------------TSFKI---EGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ---------------------------------------------------heeee---ccEEeeEEEecCCcEEEEEcC
Confidence 11233 788999999999999999999
Q ss_pred CCCCCeEEEEEeecccCcCceEEEEEcCC-C--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCc------ceeeecc
Q 005315 474 DSPRPDISFYSMRTAQHAGRVSKLTTLKG-K--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL------ETMATAE 544 (702)
Q Consensus 474 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~------~~~~~~~ 544 (702)
+| .|++||++... .++.+.. + .-++++.|++|+|||+|+. .|.|.|||.++. +.+.+..
T Consensus 365 ~G---eV~v~nl~~~~------~~~rf~D~G~v~gts~~~S~ng~ylA~GS~---~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 365 TG---EVYVWNLRQNS------CLHRFVDDGSVHGTSLCISLNGSYLATGSD---SGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred Cc---eEEEEecCCcc------eEEEEeecCccceeeeeecCCCceEEeccC---cceEEEeccchhhccCCCCchhhhh
Confidence 99 99999997653 4555442 2 3478999999999999998 999999997743 2222222
Q ss_pred --cCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee------ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 545 --HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT------LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 545 --~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~------~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
...|++++|+||++.||.+|. .+++.+++-.+....++.. ..+.+++++|+|.+.+++.+.+.+.+.
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~---~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASR---VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhh---ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 257899999999999999987 3478999988765544432 457899999999999999988777653
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=8.3e-19 Score=170.88 Aligned_cols=279 Identities=13% Similarity=0.174 Sum_probs=200.7
Q ss_pred eEEeecCcCcceeeeecCCC----eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccC
Q 005315 226 AAVWGGANTFNRLMRYAHPQ----VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVG 301 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~~----v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~ 301 (702)
+.+||+. ++....++.... -..-+. .+.|++++.... ..|.+|.+...........-.+.+.
T Consensus 20 ~~~~dl~-TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~r---------p~l~vw~i~k~~~~~q~~v~Pg~v~-- 85 (476)
T KOG0646|consen 20 CIVWDLR-TGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQLKR---------PLLHVWEILKKDQVVQYIVLPGPVH-- 85 (476)
T ss_pred eeEEecC-CCceeEEecCcccccchhhhhh--chhheeeecccC---------ccccccccCchhhhhhhccccccee--
Confidence 6799999 888777775331 111122 347888877652 4688999754433331111111221
Q ss_pred CCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcE
Q 005315 302 GTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 380 (702)
Q Consensus 302 ~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 380 (702)
++.-+| +|.||+.++ .+.|++|.+.+|.++.....|...|+++.|+-||.+|++ +|.|+.+.
T Consensus 86 -----------al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiT-----gskDg~V~ 148 (476)
T KOG0646|consen 86 -----------ALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIIT-----GSKDGAVL 148 (476)
T ss_pred -----------eeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEe-----cCCCccEE
Confidence 778899 999999997 999999999999999988899999999999999999999 88888888
Q ss_pred EEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEE
Q 005315 381 VSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 460 (702)
Q Consensus 381 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 460 (702)
+|..-. ..+++... .+.....+..|.-+|+++.
T Consensus 149 vW~l~~-------------------lv~a~~~~----------------------------~~~p~~~f~~HtlsITDl~ 181 (476)
T KOG0646|consen 149 VWLLTD-------------------LVSADNDH----------------------------SVKPLHIFSDHTLSITDLQ 181 (476)
T ss_pred EEEEEe-------------------ecccccCC----------------------------CccceeeeccCcceeEEEE
Confidence 876531 01111111 0111123447788888888
Q ss_pred EeeC--CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCc
Q 005315 461 WEPK--GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 537 (702)
Q Consensus 461 ~sp~--g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~ 537 (702)
..+- ..++++++.|. ++++||+..+. .+.++. ...+++++.+|-++.+++|+. +|.|.+.++...
T Consensus 182 ig~Gg~~~rl~TaS~D~---t~k~wdlS~g~------LLlti~fp~si~av~lDpae~~~yiGt~---~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 182 IGSGGTNARLYTASEDR---TIKLWDLSLGV------LLLTITFPSSIKAVALDPAERVVYIGTE---EGKIFQNLLFKL 249 (476)
T ss_pred ecCCCccceEEEecCCc---eEEEEEeccce------eeEEEecCCcceeEEEcccccEEEecCC---cceEEeeehhcC
Confidence 7764 46899999999 99999997664 444443 557999999999999999998 999998877532
Q ss_pred c----------------e--eeecccC--ceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee---ccccEee
Q 005315 538 E----------------T--MATAEHF--MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LKDHFFQ 594 (702)
Q Consensus 538 ~----------------~--~~~~~~~--~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~---~~~~i~~ 594 (702)
. . ...+|.. .|++++.+-||..|++|+. ||.|.|||+..+++.+. ..++|+.
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~-----dg~VcvWdi~S~Q~iRtl~~~kgpVtn 324 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE-----DGKVCVWDIYSKQCIRTLQTSKGPVTN 324 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC-----CCCEEEEecchHHHHHHHhhhccccce
Confidence 1 1 1124544 8999999999999999999 99999999986644322 3366666
Q ss_pred EEEee
Q 005315 595 FLWRP 599 (702)
Q Consensus 595 ~~w~p 599 (702)
+.+.|
T Consensus 325 L~i~~ 329 (476)
T KOG0646|consen 325 LQINP 329 (476)
T ss_pred eEeec
Confidence 66644
No 115
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.85 E-value=2.8e-20 Score=173.85 Aligned_cols=273 Identities=15% Similarity=0.190 Sum_probs=205.0
Q ss_pred CCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005315 202 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 278 (702)
Q Consensus 202 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~ 278 (702)
....|.|+++. ...+++|..|. |.|||.. +...+..+ +|.+ |.|+.| |.+.|++|+.| .+|+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n-~~~c~~~L~GHtGSVLCLqy--d~rviisGSSD----------sTvr 260 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKN-SLECLKILTGHTGSVLCLQY--DERVIVSGSSD----------STVR 260 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccc-cHHHHHhhhcCCCcEEeeec--cceEEEecCCC----------ceEE
Confidence 34678899885 55789999998 8899999 77766555 4554 999998 67799999999 9999
Q ss_pred EEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccc---cceeeccCCee
Q 005315 279 IFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI---DKKSLKVENVM 354 (702)
Q Consensus 279 vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~---~~~~~~~~~v~ 354 (702)
|||+.+|+++.++-+|...+. .+.|+. .|+++++ |.++.||++.+..-+ .....|...|+
T Consensus 261 vWDv~tge~l~tlihHceaVL-------------hlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 261 VWDVNTGEPLNTLIHHCEAVL-------------HLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred EEeccCCchhhHHhhhcceeE-------------EEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 999999999999999988763 567754 6899998 999999998865422 22345777888
Q ss_pred EEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEE
Q 005315 355 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 434 (702)
Q Consensus 355 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 434 (702)
.+.|+. ++|++ +++|.++++| ++.+.+.++..+.+.-...++ +-.|+++++++.+.+ +++
T Consensus 325 vVdfd~--kyIVs-----ASgDRTikvW--~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDnt---------IRl 384 (499)
T KOG0281|consen 325 VVDFDD--KYIVS-----ASGDRTIKVW--STSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNT---------IRL 384 (499)
T ss_pred eecccc--ceEEE-----ecCCceEEEE--eccceeeehhhhcccccceeh--hccCeEEEecCCCce---------EEE
Confidence 888864 58888 7788876655 556666666666665555544 557899999999988 899
Q ss_pred EEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcC---ceEEEEEcCCC--ceeEEE
Q 005315 435 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG---RVSKLTTLKGK--QANALF 509 (702)
Q Consensus 435 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~--~v~~~~ 509 (702)
|++..... ...+.+|..-|.++.| +.+.+++|+.|| +|++||+.++.... ....+.++..+ .|..+.
T Consensus 385 wdi~~G~c---LRvLeGHEeLvRciRF--d~krIVSGaYDG---kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 385 WDIECGAC---LRVLEGHEELVRCIRF--DNKRIVSGAYDG---KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred EeccccHH---HHHHhchHHhhhheee--cCceeeeccccc---eEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 99875332 2346789999999999 678999999999 99999997654210 01112222222 455566
Q ss_pred EccCCCEEEEEeccCCCceEEEEECCCcc
Q 005315 510 WSPSGRFIVLAGLKGFNGQLEFYNVDELE 538 (702)
Q Consensus 510 ~spdg~~l~~~~~~~~dg~v~i~d~~~~~ 538 (702)
| |...+++++. |.+|.|||+.++-
T Consensus 457 F--D~fqIvsssH---ddtILiWdFl~~~ 480 (499)
T KOG0281|consen 457 F--DEFQIISSSH---DDTILIWDFLNGP 480 (499)
T ss_pred e--cceEEEeccC---CCeEEEEEcCCCC
Confidence 6 5667888887 8999999998653
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.5e-18 Score=160.63 Aligned_cols=271 Identities=13% Similarity=0.150 Sum_probs=188.5
Q ss_pred CcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005315 203 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 280 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vw 280 (702)
...|+.+.|+|.+..|+.++.|| +++|++. .......+.|.. +.+++|.+ ...+++|+.| +.|+++
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~-~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~d----------g~vr~~ 80 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVP-ANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLD----------GQVRRY 80 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEecc-chhhhhheecCCceeeeeccC-CceEEEeccC----------ceEEEE
Confidence 46799999999999999999999 8999999 777777887765 99999987 5678999999 999999
Q ss_pred EccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeC
Q 005315 281 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWS 359 (702)
Q Consensus 281 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s 359 (702)
|+.++.....- .|...+. ++..++ -...+++++ |++|++||.......... -....|.++.
T Consensus 81 Dln~~~~~~ig-th~~~i~-------------ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~-- 142 (323)
T KOG1036|consen 81 DLNTGNEDQIG-THDEGIR-------------CIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMD-- 142 (323)
T ss_pred EecCCcceeec-cCCCceE-------------EEEeec-cCCeEEEcccCccEEEEecccccccccc-ccCceEEEEe--
Confidence 99888765433 3433332 788888 777788888 999999998852222111 0111222222
Q ss_pred CCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEec
Q 005315 360 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 439 (702)
Q Consensus 360 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 439 (702)
-.|..|++++.+.. +.+|+++.
T Consensus 143 -------------------------------------------------v~g~~LvVg~~~r~---------v~iyDLRn 164 (323)
T KOG1036|consen 143 -------------------------------------------------VSGNRLVVGTSDRK---------VLIYDLRN 164 (323)
T ss_pred -------------------------------------------------ccCCEEEEeecCce---------EEEEEccc
Confidence 23344444443333 45566555
Q ss_pred CCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc--cCcCceEEEEEcCC-----CceeEEEEcc
Q 005315 440 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA--QHAGRVSKLTTLKG-----KQANALFWSP 512 (702)
Q Consensus 440 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~--~~~~~~~~~~~~~~-----~~v~~~~~sp 512 (702)
...+... .-..-+..+.++++-|++.-+++++-+|.. .|.++|...- .....+++.....+ .+|++++|+|
T Consensus 165 ~~~~~q~-reS~lkyqtR~v~~~pn~eGy~~sSieGRV-avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 165 LDEPFQR-RESSLKYQTRCVALVPNGEGYVVSSIEGRV-AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccchhhh-ccccceeEEEEEEEecCCCceEEEeecceE-EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 4433211 111126788999999998889999989821 3344554310 11111222222221 2799999999
Q ss_pred CCCEEEEEeccCCCceEEEEECCCcceeeeccc--CceeeeEECCCCCEEEEEEee
Q 005315 513 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--FMATDVEWDPTGRYVATAVTS 566 (702)
Q Consensus 513 dg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~--~~i~~~~~spdg~~l~t~s~~ 566 (702)
-...+++|+. ||.|.+||+.+.+.+...+. ..|..++|+.||..||++++.
T Consensus 243 ~~~tfaTgGs---DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 243 IHGTFATGGS---DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ccceEEecCC---CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 9999999998 99999999998888877665 458899999999999999884
No 117
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=1.1e-18 Score=185.07 Aligned_cols=229 Identities=14% Similarity=0.221 Sum_probs=163.8
Q ss_pred cccCCCcccceEEECC-CCcEEEEEeCCc-eEEeecCcCc------ceeeee-cCC-CeeEEEecCCC-CEEEEEcCCCC
Q 005315 198 VYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTF------NRLMRY-AHP-QVKLIDFSPGE-KYLVTYSSHEP 266 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~------~~~~~~-~~~-~v~~i~fSpdg-~~l~t~s~d~~ 266 (702)
.+.+|...|++++|+| ++.+||+++.|+ |+||++.... ..+..+ .|. .|.+++|+|++ .+|++++.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-- 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-- 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC--
Confidence 4789999999999999 899999999999 8899987221 123333 343 59999999986 699999999
Q ss_pred CCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccc
Q 005315 267 SNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 345 (702)
Q Consensus 267 ~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~ 345 (702)
++|+|||+.+++.+..+.+|...+. +++|+| +|.+|++++ |+.|+|||+.+++.+..
T Consensus 148 --------gtVrIWDl~tg~~~~~l~~h~~~V~-------------sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 148 --------MVVNVWDVERGKAVEVIKCHSDQIT-------------SLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred --------CEEEEEECCCCeEEEEEcCCCCceE-------------EEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 9999999999999999988877653 799999 999999999 99999999998887665
Q ss_pred eeeccCC-eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc-eeeeeeeccc-ccceeEEccCCCEEEEEEc-cc
Q 005315 346 KSLKVEN-VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSV-SDCKMYWQSSGDYLAVKVD-RY 421 (702)
Q Consensus 346 ~~~~~~~-v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~~g~~l~~~~~-~~ 421 (702)
...|... +..+.|+|++..|++... +......|.+|++.... ++........ ......|++++..|++++. ++
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~---s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg 282 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGC---SKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG 282 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEec---CCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC
Confidence 5555543 456789998877765210 11223345556654432 2222222211 2223468999999988763 55
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC
Q 005315 422 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 464 (702)
Q Consensus 422 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 464 (702)
. +++|++.... ....... .+..++..++|.|.
T Consensus 283 ~---------Iriwdl~~~~-~~~~~~~-~s~~~~~g~~~~pk 314 (493)
T PTZ00421 283 N---------IRCFELMNER-LTFCSSY-SSVEPHKGLCMMPK 314 (493)
T ss_pred e---------EEEEEeeCCc-eEEEeec-cCCCCCcceEeccc
Confidence 5 8999998643 2222222 34556777888874
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=166.80 Aligned_cols=285 Identities=15% Similarity=0.199 Sum_probs=218.2
Q ss_pred CCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCc
Q 005315 194 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPR 270 (702)
Q Consensus 194 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~ 270 (702)
.....|.+|...|+.|+-......+.+++.|. ..||.++ ++.++.++ +|.+ |++|.|++.+..+++++.|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD------ 211 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLE-SGACLATYTGHTGSVNSIKFHNSGLLLLTASGD------ 211 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeec-cccceeeecccccceeeEEeccccceEEEccCC------
Confidence 34556789999999988877777899999998 5699999 89988888 4554 9999999999999999999
Q ss_pred CCCccEEEEEEc------cC------------------------------C----cEEeeccCCCcccccCCCCCCCCcc
Q 005315 271 DANRVVINIFDV------RT------------------------------G----KVMRDFKGSADEFAVGGTGGVAGVS 310 (702)
Q Consensus 271 ~~~~~~i~vwd~------~~------------------------------g----~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (702)
++..||.. .. | .++..|.+|...+.
T Consensus 212 ----~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~----------- 276 (481)
T KOG0300|consen 212 ----ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS----------- 276 (481)
T ss_pred ----cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE-----------
Confidence 67777752 11 0 12334555554442
Q ss_pred cceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 311 WPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 311 w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
+..|-. .|+.+++++ |.+..+||++++.++.....|....+.++-+|..+++++ .+.|.+.++|.|.
T Consensus 277 --a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvT-----sSrDtTFRLWDFR---- 344 (481)
T KOG0300|consen 277 --ACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVT-----SSRDTTFRLWDFR---- 344 (481)
T ss_pred --ehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEE-----eccCceeEeccch----
Confidence 567888 899999999 999999999999999888888777777787887777776 5566665555443
Q ss_pred ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEE
Q 005315 390 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 469 (702)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 469 (702)
+. ++ ...-+.+|.+.|++..|.-+ ..++
T Consensus 345 -------------------------------------------------ea-I~-sV~VFQGHtdtVTS~vF~~d-d~vV 372 (481)
T KOG0300|consen 345 -------------------------------------------------EA-IQ-SVAVFQGHTDTVTSVVFNTD-DRVV 372 (481)
T ss_pred -------------------------------------------------hh-cc-eeeeecccccceeEEEEecC-Ccee
Confidence 11 00 11235689999999999854 5688
Q ss_pred EEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee------e
Q 005315 470 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA------T 542 (702)
Q Consensus 470 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~------~ 542 (702)
+++.|. +|++||++.... ++.++. ..+++.++.|..+..|++--. +..|++||++..++-. .
T Consensus 373 SgSDDr---TvKvWdLrNMRs-----plATIRtdS~~NRvavs~g~~iIAiPhD---NRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 373 SGSDDR---TVKVWDLRNMRS-----PLATIRTDSPANRVAVSKGHPIIAIPHD---NRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred ecCCCc---eEEEeeeccccC-----cceeeecCCccceeEeecCCceEEeccC---CceEEEEecCCCccccCCccccc
Confidence 888888 999999987654 566665 457899999998889988876 8899999999654432 3
Q ss_pred cccCceeeeEECCCCC--EEEEEEeecccccccEEEEEec
Q 005315 543 AEHFMATDVEWDPTGR--YVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 543 ~~~~~i~~~~~spdg~--~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+|..+|++++|.-+-- -|++++. |..+.=|+++
T Consensus 442 gHrRMV~c~AW~eehp~cnLftcGF-----DR~v~gW~in 476 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACNLFTCGF-----DRMVAGWKIN 476 (481)
T ss_pred ccceeeeeeeccccCcccccccccc-----cceeeeeEec
Confidence 6778999999986543 5778888 8889889876
No 119
>PTZ00420 coronin; Provisional
Probab=99.84 E-value=2e-18 Score=183.72 Aligned_cols=237 Identities=11% Similarity=0.128 Sum_probs=157.9
Q ss_pred cEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC-CcEEEEec-CCeEEEEecCCccc-c-------c
Q 005315 275 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFTL-I-------D 344 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d-g~~la~~~-d~~i~v~d~~~~~~-~-------~ 344 (702)
+.|++|+......+..+.+|...+. +++|+| + +.+||+++ |+.|+||+++++.. . .
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~-------------~lafsP-~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~ 119 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSIL-------------DLQFNP-CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQC 119 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEE-------------EEEEcC-CCCCEEEEEeCCCeEEEEECCCCCccccccccceE
Confidence 7899999877778889999987764 799999 7 78999999 99999999986432 1 1
Q ss_pred ceeeccCCeeEEEeCCCCCeE-EEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccc
Q 005315 345 KKSLKVENVMDFSWSPTDPII-SLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 423 (702)
Q Consensus 345 ~~~~~~~~v~~~~~sp~~~~l-a~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 423 (702)
....|...|.+++|+|++..+ ++ ++.|+.++||
T Consensus 120 ~L~gH~~~V~sVaf~P~g~~iLaS-----gS~DgtIrIW----------------------------------------- 153 (568)
T PTZ00420 120 ILKGHKKKISIIDWNPMNYYIMCS-----SGFDSFVNIW----------------------------------------- 153 (568)
T ss_pred EeecCCCcEEEEEECCCCCeEEEE-----EeCCCeEEEE-----------------------------------------
Confidence 123355567777777776544 34 4445544443
Q ss_pred ccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC
Q 005315 424 TKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK 503 (702)
Q Consensus 424 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 503 (702)
++..... ...+ .|...|.+++|+|+|.+|++++.|+ .|+|||++++. .+.++.+|
T Consensus 154 ------------Dl~tg~~---~~~i-~~~~~V~SlswspdG~lLat~s~D~---~IrIwD~Rsg~------~i~tl~gH 208 (568)
T PTZ00420 154 ------------DIENEKR---AFQI-NMPKKLSSLKWNIKGNLLSGTCVGK---HMHIIDPRKQE------IASSFHIH 208 (568)
T ss_pred ------------ECCCCcE---EEEE-ecCCcEEEEEECCCCCEEEEEecCC---EEEEEECCCCc------EEEEEecc
Confidence 3322111 0112 2356799999999999999998888 99999998754 44555544
Q ss_pred c--e-----eEEEEccCCCEEEEEeccC-CCceEEEEECCC-cceeeec-cc---CceeeeEECCCCCEEEEEEeecccc
Q 005315 504 Q--A-----NALFWSPSGRFIVLAGLKG-FNGQLEFYNVDE-LETMATA-EH---FMATDVEWDPTGRYVATAVTSVHEM 570 (702)
Q Consensus 504 ~--v-----~~~~~spdg~~l~~~~~~~-~dg~v~i~d~~~-~~~~~~~-~~---~~i~~~~~spdg~~l~t~s~~~~~~ 570 (702)
. + ....|++++.+|++++... .++.|+|||+++ .+.+... .+ +.+......++|.++++|+.
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG----- 283 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG----- 283 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC-----
Confidence 2 2 2234579999999987621 124899999985 3444331 11 22222333556889999988
Q ss_pred cccEEEEEeccceeeee----ccccEeeEEEeeCC
Q 005315 571 ENGFNIWSFNGKLLYRT----LKDHFFQFLWRPRP 601 (702)
Q Consensus 571 d~~v~iw~~~g~~l~~~----~~~~i~~~~w~p~~ 601 (702)
|+.|++|++....+... +..++..++|.|..
T Consensus 284 D~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 99999999864433222 22456667777754
No 120
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.84 E-value=6e-19 Score=187.13 Aligned_cols=270 Identities=13% Similarity=0.198 Sum_probs=211.0
Q ss_pred CCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeee-e-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR-Y-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 276 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~-~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~ 276 (702)
.+...+.|.+|. +.++++++.++ +.+|+.. .+..+.. + +|. +|.+++|...+.+|++|+.| .+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~-~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D----------~t 272 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLN-NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTD----------KT 272 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecc-cceEEEeeccCCCCCceeEEEecCCCEEEEEecC----------Cc
Confidence 356778899998 56788888888 6699999 6655555 5 444 59999999888999999999 99
Q ss_pred EEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeE
Q 005315 277 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMD 355 (702)
Q Consensus 277 i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~ 355 (702)
++|||+.+|.+...+.+|...+. ..+- .+.++++++ |.+|++|+++++..+.....|...|.+
T Consensus 273 ~rvWd~~sg~C~~~l~gh~stv~---------------~~~~-~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~ 336 (537)
T KOG0274|consen 273 ERVWDCSTGECTHSLQGHTSSVR---------------CLTI-DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNC 336 (537)
T ss_pred EEeEecCCCcEEEEecCCCceEE---------------EEEc-cCceEeeccCCceEEEEeccCcceEEEeccccccEEE
Confidence 99999999999999999987762 3333 556777777 999999999999888777668888999
Q ss_pred EEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEE
Q 005315 356 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF 435 (702)
Q Consensus 356 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~ 435 (702)
+..+ +.++++ |+.++.++||.+. ..+
T Consensus 337 v~~~--~~~lvs-----gs~d~~v~VW~~~--~~~--------------------------------------------- 362 (537)
T KOG0274|consen 337 VQLD--EPLLVS-----GSYDGTVKVWDPR--TGK--------------------------------------------- 362 (537)
T ss_pred EEec--CCEEEE-----EecCceEEEEEhh--hce---------------------------------------------
Confidence 9887 667776 6667766655432 111
Q ss_pred EEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCC
Q 005315 436 RIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGR 515 (702)
Q Consensus 436 ~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 515 (702)
....+.+|...|.++.+.+. .++++++.|+ .|++||+++.. .++.++.++.-..-.....++
T Consensus 363 ---------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~---~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~~~~ 424 (537)
T KOG0274|consen 363 ---------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT---TIKVWDLRTKR-----KCIHTLQGHTSLVSSLLLRDN 424 (537)
T ss_pred ---------eeeeecCCcceEEEEEecCc-ceEEeeeecc---ceEeecCCchh-----hhhhhhcCCcccccccccccc
Confidence 11235688999999988665 8899999998 99999998762 267777777543344556788
Q ss_pred EEEEEeccCCCceEEEEECCCcceeeec---ccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 516 FIVLAGLKGFNGQLEFYNVDELETMATA---EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 516 ~l~~~~~~~~dg~v~i~d~~~~~~~~~~---~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
+|++++. |++|++||..+++++... +...++.+++. -..+++++. |+.+++||+..
T Consensus 425 ~Lvs~~a---D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~-----~~~~~l~dl~~ 483 (537)
T KOG0274|consen 425 FLVSSSA---DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD-----DGSVKLWDLRS 483 (537)
T ss_pred eeEeccc---cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec-----CCeeEEEeccc
Confidence 9999998 999999999998887753 34777777776 356777777 89999999873
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=1.8e-19 Score=176.15 Aligned_cols=263 Identities=14% Similarity=0.233 Sum_probs=203.3
Q ss_pred ceEEEEeCCceEEEecCCCCC--CCccccc--CCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceee--eec--C
Q 005315 173 DQFVIRSGTDTEVLWNDARHL--KPEPVYK--RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM--RYA--H 243 (702)
Q Consensus 173 ~~~~~~~~~~~~~~w~~~~~~--~~~~~~~--~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~--~~~--~ 243 (702)
...+.++|.+.+.+|+....+ .|+..+. .....++++..+|||+.|++|+.-. +.|||+. .-.... .+. .
T Consensus 431 trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA-apTprikaeltssa 509 (705)
T KOG0639|consen 431 TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA-APTPRIKAELTSSA 509 (705)
T ss_pred cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc-CCCcchhhhcCCcc
Confidence 456778889999999984332 2333332 2345789999999999999999866 7899987 433322 222 3
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
+.++.++.|||.+..+++..| |.|.|||+.+...++.|++|.+... |+..|+ ||..
T Consensus 510 paCyALa~spDakvcFsccsd----------GnI~vwDLhnq~~VrqfqGhtDGas-------------cIdis~-dGtk 565 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSD----------GNIAVWDLHNQTLVRQFQGHTDGAS-------------CIDISK-DGTK 565 (705)
T ss_pred hhhhhhhcCCccceeeeeccC----------CcEEEEEcccceeeecccCCCCCce-------------eEEecC-CCce
Confidence 458899999999999999999 9999999999999999999988764 899999 9999
Q ss_pred EEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccccc
Q 005315 324 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 402 (702)
Q Consensus 324 la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 402 (702)
|-+++ |++|+-||+.+++.+....+. ..|.++..+|++.+|++ +-....+++......+ ..+..++....
T Consensus 566 lWTGGlDntvRcWDlregrqlqqhdF~-SQIfSLg~cP~~dWlav-------GMens~vevlh~skp~-kyqlhlheScV 636 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQQHDFS-SQIFSLGYCPTGDWLAV-------GMENSNVEVLHTSKPE-KYQLHLHESCV 636 (705)
T ss_pred eecCCCccceeehhhhhhhhhhhhhhh-hhheecccCCCccceee-------ecccCcEEEEecCCcc-ceeecccccEE
Confidence 99999 999999999988776554332 34899999999999998 5555567776654332 22334455666
Q ss_pred ceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEE
Q 005315 403 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 482 (702)
Q Consensus 403 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 482 (702)
..+.|++.|++++....++....|.+-.+..||...+ ...|.++.+|-|.++++++++|. ...+
T Consensus 637 LSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-------------~SsVlsCDIS~ddkyIVTGSGdk---kATV 700 (705)
T KOG0639|consen 637 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-------------SSSVLSCDISFDDKYIVTGSGDK---KATV 700 (705)
T ss_pred EEEEecccCceeeecCchhhhhhccCccccceeeccc-------------cCcceeeeeccCceEEEecCCCc---ceEE
Confidence 7788999999999988887755555555555555443 67899999999999999999997 6677
Q ss_pred EEe
Q 005315 483 YSM 485 (702)
Q Consensus 483 ~d~ 485 (702)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 765
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.2e-18 Score=161.58 Aligned_cols=241 Identities=15% Similarity=0.155 Sum_probs=182.1
Q ss_pred CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cCCC-eeEEEecCCCC--EEEEEcCCCCCCC
Q 005315 195 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEK--YLVTYSSHEPSNP 269 (702)
Q Consensus 195 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~fSpdg~--~l~t~s~d~~~~~ 269 (702)
|...++.|..++++++.| |.|+|+|+.|- |.|||.. ....+..+ .|.+ |+++.|.++-. .|++|+.|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~-k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD----- 106 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMR-KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD----- 106 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEecc-chhhhcceeccccceEEEEecCCcchhheeeecCC-----
Confidence 455678999999999987 89999999988 8899999 66666555 4554 99999999876 89999999
Q ss_pred cCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceee
Q 005315 270 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 348 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~ 348 (702)
|.|.+|++....++.+++.|...++ .++..| .+++-.+.+ |+.+++|++-.|+......+
T Consensus 107 -----G~i~iw~~~~W~~~~slK~H~~~Vt-------------~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L 167 (362)
T KOG0294|consen 107 -----GHIIIWRVGSWELLKSLKAHKGQVT-------------DLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNL 167 (362)
T ss_pred -----CcEEEEEcCCeEEeeeecccccccc-------------eeEecC-CCceEEEEcCCceeeeehhhcCccceeecc
Confidence 9999999999999999999988875 789999 999877777 99999999998875544333
Q ss_pred ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccc
Q 005315 349 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 428 (702)
Q Consensus 349 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 428 (702)
... ...+.|+|.|.++++.. ..+|-+|.+..-..+...... .....+.| -++.+|+++.++..
T Consensus 168 ~~~-at~v~w~~~Gd~F~v~~--------~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~-l~~~~L~vG~d~~~------ 230 (362)
T KOG0294|consen 168 KNK-ATLVSWSPQGDHFVVSG--------RNKIDIYQLDNASVFREIENP-KRILCATF-LDGSELLVGGDNEW------ 230 (362)
T ss_pred CCc-ceeeEEcCCCCEEEEEe--------ccEEEEEecccHhHhhhhhcc-ccceeeee-cCCceEEEecCCce------
Confidence 322 34599999999888622 224666666554433322211 11222223 35678888888765
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceeEEEE--eeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 429 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAW--EPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 429 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~--sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
+.+|+-+.. . ....+.+|...|.++.+ .|++.+|++++.|| .|++||++..
T Consensus 231 ---i~~~D~ds~-~--~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG---~I~vWd~~~~ 283 (362)
T KOG0294|consen 231 ---ISLKDTDSD-T--PLTEFLAHENRVKDIASYTNPEHEYLVTASSDG---FIKVWDIDME 283 (362)
T ss_pred ---EEEeccCCC-c--cceeeecchhheeeeEEEecCCceEEEEeccCc---eEEEEEcccc
Confidence 667776542 2 22456689999999874 56889999999999 9999999643
No 123
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=1.5e-18 Score=174.23 Aligned_cols=157 Identities=15% Similarity=0.389 Sum_probs=120.5
Q ss_pred CCceeEEEEee-CCcEEEEEEcCCCCCeEEEEEeecccCcC---ceEEEEEcCCCceeEEEEccC-CCEEEEEeccCCCc
Q 005315 453 NDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAG---RVSKLTTLKGKQANALFWSPS-GRFIVLAGLKGFNG 527 (702)
Q Consensus 453 ~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~dg 527 (702)
...|++++|.| |..+||+++.|+ .|++|.+..+.... ....+.+.++..|+++.|+|- ...|++++. |.
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg---~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy---d~ 700 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDG---QINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY---DS 700 (1012)
T ss_pred CceeeecccCCCChHHeeecccCc---eEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc---cc
Confidence 45789999999 888999999999 99999997654321 123444555668999999995 457788888 99
Q ss_pred eEEEEECCCcceee--ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc--eeeee---ccccEeeEEEeeC
Q 005315 528 QLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK--LLYRT---LKDHFFQFLWRPR 600 (702)
Q Consensus 528 ~v~i~d~~~~~~~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~--~l~~~---~~~~i~~~~w~p~ 600 (702)
+|++||+.+++... .+|...|.+++|||||+.+|+.+. |+.+++|+-... .++.- ...+-..+.|--+
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK-----Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacd 775 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK-----DGTLRVYEPRSREQPVYEGKGPVGTRGARILWACD 775 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec-----CceEEEeCCCCCCCccccCCCCccCcceeEEEEec
Confidence 99999999876654 478899999999999999999999 999999997633 23322 1145566899999
Q ss_pred CCCCCChhhHHHHHHHHHHH
Q 005315 601 PPSFLTPEKEEEIAKNLKKY 620 (702)
Q Consensus 601 ~~~l~s~~~d~~i~~~l~~~ 620 (702)
|++++..+-|+.-.+.+.-|
T Consensus 776 gr~viv~Gfdk~SeRQv~~Y 795 (1012)
T KOG1445|consen 776 GRIVIVVGFDKSSERQVQMY 795 (1012)
T ss_pred CcEEEEecccccchhhhhhh
Confidence 99998877665554444333
No 124
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.5e-19 Score=160.07 Aligned_cols=286 Identities=15% Similarity=0.233 Sum_probs=206.9
Q ss_pred EEeCCHHHHHHHHHHhCCCccCCeeEEEEEeccCcccccCCCCCCCCCCCCCCCCCccccccccCCCCCceEEEEeCCce
Q 005315 104 IEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDT 183 (702)
Q Consensus 104 v~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (702)
|.|+=-.+-+.|+..-..+.+.+..+|.+-...+-..+.. ...|.-.+-|.+....+...+|.++..||+.
T Consensus 14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e---------~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGS 84 (311)
T KOG0277|consen 14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE---------CQSYDTEDGLFDVAWSENHENQVIAASGDGS 84 (311)
T ss_pred eEecccccchhheeehhhcccccCceEEEEecCCCCCeEE---------EEeeecccceeEeeecCCCcceEEEEecCce
Confidence 4444444455666667777777777777766654333321 1223333455666666788899999999999
Q ss_pred EEEecCCCCCCCcccccCCCcccceEEECCC-CcEEEEEeCCc-eEEeecCcCcceeeeec-CCC-eeEEEecCC-CCEE
Q 005315 184 EVLWNDARHLKPEPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLIDFSPG-EKYL 258 (702)
Q Consensus 184 ~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~fSpd-g~~l 258 (702)
..+|+.+....|+..++.|...|.++.|++- +..+++++-|+ |+||+.. -...+.+|. |.. |....|||- ...+
T Consensus 85 Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 85 LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEeecCCccEEEEEecCCCCCCeE
Confidence 9999998888999999999999999999985 55677778888 8899998 777777773 444 999999995 6889
Q ss_pred EEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEec
Q 005315 259 VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYET 337 (702)
Q Consensus 259 ~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~ 337 (702)
+++|.| +++++||++.......+..|...+. ++.|+.-+...+++++ |+.|++||+
T Consensus 164 as~Sgd----------~~l~lwdvr~~gk~~~i~ah~~Eil-------------~cdw~ky~~~vl~Tg~vd~~vr~wDi 220 (311)
T KOG0277|consen 164 ASASGD----------GTLRLWDVRSPGKFMSIEAHNSEIL-------------CCDWSKYNHNVLATGGVDNLVRGWDI 220 (311)
T ss_pred EEccCC----------ceEEEEEecCCCceeEEEeccceeE-------------eecccccCCcEEEecCCCceEEEEeh
Confidence 999999 9999999976544444777775543 6788873566788888 999999999
Q ss_pred CCccc-ccceeeccCCeeEEEeCCCC-CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEE
Q 005315 338 ESFTL-IDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLA 415 (702)
Q Consensus 338 ~~~~~-~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 415 (702)
...+. +.....|.-.|+.+.|||.. ..||+ ++-|.+.+||.+..+..
T Consensus 221 r~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaS-----asYDmT~riw~~~~~ds-------------------------- 269 (311)
T KOG0277|consen 221 RNLRTPLFELNGHGLAVRKVKFSPHHASLLAS-----ASYDMTVRIWDPERQDS-------------------------- 269 (311)
T ss_pred hhccccceeecCCceEEEEEecCcchhhHhhh-----ccccceEEecccccchh--------------------------
Confidence 87652 32333444458999999975 45666 66777777665432110
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCCCCCeEEEEEe
Q 005315 416 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSM 485 (702)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~ 485 (702)
.+ .....|..-+..+.||+ ++.++|.++-|. .++||+.
T Consensus 270 ---------------------------~~--e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe---~l~Vw~p 308 (311)
T KOG0277|consen 270 ---------------------------AI--ETVDHHTEFVCGLDWSLFDPGQVASTGWDE---LLYVWNP 308 (311)
T ss_pred ---------------------------hh--hhhhccceEEeccccccccCceeeeccccc---ceeeecc
Confidence 00 01124566777888888 677899988898 8999984
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.3e-18 Score=180.79 Aligned_cols=268 Identities=17% Similarity=0.265 Sum_probs=193.9
Q ss_pred CCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCc-ceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF-NRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 276 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~-~~~~~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~ 276 (702)
.|+..-+.|+|.|+|.+|++++.++ |++|+.. .. ..-..+. +. .|.+++- ++.+|++++.+ ++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~-sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~----------~t 77 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTN-SDEEEPETIDISGELVSSIAC--YSNHFLTGSEQ----------NT 77 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecC-CcccCCchhhccCceeEEEee--cccceEEeecc----------ce
Confidence 5666678899999999999999999 8899876 33 2222222 22 2555554 56699999999 99
Q ss_pred EEEEEccCCc---EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCC
Q 005315 277 INIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVEN 352 (702)
Q Consensus 277 i~vwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~ 352 (702)
|.+|...++. .+..|..+.. +++++. +|+++|.++ |-.|++-++.+.........|.+.
T Consensus 78 v~~y~fps~~~~~iL~Rftlp~r----------------~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap 140 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFTLPIR----------------DLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP 140 (933)
T ss_pred EEEeeCCCCCccceeeeeeccce----------------EEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence 9999998775 3555554432 679999 999999999 889999999988877777788899
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccE
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 432 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 432 (702)
|.++.++|.+++||+ .+.++.++|| ++..+........ + .++..
T Consensus 141 Vl~l~~~p~~~fLAv-----ss~dG~v~iw--~~~~~~~~~tl~~--v-------~k~n~-------------------- 184 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAV-----SSCDGKVQIW--DLQDGILSKTLTG--V-------DKDNE-------------------- 184 (933)
T ss_pred eeeeeEcCCCCEEEE-----EecCceEEEE--Ecccchhhhhccc--C-------Ccccc--------------------
Confidence 999999999999999 5566655554 4433322111110 0 00000
Q ss_pred EEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC----CCceeEE
Q 005315 433 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----GKQANAL 508 (702)
Q Consensus 433 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~v~~~ 508 (702)
... ...+..++|+|+|..|++...++ .|++|+..+.. ....+. ...+..+
T Consensus 185 --------------~~~---s~i~~~~aW~Pk~g~la~~~~d~---~Vkvy~r~~we------~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 185 --------------FIL---SRICTRLAWHPKGGTLAVPPVDN---TVKVYSRKGWE------LQFKLRDKLSSSKFSDL 238 (933)
T ss_pred --------------ccc---cceeeeeeecCCCCeEEeeccCC---eEEEEccCCce------eheeecccccccceEEE
Confidence 001 34566789999988888888888 89999986544 333333 2247889
Q ss_pred EEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEe
Q 005315 509 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 509 ~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
.|||+|+|||+++. +|.|.|||.++... ......|.+++|-|++.-|-....
T Consensus 239 ~wsPnG~YiAAs~~---~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 239 QWSPNGKYIAASTL---DGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred EEcCCCcEEeeecc---CCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEee
Confidence 99999999999998 99999999997332 233467999999999876554444
No 126
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=1.2e-17 Score=168.65 Aligned_cols=270 Identities=14% Similarity=0.273 Sum_probs=184.7
Q ss_pred cccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceee
Q 005315 161 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 239 (702)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 239 (702)
.+++..+-|+|. |+++..|+... +++. ..+.....+++|..+|+||+||.||+.+|+|+.|. |+||+.. .+-+.
T Consensus 14 ci~d~afkPDGs-qL~lAAg~rll-iyD~-ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k--lEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGT-QLILAAGSRLL-VYDT-SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK--LEGIL 88 (1081)
T ss_pred chheeEECCCCc-eEEEecCCEEE-EEeC-CCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc--cccee
Confidence 355677778887 45666666554 5665 57888899999999999999999999999999999 7899987 55667
Q ss_pred eecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcC
Q 005315 240 RYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 318 (702)
Q Consensus 240 ~~~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~ 318 (702)
++.|.+ |.|+.|+|....|++++-. ..-+|...... +...+.... ..+++|..
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs-----------dFglWS~~qK~-V~K~kss~R--------------~~~CsWtn 142 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS-----------DFGLWSPEQKS-VSKHKSSSR--------------IICCSWTN 142 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh-----------hccccChhhhh-HHhhhhhee--------------EEEeeecC
Confidence 777775 9999999999999999876 35588753322 222221111 11689999
Q ss_pred CCCcEEEEec-CCeEEEEecCCcc--cccceeeccCCeeEEEeCCCC-----CeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 319 GKDKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPTD-----PIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 319 ~dg~~la~~~-d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~sp~~-----~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
||+|++.+- +|+|.|-+...-. .+...-...++|.+++|+|.. ..+++ .-.+++.. .+.+....
T Consensus 143 -DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV-----~DW~qTLS--Fy~LsG~~ 214 (1081)
T KOG1538|consen 143 -DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV-----ADWGQTLS--FYQLSGKQ 214 (1081)
T ss_pred -CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE-----EeccceeE--EEEeccee
Confidence 999999998 9999988644221 122222345679999999973 34554 22233332 33322211
Q ss_pred eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEE
Q 005315 391 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 470 (702)
Q Consensus 391 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 470 (702)
.-..++ .....+.+.+-++|.|++++..++. +.+|.-. ++.. -++......|.+++..|++++++.
T Consensus 215 Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~---------L~~fTR~--GvrL--GTvg~~D~WIWtV~~~PNsQ~v~~ 280 (1081)
T KOG1538|consen 215 IGKDRA-LNFDPCCISYFTNGEYILLGGSDKQ---------LSLFTRD--GVRL--GTVGEQDSWIWTVQAKPNSQYVVV 280 (1081)
T ss_pred eccccc-CCCCchhheeccCCcEEEEccCCCc---------eEEEeec--CeEE--eeccccceeEEEEEEccCCceEEE
Confidence 111222 3345566778899999999988765 5555432 2211 112123678999999999999999
Q ss_pred EEcCCCCCeEEEEEee
Q 005315 471 IHGDSPRPDISFYSMR 486 (702)
Q Consensus 471 ~~~d~~~~~v~i~d~~ 486 (702)
|..|| +|.-|++-
T Consensus 281 GCqDG---TiACyNl~ 293 (1081)
T KOG1538|consen 281 GCQDG---TIACYNLI 293 (1081)
T ss_pred EEccC---eeehhhhH
Confidence 99998 77766653
No 127
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.4e-18 Score=172.08 Aligned_cols=296 Identities=15% Similarity=0.201 Sum_probs=208.0
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCC-eeEEEecCCCC--EEEEEcCCC--CCCC-
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEK--YLVTYSSHE--PSNP- 269 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg~--~l~t~s~d~--~~~~- 269 (702)
..|.+|++.|.|++..|.|.+||+|+.+| ++||.+. ++.++.++...+ |.||+|+|.+. .||++-... ..++
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~-TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIA-TGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEee-cceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 45789999999999999999999999999 8899999 999999988765 99999999875 344443331 0000
Q ss_pred -------------------cCCCccEEEEEEccCCc----EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEE
Q 005315 270 -------------------RDANRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 326 (702)
Q Consensus 270 -------------------~~~~~~~i~vwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~ 326 (702)
.......+..|.-.... -++..-.|...+ + .+.|+. .|.|||+
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i--------~-----~vtWHr-kGDYlat 538 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI--------R-----QVTWHR-KGDYLAT 538 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc--------c-----eeeeec-CCceEEE
Confidence 01111234444321100 011111121111 1 689999 9999998
Q ss_pred ec----CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccccc
Q 005315 327 LG----KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 402 (702)
Q Consensus 327 ~~----d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 402 (702)
.. ...|.|+++........+....+.|..+.|+|...+|.+.+ .. .|.+|++.....+....-+.-..
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT------q~--~vRiYdL~kqelvKkL~tg~kwi 610 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT------QR--SVRIYDLSKQELVKKLLTGSKWI 610 (733)
T ss_pred eccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe------cc--ceEEEehhHHHHHHHHhcCCeee
Confidence 87 36789999987665544444455699999999998888732 22 35667766544333222222333
Q ss_pred ceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEE
Q 005315 403 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 482 (702)
Q Consensus 403 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 482 (702)
..|+.+|.|..|++++.++. +..|+++....|... +.-|...++++++++.-..||+++.|+ ++.+
T Consensus 611 S~msihp~GDnli~gs~d~k---------~~WfDldlsskPyk~--lr~H~~avr~Va~H~ryPLfas~sdDg---tv~V 676 (733)
T KOG0650|consen 611 SSMSIHPNGDNLILGSYDKK---------MCWFDLDLSSKPYKT--LRLHEKAVRSVAFHKRYPLFASGSDDG---TVIV 676 (733)
T ss_pred eeeeecCCCCeEEEecCCCe---------eEEEEcccCcchhHH--hhhhhhhhhhhhhccccceeeeecCCC---cEEE
Confidence 45677999999999988876 788999877766644 445889999999999999999999999 7777
Q ss_pred EEeec---ccCcCceEEEEEcCCCc------eeEEEEccCCCEEEEEeccCCCceEEEE
Q 005315 483 YSMRT---AQHAGRVSKLTTLKGKQ------ANALFWSPSGRFIVLAGLKGFNGQLEFY 532 (702)
Q Consensus 483 ~d~~~---~~~~~~~~~~~~~~~~~------v~~~~~spdg~~l~~~~~~~~dg~v~i~ 532 (702)
|.-.- -..+.-+.+++.+.+|. |-...|+|..-+|++++. ||+|++|
T Consensus 677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA---d~tirlf 732 (733)
T KOG0650|consen 677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA---DGTIRLF 732 (733)
T ss_pred EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC---CceEEee
Confidence 65321 11223456788888774 456789999999999998 9999998
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6.6e-17 Score=164.56 Aligned_cols=388 Identities=10% Similarity=0.114 Sum_probs=255.7
Q ss_pred ceEEEEeCCceEEEecCCCCCCCcccccCCC-cccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCC--CeeE
Q 005315 173 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSY-WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVKL 248 (702)
Q Consensus 173 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~~ 248 (702)
.+++++..++.+-+||....--....+.++. ..+-+++|++.| .|.+.+.+| |.-||+. +.+++...... .|.+
T Consensus 38 ~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~-~lk~~~~~d~~gg~IWs 115 (691)
T KOG2048|consen 38 NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLH-TLKQKYNIDSNGGAIWS 115 (691)
T ss_pred CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecc-cCceeEEecCCCcceeE
Confidence 3578888888888999854444455666654 678999999555 566666666 8899999 88888877544 3999
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEe--eccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEE
Q 005315 249 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR--DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 326 (702)
Q Consensus 249 i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~ 326 (702)
++.+|.++.++.|+.+ |.+..+++..++... .|......+. +++|+| ++..|+.
T Consensus 116 iai~p~~~~l~Igcdd----------Gvl~~~s~~p~~I~~~r~l~rq~sRvL-------------slsw~~-~~~~i~~ 171 (691)
T KOG2048|consen 116 IAINPENTILAIGCDD----------GVLYDFSIGPDKITYKRSLMRQKSRVL-------------SLSWNP-TGTKIAG 171 (691)
T ss_pred EEeCCccceEEeecCC----------ceEEEEecCCceEEEEeecccccceEE-------------EEEecC-CccEEEe
Confidence 9999999999999999 988888877666533 3433333332 799999 9999999
Q ss_pred ec-CCeEEEEecCCcccccceeeccCC--------eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee
Q 005315 327 LG-KNMISVYETESFTLIDKKSLKVEN--------VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 397 (702)
Q Consensus 327 ~~-d~~i~v~d~~~~~~~~~~~~~~~~--------v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 397 (702)
|+ ||.|++||+.++..+........+ |.++.+-.++ .|++ +|..+.|..|+......+.....
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~s-------gDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIAS-------GDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEE-------ecCCceEEEEcccCcchhhhhhh
Confidence 98 999999999988765422221211 5666666554 4444 78888888999888888888888
Q ss_pred cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCc-ceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC
Q 005315 398 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI-PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 476 (702)
Q Consensus 398 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 476 (702)
+.....+++-++++.++.+++-+.. +-.|....... -+.......|...|.+++..++ .+++++.|..
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~---------ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~ 312 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPK---------IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT 312 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCc---------eEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeE
Confidence 8888889999999888888777654 22222222111 1111223356666777666554 3333332320
Q ss_pred ---------------------------------------CCeEEEEEeecccC--cCceEE---EEEcCCCceeEEEEcc
Q 005315 477 ---------------------------------------RPDISFYSMRTAQH--AGRVSK---LTTLKGKQANALFWSP 512 (702)
Q Consensus 477 ---------------------------------------~~~v~i~d~~~~~~--~~~~~~---~~~~~~~~v~~~~~sp 512 (702)
...+.+|.+-+... ...... +..-....+.+.+.||
T Consensus 313 l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP 392 (691)
T KOG2048|consen 313 LAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP 392 (691)
T ss_pred EEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC
Confidence 01233333322100 001111 1111223578899999
Q ss_pred CCCEEEEEeccCCCceEEEEECCCcceee--e-----cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecccee-
Q 005315 513 SGRFIVLAGLKGFNGQLEFYNVDELETMA--T-----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL- 584 (702)
Q Consensus 513 dg~~l~~~~~~~~dg~v~i~d~~~~~~~~--~-----~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l- 584 (702)
+|++|+.++. ..+++|.+.....+. . ...-..+.+.|+-|+..++.++.. ...+.+++..+...
T Consensus 393 dg~~Ia~st~----~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~----~~~le~~el~~ps~k 464 (691)
T KOG2048|consen 393 DGNLIAISTV----SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN----IFSLEEFELETPSFK 464 (691)
T ss_pred CCCEEEEeec----cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecc----cceeEEEEecCcchh
Confidence 9999999884 678888877311211 1 112356778999999988888742 66777777654322
Q ss_pred --ee----eccccEeeEEEeeCCCCCCChhhHHHH
Q 005315 585 --YR----TLKDHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 585 --~~----~~~~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
.. .....|..+.-+|+|++|+..+..+.|
T Consensus 465 el~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I 499 (691)
T KOG2048|consen 465 ELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI 499 (691)
T ss_pred hhhccccccCCCcceeEEEcCCCCEEEEEeccceE
Confidence 11 123678999999999999987766544
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1e-17 Score=153.68 Aligned_cols=297 Identities=16% Similarity=0.174 Sum_probs=206.9
Q ss_pred cCCCcccceEEECC-CCcEEEEEeCCc-eEEeecCcCc---------c--eeeeecCC-----CeeEEEecCCC-CEEEE
Q 005315 200 KRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTF---------N--RLMRYAHP-----QVKLIDFSPGE-KYLVT 260 (702)
Q Consensus 200 ~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~---------~--~~~~~~~~-----~v~~i~fSpdg-~~l~t 260 (702)
..|.+.|+.++..| .|+|+++|+.|| |.|||++... + ++..-+|+ .|.++.|-|-. -.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999987 599999999999 7799987221 0 11122333 38899999844 46667
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC---cEEEEec-CCeEEEEe
Q 005315 261 YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD---KYFAKLG-KNMISVYE 336 (702)
Q Consensus 261 ~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg---~~la~~~-d~~i~v~d 336 (702)
++.| .+++|||+.|-+....|+...... .-+||| -. -++|++. +-.|++.|
T Consensus 120 sSFD----------htlKVWDtnTlQ~a~~F~me~~VY--------------shamSp-~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 120 SSFD----------HTLKVWDTNTLQEAVDFKMEGKVY--------------SHAMSP-MAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred cccc----------ceEEEeecccceeeEEeecCceee--------------hhhcCh-hhhcceEEEEecCCCcEEEEe
Confidence 7788 999999999998888887665443 345565 32 3677777 88999999
Q ss_pred cCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEE
Q 005315 337 TESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 416 (702)
Q Consensus 337 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 416 (702)
+.+|..-+..+.|..+|..+.|||...++.+. ++.|+.+++|.+.-.++- + .
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLat----gsaDg~irlWDiRrasgc----------------------f-~- 226 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLAT----GSADGAIRLWDIRRASGC----------------------F-R- 226 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEe----cCCCceEEEEEeecccce----------------------e-E-
Confidence 99999999999999999999999998776543 778888887765432211 1 1
Q ss_pred EEcccccccccccccEEEEEEec-CCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCc-e
Q 005315 417 KVDRYTKTKKSTYTGFELFRIKE-RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR-V 494 (702)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~-~ 494 (702)
..+... +..|+. ..-++|.+.|..++|+.+|.++++++.|. .+++|+...+....+ .
T Consensus 227 -----------------~lD~hn~k~~p~~-~~n~ah~gkvngla~tSd~~~l~~~gtd~---r~r~wn~~~G~ntl~~~ 285 (397)
T KOG4283|consen 227 -----------------VLDQHNTKRPPIL-KTNTAHYGKVNGLAWTSDARYLASCGTDD---RIRVWNMESGRNTLREF 285 (397)
T ss_pred -----------------EeecccCccCccc-cccccccceeeeeeecccchhhhhccCcc---ceEEeecccCccccccc
Confidence 111111 011111 12347899999999999999999999988 899999987654311 0
Q ss_pred -EEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee--ecccCceeeeEECCCCCEEEEEEeeccccc
Q 005315 495 -SKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEME 571 (702)
Q Consensus 495 -~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d 571 (702)
.....-..+....+. +.+...++..-. ++.+.++++-.+..+. ..|...+.+..+.|+=+.+.++.. |
T Consensus 286 g~~~~n~~~~~~~~~~-~~~s~vfv~~p~---~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~-----d 356 (397)
T KOG4283|consen 286 GPIIHNQTTSFAVHIQ-SMDSDVFVLFPN---DGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM-----N 356 (397)
T ss_pred ccccccccccceEEEe-ecccceEEEEec---CCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc-----C
Confidence 011111111112233 333333333333 6888999888777665 366788889999999888888888 8
Q ss_pred ccEEEEEe
Q 005315 572 NGFNIWSF 579 (702)
Q Consensus 572 ~~v~iw~~ 579 (702)
+.+..|..
T Consensus 357 ~ni~~w~p 364 (397)
T KOG4283|consen 357 GNIYMWSP 364 (397)
T ss_pred Cccccccc
Confidence 99988875
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.3e-17 Score=162.64 Aligned_cols=286 Identities=13% Similarity=0.172 Sum_probs=193.5
Q ss_pred eEEEecCCCCCCCcccccCC-Ccc-cceEEECCCCcEEEEEeCCc--eEEeecCcCcceee-eecCCC-eeEEEecCCCC
Q 005315 183 TEVLWNDARHLKPEPVYKRS-YWT-ESFVQWSPLGTYLATVHRQG--AAVWGGANTFNRLM-RYAHPQ-VKLIDFSPGEK 256 (702)
Q Consensus 183 ~~~~w~~~~~~~~~~~~~~~-~~~-v~~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~-~~~~~~-v~~i~fSpdg~ 256 (702)
..++|+. .++.....|.+. ... -.+-+. .+.|++++.... +.+|.+. ...... .+-.|+ |.+++-+|+|.
T Consensus 19 ~~~~~dl-~TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~-k~~~~~q~~v~Pg~v~al~s~n~G~ 94 (476)
T KOG0646|consen 19 NCIVWDL-RTGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQLKRPLLHVWEIL-KKDQVVQYIVLPGPVHALASSNLGY 94 (476)
T ss_pred ceeEEec-CCCceeEEecCcccccchhhhhh--chhheeeecccCccccccccC-chhhhhhhcccccceeeeecCCCce
Confidence 3568887 455555555443 111 111112 236777766544 7799987 444333 444555 99999999999
Q ss_pred EEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEE
Q 005315 257 YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVY 335 (702)
Q Consensus 257 ~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~ 335 (702)
||+.|.-. +.|++|.+.+|.++..+..|...++ |++|+. ||.+|++++ ||.|.+|
T Consensus 95 ~l~ag~i~----------g~lYlWelssG~LL~v~~aHYQ~IT-------------cL~fs~-dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 95 FLLAGTIS----------GNLYLWELSSGILLNVLSAHYQSIT-------------CLKFSD-DGSHIITGSKDGAVLVW 150 (476)
T ss_pred EEEeeccc----------CcEEEEEeccccHHHHHHhhcccee-------------EEEEeC-CCcEEEecCCCccEEEE
Confidence 99998777 8899999999999999999988876 999999 999999999 9999999
Q ss_pred ecCCc---------ccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeE
Q 005315 336 ETESF---------TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMY 406 (702)
Q Consensus 336 d~~~~---------~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (702)
.+-+. ..+.....|.-.|+++...+.
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~G--------------------------------------------- 185 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSG--------------------------------------------- 185 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCC---------------------------------------------
Confidence 86521 011111122223444333322
Q ss_pred EccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEee
Q 005315 407 WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 486 (702)
Q Consensus 407 ~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 486 (702)
+...+|++.+.|.+ +++|++.... -...+.+ ...+.+++.+|-.+.+++|+.+| .|.+.++.
T Consensus 186 --g~~~rl~TaS~D~t---------~k~wdlS~g~-LLlti~f---p~si~av~lDpae~~~yiGt~~G---~I~~~~~~ 247 (476)
T KOG0646|consen 186 --GTNARLYTASEDRT---------IKLWDLSLGV-LLLTITF---PSSIKAVALDPAERVVYIGTEEG---KIFQNLLF 247 (476)
T ss_pred --CccceEEEecCCce---------EEEEEeccce-eeEEEec---CCcceeEEEcccccEEEecCCcc---eEEeeehh
Confidence 12234555555554 5556555431 2223344 77899999999999999999999 77777764
Q ss_pred cccCc----------CceEEEEEcCCC----ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc--cCceee
Q 005315 487 TAQHA----------GRVSKLTTLKGK----QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE--HFMATD 550 (702)
Q Consensus 487 ~~~~~----------~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~--~~~i~~ 550 (702)
...+. .....+..+.+| .|++++.|-||..|++|+. ||.|+|||+.+.+++.+.. .++|+.
T Consensus 248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~---dg~VcvWdi~S~Q~iRtl~~~kgpVtn 324 (476)
T KOG0646|consen 248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE---DGKVCVWDIYSKQCIRTLQTSKGPVTN 324 (476)
T ss_pred cCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC---CCCEEEEecchHHHHHHHhhhccccce
Confidence 32211 111223333332 7999999999999999998 9999999999988887744 588999
Q ss_pred eEECCCCCEEEE
Q 005315 551 VEWDPTGRYVAT 562 (702)
Q Consensus 551 ~~~spdg~~l~t 562 (702)
+.+.|=-+-+..
T Consensus 325 L~i~~~~~~~~l 336 (476)
T KOG0646|consen 325 LQINPLERGIIL 336 (476)
T ss_pred eEeeccccceec
Confidence 999765444333
No 131
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=5.5e-18 Score=162.38 Aligned_cols=330 Identities=16% Similarity=0.263 Sum_probs=196.2
Q ss_pred cccccCCCCCceEEEEeCCceEEEecCCCC--CC------CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecC-
Q 005315 163 QKWLTDEKARDQFVIRSGTDTEVLWNDARH--LK------PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA- 232 (702)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~~------~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~- 232 (702)
.+..+.......++..++|..+++|..... .+ ....+.+|...|++|.|+|+|..||+|+.+| +.+|-..
T Consensus 17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~ 96 (434)
T KOG1009|consen 17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD 96 (434)
T ss_pred EEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC
Confidence 344444444445677778888889986311 11 1234689999999999999999999999999 7799543
Q ss_pred -------c-------Ccce--eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCc
Q 005315 233 -------N-------TFNR--LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD 296 (702)
Q Consensus 233 -------~-------~~~~--~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~ 296 (702)
+ .+.. +.+.+...|..++|+|++.++++++.+ ..+++||+..|..+..+..|..
T Consensus 97 ~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d----------ns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 97 VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD----------NSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred cCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc----------ceEEEEEeccceeEeecccccc
Confidence 1 1111 222344569999999999999999999 8999999999999999999877
Q ss_pred ccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCC
Q 005315 297 EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG 375 (702)
Q Consensus 297 ~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~ 375 (702)
.+. .++|.| -++|+++.+ |...+++.+...+.+... .. ...++- .+.
T Consensus 167 yvq-------------gvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~----------~~---~~m~~~-----~~~ 214 (434)
T KOG1009|consen 167 YVQ-------------GVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRH----------GL---DIMPAK-----AFN 214 (434)
T ss_pred ccc-------------eeecch-hhhhhhhhccCcccceeeeeeeeeeeee----------ee---eEeeec-----ccC
Confidence 652 578999 999999998 776666665533322111 10 000110 112
Q ss_pred CCCcEEE-EEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC
Q 005315 376 NQPARVS-LVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND 454 (702)
Q Consensus 376 ~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~ 454 (702)
.+.++.. ++.-.+.+.+ + .++.|+|+|..|++.................+|.-.....|. ..+++-..
T Consensus 215 ~~e~~s~rLfhDeTlksF-----F----rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~--~~lp~~~k 283 (434)
T KOG1009|consen 215 EREGKSTRLFHDETLKSF-----F----RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA--ARLPSPKK 283 (434)
T ss_pred CCCcceeeeeecCchhhh-----h----hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce--eecCCCCc
Confidence 2222221 2222221111 1 124688999988875443221111000011122111111111 11111111
Q ss_pred ceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEEC
Q 005315 455 KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 534 (702)
Q Consensus 455 ~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~ 534 (702)
++..+.++| ..|.++.-. .. .. +.--|-+-.+++++ ...|+|||.
T Consensus 284 ~~lavr~~p-----------------Vy~elrp~~---------~~---~~--~~~lpyrlvfaiAt----~~svyvydt 328 (434)
T KOG1009|consen 284 PALAVRFSP-----------------VYYELRPLS---------SE---KF--LFVLPYRLVFAIAT----KNSVYVYDT 328 (434)
T ss_pred ceEEEEeee-----------------eEEEecccc---------cc---cc--ccccccceEEEEee----cceEEEecc
Confidence 122222211 223332111 00 00 11223444556666 578999999
Q ss_pred CCcceee---ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceee
Q 005315 535 DELETMA---TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY 585 (702)
Q Consensus 535 ~~~~~~~---~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~ 585 (702)
++...+. ..|...+++++|++||.+|+.+|. ||-..+-.+.+..+.
T Consensus 329 q~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~-----DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 329 QTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSST-----DGFCSLVTFEPWELG 377 (434)
T ss_pred ccccceEEEeeeeeeeecceeecCCCcEEEEecc-----CCceEEEEEcchhcc
Confidence 9766554 478899999999999999999999 898888888766554
No 132
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=8e-18 Score=156.05 Aligned_cols=231 Identities=19% Similarity=0.316 Sum_probs=174.4
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc--
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-- 322 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~-- 322 (702)
.+++++. +|.|+|+|+.| -+|+|||+.+...+..+..|.+.++ ++.|.+ +-.
T Consensus 45 sitavAV--s~~~~aSGssD----------etI~IYDm~k~~qlg~ll~Hagsit-------------aL~F~~-~~S~s 98 (362)
T KOG0294|consen 45 SITALAV--SGPYVASGSSD----------ETIHIYDMRKRKQLGILLSHAGSIT-------------ALKFYP-PLSKS 98 (362)
T ss_pred ceeEEEe--cceeEeccCCC----------CcEEEEeccchhhhcceeccccceE-------------EEEecC-Ccchh
Confidence 4999998 58999999999 8999999999999999988887765 789988 654
Q ss_pred EEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccc
Q 005315 323 YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 401 (702)
Q Consensus 323 ~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 401 (702)
.|.+++ ||.|.+|+.....++.....|...|+.++.+|.|++-.+ .++|+..+.|.+ -.++
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALs-----Vg~D~~lr~WNL--V~Gr----------- 160 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALS-----VGGDQVLRTWNL--VRGR----------- 160 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEE-----EcCCceeeeehh--hcCc-----------
Confidence 666676 999999999999988888888889999999999998777 567777665432 1111
Q ss_pred cceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEE
Q 005315 402 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 481 (702)
Q Consensus 402 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 481 (702)
.- ....+ ....+.+.|+|.|.+|+++..++ |-
T Consensus 161 -----------~a------------------------------~v~~L---~~~at~v~w~~~Gd~F~v~~~~~----i~ 192 (362)
T KOG0294|consen 161 -----------VA------------------------------FVLNL---KNKATLVSWSPQGDHFVVSGRNK----ID 192 (362)
T ss_pred -----------cc------------------------------eeecc---CCcceeeEEcCCCCEEEEEeccE----EE
Confidence 00 00112 23334589999999999988764 88
Q ss_pred EEEeecccCcCceEEEEEcCC-CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee--ecccCceeeeE--ECCC
Q 005315 482 FYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--TAEHFMATDVE--WDPT 556 (702)
Q Consensus 482 i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~--~~~~~~i~~~~--~spd 556 (702)
||.+.+.. .+..+.. ..+.++.|- ++..|++|+. ++.|.+||.++...+. .+|...|-++. -.|+
T Consensus 193 i~q~d~A~------v~~~i~~~~r~l~~~~l-~~~~L~vG~d---~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~ 262 (362)
T KOG0294|consen 193 IYQLDNAS------VFREIENPKRILCATFL-DGSELLVGGD---NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPE 262 (362)
T ss_pred EEecccHh------Hhhhhhccccceeeeec-CCceEEEecC---CceEEEeccCCCccceeeecchhheeeeEEEecCC
Confidence 99886543 2233322 234444443 5668888887 8999999999765554 46778888776 3678
Q ss_pred CCEEEEEEeecccccccEEEEEeccc
Q 005315 557 GRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 557 g~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
+.||+|+++ ||.|+||++...
T Consensus 263 ~~~lvTaSS-----DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 263 HEYLVTASS-----DGFIKVWDIDME 283 (362)
T ss_pred ceEEEEecc-----CceEEEEEcccc
Confidence 899999999 999999998744
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.7e-18 Score=153.55 Aligned_cols=247 Identities=14% Similarity=0.270 Sum_probs=184.0
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC---cEEeeccCCCcccccCCCCCCCCcccceEEEc-CC
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG-GG 319 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s-~~ 319 (702)
.-|..+...--|+.|||++.| ++|+|+.++.+ +++.++.+|.+++ | .+.|. |.
T Consensus 12 D~IHda~lDyygkrlATcsSD----------~tVkIf~v~~n~~s~ll~~L~Gh~GPV------------w-qv~wahPk 68 (299)
T KOG1332|consen 12 DMIHDAQLDYYGKRLATCSSD----------GTVKIFEVRNNGQSKLLAELTGHSGPV------------W-KVAWAHPK 68 (299)
T ss_pred hhhhHhhhhhhcceeeeecCC----------ccEEEEEEcCCCCceeeeEecCCCCCe------------e-EEeecccc
Confidence 347777777789999999999 99999999754 4688999999988 6 46775 32
Q ss_pred CCcEEEEec-CCeEEEEecCCccc--ccceeeccCCeeEEEeCCC--CCeEEEEeecCCCCCCCcEEEEEecCCc-ceee
Q 005315 320 KDKYFAKLG-KNMISVYETESFTL--IDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSK-EELR 393 (702)
Q Consensus 320 dg~~la~~~-d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~-~~~~ 393 (702)
-|.+||+++ ||.|.||.-.+++. ......|...|++++|.|. |-.|++ ++.|+.+.|..++.... ..-+
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-----asSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-----ASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEE-----eeCCCcEEEEEEcCCCCccchh
Confidence 588999999 99999999887743 2334567788999999998 556676 77899988888876622 1122
Q ss_pred eeeecccccceeEEccC---C-----------CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEE
Q 005315 394 QKNLFSVSDCKMYWQSS---G-----------DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF 459 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~---g-----------~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~ 459 (702)
....+......+.|.|- | +.|+++..|+. +.+|......-.. ...|.+|.+.|+.+
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~---------VkiW~~~~~~w~~-e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL---------VKIWKFDSDSWKL-ERTLEGHKDWVRDV 213 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccCCccc---------eeeeecCCcchhh-hhhhhhcchhhhhh
Confidence 22334455556678876 4 45777777666 7888887642221 22377999999999
Q ss_pred EEeeCC----cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 460 AWEPKG----HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 460 ~~sp~g----~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
+|.|.- .+||+++.|+ +|.||..+......+.+++..+ ...+..++||+.|..|++++. |+.|.+|.-+
T Consensus 214 AwaP~~gl~~s~iAS~SqDg---~viIwt~~~e~e~wk~tll~~f-~~~~w~vSWS~sGn~LaVs~G---dNkvtlwke~ 286 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDG---TVIIWTKDEEYEPWKKTLLEEF-PDVVWRVSWSLSGNILAVSGG---DNKVTLWKEN 286 (299)
T ss_pred hhccccCCCceeeEEecCCC---cEEEEEecCccCcccccccccC-CcceEEEEEeccccEEEEecC---CcEEEEEEeC
Confidence 999954 5799999999 9999998633233333455554 346899999999999999987 8999999755
No 134
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=1.4e-17 Score=162.12 Aligned_cols=275 Identities=13% Similarity=0.182 Sum_probs=201.1
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeec-cC------CCcccccCCCCCCCCcccceE
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF-KG------SADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~-~~------~~~~~~~~~~~~~~~~~w~~~ 314 (702)
|+..|.+++++|+++++++++.+ ++|.=|++.+|+..+.+ .. |..+..... ........ ++
T Consensus 141 H~~s~~~vals~d~~~~fsask~----------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil-~~ 208 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKD----------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEIL-TL 208 (479)
T ss_pred ccCcceEEEeeccccceeecCCC----------cceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeE-EE
Confidence 45569999999999999999999 99999999999865222 11 111110000 01111111 78
Q ss_pred EEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 315 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 315 ~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
+.|+ ||+|||+++ |..|.||+..+++.+.....|-..|.+++|-.....|.+ ++.|..+++|..+-
T Consensus 209 avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys-----~s~Drsvkvw~~~~------- 275 (479)
T KOG0299|consen 209 AVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYS-----ASADRSVKVWSIDQ------- 275 (479)
T ss_pred EEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceee-----eecCCceEEEehhH-------
Confidence 9999 999999999 999999999999888777788888999888776666666 66777766654432
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 473 (702)
... .-++.+|.+.|.++....-++.+.+++.
T Consensus 276 ----------------------------------------------~s~---vetlyGHqd~v~~IdaL~reR~vtVGgr 306 (479)
T KOG0299|consen 276 ----------------------------------------------LSY---VETLYGHQDGVLGIDALSRERCVTVGGR 306 (479)
T ss_pred ----------------------------------------------hHH---HHHHhCCccceeeechhcccceEEeccc
Confidence 100 0124488888888887777777777777
Q ss_pred CCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee---ccc-----
Q 005315 474 DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEH----- 545 (702)
Q Consensus 474 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~---~~~----- 545 (702)
|. ++++|.+.... ..+..-....+-+++|-.+. .+++|+. +|.|.+|++...+.+.+ .|+
T Consensus 307 Dr---T~rlwKi~ees-----qlifrg~~~sidcv~~In~~-HfvsGSd---nG~IaLWs~~KKkplf~~~~AHgv~~~~ 374 (479)
T KOG0299|consen 307 DR---TVRLWKIPEES-----QLIFRGGEGSIDCVAFINDE-HFVSGSD---NGSIALWSLLKKKPLFTSRLAHGVIPEL 374 (479)
T ss_pred cc---eeEEEeccccc-----eeeeeCCCCCeeeEEEeccc-ceeeccC---CceEEEeeecccCceeEeeccccccCCc
Confidence 88 99999994322 25555445578888887665 5677877 99999999987776654 121
Q ss_pred ------CceeeeEECCCCCEEEEEEeecccccccEEEEEeccc-----eeeeec-cccEeeEEEeeCCCCCCCh
Q 005315 546 ------FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-----LLYRTL-KDHFFQFLWRPRPPSFLTP 607 (702)
Q Consensus 546 ------~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-----~l~~~~-~~~i~~~~w~p~~~~l~s~ 607 (702)
..|++++..|....+|+++. +|.|++|.+... +++... .+-|..++|+++|+.|+.+
T Consensus 375 ~~~~~~~Witsla~i~~sdL~asGS~-----~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 375 DPVNGNFWITSLAVIPGSDLLASGSW-----SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccccceeeeEecccCceEEecCC-----CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 26889999999999999999 899999998743 333333 3789999999999977654
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.2e-18 Score=176.32 Aligned_cols=270 Identities=11% Similarity=0.176 Sum_probs=191.5
Q ss_pred ccceEEECCCCcEEEEEeCCceEEeecCcCc---ceeeeecC-C----CeeEEEecC-CCCEEEEEcCCCCCCCcCCCcc
Q 005315 205 TESFVQWSPLGTYLATVHRQGAAVWGGANTF---NRLMRYAH-P----QVKLIDFSP-GEKYLVTYSSHEPSNPRDANRV 275 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~---~~~~~~~~-~----~v~~i~fSp-dg~~l~t~s~d~~~~~~~~~~~ 275 (702)
..+.|+..++-..|+.++..-+.|+.+.... ....++.. + .+..+.|+. +.++|||++.. |
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n----------G 110 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN----------G 110 (839)
T ss_pred ccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC----------C
Confidence 3456677788889999988877777665211 12222221 1 256778874 46899999999 9
Q ss_pred EEEEEEccC---CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccC
Q 005315 276 VINIFDVRT---GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE 351 (702)
Q Consensus 276 ~i~vwd~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~ 351 (702)
.|.+||+.. .+.+..|..|...+. ++.|++....+|++++ ||+|++||+...+-........+
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~-------------~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSAN-------------KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE 177 (839)
T ss_pred cEEEEecCccccchhhhHhhhhcccee-------------eeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence 999999966 566778888887764 7888872345777888 99999999997766555555667
Q ss_pred CeeEEEeCCCC-CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 352 NVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 352 ~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
.|+++.|+|.. ..++. +.+.+.
T Consensus 178 SiRDV~fsp~~~~~F~s-------------------------------------------------~~dsG~-------- 200 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFAS-------------------------------------------------IHDSGY-------- 200 (839)
T ss_pred hhhceeeccCCCceEEE-------------------------------------------------ecCCce--------
Confidence 78999998863 33333 111111
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEE
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALF 509 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~ 509 (702)
+++|+++...... ..+.+|.++|.++.|+|++.+||+|+.|+ .|+||++.+... ..+.++. ..++..+.
T Consensus 201 -lqlWDlRqp~r~~--~k~~AH~GpV~c~nwhPnr~~lATGGRDK---~vkiWd~t~~~~----~~~~tInTiapv~rVk 270 (839)
T KOG0269|consen 201 -LQLWDLRQPDRCE--KKLTAHNGPVLCLNWHPNREWLATGGRDK---MVKIWDMTDSRA----KPKHTINTIAPVGRVK 270 (839)
T ss_pred -EEEeeccCchhHH--HHhhcccCceEEEeecCCCceeeecCCCc---cEEEEeccCCCc----cceeEEeecceeeeee
Confidence 5666666544332 45679999999999999999999999999 999999965432 2555555 44899999
Q ss_pred EccCCCE-EEEEeccCCCceEEEEECCCcce---eeecccCceeeeEECCC-CCEEEEEEe
Q 005315 510 WSPSGRF-IVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDPT-GRYVATAVT 565 (702)
Q Consensus 510 ~spdg~~-l~~~~~~~~dg~v~i~d~~~~~~---~~~~~~~~i~~~~~spd-g~~l~t~s~ 565 (702)
|-|.-++ |++++... |-.|+|||+...-+ ....|...++.++|... -..+.+++.
T Consensus 271 WRP~~~~hLAtcsmv~-dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 271 WRPARSYHLATCSMVV-DTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred eccCccchhhhhhccc-cceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence 9998765 56665555 88999999984322 23356678889999763 335666666
No 136
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=6.4e-18 Score=170.67 Aligned_cols=273 Identities=18% Similarity=0.285 Sum_probs=197.5
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 324 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~l 324 (702)
.|..++|-|||..|+.+..+ .+.|||+..|..+.++++|++.+. +++||. ||+.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-----------rlliyD~ndG~llqtLKgHKDtVy-------------cVAys~-dGkrF 68 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-----------RLLVYDTSDGTLLQPLKGHKDTVY-------------CVAYAK-DGKRF 68 (1081)
T ss_pred chheeEECCCCceEEEecCC-----------EEEEEeCCCcccccccccccceEE-------------EEEEcc-CCcee
Confidence 58999999999999888777 689999999999999999999874 899999 99999
Q ss_pred EEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccc
Q 005315 325 AKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 403 (702)
Q Consensus 325 a~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 403 (702)
|+++ |..|.+|...--..+ +-.|...|.++.|+|-.+.|++ ++-+. .-+|....+.....+ .....+
T Consensus 69 ASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~Las-----CsLsd---FglWS~~qK~V~K~k--ss~R~~ 136 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLAS-----CSLSD---FGLWSPEQKSVSKHK--SSSRII 136 (1081)
T ss_pred ccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhh-----cchhh---ccccChhhhhHHhhh--hheeEE
Confidence 9999 999999986533332 1246677999999999999987 33221 223433333222222 233445
Q ss_pred eeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe-cCCCCceeEEEEeeCC-----cEEEEEEcCCCC
Q 005315 404 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWEPKG-----HRFAVIHGDSPR 477 (702)
Q Consensus 404 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~sp~g-----~~l~~~~~d~~~ 477 (702)
..+|+.||++++.+..+++. .+-. ..+.+.-.+.- .+.+.+|.+++|+|.. ..+++.....
T Consensus 137 ~CsWtnDGqylalG~~nGTI---------siRN--k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q-- 203 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTI---------SIRN--KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ-- 203 (1081)
T ss_pred EeeecCCCcEEEEeccCceE---------Eeec--CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc--
Confidence 66899999999999998873 2221 11111111222 2357899999999964 3566666666
Q ss_pred CeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-c-ccCceeeeEECC
Q 005315 478 PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-A-EHFMATDVEWDP 555 (702)
Q Consensus 478 ~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~-~~~~i~~~~~sp 555 (702)
++.+|.+..... ..-+.+ +-...++.+-|+|.|+++|+. ++.+.+|..+. -.+.+ + ....|+.++..|
T Consensus 204 -TLSFy~LsG~~I----gk~r~L-~FdP~CisYf~NGEy~LiGGs---dk~L~~fTR~G-vrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 204 -TLSFYQLSGKQI----GKDRAL-NFDPCCISYFTNGEYILLGGS---DKQLSLFTRDG-VRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred -eeEEEEecceee----cccccC-CCCchhheeccCCcEEEEccC---CCceEEEeecC-eEEeeccccceeEEEEEEcc
Confidence 888888853211 011112 223468899999999999998 99999998774 33433 2 347899999999
Q ss_pred CCCEEEEEEeecccccccEEEEEeccc
Q 005315 556 TGRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 556 dg~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
+|++++.|.. ||++.-|++...
T Consensus 274 NsQ~v~~GCq-----DGTiACyNl~fS 295 (1081)
T KOG1538|consen 274 NSQYVVVGCQ-----DGTIACYNLIFS 295 (1081)
T ss_pred CCceEEEEEc-----cCeeehhhhHHh
Confidence 9999999999 999999987543
No 137
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.5e-17 Score=153.81 Aligned_cols=266 Identities=15% Similarity=0.259 Sum_probs=194.8
Q ss_pred CCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEee------cCc-------C--
Q 005315 171 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWG------GAN-------T-- 234 (702)
Q Consensus 171 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~------~~~-------~-- 234 (702)
++..+...+.+.+..+|.. ..+.+...|++|.++|+|+.|+|.|.++++++.|+ ..||. ++. +
T Consensus 159 tqpi~gtASADhTA~iWs~-Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE 237 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSL-ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE 237 (481)
T ss_pred CCcceeecccccceeEEee-ccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence 4444444556889999999 78999999999999999999999999999999999 45885 110 0
Q ss_pred ------------------------cceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEE
Q 005315 235 ------------------------FNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 288 (702)
Q Consensus 235 ------------------------~~~~~~~-~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~ 288 (702)
..++.++ .|.. |.+..|-..|+.+++++.| .+..+||+.+|..+
T Consensus 238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD----------RTAnlwDVEtge~v 307 (481)
T KOG0300|consen 238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD----------RTANLWDVETGEVV 307 (481)
T ss_pred hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc----------ccceeeeeccCcee
Confidence 0022233 2444 7888999999999999999 89999999999999
Q ss_pred eeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCc-ccccceeeccCCeeEEEeCCCCCeEE
Q 005315 289 RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF-TLIDKKSLKVENVMDFSWSPTDPIIS 366 (702)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~sp~~~~la 366 (702)
..+.+|....+ .++-.| ..+++++.+ |.+.++||.... ..+..+..|...|++..|.-+.+.+.
T Consensus 308 ~~LtGHd~ELt-------------HcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVS 373 (481)
T KOG0300|consen 308 NILTGHDSELT-------------HCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVS 373 (481)
T ss_pred ccccCcchhcc-------------ccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceee
Confidence 99999987753 456677 888888888 999999998722 23334556777788888876655443
Q ss_pred EEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005315 367 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 446 (702)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 446 (702)
++.|.+++ +|+++....|+..
T Consensus 374 ------gSDDrTvK-----------------------------------------------------vWdLrNMRsplAT 394 (481)
T KOG0300|consen 374 ------GSDDRTVK-----------------------------------------------------VWDLRNMRSPLAT 394 (481)
T ss_pred ------cCCCceEE-----------------------------------------------------EeeeccccCccee
Confidence 55555544 4444444445555
Q ss_pred EEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-----CC--ceeEEEEccCC--CEE
Q 005315 447 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-----GK--QANALFWSPSG--RFI 517 (702)
Q Consensus 447 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~--~v~~~~~spdg--~~l 517 (702)
+.. ..+++.++.+..+..||.-..+. .|++||+... .+..++ +| .+.+++|+-+- .-|
T Consensus 395 IRt---dS~~NRvavs~g~~iIAiPhDNR---qvRlfDlnG~-------RlaRlPrtsRqgHrRMV~c~AW~eehp~cnL 461 (481)
T KOG0300|consen 395 IRT---DSPANRVAVSKGHPIIAIPHDNR---QVRLFDLNGN-------RLARLPRTSRQGHRRMVTCCAWLEEHPACNL 461 (481)
T ss_pred eec---CCccceeEeecCCceEEeccCCc---eEEEEecCCC-------ccccCCcccccccceeeeeeeccccCccccc
Confidence 555 77888888887777777766666 9999999532 222332 33 58899997653 356
Q ss_pred EEEeccCCCceEEEEECCC
Q 005315 518 VLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 518 ~~~~~~~~dg~v~i~d~~~ 536 (702)
++++. |..+.=|.+..
T Consensus 462 ftcGF---DR~v~gW~in~ 477 (481)
T KOG0300|consen 462 FTCGF---DRMVAGWKINT 477 (481)
T ss_pred ccccc---cceeeeeEecc
Confidence 77777 89998898763
No 138
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=7.5e-17 Score=148.82 Aligned_cols=276 Identities=16% Similarity=0.138 Sum_probs=189.1
Q ss_pred ccccccccCCCCCceEEEEeCCceEEEecCCCCCCCc-ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcce
Q 005315 160 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPE-PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR 237 (702)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~ 237 (702)
+.+.+..+.|.....++.++=++++.+|.....+... .....|..+|.+++||.||+.+++|+.|+ +++||+. +.+.
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~-S~Q~ 106 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA-SGQV 106 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc-CCCe
Confidence 4455666777555566677779999999986544433 34567899999999999999999999999 8899999 7765
Q ss_pred eeeecCC-CeeEEEecCCCC--EEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceE
Q 005315 238 LMRYAHP-QVKLIDFSPGEK--YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 238 ~~~~~~~-~v~~i~fSpdg~--~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 314 (702)
...-.|. .|.++.|-+... .|+|||.| .+|+.||.+...++.++..+....
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD----------KTlKfWD~R~~~pv~t~~LPeRvY---------------- 160 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWD----------KTLKFWDTRSSNPVATLQLPERVY---------------- 160 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccc----------cceeecccCCCCeeeeeeccceee----------------
Confidence 5544455 599999988776 79999999 999999999999998888776543
Q ss_pred EEcCCCCcEEEEec-CCeEEEEecCCcccccceee--ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcce
Q 005315 315 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 391 (702)
Q Consensus 315 ~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 391 (702)
+..- --..++.+. ++.|.+|++..+....+... -.-.+++++..++....+. |+-.+.+.|..++.+..+
T Consensus 161 a~Dv-~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al-----GsiEGrv~iq~id~~~~~- 233 (347)
T KOG0647|consen 161 AADV-LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL-----GSIEGRVAIQYIDDPNPK- 233 (347)
T ss_pred ehhc-cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe-----eeecceEEEEecCCCCcc-
Confidence 1111 122444444 99999999976543322111 1113788888888776677 555555444443332110
Q ss_pred eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEE
Q 005315 392 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 471 (702)
Q Consensus 392 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~ 471 (702)
..+.+...+.. .. ..+.-..|++++|+|.-..|+++
T Consensus 234 --------------------~nFtFkCHR~~----------------~~--------~~~~VYaVNsi~FhP~hgtlvTa 269 (347)
T KOG0647|consen 234 --------------------DNFTFKCHRST----------------NS--------VNDDVYAVNSIAFHPVHGTLVTA 269 (347)
T ss_pred --------------------CceeEEEeccC----------------CC--------CCCceEEecceEeecccceEEEe
Confidence 01111111100 00 00002467889999999999999
Q ss_pred EcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEec
Q 005315 472 HGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 472 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~ 522 (702)
++|| +..+||-.... .+++.+ ..+|++.+|+.+|.+++.+..
T Consensus 270 GsDG---tf~FWDkdar~------kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 270 GSDG---TFSFWDKDART------KLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cCCc---eEEEecchhhh------hhhccCcCCCccceeEecCCCCEEEEEee
Confidence 9999 99999976443 344433 458999999999999988753
No 139
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.4e-17 Score=166.66 Aligned_cols=279 Identities=11% Similarity=0.208 Sum_probs=195.8
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
|...|.+|+..|.|.+|++|+.| |+|+||.+.||.+++++....... +++|+| .+
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdD----------GtvriWEi~TgRcvr~~~~d~~I~--------------~vaw~P-~~ 453 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDD----------GTVRIWEIATGRCVRTVQFDSEIR--------------SVAWNP-LS 453 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCC----------CcEEEEEeecceEEEEEeecceeE--------------EEEecC-CC
Confidence 34459999999999999999999 999999999999999988765433 889999 76
Q ss_pred c--EEEEecCCeEEEEecCCc---------------------------------ccc----cceeeccCCeeEEEeCCCC
Q 005315 322 K--YFAKLGKNMISVYETESF---------------------------------TLI----DKKSLKVENVMDFSWSPTD 362 (702)
Q Consensus 322 ~--~la~~~d~~i~v~d~~~~---------------------------------~~~----~~~~~~~~~v~~~~~sp~~ 362 (702)
. .||.+....+.|-+..-| ..+ .....+...|.++.|+..|
T Consensus 454 ~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 454 DLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred CceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 5 344443333444332111 000 0111234468899999999
Q ss_pred CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCc
Q 005315 363 PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI 442 (702)
Q Consensus 363 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 442 (702)
.+|++..+. ++.-.|.+.++....................|+|...+|++++.+. +++|++.....
T Consensus 534 DYlatV~~~----~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~----------vRiYdL~kqel 599 (733)
T KOG0650|consen 534 DYLATVMPD----SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS----------VRIYDLSKQEL 599 (733)
T ss_pred ceEEEeccC----CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccc----------eEEEehhHHHH
Confidence 999997553 3444566666655443322222334455668999999999988765 58998875322
Q ss_pred ceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEE
Q 005315 443 PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLA 520 (702)
Q Consensus 443 ~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~ 520 (702)
.. .+......|.+|+.+|.|..|++++.++ .+..||+.-... +.+++..| .+.+++|++.-.+++++
T Consensus 600 vK---kL~tg~kwiS~msihp~GDnli~gs~d~---k~~WfDldlssk-----Pyk~lr~H~~avr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 600 VK---KLLTGSKWISSMSIHPNGDNLILGSYDK---KMCWFDLDLSSK-----PYKTLRLHEKAVRSVAFHKRYPLFASG 668 (733)
T ss_pred HH---HHhcCCeeeeeeeecCCCCeEEEecCCC---eeEEEEcccCcc-----hhHHhhhhhhhhhhhhhccccceeeee
Confidence 11 1112256889999999999999999999 899999964332 44454434 68999999999999999
Q ss_pred eccCCCceEEEEECC-------Cccee--e--ecc----cCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 521 GLKGFNGQLEFYNVD-------ELETM--A--TAE----HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 521 ~~~~~dg~v~i~d~~-------~~~~~--~--~~~----~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
+. ||++.+|--. +--++ . .+| ...|.++.|+|.--+|++++. |+++++|.
T Consensus 669 sd---Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA-----d~tirlfT 733 (733)
T KOG0650|consen 669 SD---DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA-----DGTIRLFT 733 (733)
T ss_pred cC---CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC-----CceEEeeC
Confidence 87 8999887432 11111 1 122 245888999999999999999 99999983
No 140
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.1e-16 Score=164.78 Aligned_cols=317 Identities=14% Similarity=0.204 Sum_probs=209.3
Q ss_pred CceEEEecCCCCCCCcccc---cCCCcccceEEECCCCcEEEEEeCCc-eEEeecCc-----CcceeeeecCCCeeEEEe
Q 005315 181 TDTEVLWNDARHLKPEPVY---KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-----TFNRLMRYAHPQVKLIDF 251 (702)
Q Consensus 181 ~~~~~~w~~~~~~~~~~~~---~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-----~~~~~~~~~~~~v~~i~f 251 (702)
+.....|+.+...+..... ..|...++|+++||+|+++|++..+| |.+|.--+ -...+...||..|.+++|
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence 4445567774433211111 35667789999999999999999999 99996442 112344557888999999
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CC
Q 005315 252 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KN 330 (702)
Q Consensus 252 Spdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~ 330 (702)
|++|.||++|+.. +.+.+|.+.|++ ..-++.-...+. .+.||| |+.+.+... |+
T Consensus 260 S~~G~~LlSGG~E----------~VLv~Wq~~T~~-kqfLPRLgs~I~-------------~i~vS~-ds~~~sl~~~DN 314 (792)
T KOG1963|consen 260 SSDGAYLLSGGRE----------GVLVLWQLETGK-KQFLPRLGSPIL-------------HIVVSP-DSDLYSLVLEDN 314 (792)
T ss_pred ecCCceEeecccc----------eEEEEEeecCCC-cccccccCCeeE-------------EEEEcC-CCCeEEEEecCc
Confidence 9999999999999 999999999988 333333333332 689999 998777766 99
Q ss_pred eEEEEecCCcccccceeec-----------cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee----
Q 005315 331 MISVYETESFTLIDKKSLK-----------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK---- 395 (702)
Q Consensus 331 ~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---- 395 (702)
.|.+..+.++......+.- ..=.+.++++|.-+.+++ ...++.|-.|++-+...+...
T Consensus 315 qI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl-------n~~~g~vQ~ydl~td~~i~~~~v~~ 387 (792)
T KOG1963|consen 315 QIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL-------NGHPGHVQFYDLYTDSTIYKLQVCD 387 (792)
T ss_pred eEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee-------cCCCceEEEEeccccceeeeEEEEe
Confidence 9999988766543222110 111567889997777777 555666777776554433211
Q ss_pred -ee------cccccceeEEccCCCEEEEEEccccccccc-ccccEEEEEEecCCcce--eEEEecCCCCceeEEEEee--
Q 005315 396 -NL------FSVSDCKMYWQSSGDYLAVKVDRYTKTKKS-TYTGFELFRIKERDIPI--EVLELDNKNDKIIAFAWEP-- 463 (702)
Q Consensus 396 -~~------~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~--~~~~l~~h~~~v~~~~~sp-- 463 (702)
+. ..+.....+.+..|.++++.-....+..-. .-..+++|......... ...-..+|...+...++.+
T Consensus 388 ~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~ 467 (792)
T KOG1963|consen 388 ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPT 467 (792)
T ss_pred ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCc
Confidence 11 112223334556688888865543211111 12346677665543221 1222236766666655544
Q ss_pred CCcEEEEEEcCCCCCeEEEEEeec------ccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 464 KGHRFAVIHGDSPRPDISFYSMRT------AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 464 ~g~~l~~~~~d~~~~~v~i~d~~~------~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
...++++++.++ .++||-+.. ......|..+..++..++++++||.||..|+++. ++.|.+||..+
T Consensus 468 rs~~~vta~~dg---~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~----~~~Itiwd~~~ 539 (792)
T KOG1963|consen 468 RSVRCVTASVDG---DFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF----DDTITIWDYDT 539 (792)
T ss_pred ccceeEEeccCC---eEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec----CCEEEEecCCC
Confidence 333788888888 899999943 3333457778888777999999999998887775 89999999987
No 141
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.7e-17 Score=148.50 Aligned_cols=249 Identities=16% Similarity=0.158 Sum_probs=181.9
Q ss_pred cccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCc--ceeeee-cCC-CeeEEEecC--CCCEEEEEcCCCCCCCc
Q 005315 198 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF--NRLMRY-AHP-QVKLIDFSP--GEKYLVTYSSHEPSNPR 270 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~--~~~~~~-~~~-~v~~i~fSp--dg~~l~t~s~d~~~~~~ 270 (702)
.-+.|...|..++..--|+.|||++.|+ |+|+...++. ..+..+ +|. .|..++|.. -|.+||+++.|
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD------ 79 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD------ 79 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC------
Confidence 3467888888888888899999999999 8899887444 344444 355 499999976 79999999999
Q ss_pred CCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCcccceEEEcCC-CCcEEEEec-CCeEEEEecCCc-ccccc
Q 005315 271 DANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLG-KNMISVYETESF-TLIDK 345 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~-dg~~la~~~-d~~i~v~d~~~~-~~~~~ 345 (702)
+.|.||.-.+|+ ....+..|...+. +++|.|+ -|-.||+++ ||.|.|.+..+. .-...
T Consensus 80 ----gkVIiWke~~g~w~k~~e~~~h~~SVN-------------sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 80 ----GKVIIWKEENGRWTKAYEHAAHSASVN-------------SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS 142 (299)
T ss_pred ----ceEEEEecCCCchhhhhhhhhhcccce-------------eecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence 999999977774 2344555655543 6777773 456788887 999999987754 22111
Q ss_pred --eeeccCCeeEEEeCCC---C-----------CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEcc
Q 005315 346 --KSLKVENVMDFSWSPT---D-----------PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 409 (702)
Q Consensus 346 --~~~~~~~v~~~~~sp~---~-----------~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 409 (702)
...|.-+|++++|.|. | +.|++ ++.|..++||.++..+...-+....+..-...++|.|
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS-----gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS-----GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeec-----cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence 2347778999999997 4 45777 8899999999988764432222233334444567888
Q ss_pred CC----CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEe
Q 005315 410 SG----DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 485 (702)
Q Consensus 410 ~g----~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 485 (702)
.- .+|++++.+++ +.||..+....+-...-+......+..++||+.|+.|+++.+|. .|.+|.-
T Consensus 218 ~~gl~~s~iAS~SqDg~---------viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN---kvtlwke 285 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGT---------VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN---KVTLWKE 285 (299)
T ss_pred ccCCCceeeEEecCCCc---------EEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc---EEEEEEe
Confidence 64 47888888877 78888775443333233333477899999999999999999998 8999986
Q ss_pred e
Q 005315 486 R 486 (702)
Q Consensus 486 ~ 486 (702)
.
T Consensus 286 ~ 286 (299)
T KOG1332|consen 286 N 286 (299)
T ss_pred C
Confidence 3
No 142
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=5.7e-17 Score=165.30 Aligned_cols=273 Identities=13% Similarity=0.174 Sum_probs=205.3
Q ss_pred CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc--eeeeec-CCC-eeE-EEecCC-CCEEEEEcCCCCC
Q 005315 195 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYA-HPQ-VKL-IDFSPG-EKYLVTYSSHEPS 267 (702)
Q Consensus 195 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~-~~~-v~~-i~fSpd-g~~l~t~s~d~~~ 267 (702)
....+.+|...|..++..+. ..++++++++ +++|+-. ..+ ....+. +.+ |.+ +++-+. +-.|++|+.|
T Consensus 6 ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D--- 80 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD--- 80 (745)
T ss_pred eEEEeccCccchheeEecCC-eEEeecCCCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeeccc---
Confidence 34567899999988887654 4888999888 8899876 333 223332 333 444 777753 3459999999
Q ss_pred CCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccce
Q 005315 268 NPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK 346 (702)
Q Consensus 268 ~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~ 346 (702)
.+|.+|.+.+..++.++.+|...++ ++.-.. ++. +++++ |.+++||-... +....
T Consensus 81 -------~~i~v~~~~~~~P~~~LkgH~snVC-------------~ls~~~-~~~-~iSgSWD~TakvW~~~~--l~~~l 136 (745)
T KOG0301|consen 81 -------TTIIVFKLSQAEPLYTLKGHKSNVC-------------SLSIGE-DGT-LISGSWDSTAKVWRIGE--LVYSL 136 (745)
T ss_pred -------ceEEEEecCCCCchhhhhcccccee-------------eeecCC-cCc-eEecccccceEEecchh--hhccc
Confidence 9999999999999999999998873 344334 555 78888 99999997653 33345
Q ss_pred eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccc
Q 005315 347 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 426 (702)
Q Consensus 347 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 426 (702)
..|...|..+..-|.+ .+++ |++|..+++|.= |..
T Consensus 137 ~gH~asVWAv~~l~e~-~~vT-----gsaDKtIklWk~--------------------------~~~------------- 171 (745)
T KOG0301|consen 137 QGHTASVWAVASLPEN-TYVT-----GSADKTIKLWKG--------------------------GTL------------- 171 (745)
T ss_pred CCcchheeeeeecCCC-cEEe-----ccCcceeeeccC--------------------------Cch-------------
Confidence 6788889999998988 4555 778888776531 110
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--c
Q 005315 427 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--Q 504 (702)
Q Consensus 427 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~ 504 (702)
...+.+|.+.|+.+++-|++ .|++++.|| .|++|++. +. .+..+.+| -
T Consensus 172 -------------------l~tf~gHtD~VRgL~vl~~~-~flScsNDg---~Ir~w~~~-ge------~l~~~~ghtn~ 221 (745)
T KOG0301|consen 172 -------------------LKTFSGHTDCVRGLAVLDDS-HFLSCSNDG---SIRLWDLD-GE------VLLEMHGHTNF 221 (745)
T ss_pred -------------------hhhhccchhheeeeEEecCC-CeEeecCCc---eEEEEecc-Cc------eeeeeeccceE
Confidence 12355899999999998765 578889999 99999993 32 66777776 4
Q ss_pred eeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 505 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 505 v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
++++...+++..+++++. |++++||+........+...-.|+++.+-++|. |++|++ ||.|+||...
T Consensus 222 vYsis~~~~~~~Ivs~gE---DrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~S-----DG~VrVfT~~ 288 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGE---DRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGS-----DGRVRVFTVD 288 (745)
T ss_pred EEEEEecCCCCeEEEecC---CceEEEeecCceEEEEecCccceEEEEEeeCCC-EEEecc-----CceEEEEEec
Confidence 788888888899999998 999999999855444455556788898888887 567777 8999999875
No 143
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=1.9e-17 Score=161.27 Aligned_cols=250 Identities=16% Similarity=0.318 Sum_probs=166.6
Q ss_pred eeeecCCC-eeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCcE----------EeeccCCCcccccCCCCC
Q 005315 238 LMRYAHPQ-VKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKV----------MRDFKGSADEFAVGGTGG 305 (702)
Q Consensus 238 ~~~~~~~~-v~~i~fSpdg~~l-~t~s~d~~~~~~~~~~~~i~vwd~~~g~~----------~~~~~~~~~~~~~~~~~~ 305 (702)
..++.|++ |..+..-|....| |+.+.. +.|.|||..+-.. -..+.+|...-
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~----------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg------- 180 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSS----------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG------- 180 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCC----------CCEEEEEeccCCCcccccccCCCceEEEeecccc-------
Confidence 34455665 8888888887655 455555 7899999743321 12455665521
Q ss_pred CCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccc----cc---ceeeccCCeeEEEeCCCCCeEEEEeecCCCCCC
Q 005315 306 VAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL----ID---KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQ 377 (702)
Q Consensus 306 ~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~----~~---~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~ 377 (702)
. .++|+++..-++++++ +++|.+||+..... +. ....|...|.+++|+|....+... ++.++
T Consensus 181 -~-----glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s----v~dd~ 250 (422)
T KOG0264|consen 181 -Y-----GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS----VGDDG 250 (422)
T ss_pred -c-----ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee----ecCCC
Confidence 1 4677774444666776 99999999885433 11 123355567888888765443321 33333
Q ss_pred CcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCcee
Q 005315 378 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII 457 (702)
Q Consensus 378 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~ 457 (702)
.. .||+++.. .........+|.+.|+
T Consensus 251 ~L-----------------------------------------------------~iwD~R~~-~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 251 KL-----------------------------------------------------MIWDTRSN-TSKPSHSVKAHSAEVN 276 (422)
T ss_pred eE-----------------------------------------------------EEEEcCCC-CCCCcccccccCCcee
Confidence 32 33443321 1111233458899999
Q ss_pred EEEEee-CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCE-EEEEeccCCCceEEEEE
Q 005315 458 AFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRF-IVLAGLKGFNGQLEFYN 533 (702)
Q Consensus 458 ~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~-l~~~~~~~~dg~v~i~d 533 (702)
+++|+| ++..||+++.|+ +|.+||++.... ++.++.+| .|.++.|||.... |++++. |+.+.+||
T Consensus 277 ~~~fnp~~~~ilAT~S~D~---tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg~---D~rl~vWD 345 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADK---TVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSGT---DRRLNVWD 345 (422)
T ss_pred EEEeCCCCCceEEeccCCC---cEEEeechhccc-----CceeccCCCcceEEEEeCCCCCceeEeccc---CCcEEEEe
Confidence 999999 566788888899 999999987654 67777766 6999999998654 555555 99999999
Q ss_pred CCCc--------------cee--eecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccce
Q 005315 534 VDEL--------------ETM--ATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL 583 (702)
Q Consensus 534 ~~~~--------------~~~--~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~ 583 (702)
+... +++ .-+|...|+++.|+|+-.+++++... ||.+.||.....+
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae----DN~LqIW~~s~~i 407 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE----DNILQIWQMAENI 407 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC----CceEEEeeccccc
Confidence 9731 122 23677899999999998876555543 9999999976443
No 144
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=3.8e-17 Score=152.16 Aligned_cols=324 Identities=15% Similarity=0.247 Sum_probs=203.4
Q ss_pred ceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc--eEEeecCcCcceeeeecCCCeeEEE
Q 005315 173 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG--AAVWGGANTFNRLMRYAHPQVKLID 250 (702)
Q Consensus 173 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~~v~~i~ 250 (702)
.++.+.+.++.+-.|... ..+-.-.+........+++|||||+.|...+.-. |.||.+.++.-........++..++
T Consensus 62 ~ilC~~yk~~~vqvwsl~-Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~ 140 (447)
T KOG4497|consen 62 HILCVAYKDPKVQVWSLV-QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYA 140 (447)
T ss_pred eeeeeeeccceEEEEEee-cceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEE
Confidence 355666777788899882 3333344566678899999999998777766544 7799998333333333444699999
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--
Q 005315 251 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-- 328 (702)
Q Consensus 251 fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-- 328 (702)
|+|||++.+.++..+.. ..+.|.....-..++.|.......+ .+.||| ||..||...
T Consensus 141 f~~dg~f~ai~sRrDCk-------dyv~i~~c~~W~ll~~f~~dT~Dlt-------------gieWsP-dg~~laVwd~~ 199 (447)
T KOG4497|consen 141 FHPDGQFCAILSRRDCK-------DYVQISSCKAWILLKEFKLDTIDLT-------------GIEWSP-DGNWLAVWDNV 199 (447)
T ss_pred ECCCCceeeeeecccHH-------HHHHHHhhHHHHHHHhcCCCccccc-------------CceECC-CCcEEEEecch
Confidence 99999999988865111 1233333334445666666554432 679999 999988665
Q ss_pred -CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEE
Q 005315 329 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 407 (702)
Q Consensus 329 -d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (702)
+-.|..|.-. -++..++|+|.+++|++ |+.|+..||... +.|
T Consensus 200 Leykv~aYe~~------------lG~k~v~wsP~~qflav-----GsyD~~lrvlnh--------------------~tW 242 (447)
T KOG4497|consen 200 LEYKVYAYERG------------LGLKFVEWSPCNQFLAV-----GSYDQMLRVLNH--------------------FTW 242 (447)
T ss_pred hhheeeeeeec------------cceeEEEeccccceEEe-----eccchhhhhhce--------------------eee
Confidence 3444444322 35788999999999999 888887775321 122
Q ss_pred ccCCCEEEEEEcccccc-------------------cccccccEEEEEEec-----CCcceeEEE------ecCCCCcee
Q 005315 408 QSSGDYLAVKVDRYTKT-------------------KKSTYTGFELFRIKE-----RDIPIEVLE------LDNKNDKII 457 (702)
Q Consensus 408 s~~g~~l~~~~~~~~~~-------------------~~~~~~~~~l~~l~~-----~~~~~~~~~------l~~h~~~v~ 457 (702)
.+-|.++-..+-+.... ......+..+|...+ ...++.... .++..-.+.
T Consensus 243 k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g 322 (447)
T KOG4497|consen 243 KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAG 322 (447)
T ss_pred eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccc
Confidence 22222211111100000 000000001111110 001111111 112244566
Q ss_pred EEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE-cCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 458 AFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 458 ~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
-++||+|..++|+....-+ +.+.+||++..+ .... ...++|..+.|.|....|+++.. ...+++|....
T Consensus 323 ~lafs~Ds~y~aTrnd~~P-nalW~Wdlq~l~------l~avLiQk~piraf~WdP~~prL~vctg---~srLY~W~psg 392 (447)
T KOG4497|consen 323 KLAFSCDSTYAATRNDKYP-NALWLWDLQNLK------LHAVLIQKHPIRAFEWDPGRPRLVVCTG---KSRLYFWAPSG 392 (447)
T ss_pred eeeecCCceEEeeecCCCC-ceEEEEechhhh------hhhhhhhccceeEEEeCCCCceEEEEcC---CceEEEEcCCC
Confidence 7999999999998776544 389999996432 2222 23578999999999988888876 67899999987
Q ss_pred cceeee-cccCceeeeEECCCCCEEEEEEe
Q 005315 537 LETMAT-AEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 537 ~~~~~~-~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
...+.. .....|..+.|.-+|.+++..+.
T Consensus 393 ~~~V~vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 393 PRVVGVPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred ceEEecCCCCceeeeEEecCCCcEEEEEcC
Confidence 666654 45588999999999999998887
No 145
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=2.8e-17 Score=166.27 Aligned_cols=315 Identities=14% Similarity=0.168 Sum_probs=221.0
Q ss_pred eEEEC-CCCcEEEEEeCCc-eEEeecCcCcc-----eeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005315 208 FVQWS-PLGTYLATVHRQG-AAVWGGANTFN-----RLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 278 (702)
Q Consensus 208 ~v~~S-pdg~~lat~~~~~-i~iw~~~~~~~-----~~~~~-~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~ 278 (702)
.++.+ |.|+||.||+.|| |++|+...... .+.++ +|.+ |..+...-+|+.|+++|.| .+|+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsD----------tTVK 98 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSD----------TTVK 98 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCC----------ceEE
Confidence 45555 5678899999999 77998762211 24444 3444 9999999999999999999 9999
Q ss_pred EEEccCC--cEEeeccCCCcccccCCCCCCCCcccceEEE-cCCCCcEEEEec-CCeEEEEecCCcc--cccce------
Q 005315 279 IFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRW-GGGKDKYFAKLG-KNMISVYETESFT--LIDKK------ 346 (702)
Q Consensus 279 vwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-s~~dg~~la~~~-d~~i~v~d~~~~~--~~~~~------ 346 (702)
+|+...+ -++.++..|.+-+. |++. .+ +...+|+++ |+.|.+||+.++. ++...
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVk-------------cla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVK-------------CLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred EeecccCcchhHhhhhcccchhe-------------eeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 9999877 57888888888764 7777 66 888899999 9999999999772 22211
Q ss_pred ---eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccc
Q 005315 347 ---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 423 (702)
Q Consensus 347 ---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 423 (702)
..+..+|.+++-++.|..|+. |+..+.. .+|+..+.+.+-....+..+...+..+++|..+++++.+++
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivs-----Ggtek~l--r~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt- 236 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVS-----GGTEKDL--RLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT- 236 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEe-----cCcccce--EEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-
Confidence 134456899999999977777 5555554 45666555544333345555556678999999999999988
Q ss_pred ccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC
Q 005315 424 TKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK 503 (702)
Q Consensus 424 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 503 (702)
+++|++....+ ..++..|...|.++..+|+=+.+++|+.++ .|..-|+++... +..+. -+.+
T Consensus 237 --------IrlWdLgqQrC---l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~---~i~~Tdl~n~~~---~tlic-k~da 298 (735)
T KOG0308|consen 237 --------IRLWDLGQQRC---LATYIVHKEGVWALQSSPSFTHVYSGGRDG---NIYRTDLRNPAK---STLIC-KEDA 298 (735)
T ss_pred --------EEeeeccccce---eeeEEeccCceEEEeeCCCcceEEecCCCC---cEEecccCCchh---heEee-cCCC
Confidence 89999986443 344667889999999999999999999999 888888865421 11221 1245
Q ss_pred ceeEEEEccCCCEEEEEeccCCCceEEEEECCC-------cceee------------------e-cccCceeeeEECCCC
Q 005315 504 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE-------LETMA------------------T-AEHFMATDVEWDPTG 557 (702)
Q Consensus 504 ~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~-------~~~~~------------------~-~~~~~i~~~~~spdg 557 (702)
++..+..+-+..-+-+++. |+.|+-|...- +.+.. . .....+...+.-.|-
T Consensus 299 Pv~~l~~~~~~~~~WvtTt---ds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dk 375 (735)
T KOG0308|consen 299 PVLKLHLHEHDNSVWVTTT---DSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDK 375 (735)
T ss_pred chhhhhhccccCCceeeec---cccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCc
Confidence 6666665533333333444 67777775541 11000 0 111234445566678
Q ss_pred CEEEEEEeecccccccEEEEEec
Q 005315 558 RYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 558 ~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
|+++|-.. .|.+.+||+-
T Consensus 376 RhVlTkDa-----~gnv~lwDIl 393 (735)
T KOG0308|consen 376 RHVLTKDA-----KGNVALWDIL 393 (735)
T ss_pred ceEeeecC-----CCCEEEEEee
Confidence 88999888 8999999974
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=1.2e-16 Score=148.68 Aligned_cols=266 Identities=16% Similarity=0.259 Sum_probs=181.1
Q ss_pred eEEECCCCcEEEEEeCCc-eEEeecCcCc-------------ceeeeecCCC-eeEEEec-------CCCCEEEEEcCCC
Q 005315 208 FVQWSPLGTYLATVHRQG-AAVWGGANTF-------------NRLMRYAHPQ-VKLIDFS-------PGEKYLVTYSSHE 265 (702)
Q Consensus 208 ~v~~Spdg~~lat~~~~~-i~iw~~~~~~-------------~~~~~~~~~~-v~~i~fS-------pdg~~l~t~s~d~ 265 (702)
.+.|||||+.|.+-+.+. +.+|+++... ....++..+. |...+|- |+..++|+.+.+
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~- 132 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD- 132 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc-
Confidence 478999999999888777 7899876111 1112222333 6666664 777889998888
Q ss_pred CCCCcCCCccEEEEEEccCCcEEeeccCCC--cccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEec-CCccc
Q 005315 266 PSNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYET-ESFTL 342 (702)
Q Consensus 266 ~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~-~~~~~ 342 (702)
.-|.+||.-+|+...++..-. ..+ ++.. +++||| ||.+|..+..+.|+|+++ +.|.-
T Consensus 133 ---------~PIh~wdaftG~lraSy~~ydh~de~--------taAh--sL~Fs~-DGeqlfaGykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 133 ---------QPIHLWDAFTGKLRASYRAYDHQDEY--------TAAH--SLQFSP-DGEQLFAGYKRCIRVFDTSRPGRD 192 (406)
T ss_pred ---------CceeeeeccccccccchhhhhhHHhh--------hhhe--eEEecC-CCCeEeecccceEEEeeccCCCCC
Confidence 679999999999887776532 222 1111 799999 999999999999999998 34432
Q ss_pred ccce-------eeccCCeeEEEeCCCCC-eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEE
Q 005315 343 IDKK-------SLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYL 414 (702)
Q Consensus 343 ~~~~-------~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 414 (702)
.... ....+-+.+++|+|... .+++ ++-.+..-|+.++ +.
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~-----gsY~q~~giy~~~-------------------------~~-- 240 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV-----GSYGQRVGIYNDD-------------------------GR-- 240 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceee-----ecccceeeeEecC-------------------------CC--
Confidence 2111 11123367888888765 5565 3333332222111 00
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCce
Q 005315 415 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 494 (702)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 494 (702)
.| ...+-+|.+.|+.+.|.++|+.|.+++.... .|..||++....
T Consensus 241 ---------------------------~p--l~llggh~gGvThL~~~edGn~lfsGaRk~d--kIl~WDiR~~~~---- 285 (406)
T KOG2919|consen 241 ---------------------------RP--LQLLGGHGGGVTHLQWCEDGNKLFSGARKDD--KILCWDIRYSRD---- 285 (406)
T ss_pred ---------------------------Cc--eeeecccCCCeeeEEeccCcCeecccccCCC--eEEEEeehhccc----
Confidence 11 1223478999999999999999999987442 799999975432
Q ss_pred EEEEEcCCC-----ceeEEEEccCCCEEEEEeccCCCceEEEEECCC-cceee--ecccCceeeeEECCCCCEEEEEEe
Q 005315 495 SKLTTLKGK-----QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE-LETMA--TAEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 495 ~~~~~~~~~-----~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~-~~~~~--~~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
++..+..+ +.--+...|+|++|++|+. +|.|++||+++ +.... ..+...++.++++|-=..+|+++.
T Consensus 286 -pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t---dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 286 -PVYALERHVGDTNQRILFDLDPKGEILASGDT---DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred -hhhhhhhhccCccceEEEecCCCCceeeccCC---CccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 44444433 2334667899999999987 99999999996 44222 245577889999999777888776
No 147
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.77 E-value=9.5e-17 Score=170.45 Aligned_cols=261 Identities=14% Similarity=0.170 Sum_probs=198.5
Q ss_pred EEEEeCCceEEEecCCCCCCCccc-ccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CCC-eeEEE
Q 005315 175 FVIRSGTDTEVLWNDARHLKPEPV-YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLID 250 (702)
Q Consensus 175 ~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~ 250 (702)
++.+..+.+..+|+. ..+..+.. +.+|.+.|+++++..-+.+|++|+.|. ++|||.. ++.+...+. |.. |.++.
T Consensus 221 ~~~~s~~~tl~~~~~-~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l~gh~stv~~~~ 298 (537)
T KOG0274|consen 221 FKSGSDDSTLHLWDL-NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSLQGHTSSVRCLT 298 (537)
T ss_pred EEecCCCceeEEeec-ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEecCCCceEEEEE
Confidence 344455666669998 45555555 999999999999998888999999998 8899988 999998885 555 77776
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C
Q 005315 251 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K 329 (702)
Q Consensus 251 fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d 329 (702)
. .+.++++|+.| .+|+||++.++..+..+.+|...+. ++. - ++.++++++ |
T Consensus 299 ~--~~~~~~sgs~D----------~tVkVW~v~n~~~l~l~~~h~~~V~-------------~v~--~-~~~~lvsgs~d 350 (537)
T KOG0274|consen 299 I--DPFLLVSGSRD----------NTVKVWDVTNGACLNLLRGHTGPVN-------------CVQ--L-DEPLLVSGSYD 350 (537)
T ss_pred c--cCceEeeccCC----------ceEEEEeccCcceEEEeccccccEE-------------EEE--e-cCCEEEEEecC
Confidence 6 45678889999 9999999999999999999877763 344 3 678899888 9
Q ss_pred CeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEcc
Q 005315 330 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 409 (702)
Q Consensus 330 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 409 (702)
++|.||++.+++++.....|...|.++.+.+. ..++. |+.|..+++|.+.... +
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~S-----gs~D~~IkvWdl~~~~-~------------------- 404 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLS-----GSLDTTIKVWDLRTKR-K------------------- 404 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEe-----eeeccceEeecCCchh-h-------------------
Confidence 99999999999999999899999999977765 56666 6667666654433211 0
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeeccc
Q 005315 410 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 489 (702)
Q Consensus 410 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 489 (702)
....+.+|...+..+.+ .+++|++++.|+ .|++||..++.
T Consensus 405 -----------------------------------c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~---~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 405 -----------------------------------CIHTLQGHTSLVSSLLL--RDNFLVSSSADG---TIKLWDAEEGE 444 (537)
T ss_pred -----------------------------------hhhhhcCCccccccccc--ccceeEeccccc---cEEEeecccCc
Confidence 11234455666644443 678899999999 99999997765
Q ss_pred CcCceEEEEEcCC---CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee
Q 005315 490 HAGRVSKLTTLKG---KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 542 (702)
Q Consensus 490 ~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~ 542 (702)
.+..+.+ ..+..+++. -..+++++. +|.+++||+.+++....
T Consensus 445 ------~~~~~~~~~~~~v~~l~~~--~~~il~s~~---~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 445 ------CLRTLEGRHVGGVSALALG--KEEILCSSD---DGSVKLWDLRSGTLIRT 489 (537)
T ss_pred ------eeeeeccCCcccEEEeecC--cceEEEEec---CCeeEEEecccCchhhh
Confidence 5666655 245666655 356666666 99999999998877653
No 148
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=7.3e-18 Score=170.40 Aligned_cols=242 Identities=14% Similarity=0.234 Sum_probs=178.9
Q ss_pred EEEec-CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc------EEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 248 LIDFS-PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 248 ~i~fS-pdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
.+..+ |.++||+||+.| |.|++|++..-. .+.++..|.+-+. .+.... +
T Consensus 29 ~Lq~da~~~ryLfTgGRD----------g~i~~W~~~~d~~~~s~~~~asme~HsDWVN-------------DiiL~~-~ 84 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRD----------GIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-------------DIILCG-N 84 (735)
T ss_pred hccccCCCCceEEecCCC----------ceEEEeccccccCCcccchhhhhhhhHhHHh-------------hHHhhc-C
Confidence 33444 567899999999 999999975332 2556666655432 345556 8
Q ss_pred CcEEEEec-CCeEEEEecCCcc--cccceeeccCCeeEEEe-CCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeee
Q 005315 321 DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSW-SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 396 (702)
Q Consensus 321 g~~la~~~-d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~-sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 396 (702)
++.|++++ |-+|++|+...+. +......|...|.+++. .++...+|+ ||-|+.+.+|.++....+.+...+
T Consensus 85 ~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaS-----gGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 85 GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVAS-----GGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEe-----cCCCccEEEEEccCcchhhhhhcc
Confidence 88888888 9999999998763 34444567788999999 777777787 666766665555432211111100
Q ss_pred ecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-CCCCceeEEEEeeCCcEEEEEEcCC
Q 005315 397 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIHGDS 475 (702)
Q Consensus 397 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~ 475 (702)
.. + ...+. ++..+|.+++.++.|..|+.|+..+
T Consensus 160 --~~------------------------------------------t--~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 160 --NV------------------------------------------T--VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred --cc------------------------------------------c--cccCCCCCccceeeeecCCcceEEEecCccc
Confidence 00 0 01111 6688999999999998888888888
Q ss_pred CCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeee
Q 005315 476 PRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDV 551 (702)
Q Consensus 476 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~ 551 (702)
.+++||.++.. .+..+.+| .|..+..++||+.+++++. ||+|++||+...+++.+ .|...++++
T Consensus 194 ---~lr~wDprt~~------kimkLrGHTdNVr~ll~~dDGt~~ls~sS---DgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 194 ---DLRLWDPRTCK------KIMKLRGHTDNVRVLLVNDDGTRLLSASS---DGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred ---ceEEecccccc------ceeeeeccccceEEEEEcCCCCeEeecCC---CceEEeeeccccceeeeEEeccCceEEE
Confidence 89999998765 56666666 6899999999999999998 99999999998888876 566779999
Q ss_pred EECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 552 EWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 552 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
.-+|+=.++++|+. |+.|..-++..
T Consensus 262 ~~~~sf~~vYsG~r-----d~~i~~Tdl~n 286 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGR-----DGNIYRTDLRN 286 (735)
T ss_pred eeCCCcceEEecCC-----CCcEEecccCC
Confidence 99999999999999 88888777653
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=7.3e-16 Score=142.67 Aligned_cols=253 Identities=16% Similarity=0.316 Sum_probs=167.3
Q ss_pred cCCCcccceEEECCCCcEEEEEeCCc-eEEeecC---cCcceeeeec-CC-CeeEEEecCC--CCEEEEEcCCCCCCCcC
Q 005315 200 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA---NTFNRLMRYA-HP-QVKLIDFSPG--EKYLVTYSSHEPSNPRD 271 (702)
Q Consensus 200 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~---~~~~~~~~~~-~~-~v~~i~fSpd--g~~l~t~s~d~~~~~~~ 271 (702)
.+|..-|+|+.|.+-|+.+|+++.|+ +.|||.. +++.+..... |. .|..+.|.+- |+.+|+++.|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D------- 82 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD------- 82 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC-------
Confidence 57888899999999999999999998 8999943 2344444442 44 4999999764 8999999999
Q ss_pred CCccEEEEEEccC------C---cEEeeccCCCcccccCCCCCCCCcccceEEEcCC-CCcEEEEec-CCeEEEEecCCc
Q 005315 272 ANRVVINIFDVRT------G---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLG-KNMISVYETESF 340 (702)
Q Consensus 272 ~~~~~i~vwd~~~------g---~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~-dg~~la~~~-d~~i~v~d~~~~ 340 (702)
+++.||.=.. | ....++......++ .++|.|. -|-.+|+++ ||.++||+++.-
T Consensus 83 ---rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~-------------DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 83 ---RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVT-------------DVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred ---CceeeeeecccccccccceeEEEEEeecCCccee-------------EEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 9999997410 1 12334444444332 6788872 456788888 999999998743
Q ss_pred cccc------cee-------eccCCeeEEEeCCC---CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccce
Q 005315 341 TLID------KKS-------LKVENVMDFSWSPT---DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 404 (702)
Q Consensus 341 ~~~~------~~~-------~~~~~v~~~~~sp~---~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 404 (702)
.-+. ... .+.....++.|+|. .++||+
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv------------------------------------- 189 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV------------------------------------- 189 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE-------------------------------------
Confidence 2221 111 01122455666654 234444
Q ss_pred eEEccCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCCCCceeEEEEeeC----CcEEEEEEcCCCCCe
Q 005315 405 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNKNDKIIAFAWEPK----GHRFAVIHGDSPRPD 479 (702)
Q Consensus 405 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h~~~v~~~~~sp~----g~~l~~~~~d~~~~~ 479 (702)
+++... .......||...+.+.. ...-++.+|..+|++++|.|+ -..||+++.||
T Consensus 190 ------------gs~e~a----~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg---- 249 (361)
T KOG2445|consen 190 ------------GSDEDA----PHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG---- 249 (361)
T ss_pred ------------EcccCC----ccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc----
Confidence 222210 00011344444443322 122346688999999999995 35788888887
Q ss_pred EEEEEeeccc--------------CcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 480 ISFYSMRTAQ--------------HAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 480 v~i~d~~~~~--------------~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
|+||.++... ....+..+..+.+| ++..+.|+-.|..|.+.+. ||.|++|...
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd---DG~VRLWkan 318 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD---DGCVRLWKAN 318 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC---Cceeeehhhh
Confidence 9999997311 12334566666666 6899999999999999988 9999999765
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.75 E-value=1.7e-16 Score=155.50 Aligned_cols=285 Identities=13% Similarity=0.222 Sum_probs=186.1
Q ss_pred EEEEeCCceEEEecCCCCCCCcccccCC--CcccceEEECCCCcEEEEEe--CCc-eEEeecCcC---cceeeeecCCCe
Q 005315 175 FVIRSGTDTEVLWNDARHLKPEPVYKRS--YWTESFVQWSPLGTYLATVH--RQG-AAVWGGANT---FNRLMRYAHPQV 246 (702)
Q Consensus 175 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~v~~v~~Spdg~~lat~~--~~~-i~iw~~~~~---~~~~~~~~~~~v 246 (702)
.++..|+ .+.+|+.. .......+-.| ...+.+++|+.... |++++ .+. +++|.-.+. -.++.......-
T Consensus 6 ~~aS~gd-~~kl~D~s-~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~ 82 (673)
T KOG4378|consen 6 HVASTGD-KTKLSDFS-DLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNA 82 (673)
T ss_pred eeeccCC-ceEEeecc-cccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchH
Confidence 3444444 45588862 22222223222 23489999998764 55554 444 568865522 112222223333
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEE
Q 005315 247 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 326 (702)
Q Consensus 247 ~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~ 326 (702)
.|++......|+++|+.. ++|+|||++...+.+.++.|...++ ++.++- .+.|||+
T Consensus 83 ~Cv~~~s~S~y~~sgG~~----------~~Vkiwdl~~kl~hr~lkdh~stvt-------------~v~YN~-~DeyiAs 138 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQS----------GCVKIWDLRAKLIHRFLKDHQSTVT-------------YVDYNN-TDEYIAS 138 (673)
T ss_pred HHHhhhhcceeeeccCcC----------ceeeehhhHHHHHhhhccCCcceeE-------------EEEecC-CcceeEE
Confidence 333333334899999999 9999999997778888999987764 778888 8899999
Q ss_pred ec-CCeEEEEecCCcccccceeeccC-CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccce
Q 005315 327 LG-KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 404 (702)
Q Consensus 327 ~~-d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 404 (702)
++ .|.|.|..+.++.....+....+ .|.-+.+||..+++... ++.++.+.
T Consensus 139 vs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~----asd~G~Vt------------------------ 190 (673)
T KOG4378|consen 139 VSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSI----ASDKGAVT------------------------ 190 (673)
T ss_pred eccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEe----eccCCeEE------------------------
Confidence 99 89999999887755443332222 35567777776665542 23333333
Q ss_pred eEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC-cEEEEEEcCCCCCeEEEE
Q 005315 405 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFY 483 (702)
Q Consensus 405 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~ 483 (702)
+|++....... --...|..+...++|+|.. ..|++.+.|. .|.+|
T Consensus 191 -----------------------------lwDv~g~sp~~--~~~~~HsAP~~gicfspsne~l~vsVG~Dk---ki~~y 236 (673)
T KOG4378|consen 191 -----------------------------LWDVQGMSPIF--HASEAHSAPCRGICFSPSNEALLVSVGYDK---KINIY 236 (673)
T ss_pred -----------------------------EEeccCCCccc--chhhhccCCcCcceecCCccceEEEecccc---eEEEe
Confidence 33332211100 0123678889999999955 5566667788 99999
Q ss_pred EeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce---eeecccCceeeeEECCCC
Q 005315 484 SMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDPTG 557 (702)
Q Consensus 484 d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~---~~~~~~~~i~~~~~spdg 557 (702)
|..... ....+. .++...++|+++|.+|+.|+. .|.|..||++..+. +...|...|++++|-|.-
T Consensus 237 D~~s~~------s~~~l~y~~Plstvaf~~~G~~L~aG~s---~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 237 DIRSQA------STDRLTYSHPLSTVAFSECGTYLCAGNS---KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eccccc------ccceeeecCCcceeeecCCceEEEeecC---CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 997543 222222 578999999999999999988 99999999985432 334677889999997763
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=1.1e-16 Score=149.45 Aligned_cols=311 Identities=10% Similarity=0.155 Sum_probs=217.2
Q ss_pred cCCCcccceEEECC-----CCcEEEEEeCCceEEeecCcCc--ceeeeec---CC-CeeEEEecCC----CCEEEEEcCC
Q 005315 200 KRSYWTESFVQWSP-----LGTYLATVHRQGAAVWGGANTF--NRLMRYA---HP-QVKLIDFSPG----EKYLVTYSSH 264 (702)
Q Consensus 200 ~~~~~~v~~v~~Sp-----dg~~lat~~~~~i~iw~~~~~~--~~~~~~~---~~-~v~~i~fSpd----g~~l~t~s~d 264 (702)
..|+..+..++|.+ .-..+|+.+.+.+.+|...+.+ ..+.++. ++ ....++|+-+ ..+||.++.-
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 46778888999985 2357888888888899776333 3344442 23 2677888764 3588888888
Q ss_pred CCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccc
Q 005315 265 EPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI 343 (702)
Q Consensus 265 ~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~ 343 (702)
|.|+|.|+.++++...+.+|...+. .+++.|.+.+++++++ |..|++|++.++.++
T Consensus 115 ----------GvIrVid~~~~~~~~~~~ghG~sIN-------------eik~~p~~~qlvls~SkD~svRlwnI~~~~Cv 171 (385)
T KOG1034|consen 115 ----------GVIRVIDVVSGQCSKNYRGHGGSIN-------------EIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV 171 (385)
T ss_pred ----------eEEEEEecchhhhccceeccCccch-------------hhhcCCCCCcEEEEecCCceEEEEeccCCeEE
Confidence 9999999999999999999988764 6888983446888888 999999999998876
Q ss_pred cce---eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcc
Q 005315 344 DKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 344 ~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 420 (702)
... ..|-..|.++.|+++|.+|++ +|.|...++|.++.+..... -.+.+.|+|++...-+.+..
T Consensus 172 ~VfGG~egHrdeVLSvD~~~~gd~i~S-----cGmDhslk~W~l~~~~f~~~--------lE~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 172 AVFGGVEGHRDEVLSVDFSLDGDRIAS-----CGMDHSLKLWRLNVKEFKNK--------LELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred EEecccccccCcEEEEEEcCCCCeeec-----cCCcceEEEEecChhHHhhh--------hhhhcccCCCCccCcCCccc
Confidence 433 346677999999999999999 88999988888775543321 11223466665432111000
Q ss_pred cccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeec-cc-------CcC
Q 005315 421 YTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT-AQ-------HAG 492 (702)
Q Consensus 421 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~-~~-------~~~ 492 (702)
..+.+.. +-.-|..+|-++.|- |+++++-+.++ .|..|..-. .+ ...
T Consensus 239 -----------~~fp~fs---------t~diHrnyVDCvrw~--gd~ilSkscen---aI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 239 -----------THFPDFS---------TTDIHRNYVDCVRWF--GDFILSKSCEN---AIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred -----------ccccccc---------ccccccchHHHHHHH--hhheeecccCc---eEEEEecchhhhhhhccCCCcc
Confidence 0111110 122467888888884 67788777777 888998721 11 111
Q ss_pred ceEEEEEcCC--Ccee--EEEEccCCCEEEEEeccCCCceEEEEECCCcce------eeecccCceeeeEECCCCCEEEE
Q 005315 493 RVSKLTTLKG--KQAN--ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET------MATAEHFMATDVEWDPTGRYVAT 562 (702)
Q Consensus 493 ~~~~~~~~~~--~~v~--~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~------~~~~~~~~i~~~~~spdg~~l~t 562 (702)
....+.++.- ..+. .++|.|-++.||++.. .|.|.+||++.... ........|...+||.||..|+.
T Consensus 294 ~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq---~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~ 370 (385)
T KOG1034|consen 294 ATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ---SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVL 370 (385)
T ss_pred ceeeeeEeccCccceEEEEEeecHHHHHHhhccC---CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEE
Confidence 2233444432 2343 3566788999999988 99999999985433 22233467889999999999999
Q ss_pred EEeecccccccEEEEEe
Q 005315 563 AVTSVHEMENGFNIWSF 579 (702)
Q Consensus 563 ~s~~~~~~d~~v~iw~~ 579 (702)
... |++|.-||.
T Consensus 371 vcd-----d~~Vwrwdr 382 (385)
T KOG1034|consen 371 VCD-----DGTVWRWDR 382 (385)
T ss_pred EeC-----CCcEEEEEe
Confidence 999 899998884
No 152
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=6.8e-17 Score=166.71 Aligned_cols=234 Identities=16% Similarity=0.326 Sum_probs=173.7
Q ss_pred cccceEEECC-CCcEEEEEeCCc-eEEeecCcC---cceeeee-cCC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCcc
Q 005315 204 WTESFVQWSP-LGTYLATVHRQG-AAVWGGANT---FNRLMRY-AHP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRV 275 (702)
Q Consensus 204 ~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~---~~~~~~~-~~~-~v~~i~fSpdg-~~l~t~s~d~~~~~~~~~~~ 275 (702)
.++..|.|+. +.++|||++.+| |.+||+. . .+.+..| .|. .+.++.|++-. .+|++|+.| |
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln-k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQD----------g 156 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLN-KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQD----------G 156 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecC-ccccchhhhHhhhhccceeeeeeccCCccEEEecCCC----------c
Confidence 3566788874 567999999999 7799998 4 3344444 344 59999999976 678899999 9
Q ss_pred EEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc-cccceeeccCCe
Q 005315 276 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSLKVENV 353 (702)
Q Consensus 276 ~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~-~~~~~~~~~~~v 353 (702)
+|++||++..+...++.+....+. .++|+|..+.+|+++. .|.+++||++... ...++..|.+.|
T Consensus 157 ~vK~~DlR~~~S~~t~~~nSESiR-------------DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV 223 (839)
T KOG0269|consen 157 TVKCWDLRSKKSKSTFRSNSESIR-------------DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV 223 (839)
T ss_pred eEEEEeeecccccccccccchhhh-------------ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence 999999999888888887655543 6899996677888888 8999999998543 444556789999
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEE
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 433 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 433 (702)
.++.|+|++.+||+ ||.|+.++||.+..+..+.+...+ ......++.|-|.-.+.+..+.-.. -..+.
T Consensus 224 ~c~nwhPnr~~lAT-----GGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~------dtsV~ 291 (839)
T KOG0269|consen 224 LCLNWHPNREWLAT-----GGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVV------DTSVH 291 (839)
T ss_pred EEEeecCCCceeee-----cCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccc------cceEE
Confidence 99999999999999 999999999988865554433222 1123345689998776444322111 13489
Q ss_pred EEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCC
Q 005315 434 LFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDS 475 (702)
Q Consensus 434 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~ 475 (702)
+|+++.+-+|.. .+..|...++.++|.. +-..|.+++.|+
T Consensus 292 VWDvrRPYIP~~--t~~eH~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 292 VWDVRRPYIPYA--TFLEHTDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred EEeeccccccce--eeeccCccccceeccCCCceeeEeecCcc
Confidence 999998877764 4557899999999965 344555566666
No 153
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=7e-15 Score=139.81 Aligned_cols=235 Identities=14% Similarity=0.247 Sum_probs=171.3
Q ss_pred CcccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005315 203 YWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 280 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~--v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vw 280 (702)
..++.+..|..++..|..|+.+|..++... ...........+ |--+-||. ..+|..+.+.+ ..+++.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~-~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qp--------r~Lkv~ 73 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCS-PFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQP--------RKLKVV 73 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecC-chHHhhcccCCCeEEEEeeccc--ceeEEEecCCC--------ceEEEE
Confidence 346778889999999999999999999988 555533333334 66667765 45555555421 579999
Q ss_pred EccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeec---cCCeeEEE
Q 005315 281 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLK---VENVMDFS 357 (702)
Q Consensus 281 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~---~~~v~~~~ 357 (702)
+++.+..+..+..+.... +++++. +.|+.+-...|+|||+.++++++..... ..++..++
T Consensus 74 ~~Kk~~~ICe~~fpt~IL--------------~VrmNr---~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 74 HFKKKTTICEIFFPTSIL--------------AVRMNR---KRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred EcccCceEEEEecCCceE--------------EEEEcc---ceEEEEEcccEEEEecccceeehhhhccCCCccceEeec
Confidence 998888887777665544 566644 6666666566999999999998765433 33577777
Q ss_pred eCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEE
Q 005315 358 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 437 (702)
Q Consensus 358 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 437 (702)
.++.+.+||+ .+.-..+.|.+|+..+.+
T Consensus 137 ~n~~n~ylAy-----p~s~t~GdV~l~d~~nl~----------------------------------------------- 164 (391)
T KOG2110|consen 137 PNNANCYLAY-----PGSTTSGDVVLFDTINLQ----------------------------------------------- 164 (391)
T ss_pred cCCCCceEEe-----cCCCCCceEEEEEcccce-----------------------------------------------
Confidence 7777788888 333334444444332111
Q ss_pred ecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC----ceeEEEEccC
Q 005315 438 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK----QANALFWSPS 513 (702)
Q Consensus 438 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~----~v~~~~~spd 513 (702)
....+.+|.+.+-+++|+|+|.+||+++..|. -|++|.+.+++ .+..+..+ .|.+++|+|+
T Consensus 165 -------~v~~I~aH~~~lAalafs~~G~llATASeKGT--VIRVf~v~~G~------kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 165 -------PVNTINAHKGPLAALAFSPDGTLLATASEKGT--VIRVFSVPEGQ------KLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred -------eeeEEEecCCceeEEEECCCCCEEEEeccCce--EEEEEEcCCcc------EeeeeeCCceeeEEEEEEECCC
Confidence 11335589999999999999999999999884 78999997765 66666643 5789999999
Q ss_pred CCEEEEEeccCCCceEEEEECC
Q 005315 514 GRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 514 g~~l~~~~~~~~dg~v~i~d~~ 535 (702)
+++|++.+. .++|++|.++
T Consensus 230 s~~L~~sS~---TeTVHiFKL~ 248 (391)
T KOG2110|consen 230 SQFLAASSN---TETVHIFKLE 248 (391)
T ss_pred CCeEEEecC---CCeEEEEEec
Confidence 999999987 8999999886
No 154
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.7e-15 Score=143.24 Aligned_cols=294 Identities=19% Similarity=0.321 Sum_probs=175.8
Q ss_pred eEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCC-CcEEEEEeCCceEEeecCcCcc--e---------eeee
Q 005315 174 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPL-GTYLATVHRQGAAVWGGANTFN--R---------LMRY 241 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~i~iw~~~~~~~--~---------~~~~ 241 (702)
.|++...+.++.+++.. ...+...-...+..|+|++|-|. ++-||.++..||.||....+.. + ...+
T Consensus 112 ~fava~nddvVriy~ks-st~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKS-STCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhhhccCcEEEEeccC-CCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhe
Confidence 45667778888888873 33333322344578999999996 5689999999999997652111 1 1111
Q ss_pred ---cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcC
Q 005315 242 ---AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 318 (702)
Q Consensus 242 ---~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~ 318 (702)
+|..|++++|.+||..|++++.+. ..|.|||+.+|..+.......+.++ .++|||
T Consensus 191 ~~pgh~pVtsmqwn~dgt~l~tAS~gs---------ssi~iWdpdtg~~~pL~~~glgg~s-------------lLkwSP 248 (445)
T KOG2139|consen 191 QDPGHNPVTSMQWNEDGTILVTASFGS---------SSIMIWDPDTGQKIPLIPKGLGGFS-------------LLKWSP 248 (445)
T ss_pred eCCCCceeeEEEEcCCCCEEeecccCc---------ceEEEEcCCCCCcccccccCCCcee-------------eEEEcC
Confidence 233499999999999999999762 6899999999987665533333322 689999
Q ss_pred CCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee
Q 005315 319 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 397 (702)
Q Consensus 319 ~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 397 (702)
|+.+|..+. |+..++|+........+-....+.|+..+|+|.|.+|.+.+ .+..+++....+.......
T Consensus 249 -dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~------sgsp~lysl~f~~~~~~~~--- 318 (445)
T KOG2139|consen 249 -DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC------SGSPRLYSLTFDGEDSVFL--- 318 (445)
T ss_pred -CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE------cCCceEEEEeecCCCcccc---
Confidence 999998888 99999996553333333334445799999999999988742 2223444333222111100
Q ss_pred cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC-
Q 005315 398 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP- 476 (702)
Q Consensus 398 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~- 476 (702)
.+.+..-+ +-+-++.+-........+ .+.+.+++|.|.|.++|+....++
T Consensus 319 ----------~~~~~k~~----------------lliaDL~e~ti~ag~~l~---cgeaq~lawDpsGeyLav~fKg~~~ 369 (445)
T KOG2139|consen 319 ----------RPQSIKRV----------------LLIADLQEVTICAGQRLC---CGEAQCLAWDPSGEYLAVIFKGQSF 369 (445)
T ss_pred ----------Ccccceee----------------eeeccchhhhhhcCcccc---cCccceeeECCCCCEEEEEEcCCch
Confidence 01110000 112222211110000112 578899999999999999877543
Q ss_pred ----CCeEEEEEeecccCcCceEEE--EEcCCCceeEEEEcc---CCCEEEEEeccCCCceEEEEECC
Q 005315 477 ----RPDISFYSMRTAQHAGRVSKL--TTLKGKQANALFWSP---SGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 477 ----~~~v~i~d~~~~~~~~~~~~~--~~~~~~~v~~~~~sp---dg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
+..|.+||.+.... +... ....+..-..++|+| +|++|.++=. .|.+.-|++.
T Consensus 370 v~~~k~~i~~fdtr~sp~---vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs---TGriq~ypl~ 431 (445)
T KOG2139|consen 370 VLLCKLHISRFDTRKSPP---VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWS---TGRIQRYPLT 431 (445)
T ss_pred hhhhhhhhhhhcccccCc---eEEEecccccCCCCceEEeeecccCCcEEEEEec---cCceEeeeeE
Confidence 22455666543210 1111 111222334566665 4555555544 5666666554
No 155
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=9.1e-15 Score=155.07 Aligned_cols=244 Identities=14% Similarity=0.241 Sum_probs=156.6
Q ss_pred eEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccC
Q 005315 331 MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 410 (702)
Q Consensus 331 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 410 (702)
.|.++|........ .......+...+|||||+.|++... ..+...++++++...+...... +......+.|+||
T Consensus 180 ~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~----~~g~~~i~i~dl~~G~~~~l~~-~~~~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTF----ESGRSALVIQTLANGAVRQVAS-FPRHNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEe----cCCCcEEEEEECCCCCeEEccC-CCCCcCCeEECCC
Confidence 68888877543321 1123345889999999999998532 2334578888876654322111 2223345789999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccC
Q 005315 411 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 490 (702)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 490 (702)
|+.|++...... ...||.++..+... ..+..+...+..+.|+|+|+.|++++..+....|+++++.++.
T Consensus 254 G~~La~~~~~~g--------~~~I~~~d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~- 322 (429)
T PRK03629 254 GSKLAFALSKTG--------SLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA- 322 (429)
T ss_pred CCEEEEEEcCCC--------CcEEEEEECCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-
Confidence 999998654311 12344444333322 2343445567889999999999998875433355555654432
Q ss_pred cCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccc
Q 005315 491 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEM 570 (702)
Q Consensus 491 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~ 570 (702)
...+ +..+.....+.|||||++|++.+.......|.+||+.+++..............|+|||++|++++.
T Consensus 323 ---~~~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~----- 393 (429)
T PRK03629 323 ---PQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSS----- 393 (429)
T ss_pred ---eEEe-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEc-----
Confidence 1222 2233445679999999999887653224568899998776543322233457899999999999998
Q ss_pred cc---cEEEEEeccceeeee--ccccEeeEEEeeC
Q 005315 571 EN---GFNIWSFNGKLLYRT--LKDHFFQFLWRPR 600 (702)
Q Consensus 571 d~---~v~iw~~~g~~l~~~--~~~~i~~~~w~p~ 600 (702)
++ .+.+++++|...... +.+.+...+|+|.
T Consensus 394 ~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 394 QGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 44 377788888766655 4467888999984
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2e-16 Score=170.75 Aligned_cols=241 Identities=19% Similarity=0.353 Sum_probs=173.2
Q ss_pred cceEEEcCCCCcE----EEEec-CCeEEEEecCCc------ccccceeeccCCeeEEEeCCCCC-eEEEEeecCCCCCCC
Q 005315 311 WPVFRWGGGKDKY----FAKLG-KNMISVYETESF------TLIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQP 378 (702)
Q Consensus 311 w~~~~~s~~dg~~----la~~~-d~~i~v~d~~~~------~~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~ 378 (702)
|..+.|++ .|.. ||.+. ||.|.+|+.... .++..+..|.+.|..+.|++... .||. ++..
T Consensus 67 F~kL~W~~-~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLAS-------Ga~~ 138 (1049)
T KOG0307|consen 67 FNKLAWGS-YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLAS-------GADD 138 (1049)
T ss_pred ceeeeecc-cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeec-------cCCC
Confidence 44789988 7665 77776 999999997752 24556667888999999999865 7877 4555
Q ss_pred cEEEEEecCCcc-eeeeeee-cccccceeEEccCCCEE-EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc
Q 005315 379 ARVSLVQIPSKE-ELRQKNL-FSVSDCKMYWQSSGDYL-AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK 455 (702)
Q Consensus 379 ~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~s~~g~~l-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~ 455 (702)
+.|++||+...+ +...... ....+..+.|+..-.++ +.++.++. ..+|+++.+. ++-.+........
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~---------~~iWDlr~~~-pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR---------AVIWDLRKKK-PIIKLSDTPGRMH 208 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC---------ceeccccCCC-cccccccCCCccc
Confidence 567777765533 2221122 33445567899766654 44444434 6899999763 3222222122345
Q ss_pred eeEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCC-CEEEEEeccCCCceEEE
Q 005315 456 IIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG-RFIVLAGLKGFNGQLEF 531 (702)
Q Consensus 456 v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg-~~l~~~~~~~~dg~v~i 531 (702)
+..++|+|++ ..++++++|...+.|.+||++.... +++.+.+| .|.++.|++.+ ++|++++. |+.+.+
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~lllSsgk---D~~ii~ 280 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLLLSSGK---DNRIIC 280 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhhhcccC---CCCeeE
Confidence 7789999965 6788888887777999999975443 55555544 68999999987 78888887 999999
Q ss_pred EECCCcceeeeccc--CceeeeEECCCCC-EEEEEEeecccccccEEEEEeccc
Q 005315 532 YNVDELETMATAEH--FMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 532 ~d~~~~~~~~~~~~--~~i~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
|+.++++++..... ..+..+.|+|..- .++.++- ||.|.||++.|.
T Consensus 281 wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asf-----dgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 281 WNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASF-----DGKISIYSLQGT 329 (1049)
T ss_pred ecCCCceEeeecCCCCcceeeeeecCCCcchhhhhee-----ccceeeeeeecC
Confidence 99999999987444 7789999999877 5666666 999999998754
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.72 E-value=8.1e-16 Score=150.78 Aligned_cols=282 Identities=12% Similarity=0.230 Sum_probs=188.7
Q ss_pred EEEEEeCCceEEeecCcCcceeeee----cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-----E
Q 005315 217 YLATVHRQGAAVWGGANTFNRLMRY----AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-----V 287 (702)
Q Consensus 217 ~lat~~~~~i~iw~~~~~~~~~~~~----~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~-----~ 287 (702)
+++..+.+.++|||.. .....-.+ ..+++.++.|+.... |++++.. +...+++|. ..|+ .
T Consensus 5 l~~aS~gd~~kl~D~s-~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~--------gdk~~~~~~-K~g~~~~Vp~ 73 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFS-DLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMA--------GDKVMRIKE-KDGKTPEVPR 73 (673)
T ss_pred eeeeccCCceEEeecc-cccCccccccCCCCCcceeeeccccce-EEEeecC--------CceeEEEec-ccCCCCccce
Confidence 5566667789999987 55544444 234699999998764 5544433 116788997 4554 1
Q ss_pred EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEE
Q 005315 288 MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIIS 366 (702)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la 366 (702)
++...+. ... |+.... -..|+++++ .+.|+|||+....+......|...|.++.++-.+.+||
T Consensus 74 ~~k~~gd-~~~--------------Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiA 137 (673)
T KOG4378|consen 74 VRKLTGD-NAF--------------CVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIA 137 (673)
T ss_pred eeccccc-hHH--------------HHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeE
Confidence 2222222 111 333333 446999999 99999999996655555666778899999999999999
Q ss_pred EEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005315 367 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 446 (702)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 446 (702)
. ++.++.+.| ....++... ..
T Consensus 138 s-----vs~gGdiii--h~~~t~~~t----------------------------------------------------t~ 158 (673)
T KOG4378|consen 138 S-----VSDGGDIII--HGTKTKQKT----------------------------------------------------TT 158 (673)
T ss_pred E-----eccCCcEEE--EecccCccc----------------------------------------------------cc
Confidence 8 444443332 111111000 00
Q ss_pred EEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc---CCCceeEEEEccCCC-EEEEEec
Q 005315 447 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL---KGKQANALFWSPSGR-FIVLAGL 522 (702)
Q Consensus 447 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~spdg~-~l~~~~~ 522 (702)
+.. +....|.-+.+||..+.+++..+|.+ .|.+||+.... ++... +..+...++|||... .|++.+.
T Consensus 159 f~~-~sgqsvRll~ys~skr~lL~~asd~G--~VtlwDv~g~s------p~~~~~~~HsAP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 159 FTI-DSGQSVRLLRYSPSKRFLLSIASDKG--AVTLWDVQGMS------PIFHASEAHSAPCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred eec-CCCCeEEEeecccccceeeEeeccCC--eEEEEeccCCC------cccchhhhccCCcCcceecCCccceEEEecc
Confidence 111 11334556888998777666655432 99999996544 33332 234788899999765 5566777
Q ss_pred cCCCceEEEEECCCcceeee-cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccce----eeeeccccEeeEEE
Q 005315 523 KGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL----LYRTLKDHFFQFLW 597 (702)
Q Consensus 523 ~~~dg~v~i~d~~~~~~~~~-~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~----l~~~~~~~i~~~~w 597 (702)
|..|.+||....+.... .-..+.+.++|+++|.+|+.|+. .|.+..||+.+.. +...|...|++++|
T Consensus 230 ---Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s-----~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 230 ---DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS-----KGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ---cceEEEeecccccccceeeecCCcceeeecCCceEEEeecC-----CceEEEEecccCCCCceEeeecccceeEEEe
Confidence 99999999996655544 33467889999999999999999 8999999998642 23446788999999
Q ss_pred eeCC
Q 005315 598 RPRP 601 (702)
Q Consensus 598 ~p~~ 601 (702)
.|.+
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 9986
No 158
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.3e-15 Score=139.74 Aligned_cols=273 Identities=15% Similarity=0.136 Sum_probs=184.6
Q ss_pred ccccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCccee
Q 005315 160 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL 238 (702)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~ 238 (702)
+-+.+.-++|... .+++++=++..++++.+. . .....-.|..++.+++|-++ ..+++|+-+| |+++|+. +....
T Consensus 14 d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~-~-~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln-~~~~~ 88 (323)
T KOG1036|consen 14 DGISSVKFSPSSS-DLLVSSWDGSLRLYDVPA-N-SLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLN-TGNED 88 (323)
T ss_pred hceeeEEEcCcCC-cEEEEeccCcEEEEeccc-h-hhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEec-CCcce
Confidence 3445555664444 456666788888888842 2 33334467889999999984 5678888888 9999999 55544
Q ss_pred eeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEc
Q 005315 239 MRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 317 (702)
Q Consensus 239 ~~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s 317 (702)
....|. +|.||..++-...+++|+.| ++|++||.+.....-.+..... ..+.+
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD----------~~ik~wD~R~~~~~~~~d~~kk----------------Vy~~~ 142 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWD----------KTIKFWDPRNKVVVGTFDQGKK----------------VYCMD 142 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccC----------ccEEEEeccccccccccccCce----------------EEEEe
Confidence 444444 69999999999999999999 9999999876444444444432 23445
Q ss_pred CCCCcEEEEec-CCeEEEEecCCcccccc---eeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 318 GGKDKYFAKLG-KNMISVYETESFTLIDK---KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 318 ~~dg~~la~~~-d~~i~v~d~~~~~~~~~---~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
- .|..|+.+. +..+.+||++++..... ..++. .++++++-|++.-.++ ++-++.+.+-.++.. ....
T Consensus 143 v-~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lky-qtR~v~~~pn~eGy~~-----sSieGRVavE~~d~s--~~~~ 213 (323)
T KOG1036|consen 143 V-SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKY-QTRCVALVPNGEGYVV-----SSIEGRVAVEYFDDS--EEAQ 213 (323)
T ss_pred c-cCCEEEEeecCceEEEEEcccccchhhhcccccee-EEEEEEEecCCCceEE-----EeecceEEEEccCCc--hHHh
Confidence 5 666676655 99999999997764321 11222 3789999997666665 555665555444432 1110
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 473 (702)
.+..++ +.++...++.. + -.+|++++|+|-...||+++.
T Consensus 214 -----------------skkyaF----------------kCHr~~~~~~~-----~---~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 214 -----------------SKKYAF----------------KCHRLSEKDTE-----I---IYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred -----------------hhceeE----------------EeeecccCCce-----E---EEEeceeEeccccceEEecCC
Confidence 111111 22222222221 1 468999999999999999999
Q ss_pred CCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEec
Q 005315 474 DSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 474 d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~ 522 (702)
|| .|.+||+...+ .+..+. ...|.+++|+-+|..||+++.
T Consensus 253 DG---~V~~Wd~~~rK------rl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 253 DG---IVNIWDLFNRK------RLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred Cc---eEEEccCcchh------hhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99 99999996544 344444 346899999999999999875
No 159
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.8e-17 Score=169.57 Aligned_cols=238 Identities=12% Similarity=0.292 Sum_probs=188.6
Q ss_pred eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCC
Q 005315 226 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 305 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~ 305 (702)
+++|+.. .. ..|...|.++..-..++.+++|+.+ ..+.+|.+..-..+..|.+|...+.
T Consensus 16 Lr~~~~~-~~----~~hsaav~~lk~~~s~r~~~~Gg~~----------~k~~L~~i~kp~~i~S~~~hespIe------ 74 (825)
T KOG0267|consen 16 LRVWDTR-EF----VAHSAAVGCLKIRKSSRSLVTGGED----------EKVNLWAIGKPNAITSLTGHESPIE------ 74 (825)
T ss_pred cccccch-hh----hhhhhhhceeeeeccceeeccCCCc----------eeeccccccCCchhheeeccCCcce------
Confidence 5677765 21 1123347777776778899999999 7888999877777778889887764
Q ss_pred CCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEE
Q 005315 306 VAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV 384 (702)
Q Consensus 306 ~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 384 (702)
++.|++ +..+|+.+. +|+|++||+...+.++.+..|..++..+.|+|-+.+.|. ++.+...
T Consensus 75 -------Sl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~-----gStdtd~----- 136 (825)
T KOG0267|consen 75 -------SLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFAS-----GSTDTDL----- 136 (825)
T ss_pred -------eeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecc-----ccccccc-----
Confidence 899999 999999998 999999999999988888888888889999998888776 4444433
Q ss_pred ecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC
Q 005315 385 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 464 (702)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 464 (702)
.+|+++..++. ....+|...+..+.|+|+
T Consensus 137 ------------------------------------------------~iwD~Rk~Gc~---~~~~s~~~vv~~l~lsP~ 165 (825)
T KOG0267|consen 137 ------------------------------------------------KIWDIRKKGCS---HTYKSHTRVVDVLRLSPD 165 (825)
T ss_pred ------------------------------------------------eehhhhccCce---eeecCCcceeEEEeecCC
Confidence 34444433321 234467888999999999
Q ss_pred CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee
Q 005315 465 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 542 (702)
Q Consensus 465 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~ 542 (702)
|++++.++.|. .++|||+..++ .+..+..| .+..+.|+|..-.++.|+. |++++|||+++.+++.+
T Consensus 166 Gr~v~~g~ed~---tvki~d~~agk------~~~ef~~~e~~v~sle~hp~e~Lla~Gs~---d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 166 GRWVASGGEDN---TVKIWDLTAGK------LSKEFKSHEGKVQSLEFHPLEVLLAPGSS---DRTVRFWDLETFEVISS 233 (825)
T ss_pred CceeeccCCcc---eeeeecccccc------cccccccccccccccccCchhhhhccCCC---CceeeeeccceeEEeec
Confidence 99999999988 99999997665 56667644 6788889999888888888 99999999999999876
Q ss_pred cc--cCceeeeEECCCCCEEEEEEe
Q 005315 543 AE--HFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 543 ~~--~~~i~~~~~spdg~~l~t~s~ 565 (702)
.. ...|.+..|+|+|+.+++|..
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cCCccCCceeeeecCCceeeecCch
Confidence 43 478999999999999988876
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=8e-16 Score=143.23 Aligned_cols=278 Identities=15% Similarity=0.236 Sum_probs=178.0
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEe------eccCCCcccccCCCCCCCCcccceEEEc--
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR------DFKGSADEFAVGGTGGVAGVSWPVFRWG-- 317 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~w~~~~~s-- 317 (702)
...+.|||||.-|++-+.+ ..+.+|++...-.-. -+..+. .+.+.....+. ..+|-
T Consensus 52 ~kgckWSPDGSciL~~sed----------n~l~~~nlP~dlys~~~~~~~~~~~~~-~~r~~eg~tvy-----dy~wYs~ 115 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSED----------NCLNCWNLPFDLYSKKADGPLNFSKHL-SYRYQEGETVY-----DYCWYSR 115 (406)
T ss_pred hccceeCCCCceEEeeccc----------CeeeEEecChhhcccCCCCccccccce-eEEeccCCEEE-----EEEeeec
Confidence 5678999999999999999 899999984211000 000000 00000011111 23342
Q ss_pred -----CCCCcEEEEec-CCeEEEEecCCcccccceee--c---cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEec
Q 005315 318 -----GGKDKYFAKLG-KNMISVYETESFTLIDKKSL--K---VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 386 (702)
Q Consensus 318 -----~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~--~---~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 386 (702)
| +..++|+.+ +.-|++||.-+|++-..... | .....+++|+|||..|.. +-...++|+...-
T Consensus 116 M~s~qP-~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa------GykrcirvFdt~R 188 (406)
T KOG2919|consen 116 MKSDQP-STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA------GYKRCIRVFDTSR 188 (406)
T ss_pred cccCCC-ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee------cccceEEEeeccC
Confidence 5 667888888 99999999999987665433 2 234678899999988874 3444444433221
Q ss_pred CCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CC
Q 005315 387 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KG 465 (702)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g 465 (702)
|-+..- ++..-.++ + .+..+-+.+++++| +.
T Consensus 189 pGr~c~-----------------------------------------vy~t~~~~------k-~gq~giisc~a~sP~~~ 220 (406)
T KOG2919|consen 189 PGRDCP-----------------------------------------VYTTVTKG------K-FGQKGIISCFAFSPMDS 220 (406)
T ss_pred CCCCCc-----------------------------------------chhhhhcc------c-ccccceeeeeeccCCCC
Confidence 111100 00000000 0 02256788899999 45
Q ss_pred cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce-eee
Q 005315 466 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-MAT 542 (702)
Q Consensus 466 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~-~~~ 542 (702)
+.+++++-.. .+-||.-..+. ++..+.++ .|+.+.|.++|..|++++.. +-.|..||++..+. +..
T Consensus 221 ~~~a~gsY~q---~~giy~~~~~~------pl~llggh~gGvThL~~~edGn~lfsGaRk--~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 221 KTLAVGSYGQ---RVGIYNDDGRR------PLQLLGGHGGGVTHLQWCEDGNKLFSGARK--DDKILCWDIRYSRDPVYA 289 (406)
T ss_pred cceeeecccc---eeeeEecCCCC------ceeeecccCCCeeeEEeccCcCeecccccC--CCeEEEEeehhccchhhh
Confidence 5777777655 67777764433 56666544 69999999999999998752 67899999985332 221
Q ss_pred --cccC---ceeeeEECCCCCEEEEEEeecccccccEEEEEecc--ce--eeeeccccEeeEEEeeCCCCCCChhhH
Q 005315 543 --AEHF---MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG--KL--LYRTLKDHFFQFLWRPRPPSFLTPEKE 610 (702)
Q Consensus 543 --~~~~---~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g--~~--l~~~~~~~i~~~~w~p~~~~l~s~~~d 610 (702)
.|.. .=.-+...|+|++|++|+. ||.|++||+++ .. ....+.+.+..++++|--+.+++++..
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~t-----dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDT-----DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCC-----CccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 1111 1124567899999999999 99999999984 42 334466889999999998888887754
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=3.3e-15 Score=139.61 Aligned_cols=286 Identities=14% Similarity=0.164 Sum_probs=178.4
Q ss_pred CCceEEEEeCCceEEEecCCCCC--CCcccc--cCCCcccceEEECCC----CcEEEEEeCCc-eEEeecCcCcceeeee
Q 005315 171 ARDQFVIRSGTDTEVLWNDARHL--KPEPVY--KRSYWTESFVQWSPL----GTYLATVHRQG-AAVWGGANTFNRLMRY 241 (702)
Q Consensus 171 ~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~--~~~~~~v~~v~~Spd----g~~lat~~~~~-i~iw~~~~~~~~~~~~ 241 (702)
+..|.+++.|.....++..+..+ .....+ ..|...-.-++|+-| .-+||.++.-| |+|.|.. +.+....+
T Consensus 53 ~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~-~~~~~~~~ 131 (385)
T KOG1034|consen 53 DEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV-SGQCSKNY 131 (385)
T ss_pred CCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc-hhhhccce
Confidence 34466666666666677764444 222222 224455567788754 34788888888 6799999 77776666
Q ss_pred -cCC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeecc---CCCcccccCCCCCCCCcccceEE
Q 005315 242 -AHP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK---GSADEFAVGGTGGVAGVSWPVFR 315 (702)
Q Consensus 242 -~~~-~v~~i~fSpdg-~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~ 315 (702)
.|. .|+.|.|.|+. ++|+++|.| ..|++|+++++.++..|- +|.+.+. ++.
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~VfGG~egHrdeVL-------------SvD 188 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVFGGVEGHRDEVL-------------SVD 188 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEecccccccCcEE-------------EEE
Confidence 455 49999999986 789999999 999999999999988775 4555553 789
Q ss_pred EcCCCCcEEEEec-CCeEEEEecCCccccccee------------------ecc----------CCeeEEEeCCCCCeEE
Q 005315 316 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKS------------------LKV----------ENVMDFSWSPTDPIIS 366 (702)
Q Consensus 316 ~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~------------------~~~----------~~v~~~~~sp~~~~la 366 (702)
|++ +|.+|++++ |.+|.+|+++..+...... .+. ..|.++.|- |.+++
T Consensus 189 ~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~il 265 (385)
T KOG1034|consen 189 FSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFIL 265 (385)
T ss_pred EcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhee
Confidence 999 999999999 9999999998443221110 000 111111111 33343
Q ss_pred EEeecCCCCCCCcEEEEEecCCcc-eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCccee
Q 005315 367 LFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIE 445 (702)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 445 (702)
+ -+.++ .|..|.....+ .+.... -|.+.. ..+-.
T Consensus 266 S-----kscen--aI~~w~pgkl~e~~~~vk-----------p~es~~------------------Ti~~~--------- 300 (385)
T KOG1034|consen 266 S-----KSCEN--AIVCWKPGKLEESIHNVK-----------PPESAT------------------TILGE--------- 300 (385)
T ss_pred e-----cccCc--eEEEEecchhhhhhhccC-----------CCccce------------------eeeeE---------
Confidence 3 12222 23223221100 000000 000000 00000
Q ss_pred EEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCC
Q 005315 446 VLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGF 525 (702)
Q Consensus 446 ~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~ 525 (702)
+.++...-...-+++.|-++.||.+...| .|.+||++...............+..|...+||-||.+|+..+.
T Consensus 301 -~~~~~c~iWfirf~~d~~~~~la~gnq~g---~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd--- 373 (385)
T KOG1034|consen 301 -FDYPMCDIWFIRFAFDPWQKMLALGNQSG---KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD--- 373 (385)
T ss_pred -eccCccceEEEEEeecHHHHHHhhccCCC---cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC---
Confidence 11111112233467888899999998888 99999997654332233444555668999999999999999988
Q ss_pred CceEEEEECC
Q 005315 526 NGQLEFYNVD 535 (702)
Q Consensus 526 dg~v~i~d~~ 535 (702)
++.|.-||.-
T Consensus 374 d~~Vwrwdrv 383 (385)
T KOG1034|consen 374 DGTVWRWDRV 383 (385)
T ss_pred CCcEEEEEee
Confidence 9999999853
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.71 E-value=2.9e-15 Score=145.89 Aligned_cols=290 Identities=11% Similarity=0.168 Sum_probs=198.0
Q ss_pred eecCCCeeEEEecCCCC--EEEEEcCCCCCCCcCCCccEEEEEEccCCc----EEeeccCCCcccccCCCCCCCCcccce
Q 005315 240 RYAHPQVKLIDFSPGEK--YLVTYSSHEPSNPRDANRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWPV 313 (702)
Q Consensus 240 ~~~~~~v~~i~fSpdg~--~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~w~~ 313 (702)
+.....|.+++|+|... .+|+|... |+|-+||+.+.+ .+..|..|..+++ +
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~----------G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs-------------~ 239 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKG----------GQVGLWNFGTQEKDKDGVYLFTPHSGPVS-------------G 239 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCC----------CcEEEEecCCCCCccCceEEeccCCcccc-------------c
Confidence 33445699999999875 66777777 999999995332 3556777766664 7
Q ss_pred EEEcCCCCcEEEEec-CCeEEEEecCCcccccceee--ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 314 FRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 314 ~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
+.|+|.+...+.+.+ ||+|++-|+.+...-..... ....+.++.++.....+++ ++.-+.+.+++.....
T Consensus 240 l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~-------~~~~G~f~~iD~R~~~ 312 (498)
T KOG4328|consen 240 LKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF-------GDNVGNFNVIDLRTDG 312 (498)
T ss_pred eEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEE-------eecccceEEEEeecCC
Confidence 899995334555555 99999999986543222222 2223677788887777766 3444445555554332
Q ss_pred -eeeeeeecccccceeEEccCCC-EEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCCceeEEEEeeCCcE
Q 005315 391 -ELRQKNLFSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEPKGHR 467 (702)
Q Consensus 391 -~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp~g~~ 467 (702)
......++...++.++++|... +|++++.+++ .+||+++.-.... ..+....|...|.+..|||.|-.
T Consensus 313 s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T---------~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt 383 (498)
T KOG4328|consen 313 SEYENLRLHKKKITSVALNPVCPWFLATASLDQT---------AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT 383 (498)
T ss_pred ccchhhhhhhcccceeecCCCCchheeecccCcc---------eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc
Confidence 2333334444666778898665 6777888887 7899998643322 24666689999999999998878
Q ss_pred EEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-----CC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCccee
Q 005315 468 FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-----GK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 540 (702)
Q Consensus 468 l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~ 540 (702)
|++.+.|. .|+|||..--. ....+..++. +. ......|.|+-.+++++.. -..|.|||-..++.+
T Consensus 384 l~TT~~D~---~IRv~dss~~s--a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~---~r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 384 LLTTCQDN---EIRVFDSSCIS--AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY---PRPIDVFDGNGGQMV 455 (498)
T ss_pred eEeeccCC---ceEEeeccccc--ccCCccceeeccCcccccccchhheeCCCccEEEEecc---CcceeEEcCCCCEEe
Confidence 99999988 99999984100 1111222222 11 2355789999999999988 778999999988877
Q ss_pred eecccCc---ee-eeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 541 ATAEHFM---AT-DVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 541 ~~~~~~~---i~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
...|... |. -..|+|-+..+++|+.+ .|.++||.-.
T Consensus 456 ~el~~P~~~tI~~vn~~HP~~~~~~aG~~s----~Gki~vft~k 495 (498)
T KOG4328|consen 456 CELHDPESSTIPSVNEFHPMRDTLAAGGNS----SGKIYVFTNK 495 (498)
T ss_pred eeccCccccccccceeecccccceeccCCc----cceEEEEecC
Confidence 7755533 33 36899998877777764 6778887644
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=3.7e-15 Score=150.13 Aligned_cols=156 Identities=23% Similarity=0.380 Sum_probs=117.2
Q ss_pred ccceeEEcc-CCCEEEEEEcccccccccccccEEEEEEecCCcceeE----EEecCCCCceeEEEEee-CCcEEEEEEcC
Q 005315 401 SDCKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV----LELDNKNDKIIAFAWEP-KGHRFAVIHGD 474 (702)
Q Consensus 401 ~~~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~l~~h~~~v~~~~~sp-~g~~l~~~~~d 474 (702)
....++|.| |...|+++++++. +.||++...+.+... ..++.|...|+++.|+| -.+.|++++.|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~---------i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQ---------INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeeecccCCCChHHeeecccCce---------EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 445678998 6679999999887 899999877654322 34678999999999999 56788888888
Q ss_pred CCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-cc---cCce
Q 005315 475 SPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AE---HFMA 548 (702)
Q Consensus 475 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~---~~~i 548 (702)
. +|++||+.++.. ...+.+| +|..++|||+|+.+++.+. ||+|++|...+++.-.. +. ...-
T Consensus 700 ~---Ti~lWDl~~~~~------~~~l~gHtdqIf~~AWSpdGr~~AtVcK---Dg~~rVy~Prs~e~pv~Eg~gpvgtRg 767 (1012)
T KOG1445|consen 700 S---TIELWDLANAKL------YSRLVGHTDQIFGIAWSPDGRRIATVCK---DGTLRVYEPRSREQPVYEGKGPVGTRG 767 (1012)
T ss_pred c---eeeeeehhhhhh------hheeccCcCceeEEEECCCCcceeeeec---CceEEEeCCCCCCCccccCCCCccCcc
Confidence 8 999999987652 2334444 7999999999999999999 99999999886554322 21 1233
Q ss_pred eeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 549 TDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 549 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
..+.|.-||++|++.+.+ .+....+.+|+
T Consensus 768 ARi~wacdgr~viv~Gfd-k~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFD-KSSERQVQMYD 796 (1012)
T ss_pred eeEEEEecCcEEEEeccc-ccchhhhhhhh
Confidence 468999999998887653 01134455554
No 164
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.71 E-value=1.1e-14 Score=144.01 Aligned_cols=364 Identities=16% Similarity=0.272 Sum_probs=239.3
Q ss_pred ccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCC----------------ceE
Q 005315 164 KWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----------------GAA 227 (702)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----------------~i~ 227 (702)
.....|.|+..+ ......+.+|..+... ....+ . ...|..+.|||.|+||.+-+.. .+.
T Consensus 37 ~~~~SP~G~~l~--~~~~~~V~~~~g~~~~-~l~~~-~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 37 YVSESPLGTYLF--SEHAAGVECWGGPSKA-KLVRF-R-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred heeecCcchhee--hhhccceEEccccchh-heeee-e-cCCceecccCcccceeeeeccCCccChhhccCCccccCcee
Confidence 345567777544 3344455688885433 22222 2 2468999999999999996632 356
Q ss_pred EeecCcCcceeeeecCC-----CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCC
Q 005315 228 VWGGANTFNRLMRYAHP-----QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGG 302 (702)
Q Consensus 228 iw~~~~~~~~~~~~~~~-----~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~ 302 (702)
+||+. ++..+..|... +-.-+.||-+.+|+|-...+ .+.|+++ ++... ....+.-.
T Consensus 112 vwd~~-sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~-----------sl~i~e~-t~n~~-~~p~~~lr----- 172 (561)
T COG5354 112 VWDIA-SGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS-----------SLYIHEI-TDNIE-EHPFKNLR----- 172 (561)
T ss_pred EEecc-CceeEeeccccCCcccccceeeeeecchhhhhhccC-----------eEEEEec-CCccc-cCchhhcc-----
Confidence 99999 88888888533 23478999999999877655 6899997 44422 11111100
Q ss_pred CCCCCCcccceEEEcCC-CCcEEEEec------CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCC
Q 005315 303 TGGVAGVSWPVFRWGGG-KDKYFAKLG------KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG 375 (702)
Q Consensus 303 ~~~~~~~~w~~~~~s~~-dg~~la~~~------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~ 375 (702)
+.|+. .+.|||. ++.-||+.. ++.+.||.++.++.+..+.+....-..+.|.+.|++|++.+-.....
T Consensus 173 ---~~gi~--dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 173 ---PVGIL--DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred ---cccee--eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 12221 6889983 334566654 57899999998777766655444445789999999988765432111
Q ss_pred C----CCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC
Q 005315 376 N----QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN 451 (702)
Q Consensus 376 ~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 451 (702)
+ +...++++++..+..-..+ ........+.|+|.++.+++.+.-... .+.+|+++.+ +....
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa-------~~s~~~lr~N------l~~~~ 313 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPA-------SVSVFDLRGN------LRFYF 313 (561)
T ss_pred ccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEeccccc-------ceeecccccc------eEEec
Confidence 1 2245777777643322221 234455678999999998887643321 1445555532 11112
Q ss_pred CCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccC---CCce
Q 005315 452 KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKG---FNGQ 528 (702)
Q Consensus 452 h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~---~dg~ 528 (702)
....=+.+.|||.++++++++-+.....+.+|+... +...+..+.+....-+.|||||+++.++..+. .|..
T Consensus 314 Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~-----rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~ 388 (561)
T COG5354 314 PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG-----RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS 388 (561)
T ss_pred CCcccccccccCcccEEEEecCCccccceEEeccCC-----ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcc
Confidence 244556688999999999987765445899999743 34466667676777789999999998876432 5888
Q ss_pred EEEEECCCcceeeecccCceeeeEECCCCCEEEEEEee-cccccccEEEEEecc
Q 005315 529 LEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTS-VHEMENGFNIWSFNG 581 (702)
Q Consensus 529 v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~-~~~~d~~v~iw~~~g 581 (702)
+.||++...... ..+.+.|.|.|++..+.+.. .|...++.++.++.|
T Consensus 389 i~l~~v~g~~~f------el~~~~W~p~~~~~ttsSs~~~h~~~~~~~~~k~~G 436 (561)
T COG5354 389 IKLWDVYGAKVF------ELTNITWDPSGQYVTTSSSCPKHKVEHGYKIFKIAG 436 (561)
T ss_pred eEEEEecCchhh------hhhhccccCCcccceeeccCCCCccccccccccccc
Confidence 999998844332 67789999999998888776 555566677776654
No 165
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.4e-15 Score=137.57 Aligned_cols=256 Identities=16% Similarity=0.353 Sum_probs=175.0
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----cEEeeccCCCcccccCCCCCCCCcccceEEEc
Q 005315 243 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 317 (702)
Q Consensus 243 ~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s 317 (702)
|.+ |.++.|.+-|+.+|||+.| ++|+|||..+. .+....+.|.+.+ | .+.|.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsD----------q~vkI~d~~~~s~~W~~Ts~Wrah~~Si------------~-rV~WA 68 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSD----------QTVKIWDSTSDSGTWSCTSSWRAHDGSI------------W-RVVWA 68 (361)
T ss_pred CcceeeeeeecccCceeeeccCC----------CcEEEEeccCCCCceEEeeeEEecCCcE------------E-EEEec
Confidence 344 9999999999999999999 99999996433 3556677777766 5 47776
Q ss_pred CC-CCcEEEEec-CCeEEEEecCCcc-------cccceee--ccCCeeEEEeCCC--CCeEEEEeecCCCCCCCcEEEEE
Q 005315 318 GG-KDKYFAKLG-KNMISVYETESFT-------LIDKKSL--KVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLV 384 (702)
Q Consensus 318 ~~-dg~~la~~~-d~~i~v~d~~~~~-------~~~~~~~--~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~ 384 (702)
+. =|+.+|+++ |+++.||+-.... -+....+ ....|.++.|+|. |-.||. ++.++.+|| |
T Consensus 69 hPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-----~~aDG~lRI--Y 141 (361)
T KOG2445|consen 69 HPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-----ASADGILRI--Y 141 (361)
T ss_pred CccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-----eccCcEEEE--E
Confidence 52 488999999 9999999863111 1111111 2345999999997 566777 566666554 5
Q ss_pred ecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC
Q 005315 385 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 464 (702)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 464 (702)
+.+..-.+...++ +... .+ + ......+..+..|+.|+|.
T Consensus 142 EA~dp~nLs~W~L------------q~Ei-------------------~~--~--------~~pp~~~~~~~~CvsWn~s 180 (361)
T KOG2445|consen 142 EAPDPMNLSQWTL------------QHEI-------------------QN--V--------IDPPGKNKQPCFCVSWNPS 180 (361)
T ss_pred ecCCccccccchh------------hhhh-------------------hh--c--------cCCcccccCcceEEeeccc
Confidence 5443322222111 1000 00 0 0011134667788999973
Q ss_pred ---CcEEEEEEcCC--CCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccC-C---CEEEEEeccCCCceEEEEE
Q 005315 465 ---GHRFAVIHGDS--PRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPS-G---RFIVLAGLKGFNGQLEFYN 533 (702)
Q Consensus 465 ---g~~l~~~~~d~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spd-g---~~l~~~~~~~~dg~v~i~d 533 (702)
..+||+++.+. ..+.+.||...... .++..+.++.++ +|+.++|+|+ | ..||+++. || |+||.
T Consensus 181 r~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k---Dg-v~I~~ 254 (361)
T KOG2445|consen 181 RMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK---DG-VRIFK 254 (361)
T ss_pred cccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec---Cc-EEEEE
Confidence 46889888762 23478999875432 356677777755 7999999996 3 46888887 88 99999
Q ss_pred CCC--------------------cceee--ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 534 VDE--------------------LETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 534 ~~~--------------------~~~~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+.. .+++. ..|.+.+..+.|+-.|..|++.+. ||.|++|..+
T Consensus 255 v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd-----DG~VRLWkan 318 (361)
T KOG2445|consen 255 VKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD-----DGCVRLWKAN 318 (361)
T ss_pred EeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC-----Cceeeehhhh
Confidence 873 11222 256689999999999999999999 9999999754
No 166
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.70 E-value=1.2e-15 Score=148.75 Aligned_cols=235 Identities=13% Similarity=0.225 Sum_probs=158.5
Q ss_pred eCCceEEEecCCC---------CCCCcccccCCCcccceEEECCCC-cEEEEEeCCc-eEEeecCcCcc------eeeee
Q 005315 179 SGTDTEVLWNDAR---------HLKPEPVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFN------RLMRY 241 (702)
Q Consensus 179 ~~~~~~~~w~~~~---------~~~~~~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~------~~~~~ 241 (702)
...+-+.+|+..+ ...|...+.+|...-..++|++.- -+|++++.++ |.+||+..... ....+
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~ 223 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF 223 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe
Confidence 3344555776532 234555789999888899999864 3677777777 88999873222 11222
Q ss_pred -cCC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEcc--CCcEEeeccCCCcccccCCCCCCCCcccceEEE
Q 005315 242 -AHP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 316 (702)
Q Consensus 242 -~~~-~v~~i~fSpdg-~~l~t~s~d~~~~~~~~~~~~i~vwd~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 316 (702)
.|. .|..++|+|-. ..+++++.+ +.+.|||++ +.++.....+|...+. |++|
T Consensus 224 ~~h~~~VeDV~~h~~h~~lF~sv~dd----------~~L~iwD~R~~~~~~~~~~~ah~~~vn-------------~~~f 280 (422)
T KOG0264|consen 224 SGHEDVVEDVAWHPLHEDLFGSVGDD----------GKLMIWDTRSNTSKPSHSVKAHSAEVN-------------CVAF 280 (422)
T ss_pred ecCCcceehhhccccchhhheeecCC----------CeEEEEEcCCCCCCCcccccccCCcee-------------EEEe
Confidence 243 49999999965 567788888 999999999 4555666667766653 8999
Q ss_pred cCCCCcEEEEec-CCeEEEEecCCcc-cccceeeccCCeeEEEeCCCC-CeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 317 GGGKDKYFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 317 s~~dg~~la~~~-d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
+|.++..||+++ |++|.+||+++.+ .+.....|...|..+.|||.. ..||+ ++.|+...||.+. .-..-.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS-----Sg~D~rl~vWDls--~ig~eq 353 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS-----SGTDRRLNVWDLS--RIGEEQ 353 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe-----cccCCcEEEEecc--cccccc
Confidence 996777889999 9999999999765 344555677789999999985 45666 5566655555443 211000
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEE-EEE
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA-VIH 472 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~-~~~ 472 (702)
. + .-.+.+.|...+.-.||...|..++|+|+..+.+ +++
T Consensus 354 ~--------------~--------------------------eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 354 S--------------P--------------------------EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred C--------------h--------------------------hhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 0 0 0000111211233448899999999999877654 555
Q ss_pred cCCCCCeEEEEEee
Q 005315 473 GDSPRPDISFYSMR 486 (702)
Q Consensus 473 ~d~~~~~v~i~d~~ 486 (702)
.|+ .+.||.+.
T Consensus 394 eDN---~LqIW~~s 404 (422)
T KOG0264|consen 394 EDN---ILQIWQMA 404 (422)
T ss_pred CCc---eEEEeecc
Confidence 566 99999985
No 167
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.70 E-value=4.4e-15 Score=136.57 Aligned_cols=290 Identities=16% Similarity=0.246 Sum_probs=175.2
Q ss_pred cCCCeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEE--eeccC-CCcccccCC-CCCCCCcccceEEE
Q 005315 242 AHPQVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM--RDFKG-SADEFAVGG-TGGVAGVSWPVFRW 316 (702)
Q Consensus 242 ~~~~v~~i~fSp-dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~--~~~~~-~~~~~~~~~-~~~~~~~~w~~~~~ 316 (702)
|...|+++.+-| .|+|+++|+.| |.|.|||++..... .-+.. |...+...+ .+...++. .+.|
T Consensus 42 HgGsvNsL~id~tegrymlSGgad----------gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~is--s~~W 109 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGAD----------GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAIS--SAIW 109 (397)
T ss_pred CCCccceeeeccccceEEeecCCC----------ccEEEEEeccccchhhccceeheeeeccccCCccceeeee--eeEE
Confidence 344589999887 47999999999 99999999654310 00000 000000000 00111111 5678
Q ss_pred cCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCC---CeEEEEeecCCCCCCCcEEEEEecCCccee
Q 005315 317 GGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD---PIISLFVPELGGGNQPARVSLVQIPSKEEL 392 (702)
Q Consensus 317 s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~---~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (702)
-|.|...|.+++ |.+++|||..+.+....+.. .+.|.+-+|||-. .+||+ |..+. +
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~-----gtr~~--~------------ 169 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAA-----GTRDV--Q------------ 169 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEE-----ecCCC--c------------
Confidence 775666777777 99999999997765533321 2237777777742 23333 22222 2
Q ss_pred eeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEE-EEE
Q 005315 393 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF-AVI 471 (702)
Q Consensus 393 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l-~~~ 471 (702)
++|.++.... ....+.+|.+.|.++.|+|...++ +++
T Consensus 170 ---------------------------------------VrLCDi~SGs---~sH~LsGHr~~vlaV~Wsp~~e~vLatg 207 (397)
T KOG4283|consen 170 ---------------------------------------VRLCDIASGS---FSHTLSGHRDGVLAVEWSPSSEWVLATG 207 (397)
T ss_pred ---------------------------------------EEEEeccCCc---ceeeeccccCceEEEEeccCceeEEEec
Confidence 2333333221 124577999999999999988764 566
Q ss_pred EcCCCCCeEEEEEeecccCcCce---------EEEE--EcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCccee
Q 005315 472 HGDSPRPDISFYSMRTAQHAGRV---------SKLT--TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 540 (702)
Q Consensus 472 ~~d~~~~~v~i~d~~~~~~~~~~---------~~~~--~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~ 540 (702)
+.|+ .+++||++...+...+ ..+. .-..+.++.++|+.+|+++++.+. |..+++|+..+|+..
T Consensus 208 saDg---~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt---d~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 208 SADG---AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT---DDRIRVWNMESGRNT 281 (397)
T ss_pred CCCc---eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC---ccceEEeecccCccc
Confidence 6688 9999999864331110 0111 111235889999999999999988 999999999865432
Q ss_pred ee-----cc----cCceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeee--eccccEeeEEEeeCCCCCCChh
Q 005315 541 AT-----AE----HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR--TLKDHFFQFLWRPRPPSFLTPE 608 (702)
Q Consensus 541 ~~-----~~----~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~--~~~~~i~~~~w~p~~~~l~s~~ 608 (702)
.. .+ +..+. +. +.+...++.--. ++++.++++- |..+.. .|...+.+..++|+-....++.
T Consensus 282 l~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~-----~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 282 LREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPN-----DGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred ccccccccccccccceEE-Ee-ecccceEEEEec-----CCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence 21 11 11111 22 223333333333 6777777753 554443 3567788888888888888888
Q ss_pred hHHHHHHHHH
Q 005315 609 KEEEIAKNLK 618 (702)
Q Consensus 609 ~d~~i~~~l~ 618 (702)
.++.|--++.
T Consensus 355 ~d~ni~~w~p 364 (397)
T KOG4283|consen 355 MNGNIYMWSP 364 (397)
T ss_pred cCCccccccc
Confidence 8877764443
No 168
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.70 E-value=3.6e-15 Score=152.39 Aligned_cols=254 Identities=13% Similarity=0.181 Sum_probs=192.4
Q ss_pred EEEeC-CceEEEecCCC-CCCCcccccCCCcccce-EEECC-CCcEEEEEeCCc-eEEeecCcCcceeeee-cCC-CeeE
Q 005315 176 VIRSG-TDTEVLWNDAR-HLKPEPVYKRSYWTESF-VQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKL 248 (702)
Q Consensus 176 ~~~~~-~~~~~~w~~~~-~~~~~~~~~~~~~~v~~-v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~ 248 (702)
++..+ ++++.+|.... .--....+.+|.+-+.+ +++-+ ++-.|++|+.|. +.+|... +..++..+ +|. .|.|
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~-~~~P~~~LkgH~snVC~ 106 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS-QAEPLYTLKGHKSNVCS 106 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC-CCCchhhhhccccceee
Confidence 44444 77888998621 22233456777766665 88875 555689999998 7799999 77777776 454 5999
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec
Q 005315 249 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 328 (702)
Q Consensus 249 i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~ 328 (702)
++.-.++. |++||.| .+++||- .+++...+.+|...+ |. +..-| .+.|+..++
T Consensus 107 ls~~~~~~-~iSgSWD----------~TakvW~--~~~l~~~l~gH~asV------------WA-v~~l~-e~~~vTgsa 159 (745)
T KOG0301|consen 107 LSIGEDGT-LISGSWD----------STAKVWR--IGELVYSLQGHTASV------------WA-VASLP-ENTYVTGSA 159 (745)
T ss_pred eecCCcCc-eEecccc----------cceEEec--chhhhcccCCcchhe------------ee-eeecC-CCcEEeccC
Confidence 99888888 9999999 9999997 578888899999888 84 56666 665554444
Q ss_pred CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEc
Q 005315 329 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 408 (702)
Q Consensus 329 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 408 (702)
|.+|++|.- ++++..+..|..-|+.+++-|++.+|. ++.|+.++.| +
T Consensus 160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS------csNDg~Ir~w-------------------------~ 206 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS------CSNDGSIRLW-------------------------D 206 (745)
T ss_pred cceeeeccC--CchhhhhccchhheeeeEEecCCCeEe------ecCCceEEEE-------------------------e
Confidence 999999986 567777888999999999999887776 4466655533 3
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 409 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
-+|..| .++.+|...|.+++..+++..+++++.|+ +++||+..
T Consensus 207 ~~ge~l--------------------------------~~~~ghtn~vYsis~~~~~~~Ivs~gEDr---tlriW~~~-- 249 (745)
T KOG0301|consen 207 LDGEVL--------------------------------LEMHGHTNFVYSISMALSDGLIVSTGEDR---TLRIWKKD-- 249 (745)
T ss_pred ccCcee--------------------------------eeeeccceEEEEEEecCCCCeEEEecCCc---eEEEeecC--
Confidence 333322 33458889999999888888999999999 99999974
Q ss_pred cCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 489 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 489 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
.|...-++++..++++.+-++|..++.+ . ||.|+||..+
T Consensus 250 ----e~~q~I~lPttsiWsa~~L~NgDIvvg~-S---DG~VrVfT~~ 288 (745)
T KOG0301|consen 250 ----ECVQVITLPTTSIWSAKVLLNGDIVVGG-S---DGRVRVFTVD 288 (745)
T ss_pred ----ceEEEEecCccceEEEEEeeCCCEEEec-c---CceEEEEEec
Confidence 3556667777789999999999766544 4 9999999876
No 169
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=4.6e-14 Score=145.61 Aligned_cols=271 Identities=12% Similarity=0.161 Sum_probs=164.2
Q ss_pred EeCCceEEeecCcCc--ceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-CCcE--EeeccCC
Q 005315 221 VHRQGAAVWGGANTF--NRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-TGKV--MRDFKGS 294 (702)
Q Consensus 221 ~~~~~i~iw~~~~~~--~~~~~~~~-~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~-~g~~--~~~~~~~ 294 (702)
....+|.+|++..++ ..+..+.. .....+++||++++|++++... +.|.+|++. +|+. +......
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~---------~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE---------FRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC---------CcEEEEEECCCCceEEeeeecCC
Confidence 334449999986223 35555544 3488899999999987765421 678899986 3432 2222211
Q ss_pred CcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccce-e--eccCCeeEEEeCCCCCeEEEEe
Q 005315 295 ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKK-S--LKVENVMDFSWSPTDPIISLFV 369 (702)
Q Consensus 295 ~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~-~--~~~~~v~~~~~sp~~~~la~~~ 369 (702)
.... .+.++| ++++|+++. ++.|.+|++.+...+... . ....+...++++|+++++++.
T Consensus 80 ~~p~--------------~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~- 143 (330)
T PRK11028 80 GSPT--------------HISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVP- 143 (330)
T ss_pred CCce--------------EEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEe-
Confidence 1111 689999 999888776 899999998743222111 1 112345667788888777541
Q ss_pred ecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005315 370 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 449 (702)
Q Consensus 370 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 449 (702)
..+...|++|++.....+.... .....+
T Consensus 144 -----~~~~~~v~v~d~~~~g~l~~~~-----------------------------------------------~~~~~~ 171 (330)
T PRK11028 144 -----CLKEDRIRLFTLSDDGHLVAQE-----------------------------------------------PAEVTT 171 (330)
T ss_pred -----eCCCCEEEEEEECCCCcccccC-----------------------------------------------CCceec
Confidence 2222344444432211100000 000011
Q ss_pred cCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcC---CC-----ceeEEEEccCCCEEEEE
Q 005315 450 DNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK---GK-----QANALFWSPSGRFIVLA 520 (702)
Q Consensus 450 ~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~-----~v~~~~~spdg~~l~~~ 520 (702)
.. ......++|+|+|++++++.. ++ .|.+|++....+. ...+..+. .. ....+.++|+|++++++
T Consensus 172 ~~-g~~p~~~~~~pdg~~lyv~~~~~~---~v~v~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 172 VE-GAGPRHMVFHPNQQYAYCVNELNS---SVDVWQLKDPHGE--IECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CC-CCCCceEEECCCCCEEEEEecCCC---EEEEEEEeCCCCC--EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 01 234567899999999988876 44 8999999743221 22333322 11 12358899999999998
Q ss_pred eccCCCceEEEEECCCcc----eeeecc-cCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 521 GLKGFNGQLEFYNVDELE----TMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 521 ~~~~~dg~v~i~d~~~~~----~~~~~~-~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
.. .++.|.+|+++... .+.... ......+.++|||++|+++... ++.|.+|+++
T Consensus 246 ~~--~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~----~~~v~v~~~~ 304 (330)
T PRK11028 246 DR--TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK----SHHISVYEID 304 (330)
T ss_pred cC--CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc----CCcEEEEEEc
Confidence 53 26899999986322 222211 1345689999999999988763 7899999885
No 170
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2e-14 Score=143.93 Aligned_cols=341 Identities=15% Similarity=0.248 Sum_probs=222.9
Q ss_pred EEEEEeCCceEEeecCcCcceeeeecCC----CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeecc
Q 005315 217 YLATVHRQGAAVWGGANTFNRLMRYAHP----QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK 292 (702)
Q Consensus 217 ~lat~~~~~i~iw~~~~~~~~~~~~~~~----~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~ 292 (702)
.++.-+..++.+|.+.+.......+.+. .+...++|++|+++|.+..+ .++|++..++..+-+..
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~-----------~v~i~~~~~~~~~lt~~ 72 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQ-----------VVKVFEIATLKVVLCVE 72 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCC-----------eEEEEEccCCcEEEEec
Confidence 3555666778899988556666666542 26789999999999988776 79999998885444433
Q ss_pred CCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec------C-----CeEEEEecCCcccccceeeccCCeeEEEeCCC
Q 005315 293 GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG------K-----NMISVYETESFTLIDKKSLKVENVMDFSWSPT 361 (702)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~------d-----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~ 361 (702)
.. ... .+.||| .|.||.+.. + -.+.+|++.++............-....||+|
T Consensus 73 ~~-~~~--------------~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~d 136 (566)
T KOG2315|consen 73 LK-KTY--------------DLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSID 136 (566)
T ss_pred cc-eee--------------eeeecc-cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccc
Confidence 33 332 689999 999998653 2 34679999985444333334443468889998
Q ss_pred CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCC--CEEEEEEcccccccccccccEEEEEEec
Q 005315 362 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG--DYLAVKVDRYTKTKKSTYTGFELFRIKE 439 (702)
Q Consensus 362 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g--~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 439 (702)
..+.|. .....+..|++.+.+.... .++......+..+|.+ .++|+..... +..-..++||.+..
T Consensus 137 Esl~ar--------lv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~----kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 137 ESLAAR--------LVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEK----KGAPASVRIYKYPE 203 (566)
T ss_pred hhhhhh--------hhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCC----CCCCcEEEEecccc
Confidence 876664 2233466777666442221 2223333344556653 4666654432 23344578888773
Q ss_pred CC--cceeEEEecCCCCceeEEEEeeCCcEEEEEE-c--CC------CCCeEEEEEeecccCcCceEEEEEcCCCceeEE
Q 005315 440 RD--IPIEVLELDNKNDKIIAFAWEPKGHRFAVIH-G--DS------PRPDISFYSMRTAQHAGRVSKLTTLKGKQANAL 508 (702)
Q Consensus 440 ~~--~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~-~--d~------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 508 (702)
.+ .++....+ -...=..+.|++-|.-|++.. . |. +-.+++++++.... ..+.-...++|+++
T Consensus 204 ~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-----~~V~L~k~GPVhdv 276 (566)
T KOG2315|consen 204 EGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-----VSVPLLKEGPVHDV 276 (566)
T ss_pred ccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-----EEEecCCCCCceEE
Confidence 22 22222221 023334688999877544433 2 22 12368888775211 12333336799999
Q ss_pred EEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc-ceeeee
Q 005315 509 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT 587 (702)
Q Consensus 509 ~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~l~~~ 587 (702)
.|+|+|+-++++- |-+-..+.|||++ +..+.....++-+++-|+|.|++|+.++-+ ...|.+-|||+.. +++.+.
T Consensus 277 ~W~~s~~EF~Vvy-GfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFG--NL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 277 TWSPSGREFAVVY-GFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFG--NLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EECCCCCEEEEEE-ecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecC--CCCCceEEEeccchhhcccc
Confidence 9999998766553 4458899999999 677777777788899999999999999874 2258999999875 455555
Q ss_pred ccccEeeEEEeeCCCCCCChh
Q 005315 588 LKDHFFQFLWRPRPPSFLTPE 608 (702)
Q Consensus 588 ~~~~i~~~~w~p~~~~l~s~~ 608 (702)
....-+-+.|+|+|.+++|+.
T Consensus 353 ~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 353 KAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred ccCCceEEEEcCCCcEEEEEe
Confidence 556777899999999999875
No 171
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.69 E-value=2.9e-15 Score=151.55 Aligned_cols=297 Identities=16% Similarity=0.214 Sum_probs=185.4
Q ss_pred EEECC---CCcEEEEEeCCc-eEEeecCcCccee------eee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005315 209 VQWSP---LGTYLATVHRQG-AAVWGGANTFNRL------MRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 276 (702)
Q Consensus 209 v~~Sp---dg~~lat~~~~~-i~iw~~~~~~~~~------~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~ 276 (702)
+.|++ ....||.+..+| |.++|.. ...-. ..+ .|. .|..+.|-|....|++++.| .+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~-~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGD----------sT 123 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTK-SIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGD----------ST 123 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecch-hhhcchhhhhhcccccccceeEeeccCCCceeEEEccCC----------ce
Confidence 45554 346788888888 8899976 33211 111 244 49999999988899999999 99
Q ss_pred EEEEEccCCcEEee--ccCCCcccccCCCCCCCCcccceEEEcCCCC-cEEEEec-CCeEEEEecCCcc--cccce----
Q 005315 277 INIFDVRTGKVMRD--FKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFT--LIDKK---- 346 (702)
Q Consensus 277 i~vwd~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg-~~la~~~-d~~i~v~d~~~~~--~~~~~---- 346 (702)
+++||+.++++... +.+|...+. .++|.| ++ ..|++|+ ||.|.|||+.-.. .+...
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~Svk-------------S~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVK-------------SECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred eeeeeeccceeecceeecccccccc-------------hhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence 99999999988776 888877653 678888 55 4677777 9999999987332 11000
Q ss_pred -eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEc-ccccc
Q 005315 347 -SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD-RYTKT 424 (702)
Q Consensus 347 -~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~-~~~~~ 424 (702)
..|..+- ---+|-.+ ++..+.......... +...+..|...|++++. |+.
T Consensus 190 ~~~~n~~p--tpskp~~k----------------r~~k~kA~s~ti~ss--------vTvv~fkDe~tlaSaga~D~~-- 241 (720)
T KOG0321|consen 190 YGRHNTAP--TPSKPLKK----------------RIRKWKAASNTIFSS--------VTVVLFKDESTLASAGAADST-- 241 (720)
T ss_pred hccccCCC--CCCchhhc----------------cccccccccCceeee--------eEEEEEeccceeeeccCCCcc--
Confidence 0000000 00000000 000000000000000 00112233444444333 322
Q ss_pred cccccccEEEEEEecCCccee-----EEEecCC---CCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEE
Q 005315 425 KKSTYTGFELFRIKERDIPIE-----VLELDNK---NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSK 496 (702)
Q Consensus 425 ~~~~~~~~~l~~l~~~~~~~~-----~~~l~~h---~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~ 496 (702)
+++|+|+....+.. ...++-| ...+.++.....|.+|.+.+.|+ .|++|++.+-... +
T Consensus 242 -------iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~---sIy~ynm~s~s~s----P 307 (720)
T KOG0321|consen 242 -------IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN---SIYFYNMRSLSIS----P 307 (720)
T ss_pred -------eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC---cEEEEeccccCcC----c
Confidence 55555554322211 1112222 34567777777889988888888 9999999764433 5
Q ss_pred EEEcCCCce----eEEEEccCCCEEEEEeccCCCceEEEEECCCcce---eeecccCceeeeEECCCCC-EEEEEEeecc
Q 005315 497 LTTLKGKQA----NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDPTGR-YVATAVTSVH 568 (702)
Q Consensus 497 ~~~~~~~~v----~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~---~~~~~~~~i~~~~~spdg~-~l~t~s~~~~ 568 (702)
+..+.++.+ ..-..||++.+|++++. |...++|.+.+.+. +..+|...|++++|.|.-- -+++++.
T Consensus 308 ~~~~sg~~~~sf~vks~lSpd~~~l~SgSs---d~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSd--- 381 (720)
T KOG0321|consen 308 VAEFSGKLNSSFYVKSELSPDDCSLLSGSS---DEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSD--- 381 (720)
T ss_pred hhhccCcccceeeeeeecCCCCceEeccCC---CcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeecc---
Confidence 555555543 33457999999999998 99999999987654 3457888999999988543 5777788
Q ss_pred cccccEEEEEec
Q 005315 569 EMENGFNIWSFN 580 (702)
Q Consensus 569 ~~d~~v~iw~~~ 580 (702)
|.+++||++.
T Consensus 382 --D~~~kiW~l~ 391 (720)
T KOG0321|consen 382 --DFRVKIWRLS 391 (720)
T ss_pred --CcceEEEecc
Confidence 9999999985
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=1.9e-14 Score=142.60 Aligned_cols=198 Identities=15% Similarity=0.243 Sum_probs=147.7
Q ss_pred ccCcccccCCCCCCCCCCCCCCCCCccccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCC
Q 005315 135 FDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPL 214 (702)
Q Consensus 135 ~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spd 214 (702)
..+.....+.|+.|.||.-.++.. .. .--.+.+-|++.++|+...+-+. .++.+.....|.+.+.|-.||||
T Consensus 44 ~~~s~~~~~~p~df~pt~~h~~~r-s~-----~~g~~~d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~d 115 (737)
T KOG1524|consen 44 SRDSVEVAKLPDDFVPTDMHLGGR-SS-----GGGKGSDTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPD 115 (737)
T ss_pred cchhhhhhhCCcccCCcccccccc-cc-----CCCCCcceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCC
Confidence 345556667888888876543321 11 11236678999999988777665 57777888999999999999999
Q ss_pred CcEEEEEeCCc-eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccC
Q 005315 215 GTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG 293 (702)
Q Consensus 215 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~ 293 (702)
|+-|++++.|| |++|.-.|-...........|+|++|.|+...++.+..+ .+.|=.+.-...+-..+.
T Consensus 116 GtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-----------h~~IKpL~~n~k~i~WkA 184 (737)
T KOG1524|consen 116 GAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-----------HISIKPLAANSKIIRWRA 184 (737)
T ss_pred CceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC-----------eEEEeecccccceeEEec
Confidence 99999999999 779998722222222234469999999999988888776 577766666666677788
Q ss_pred CCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEE
Q 005315 294 SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISL 367 (702)
Q Consensus 294 ~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~ 367 (702)
|.+-+. ++.|++ ...++++++ |-..+|||..... +-....|.-+|++++|+|+ ..+++
T Consensus 185 HDGiiL-------------~~~W~~-~s~lI~sgGED~kfKvWD~~G~~-Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 185 HDGLVL-------------SLSWST-QSNIIASGGEDFRFKIWDAQGAN-LFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred cCcEEE-------------EeecCc-cccceeecCCceeEEeecccCcc-cccCChhccceeeeeeccc-cceee
Confidence 877764 789999 999999999 9999999987443 3344456667999999999 55554
No 173
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=8.7e-17 Score=164.58 Aligned_cols=214 Identities=14% Similarity=0.225 Sum_probs=174.4
Q ss_pred eEEEEeCCceEE-EecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee--cCCCeeEE
Q 005315 174 QFVIRSGTDTEV-LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLI 249 (702)
Q Consensus 174 ~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i 249 (702)
.+++.+|....+ +|.. ....++..|.+|...|.|+.|+++..+|+.|..+| |++||+. ..+.+..+ +..++.++
T Consensus 41 r~~~~Gg~~~k~~L~~i-~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vrtLtgh~~~~~sv 118 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAI-GKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVRTLTGHLLNITSV 118 (825)
T ss_pred eeeccCCCceeeccccc-cCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhhhhhccccCccee
Confidence 456666666555 9998 45556667899999999999999999999999998 7899999 77766655 34469999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-
Q 005315 250 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 328 (702)
Q Consensus 250 ~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~- 328 (702)
.|+|-|.|.++|+.| ..+++||++...+...+.+|...+. +++|+| +|++++.++
T Consensus 119 ~f~P~~~~~a~gStd----------td~~iwD~Rk~Gc~~~~~s~~~vv~-------------~l~lsP-~Gr~v~~g~e 174 (825)
T KOG0267|consen 119 DFHPYGEFFASGSTD----------TDLKIWDIRKKGCSHTYKSHTRVVD-------------VLRLSP-DGRWVASGGE 174 (825)
T ss_pred eeccceEEecccccc----------ccceehhhhccCceeeecCCcceeE-------------EEeecC-CCceeeccCC
Confidence 999999999999999 8899999998889999998776653 789999 999999999
Q ss_pred CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEc
Q 005315 329 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 408 (702)
Q Consensus 329 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 408 (702)
|.+++|||+..|+++..+..|...+..+.|+|..-.++. |+.+..+++|. +.+...+..............|+
T Consensus 175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~-----Gs~d~tv~f~d--letfe~I~s~~~~~~~v~~~~fn 247 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP-----GSSDRTVRFWD--LETFEVISSGKPETDGVRSLAFN 247 (825)
T ss_pred cceeeeecccccccccccccccccccccccCchhhhhcc-----CCCCceeeeec--cceeEEeeccCCccCCceeeeec
Confidence 799999999999999888888888999999999888888 77887777654 44444444444345555566788
Q ss_pred cCCCEEEEEEcc
Q 005315 409 SSGDYLAVKVDR 420 (702)
Q Consensus 409 ~~g~~l~~~~~~ 420 (702)
|+|..++.+...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 888877765543
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=1.5e-13 Score=141.74 Aligned_cols=274 Identities=11% Similarity=0.061 Sum_probs=166.5
Q ss_pred eEEEEeCCceEEEecCCCCCC--CcccccCCCcccceEEECCCCcEEEEEeC-C-ceEEeecCcCc--ceeeeecCC-Ce
Q 005315 174 QFVIRSGTDTEVLWNDARHLK--PEPVYKRSYWTESFVQWSPLGTYLATVHR-Q-GAAVWGGANTF--NRLMRYAHP-QV 246 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~v~~v~~Spdg~~lat~~~-~-~i~iw~~~~~~--~~~~~~~~~-~v 246 (702)
.|+....++.+.+|+....++ ....++ +.....++++||+|++|+.++. + +|.+|+....+ ..+...... ..
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 355555666777888732232 223332 3355778999999999987754 3 38889876222 223333333 47
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-Cc---EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc
Q 005315 247 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 322 (702)
Q Consensus 247 ~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~ 322 (702)
..++|+|+|++|++++... +.|.+|++.+ |. .+..+.+..... .+.++| +++
T Consensus 83 ~~i~~~~~g~~l~v~~~~~---------~~v~v~~~~~~g~~~~~~~~~~~~~~~~--------------~~~~~p-~g~ 138 (330)
T PRK11028 83 THISTDHQGRFLFSASYNA---------NCVSVSPLDKDGIPVAPIQIIEGLEGCH--------------SANIDP-DNR 138 (330)
T ss_pred eEEEECCCCCEEEEEEcCC---------CeEEEEEECCCCCCCCceeeccCCCccc--------------EeEeCC-CCC
Confidence 7899999999999887531 7899999863 32 222222222222 568999 999
Q ss_pred EEEEec--CCeEEEEecCCcccccc---e--ee-ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc--ee
Q 005315 323 YFAKLG--KNMISVYETESFTLIDK---K--SL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--EL 392 (702)
Q Consensus 323 ~la~~~--d~~i~v~d~~~~~~~~~---~--~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~ 392 (702)
+++++. ++.|.+|++.+...+.. . .. ...+...+.|+|+|+++++. ...++.+.+|.++..+.. .+
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~----~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV----NELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE----ecCCCEEEEEEEeCCCCCEEEE
Confidence 886665 79999999986433321 0 11 12346789999999998762 112444455555432222 22
Q ss_pred eeeeecc------cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCc
Q 005315 393 RQKNLFS------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH 466 (702)
Q Consensus 393 ~~~~~~~------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~ 466 (702)
....... .....+.++|+|++++++.... ..+.+|++...+.....+....-......++++|+|+
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~--------~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~ 286 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA--------SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK 286 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCC--------CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC
Confidence 2211111 1122467899999999874321 1278888876543322222101123456799999999
Q ss_pred EEEEEEc-CCCCCeEEEEEeec
Q 005315 467 RFAVIHG-DSPRPDISFYSMRT 487 (702)
Q Consensus 467 ~l~~~~~-d~~~~~v~i~d~~~ 487 (702)
+|+++.. ++ +|.+|+++.
T Consensus 287 ~l~va~~~~~---~v~v~~~~~ 305 (330)
T PRK11028 287 YLIAAGQKSH---HISVYEIDG 305 (330)
T ss_pred EEEEEEccCC---cEEEEEEcC
Confidence 9998876 44 899999853
No 175
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=5.2e-14 Score=150.32 Aligned_cols=249 Identities=13% Similarity=0.194 Sum_probs=158.2
Q ss_pred eEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccC
Q 005315 331 MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 410 (702)
Q Consensus 331 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 410 (702)
.|.++|...... .....+...+...+|||||+.|++... .++...|+++++.+.+.... ..+........|+|+
T Consensus 183 ~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~----~~g~~~i~~~dl~~g~~~~l-~~~~g~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSY----ANGRPRVYLLDLETGQRELV-GNFPGMTFAPRFSPD 256 (435)
T ss_pred EEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEe----cCCCCEEEEEECCCCcEEEe-ecCCCcccCcEECCC
Confidence 688888764432 223334456899999999999998532 23446889999876653221 112333445689999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccC
Q 005315 411 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 490 (702)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 490 (702)
|+.|++...... ...||.++..+... ..+..+.....+.+|+|||++|++.+.......|+++++.++.
T Consensus 257 G~~la~~~~~~g--------~~~Iy~~d~~~~~~--~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~- 325 (435)
T PRK05137 257 GRKVVMSLSQGG--------NTDIYTMDLRSGTT--TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN- 325 (435)
T ss_pred CCEEEEEEecCC--------CceEEEEECCCCce--EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-
Confidence 999887654321 14566655444333 3354556667789999999999998865444478888875433
Q ss_pred cCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeeccc-
Q 005315 491 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHE- 569 (702)
Q Consensus 491 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~- 569 (702)
...+.. .......+.|||+|++|++.........|.+||+.++..........+..+.|+|||++|+..+...-.
T Consensus 326 ---~~~lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 326 ---PRRISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred ---eEEeec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCC
Confidence 123322 233456789999999999876522235788899875443322223356789999999999887762000
Q ss_pred ccccEEEEEeccceeeeec-cccEeeEEEeeC
Q 005315 570 MENGFNIWSFNGKLLYRTL-KDHFFQFLWRPR 600 (702)
Q Consensus 570 ~d~~v~iw~~~g~~l~~~~-~~~i~~~~w~p~ 600 (702)
....++++++.|....... ...+...+|+|.
T Consensus 402 ~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 402 GAPKLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred CcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence 0035777788776554432 234677888875
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.1e-14 Score=150.01 Aligned_cols=321 Identities=13% Similarity=0.203 Sum_probs=202.6
Q ss_pred cceEEECCCCcEEEEEeCCceEEeecCcCcc-eeeee----cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005315 206 ESFVQWSPLGTYLATVHRQGAAVWGGANTFN-RLMRY----AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 279 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~-~~~~~----~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v 279 (702)
-.++.+++.|.+.+..+..++.+|... ... ..... +|. .+++.++||+++++|++..+ |.|.+
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~-~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~d----------GrI~v 231 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVP-KHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSD----------GRILV 231 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEec-ccceeeccchhhhhhcccceeEEeccccceEEEeccC----------CcEEE
Confidence 468899999999999999999999988 432 11111 233 38999999999999999999 99999
Q ss_pred EEccCC-----cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeecc-CC
Q 005315 280 FDVRTG-----KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-EN 352 (702)
Q Consensus 280 wd~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~-~~ 352 (702)
|.- -+ ...+.+.-|...+. ++.||+ +|.||.+|+ .+.+.+|.+.+++. ++.... ..
T Consensus 232 w~d-~~~~~~~~t~t~lHWH~~~V~-------------~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~k--qfLPRLgs~ 294 (792)
T KOG1963|consen 232 WRD-FGSSDDSETCTLLHWHHDEVN-------------SLSFSS-DGAYLLSGGREGVLVLWQLETGKK--QFLPRLGSP 294 (792)
T ss_pred Eec-cccccccccceEEEecccccc-------------eeEEec-CCceEeecccceEEEEEeecCCCc--ccccccCCe
Confidence 973 23 12344555555553 799999 999999999 99999999998762 222222 35
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc---eeeeeeec--------ccccceeEEccCCCEEEEEEccc
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE---ELRQKNLF--------SVSDCKMYWQSSGDYLAVKVDRY 421 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~--------~~~~~~~~~s~~g~~l~~~~~~~ 421 (702)
|..+.+|||+...++ ...|+.+.+ +..++.. .+...... ..-...+..+|.-+.++.....+
T Consensus 295 I~~i~vS~ds~~~sl-----~~~DNqI~l--i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g 367 (792)
T KOG1963|consen 295 ILHIVVSPDSDLYSL-----VLEDNQIHL--IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPG 367 (792)
T ss_pred eEEEEEcCCCCeEEE-----EecCceEEE--EeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCc
Confidence 899999999998887 335555443 3333222 12111111 11112234556444444444433
Q ss_pred ccccccccccEEEEEEecCCcceeEE--Eec------CCCCceeEEEEeeCCcEEEEEEcC-------CCCCeEEEEEee
Q 005315 422 TKTKKSTYTGFELFRIKERDIPIEVL--ELD------NKNDKIIAFAWEPKGHRFAVIHGD-------SPRPDISFYSMR 486 (702)
Q Consensus 422 ~~~~~~~~~~~~l~~l~~~~~~~~~~--~l~------~h~~~v~~~~~sp~g~~l~~~~~d-------~~~~~v~i~d~~ 486 (702)
. +++|++-....-.... ... .+...+++++.+-.|.++++.-.. .....+++|-..
T Consensus 368 ~---------vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 368 H---------VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred e---------EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 3 5566554432211110 010 123356777777789999887531 112378899876
Q ss_pred cccCcCceEEEEEcC-CC--c-eeEEEEccCCC-EEEEEeccCCCceEEEEECCC------------cceeeecccCcee
Q 005315 487 TAQHAGRVSKLTTLK-GK--Q-ANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDE------------LETMATAEHFMAT 549 (702)
Q Consensus 487 ~~~~~~~~~~~~~~~-~~--~-v~~~~~spdg~-~l~~~~~~~~dg~v~i~d~~~------------~~~~~~~~~~~i~ 549 (702)
..... +.+...+. .| . +..+..+|... .+++++. ||.++||-+.+ +..+...|..+++
T Consensus 439 ~~~kt--~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~---dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~ 513 (792)
T KOG1963|consen 439 PNSKT--FILNTKINNPHGNAFVATIFLNPTRSVRCVTASV---DGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPIT 513 (792)
T ss_pred CCcce--eEEEEEEecCCCceeEEEEEecCcccceeEEecc---CCeEEEEEEecccccCcCccceEEeeeeccccCccc
Confidence 44322 23333332 22 2 23334444443 7888877 99999998842 2334446678999
Q ss_pred eeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 550 DVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 550 ~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
.++||.||..|+.+ . ++.|.|||+..
T Consensus 514 a~~fs~dGslla~s-~-----~~~Itiwd~~~ 539 (792)
T KOG1963|consen 514 ALCFSQDGSLLAVS-F-----DDTITIWDYDT 539 (792)
T ss_pred chhhcCCCcEEEEe-c-----CCEEEEecCCC
Confidence 99999999655554 4 59999999875
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=3.3e-13 Score=144.48 Aligned_cols=358 Identities=18% Similarity=0.314 Sum_probs=248.0
Q ss_pred cccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc-eeeeec--CC-CeeEEEe-cCCCC-EEEEEcC-CCCCCC
Q 005315 198 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-RLMRYA--HP-QVKLIDF-SPGEK-YLVTYSS-HEPSNP 269 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-~~~~~~--~~-~v~~i~f-Spdg~-~l~t~s~-d~~~~~ 269 (702)
.+..|...+.++.|++.+..++.++.++ +.+|+.. ... .+..+. +. .+..+.+ ++++. +++..+. +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----- 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLD-NGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD----- 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcC-CCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCC-----
Confidence 4567889999999999999999998777 8899998 443 444443 22 4677777 88888 5555444 6
Q ss_pred cCCCccEEEEEEccC-CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccce
Q 005315 270 RDANRVVINIFDVRT-GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKK 346 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~ 346 (702)
+.+.+|+... +.....+..|...+. .+.|+| ++++++.++ ++.+.+|++.....+...
T Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 134 -----GTVKLWDLSTPGKLIRTLEGHSESVT-------------SLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred -----ccEEEEEecCCCeEEEEEecCcccEE-------------EEEECC-CCCEEEecCCCCCceEEEEcCCCceEEee
Confidence 7899999977 778888888877662 689999 998877776 899999999986666555
Q ss_pred eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceee-eeeecccccceeEEccCCCEEEEEEccccccc
Q 005315 347 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR-QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 425 (702)
Q Consensus 347 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 425 (702)
..|...|.+++|+|++..++.. ++.++.+++| +......+. ....+.... ...|++++.+++.+..++.
T Consensus 195 ~~~~~~v~~~~~~~~~~~~~~~----~~~d~~i~~w--d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~--- 264 (466)
T COG2319 195 AGHTDPVSSLAFSPDGGLLIAS----GSSDGTIRLW--DLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT--- 264 (466)
T ss_pred ccCCCceEEEEEcCCcceEEEE----ecCCCcEEEE--ECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc---
Confidence 5677889999999999833331 3567777755 555444443 122222221 1168999988887777666
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEE-EcCCCc
Q 005315 426 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT-TLKGKQ 504 (702)
Q Consensus 426 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~ 504 (702)
+.+|++.......... ..|...+.++.|+|++..+++++.++ .+.+|++...... .... ......
T Consensus 265 ------~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~---~~~~~~~~~~~ 330 (466)
T COG2319 265 ------IRLWDLRSSSSLLRTL--SGHSSSVLSVAFSPDGKLLASGSSDG---TVRLWDLETGKLL---SSLTLKGHEGP 330 (466)
T ss_pred ------EEEeeecCCCcEEEEE--ecCCccEEEEEECCCCCEEEEeeCCC---cEEEEEcCCCceE---EEeeecccCCc
Confidence 7888887655422222 57789999999999998888877775 6999987654321 1111 122224
Q ss_pred eeEEEEccCCCEEEEE-eccCCCceEEEEECCCcceeeecccC-ceeeeEECCCCCEEEE-EEeecccccccEEEEEecc
Q 005315 505 ANALFWSPSGRFIVLA-GLKGFNGQLEFYNVDELETMATAEHF-MATDVEWDPTGRYVAT-AVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 505 v~~~~~spdg~~l~~~-~~~~~dg~v~i~d~~~~~~~~~~~~~-~i~~~~~spdg~~l~t-~s~~~~~~d~~v~iw~~~g 581 (702)
+..+.|++++..++.+ .. ++.+.+|++............ .+..+.+++ ...++. +.. ++.+.+|+...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~ 401 (466)
T COG2319 331 VSSLSFSPDGSLLVSGGSD---DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGST-----DGTVRLWDLST 401 (466)
T ss_pred eEEEEECCCCCEEEEeecC---CCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecC-----CCceEEEeccc
Confidence 7888884443566666 34 788999999876633332222 278899999 633333 345 89999999885
Q ss_pred ceeeee--cc-ccEeeEEEeeCCCCCCChhhHHHH
Q 005315 582 KLLYRT--LK-DHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 582 ~~l~~~--~~-~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
...... .. ..+....+++++..++++..+..+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (466)
T COG2319 402 GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTI 436 (466)
T ss_pred CeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcE
Confidence 443322 22 678888999998888775554444
No 178
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.6e-14 Score=153.61 Aligned_cols=238 Identities=14% Similarity=0.197 Sum_probs=156.1
Q ss_pred CeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEcc
Q 005315 330 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 409 (702)
Q Consensus 330 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 409 (702)
..|.+||....... ....+...+..+.|||+|+.|++... .++...|+++++.+.+...... .......+.|+|
T Consensus 184 ~~i~i~d~dg~~~~-~lt~~~~~v~~p~wSPDG~~la~~s~----~~~~~~i~i~dl~tg~~~~l~~-~~g~~~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFNQF-IVNRSSQPLMSPAWSPDGSKLAYVSF----ENKKSQLVVHDLRSGARKVVAS-FRGHNGAPAFSP 257 (429)
T ss_pred EEEEEECCCCCCce-EeccCCCccccceEcCCCCEEEEEEe----cCCCcEEEEEeCCCCceEEEec-CCCccCceeECC
Confidence 58999998755422 22233445889999999999988421 2344578888886654322111 222233578999
Q ss_pred CCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 410 SGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 410 ~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
+|+.|++... ++. ..||.++..+... ..++.+...+.+++|+|||+.|++++.... ...||++...
T Consensus 258 DG~~La~~~~~~g~---------~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g--~~~I~~~~~~ 324 (429)
T PRK01742 258 DGSRLAFASSKDGV---------LNIYVMGANGGTP--SQLTSGAGNNTEPSWSPDGQSILFTSDRSG--SPQVYRMSAS 324 (429)
T ss_pred CCCEEEEEEecCCc---------EEEEEEECCCCCe--EeeccCCCCcCCEEECCCCCEEEEEECCCC--CceEEEEECC
Confidence 9999998764 322 4677666443332 335556777889999999999988875322 5677776543
Q ss_pred cCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecc
Q 005315 489 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVH 568 (702)
Q Consensus 489 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~ 568 (702)
... ...+ .... ..+.|||+|++|++++. + .+.+||+.+++............+.|+|||++|++++.
T Consensus 325 ~~~--~~~l---~~~~-~~~~~SpDG~~ia~~~~---~-~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~--- 391 (429)
T PRK01742 325 GGG--ASLV---GGRG-YSAQISADGKTLVMING---D-NVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSST--- 391 (429)
T ss_pred CCC--eEEe---cCCC-CCccCCCCCCEEEEEcC---C-CEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEc---
Confidence 221 1122 1112 45789999999998874 4 46669998776443222233467899999999999998
Q ss_pred cccccEEEEE---eccceeeee--ccccEeeEEEeeCC
Q 005315 569 EMENGFNIWS---FNGKLLYRT--LKDHFFQFLWRPRP 601 (702)
Q Consensus 569 ~~d~~v~iw~---~~g~~l~~~--~~~~i~~~~w~p~~ 601 (702)
++...+|. .+|+..... +.+.+..++|+|.-
T Consensus 392 --~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 392 --QGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred --CCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence 77777665 457766555 44678889999863
No 179
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=2.7e-13 Score=139.40 Aligned_cols=313 Identities=17% Similarity=0.220 Sum_probs=182.0
Q ss_pred cEEEEEe-CCc-eEEeecCcCcceeeeecCC-Ce-eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeec
Q 005315 216 TYLATVH-RQG-AAVWGGANTFNRLMRYAHP-QV-KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 291 (702)
Q Consensus 216 ~~lat~~-~~~-i~iw~~~~~~~~~~~~~~~-~v-~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~ 291 (702)
.+++... .++ +.|.|.. +.+.+.++... .+ ..+.|||||+|+.+++.+ +.|.++|+.+++.++++
T Consensus 6 ~l~~V~~~~~~~v~viD~~-t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd----------g~vsviD~~~~~~v~~i 74 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGA-TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD----------GTVSVIDLATGKVVATI 74 (369)
T ss_dssp GEEEEEEGGGTEEEEEETT-T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT----------SEEEEEETTSSSEEEEE
T ss_pred cEEEEEecCCCEEEEEECC-CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC----------CeEEEEECCcccEEEEE
Confidence 4444433 344 8899999 88988888754 34 457899999999999988 99999999999999999
Q ss_pred cCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeec-------cCCeeEEEeCCCC
Q 005315 292 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLK-------VENVMDFSWSPTD 362 (702)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~sp~~ 362 (702)
....... .+++|+ ||+|++.+. ++.+.|+|..+.+++...... .+.+..+.-+|..
T Consensus 75 ~~G~~~~--------------~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 75 KVGGNPR--------------GIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp E-SSEEE--------------EEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred ecCCCcc--------------eEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC
Confidence 8877665 789999 999999887 899999999998877543221 2346778888888
Q ss_pred CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecc-cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCC
Q 005315 363 PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD 441 (702)
Q Consensus 363 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 441 (702)
..+++. -....+||+.+....+.+....+.. .......|+|+|+|++++.....+ +.+++.....
T Consensus 140 ~~fVv~------lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~--------i~viD~~~~k 205 (369)
T PF02239_consen 140 PEFVVN------LKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK--------IAVIDTKTGK 205 (369)
T ss_dssp SEEEEE------ETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE--------EEEEETTTTE
T ss_pred CEEEEE------EccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccce--------eEEEeeccce
Confidence 855542 3445689999876655443322211 112235799999999886554321 2333322211
Q ss_pred cceeEEEe--cCCCCceeEE-------EEee--CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEE
Q 005315 442 IPIEVLEL--DNKNDKIIAF-------AWEP--KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANAL 508 (702)
Q Consensus 442 ~~~~~~~l--~~h~~~v~~~-------~~sp--~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~ 508 (702)
. +..+.. ..|..++..+ .|.. .+...+...+.. .+.+|+..+ ++.+.++. +.+ .-+
T Consensus 206 ~-v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~---~v~v~d~~~------wkvv~~I~~~G~g-lFi 274 (369)
T PF02239_consen 206 L-VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD---PVSVHDDYA------WKVVKTIPTQGGG-LFI 274 (369)
T ss_dssp E-EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE-----TTT-STTTB------TSEEEEEE-SSSS---E
T ss_pred E-EEEeeccccccccccccccCCCcceEEeeccccceecccccCC---ccccchhhc------CeEEEEEECCCCc-cee
Confidence 1 111111 0122222222 2322 222222222222 344555433 22555554 334 677
Q ss_pred EEccCCCEEEEEe-ccCCCceEEEEECCCcceeeecc---cCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc
Q 005315 509 FWSPSGRFIVLAG-LKGFNGQLEFYNVDELETMATAE---HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 509 ~~spdg~~l~~~~-~~~~dg~v~i~d~~~~~~~~~~~---~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
..+|+++++.+.. .+...+.|.++|..+.+.+.+.. ...+.++.|++||+++..+... .++.|.|||...-
T Consensus 275 ~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~---~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 275 KTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWD---GNGAIVVYDAKTL 349 (369)
T ss_dssp E--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE-----TTEEEEEETTTT
T ss_pred ecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEec---CCCEEEEEECCCc
Confidence 8899999999982 12226899999999988776532 2348999999999988777763 1337999997643
No 180
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.8e-14 Score=153.32 Aligned_cols=233 Identities=15% Similarity=0.112 Sum_probs=146.0
Q ss_pred eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcE--EeeccCCCcccccCCC
Q 005315 226 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV--MRDFKGSADEFAVGGT 303 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~--~~~~~~~~~~~~~~~~ 303 (702)
|.+||.++........+...+.++.|||||++|++++.+. ....|++||+.+|+. +..+.++..
T Consensus 186 i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~-------~~~~i~i~dl~tg~~~~l~~~~g~~~------- 251 (429)
T PRK01742 186 VRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN-------KKSQLVVHDLRSGARKVVASFRGHNG------- 251 (429)
T ss_pred EEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC-------CCcEEEEEeCCCCceEEEecCCCccC-------
Confidence 7799988433332222333599999999999999887541 125799999988864 333433321
Q ss_pred CCCCCcccceEEEcCCCCcEEEEec--CCeEEEE--ecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCc
Q 005315 304 GGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVY--ETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA 379 (702)
Q Consensus 304 ~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~--d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~ 379 (702)
.++||| ||+.|+.+. ++.+.|| ++.++... ....+...+..+.|+|+|+.|++. +..++..
T Consensus 252 ---------~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~i~f~----s~~~g~~ 316 (429)
T PRK01742 252 ---------APAFSP-DGSRLAFASSKDGVLNIYVMGANGGTPS-QLTSGAGNNTEPSWSPDGQSILFT----SDRSGSP 316 (429)
T ss_pred ---------ceeECC-CCCEEEEEEecCCcEEEEEEECCCCCeE-eeccCCCCcCCEEECCCCCEEEEE----ECCCCCc
Confidence 469999 999888764 6665555 55554432 222233346789999999988873 2245667
Q ss_pred EEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEE
Q 005315 380 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF 459 (702)
Q Consensus 380 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~ 459 (702)
+||.++......... . ... ....|+|+|++|++...+. +.+|++.... ...+. . .....++
T Consensus 317 ~I~~~~~~~~~~~~l-~-~~~--~~~~~SpDG~~ia~~~~~~----------i~~~Dl~~g~--~~~lt--~-~~~~~~~ 377 (429)
T PRK01742 317 QVYRMSASGGGASLV-G-GRG--YSAQISADGKTLVMINGDN----------VVKQDLTSGS--TEVLS--S-TFLDESP 377 (429)
T ss_pred eEEEEECCCCCeEEe-c-CCC--CCccCCCCCCEEEEEcCCC----------EEEEECCCCC--eEEec--C-CCCCCCc
Confidence 888887655432111 1 111 2357999999998876532 3445544322 11111 1 1234568
Q ss_pred EEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEEEEccC
Q 005315 460 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPS 513 (702)
Q Consensus 460 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spd 513 (702)
+|+|+|++|++++.++ ...+|.+....+. .+..+.. ..+..++|||-
T Consensus 378 ~~sPdG~~i~~~s~~g---~~~~l~~~~~~G~----~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 378 SISPNGIMIIYSSTQG---LGKVLQLVSADGR----FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred eECCCCCEEEEEEcCC---CceEEEEEECCCC----ceEEccCCCCCCCCcccCCC
Confidence 8999999999999887 5666665432332 4444543 35788999984
No 181
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=6.7e-14 Score=149.50 Aligned_cols=243 Identities=15% Similarity=0.130 Sum_probs=144.1
Q ss_pred eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCC
Q 005315 226 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 305 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~ 305 (702)
|.+||..+........+...+.+++|||||++|++.+... +...|++||+.+|+... +........
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~-------g~~~i~~~dl~~g~~~~-l~~~~g~~~------ 249 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN-------GRPRVYLLDLETGQREL-VGNFPGMTF------ 249 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC-------CCCEEEEEECCCCcEEE-eecCCCccc------
Confidence 6688887333333333444699999999999999887541 12689999998887533 322222211
Q ss_pred CCCcccceEEEcCCCCcEEEEec--CC--eEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEE
Q 005315 306 VAGVSWPVFRWGGGKDKYFAKLG--KN--MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 381 (702)
Q Consensus 306 ~~~~~w~~~~~s~~dg~~la~~~--d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 381 (702)
.+.||| ||+.|+... ++ .|.+|++.++.... ...+........|+|+|+.|++... .++...|
T Consensus 250 -------~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~----~~g~~~I 316 (435)
T PRK05137 250 -------APRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESD----RSGSPQL 316 (435)
T ss_pred -------CcEECC-CCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEEC----CCCCCeE
Confidence 469999 999876543 44 47777877664321 1112222455777787777776211 2222344
Q ss_pred EEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEE
Q 005315 382 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 461 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 461 (702)
++++... .....+. .+.+.+....|
T Consensus 317 y~~d~~g-----------------------------------------------------~~~~~lt--~~~~~~~~~~~ 341 (435)
T PRK05137 317 YVMNADG-----------------------------------------------------SNPRRIS--FGGGRYSTPVW 341 (435)
T ss_pred EEEECCC-----------------------------------------------------CCeEEee--cCCCcccCeEE
Confidence 4443221 1111111 12344556789
Q ss_pred eeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCC---ceEEEEECCCcc
Q 005315 462 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFN---GQLEFYNVDELE 538 (702)
Q Consensus 462 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~d---g~v~i~d~~~~~ 538 (702)
+|+|++|++.+.+.....|.+|++.++.. ..+. .+..+..+.|||||+.|+..+..... ..|+++++.++.
T Consensus 342 SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 342 SPRGDLIAFTKQGGGQFSIGVMKPDGSGE----RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCCce----Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 99999999887654334677888743321 1221 12346789999999999886642211 368888987655
Q ss_pred eeeecccCceeeeEECCC
Q 005315 539 TMATAEHFMATDVEWDPT 556 (702)
Q Consensus 539 ~~~~~~~~~i~~~~~spd 556 (702)
.........+...+|+|-
T Consensus 416 ~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 416 EREVPTPGDASDPAWSPL 433 (435)
T ss_pred eEEccCCCCccCcccCCC
Confidence 433233345678889873
No 182
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=3.2e-14 Score=150.91 Aligned_cols=236 Identities=14% Similarity=0.075 Sum_probs=148.5
Q ss_pred EecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCC----ceEEeecCcCcceeeeecC-CCeeEEEecCCCCEEEE
Q 005315 186 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----GAAVWGGANTFNRLMRYAH-PQVKLIDFSPGEKYLVT 260 (702)
Q Consensus 186 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~i~iw~~~~~~~~~~~~~~-~~v~~i~fSpdg~~l~t 260 (702)
+|+. .+.....+..+...+.+++|||||+.||+.+.. .+.+|++. +++....... ..+..+.|||||++|+.
T Consensus 183 ~~d~--dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~-~G~~~~l~~~~~~~~~~~~SPDG~~La~ 259 (429)
T PRK03629 183 VSDY--DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVRQVASFPRHNGAPAFSPDGSKLAF 259 (429)
T ss_pred EEcC--CCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence 4444 344444556677789999999999999986532 27789988 5543222222 23667999999999987
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEE--e
Q 005315 261 YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVY--E 336 (702)
Q Consensus 261 ~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~--d 336 (702)
..... +...|++||+.+++..+....+.... .+.|+| ||+.|+..+ ++...|| +
T Consensus 260 ~~~~~-------g~~~I~~~d~~tg~~~~lt~~~~~~~--------------~~~wSP-DG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 260 ALSKT-------GSLNLYVMDLASGQIRQVTDGRSNNT--------------EPTWFP-DSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred EEcCC-------CCcEEEEEECCCCCEEEccCCCCCcC--------------ceEECC-CCCEEEEEeCCCCCceEEEEE
Confidence 64320 11469999998887655443332222 579999 999988777 3444444 5
Q ss_pred cCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEE
Q 005315 337 TESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 416 (702)
Q Consensus 337 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 416 (702)
+.++... .............|||+|+.|++... .++...|+++++.+......... .......|+|||++|++
T Consensus 318 ~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~----~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 318 INGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSS----NGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CCCCCeE-EeecCCCCccCEEECCCCCEEEEEEc----cCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEE
Confidence 6554332 12122233567899999999987422 33455788888766543221111 12335689999999999
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee
Q 005315 417 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 463 (702)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 463 (702)
.+.++.. ..++.+...+... ..+++|.+.+...+|+|
T Consensus 391 ~s~~~~~--------~~l~~~~~~G~~~--~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQGMG--------SVLNLVSTDGRFK--ARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEcCCCc--------eEEEEEECCCCCe--EECccCCCCcCCcccCC
Confidence 8876541 2344443333222 34556788889999997
No 183
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=1.6e-14 Score=138.85 Aligned_cols=140 Identities=14% Similarity=0.237 Sum_probs=111.2
Q ss_pred cccceEEECCCCc-EEEEEeCCc-eEEeecC----cCc-cee---e--eecCCCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005315 204 WTESFVQWSPLGT-YLATVHRQG-AAVWGGA----NTF-NRL---M--RYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRD 271 (702)
Q Consensus 204 ~~v~~v~~Spdg~-~lat~~~~~-i~iw~~~----~~~-~~~---~--~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~ 271 (702)
.++..+.|.+++. .|||++.|. |+||.+. +++ ..+ . ..|+..|+++.|+|+|..||+|+.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~------- 86 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG------- 86 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC-------
Confidence 4678888888776 999999988 9999654 111 111 1 1244469999999999999999999
Q ss_pred CCccEEEEEEcc--------C--------CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEE
Q 005315 272 ANRVVINIFDVR--------T--------GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISV 334 (702)
Q Consensus 272 ~~~~~i~vwd~~--------~--------g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v 334 (702)
+.|.+|... + ....+.+.+|...+ + .++|+| ++.++++++ |+.+.+
T Consensus 87 ---g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~di------------y-dL~Ws~-d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 87 ---GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDI------------Y-DLAWSP-DSNFLVSGSVDNSVRL 149 (434)
T ss_pred ---ceEEEEEecCcCCccccchhhhCccceEEEEEecccccch------------h-hhhccC-CCceeeeeeccceEEE
Confidence 999999864 2 11234555565554 2 689999 999999999 999999
Q ss_pred EecCCcccccceeeccCCeeEEEeCCCCCeEEE
Q 005315 335 YETESFTLIDKKSLKVENVMDFSWSPTDPIISL 367 (702)
Q Consensus 335 ~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~ 367 (702)
||+..|.++.....|...++.++|.|-++++++
T Consensus 150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred EEeccceeEeeccccccccceeecchhhhhhhh
Confidence 999999998887778888999999999999998
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=3.8e-14 Score=130.35 Aligned_cols=288 Identities=14% Similarity=0.248 Sum_probs=181.9
Q ss_pred CcccceEEEC--CC-CcEEEEEeC-----CceEEeecC-cCcce--eeeecCC-CeeEEEecCCCC-----EEEEEcCCC
Q 005315 203 YWTESFVQWS--PL-GTYLATVHR-----QGAAVWGGA-NTFNR--LMRYAHP-QVKLIDFSPGEK-----YLVTYSSHE 265 (702)
Q Consensus 203 ~~~v~~v~~S--pd-g~~lat~~~-----~~i~iw~~~-~~~~~--~~~~~~~-~v~~i~fSpdg~-----~l~t~s~d~ 265 (702)
.|+...+.|| |+ +-+||.|+- +.|.|-.+. .+++. ...|.|+ .++.+.|.|+.+ .|||.+ |
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D- 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D- 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-
Confidence 4778888898 33 457888873 335554332 13333 3345677 499999999863 455544 3
Q ss_pred CCCCcCCCccEEEEEEccC--CcE--EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCc
Q 005315 266 PSNPRDANRVVINIFDVRT--GKV--MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF 340 (702)
Q Consensus 266 ~~~~~~~~~~~i~vwd~~~--g~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~ 340 (702)
.+++|.+.. ++. ...+..+.... ..++.+ +|.|+.-+-++|.+++ |-+..|||+.++
T Consensus 122 ----------~LRlWri~~ee~~~~~~~~L~~~kns~---~~aPlT-----SFDWne~dp~~igtSSiDTTCTiWdie~~ 183 (364)
T KOG0290|consen 122 ----------FLRLWRIGDEESRVELQSVLNNNKNSE---FCAPLT-----SFDWNEVDPNLIGTSSIDTTCTIWDIETG 183 (364)
T ss_pred ----------eEEEEeccCcCCceehhhhhccCcccc---cCCccc-----ccccccCCcceeEeecccCeEEEEEEeec
Confidence 499999863 221 11222222111 122333 4555542667888888 999999999986
Q ss_pred cc---ccceeeccCCeeEEEeCCCCC-eEEEEeecCCCCCCCcEEEEEecCCcc-eeeeeeecccccceeEEccCC-CEE
Q 005315 341 TL---IDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDCKMYWQSSG-DYL 414 (702)
Q Consensus 341 ~~---~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g-~~l 414 (702)
.. ......|...|.+++|+..+. .+|+ .|+|+.+|++.+..-... .+....-....-.++.|+++. +++
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s~~~FAS-----vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGSRDVFAS-----VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCccceEEE-----ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHH
Confidence 32 233345777899999999764 5566 778888887655433222 222222123344567888755 466
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC-CcEEEEEEcCCCCCeEEEEEeecccCcCc
Q 005315 415 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHAGR 493 (702)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 493 (702)
++...+.. .+.+.+++....++ ..+.+|.+.|+.++|.|. +..|++++.|. .+.|||+.......-
T Consensus 259 ATf~~dS~--------~V~iLDiR~P~tpv--a~L~~H~a~VNgIaWaPhS~~hictaGDD~---qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 259 ATFAMDSN--------KVVILDIRVPCTPV--ARLRNHQASVNGIAWAPHSSSHICTAGDDC---QALIWDLQQMPRENG 325 (364)
T ss_pred hhhhcCCc--------eEEEEEecCCCcce--ehhhcCcccccceEecCCCCceeeecCCcc---eEEEEecccccccCC
Confidence 66555433 26788888766655 567899999999999994 56788888888 999999976433111
Q ss_pred eEEEEEc-CCCceeEEEEcc-CCCEEEEEeccCCCceEEEE
Q 005315 494 VSKLTTL-KGKQANALFWSP-SGRFIVLAGLKGFNGQLEFY 532 (702)
Q Consensus 494 ~~~~~~~-~~~~v~~~~~sp-dg~~l~~~~~~~~dg~v~i~ 532 (702)
..++..+ .++.|+.+.|+| .+.+++++. +..+.+.
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~----~kkleiL 362 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQPDWIAICF----GKKLEIL 362 (364)
T ss_pred CCchhhhhccceeeeeeecccCCCEEEEEe----cCeeeEE
Confidence 2233222 356799999996 567887776 4555553
No 185
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=4.9e-14 Score=149.69 Aligned_cols=248 Identities=15% Similarity=0.217 Sum_probs=154.8
Q ss_pred CeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEcc
Q 005315 330 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 409 (702)
Q Consensus 330 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 409 (702)
..|.++|..... ......+...+.+.+|||+|+.|++... .++...||++++.+++...... .........|+|
T Consensus 176 ~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~----~~~~~~I~~~dl~~g~~~~l~~-~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSF----ESKKPVVYVHDLATGRRRVVAN-FKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEc----cCCCcEEEEEECCCCCEEEeec-CCCCccceEECC
Confidence 456777764322 2222233456889999999999988421 3345679999987765433222 223334578999
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeeccc
Q 005315 410 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 489 (702)
Q Consensus 410 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 489 (702)
+|+.|++...... ...||.++..+... ..+..+.....+..|+|||++|++.+..+. ...||.+....
T Consensus 250 DG~~la~~~~~~g--------~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g--~~~Iy~~~~~~ 317 (427)
T PRK02889 250 DGRTLAVALSRDG--------NSQIYTVNADGSGL--RRLTQSSGIDTEPFFSPDGRSIYFTSDRGG--APQIYRMPASG 317 (427)
T ss_pred CCCEEEEEEccCC--------CceEEEEECCCCCc--EECCCCCCCCcCeEEcCCCCEEEEEecCCC--CcEEEEEECCC
Confidence 9999987544321 25777776544332 334445556677899999999998876433 34455543221
Q ss_pred CcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeeccc
Q 005315 490 HAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHE 569 (702)
Q Consensus 490 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~ 569 (702)
+ ....+ ++.+......+|||+|++|+..+.......|.+||+.+++............+.|+|||++|++++...
T Consensus 318 g--~~~~l-t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~-- 392 (427)
T PRK02889 318 G--AAQRV-TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQG-- 392 (427)
T ss_pred C--ceEEE-ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecC--
Confidence 1 11122 233444456899999999998765211237999999876654433333456889999999999988730
Q ss_pred ccccEEEEEeccceeeee--ccccEeeEEEeeC
Q 005315 570 MENGFNIWSFNGKLLYRT--LKDHFFQFLWRPR 600 (702)
Q Consensus 570 ~d~~v~iw~~~g~~l~~~--~~~~i~~~~w~p~ 600 (702)
....+.+.+.+|...... +.+.+...+|+|.
T Consensus 393 g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 393 GRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 012345556667655444 4467888899985
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.4e-14 Score=136.46 Aligned_cols=293 Identities=12% Similarity=0.146 Sum_probs=190.8
Q ss_pred ccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCc-----Ccceeeee--cC-CCeeEEEecCCCCEEEEEcCCCCCCC
Q 005315 199 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-----TFNRLMRY--AH-PQVKLIDFSPGEKYLVTYSSHEPSNP 269 (702)
Q Consensus 199 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-----~~~~~~~~--~~-~~v~~i~fSpdg~~l~t~s~d~~~~~ 269 (702)
+.+|.++|+.+.||.+|++||+|+.+. +.||++.. ..+++... +| .+|.|++|....++|.+|..+
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~----- 126 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW----- 126 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc-----
Confidence 468999999999999999999999998 89998761 11233333 34 359999999999999999999
Q ss_pred cCCCccEEEEEEccCCcEEeeccCCCc--ccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc-cccc
Q 005315 270 RDANRVVINIFDVRTGKVMRDFKGSAD--EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDK 345 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~-~~~~ 345 (702)
++|..-|+.+.+.+..+..... .+ + .+.-+| .++.|++.+ ++.|.+||..... ....
T Consensus 127 -----~~VI~HDiEt~qsi~V~~~~~~~~~V------------Y-~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 127 -----GTVIKHDIETKQSIYVANENNNRGDV------------Y-HMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred -----ceeEeeecccceeeeeecccCcccce------------e-ecccCC-CCceEEEEecCceEEEEeccCCCCCCce
Confidence 9999999999998887765432 22 2 467788 788888888 9999999987543 1111
Q ss_pred eee--ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecc-----cccceeEEccCCCEEEEEE
Q 005315 346 KSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-----VSDCKMYWQSSGDYLAVKV 418 (702)
Q Consensus 346 ~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~g~~l~~~~ 418 (702)
... .......+.|+|-...|+.. .+..+...+|....+....++...+.. ..-....|+|+|..++...
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~----~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR 263 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILV----NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR 263 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEe----ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence 111 12246788899987655543 334445566666655544333211111 1124557999999887755
Q ss_pred cccccccccccccEEEEEEecCCcceeEEEec----CCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCc-
Q 005315 419 DRYTKTKKSTYTGFELFRIKERDIPIEVLELD----NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR- 493 (702)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~----~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~- 493 (702)
.+.. -.+|++-...+++-..... .....+.+++|.-+- .+++++.+- .|++|.+.......-
T Consensus 264 R~~~---------P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~---~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 264 RGKC---------PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHW---GIHIWKLPRANDSYGF 330 (609)
T ss_pred ccCC---------CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCccc---ceEEEecCCCccccCc
Confidence 4432 2344444333332111100 011245567776444 377777776 799999853211100
Q ss_pred ----------------eEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 494 ----------------VSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 494 ----------------~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
-+.+..+.+| -++.+.|+|....|++.+. ...++||.-.
T Consensus 331 ~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV---E~~~KlWS~~ 387 (609)
T KOG4227|consen 331 TQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV---ENSFKLWSDH 387 (609)
T ss_pred cccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch---hhheeccccc
Confidence 1234445565 3689999999999998887 8899999654
No 187
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=2.5e-13 Score=139.59 Aligned_cols=335 Identities=15% Similarity=0.182 Sum_probs=187.1
Q ss_pred ceEE-EEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCC-CeeEE
Q 005315 173 DQFV-IRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLI 249 (702)
Q Consensus 173 ~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i 249 (702)
+.++ +-.+++...+.+. .+.+....+......-..+.|||||+++++++.++ +.++|+. +.+.+.++... ...++
T Consensus 6 ~l~~V~~~~~~~v~viD~-~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~-~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDG-ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA-TGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEET-TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT-SSSEEEEEE-SSEEEEE
T ss_pred cEEEEEecCCCEEEEEEC-CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC-cccEEEEEecCCCcceE
Confidence 3443 4445555557776 45666667765444445578999999999999888 8899999 88888888655 48899
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc-EEEEec
Q 005315 250 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG 328 (702)
Q Consensus 250 ~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~-~la~~~ 328 (702)
++|+||+|++++...+ +.+.|+|..+.+.++.+......... ....+. .+.-+| ... +++..-
T Consensus 84 ~~s~DG~~~~v~n~~~---------~~v~v~D~~tle~v~~I~~~~~~~~~-~~~Rv~-----aIv~s~-~~~~fVv~lk 147 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEP---------GTVSVIDAETLEPVKTIPTGGMPVDG-PESRVA-----AIVASP-GRPEFVVNLK 147 (369)
T ss_dssp EE--TTTEEEEEEEET---------TEEEEEETTT--EEEEEE--EE-TTT-S---EE-----EEEE-S-SSSEEEEEET
T ss_pred EEcCCCCEEEEEecCC---------CceeEeccccccceeecccccccccc-cCCCce-----eEEecC-CCCEEEEEEc
Confidence 9999999999887542 78999999999999887654322100 000001 456677 766 555555
Q ss_pred -CCeEEEEecCCcccccceeeccC-CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee----ccccc
Q 005315 329 -KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL----FSVSD 402 (702)
Q Consensus 329 -d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~ 402 (702)
.+.|.+.|....+.+....+..+ ...+..|+|++++++.. ..+.-.+..++..+.+.+..... +....
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va------~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~ 221 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA------ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG 221 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE------EGGGTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred cCCeEEEEEeccccccceeeecccccccccccCcccceeeec------ccccceeEEEeeccceEEEEeecccccccccc
Confidence 58888888766544433333332 36789999999988652 22333677777766654332111 11111
Q ss_pred -------ceeEEcc--CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEE--
Q 005315 403 -------CKMYWQS--SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI-- 471 (702)
Q Consensus 403 -------~~~~~s~--~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~-- 471 (702)
....|.. .+...+......... +++.... ..+..+.. ...+ .-+..+|+++++.+.
T Consensus 222 ~~~php~~g~vw~~~~~~~~~~~~ig~~~v~---------v~d~~~w-kvv~~I~~--~G~g-lFi~thP~s~~vwvd~~ 288 (369)
T PF02239_consen 222 ANFPHPGFGPVWATSGLGYFAIPLIGTDPVS---------VHDDYAW-KVVKTIPT--QGGG-LFIKTHPDSRYVWVDTF 288 (369)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEE--TTT----------STTTBT-SEEEEEE---SSSS---EE--TT-SEEEEE-T
T ss_pred ccccCCCcceEEeeccccceecccccCCccc---------cchhhcC-eEEEEEEC--CCCc-ceeecCCCCccEEeecc
Confidence 1112332 222221211111111 1111100 11122333 2333 677889999999998
Q ss_pred -EcCCCCCeEEEEEeecccCcCceEEEEEcC---CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCc
Q 005315 472 -HGDSPRPDISFYSMRTAQHAGRVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFM 547 (702)
Q Consensus 472 -~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~ 547 (702)
+.+ ...|.++|.++.. .+.++. +..+.++.|+++|+++.++.... ++.|.+||..+.+.+....
T Consensus 289 ~~~~--~~~v~viD~~tl~------~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~-~~~i~v~D~~Tl~~~~~i~--- 356 (369)
T PF02239_consen 289 LNPD--ADTVQVIDKKTLK------VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG-NGAIVVYDAKTLKEKKRIP--- 356 (369)
T ss_dssp T-SS--HT-EEEEECCGTE------EEE-HHHHHT--EEEEEE-TTSSEEEEEEE---TTEEEEEETTTTEEEEEEE---
T ss_pred CCCC--CceEEEEECcCcc------eeEEEeccCCCcEeccEECCCCCEEEEEEecC-CCEEEEEECCCcEEEEEEE---
Confidence 333 2389999997653 555654 33589999999999988887644 5589999999998887644
Q ss_pred eeeeEECCCCCEE
Q 005315 548 ATDVEWDPTGRYV 560 (702)
Q Consensus 548 i~~~~~spdg~~l 560 (702)
.-+|.|.|.
T Consensus 357 ----~~tP~G~f~ 365 (369)
T PF02239_consen 357 ----VPTPTGKFN 365 (369)
T ss_dssp ------SEEEEEE
T ss_pred ----eeCCCeEec
Confidence 345555553
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.65 E-value=2.4e-12 Score=137.70 Aligned_cols=344 Identities=21% Similarity=0.327 Sum_probs=232.8
Q ss_pred EeCCceEEEecCCCCCCCcccccCCC-cccceEEE-CCCCc-EEEEEeC-Cc-eEEeecCcC-cceeeee-cC-CCeeEE
Q 005315 178 RSGTDTEVLWNDARHLKPEPVYKRSY-WTESFVQW-SPLGT-YLATVHR-QG-AAVWGGANT-FNRLMRY-AH-PQVKLI 249 (702)
Q Consensus 178 ~~~~~~~~~w~~~~~~~~~~~~~~~~-~~v~~v~~-Spdg~-~lat~~~-~~-i~iw~~~~~-~~~~~~~-~~-~~v~~i 249 (702)
...++...+|+..........+..+. ..+..+.+ ++++. +++..+. ++ +.+|+.. . ......+ .| ..|..+
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~v~~~ 161 (466)
T COG2319 83 GSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS-TPGKLIRTLEGHSESVTSL 161 (466)
T ss_pred ecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec-CCCeEEEEEecCcccEEEE
Confidence 33577788999843332445555533 36666677 89998 4444444 65 7899998 4 4444433 34 459999
Q ss_pred EecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc-EEEEe
Q 005315 250 DFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKL 327 (702)
Q Consensus 250 ~fSpdg~~l~t~s~-d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~-~la~~ 327 (702)
+|+|+++++++++. + +.+++|++.++..+..+.+|...+. ++.|+| ++. +++++
T Consensus 162 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~~~~ 217 (466)
T COG2319 162 AFSPDGKLLASGSSLD----------GTIKLWDLRTGKPLSTLAGHTDPVS-------------SLAFSP-DGGLLIASG 217 (466)
T ss_pred EECCCCCEEEecCCCC----------CceEEEEcCCCceEEeeccCCCceE-------------EEEEcC-CcceEEEEe
Confidence 99999999988875 7 8999999988888999988776653 789999 998 66664
Q ss_pred c-CCeEEEEecCCccccc-ceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccccccee
Q 005315 328 G-KNMISVYETESFTLID-KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKM 405 (702)
Q Consensus 328 ~-d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 405 (702)
+ ++.|.+|+...+..+. ....|...+ ...|+|++..++. ++.++.+++|....... .+.....+......+
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~ 290 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS-----GSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSV 290 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE-----ecCCCcEEEeeecCCCc-EEEEEecCCccEEEE
Confidence 5 9999999888666554 344444443 3389999977776 66777777776654443 111112223344455
Q ss_pred EEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEE-EcCCCCCeEEEEE
Q 005315 406 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI-HGDSPRPDISFYS 484 (702)
Q Consensus 406 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~-~~d~~~~~v~i~d 484 (702)
.|+|++..++++..+.. +.+|++.......... ...|...+..+.|++++..++.+ ..++ .+.+|+
T Consensus 291 ~~~~~~~~~~~~~~d~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~ 357 (466)
T COG2319 291 AFSPDGKLLASGSSDGT---------VRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDG---TIRLWD 357 (466)
T ss_pred EECCCCCEEEEeeCCCc---------EEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCC---cEEeee
Confidence 78998888888666633 5777554433222111 23667778999994343566666 3454 788899
Q ss_pred eecccCcCceEEEEEcCCC-ceeEEEEccCCCEEEE-EeccCCCceEEEEECCCcceeeeccc--CceeeeEECCCCCEE
Q 005315 485 MRTAQHAGRVSKLTTLKGK-QANALFWSPSGRFIVL-AGLKGFNGQLEFYNVDELETMATAEH--FMATDVEWDPTGRYV 560 (702)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~-~~~~~~dg~v~i~d~~~~~~~~~~~~--~~i~~~~~spdg~~l 560 (702)
+.... ........ .+..+.+++ ...++. +.. ++.+.+|+............ ..+....+++++.++
T Consensus 358 ~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (466)
T COG2319 358 LRTGK------PLKTLEGHSNVLSVSFSP-DGRVVSSGST---DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSL 427 (466)
T ss_pred cCCCc------eeEEecCCceEEEEEECC-CCCEEEEecC---CCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEE
Confidence 86543 22222222 278899999 633333 344 89999999997766654333 688899999999999
Q ss_pred EEEEeecccccccEEEEEecc
Q 005315 561 ATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 561 ~t~s~~~~~~d~~v~iw~~~g 581 (702)
++++. ++.+++|+...
T Consensus 428 ~~~~~-----~~~~~~~~~~~ 443 (466)
T COG2319 428 ASGSS-----DNTIRLWDLKT 443 (466)
T ss_pred EEecC-----CCcEEEEeccC
Confidence 99888 89999999876
No 189
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=4e-14 Score=150.98 Aligned_cols=243 Identities=16% Similarity=0.184 Sum_probs=149.8
Q ss_pred cEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec----CCeEEEEecCCcccccceeecc
Q 005315 275 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 350 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~----d~~i~v~d~~~~~~~~~~~~~~ 350 (702)
..|.+||.. |...+.+..+...+. .++||| ||+.|++.+ ...|.+|++.++...... ...
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~-------------~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~~ 247 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPIL-------------SPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVA-SFR 247 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccc-------------cccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEec-cCC
Confidence 579999974 544444544433331 579999 999999876 246999999876532111 111
Q ss_pred CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 351 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 351 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
.....+.|+|+|+.|++.. +.++...|+++++.+.+
T Consensus 248 g~~~~~~~SpDG~~l~~~~----s~~g~~~Iy~~d~~~g~---------------------------------------- 283 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTL----SRDGNPEIYVMDLGSRQ---------------------------------------- 283 (433)
T ss_pred CCccCceECCCCCEEEEEE----eCCCCceEEEEECCCCC----------------------------------------
Confidence 2234677888887776521 12233344444432211
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEE
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 510 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 510 (702)
. ..+..+.....+++|+|+|++|++++.......|+++++.++. ...+. ..+.....++|
T Consensus 284 -------------~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----~~~lt-~~g~~~~~~~~ 343 (433)
T PRK04922 284 -------------L--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----AERLT-FQGNYNARASV 343 (433)
T ss_pred -------------e--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEee-cCCCCccCEEE
Confidence 0 1122233344567999999999988764433356666664433 12222 33444557899
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee--c
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT--L 588 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~--~ 588 (702)
||+|++|+..+.......|.+||+.+++.....+......+.|+|||++|+..+.. .....+.+++.+|...... +
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l~~~ 421 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRLVSA 421 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEec--CCceEEEEEECCCCceEEcccC
Confidence 99999998876422134799999987765543333345678999999999888762 1134577788888765544 3
Q ss_pred cccEeeEEEee
Q 005315 589 KDHFFQFLWRP 599 (702)
Q Consensus 589 ~~~i~~~~w~p 599 (702)
.+.+...+|+|
T Consensus 422 ~g~~~~p~wsp 432 (433)
T PRK04922 422 DGEVREPAWSP 432 (433)
T ss_pred CCCCCCCccCC
Confidence 35677888987
No 190
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.64 E-value=1.9e-14 Score=140.37 Aligned_cols=268 Identities=13% Similarity=0.186 Sum_probs=180.2
Q ss_pred eEEEcCCCC--cEEEEec-CCeEEEEecCCccc----ccceeeccCCeeEEEeCCCCC-eEEEEeecCCCCCCCcEEEEE
Q 005315 313 VFRWGGGKD--KYFAKLG-KNMISVYETESFTL----IDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLV 384 (702)
Q Consensus 313 ~~~~s~~dg--~~la~~~-d~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~ 384 (702)
+++|.| .. +.+|+|. .|+|-+|++.+... +-....|...|.++.|+|.+. .+.. .+.|++++...+
T Consensus 191 ~l~fHP-t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s-----sSyDGtiR~~D~ 264 (498)
T KOG4328|consen 191 SLAFHP-TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS-----SSYDGTIRLQDF 264 (498)
T ss_pred EEEecc-cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee-----eccCceeeeeee
Confidence 789999 55 4677777 89999999952221 112234666799999999753 3444 568888887777
Q ss_pred ecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC
Q 005315 385 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 464 (702)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 464 (702)
+....+.+....--...-+.+.++.+...++++.. ++.+.+|+++..+.....+.+ |...|.+++++|.
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~---------~G~f~~iD~R~~~s~~~~~~l--h~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN---------VGNFNVIDLRTDGSEYENLRL--HKKKITSVALNPV 333 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeec---------ccceEEEEeecCCccchhhhh--hhcccceeecCCC
Confidence 66554443332211122222334555555555443 335889999987765554444 6779999999995
Q ss_pred C-cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECC----Ccc
Q 005315 465 G-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD----ELE 538 (702)
Q Consensus 465 g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~----~~~ 538 (702)
. .+||+++.|+ +++|||++.-...... .+.++. .+.|++..|||.|-.|++.+. |..|+|||.. ...
T Consensus 334 ~p~~laT~s~D~---T~kIWD~R~l~~K~sp-~lst~~HrrsV~sAyFSPs~gtl~TT~~---D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 334 CPWFLATASLDQ---TAKIWDLRQLRGKASP-FLSTLPHRRSVNSAYFSPSGGTLLTTCQ---DNEIRVFDSSCISAKDE 406 (498)
T ss_pred CchheeecccCc---ceeeeehhhhcCCCCc-ceecccccceeeeeEEcCCCCceEeecc---CCceEEeecccccccCC
Confidence 4 5677888888 9999999865443211 344554 347999999999888999988 9999999984 222
Q ss_pred eeeec-------ccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccce-eeeeccc---cEee-EEEeeCCCCCCC
Q 005315 539 TMATA-------EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL-LYRTLKD---HFFQ-FLWRPRPPSFLT 606 (702)
Q Consensus 539 ~~~~~-------~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~-l~~~~~~---~i~~-~~w~p~~~~l~s 606 (702)
.+.+. .+-......|.|+-.+|+++.. ...|-|++-.|++ +...+.. .|.+ ..|+|.+..+++
T Consensus 407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~-----~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY-----PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred ccceeeccCcccccccchhheeCCCccEEEEecc-----CcceeEEcCCCCEEeeeccCccccccccceeecccccceec
Confidence 22221 1123346799999999999988 6789999988766 4443332 2333 589999987777
Q ss_pred hhh
Q 005315 607 PEK 609 (702)
Q Consensus 607 ~~~ 609 (702)
++.
T Consensus 482 G~~ 484 (498)
T KOG4328|consen 482 GGN 484 (498)
T ss_pred cCC
Confidence 653
No 191
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.2e-13 Score=146.80 Aligned_cols=245 Identities=15% Similarity=0.156 Sum_probs=156.5
Q ss_pred cEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec----CCeEEEEecCCcccccceeecc
Q 005315 275 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 350 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~----d~~i~v~d~~~~~~~~~~~~~~ 350 (702)
..|.++|. +|...+.+..+...+. .++||| ||+.|+..+ ...|.+|++.++...... ...
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~-------------~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-~~~ 239 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPII-------------SPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVA-NFK 239 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcc-------------cceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEee-cCC
Confidence 56888886 5555455544433332 579999 999998876 246999999877543211 112
Q ss_pred CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 351 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 351 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
..+....|||||+.|++. .+.++...||.++....... .............|+|||++|++.+++..
T Consensus 240 g~~~~~~~SPDG~~la~~----~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~g-------- 306 (427)
T PRK02889 240 GSNSAPAWSPDGRTLAVA----LSRDGNSQIYTVNADGSGLR-RLTQSSGIDTEPFFSPDGRSIYFTSDRGG-------- 306 (427)
T ss_pred CCccceEECCCCCEEEEE----EccCCCceEEEEECCCCCcE-ECCCCCCCCcCeEEcCCCCEEEEEecCCC--------
Confidence 345678999999998863 23566788999887654422 11112223345689999999998765421
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEE
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 510 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 510 (702)
...+|.++..+.....+... .......+|||+|+++++.+.++....|.+|++.++.. ..+. .......+.|
T Consensus 307 ~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt--~~~~~~~p~~ 378 (427)
T PRK02889 307 APQIYRMPASGGAAQRVTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALT--DTTRDESPSF 378 (427)
T ss_pred CcEEEEEECCCCceEEEecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEcc--CCCCccCceE
Confidence 24678776544433334332 23345689999999999888765444799999865431 1221 2223467899
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCCccee-eecccCceeeeEECCC
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDELETM-ATAEHFMATDVEWDPT 556 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~~~~~-~~~~~~~i~~~~~spd 556 (702)
+|||+.|+.++.......+.+.++...... ...+.+.+...+|+|-
T Consensus 379 spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 379 APNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 999999998875322345777777533222 1234467788899984
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=1.8e-14 Score=142.75 Aligned_cols=253 Identities=13% Similarity=0.233 Sum_probs=171.1
Q ss_pred CCCcccceEEECCCCcEEEEEeCCceEEee-cCcCcceeeeecCCCeeEEEe----c----CCCCEEEEEcCCCCCCCcC
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQGAAVWG-GANTFNRLMRYAHPQVKLIDF----S----PGEKYLVTYSSHEPSNPRD 271 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~i~iw~-~~~~~~~~~~~~~~~v~~i~f----S----pdg~~l~t~s~d~~~~~~~ 271 (702)
+|..-+.||.|+.....+.+++++.+.+|. +......+...+...+....+ | .....++.++.|
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~D------- 84 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSND------- 84 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCC-------
Confidence 566666799999888777666666666664 432222222222222221111 1 112467778888
Q ss_pred CCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeecc
Q 005315 272 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 350 (702)
Q Consensus 272 ~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~ 350 (702)
|.+.|.+ +.|+.-+....|...+. +-+|+| ||.-|.+++ ||.|++|.-..+ +-.......
T Consensus 85 ---Gkf~il~-k~~rVE~sv~AH~~A~~-------------~gRW~~-dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~~ 145 (737)
T KOG1524|consen 85 ---GRFVILN-KSARVERSISAHAAAIS-------------SGRWSP-DGAGLLTAGEDGVIKIWSRSGM-LRSTVVQNE 145 (737)
T ss_pred ---ceEEEec-ccchhhhhhhhhhhhhh-------------hcccCC-CCceeeeecCCceEEEEeccch-HHHHHhhcC
Confidence 8888888 68888888888887764 669999 999999888 999999986533 211122234
Q ss_pred CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 351 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 351 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
..|.+++|.|+.+.+++ +.++ ...| -.+ .+
T Consensus 146 ~~v~c~~W~p~S~~vl~-----c~g~-h~~I--KpL---------------------~~--------------------- 175 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVF-----CQGG-HISI--KPL---------------------AA--------------------- 175 (737)
T ss_pred ceeEEEEECCCCCceEE-----ecCC-eEEE--eec---------------------cc---------------------
Confidence 56999999999888877 2221 1111 000 00
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE--cCCCceeEE
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT--LKGKQANAL 508 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~v~~~ 508 (702)
....+...+|.+-|.++.|+|.++.+++++.|- ..++||.... .+.+ .+.++|+++
T Consensus 176 ------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~---kfKvWD~~G~-------~Lf~S~~~ey~ITSv 233 (737)
T KOG1524|consen 176 ------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF---RFKIWDAQGA-------NLFTSAAEEYAITSV 233 (737)
T ss_pred ------------ccceeEEeccCcEEEEeecCccccceeecCCce---eEEeecccCc-------ccccCChhccceeee
Confidence 112244558899999999999999999999998 8999997432 2332 235689999
Q ss_pred EEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEe
Q 005315 509 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 509 ~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
+|+|+ +.+++++. ++++ +.+...+.|..++||+||..++.|+.
T Consensus 234 a~npd-~~~~v~S~----nt~R---------~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 234 AFNPE-KDYLLWSY----NTAR---------FSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eeccc-cceeeeee----eeee---------ecCCCccceEEEEEcCCCceeecccc
Confidence 99999 66667764 4555 33344577889999999999999888
No 193
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.1e-15 Score=161.66 Aligned_cols=244 Identities=16% Similarity=0.276 Sum_probs=168.8
Q ss_pred ccceEEECCCCcE----EEEEeCCc-eEEeecCcCc------ceeeee--cCCCeeEEEecCCCC-EEEEEcCCCCCCCc
Q 005315 205 TESFVQWSPLGTY----LATVHRQG-AAVWGGANTF------NRLMRY--AHPQVKLIDFSPGEK-YLVTYSSHEPSNPR 270 (702)
Q Consensus 205 ~v~~v~~Spdg~~----lat~~~~~-i~iw~~~~~~------~~~~~~--~~~~v~~i~fSpdg~-~l~t~s~d~~~~~~ 270 (702)
.-+.++|++.|.. ||.|..|| |.+|+.. .. ..+.++ |+..|..+.|++... .||+|+.+
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~-~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~------ 138 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPA-SIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD------ 138 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecch-hhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC------
Confidence 3568999998876 88899999 8899977 32 233333 444599999999865 99999999
Q ss_pred CCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeec
Q 005315 271 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 349 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~ 349 (702)
|.|.|||+..-+.-.++... ..+..+. +++|+.+....||+++ +|.+.|||++..+.+-+...+
T Consensus 139 ----geI~iWDlnn~~tP~~~~~~---------~~~~eI~--~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~ 203 (1049)
T KOG0307|consen 139 ----GEILIWDLNKPETPFTPGSQ---------APPSEIK--CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT 203 (1049)
T ss_pred ----CcEEEeccCCcCCCCCCCCC---------CCcccce--EeccchhhhHHhhccCCCCCceeccccCCCcccccccC
Confidence 99999998664433222111 0111111 7888774456788888 889999999976555333333
Q ss_pred cC--CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccc
Q 005315 350 VE--NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 350 ~~--~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
.. .+..++|+|++.. .|++++++..
T Consensus 204 ~~~~~~S~l~WhP~~aT------------------------------------------------ql~~As~dd~----- 230 (1049)
T KOG0307|consen 204 PGRMHCSVLAWHPDHAT------------------------------------------------QLLVASGDDS----- 230 (1049)
T ss_pred CCccceeeeeeCCCCce------------------------------------------------eeeeecCCCC-----
Confidence 22 2456666666422 1222222211
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--Cc
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQ 504 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~ 504 (702)
...+.+|+++....|... +.+|...|.++.|++.+ +++++++.|+ .|..|+.+++. .+..+.. ..
T Consensus 231 -~PviqlWDlR~assP~k~--~~~H~~GilslsWc~~D~~lllSsgkD~---~ii~wN~~tgE------vl~~~p~~~nW 298 (1049)
T KOG0307|consen 231 -APVIQLWDLRFASSPLKI--LEGHQRGILSLSWCPQDPRLLLSSGKDN---RIICWNPNTGE------VLGELPAQGNW 298 (1049)
T ss_pred -CceeEeecccccCCchhh--hcccccceeeeccCCCCchhhhcccCCC---CeeEecCCCce------EeeecCCCCcc
Confidence 112678888776666533 46899999999999966 6777777788 89999998765 6777764 46
Q ss_pred eeEEEEccCCC-EEEEEeccCCCceEEEEECCCcc
Q 005315 505 ANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDELE 538 (702)
Q Consensus 505 v~~~~~spdg~-~l~~~~~~~~dg~v~i~d~~~~~ 538 (702)
+..+.|+|..- .+++++. +|.|.||.+.++.
T Consensus 299 ~fdv~w~pr~P~~~A~asf---dgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASF---DGKISIYSLQGTD 330 (1049)
T ss_pred eeeeeecCCCcchhhhhee---ccceeeeeeecCC
Confidence 89999999876 6666777 9999999998543
No 194
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.5e-13 Score=146.65 Aligned_cols=242 Identities=17% Similarity=0.164 Sum_probs=145.4
Q ss_pred eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCC
Q 005315 226 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 305 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~ 305 (702)
+.+||..+........+...+.++.|||||++|++.+... +...|++||+.+|+....... ....
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~-------~~~~l~~~dl~~g~~~~l~~~-~g~~------- 250 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER-------GRSAIYVQDLATGQRELVASF-RGIN------- 250 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC-------CCcEEEEEECCCCCEEEeccC-CCCc-------
Confidence 6788887332232332334589999999999999887541 125799999988875432221 1111
Q ss_pred CCCcccceEEEcCCCCcEEEEec--CC--eEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEE
Q 005315 306 VAGVSWPVFRWGGGKDKYFAKLG--KN--MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 381 (702)
Q Consensus 306 ~~~~~w~~~~~s~~dg~~la~~~--d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 381 (702)
. .++||| ||+.|+... ++ .|.+|++.++.... ...+......++|+|+|+.|++... ..+...|
T Consensus 251 -----~-~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd----~~g~~~i 318 (433)
T PRK04922 251 -----G-APSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSD----RGGRPQI 318 (433)
T ss_pred -----c-CceECC-CCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEEC----CCCCceE
Confidence 0 579999 999876543 33 68999988765432 1122222356778888887776211 1222334
Q ss_pred EEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEE
Q 005315 382 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 461 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 461 (702)
+.++.... ....+.. +......++|
T Consensus 319 y~~dl~~g-----------------------------------------------------~~~~lt~--~g~~~~~~~~ 343 (433)
T PRK04922 319 YRVAASGG-----------------------------------------------------SAERLTF--QGNYNARASV 343 (433)
T ss_pred EEEECCCC-----------------------------------------------------CeEEeec--CCCCccCEEE
Confidence 43332211 1111111 1223446899
Q ss_pred eeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee
Q 005315 462 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 541 (702)
Q Consensus 462 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~ 541 (702)
||+|++|++.+.++....|.+|++.++.. ..+. .+.....+.|+|||++|+..+.....+.|.++++.......
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~ 417 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSV----RTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQR 417 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCCe----EECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 99999999887654434789999865431 1221 22234568999999998887653224578888887543332
Q ss_pred e-cccCceeeeEECC
Q 005315 542 T-AEHFMATDVEWDP 555 (702)
Q Consensus 542 ~-~~~~~i~~~~~sp 555 (702)
. .+.+.+..++|+|
T Consensus 418 l~~~~g~~~~p~wsp 432 (433)
T PRK04922 418 LVSADGEVREPAWSP 432 (433)
T ss_pred cccCCCCCCCCccCC
Confidence 2 3346678889987
No 195
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=1.1e-13 Score=134.53 Aligned_cols=289 Identities=15% Similarity=0.233 Sum_probs=179.1
Q ss_pred eEEECCCCcEEEEEeCCc------eEEeecCcCcceeeeecCC----C-eeEEEecCC-------CCEEEEEcCCCCCCC
Q 005315 208 FVQWSPLGTYLATVHRQG------AAVWGGANTFNRLMRYAHP----Q-VKLIDFSPG-------EKYLVTYSSHEPSNP 269 (702)
Q Consensus 208 ~v~~Spdg~~lat~~~~~------i~iw~~~~~~~~~~~~~~~----~-v~~i~fSpd-------g~~l~t~s~d~~~~~ 269 (702)
-+..-|+..+|+++.... +.||+-. ..-.-.||. . ..|+.|-.. |+|+|.|..+
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~---e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmd----- 201 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEE---EENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMD----- 201 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCC---CcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccC-----
Confidence 345567666777665432 3455543 222222333 2 356666432 5799999999
Q ss_pred cCCCccEEEEEEccCCcE---Eeec-------c---CCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEE
Q 005315 270 RDANRVVINIFDVRTGKV---MRDF-------K---GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVY 335 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~---~~~~-------~---~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~ 335 (702)
..|.|||+.-... ...+ . +.......+++..+. .+.|+..-...||+++ |.+|.+|
T Consensus 202 -----p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl-----~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 202 -----PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVL-----ALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred -----ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHH-----HHHhccccceeEEecCCCceEEEE
Confidence 7899999732110 0000 0 000000001111122 3445441345889999 9999999
Q ss_pred ecCCcccccceeeccCCeeEEEeCCCCC-eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCE-
Q 005315 336 ETESFTLIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY- 413 (702)
Q Consensus 336 d~~~~~~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~- 413 (702)
|+.++++......|...|+++.|+|... +|++ |+.++++.+.....++...... -+....-++.|.|....
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLs-----Gs~D~~V~l~D~R~~~~s~~~w--k~~g~VEkv~w~~~se~~ 344 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLS-----GSYDGTVALKDCRDPSNSGKEW--KFDGEVEKVAWDPHSENS 344 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEe-----ccccceEEeeeccCccccCceE--EeccceEEEEecCCCcee
Confidence 9999998877777788899999999854 5555 7778877766655433221111 13344456789987764
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCcC
Q 005315 414 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAG 492 (702)
Q Consensus 414 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~ 492 (702)
+++++++++ ++-|+++..+.++ .++.+|.+.|.++++++.- ..+++++.++ .|++|++......
T Consensus 345 f~~~tddG~---------v~~~D~R~~~~~v--wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~---~Vklw~~~~~~~~- 409 (463)
T KOG0270|consen 345 FFVSTDDGT---------VYYFDIRNPGKPV--WTLKAHDDEISGLSVNIQTPGLLSTASTDK---VVKLWKFDVDSPK- 409 (463)
T ss_pred EEEecCCce---------EEeeecCCCCCce--eEEEeccCCcceEEecCCCCcceeeccccc---eEEEEeecCCCCc-
Confidence 445556665 7888888777554 5677899999999999854 4566777788 9999999654321
Q ss_pred ceEEEEEcCCCceeEEEEccCCCE-EEEEeccCCCceEEEEECCCccee
Q 005315 493 RVSKLTTLKGKQANALFWSPSGRF-IVLAGLKGFNGQLEFYNVDELETM 540 (702)
Q Consensus 493 ~~~~~~~~~~~~v~~~~~spdg~~-l~~~~~~~~dg~v~i~d~~~~~~~ 540 (702)
....+.+.-+...|+++.|+-.+ +++++. .+.+++||+.+...+
T Consensus 410 -~v~~~~~~~~rl~c~~~~~~~a~~la~GG~---k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 410 -SVKEHSFKLGRLHCFALDPDVAFTLAFGGE---KAVLRVWDIFTNSPV 454 (463)
T ss_pred -ccccccccccceeecccCCCcceEEEecCc---cceEEEeecccChhH
Confidence 12233333334667777887655 455554 678999999865443
No 196
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.61 E-value=2.3e-14 Score=136.37 Aligned_cols=196 Identities=16% Similarity=0.342 Sum_probs=136.8
Q ss_pred eeeeeeecccccceeEEccCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC-CcEE
Q 005315 391 ELRQKNLFSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRF 468 (702)
Q Consensus 391 ~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l 468 (702)
++...+.+......+.|||--. .|+++... .++.+|......-.+....+.+|...|..++|||. ...|
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~---------~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vf 273 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCV---------KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVF 273 (440)
T ss_pred ceEEecccCccceeeecccccccccccCccc---------cceEeeeeccCceeecCccccccccchhhhccCCccCceE
Confidence 4444455556667788998222 23332222 23688888776555666677789999999999995 5688
Q ss_pred EEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCc---ceee--ec
Q 005315 469 AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL---ETMA--TA 543 (702)
Q Consensus 469 ~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~---~~~~--~~ 543 (702)
++++.|+ .|+|||++.+... ......-++..|+.|.|+-+-.+|++|+. ||++.|||++.. +.++ +.
T Consensus 274 aScS~Dg---sIrIWDiRs~~~~--~~~~~kAh~sDVNVISWnr~~~lLasG~D---dGt~~iwDLR~~~~~~pVA~fk~ 345 (440)
T KOG0302|consen 274 ASCSCDG---SIRIWDIRSGPKK--AAVSTKAHNSDVNVISWNRREPLLASGGD---DGTLSIWDLRQFKSGQPVATFKY 345 (440)
T ss_pred EeeecCc---eEEEEEecCCCcc--ceeEeeccCCceeeEEccCCcceeeecCC---CceEEEEEhhhccCCCcceeEEe
Confidence 9999999 9999999876432 11222344557999999999889999987 999999999853 3333 46
Q ss_pred ccCceeeeEECCCCC-EEEEEEeecccccccEEEEEeccc--------------------eeeeec--cccEeeEEEeeC
Q 005315 544 EHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGK--------------------LLYRTL--KDHFFQFLWRPR 600 (702)
Q Consensus 544 ~~~~i~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~--------------------~l~~~~--~~~i~~~~w~p~ 600 (702)
|..+|+++.|+|... .|++++. |+.+.|||+.-. +++ .| ...+..+.|+++
T Consensus 346 Hk~pItsieW~p~e~s~iaasg~-----D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~Q 419 (440)
T KOG0302|consen 346 HKAPITSIEWHPHEDSVIAASGE-----DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQ 419 (440)
T ss_pred ccCCeeEEEeccccCceEEeccC-----CCcEEEEEeeccCChhhhccccccchhcCCceeEE-EecchhHhhhheeccC
Confidence 789999999999765 4555556 999999998411 111 12 245777888887
Q ss_pred CC-CCCChhh
Q 005315 601 PP-SFLTPEK 609 (702)
Q Consensus 601 ~~-~l~s~~~ 609 (702)
-+ +|++.+.
T Consensus 420 iPG~lvsTa~ 429 (440)
T KOG0302|consen 420 IPGLLVSTAI 429 (440)
T ss_pred CCCeEEEecc
Confidence 65 4444443
No 197
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.61 E-value=9.5e-14 Score=132.21 Aligned_cols=203 Identities=15% Similarity=0.234 Sum_probs=145.3
Q ss_pred CeeEEEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccC----------------CcEEeeccCCCcccccCCCCCC
Q 005315 245 QVKLIDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRT----------------GKVMRDFKGSADEFAVGGTGGV 306 (702)
Q Consensus 245 ~v~~i~fSpd--g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~----------------g~~~~~~~~~~~~~~~~~~~~~ 306 (702)
.++.+.-++- ..+.++.+.. |.|.||++.. .+++.++.+|...-
T Consensus 153 ~~NRvr~~~~~~~~~~aswse~----------G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EG-------- 214 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWSEN----------GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEG-------- 214 (440)
T ss_pred ccceeeecccCCcceeeeeccc----------CcEEEEEchhhhhhhcCccccccccccCceEEecccCccc--------
Confidence 3555655554 3566666766 8899999732 23456666665432
Q ss_pred CCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccc---ceeeccCCeeEEEeCCCC-CeEEEEeecCCCCCCCcEE
Q 005315 307 AGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID---KKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARV 381 (702)
Q Consensus 307 ~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~---~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i 381 (702)
+ .+.|||-....|+++. -+.|++|...++.... .+..|...|.+++|||.. ..+++ |+.|++++|
T Consensus 215 ----y-~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaS-----cS~DgsIrI 284 (440)
T KOG0302|consen 215 ----Y-GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFAS-----CSCDGSIRI 284 (440)
T ss_pred ----e-eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEe-----eecCceEEE
Confidence 2 6889983222466666 7899999988865332 223477789999999985 45666 889999998
Q ss_pred EEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEE
Q 005315 382 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 461 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 461 (702)
|.......+..-..+.+....-.+.|+..-.+|+++.++++ +.||+|+..........+.-|..+|+++.|
T Consensus 285 WDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt---------~~iwDLR~~~~~~pVA~fk~Hk~pItsieW 355 (440)
T KOG0302|consen 285 WDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGT---------LSIWDLRQFKSGQPVATFKYHKAPITSIEW 355 (440)
T ss_pred EEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCce---------EEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence 88877654433333556666666799998889999999988 899999975444344556679999999999
Q ss_pred eeC-CcEEEEEEcCCCCCeEEEEEeec
Q 005315 462 EPK-GHRFAVIHGDSPRPDISFYSMRT 487 (702)
Q Consensus 462 sp~-g~~l~~~~~d~~~~~v~i~d~~~ 487 (702)
+|. ...|++++.|. +|.|||+..
T Consensus 356 ~p~e~s~iaasg~D~---QitiWDlsv 379 (440)
T KOG0302|consen 356 HPHEDSVIAASGEDN---QITIWDLSV 379 (440)
T ss_pred ccccCceEEeccCCC---cEEEEEeec
Confidence 994 55677777777 999999963
No 198
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.60 E-value=6.6e-12 Score=123.15 Aligned_cols=373 Identities=16% Similarity=0.216 Sum_probs=211.2
Q ss_pred EecCCCCCCCcccccCCCcccceEEECCCCcEEEEE-----e-CCc--eEEeecCcCcc--eeeeecCCCeeEEEecCCC
Q 005315 186 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATV-----H-RQG--AAVWGGANTFN--RLMRYAHPQVKLIDFSPGE 255 (702)
Q Consensus 186 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~-----~-~~~--i~iw~~~~~~~--~~~~~~~~~v~~i~fSpdg 255 (702)
+|...........++.|-+-|+...|||+|+.+|+. + .+. +.+.+.+ .++ ++.-|+..--.-.-|+|||
T Consensus 61 lWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e-~Ge~kRiTyfGr~fT~VaG~~~dg 139 (668)
T COG4946 61 LWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSE-DGEAKRITYFGRRFTRVAGWIPDG 139 (668)
T ss_pred HHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCC-CCcEEEEEEeccccceeeccCCCC
Confidence 676644444456778889999999999999999983 1 222 5566666 333 4444544445566799999
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEc--------------------cCCcEE--------e---eccCCCcccc-cCCC
Q 005315 256 KYLVTYSSHEPSNPRDANRVVINIFDV--------------------RTGKVM--------R---DFKGSADEFA-VGGT 303 (702)
Q Consensus 256 ~~l~t~s~d~~~~~~~~~~~~i~vwd~--------------------~~g~~~--------~---~~~~~~~~~~-~~~~ 303 (702)
..|++.....|.... -.+|.+ ..|..+ . .+++...... .+..
T Consensus 140 ~iiV~TD~~tPF~q~------~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d 213 (668)
T COG4946 140 EIIVSTDFHTPFSQW------TELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSD 213 (668)
T ss_pred CEEEEeccCCCcccc------eeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEec
Confidence 999987765443210 001111 011000 0 0000000000 0000
Q ss_pred ---------CCCCCcccceEEEcCCCCcEEEEecCCeEEEEecC-CcccccceeeccCCeeEEEeCCCCCeEEEEeecCC
Q 005315 304 ---------GGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE-SFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELG 373 (702)
Q Consensus 304 ---------~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~ 373 (702)
.....++||.+ -. +.-|+.+--+|.=.+|.+. .|+-+.+. .....-..-..+.||+.|++.
T Consensus 214 ~g~tFeK~vdl~~~vS~PmI--V~-~RvYFlsD~eG~GnlYSvdldGkDlrrH-TnFtdYY~R~~nsDGkrIvFq----- 284 (668)
T COG4946 214 GGKTFEKFVDLDGNVSSPMI--VG-ERVYFLSDHEGVGNLYSVDLDGKDLRRH-TNFTDYYPRNANSDGKRIVFQ----- 284 (668)
T ss_pred CCcceeeeeecCCCcCCceE--Ec-ceEEEEecccCccceEEeccCCchhhhc-CCchhccccccCCCCcEEEEe-----
Confidence 00111223322 11 1123333335555555543 22222211 111111222345678888872
Q ss_pred CCCCCcEEEEEecCCcce--ee-------eeeecc-ccccee--EEcc-CCCEEEEEEcccccccccccccEEEEEEecC
Q 005315 374 GGNQPARVSLVQIPSKEE--LR-------QKNLFS-VSDCKM--YWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKER 440 (702)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~--~~-------~~~~~~-~~~~~~--~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 440 (702)
..+-||+|+..+... +. ...... +....+ .+++ +|.++++.+.. +.|.++..
T Consensus 285 ---~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG------------kaFi~~~~ 349 (668)
T COG4946 285 ---NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG------------KAFIMRPW 349 (668)
T ss_pred ---cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC------------cEEEECCC
Confidence 123477777654321 10 000000 001111 1332 56676665543 34444443
Q ss_pred CcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEE
Q 005315 441 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIV 518 (702)
Q Consensus 441 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~ 518 (702)
.... +.+ +|.+.|.-..+.-+++-++.+..|+. .+-||+.+++. +..+. -+.|.++..+|+|++++
T Consensus 350 ~~~~--iqv-~~~~~VrY~r~~~~~e~~vigt~dgD--~l~iyd~~~~e-------~kr~e~~lg~I~av~vs~dGK~~v 417 (668)
T COG4946 350 DGYS--IQV-GKKGGVRYRRIQVDPEGDVIGTNDGD--KLGIYDKDGGE-------VKRIEKDLGNIEAVKVSPDGKKVV 417 (668)
T ss_pred CCee--EEc-CCCCceEEEEEccCCcceEEeccCCc--eEEEEecCCce-------EEEeeCCccceEEEEEcCCCcEEE
Confidence 3332 344 56777888888888888999988884 79999997653 33333 34689999999999999
Q ss_pred EEeccCCCceEEEEECCCccee--eecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee--ccccEee
Q 005315 519 LAGLKGFNGQLEFYNVDELETM--ATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT--LKDHFFQ 594 (702)
Q Consensus 519 ~~~~~~~dg~v~i~d~~~~~~~--~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~--~~~~i~~ 594 (702)
++.. ...|.++|++++... .....+.|+.+.|+|++++||.+--+. -.-..|+++|..|..++.. ....-++
T Consensus 418 vaNd---r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g-y~tq~Iklydm~~~Kiy~vTT~ta~Dfs 493 (668)
T COG4946 418 VAND---RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG-YYTQSIKLYDMDGGKIYDVTTPTAYDFS 493 (668)
T ss_pred EEcC---ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcc-eeeeeEEEEecCCCeEEEecCCcccccC
Confidence 9987 889999999987654 345668899999999999999986520 0135889999998766654 3345556
Q ss_pred EEEeeCCCCCC
Q 005315 595 FLWRPRPPSFL 605 (702)
Q Consensus 595 ~~w~p~~~~l~ 605 (702)
.+|.|++++|.
T Consensus 494 PaFD~d~ryLY 504 (668)
T COG4946 494 PAFDPDGRYLY 504 (668)
T ss_pred cccCCCCcEEE
Confidence 77888887653
No 199
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.2e-12 Score=138.36 Aligned_cols=252 Identities=12% Similarity=0.078 Sum_probs=148.2
Q ss_pred cEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE--EEEec--C--CeEEEEecCCcccccceee
Q 005315 275 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY--FAKLG--K--NMISVYETESFTLIDKKSL 348 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~--la~~~--d--~~i~v~d~~~~~~~~~~~~ 348 (702)
..|.+.|...+. .+.+........ ..+||| ||+. ++..+ + ..|.+.++.++....-. .
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~-------------sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~ 228 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSI-------------TPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-A 228 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcc-------------cceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEee-c
Confidence 578888875444 344443322221 459999 9975 33333 3 45777788766432211 1
Q ss_pred ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc--ceeeeee-ecccccceeEEccCCCEEEEEEccccccc
Q 005315 349 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKN-LFSVSDCKMYWQSSGDYLAVKVDRYTKTK 425 (702)
Q Consensus 349 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~-~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 425 (702)
.........|||||+.|++..... +.....+..+++... ....... ..........|+|||+.|++.++...
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~--g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g--- 303 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRY--GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG--- 303 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCC--CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC---
Confidence 222345689999999999853221 222233333454432 1111111 11122345689999999998775421
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCce
Q 005315 426 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQA 505 (702)
Q Consensus 426 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v 505 (702)
...+|.+...........+..+...+....|||||++|++.+.......|.+||+.++.. ..+.. ....+
T Consensus 304 -----~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~-~~~~~ 373 (428)
T PRK01029 304 -----RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTT-SPENK 373 (428)
T ss_pred -----CceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccC-CCCCc
Confidence 135666543211111233434455677899999999999987754445899999876542 12221 12356
Q ss_pred eEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-cccCceeeeEECCCC
Q 005315 506 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTG 557 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~~i~~~~~spdg 557 (702)
..+.|+|||+.|+..........|+++++.+++.... ...+.+...+|||-.
T Consensus 374 ~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 374 ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 7799999999988765432356799999987655433 233556788999854
No 200
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.59 E-value=2e-13 Score=138.37 Aligned_cols=286 Identities=11% Similarity=0.098 Sum_probs=183.5
Q ss_pred CCCCCceEEEEeCCceEEEecCCCC-CC----CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeee-
Q 005315 168 DEKARDQFVIRSGTDTEVLWNDARH-LK----PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR- 240 (702)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~w~~~~~-~~----~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~- 240 (702)
.++.+..+++...++.+.+++.... +. .......|...|..+.|-|-...|++++.|. +++||+. +...+..
T Consensus 60 ~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~s~l~G~~ 138 (720)
T KOG0321|consen 60 APNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-TSRLVGGR 138 (720)
T ss_pred CCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec-cceeecce
Confidence 4455666777777888888886311 11 1234568999999999999667888888888 8899999 5544433
Q ss_pred --ecCCC-eeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCcE-------EeeccCCCc------ccc----
Q 005315 241 --YAHPQ-VKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKV-------MRDFKGSAD------EFA---- 299 (702)
Q Consensus 241 --~~~~~-v~~i~fSpdg~-~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~-------~~~~~~~~~------~~~---- 299 (702)
++|.+ |.+++|.|... .+++|+.| +.|.|||++-... .+....|.. ...
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRD----------g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRD----------GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCC----------CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 45665 99999999875 67899999 9999999853320 011111111 000
Q ss_pred --cCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCccccc------ceee--c---cCCeeEEEeCCCCCe
Q 005315 300 --VGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLID------KKSL--K---VENVMDFSWSPTDPI 364 (702)
Q Consensus 300 --~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~------~~~~--~---~~~v~~~~~sp~~~~ 364 (702)
....+.+.+- . .+.+.. |+..||+++ |+.|+|||+....... .... + .-++.++.....|.+
T Consensus 209 k~kA~s~ti~ss-v-Tvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 209 KWKAASNTIFSS-V-TVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred ccccccCceeee-e-EEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 0001111110 0 245566 888999888 9999999998654321 1111 2 235778888888888
Q ss_pred EEEEeecCCCCCCCcEEEEEecCCcc--eeeeeeecccc--cceeEEccCCCEEEEEEcccccccccccccEEEEEEecC
Q 005315 365 ISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVS--DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 440 (702)
Q Consensus 365 la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~--~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 440 (702)
|.. .+.|+ .|+.|++.+.. ++......... ..+-..+|++.+|+.++.+.. ..+|.+...
T Consensus 286 L~A-----sCtD~--sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~---------ayiw~vs~~ 349 (720)
T KOG0321|consen 286 LFA-----SCTDN--SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ---------AYIWVVSSP 349 (720)
T ss_pred EEE-----EecCC--cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc---------eeeeeecCc
Confidence 876 33444 46677766543 22211111111 111135899999999998866 678888765
Q ss_pred CcceeEEEecCCCCceeEEEEeeC-CcEEEEEEcCCCCCeEEEEEeecc
Q 005315 441 DIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 441 ~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
..+. ..+.+|...|++++|.|. -.-+++++.|. .++||++..+
T Consensus 350 e~~~--~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~---~~kiW~l~~~ 393 (720)
T KOG0321|consen 350 EAPP--ALLLGHTREVTTVRWLPSATTPVATCSDDF---RVKIWRLSNG 393 (720)
T ss_pred cCCh--hhhhCcceEEEEEeeccccCCCceeeccCc---ceEEEeccCc
Confidence 4432 445689999999999883 34566668887 8999999543
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.4e-13 Score=130.93 Aligned_cols=197 Identities=21% Similarity=0.330 Sum_probs=135.3
Q ss_pred eEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcce
Q 005315 313 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 391 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 391 (702)
+++|++ +|..+++++ ||+++||+.+++..+-....|...|.++.|||||++|++ .+++ .++||..+. ...
T Consensus 149 ~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~las-----ig~d-~~~VW~~~~--g~~ 219 (398)
T KOG0771|consen 149 VVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLAS-----IGAD-SARVWSVNT--GAA 219 (398)
T ss_pred EEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEE-----ecCC-ceEEEEecc--Cch
Confidence 789999 999999999 999999999988877666667788999999999999999 5556 666665432 211
Q ss_pred eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC---c-E
Q 005315 392 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG---H-R 467 (702)
Q Consensus 392 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g---~-~ 467 (702)
+..+..+ ..+.....+.|+.++ . +
T Consensus 220 ~a~~t~~----------------------------------------------------~k~~~~~~cRF~~d~~~~~l~ 247 (398)
T KOG0771|consen 220 LARKTPF----------------------------------------------------SKDEMFSSCRFSVDNAQETLR 247 (398)
T ss_pred hhhcCCc----------------------------------------------------ccchhhhhceecccCCCceEE
Confidence 1111100 001122223333333 1 2
Q ss_pred EEEEEcCCCCCeEEEEEeecccCcCceEEEE-EcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee---e
Q 005315 468 FAVIHGDSPRPDISFYSMRTAQHAGRVSKLT-TLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA---T 542 (702)
Q Consensus 468 l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~-~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~---~ 542 (702)
+++....+ ..|..|++...... ...+.. .+. ...+++++.|++|+++++++. +|.|.|++..+.+.+. .
T Consensus 248 laa~~~~~--~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~---dGsVai~~~~~lq~~~~vk~ 321 (398)
T KOG0771|consen 248 LAASQFPG--GGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTM---DGSVAIYDAKSLQRLQYVKE 321 (398)
T ss_pred EEEecCCC--CceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEecc---CCcEEEEEeceeeeeEeehh
Confidence 22222222 25666665433221 111111 122 236899999999999999998 9999999999877664 4
Q ss_pred cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 543 AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 543 ~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
.|...|+.+.|+||.+++++.+. ++...+..+..
T Consensus 322 aH~~~VT~ltF~Pdsr~~~svSs-----~~~~~v~~l~v 355 (398)
T KOG0771|consen 322 AHLGFVTGLTFSPDSRYLASVSS-----DNEAAVTKLAV 355 (398)
T ss_pred hheeeeeeEEEcCCcCccccccc-----CCceeEEEEee
Confidence 77789999999999999999888 89999888764
No 202
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.7e-12 Score=123.11 Aligned_cols=307 Identities=12% Similarity=0.165 Sum_probs=176.2
Q ss_pred cccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee---cCCCeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEE
Q 005315 204 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY---AHPQVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVIN 278 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~---~~~~v~~i~fSpdg-~~l~t~s~d~~~~~~~~~~~~i~ 278 (702)
-.+..++|++.-..+|++..|. |++|+-. . .....+ ...+|.|++|-|.+ +-|+.+... -|.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ks-s-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-----------gIc 165 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKS-S-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-----------GIC 165 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccC-C-CCCceecchhhcceeEEEeccCCcceeeeeecc-----------eeE
Confidence 3567889999666677777776 7899887 3 333333 23469999999975 567777766 488
Q ss_pred EEEccC-C---cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCC
Q 005315 279 IFDVRT-G---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVEN 352 (702)
Q Consensus 279 vwd~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~ 352 (702)
||.... + ..++-...+...+... .+..- ...++|.+ ||..+++++ +..|.|||..++..+.-.....++
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~--pgh~p--Vtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg 240 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQD--PGHNP--VTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG 240 (445)
T ss_pred EEEcCcccccccccccccccchhheeC--CCCce--eeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCc
Confidence 998632 1 1122112222221100 00111 12789999 999999998 899999999998877655566778
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEe-cCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ-IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 431 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 431 (702)
+.-+.|||||.+|.. +.-|...++|.-. .-+.+ + ..+.......-.|+|.|++|++......
T Consensus 241 ~slLkwSPdgd~lfa-----At~davfrlw~e~q~wt~e--r-w~lgsgrvqtacWspcGsfLLf~~sgsp--------- 303 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFA-----ATCDAVFRLWQENQSWTKE--R-WILGSGRVQTACWSPCGSFLLFACSGSP--------- 303 (445)
T ss_pred eeeEEEcCCCCEEEE-----ecccceeeeehhcccceec--c-eeccCCceeeeeecCCCCEEEEEEcCCc---------
Confidence 999999999999887 5567777766221 11111 0 1111223333468888888877665433
Q ss_pred EEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEE-EEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEE
Q 005315 432 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA-VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 510 (702)
Q Consensus 432 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~-~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 510 (702)
.+|.+. |+.....+. .++... .+-+-|+..-... .-.++-.+.+.+++|
T Consensus 304 -~lysl~----------------------f~~~~~~~~~~~~~k~---~lliaDL~e~ti~----ag~~l~cgeaq~law 353 (445)
T KOG2139|consen 304 -RLYSLT----------------------FDGEDSVFLRPQSIKR---VLLIADLQEVTIC----AGQRLCCGEAQCLAW 353 (445)
T ss_pred -eEEEEe----------------------ecCCCccccCccccee---eeeeccchhhhhh----cCcccccCccceeeE
Confidence 344433 221110000 011001 2333444211100 012233557889999
Q ss_pred ccCCCEEEEEeccC-----CCceEEEEECCCcceeee-----cccCceeeeEECC---CCCEEEEEEeecccccccEEEE
Q 005315 511 SPSGRFIVLAGLKG-----FNGQLEFYNVDELETMAT-----AEHFMATDVEWDP---TGRYVATAVTSVHEMENGFNIW 577 (702)
Q Consensus 511 spdg~~l~~~~~~~-----~dg~v~i~d~~~~~~~~~-----~~~~~i~~~~~sp---dg~~l~t~s~~~~~~d~~v~iw 577 (702)
.|.|.+|++.-.+. ..+.|.+||....-.+.. ........++|+| +|++|..+-+ .|.+.-|
T Consensus 354 DpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs-----TGriq~y 428 (445)
T KOG2139|consen 354 DPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWS-----TGRIQRY 428 (445)
T ss_pred CCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEec-----cCceEee
Confidence 99999999987643 123466677664322211 1112233455555 5666666655 5777766
Q ss_pred Eec
Q 005315 578 SFN 580 (702)
Q Consensus 578 ~~~ 580 (702)
.+.
T Consensus 429 pl~ 431 (445)
T KOG2139|consen 429 PLT 431 (445)
T ss_pred eeE
Confidence 654
No 203
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.7e-12 Score=138.26 Aligned_cols=247 Identities=14% Similarity=0.202 Sum_probs=153.0
Q ss_pred eEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccC
Q 005315 331 MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 410 (702)
Q Consensus 331 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 410 (702)
.|.++|....... ........+....|||||+.|++... .++...||++++.+.+...... .......+.|+|+
T Consensus 199 ~l~i~d~dG~~~~-~l~~~~~~~~~p~wSPDG~~La~~s~----~~g~~~L~~~dl~tg~~~~lt~-~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLLRSPEPLMSPAWSPDGRKLAYVSF----ENRKAEIFVQDIYTQVREKVTS-FPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCCce-EeecCCCcccCceECCCCCEEEEEEe----cCCCcEEEEEECCCCCeEEecC-CCCCcCCeeECCC
Confidence 5666676543321 11122345778999999999998432 3445689999987655322221 1222335689999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccC
Q 005315 411 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 490 (702)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 490 (702)
|+.|++...... ...||.++..+... ..+..+.......+|+|||+++++.+..+....|+++++.++..
T Consensus 273 G~~La~~~~~~g--------~~~Iy~~dl~tg~~--~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 273 GKKLALVLSKDG--------QPEIYVVDIATKAL--TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred CCEEEEEEeCCC--------CeEEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999987654321 24566655443332 23444455667899999999999887654434677777754431
Q ss_pred cCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccc
Q 005315 491 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEM 570 (702)
Q Consensus 491 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~ 570 (702)
..+. ..+......+|||||++|+..+.......|.++|+.+++..............|+|||++|+..+.. ..
T Consensus 343 ----~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~--~g 415 (448)
T PRK04792 343 ----SRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY--QG 415 (448)
T ss_pred ----EEEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEec--CC
Confidence 2222 3333345679999999998876522123567788887654332222233456899999999888763 01
Q ss_pred cccEEEEEeccceeeee--ccccEeeEEEeeC
Q 005315 571 ENGFNIWSFNGKLLYRT--LKDHFFQFLWRPR 600 (702)
Q Consensus 571 d~~v~iw~~~g~~l~~~--~~~~i~~~~w~p~ 600 (702)
...+++++.+|...... +.+.+...+|+|.
T Consensus 416 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 416 KQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 23467778888766555 3356778899884
No 204
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.8e-12 Score=138.11 Aligned_cols=242 Identities=13% Similarity=0.056 Sum_probs=146.8
Q ss_pred eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCC
Q 005315 226 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 305 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~ 305 (702)
+.++|..+...+........+.+..|||||++|+..+... +...|++||+.+|+............
T Consensus 200 l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~-------g~~~L~~~dl~tg~~~~lt~~~g~~~------- 265 (448)
T PRK04792 200 LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN-------RKAEIFVQDIYTQVREKVTSFPGING------- 265 (448)
T ss_pred EEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC-------CCcEEEEEECCCCCeEEecCCCCCcC-------
Confidence 4566777333333333334588999999999999876541 12579999998887533222111111
Q ss_pred CCCcccceEEEcCCCCcEEEEec--CC--eEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEE
Q 005315 306 VAGVSWPVFRWGGGKDKYFAKLG--KN--MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 381 (702)
Q Consensus 306 ~~~~~w~~~~~s~~dg~~la~~~--d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 381 (702)
.+.||| ||+.|+... ++ .|.++++.++.... ...+.......+|+|+|+.|++.. ..++...|
T Consensus 266 -------~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s----~~~g~~~I 332 (448)
T PRK04792 266 -------APRFSP-DGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTS----ERGGKPQI 332 (448)
T ss_pred -------CeeECC-CCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEE----CCCCCceE
Confidence 469999 999887654 45 47777887665432 112223356789999999988742 23455688
Q ss_pred EEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEE
Q 005315 382 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 461 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 461 (702)
|.++..+.+.... ...........|+|+|++|++...... ...||.++..+.....+. . .....+.+|
T Consensus 333 y~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~~g--------~~~I~~~dl~~g~~~~lt--~-~~~d~~ps~ 400 (448)
T PRK04792 333 YRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRTNG--------KFNIARQDLETGAMQVLT--S-TRLDESPSV 400 (448)
T ss_pred EEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEecCC--------ceEEEEEECCCCCeEEcc--C-CCCCCCceE
Confidence 9888876553221 111122234589999999988765421 245666654433332222 1 122335689
Q ss_pred eeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc--CCCceeEEEEccC
Q 005315 462 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPS 513 (702)
Q Consensus 462 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~~~~spd 513 (702)
+|+|+.+++.+.++....+.+++.... ....+ ....+..++|||-
T Consensus 401 spdG~~I~~~~~~~g~~~l~~~~~~G~-------~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 401 APNGTMVIYSTTYQGKQVLAAVSIDGR-------FKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCCC-------ceEECcCCCCCcCCCccCCC
Confidence 999999999887654445777776322 22223 2345678889873
No 205
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.7e-12 Score=134.60 Aligned_cols=248 Identities=10% Similarity=0.044 Sum_probs=143.0
Q ss_pred eEEeecCcCcceeeeecCCCeeEEEecCCCCE--EEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCC
Q 005315 226 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKY--LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGT 303 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~--l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~ 303 (702)
+.+.|.++...+..+.....+.+..|||||+. ++..+... +...|++.++.+|+..+.........
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~-------g~~~I~~~~l~~g~~~~lt~~~g~~~----- 234 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL-------GVPKIFLGSLENPAGKKILALQGNQL----- 234 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC-------CCceEEEEECCCCCceEeecCCCCcc-----
Confidence 45667663333333333334778999999986 33334331 12578999998776443332222222
Q ss_pred CCCCCcccceEEEcCCCCcEEEEec--CC--eE--EEEecCCcc--cccceeec-cCCeeEEEeCCCCCeEEEEeecCCC
Q 005315 304 GGVAGVSWPVFRWGGGKDKYFAKLG--KN--MI--SVYETESFT--LIDKKSLK-VENVMDFSWSPTDPIISLFVPELGG 374 (702)
Q Consensus 304 ~~~~~~~w~~~~~s~~dg~~la~~~--d~--~i--~v~d~~~~~--~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~~~ 374 (702)
..+||| ||+.||... ++ .+ .+|++..+. ........ .......+|||||+.|++.. .
T Consensus 235 ---------~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s----~ 300 (428)
T PRK01029 235 ---------MPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS----N 300 (428)
T ss_pred ---------ceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE----C
Confidence 469999 999998766 23 33 346665431 11111111 12346789999999998742 1
Q ss_pred CCCCcEEEEEecCC-cceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005315 375 GNQPARVSLVQIPS-KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 453 (702)
Q Consensus 375 ~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 453 (702)
.++...||++++.. ..................|+|+|++|++...... ...+.+|++... ... .+....
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g------~~~I~v~dl~~g--~~~--~Lt~~~ 370 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG------VRQICVYDLATG--RDY--QLTTSP 370 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC------CcEEEEEECCCC--CeE--EccCCC
Confidence 34556788887643 2222222222223445789999999998765422 122445554432 222 232223
Q ss_pred CceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCC
Q 005315 454 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSG 514 (702)
Q Consensus 454 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 514 (702)
..+.+..|+|||+.|++.+.......|.++++.++.. ..+.. ....+...+|||-.
T Consensus 371 ~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~----~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 371 ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT----RKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeec-CCCcccCceecCCC
Confidence 4667899999999999877654444788888865432 23332 23346778999864
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2.1e-13 Score=132.30 Aligned_cols=193 Identities=17% Similarity=0.283 Sum_probs=135.4
Q ss_pred ceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005315 207 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~ 283 (702)
.+++|+++|+.||+++.|| ++||+++ +...+... +|..|.++.|||||++|++.+.+ ..+||++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~P-s~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-----------~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWP-SMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-----------SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecC-cchhhhhhHhhcCccccceeCCCCcEEEEecCC-----------ceEEEEec
Confidence 7899999999999999999 8899988 66665555 46679999999999999999998 58899999
Q ss_pred CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC---c-EEEEec--CCeEEEEecCCcc-----cccceeeccCC
Q 005315 284 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD---K-YFAKLG--KNMISVYETESFT-----LIDKKSLKVEN 352 (702)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg---~-~la~~~--d~~i~v~d~~~~~-----~~~~~~~~~~~ 352 (702)
+|..+........... +..++|+. |+ . ++|... .+.|..|++.... ...++......
T Consensus 216 ~g~~~a~~t~~~k~~~-----------~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 216 TGAALARKTPFSKDEM-----------FSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred cCchhhhcCCcccchh-----------hhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence 9977766653222211 22678888 77 2 333333 5566666654322 22233334457
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccE
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 432 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 432 (702)
|.+++.|++|+++|+ |+.++.+.|+ +..+.+
T Consensus 284 iSsl~VS~dGkf~Al-----GT~dGsVai~--~~~~lq------------------------------------------ 314 (398)
T KOG0771|consen 284 ISSLAVSDDGKFLAL-----GTMDGSVAIY--DAKSLQ------------------------------------------ 314 (398)
T ss_pred ceeEEEcCCCcEEEE-----eccCCcEEEE--Eeceee------------------------------------------
Confidence 899999999999998 6565554432 211110
Q ss_pred EEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEee
Q 005315 433 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 486 (702)
Q Consensus 433 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 486 (702)
.++ +.-..|...|+.+.|+|+.++++..+.+. ...+..+.
T Consensus 315 ~~~-----------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~---~~~v~~l~ 354 (398)
T KOG0771|consen 315 RLQ-----------YVKEAHLGFVTGLTFSPDSRYLASVSSDN---EAAVTKLA 354 (398)
T ss_pred eeE-----------eehhhheeeeeeEEEcCCcCcccccccCC---ceeEEEEe
Confidence 011 11236888999999999999999988877 66676663
No 207
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.53 E-value=4.9e-13 Score=121.52 Aligned_cols=302 Identities=15% Similarity=0.180 Sum_probs=180.7
Q ss_pred CCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec--C-CCeeEEEecCCCCEEEEEcCCCCCC
Q 005315 193 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--H-PQVKLIDFSPGEKYLVTYSSHEPSN 268 (702)
Q Consensus 193 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~-~~v~~i~fSpdg~~l~t~s~d~~~~ 268 (702)
..|..++.+|...|+|+.|-.+++ |.+|...| +.+|.+. +...+..+. + .-|+.+.--|+ ..|.+-+.|
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lq-t~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd---- 76 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQ-TERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRD---- 76 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEee-cCccchhhhhhccceeeceeecCC-cchhhcCCC----
Confidence 345556678999999999999886 78888888 7799999 665544443 2 23888888887 567888888
Q ss_pred CcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc----EEEEecCC--eEEEEecCCccc
Q 005315 269 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK----YFAKLGKN--MISVYETESFTL 342 (702)
Q Consensus 269 ~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~----~la~~~d~--~i~v~d~~~~~~ 342 (702)
..+.+|++.-+..+..-... ++.+.+.-++.++ .++ .+++-+.+ .+++-|......
T Consensus 77 ------~~L~lw~ia~s~~i~i~Si~-----------~nslgFCrfSl~~-~~k~~eqll~yp~rgsde~h~~D~g~~tq 138 (323)
T KOG0322|consen 77 ------PLLILWTIAYSAFISIHSIV-----------VNSLGFCRFSLVK-KPKNSEQLLEYPSRGSDETHKQDGGDTTQ 138 (323)
T ss_pred ------ceEEEEEccCcceEEEeeee-----------ccccccccceecc-CCCcchhheecCCcccchhhhhccCccce
Confidence 89999998665433221110 1111121233333 222 11211111 111111111000
Q ss_pred c----cceeeccCCeeEEEeCCC-CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEE
Q 005315 343 I----DKKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVK 417 (702)
Q Consensus 343 ~----~~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~ 417 (702)
+ .....+.+.+.+..|.-+ +.++... .+-.++.+.+|++.+...+-...
T Consensus 139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lll-----aGyEsghvv~wd~S~~~~~~~~~--------------------- 192 (323)
T KOG0322|consen 139 VQIADDSERSKLGSVMCQDKDHACGSTFLLL-----AGYESGHVVIWDLSTGDKIIQLP--------------------- 192 (323)
T ss_pred eEccCchhccccCceeeeeccccccceEEEE-----EeccCCeEEEEEccCCceeeccc---------------------
Confidence 0 001112233445443322 2222221 12333344444433321110000
Q ss_pred EcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEE
Q 005315 418 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKL 497 (702)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~ 497 (702)
..|. .......|..+|.++.+.+.-..=++++.+. .+..|.+....+.......
T Consensus 193 ---------------~~~k--------v~~~~ash~qpvlsldyas~~~rGisgga~d---kl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 193 ---------------QSSK--------VESPNASHKQPVLSLDYASSCDRGISGGADD---KLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred ---------------cccc--------cccchhhccCcceeeeechhhcCCcCCCccc---cceeeeeccccCcccccce
Confidence 0000 0012236788999999887544444444444 7888888654443333344
Q ss_pred EEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee--ecccCceeeeEECCCCCEEEEEEeecccccccEE
Q 005315 498 TTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFN 575 (702)
Q Consensus 498 ~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~ 575 (702)
.++....+..+..-||++.+|+++. |+.+++|..+++..++ +.|...|++++|+|+...+|.++. |..|.
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGW---D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaask-----D~rIS 318 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGW---DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK-----DARIS 318 (323)
T ss_pred EEecCCCccceEEccCCcEEeeccc---CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccC-----CceEE
Confidence 5555567899999999999999999 9999999999988876 477899999999999999999999 99999
Q ss_pred EEEe
Q 005315 576 IWSF 579 (702)
Q Consensus 576 iw~~ 579 (702)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9985
No 208
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.7e-12 Score=136.44 Aligned_cols=247 Identities=13% Similarity=0.179 Sum_probs=153.6
Q ss_pred eEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccC
Q 005315 331 MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 410 (702)
Q Consensus 331 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 410 (702)
.|.++|....... ....+...+....|||+|+.|++... .++...||++++.+.+...... .......+.|+|+
T Consensus 180 ~l~~~d~~g~~~~-~l~~~~~~~~~p~wSpDG~~la~~s~----~~~~~~l~~~~l~~g~~~~l~~-~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDGARAV-TLLQSREPILSPRWSPDGKRIAYVSF----EQKRPRIFVQNLDTGRREQITN-FEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCCCCce-EEecCCCceeeeeECCCCCEEEEEEc----CCCCCEEEEEECCCCCEEEccC-CCCCcCCeEECCC
Confidence 4667776644322 12223345788999999999987422 3345689999987664322111 1222334689999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccC
Q 005315 411 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 490 (702)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 490 (702)
|+.|++...... ...||.++..+... ..+..+........|+|+|+.+++.+...+...|+++++.++..
T Consensus 254 G~~la~~~~~~g--------~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 254 GSKLAFVLSKDG--------NPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCEEEEEEccCC--------CceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999987654321 13455554433332 23444555667789999999999887654444777777755431
Q ss_pred cCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccc
Q 005315 491 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEM 570 (702)
Q Consensus 491 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~ 570 (702)
..+. ..+.......|||+|++|+..........|.++|+.+++.....+........|+|||++|+.++.. ..
T Consensus 324 ----~~lt-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~--~g 396 (430)
T PRK00178 324 ----ERVT-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ--QG 396 (430)
T ss_pred ----EEee-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec--CC
Confidence 2222 2233345679999999998876522123688899987655433222233467999999999988862 01
Q ss_pred cccEEEEEeccceeeee--ccccEeeEEEeeC
Q 005315 571 ENGFNIWSFNGKLLYRT--LKDHFFQFLWRPR 600 (702)
Q Consensus 571 d~~v~iw~~~g~~l~~~--~~~~i~~~~w~p~ 600 (702)
...+.+++++|...... +.+.+...+|+|.
T Consensus 397 ~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 397 RGVLMLVSINGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 23466778877655433 3356778889875
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.52 E-value=6e-14 Score=146.04 Aligned_cols=278 Identities=13% Similarity=0.177 Sum_probs=187.3
Q ss_pred cccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005315 196 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDA 272 (702)
Q Consensus 196 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~ 272 (702)
+..+-+|...|+|+.|...|.|+++|+.+. ++||..+ +..++... +|. .++.++.+.+...+++++.|
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D-------- 253 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-TARCLASCRGHSGDITDLAVSSNNTMIAAASND-------- 253 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeecc-chhhhccCCCCccccchhccchhhhhhhhcccC--------
Confidence 334578999999999999999999999999 7799988 77777766 344 59999999999999999999
Q ss_pred CccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecC-Ccccccceee---
Q 005315 273 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE-SFTLIDKKSL--- 348 (702)
Q Consensus 273 ~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~-~~~~~~~~~~--- 348 (702)
..|++|.+.+|.++..+.+|.+.++ .++||| -- +++.||++.+||.. .-........
T Consensus 254 --~vIrvWrl~~~~pvsvLrghtgavt-------------aiafsP-~~---sss~dgt~~~wd~r~~~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 254 --KVIRVWRLPDGAPVSVLRGHTGAVT-------------AIAFSP-RA---SSSDDGTCRIWDARLEPRIYVPRPLKFT 314 (1113)
T ss_pred --ceEEEEecCCCchHHHHhcccccee-------------eeccCc-cc---cCCCCCceEeccccccccccCCCCCCcc
Confidence 9999999999999999999998875 899999 33 34449999999987 1110000000
Q ss_pred ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccc--cccc
Q 005315 349 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT--KTKK 426 (702)
Q Consensus 349 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~--~~~~ 426 (702)
...-+..+.+...+..+++ ++.++..+.|.+..-. |...+-.++....+.. ....
T Consensus 315 ~~~~~~s~~~~~~~~~f~T-----gs~d~ea~n~e~~~l~------------------~~~~~lif~t~ssd~~~~~~~a 371 (1113)
T KOG0644|consen 315 EKDLVDSILFENNGDRFLT-----GSRDGEARNHEFEQLA------------------WRSNLLIFVTRSSDLSSIVVTA 371 (1113)
T ss_pred cccceeeeecccccccccc-----ccCCcccccchhhHhh------------------hhccceEEEeccccccccceee
Confidence 0112556666666666666 6667766665544322 2222222222111100 0000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcCCCce
Q 005315 427 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQA 505 (702)
Q Consensus 427 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v 505 (702)
..+..+..|++..... ...+.+|...+..+.++|-..+++...+ || ...|||+-.+... .........+
T Consensus 372 r~~~~~~vwnl~~g~l---~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg---st~iwdi~eg~pi----k~y~~gh~kl 441 (1113)
T KOG0644|consen 372 RNDHRLCVWNLYTGQL---LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG---STIIWDIWEGIPI----KHYFIGHGKL 441 (1113)
T ss_pred eeeeEeeeeecccchh---hhhhcccccceeeeeecCCCcHhhhhccCCC---ceEeeecccCCcc----eeeeccccee
Confidence 0111134455443211 0123478899999999997777766554 77 8999999765421 2233333367
Q ss_pred eEEEEccCCCEEEEEeccCCCceEEEEECCCc
Q 005315 506 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 537 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~ 537 (702)
..-+||++|..+++... -|.++|.....+
T Consensus 442 ~d~kFSqdgts~~lsd~---hgql~i~g~gqs 470 (1113)
T KOG0644|consen 442 VDGKFSQDGTSIALSDD---HGQLYILGTGQS 470 (1113)
T ss_pred eccccCCCCceEecCCC---CCceEEeccCCC
Confidence 78899999999998876 789999877643
No 210
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=7.7e-12 Score=133.95 Aligned_cols=243 Identities=12% Similarity=0.060 Sum_probs=145.3
Q ss_pred eEEeecCcCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCC
Q 005315 226 AAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTG 304 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~-~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~ 304 (702)
+.++|.. +....... +...+.+..|||||++|+..+... ....|.+|++.+|+............
T Consensus 181 l~~~d~~-g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~-------~~~~l~~~~l~~g~~~~l~~~~g~~~------ 246 (430)
T PRK00178 181 LQRSDYD-GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ-------KRPRIFVQNLDTGRREQITNFEGLNG------ 246 (430)
T ss_pred EEEECCC-CCCceEEecCCCceeeeeECCCCCEEEEEEcCC-------CCCEEEEEECCCCCEEEccCCCCCcC------
Confidence 5577777 33322222 334589999999999999877541 12579999998887544322111111
Q ss_pred CCCCcccceEEEcCCCCcEEEEec--CC--eEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcE
Q 005315 305 GVAGVSWPVFRWGGGKDKYFAKLG--KN--MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 380 (702)
Q Consensus 305 ~~~~~~w~~~~~s~~dg~~la~~~--d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 380 (702)
.+.||| ||+.|+... ++ .|.+|++.++.... ...+........|+|+|+.|++.. ..++...
T Consensus 247 --------~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s----~~~g~~~ 312 (430)
T PRK00178 247 --------APAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTS----DRGGKPQ 312 (430)
T ss_pred --------CeEECC-CCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEE----CCCCCce
Confidence 469999 999887543 33 68888988765432 112222355689999999988742 1345568
Q ss_pred EEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEE
Q 005315 381 VSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 460 (702)
Q Consensus 381 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 460 (702)
|+.+++...+.... ...........|+|+|++|++...... ...|+.++..+.....+.- ........
T Consensus 313 iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~~~~~--------~~~l~~~dl~tg~~~~lt~---~~~~~~p~ 380 (430)
T PRK00178 313 IYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVHRQDG--------NFHVAAQDLQRGSVRILTD---TSLDESPS 380 (430)
T ss_pred EEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccCC--------ceEEEEEECCCCCEEEccC---CCCCCCce
Confidence 88888766553221 111122334579999999998765321 1234444433332222221 22334578
Q ss_pred EeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccC
Q 005315 461 WEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 513 (702)
Q Consensus 461 ~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spd 513 (702)
|+|+|+.+++.+.+++...|.++++..... ..+. ...+.+..++|||-
T Consensus 381 ~spdg~~i~~~~~~~g~~~l~~~~~~g~~~----~~l~-~~~g~~~~p~ws~~ 428 (430)
T PRK00178 381 VAPNGTMLIYATRQQGRGVLMLVSINGRVR----LPLP-TAQGEVREPSWSPY 428 (430)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCce----EECc-CCCCCcCCCccCCC
Confidence 999999999988765544677777632210 1111 23345677888873
No 211
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.50 E-value=9.6e-14 Score=144.52 Aligned_cols=271 Identities=14% Similarity=0.175 Sum_probs=182.8
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
|...|+|+.|...|.|+++|+.| ..++||...++.++.+..+|...++ .++.+. +.
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd----------~lvKiwS~et~~~lAs~rGhs~dit-------------dlavs~-~n 244 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDD----------RLVKIWSMETARCLASCRGHSGDIT-------------DLAVSS-NN 244 (1113)
T ss_pred hhhheeeeeeccccceEeecCcc----------ceeeeeeccchhhhccCCCCccccc-------------hhccch-hh
Confidence 34459999999999999999999 8999999999999999999988874 567777 77
Q ss_pred cEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecc-
Q 005315 322 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS- 399 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~- 399 (702)
.++|+++ |..|++|.++++..+.....|.+.|+.++|+|-- . .+.+++.++|.++......+....-+.
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----s-----ss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----S-----SSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----c-----CCCCCceEeccccccccccCCCCCCccc
Confidence 8888888 9999999999999998888999999999999964 3 568999999999843332111111011
Q ss_pred -cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC-cEEEEEEcCCCC
Q 005315 400 -VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPR 477 (702)
Q Consensus 400 -~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~ 477 (702)
.-.+.+.+..+|..+++++.+... ..|.+.. +..|...+.-+..+.+. .+.++.-.+.
T Consensus 316 ~~~~~s~~~~~~~~~f~Tgs~d~ea---------~n~e~~~---------l~~~~~~lif~t~ssd~~~~~~~ar~~~-- 375 (1113)
T KOG0644|consen 316 KDLVDSILFENNGDRFLTGSRDGEA---------RNHEFEQ---------LAWRSNLLIFVTRSSDLSSIVVTARNDH-- 375 (1113)
T ss_pred ccceeeeeccccccccccccCCccc---------ccchhhH---------hhhhccceEEEeccccccccceeeeeee--
Confidence 112223445555556665555441 1111110 00001111111111111 1222222233
Q ss_pred CeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEE-EEeccCCCceEEEEECCCcceeee--cccCceeeeE
Q 005315 478 PDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIV-LAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVE 552 (702)
Q Consensus 478 ~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~-~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~ 552 (702)
.+.+|++.++. .++.+. .+.+..+.++|-...++ .++. ||...|||+-.+..+.. ..++.+.+..
T Consensus 376 -~~~vwnl~~g~------l~H~l~ghsd~~yvLd~Hpfn~ri~msag~---dgst~iwdi~eg~pik~y~~gh~kl~d~k 445 (1113)
T KOG0644|consen 376 -RLCVWNLYTGQ------LLHNLMGHSDEVYVLDVHPFNPRIAMSAGY---DGSTIIWDIWEGIPIKHYFIGHGKLVDGK 445 (1113)
T ss_pred -Eeeeeecccch------hhhhhcccccceeeeeecCCCcHhhhhccC---CCceEeeecccCCcceeeecccceeeccc
Confidence 56778886654 333333 34688899999766655 4555 99999999987665543 4467888999
Q ss_pred ECCCCCEEEEEEeecccccccEEEEEec
Q 005315 553 WDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 553 ~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
||+||..++.... -|.++|....
T Consensus 446 FSqdgts~~lsd~-----hgql~i~g~g 468 (1113)
T KOG0644|consen 446 FSQDGTSIALSDD-----HGQLYILGTG 468 (1113)
T ss_pred cCCCCceEecCCC-----CCceEEeccC
Confidence 9999999888777 6788887654
No 212
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.50 E-value=7.8e-12 Score=115.19 Aligned_cols=255 Identities=16% Similarity=0.270 Sum_probs=164.2
Q ss_pred ccccCCCcccceEEECCCC-cEEEEEeCC--------ceEEeecCcC--------cceeeeec---CCCeeEEEecCCCC
Q 005315 197 PVYKRSYWTESFVQWSPLG-TYLATVHRQ--------GAAVWGGANT--------FNRLMRYA---HPQVKLIDFSPGEK 256 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg-~~lat~~~~--------~i~iw~~~~~--------~~~~~~~~---~~~v~~i~fSpdg~ 256 (702)
..|..|.+.|+.++=||-. +.|+|+..+ ++.||.++.. .+++..+. +..|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 4567788899999999954 556665431 2569987621 22333442 44699999999999
Q ss_pred EEEEEcCCCCCCCcCCCccEEEEEEccCCcE-EeeccCCCcccccCCCCCCCCcccceEEEcCC-CCcEEEEecCCeEEE
Q 005315 257 YLVTYSSHEPSNPRDANRVVINIFDVRTGKV-MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLGKNMISV 334 (702)
Q Consensus 257 ~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~-dg~~la~~~d~~i~v 334 (702)
.|++... ..|.+|++..+.. +..+...... ++.. .+..-+|||+ +|..+++.+++++..
T Consensus 137 klasm~d-----------n~i~l~~l~ess~~vaev~ss~s~------e~~~--~ftsg~WspHHdgnqv~tt~d~tl~~ 197 (370)
T KOG1007|consen 137 KLASMDD-----------NNIVLWSLDESSKIVAEVLSSESA------EMRH--SFTSGAWSPHHDGNQVATTSDSTLQF 197 (370)
T ss_pred eeEEecc-----------CceEEEEcccCcchheeecccccc------cccc--eecccccCCCCccceEEEeCCCcEEE
Confidence 9998874 4799999987765 3333222111 0011 1224589985 899999999999999
Q ss_pred EecCCcccccce-eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCE
Q 005315 335 YETESFTLIDKK-SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY 413 (702)
Q Consensus 335 ~d~~~~~~~~~~-~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 413 (702)
||+++++..... ..|...|.++.|+|+-+++++. ++.++.++|
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt----~gDdgyvri-------------------------------- 241 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVT----CGDDGYVRI-------------------------------- 241 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEE----cCCCccEEE--------------------------------
Confidence 999988765432 2455668999999987655432 445554444
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCc-
Q 005315 414 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHA- 491 (702)
Q Consensus 414 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~- 491 (702)
|+.+....|+ .++++|...|.++.|+|.- +.+++++.|. .|.+|...+-...
T Consensus 242 ---------------------WD~R~tk~pv--~el~~HsHWvW~VRfn~~hdqLiLs~~SDs---~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 242 ---------------------WDTRKTKFPV--QELPGHSHWVWAVRFNPEHDQLILSGGSDS---AVNLSCASSVSSEQ 295 (370)
T ss_pred ---------------------EeccCCCccc--cccCCCceEEEEEEecCccceEEEecCCCc---eeEEEecccccccc
Confidence 4333332332 4677899999999999965 4555666677 7888876432100
Q ss_pred -----------------CceE-----EEEEcCCC--ceeEEEEccCCCEEE-EEeccCCCceEEEEECC
Q 005315 492 -----------------GRVS-----KLTTLKGK--QANALFWSPSGRFIV-LAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 492 -----------------~~~~-----~~~~~~~~--~v~~~~~spdg~~l~-~~~~~~~dg~v~i~d~~ 535 (702)
.+.+ .+.++..| .|++++||.-..+++ +-+. ||.+.|=.+.
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY---DGRviIs~V~ 361 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY---DGRVIISSVP 361 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc---CceEEeecCC
Confidence 0111 12233333 688999988776654 4455 8888776554
No 213
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=5.2e-13 Score=124.59 Aligned_cols=148 Identities=16% Similarity=0.351 Sum_probs=107.2
Q ss_pred eEEEEeeCCcEEEEEEc---CCC----CCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceE
Q 005315 457 IAFAWEPKGHRFAVIHG---DSP----RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 529 (702)
Q Consensus 457 ~~~~~sp~g~~l~~~~~---d~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v 529 (702)
..+.|+|+|++|++... +.. .....+|.++..... ...+..-...+|.+++|+|+|+.+++.. |..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~--~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP--VESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc--cceeeccCCCceEEEEECcCCCEEEEEE-ccCCccc
Confidence 46899999999988766 111 114667777543321 1122222244799999999999887664 2337799
Q ss_pred EEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc-ceeeeeccccEeeEEEeeCCCCCCChh
Q 005315 530 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRTLKDHFFQFLWRPRPPSFLTPE 608 (702)
Q Consensus 530 ~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~l~~~~~~~i~~~~w~p~~~~l~s~~ 608 (702)
.|||++ ++.+...+...++.+.|||+|++|++++.. ...|.+.+||... ..+.......+..+.|+|+|++++++.
T Consensus 86 ~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~--n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG--NLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc--CCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 999997 667777777788999999999999999862 1146799999874 455555556788999999999999876
Q ss_pred hH
Q 005315 609 KE 610 (702)
Q Consensus 609 ~d 610 (702)
..
T Consensus 163 t~ 164 (194)
T PF08662_consen 163 TS 164 (194)
T ss_pred ec
Confidence 43
No 214
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=8.6e-12 Score=133.47 Aligned_cols=241 Identities=16% Similarity=0.214 Sum_probs=143.7
Q ss_pred cEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec----CCeEEEEecCCcccccceeecc
Q 005315 275 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 350 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~----d~~i~v~d~~~~~~~~~~~~~~ 350 (702)
..|.++|.. |...+.+..+...+ + .+.||| ||++|+.+. ...|.+|++.++...... ...
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~------------~-~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~ 233 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPI------------L-SPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFP 233 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCce------------e-cccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCC
Confidence 578899874 44344444443322 1 568999 999999876 247999999876432211 122
Q ss_pred CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 351 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 351 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
..+..++|+|+|+.|++. .+.++...|+.++..+..
T Consensus 234 ~~~~~~~~spDg~~l~~~----~~~~~~~~i~~~d~~~~~---------------------------------------- 269 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVS----LSKDGNPDIYVMDLDGKQ---------------------------------------- 269 (417)
T ss_pred CCccceEECCCCCEEEEE----ECCCCCccEEEEECCCCC----------------------------------------
Confidence 235567888888877652 112333344444432211
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEE
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 510 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 510 (702)
. ..+..+........|+|+|++|++.+..+....|+++++.++.. ..+ ...+.....+.|
T Consensus 270 -------------~--~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~----~~l-~~~~~~~~~~~~ 329 (417)
T TIGR02800 270 -------------L--TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV----RRL-TFRGGYNASPSW 329 (417)
T ss_pred -------------E--EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEe-ecCCCCccCeEE
Confidence 0 11112233344568999999988877654444677777754331 122 223445678899
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeeec--
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTL-- 588 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~-- 588 (702)
||+|++|+.++.......|.+||+.++...............|+|||++|++++.. .....+++.+..|.......
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~--~~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTR--GGRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeC--CCcEEEEEEECCCceeeECCCC
Confidence 99999999987622123789999987654433333344567999999999988873 00134566666676554432
Q ss_pred cccEeeEEE
Q 005315 589 KDHFFQFLW 597 (702)
Q Consensus 589 ~~~i~~~~w 597 (702)
.+.+..+.|
T Consensus 408 ~g~~~~~~w 416 (417)
T TIGR02800 408 NGDVREPAW 416 (417)
T ss_pred CCCcCCCCC
Confidence 234555555
No 215
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=1.6e-11 Score=131.46 Aligned_cols=241 Identities=15% Similarity=0.149 Sum_probs=137.8
Q ss_pred eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCC
Q 005315 226 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 305 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~ 305 (702)
+.++|..+.......-+...+.++.|||||++|++++... +...|++||+.+++............
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~-------~~~~i~v~d~~~g~~~~~~~~~~~~~------- 237 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES-------GKPEIYVQDLATGQREKVASFPGMNG------- 237 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC-------CCcEEEEEECCCCCEEEeecCCCCcc-------
Confidence 6677876222222222233488999999999999887541 12579999998886543322221111
Q ss_pred CCCcccceEEEcCCCCcEEEEec--C--CeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEE
Q 005315 306 VAGVSWPVFRWGGGKDKYFAKLG--K--NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 381 (702)
Q Consensus 306 ~~~~~w~~~~~s~~dg~~la~~~--d--~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 381 (702)
.+.|+| ||+.|+... + ..|.+|++.++.... ...+........|+|+|+.|++.. ...+...|
T Consensus 238 -------~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s----~~~g~~~i 304 (417)
T TIGR02800 238 -------APAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTS----DRGGSPQI 304 (417)
T ss_pred -------ceEECC-CCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEE----CCCCCceE
Confidence 579999 999777543 3 358888887654321 111112234567778777776521 11222344
Q ss_pred EEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEE
Q 005315 382 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 461 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 461 (702)
+.++... .... .+..+...+..+.|
T Consensus 305 y~~d~~~-----------------------------------------------------~~~~--~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 305 YMMDADG-----------------------------------------------------GEVR--RLTFRGGYNASPSW 329 (417)
T ss_pred EEEECCC-----------------------------------------------------CCEE--EeecCCCCccCeEE
Confidence 4443221 1111 11112345567889
Q ss_pred eeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee
Q 005315 462 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 541 (702)
Q Consensus 462 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~ 541 (702)
+|+|+++++++.+++...|.+|++.++. ...+.. ......+.|+|+|++|+++........+++.+........
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~ 403 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGG----ERVLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRAR 403 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCC----eEEccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeE
Confidence 9999999998876544478888876532 112211 2234567899999999888763323457777765432221
Q ss_pred -ecccCceeeeEEC
Q 005315 542 -TAEHFMATDVEWD 554 (702)
Q Consensus 542 -~~~~~~i~~~~~s 554 (702)
....+.+..++|+
T Consensus 404 ~~~~~g~~~~~~ws 417 (417)
T TIGR02800 404 LPLGNGDVREPAWS 417 (417)
T ss_pred CCCCCCCcCCCCCC
Confidence 1223455566664
No 216
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.48 E-value=1.1e-11 Score=130.97 Aligned_cols=261 Identities=17% Similarity=0.306 Sum_probs=164.0
Q ss_pred eEEeecCcCcceeeeecCC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCcE--Eeecc----CCCcc
Q 005315 226 AAVWGGANTFNRLMRYAHP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKV--MRDFK----GSADE 297 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~-~v~~i~fSpdg-~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~--~~~~~----~~~~~ 297 (702)
+.||++.........+..+ .|.|+.|+|.. .+||.|..+ |.|.+||++.+.. ...+. .|...
T Consensus 224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~----------GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYN----------GQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccC----------ceEEEEEccCCCCCCCcccccccccCCcC
Confidence 6699998554555566544 59999999965 556666677 9999999977764 22222 12222
Q ss_pred cccCCCCCCCCcccceEEEcCCCCc--EEEEec-CCeEEEEecCCccc------cccee------eccCCeeEEEeCCCC
Q 005315 298 FAVGGTGGVAGVSWPVFRWGGGKDK--YFAKLG-KNMISVYETESFTL------IDKKS------LKVENVMDFSWSPTD 362 (702)
Q Consensus 298 ~~~~~~~~~~~~~w~~~~~s~~dg~--~la~~~-d~~i~v~d~~~~~~------~~~~~------~~~~~v~~~~~sp~~ 362 (702)
+ . .+.|.. +.. -|++++ ||.|..|+++.... +.... ....++..++|.|..
T Consensus 294 v--------~-----~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~ 359 (555)
T KOG1587|consen 294 V--------T-----AVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD 359 (555)
T ss_pred e--------E-----EEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC
Confidence 2 1 567765 433 355555 99999998774332 11111 122357889998876
Q ss_pred CeEEEEeecCCCCCCCcEE-EEEecCCc-----ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEE
Q 005315 363 PIISLFVPELGGGNQPARV-SLVQIPSK-----EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFR 436 (702)
Q Consensus 363 ~~la~~~~~~~~~~~~~~i-~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~ 436 (702)
....+. |+..|.+.- ........ +.......+......+.++|=+..+...+.+.+ ++||.
T Consensus 360 p~~FiV----GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~---------vriWs 426 (555)
T KOG1587|consen 360 PNHFIV----GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT---------VRIWS 426 (555)
T ss_pred CceEEE----EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce---------eEecc
Confidence 443332 334433322 11111111 112233334455556678887776666666666 78888
Q ss_pred EecCCcceeEEEecCCCCceeEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccC
Q 005315 437 IKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPS 513 (702)
Q Consensus 437 l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spd 513 (702)
......|. +.+..+...|++++|||.- ..|+++..+| .|.|||+...... ++.+.. ....+.+.|++.
T Consensus 427 ~~~~~~Pl--~~~~~~~~~v~~vaWSptrpavF~~~d~~G---~l~iWDLl~~~~~----Pv~s~~~~~~~l~~~~~s~~ 497 (555)
T KOG1587|consen 427 EDVIASPL--LSLDSSPDYVTDVAWSPTRPAVFATVDGDG---NLDIWDLLQDDEE----PVLSQKVCSPALTRVRWSPN 497 (555)
T ss_pred ccCCCCcc--hhhhhccceeeeeEEcCcCceEEEEEcCCC---ceehhhhhccccC----CcccccccccccceeecCCC
Confidence 76444443 3333456779999999954 5677777788 9999999654322 333332 335678999999
Q ss_pred CCEEEEEeccCCCceEEEEECC
Q 005315 514 GRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 514 g~~l~~~~~~~~dg~v~i~d~~ 535 (702)
|+.|++|.. .|.+.+|++.
T Consensus 498 g~~lavGd~---~G~~~~~~l~ 516 (555)
T KOG1587|consen 498 GKLLAVGDA---NGTTHILKLS 516 (555)
T ss_pred CcEEEEecC---CCcEEEEEcC
Confidence 999999998 9999999987
No 217
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=8.1e-10 Score=114.07 Aligned_cols=288 Identities=13% Similarity=0.191 Sum_probs=173.8
Q ss_pred ceEEeecCc-Ccc--eeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--cE--Eeecc-CCC
Q 005315 225 GAAVWGGAN-TFN--RLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KV--MRDFK-GSA 295 (702)
Q Consensus 225 ~i~iw~~~~-~~~--~~~~~-~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g--~~--~~~~~-~~~ 295 (702)
+|.+|..+. ++. .+... .......++++|++++|.+..... ...+.|..|.+... ++ +.... ...
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~------~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS------GDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS------STTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred cEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc------cCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 577776631 222 22322 234578899999999999887752 11278889988653 32 22222 222
Q ss_pred cccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCC-ccccccee-e------------ccCCeeEEEeC
Q 005315 296 DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETES-FTLIDKKS-L------------KVENVMDFSWS 359 (702)
Q Consensus 296 ~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~-~~~~~~~~-~------------~~~~v~~~~~s 359 (702)
.+. .++.+| ++++|+++. ++.|.++++.. +.+..... . ......++.++
T Consensus 88 ~p~--------------~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 88 SPC--------------HIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS 152 (345)
T ss_dssp CEE--------------EEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred CcE--------------EEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence 222 688999 999998887 99999999986 33322211 1 12347789999
Q ss_pred CCCCeEEEEeecCCCCCCCcEEEEEecCCcc--ee--eeeee-cccccceeEEccCCCEEEEEEcccccccccccccEEE
Q 005315 360 PTDPIISLFVPELGGGNQPARVSLVQIPSKE--EL--RQKNL-FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 434 (702)
Q Consensus 360 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~--~~~~~-~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 434 (702)
|+|+++++. .-+.-+|+.|+..... .. ....+ .......+.|+|+|+++++...... .+.+
T Consensus 153 pdg~~v~v~------dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~--------~v~v 218 (345)
T PF10282_consen 153 PDGRFVYVP------DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN--------TVSV 218 (345)
T ss_dssp TTSSEEEEE------ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT--------EEEE
T ss_pred CCCCEEEEE------ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC--------cEEE
Confidence 999988762 2334467777665433 21 11121 2233456789999999988765322 3677
Q ss_pred EEEecCCcceeEEE-ec---C-C--CCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCce
Q 005315 435 FRIKERDIPIEVLE-LD---N-K--NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQA 505 (702)
Q Consensus 435 ~~l~~~~~~~~~~~-l~---~-h--~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v 505 (702)
|.+.........+. +. . . ......++++|+|++|+++.... +.|.+|++....+ ....+..+. +...
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g--~l~~~~~~~~~G~~P 294 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATG--TLTLVQTVPTGGKFP 294 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTT--TEEEEEEEEESSSSE
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCC--ceEEEEEEeCCCCCc
Confidence 77773332222221 11 1 1 12577899999999998887643 3899999954332 233444443 4457
Q ss_pred eEEEEccCCCEEEEEeccCCCceEEEEECC--Ccceeeec---ccCceeeeEE
Q 005315 506 NALFWSPSGRFIVLAGLKGFNGQLEFYNVD--ELETMATA---EHFMATDVEW 553 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~~~~dg~v~i~d~~--~~~~~~~~---~~~~i~~~~~ 553 (702)
..++++|+|++|++++.. ++.|.+|+++ ++.+.... ......|+.|
T Consensus 295 r~~~~s~~g~~l~Va~~~--s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVANQD--SNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEE-TTSSEEEEEETT--TTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred cEEEEeCCCCEEEEEecC--CCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 889999999999998752 6789998764 66654432 3355556655
No 218
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.47 E-value=4.2e-10 Score=112.88 Aligned_cols=284 Identities=10% Similarity=0.092 Sum_probs=164.6
Q ss_pred ceEEeecCcCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCC
Q 005315 225 GAAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGT 303 (702)
Q Consensus 225 ~i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~ 303 (702)
.|.+.|.. +.+.+..+.... -..+ +||||+.|.++..-......+.....|.|||+.+++.++.+..+..+..+.
T Consensus 28 ~v~ViD~~-~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~-- 103 (352)
T TIGR02658 28 QVYTIDGE-AGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV-- 103 (352)
T ss_pred eEEEEECC-CCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc--
Confidence 38899999 888888776443 3334 999999998887721111122222689999999999999888654421000
Q ss_pred CCCCCcccceEEEcCCCCcEEEEec---CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcE
Q 005315 304 GGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 380 (702)
Q Consensus 304 ~~~~~~~w~~~~~s~~dg~~la~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 380 (702)
+... + .+.+|| ||+++.... ++.|.+.|+.+++.+....... ...-+..++++..+.+ .|+...
T Consensus 104 -~~~~--~-~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~-------~Dg~~~ 170 (352)
T TIGR02658 104 -GTYP--W-MTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHC-------RDGSLA 170 (352)
T ss_pred -cCcc--c-eEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEe-------ecCceE
Confidence 0000 1 589999 999888765 7899999999988775443211 1222223222222221 222222
Q ss_pred EEEEecCCcceeeeeeeccccc----ceeE-EccCCCEEEEEEcccccccccccccEEEEEEecCCc----ceeEEEec-
Q 005315 381 VSLVQIPSKEELRQKNLFSVSD----CKMY-WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI----PIEVLELD- 450 (702)
Q Consensus 381 i~~~~~~~~~~~~~~~~~~~~~----~~~~-~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~l~- 450 (702)
...++...........++.... .+.. +..+|+++.+... +. +.+.++..... +...+...
T Consensus 171 ~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~---------V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 171 KVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK---------IFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred EEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce---------EEEEecCCCcceecceeeeccccc
Confidence 2222211111111112211100 0002 2337877776555 33 44444332211 11111110
Q ss_pred ----CCCCceeEEEEeeCCcEEEEEEcC-------CCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCC-EE
Q 005315 451 ----NKNDKIIAFAWEPKGHRFAVIHGD-------SPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR-FI 517 (702)
Q Consensus 451 ----~h~~~v~~~~~sp~g~~l~~~~~d-------~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~-~l 517 (702)
-..+.+.-++++|+|+++++.... .+.+.|.++|..+.+ .+..+. ++.+..+++||||+ +|
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k------vi~~i~vG~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK------RLRKIELGHEIDSINVSQDAKPLL 314 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe------EEEEEeCCCceeeEEECCCCCeEE
Confidence 012334449999999998885421 122489999987654 566655 66889999999999 66
Q ss_pred EEEeccCCCceEEEEECCCcceeeec
Q 005315 518 VLAGLKGFNGQLEFYNVDELETMATA 543 (702)
Q Consensus 518 ~~~~~~~~dg~v~i~d~~~~~~~~~~ 543 (702)
++... . ++.|.++|..+++.+.+.
T Consensus 315 yvtn~-~-s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 315 YALST-G-DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEeCC-C-CCcEEEEECcCCeEEeee
Confidence 66652 2 788999999999888775
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=1.2e-10 Score=109.13 Aligned_cols=238 Identities=12% Similarity=0.200 Sum_probs=150.9
Q ss_pred cceEEECCCCcEEEEEeCCceEEeecCcCcceeeeec--CCC--eeEEEecCCCCEEEE-EcCCCCCCCcCCCccEEEEE
Q 005315 206 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA--HPQ--VKLIDFSPGEKYLVT-YSSHEPSNPRDANRVVINIF 280 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~--~~~--v~~i~fSpdg~~l~t-~s~d~~~~~~~~~~~~i~vw 280 (702)
..+++|+.|-..++.+...|.+||+.+ ..+...+.. ..+ +.-+-| -.++||- |+...+ +... ..|.||
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~-P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~p---ky~p-NkviIW 80 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCD-PFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRP---KYPP-NKVIIW 80 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecC-chhhhhhhccccCchhhhhHhh--hhceEEEecCCCCC---CCCC-ceEEEE
Confidence 345999999999999999999999998 444322221 122 222333 2345543 333322 2222 579999
Q ss_pred EccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCC-cccccceeecc--CCeeEEE
Q 005315 281 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETES-FTLIDKKSLKV--ENVMDFS 357 (702)
Q Consensus 281 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~-~~~~~~~~~~~--~~v~~~~ 357 (702)
|=...+++.++....... .+.+++ ..|+..-.+.|.||..++ .+++....... .++.+++
T Consensus 81 DD~k~~~i~el~f~~~I~--------------~V~l~r---~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 81 DDLKERCIIELSFNSEIK--------------AVKLRR---DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred ecccCcEEEEEEecccee--------------eEEEcC---CeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 966677777766544332 566655 678888899999999873 33332221111 1121111
Q ss_pred eCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEE
Q 005315 358 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 437 (702)
Q Consensus 358 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 437 (702)
-+....+||+ | +... +.+++.++
T Consensus 144 ~~~~k~~Laf--P----g~k~---------------------------------------------------GqvQi~dL 166 (346)
T KOG2111|consen 144 PTSNKSLLAF--P----GFKT---------------------------------------------------GQVQIVDL 166 (346)
T ss_pred CCCCceEEEc--C----CCcc---------------------------------------------------ceEEEEEh
Confidence 1111122222 1 1111 12344444
Q ss_pred ecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC----ceeEEEEccC
Q 005315 438 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK----QANALFWSPS 513 (702)
Q Consensus 438 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~----~v~~~~~spd 513 (702)
...... ....+.+|...|.+++.+-+|..+|+++..|. -|+|||..++. ++.++..+ .+.+++|||+
T Consensus 167 ~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT--LIRIFdt~~g~------~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 167 ASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGT--LIRIFDTEDGT------LLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred hhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcE--EEEEEEcCCCc------EeeeeecCCchheEEEEEeCCC
Confidence 332211 22456699999999999999999999999884 79999998776 56665532 6899999999
Q ss_pred CCEEEEEeccCCCceEEEEECCC
Q 005315 514 GRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 514 g~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
+.+|++++. .|+|+||.+..
T Consensus 238 ~s~LavsSd---KgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSD---KGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcC---CCeEEEEEeec
Confidence 999999998 89999999874
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.46 E-value=1.2e-11 Score=123.40 Aligned_cols=239 Identities=18% Similarity=0.310 Sum_probs=143.5
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEE------eeccCCCcccccCCCCCCCCcccceEEE---
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM------RDFKGSADEFAVGGTGGVAGVSWPVFRW--- 316 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~w~~~~~--- 316 (702)
+....++-.|++|+..-.+ .+++|+.+.+..+ +.+.+. .+. |-.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg~-----------~lyv~~~~g~~~~~~pi~k~~y~gt-~P~--------------cHdfn~~ 179 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGR-----------ELYVYSYRGAADLSKPIDKREYKGT-SPT--------------CHDFNSF 179 (636)
T ss_pred eeeccccCCCCEEEEecCC-----------eEEEEEccCcchhccchhhhcccCC-CCc--------------eeccccc
Confidence 5566667778888877665 5889987643221 112211 111 2222
Q ss_pred --cCCCCc-EEEEecCCeEEEEecCCccccc----ceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 317 --GGGKDK-YFAKLGKNMISVYETESFTLID----KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 317 --s~~dg~-~la~~~d~~i~v~d~~~~~~~~----~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
.+ .+- .|+.-+.|.|.+++........ ...+....|+++.|-|.+..+.++ +..++ .+++|+..-
T Consensus 180 ~a~~-~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~----a~~sG--nlyly~~~~- 251 (636)
T KOG2394|consen 180 TATP-KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLV----AHASG--NLYLYDKEI- 251 (636)
T ss_pred ccCC-CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEE----EEecC--ceEEeeccc-
Confidence 23 333 4444447888888766422111 111223569999999976544332 11333 344444310
Q ss_pred ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEE
Q 005315 390 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 469 (702)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 469 (702)
......-....-+++..+.+......+. ..|+....+ ..+.|+.++|+|||++||
T Consensus 252 -------~~~~t~p~~~~~k~~~~f~i~t~ksk~~----------------rNPv~~w~~--~~g~in~f~FS~DG~~LA 306 (636)
T KOG2394|consen 252 -------VCGATAPSYQALKDGDQFAILTSKSKKT----------------RNPVARWHI--GEGSINEFAFSPDGKYLA 306 (636)
T ss_pred -------cccCCCCcccccCCCCeeEEeeeecccc----------------CCccceeEe--ccccccceeEcCCCceEE
Confidence 0011111111234555555433321100 122222222 156899999999999999
Q ss_pred EEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--ccc
Q 005315 470 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEH 545 (702)
Q Consensus 470 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~ 545 (702)
+.+.|+ .++||+..+.. ++..++ -+...+++|||||+||++++. |.-|.||.+...++++. +|.
T Consensus 307 ~VSqDG---fLRvF~fdt~e------Llg~mkSYFGGLLCvcWSPDGKyIvtGGE---DDLVtVwSf~erRVVARGqGHk 374 (636)
T KOG2394|consen 307 TVSQDG---FLRIFDFDTQE------LLGVMKSYFGGLLCVCWSPDGKYIVTGGE---DDLVTVWSFEERRVVARGQGHK 374 (636)
T ss_pred EEecCc---eEEEeeccHHH------HHHHHHhhccceEEEEEcCCccEEEecCC---cceEEEEEeccceEEEeccccc
Confidence 999999 99999997644 222222 235789999999999999998 99999999999999886 667
Q ss_pred CceeeeEECC
Q 005315 546 FMATDVEWDP 555 (702)
Q Consensus 546 ~~i~~~~~sp 555 (702)
..|+.++|+|
T Consensus 375 SWVs~VaFDp 384 (636)
T KOG2394|consen 375 SWVSVVAFDP 384 (636)
T ss_pred cceeeEeecc
Confidence 8999999984
No 221
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=8.6e-10 Score=106.03 Aligned_cols=283 Identities=11% Similarity=0.119 Sum_probs=179.8
Q ss_pred CceEEEecCC-CCCCC-cccccCCCcccceEEECCCCcEEEEEeCC----ceEEeecC---cCcceeeeecCC--CeeEE
Q 005315 181 TDTEVLWNDA-RHLKP-EPVYKRSYWTESFVQWSPLGTYLATVHRQ----GAAVWGGA---NTFNRLMRYAHP--QVKLI 249 (702)
Q Consensus 181 ~~~~~~w~~~-~~~~~-~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~i~iw~~~---~~~~~~~~~~~~--~v~~i 249 (702)
...+..|+.. ..++. ....-.+....+.++|+|++++|.++..+ +|..|.++ |....+.+...+ .-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 3444567764 22322 22334566788999999999999998766 27666555 223333333322 24889
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-CcEEee--ccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEE
Q 005315 250 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRD--FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 326 (702)
Q Consensus 250 ~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~ 326 (702)
+++++|++|+++.... +.|.++-+.. |.+... ...|.... .. ..+..-+.-+..++| ++++|++
T Consensus 95 svd~~g~~vf~AnY~~---------g~v~v~p~~~dG~l~~~v~~~~h~g~~--p~-~rQ~~~h~H~a~~tP-~~~~l~v 161 (346)
T COG2706 95 SVDEDGRFVFVANYHS---------GSVSVYPLQADGSLQPVVQVVKHTGSG--PH-ERQESPHVHSANFTP-DGRYLVV 161 (346)
T ss_pred EECCCCCEEEEEEccC---------ceEEEEEcccCCccccceeeeecCCCC--CC-ccccCCccceeeeCC-CCCEEEE
Confidence 9999999999998872 7899998855 443221 11111110 00 000000011568999 9999999
Q ss_pred ec--CCeEEEEecCCcccccceeec---cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc--eeeeeee--
Q 005315 327 LG--KNMISVYETESFTLIDKKSLK---VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNL-- 397 (702)
Q Consensus 327 ~~--d~~i~v~d~~~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~-- 397 (702)
.. -..|.+|++..+.+....... ..+-+.+.|+|++++..+. .| -+.++.+|.++....+ .+.....
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v-~E---L~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV-NE---LNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred eecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEE-ec---cCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 88 678999999977765433222 2357899999999876553 22 4566677777664322 2222111
Q ss_pred ----cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-CCCCceeEEEEeeCCcEEEEEE
Q 005315 398 ----FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIH 472 (702)
Q Consensus 398 ----~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~ 472 (702)
.......++.+++|++|.+...... .+.+|.+...+.....+... .+....+.+.++|.|++|+++.
T Consensus 238 ~dF~g~~~~aaIhis~dGrFLYasNRg~d--------sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGRFLYASNRGHD--------SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred cccCCCCceeEEEECCCCCEEEEecCCCC--------eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 1233455788999999988654432 47888888876655544433 2334478999999999999999
Q ss_pred cCCCCCeEEEEEeecccC
Q 005315 473 GDSPRPDISFYSMRTAQH 490 (702)
Q Consensus 473 ~d~~~~~v~i~d~~~~~~ 490 (702)
.++. +|.+|.++...+
T Consensus 310 q~sd--~i~vf~~d~~TG 325 (346)
T COG2706 310 QKSD--NITVFERDKETG 325 (346)
T ss_pred cCCC--cEEEEEEcCCCc
Confidence 8774 799999875544
No 222
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=7.4e-13 Score=132.78 Aligned_cols=244 Identities=12% Similarity=0.140 Sum_probs=163.9
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC--------CcEEeeccCCCcccccCCCCCCCCcccce
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT--------GKVMRDFKGSADEFAVGGTGGVAGVSWPV 313 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 313 (702)
+...|+.++|.|....|++++.+ ++|.+|++.. -+++.+|.+|.+++. |
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed----------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl-------------~ 349 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASED----------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVL-------------C 349 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccc----------cchhhhhhcccCCccccceeeeEEEecccCceE-------------E
Confidence 34459999999999999999999 9999999922 246889999999874 8
Q ss_pred EEEcCCCCcEEEEec-CCeEEEEecCCcc----------cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEE
Q 005315 314 FRWGGGKDKYFAKLG-KNMISVYETESFT----------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVS 382 (702)
Q Consensus 314 ~~~s~~dg~~la~~~-d~~i~v~d~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 382 (702)
+..++ +++.+.+++ ||+|+.|+++... +......|...|+.+++|+....|+. ++.|++++.|
T Consensus 350 v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls-----cs~DgTvr~w 423 (577)
T KOG0642|consen 350 VVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS-----CSSDGTVRLW 423 (577)
T ss_pred EEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee-----ecCCceEEee
Confidence 89999 999999999 9999999776211 22334567777889999998888888 7788888876
Q ss_pred EEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEe
Q 005315 383 LVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 462 (702)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 462 (702)
...-... ++..... ..+...++.+-
T Consensus 424 ~~~~~~~-------------------------~~f~~~~------------------------------e~g~Plsvd~~ 448 (577)
T KOG0642|consen 424 EPTEESP-------------------------CTFGEPK------------------------------EHGYPLSVDRT 448 (577)
T ss_pred ccCCcCc-------------------------cccCCcc------------------------------ccCCcceEeec
Confidence 5432111 0000000 01111112111
Q ss_pred eCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEE--cC----CCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 463 PKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTT--LK----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 463 p~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~--~~----~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
..-..+.+++. -+ .-.++++.... ....+.. .+ ...++.+.+.|.+.+.+++.. ++.|+++|..
T Consensus 449 ss~~a~~~~s~~~~---~~~~~~~ev~s---~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he---d~~Ir~~dn~ 519 (577)
T KOG0642|consen 449 SSRPAHSLASFRFG---YTSIDDMEVVS---DLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE---DRSIRFFDNK 519 (577)
T ss_pred cchhHhhhhhcccc---cccchhhhhhh---heeeccccCCCcccccCccceEEecCCCCeeEeccc---CCceeccccc
Confidence 10000111111 00 11122221111 0001100 01 124788999999999888887 9999999999
Q ss_pred Ccceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccce
Q 005315 536 ELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL 583 (702)
Q Consensus 536 ~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~ 583 (702)
++..+.. .|...++++++.|+|-+|++++. |+.+++|.+.-+.
T Consensus 520 ~~~~l~s~~a~~~svtslai~~ng~~l~s~s~-----d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 520 TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH-----DGSVRLWKLDVKT 564 (577)
T ss_pred ccccchheeeccceecceeecCCCceEEeecC-----Cceeehhhccchh
Confidence 9998875 67788999999999999999999 9999999986443
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=2.1e-11 Score=117.18 Aligned_cols=218 Identities=18% Similarity=0.222 Sum_probs=149.3
Q ss_pred CCcEEEEecCCeEEEEecCCccccccee---eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcce-eeee
Q 005315 320 KDKYFAKLGKNMISVYETESFTLIDKKS---LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE-LRQK 395 (702)
Q Consensus 320 dg~~la~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~ 395 (702)
||.++++.++|.+++|....+.+-.... ...+++..+.-+|..+.|+.+ ||..+...+-+|++...+. ...+
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~----GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVAT----GGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEec----Cchhcccceeeeecccceeeeecc
Confidence 7778887779999999988554322211 122456777777776655542 5555223344444433221 1111
Q ss_pred eecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC--CcEEEEEEc
Q 005315 396 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--GHRFAVIHG 473 (702)
Q Consensus 396 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--g~~l~~~~~ 473 (702)
++. ..+| .+.+ .-.++++.|-|. ...||+++.
T Consensus 191 Nvp------------nD~L-------------------------------~LrV---PvW~tdi~Fl~g~~~~~fat~T~ 224 (412)
T KOG3881|consen 191 NVP------------NDRL-------------------------------GLRV---PVWITDIRFLEGSPNYKFATITR 224 (412)
T ss_pred CCC------------Cccc-------------------------------ccee---eeeeccceecCCCCCceEEEEec
Confidence 110 0000 0111 234556677665 788999998
Q ss_pred CCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee---cccCce
Q 005315 474 DSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMA 548 (702)
Q Consensus 474 d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~---~~~~~i 548 (702)
-+ .|++||.+.+.. ++..+. .++++++..-|+|++|+++.. .|.+..||+++++++.. +-.+.+
T Consensus 225 ~h---qvR~YDt~~qRR-----PV~~fd~~E~~is~~~l~p~gn~Iy~gn~---~g~l~~FD~r~~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 225 YH---QVRLYDTRHQRR-----PVAQFDFLENPISSTGLTPSGNFIYTGNT---KGQLAKFDLRGGKLLGCGLKGITGSI 293 (412)
T ss_pred ce---eEEEecCcccCc-----ceeEeccccCcceeeeecCCCcEEEEecc---cchhheecccCceeeccccCCccCCc
Confidence 88 999999975543 555544 678999999999999999988 89999999998888754 445889
Q ss_pred eeeEECCCCCEEEEEEeecccccccEEEEEeccc-eeeee-ccccEeeEEEeeCCCC
Q 005315 549 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRT-LKDHFFQFLWRPRPPS 603 (702)
Q Consensus 549 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~l~~~-~~~~i~~~~w~p~~~~ 603 (702)
+++..+|.+++||+++. |..++|+|++.+ ++++. -...++.+.++++-+.
T Consensus 294 rsih~hp~~~~las~GL-----DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCGL-----DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVNI 345 (412)
T ss_pred ceEEEcCCCceEEeecc-----ceeEEEeecccchhhhhhhhhccccEEEecCCccc
Confidence 99999999999999999 999999999974 44443 4477888888877543
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=5.7e-13 Score=130.30 Aligned_cols=256 Identities=14% Similarity=0.183 Sum_probs=194.7
Q ss_pred ceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005315 207 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 284 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~ 284 (702)
..+.++.+|++|+.|+..| +..+|+. +....+.+... .|.++.|-.+.+++|++... .++||| ..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~-t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~-----------y~yvYD-~~ 199 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWV-TKKLHFEINVMETVRDVTFLHNEQFFAVAQKK-----------YVYVYD-NN 199 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecc-cceeeeeeehhhhhhhhhhhcchHHHHhhhhc-----------eEEEec-CC
Confidence 4678999999999999999 9999999 88888888755 49999999999999988776 799999 68
Q ss_pred CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCC
Q 005315 285 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDP 363 (702)
Q Consensus 285 g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~ 363 (702)
|..+..+..+.... .+.|-| .--+|++++ .|.++.-|+.+|+++.......+.+..++-+|-+.
T Consensus 200 GtElHClk~~~~v~--------------rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 200 GTELHCLKRHIRVA--------------RLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA 264 (545)
T ss_pred CcEEeehhhcCchh--------------hhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc
Confidence 99999888876654 578888 777788888 89999999999999988777777788888888888
Q ss_pred eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005315 364 IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 443 (702)
Q Consensus 364 ~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 443 (702)
.+.+ |..++++.+ |||+.+--
T Consensus 265 Vih~-----GhsnGtVSl-------------------------WSP~skeP----------------------------- 285 (545)
T KOG1272|consen 265 VIHL-----GHSNGTVSL-------------------------WSPNSKEP----------------------------- 285 (545)
T ss_pred eEEE-----cCCCceEEe-------------------------cCCCCcch-----------------------------
Confidence 8877 555555442 55554321
Q ss_pred eeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEec
Q 005315 444 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 444 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~ 522 (702)
.+.+..|.++|.++++.++|+|+|+++.|. .++|||++... .+.++. .++...+++|..|- ||++ .
T Consensus 286 --LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr---~~kIWDlR~~~------ql~t~~tp~~a~~ls~Sqkgl-LA~~-~ 352 (545)
T KOG1272|consen 286 --LVKILCHRGPVSSIAVDRGGRYMATTGLDR---KVKIWDLRNFY------QLHTYRTPHPASNLSLSQKGL-LALS-Y 352 (545)
T ss_pred --HHHHHhcCCCcceEEECCCCcEEeeccccc---ceeEeeecccc------ccceeecCCCccccccccccc-eeee-c
Confidence 123447899999999999999999999999 99999997543 333333 46788899998874 3333 3
Q ss_pred cCCCceEEEEECC-C----cceee--ecccCceeeeEECCCCCEEEEEEe
Q 005315 523 KGFNGQLEFYNVD-E----LETMA--TAEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 523 ~~~dg~v~i~d~~-~----~~~~~--~~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
...|.||.=. . ++... ..-.+.|.++.|.|-...|-.|-.
T Consensus 353 ---G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 353 ---GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred ---CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecccc
Confidence 4578999522 1 11111 122358889999997666655544
No 225
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=5.9e-12 Score=122.81 Aligned_cols=211 Identities=11% Similarity=0.118 Sum_probs=150.2
Q ss_pred eEEEEeCCceEEEecCCCC--CCCccc------------------ccCCCcccceEEECCCC-cEEEEEeCCc-eEEeec
Q 005315 174 QFVIRSGTDTEVLWNDARH--LKPEPV------------------YKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGG 231 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~--~~~~~~------------------~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~ 231 (702)
..+++.-+..+-+|+..-. -.|... -++|+..|.+++|...- ..||+|+.|. |++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 4456666777779996421 112222 23688889999998764 5788999998 889999
Q ss_pred CcCcceeeeec-CC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCc---EEeeccCCCcccccCCCCC
Q 005315 232 ANTFNRLMRYA-HP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFAVGGTGG 305 (702)
Q Consensus 232 ~~~~~~~~~~~-~~-~v~~i~fSpdg-~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~---~~~~~~~~~~~~~~~~~~~ 305 (702)
. ++++...+. |. .|.++.|+|.. .+|++|+.| ++|.+.|++.-. ..-.+.+.-.
T Consensus 274 ~-~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D----------~~V~l~D~R~~~~s~~~wk~~g~VE--------- 333 (463)
T KOG0270|consen 274 D-TGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYD----------GTVALKDCRDPSNSGKEWKFDGEVE--------- 333 (463)
T ss_pred C-CCCcceehhhcCCceeEEEecCCCceEEEecccc----------ceEEeeeccCccccCceEEeccceE---------
Confidence 9 888888875 43 39999999974 789999999 999999987311 1122222211
Q ss_pred CCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCc-ccccceeeccCCeeEEEeCCCCCe-EEEEeecCCCCCCCcEEE
Q 005315 306 VAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF-TLIDKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVS 382 (702)
Q Consensus 306 ~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~ 382 (702)
.+.|.|+....+.++. ||+|+-+|++.. +.+.....|..+|.++++++..+. +++ ++.++.+++|
T Consensus 334 -------kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t-----~s~d~~Vklw 401 (463)
T KOG0270|consen 334 -------KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST-----ASTDKVVKLW 401 (463)
T ss_pred -------EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee-----ccccceEEEE
Confidence 5688883334455555 999999999865 778888889999999999998654 555 7799999999
Q ss_pred EEecCCcceeeeeeecccccceeEEccCCCEEEE
Q 005315 383 LVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 416 (702)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 416 (702)
.++..+.+.+..+.+.-...++++..|+-.++++
T Consensus 402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la 435 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLA 435 (463)
T ss_pred eecCCCCcccccccccccceeecccCCCcceEEE
Confidence 9998877766655543333444555666554444
No 226
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.44 E-value=1.2e-11 Score=118.74 Aligned_cols=140 Identities=13% Similarity=0.241 Sum_probs=108.7
Q ss_pred cccCCCcccceEEECCC-CcEEEEEeCCc-eEEeecCcCcce-------eeee-cCC-CeeEEEecCCC-CEEEEEcCCC
Q 005315 198 VYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGANTFNR-------LMRY-AHP-QVKLIDFSPGE-KYLVTYSSHE 265 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~~~~-------~~~~-~~~-~v~~i~fSpdg-~~l~t~s~d~ 265 (702)
.+.+|+.+|..++|+|- ...||+|+.|. |.||.+. .... +..+ .|. .|..++|+|.- +.|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IP-e~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D- 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIP-ENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD- 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECC-CcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC-
Confidence 45799999999999995 46788999998 7899887 3221 2222 344 59999999975 678899999
Q ss_pred CCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccc
Q 005315 266 PSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID 344 (702)
Q Consensus 266 ~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~ 344 (702)
.+|.|||+.||+.+-++. |.+.+ | ++.|+. ||.+|++.. |..|+|||..+++++.
T Consensus 154 ---------n~v~iWnv~tgeali~l~-hpd~i------------~-S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 154 ---------NTVSIWNVGTGEALITLD-HPDMV------------Y-SMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred ---------ceEEEEeccCCceeeecC-CCCeE------------E-EEEecc-CCceeeeecccceeEEEcCCCCcEee
Confidence 899999999999988888 65554 3 689999 999999999 9999999999998886
Q ss_pred ceeeccC-CeeEEEeCCCCC
Q 005315 345 KKSLKVE-NVMDFSWSPTDP 363 (702)
Q Consensus 345 ~~~~~~~-~v~~~~~sp~~~ 363 (702)
....|.+ .-....|-.+|.
T Consensus 210 e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred ecccccCCCcceeEEeccCc
Confidence 6544433 233445555666
No 227
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.44 E-value=3.5e-11 Score=111.12 Aligned_cols=264 Identities=13% Similarity=0.233 Sum_probs=173.3
Q ss_pred eEEEcCC-C-CcEEEEec-----CCeEEEEecC--Ccccccceee-ccCCeeEEEeCCCC-----CeEEEEeecCCCCCC
Q 005315 313 VFRWGGG-K-DKYFAKLG-----KNMISVYETE--SFTLIDKKSL-KVENVMDFSWSPTD-----PIISLFVPELGGGNQ 377 (702)
Q Consensus 313 ~~~~s~~-d-g~~la~~~-----d~~i~v~d~~--~~~~~~~~~~-~~~~v~~~~~sp~~-----~~la~~~~~~~~~~~ 377 (702)
.+.||.. + +-+||.++ .+.|.|..+. +++.+....+ |.-+++.+.|.|+. .+||+ .+.
T Consensus 49 a~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-------s~D 121 (364)
T KOG0290|consen 49 AMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-------SSD 121 (364)
T ss_pred eeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc-------ccC
Confidence 4566621 3 34677776 5777776554 4444443332 33358899999985 35665 667
Q ss_pred CcEEEEEecCCccee-------eeeeecccccceeEEcc-CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005315 378 PARVSLVQIPSKEEL-------RQKNLFSVSDCKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 449 (702)
Q Consensus 378 ~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 449 (702)
..|+|.......+.. ....-+......+-|+. +-+++.+.+-+.+ ..+|++...........+
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT---------CTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT---------CTIWDIETGVSGTVKTQL 192 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe---------EEEEEEeeccccceeeEE
Confidence 788887765333211 11222344555677876 4556666666655 789999865221123345
Q ss_pred cCCCCceeEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEEEEccCC-CEEEEEeccCC
Q 005315 450 DNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSG-RFIVLAGLKGF 525 (702)
Q Consensus 450 ~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg-~~l~~~~~~~~ 525 (702)
-+|...|.+++|...| +.||+++.|| .|++||++..... ..+..-+. .+.-.++|++.. +++|+-..+
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDG---SvRmFDLR~leHS---TIIYE~p~~~~pLlRLswnkqDpnymATf~~d-- 264 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADG---SVRMFDLRSLEHS---TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD-- 264 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCC---cEEEEEecccccc---eEEecCCCCCCcceeeccCcCCchHHhhhhcC--
Confidence 5999999999999855 5788889999 9999999876543 23333332 356778898854 566665541
Q ss_pred CceEEEEECCC-cceee--ecccCceeeeEECCCCC-EEEEEEeecccccccEEEEEeccce--------eeeeccccEe
Q 005315 526 NGQLEFYNVDE-LETMA--TAEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGKL--------LYRTLKDHFF 593 (702)
Q Consensus 526 dg~v~i~d~~~-~~~~~--~~~~~~i~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~~--------l~~~~~~~i~ 593 (702)
...|.|.|++. +..+. ..|.+.|+.++|.|..+ .|++++. |....|||++.-. +.-...+.|.
T Consensus 265 S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD-----D~qaliWDl~q~~~~~~~dPilay~a~~EVN 339 (364)
T KOG0290|consen 265 SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD-----DCQALIWDLQQMPRENGEDPILAYTAGGEVN 339 (364)
T ss_pred CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC-----cceEEEEecccccccCCCCchhhhhccceee
Confidence 56799999984 22333 37789999999999765 7888888 9999999987321 1122457899
Q ss_pred eEEEeeCC-CCCC
Q 005315 594 QFLWRPRP-PSFL 605 (702)
Q Consensus 594 ~~~w~p~~-~~l~ 605 (702)
++.|+|.. ..++
T Consensus 340 qi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 340 QIQWSSSQPDWIA 352 (364)
T ss_pred eeeecccCCCEEE
Confidence 99999754 3443
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.43 E-value=1.7e-11 Score=122.26 Aligned_cols=136 Identities=20% Similarity=0.447 Sum_probs=103.2
Q ss_pred CCceeEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCc-----------CceE-----------EEE--EcCCCceeE
Q 005315 453 NDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHA-----------GRVS-----------KLT--TLKGKQANA 507 (702)
Q Consensus 453 ~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~-----------~~~~-----------~~~--~~~~~~v~~ 507 (702)
+..|+++.|-|.+ ..|+++..++ .+++||..-.... ..+. ++. .+....++.
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sG---nlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~ 295 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASG---NLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINE 295 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecC---ceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccc
Confidence 4789999999954 4566666677 8888875321000 0000 111 112336789
Q ss_pred EEEccCCCEEEEEeccCCCceEEEEECCCcceeeeccc--CceeeeEECCCCCEEEEEEeecccccccEEEEEeccc-ee
Q 005315 508 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LL 584 (702)
Q Consensus 508 ~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~--~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~l 584 (702)
++|||||++||+.+. ||.|+|||+.+.+++...+. +...+++|||||+||++|+. |.-|.||.+..+ .+
T Consensus 296 f~FS~DG~~LA~VSq---DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGE-----DDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQ---DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGE-----DDLVTVWSFEERRVV 367 (636)
T ss_pred eeEcCCCceEEEEec---CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCC-----cceEEEEEeccceEE
Confidence 999999999999998 99999999999888776544 78899999999999999999 999999999854 44
Q ss_pred ee--eccccEeeEEEee
Q 005315 585 YR--TLKDHFFQFLWRP 599 (702)
Q Consensus 585 ~~--~~~~~i~~~~w~p 599 (702)
.. -|...|..++|.|
T Consensus 368 ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccccccceeeEeecc
Confidence 43 3778999999998
No 229
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.9e-11 Score=115.50 Aligned_cols=287 Identities=12% Similarity=0.170 Sum_probs=179.5
Q ss_pred eEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECC--CCcEEEEEeCCc-eEEeecCcCcceeeee---cCC--C
Q 005315 174 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSP--LGTYLATVHRQG-AAVWGGANTFNRLMRY---AHP--Q 245 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Sp--dg~~lat~~~~~-i~iw~~~~~~~~~~~~---~~~--~ 245 (702)
.+++..+++.+.+++. .+++....++++...++.+.|.. .+..+.+++.+| |++||+. ......++ .++ .
T Consensus 42 ~vav~lSngsv~lyd~-~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R-s~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDK-GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR-SQAESARISWTQQSGTP 119 (376)
T ss_pred eEEEEecCCeEEEEec-cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee-cchhhhheeccCCCCCc
Confidence 5677888899989998 45788888999999999999987 567888999998 8999999 66655554 344 2
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcE-Eeec-cCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV-MRDF-KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~-~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
-.|++..-.++.+++|..-.-.+ ..|.+||++..+. ++.+ ..|.+.++ +++|.|++-+.
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~------A~v~lwDvR~~qq~l~~~~eSH~DDVT-------------~lrFHP~~pnl 180 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSD------ASVVLWDVRSEQQLLRQLNESHNDDVT-------------QLRFHPSDPNL 180 (376)
T ss_pred ceEeeccCcCCeEEeccccccCc------eEEEEEEeccccchhhhhhhhccCcce-------------eEEecCCCCCe
Confidence 56666666778888776442222 5799999988776 6655 45666665 89999967789
Q ss_pred EEEec-CCeEEEEecCCccc---ccceeeccCCeeEEEeCCCC-CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec
Q 005315 324 FAKLG-KNMISVYETESFTL---IDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 398 (702)
Q Consensus 324 la~~~-d~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 398 (702)
|++++ ||-|.|||+....- +.....+...|..+.|+.++ +.|.+. +...+..+|.++-.+ +.
T Consensus 181 LlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~cl-----TH~Etf~~~ele~~~--~~------ 247 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCL-----THMETFAIYELEDGS--EE------ 247 (376)
T ss_pred EEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEE-----EccCceeEEEccCCC--hh------
Confidence 99999 99999999875431 21222344458899998887 233331 134444444443322 11
Q ss_pred ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCC
Q 005315 399 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 478 (702)
Q Consensus 399 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 478 (702)
.|.+.....+.... . . .....+.......++..+++++++. +
T Consensus 248 -------~~~~~~~~~~~d~r--~-----------~----------------~~~dY~I~~~~~~~~~~~~l~g~~~--n 289 (376)
T KOG1188|consen 248 -------TWLENPDVSADDLR--K-----------E----------------DNCDYVINEHSPGDKDTCALAGTDS--N 289 (376)
T ss_pred -------hcccCccchhhhHH--h-----------h----------------hhhhheeecccCCCcceEEEecccc--C
Confidence 11111111100000 0 0 0011111111122445566665542 2
Q ss_pred eEEEEEeecccCcCceEEEEEcCCC---ceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 479 DISFYSMRTAQHAGRVSKLTTLKGK---QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
...++-+...........+..+.++ -|.++.|...+.++++|+. ||.|.+|..+
T Consensus 290 ~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE---DG~l~~Wk~~ 346 (376)
T KOG1188|consen 290 KGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE---DGLLQAWKVE 346 (376)
T ss_pred ceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC---CceEEEEecC
Confidence 5666666432111112244445543 4688999999999999998 9999999863
No 230
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=2e-10 Score=110.39 Aligned_cols=269 Identities=12% Similarity=0.194 Sum_probs=175.5
Q ss_pred EEEEec---CCeEEEEecCCc--ccc-cceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc--eeee
Q 005315 323 YFAKLG---KNMISVYETESF--TLI-DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQ 394 (702)
Q Consensus 323 ~la~~~---d~~i~v~d~~~~--~~~-~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~ 394 (702)
|+.+.. +..|.+|++.+. ++- .......+..+-++|+|+.++|.+..... ..+.+..+.++..+++ .+..
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~--~~ggvaay~iD~~~G~Lt~ln~ 83 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG--EEGGVAAYRIDPDDGRLTFLNR 83 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC--CcCcEEEEEEcCCCCeEEEeec
Confidence 445544 678999998732 211 12224556788999999999887743321 2333333444433232 2333
Q ss_pred eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc----------eeEEEEeeC
Q 005315 395 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK----------IIAFAWEPK 464 (702)
Q Consensus 395 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~----------v~~~~~sp~ 464 (702)
........|.++.+++|++|+++.-.. +.+.++.++..+.....+.+..|.+. ++...+.|+
T Consensus 84 ~~~~g~~p~yvsvd~~g~~vf~AnY~~--------g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~ 155 (346)
T COG2706 84 QTLPGSPPCYVSVDEDGRFVFVANYHS--------GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD 155 (346)
T ss_pred cccCCCCCeEEEECCCCCEEEEEEccC--------ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence 333333447788999999999876542 34788888877666555555456655 889999999
Q ss_pred CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCC--cce--e
Q 005315 465 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE--LET--M 540 (702)
Q Consensus 465 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~--~~~--~ 540 (702)
++++++..-.. ..|.+|++..+.... ......-++..-..|.|+|+|++..+.+. .+++|.+|..+. ++. +
T Consensus 156 ~~~l~v~DLG~--Dri~~y~~~dg~L~~-~~~~~v~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 156 GRYLVVPDLGT--DRIFLYDLDDGKLTP-ADPAEVKPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred CCEEEEeecCC--ceEEEEEcccCcccc-ccccccCCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEe
Confidence 99999886532 279999998544220 11111122445688999999999988775 489999999875 222 2
Q ss_pred ee--------cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec--cceeeee-----ccccEeeEEEeeCCCCCC
Q 005315 541 AT--------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN--GKLLYRT-----LKDHFFQFLWRPRPPSFL 605 (702)
Q Consensus 541 ~~--------~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~--g~~l~~~-----~~~~i~~~~w~p~~~~l~ 605 (702)
.. ........+..+||||||.++... .+.|.+|.++ +..+... +......|.+.|.+++|+
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg----~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG----HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCC----CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 21 122456789999999999888764 5688888876 4433322 113367899999999988
Q ss_pred ChhhH
Q 005315 606 TPEKE 610 (702)
Q Consensus 606 s~~~d 610 (702)
.+.++
T Consensus 307 aa~q~ 311 (346)
T COG2706 307 AANQK 311 (346)
T ss_pred EEccC
Confidence 76654
No 231
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.3e-10 Score=121.99 Aligned_cols=208 Identities=12% Similarity=0.001 Sum_probs=128.0
Q ss_pred eEEEecCCCCCCCcccccCCCcccceEEECCCCcE-EEEEeCC-c---eEEeecCcCcceeeeecCCC-eeEEEecCCCC
Q 005315 183 TEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTY-LATVHRQ-G---AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEK 256 (702)
Q Consensus 183 ~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~-lat~~~~-~---i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg~ 256 (702)
...+|-.+..+.-...+.... .....+|||||+. +++.+.. + |.++|+. +++...-...++ .....|||||+
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~-tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY-TGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred cceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECC-CCcEEEEecCCCcEEeeEECCCCC
Confidence 344665544444334344443 6778999999985 6654443 2 7788988 554433333333 66788999999
Q ss_pred EEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCc-ccccCCCCCCCCcccceEEEcCCCCcEEEEecC--C--e
Q 005315 257 YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGK--N--M 331 (702)
Q Consensus 257 ~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d--~--~ 331 (702)
.|+...... ++..|.++|+.++...+ +..+.. .. ...|+| ||+.|+..++ + .
T Consensus 246 ~la~~~~~~-------g~~~Iy~~dl~~g~~~~-LT~~~~~d~--------------~p~~SP-DG~~I~F~Sdr~g~~~ 302 (419)
T PRK04043 246 KLLLTMAPK-------GQPDIYLYDTNTKTLTQ-ITNYPGIDV--------------NGNFVE-DDKRIVFVSDRLGYPN 302 (419)
T ss_pred EEEEEEccC-------CCcEEEEEECCCCcEEE-cccCCCccC--------------ccEECC-CCCEEEEEECCCCCce
Confidence 887655431 12679999987776443 433322 22 458999 9998888773 2 6
Q ss_pred EEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCC--CCCcEEEEEecCCcceeeeeeecccccceeEEcc
Q 005315 332 ISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG--NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 409 (702)
Q Consensus 332 i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 409 (702)
|.++++.++.... +...+.....|||+|+.|++........ .+...|+++++....... .+.. .......|+|
T Consensus 303 Iy~~dl~~g~~~r---lt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SP 377 (419)
T PRK04043 303 IFMKKLNSGSVEQ---VVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSS 377 (419)
T ss_pred EEEEECCCCCeEe---CccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECC
Confidence 7777887665422 1111223458999999999854322000 033688888877654321 1111 1233578999
Q ss_pred CCCEEEEEEcc
Q 005315 410 SGDYLAVKVDR 420 (702)
Q Consensus 410 ~g~~l~~~~~~ 420 (702)
||+.+++....
T Consensus 378 DG~~I~f~~~~ 388 (419)
T PRK04043 378 DGGSIMFIKYL 388 (419)
T ss_pred CCCEEEEEEcc
Confidence 99999988765
No 232
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.40 E-value=5e-11 Score=109.94 Aligned_cols=196 Identities=12% Similarity=0.213 Sum_probs=131.3
Q ss_pred CccccccccCCCCCceEEEEeC---C----ceEEEecCCCCCCC--------cccc-cCCCcccceEEECCCCcEEEEEe
Q 005315 159 GENLQKWLTDEKARDQFVIRSG---T----DTEVLWNDARHLKP--------EPVY-KRSYWTESFVQWSPLGTYLATVH 222 (702)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~w~~~~~~~~--------~~~~-~~~~~~v~~v~~Spdg~~lat~~ 222 (702)
.+.+......|..+..++..+. + ....+|+++....+ +..+ +.+.+.+.||-|-|++..||+..
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 3445555556655555544332 2 23349998755444 1122 24556899999999999999999
Q ss_pred CCceEEeecCcCcceeeeec-------CCCeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccC
Q 005315 223 RQGAAVWGGANTFNRLMRYA-------HPQVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG 293 (702)
Q Consensus 223 ~~~i~iw~~~~~~~~~~~~~-------~~~v~~i~fSp--dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~ 293 (702)
.+.|.+|+...+.+.+..+. ....++-+||| +|..+++.+.. ++..||++|.++...+..
T Consensus 143 dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~-----------tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 143 DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDS-----------TLQFWDLRTMKKNNSIED 211 (370)
T ss_pred cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCC-----------cEEEEEccchhhhcchhh
Confidence 88899999983333233332 11377889999 78888887654 899999999887666654
Q ss_pred CC-cccccCCCCCCCCcccceEEEcCCCCc-EEEEec-CCeEEEEecCCcc-cccceeeccCCeeEEEeCCCCCeEEEEe
Q 005315 294 SA-DEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDFSWSPTDPIISLFV 369 (702)
Q Consensus 294 ~~-~~~~~~~~~~~~~~~w~~~~~s~~dg~-~la~~~-d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~sp~~~~la~~~ 369 (702)
.. ..+. .+.|+| +.+ +|++++ |+.|+|||.+.-+ .+.....|..-|.++.|+|.-..|+..
T Consensus 212 AHgq~vr-------------dlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs- 276 (370)
T KOG1007|consen 212 AHGQRVR-------------DLDFNP-NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS- 276 (370)
T ss_pred hhcceee-------------eccCCC-CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe-
Confidence 33 2221 578899 665 677888 9999999988443 444455666779999999985544431
Q ss_pred ecCCCCCCCcEEEE
Q 005315 370 PELGGGNQPARVSL 383 (702)
Q Consensus 370 ~~~~~~~~~~~i~~ 383 (702)
+|.|..+.++.
T Consensus 277 ---~~SDs~V~Lsc 287 (370)
T KOG1007|consen 277 ---GGSDSAVNLSC 287 (370)
T ss_pred ---cCCCceeEEEe
Confidence 55665555544
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=3.6e-09 Score=109.22 Aligned_cols=279 Identities=13% Similarity=0.166 Sum_probs=162.0
Q ss_pred cccceEEECCCCcEEEEEeCC----c-eEEeecCc---CcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005315 204 WTESFVQWSPLGTYLATVHRQ----G-AAVWGGAN---TFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~----~-i~iw~~~~---~~~~~~~~~~~--~v~~i~fSpdg~~l~t~s~d~~~~~~~~~ 273 (702)
..-+.++++|++++|.+.... + |..|.+.. +...+.+.... ....++++|++++|+++....
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~-------- 108 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG-------- 108 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT--------
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC--------
Confidence 345789999999999998773 3 76776652 23444444422 367899999999999988641
Q ss_pred ccEEEEEEccC-CcEEeec--cCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcc--cccce
Q 005315 274 RVVINIFDVRT-GKVMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFT--LIDKK 346 (702)
Q Consensus 274 ~~~i~vwd~~~-g~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~--~~~~~ 346 (702)
+.|.++++.. |...... ..+...- .....+.+-+-.++.|+| |+++++... ...|.+|++.... +....
T Consensus 109 -g~v~v~~l~~~g~l~~~~~~~~~~g~g--~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 109 -GSVSVFPLDDDGSLGEVVQTVRHEGSG--PNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp -TEEEEEEECTTSEEEEEEEEEESEEEE--SSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred -CeEEEEEccCCcccceeeeecccCCCC--CcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 8899999976 4432221 1110000 000001111111689999 999888776 7789999987654 32211
Q ss_pred ee---ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc--eeeeeeec----c--cccceeEEccCCCEEE
Q 005315 347 SL---KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLF----S--VSDCKMYWQSSGDYLA 415 (702)
Q Consensus 347 ~~---~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~----~--~~~~~~~~s~~g~~l~ 415 (702)
.+ ...+.+.+.|+|+++++.+. ...++.+.++.++..... .+...... . .....+..+|+|++|+
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~----~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVV----NELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY 260 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEE----ETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred ccccccCCCCcEEEEcCCcCEEEEe----cCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE
Confidence 11 22357899999999987663 113444444444422332 22211111 1 1344578899999999
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEE-ecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCce
Q 005315 416 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE-LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 494 (702)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 494 (702)
+..... ..+.+|.++.....+..+. ++......+.|+++|+|++|+++..+.. .|.+|++....+. +
T Consensus 261 vsnr~~--------~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~--~v~vf~~d~~tG~--l 328 (345)
T PF10282_consen 261 VSNRGS--------NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN--TVSVFDIDPDTGK--L 328 (345)
T ss_dssp EEECTT--------TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT--EEEEEEEETTTTE--E
T ss_pred EEeccC--------CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC--eEEEEEEeCCCCc--E
Confidence 876542 2378899965433333332 3222445889999999999999987553 8999998644432 2
Q ss_pred EEEE-EcCCCceeEEEE
Q 005315 495 SKLT-TLKGKQANALFW 510 (702)
Q Consensus 495 ~~~~-~~~~~~v~~~~~ 510 (702)
..+. .+......|+.|
T Consensus 329 ~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 329 TPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEESSSEEEEEE
T ss_pred EEecccccCCCCEEEeC
Confidence 2322 133334555554
No 234
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1e-10 Score=105.25 Aligned_cols=258 Identities=14% Similarity=0.190 Sum_probs=166.2
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----------cEEeeccCCCcccccCCCCCCCCcccc
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----------KVMRDFKGSADEFAVGGTGGVAGVSWP 312 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~w~ 312 (702)
+..|..-+|||.++||+.|+.+ |.|.+..+.+- ..+-.+++|..++.
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~----------G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy------------- 66 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLF----------GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIY------------- 66 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCC----------CeEEEEEehhhhccccCCCCCcceeeccccCCCee-------------
Confidence 3346777899999999999999 99999987432 22344455655542
Q ss_pred eEEEcCCCCcEEEEecCCeEEEEecCCccc-cc-----ce-------eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCc
Q 005315 313 VFRWGGGKDKYFAKLGKNMISVYETESFTL-ID-----KK-------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPA 379 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~d~~i~v~d~~~~~~-~~-----~~-------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~ 379 (702)
.++|. +.+|.+++||.|+=|.-..+.. .. .. ....+.|+.+...|..+.|.+ ++ +..
T Consensus 67 ~~~f~---d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-----Ag--GD~ 136 (325)
T KOG0649|consen 67 YLAFH---DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-----AG--GDG 136 (325)
T ss_pred eeeee---hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-----ec--CCe
Confidence 45664 4688889999999887553321 00 00 122344666667766665555 32 333
Q ss_pred EEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEE
Q 005315 380 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF 459 (702)
Q Consensus 380 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~ 459 (702)
.++.+++.+++ -+..+.+|.+.|+++
T Consensus 137 ~~y~~dlE~G~------------------------------------------------------i~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 137 VIYQVDLEDGR------------------------------------------------------IQREYRGHTDYVHSV 162 (325)
T ss_pred EEEEEEecCCE------------------------------------------------------EEEEEcCCcceeeee
Confidence 33333332211 114466999999999
Q ss_pred EEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC---------CceeEEEEccCCCEEEEEeccCCCceEE
Q 005315 460 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG---------KQANALFWSPSGRFIVLAGLKGFNGQLE 530 (702)
Q Consensus 460 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~---------~~v~~~~~spdg~~l~~~~~~~~dg~v~ 530 (702)
+--.....+.+++.|| ++++||.++++.. ..+..... ..|. +..-+..++++++ .-.+.
T Consensus 163 v~R~~~~qilsG~EDG---tvRvWd~kt~k~v---~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGg----Gp~ls 230 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDG---TVRVWDTKTQKHV---SMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGG----GPKLS 230 (325)
T ss_pred eecccCcceeecCCCc---cEEEEecccccee---EEeccccChhhcCcccCceeE--EEeccCceEEecC----CCcee
Confidence 8855566788999999 9999999877632 11111111 1233 3444566888887 46899
Q ss_pred EEECCCcceeeeccc-CceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeeecc--ccEeeEEEeeCCCCCCC
Q 005315 531 FYNVDELETMATAEH-FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK--DHFFQFLWRPRPPSFLT 606 (702)
Q Consensus 531 i~d~~~~~~~~~~~~-~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~~--~~i~~~~w~p~~~~l~s 606 (702)
+|.+...+......- ..+..+.|..| .+++++. .+.+.-|.+.|.+....+. ...+...|+-.+-.++|
T Consensus 231 lwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~-----g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s 302 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGE-----GNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFIS 302 (325)
T ss_pred EEeccCCCceEEEecccceeEeeeecc--eEEEecc-----ccceeeeeeccEEEEeccCCccceeeecccCCceEEEE
Confidence 999998777665433 55667777654 5777776 5899999999987666544 45666777766644443
No 235
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=7.2e-12 Score=124.97 Aligned_cols=161 Identities=16% Similarity=0.275 Sum_probs=114.7
Q ss_pred CCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec---CCCeeEEEecCC--CCEEEEEcCCCC
Q 005315 193 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA---HPQVKLIDFSPG--EKYLVTYSSHEP 266 (702)
Q Consensus 193 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~---~~~v~~i~fSpd--g~~l~t~s~d~~ 266 (702)
......++||+++|+|+.|+.+|.+||+|+.|. +.|||.- ..++++.++ ..+|.++.|-|- .+.+++|+.|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD-- 116 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD-- 116 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecch-hcceeeeeecccccceeEEeeeccCCCeEEEeccCc--
Confidence 445667899999999999999999999999998 9999998 777777663 335999999994 5789999999
Q ss_pred CCCcCCCccEEEEEEccCC----------cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC-cEEEEec-CCeEEE
Q 005315 267 SNPRDANRVVINIFDVRTG----------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISV 334 (702)
Q Consensus 267 ~~~~~~~~~~i~vwd~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg-~~la~~~-d~~i~v 334 (702)
..|+++|+... ...+.+..|...+. .++-.| ++ ..+-+++ ||+|+-
T Consensus 117 --------k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVK-------------ria~~p-~~PhtfwsasEDGtirQ 174 (758)
T KOG1310|consen 117 --------KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVK-------------RIATAP-NGPHTFWSASEDGTIRQ 174 (758)
T ss_pred --------ceEEEEecccccccccccCccchhhhhhhhhhhhh-------------heecCC-CCCceEEEecCCcceee
Confidence 89999998642 22344444544331 345556 65 5666777 999999
Q ss_pred EecCCccccc----------ceeeccCCeeEEEeCCCCC-eEEEEeecCCCCCCCcEEEE
Q 005315 335 YETESFTLID----------KKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSL 383 (702)
Q Consensus 335 ~d~~~~~~~~----------~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~ 383 (702)
||+.....-. ......-...++..+|... +|++ |+.+-.++++.
T Consensus 175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laV-----GgsdpfarLYD 229 (758)
T KOG1310|consen 175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAV-----GGSDPFARLYD 229 (758)
T ss_pred ecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEe-----cCCCchhhhhh
Confidence 9987522110 0111112367899999865 5666 66666666543
No 236
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.39 E-value=2.4e-11 Score=116.68 Aligned_cols=184 Identities=18% Similarity=0.276 Sum_probs=134.9
Q ss_pred CCceEEEEeCCc-eEEEecCCCCC------CCcccccCCCcccceEEECCCC-cEEEEEeCCc-eEEeecCcCcceeeee
Q 005315 171 ARDQFVIRSGTD-TEVLWNDARHL------KPEPVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFNRLMRY 241 (702)
Q Consensus 171 ~~~~~~~~~~~~-~~~~w~~~~~~------~~~~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~~~~~~ 241 (702)
-+|+.+.+++++ ++.+|..+..+ +|...+.+|...|.-|+|+|.- ..|++++.|. |.||++. +++.+.++
T Consensus 92 fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~-tgeali~l 170 (472)
T KOG0303|consen 92 FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG-TGEALITL 170 (472)
T ss_pred cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc-CCceeeec
Confidence 445666666655 55599986433 4566789999999999999975 4677777776 7899999 88888888
Q ss_pred cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 242 AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 242 ~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
.|++ |+++.|+.||.+|+|.+.| ..|+|||.++|+.+..-.+|.+... ....|-. +
T Consensus 171 ~hpd~i~S~sfn~dGs~l~TtckD----------KkvRv~dpr~~~~v~e~~~heG~k~------------~Raifl~-~ 227 (472)
T KOG0303|consen 171 DHPDMVYSMSFNRDGSLLCTTCKD----------KKVRVIDPRRGTVVSEGVAHEGAKP------------ARAIFLA-S 227 (472)
T ss_pred CCCCeEEEEEeccCCceeeeeccc----------ceeEEEcCCCCcEeeecccccCCCc------------ceeEEec-c
Confidence 8887 9999999999999999999 8999999999999988877765431 1457888 8
Q ss_pred CcEEEEec----CCeEEEEecCCcccc-cceee-ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEE
Q 005315 321 DKYFAKLG----KNMISVYETESFTLI-DKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVS 382 (702)
Q Consensus 321 g~~la~~~----d~~i~v~d~~~~~~~-~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 382 (702)
|+++.++- +.++.+|+......- .-..+ ...+|.---|.|+.+.|... |.+|+.++.+
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~----GKGD~~IRYy 291 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC----GKGDSSIRYF 291 (472)
T ss_pred CceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE----ecCCcceEEE
Confidence 88665553 678999997754321 11111 23456666778887776653 3355555543
No 237
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.39 E-value=1.3e-10 Score=111.15 Aligned_cols=235 Identities=13% Similarity=0.229 Sum_probs=156.7
Q ss_pred eEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCccee
Q 005315 313 VFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 392 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (702)
.+.|.. +...|+.++....++|.................|...-||. .++|+ .+.+++-++.+++......+
T Consensus 10 ~~~~Nq-d~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvai-----V~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 10 FIGFNQ-DSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAI-----VSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred eeeecc-ceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEE-----EecCCCceEEEEEcccCceE
Confidence 456888 88888888866678888776544322211111244455553 56666 44556666777777666655
Q ss_pred eeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEE
Q 005315 393 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 472 (702)
Q Consensus 393 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 472 (702)
.... +......+..+ -++|++.-... +.+|+++....--.....+.+...+.+++.++.+.++|+-+
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~----------IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~ 148 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES----------IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPG 148 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc----------EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecC
Confidence 5544 33333333333 34555554432 58888876432211122334566677888888888998865
Q ss_pred cCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEEEEccCCCEEEEEeccCCCce-EEEEECCCcceeeeccc----
Q 005315 473 GDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQ-LEFYNVDELETMATAEH---- 545 (702)
Q Consensus 473 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~dg~-v~i~d~~~~~~~~~~~~---- 545 (702)
... ...|.+||+.+-. ++..+.. +++-+++|||+|.+||+++. .|+ |++|.+.+++.+.....
T Consensus 149 s~t-~GdV~l~d~~nl~------~v~~I~aH~~~lAalafs~~G~llATASe---KGTVIRVf~v~~G~kl~eFRRG~~~ 218 (391)
T KOG2110|consen 149 STT-SGDVVLFDTINLQ------PVNTINAHKGPLAALAFSPDGTLLATASE---KGTVIRVFSVPEGQKLYEFRRGTYP 218 (391)
T ss_pred CCC-CceEEEEEcccce------eeeEEEecCCceeEEEECCCCCEEEEecc---CceEEEEEEcCCccEeeeeeCCcee
Confidence 421 1289999985433 5555554 47999999999999999997 665 69999999998876433
Q ss_pred CceeeeEECCCCCEEEEEEeecccccccEEEEEeccce
Q 005315 546 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL 583 (702)
Q Consensus 546 ~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~ 583 (702)
..|.+++|+|++++|++.+. .++|.||.+....
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~-----TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSN-----TETVHIFKLEKVS 251 (391)
T ss_pred eEEEEEEECCCCCeEEEecC-----CCeEEEEEecccc
Confidence 46779999999999999998 7999999987443
No 238
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=5.9e-11 Score=113.62 Aligned_cols=279 Identities=13% Similarity=0.221 Sum_probs=177.2
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc------CCcEEeeccCCC-cccccCCCCCCCCcccceE
Q 005315 243 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR------TGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 243 ~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~------~g~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~ 314 (702)
|.+ |..|.||.++++||+|+.| ..++||++. +.+++.....|. ..+ + |+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD----------~~~~~W~~de~~~~k~~KPI~~~~~~H~SNI------------F-~L 111 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDD----------MHGRVWNVDELMVRKTPKPIGVMEHPHRSNI------------F-SL 111 (609)
T ss_pred hccccceeeeccCCeEEeecCCc----------ceeeeechHHHHhhcCCCCceeccCccccce------------E-EE
Confidence 444 9999999999999999999 899999973 334444444333 222 1 78
Q ss_pred EEcCCCCcEEEEec-CCeEEEEecCCcccccceee--ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc-
Q 005315 315 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE- 390 (702)
Q Consensus 315 ~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~- 390 (702)
.|.. ...++.+++ +++|...|+.+.+.+..... ..+.|..+..+|.++.+++ .+.++ +|.+|++....
T Consensus 112 ~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~-----~t~~~--~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 112 EFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIV-----VTRAK--LVSFIDNRDRQN 183 (609)
T ss_pred EEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEE-----EecCc--eEEEEeccCCCC
Confidence 9988 788888888 99999999998876654322 2236999999999999998 33443 55566654433
Q ss_pred ---eeeeeeecccccceeEEccCCCEEEE-EEcccccccccccccEEEEEEecCCcceeEEE----ecCCCCceeEEEEe
Q 005315 391 ---ELRQKNLFSVSDCKMYWQSSGDYLAV-KVDRYTKTKKSTYTGFELFRIKERDIPIEVLE----LDNKNDKIIAFAWE 462 (702)
Q Consensus 391 ---~~~~~~~~~~~~~~~~~s~~g~~l~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----l~~h~~~v~~~~~s 462 (702)
++...+ ....-....|+|....|+. ....+ +..+|+++....++.... ++.....-.+..|+
T Consensus 184 ~~~~~~~AN-~~~~F~t~~F~P~~P~Li~~~~~~~---------G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 184 PISLVLPAN-SGKNFYTAEFHPETPALILVNSETG---------GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS 253 (609)
T ss_pred CCceeeecC-CCccceeeeecCCCceeEEeccccC---------CCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence 111111 1111122347776654444 33322 367888876554432221 21111222567899
Q ss_pred eCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC-------CceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 463 PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG-------KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 463 p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
|+|+.|.+.-... .-.+||+.+.. |-.++.-+. ..+.+++|.-|- .+++|+. +-.|++|.+.
T Consensus 254 ~~G~Q~msiRR~~---~P~~~D~~S~R----~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD---~~~i~~WklP 322 (609)
T KOG4227|consen 254 PSGNQFMSIRRGK---CPLYFDFISQR----CFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSD---HWGIHIWKLP 322 (609)
T ss_pred CCCCeehhhhccC---CCEEeeeeccc----ceeEeccCCCCcceeeeeeeeeeeecce-eeeccCc---ccceEEEecC
Confidence 9999988776544 34567775422 112222111 134567776554 3777776 7889999885
Q ss_pred C------------------------cce-eeecccCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 536 E------------------------LET-MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 536 ~------------------------~~~-~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
. +.. +..+|..-++.+.|+|....|++++- .+.++||.
T Consensus 323 ~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV-----E~~~KlWS 385 (609)
T KOG4227|consen 323 RANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV-----ENSFKLWS 385 (609)
T ss_pred CCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch-----hhheeccc
Confidence 2 111 12356677889999999888888777 89999985
No 239
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.2e-10 Score=125.14 Aligned_cols=290 Identities=15% Similarity=0.221 Sum_probs=183.9
Q ss_pred ccceEEECCCCcEEEEEeC-CceEEeecCcCcceeeeecCC-----CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccE
Q 005315 205 TESFVQWSPLGTYLATVHR-QGAAVWGGANTFNRLMRYAHP-----QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVV 276 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat~~~-~~i~iw~~~~~~~~~~~~~~~-----~v~~i~fSp--dg~~l~t~s~d~~~~~~~~~~~~ 276 (702)
.-..+.|+|-...++++.. +.|.|||.+ ....+..|+.. .|+.+.+-. |...|++++.| |.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e-~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d----------Gv 1134 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWE-KGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD----------GV 1134 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecc-cCceeccccCCCCCCCccceeeeecccchhheeeeccC----------ce
Confidence 4557888998889998884 458999999 88888887533 488888765 34689999999 99
Q ss_pred EEEEEcc-C----CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccC
Q 005315 277 INIFDVR-T----GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVE 351 (702)
Q Consensus 277 i~vwd~~-~----g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~ 351 (702)
|+||+-- + .+++..+.+-.+... +..+.. ..+.|-.+.|.++++|.-..|+|||+..-.++........
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~-----~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLP-----GARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred EEEecccccccCCceeEEeeccccccCc-----cCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence 9999742 2 233444433222110 111111 1567877345555555578999999986554433222211
Q ss_pred -CeeEEEeCC-CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccc
Q 005315 352 -NVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 429 (702)
Q Consensus 352 -~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 429 (702)
.|+.++-+- .|+.|+. |.+|+.++++....+...
T Consensus 1209 t~vTaLS~~~~~gn~i~A-----GfaDGsvRvyD~R~a~~d--------------------------------------- 1244 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAA-----GFADGSVRVYDRRMAPPD--------------------------------------- 1244 (1387)
T ss_pred ccceeecccccCCceEEE-----eecCCceEEeecccCCcc---------------------------------------
Confidence 233333221 2456665 556666665544332211
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCc--eeEEEEeeCCcE-EEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCce
Q 005315 430 TGFELFRIKERDIPIEVLELDNKNDK--IIAFAWEPKGHR-FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQA 505 (702)
Q Consensus 430 ~~~~l~~l~~~~~~~~~~~l~~h~~~--v~~~~~sp~g~~-l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v 505 (702)
........|+.. |..+.+.+.|-. |++++.+| .|++||++......-...+..-. +...
T Consensus 1245 --------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G---~I~~~DlR~~~~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1245 --------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG---DIQLLDLRMSSKETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred --------------ccceeecccCCcccceeEEeecCCCcceeeeccCC---eEEEEecccCcccccceeeeccccCccc
Confidence 000111234444 888888887755 99999999 99999998632111111222222 3358
Q ss_pred eEEEEccCCCEEEEEeccCCCceEEEEECCCcceee--------ecccCceeeeEECCCCCEEEEEEeecccccccEEEE
Q 005315 506 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIW 577 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~--------~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw 577 (702)
+++..+++...+|+|+ .+.|.||++...++.. ....+.+++++|+|---.+|+|+. |+.|.||
T Consensus 1308 Tal~VH~hapiiAsGs----~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~-----Ds~V~iY 1378 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIASGS----AQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA-----DSTVSIY 1378 (1387)
T ss_pred eeeeeccCCCeeeecC----cceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccC-----CceEEEe
Confidence 9999999999999987 4899999998433221 122356789999999888999988 9999999
Q ss_pred Eecc
Q 005315 578 SFNG 581 (702)
Q Consensus 578 ~~~g 581 (702)
....
T Consensus 1379 s~~k 1382 (1387)
T KOG1517|consen 1379 SCEK 1382 (1387)
T ss_pred ecCC
Confidence 8653
No 240
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=5e-11 Score=112.68 Aligned_cols=266 Identities=14% Similarity=0.219 Sum_probs=166.3
Q ss_pred cEEEEEeCCc-eEEeecCcCcceeeeec-CC-CeeEEEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEee
Q 005315 216 TYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 290 (702)
Q Consensus 216 ~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~fSpd--g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~ 290 (702)
+.+|++..+| |+|||.. +++.+..|. ++ .+..+.|..+ ..-+.+++.| |+|++||+++......
T Consensus 41 ~~vav~lSngsv~lyd~~-tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD----------G~Vr~wD~Rs~~e~a~ 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG-TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD----------GTVRLWDIRSQAESAR 109 (376)
T ss_pred eeEEEEecCCeEEEEecc-chhhhheecCCCCcccceEEecCCCCCeeEEeccC----------CeEEEEEeecchhhhh
Confidence 6788887777 9999999 788777774 33 3788888773 5678899999 9999999988765444
Q ss_pred cc--CCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-----CCeEEEEecCCccc-ccce-eeccCCeeEEEeCCC
Q 005315 291 FK--GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-----KNMISVYETESFTL-IDKK-SLKVENVMDFSWSPT 361 (702)
Q Consensus 291 ~~--~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-----d~~i~v~d~~~~~~-~~~~-~~~~~~v~~~~~sp~ 361 (702)
+. ++.... +.++.-.. .++.++++. +-.|.+||++..+. +... ..|...|+++.|+|.
T Consensus 110 ~~~~~~~~~~------------f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 110 ISWTQQSGTP------------FICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred eeccCCCCCc------------ceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence 33 333111 22566665 678888876 56799999987655 4332 247778999999998
Q ss_pred CC-eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecC
Q 005315 362 DP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 440 (702)
Q Consensus 362 ~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 440 (702)
+. .|++ |+.|+-+.|+....+...
T Consensus 177 ~pnlLlS-----GSvDGLvnlfD~~~d~Ee-------------------------------------------------- 201 (376)
T KOG1188|consen 177 DPNLLLS-----GSVDGLVNLFDTKKDNEE-------------------------------------------------- 201 (376)
T ss_pred CCCeEEe-----ecccceEEeeecCCCcch--------------------------------------------------
Confidence 64 5555 556655444332211000
Q ss_pred CcceeEEEecCCCCceeEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC-----------ce-eE
Q 005315 441 DIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-----------QA-NA 507 (702)
Q Consensus 441 ~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-----------~v-~~ 507 (702)
-..+..-+|...|..+.|..++ +++.+.+... +..+|+++.+.. ...+... .+ +-
T Consensus 202 ---DaL~~viN~~sSI~~igw~~~~ykrI~clTH~E---tf~~~ele~~~~------~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 202 ---DALLHVINHGSSIHLIGWLSKKYKRIMCLTHME---TFAIYELEDGSE------ETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred ---hhHHHhhcccceeeeeeeecCCcceEEEEEccC---ceeEEEccCCCh------hhcccCccchhhhHHhhhhhhhe
Confidence 0001112457778999998877 3455555555 799999976652 1111111 00 00
Q ss_pred E-EEcc-CCCEEEEEeccCCCceEEEEE---CCCcceee-----e-cccCceeeeEECCCCCEEEEEEeecccccccEEE
Q 005315 508 L-FWSP-SGRFIVLAGLKGFNGQLEFYN---VDELETMA-----T-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNI 576 (702)
Q Consensus 508 ~-~~sp-dg~~l~~~~~~~~dg~v~i~d---~~~~~~~~-----~-~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~i 576 (702)
+ ..+| ++..+++++. + -|...++- ..++.... . +|..-|.++.|...+..+.||+. ||.+.+
T Consensus 270 I~~~~~~~~~~~~l~g~-~-~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE-----DG~l~~ 342 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGT-D-SNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE-----DGLLQA 342 (376)
T ss_pred eecccCCCcceEEEecc-c-cCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC-----CceEEE
Confidence 1 1223 3445555442 1 23444433 23332221 2 24456788999999999999999 999999
Q ss_pred EEe
Q 005315 577 WSF 579 (702)
Q Consensus 577 w~~ 579 (702)
|..
T Consensus 343 Wk~ 345 (376)
T KOG1188|consen 343 WKV 345 (376)
T ss_pred Eec
Confidence 986
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=2e-10 Score=115.67 Aligned_cols=271 Identities=13% Similarity=0.088 Sum_probs=183.3
Q ss_pred CCCcccceEEECCCCcEEEEEeCCc--eEEeecCcCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQG--AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 276 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~--~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~ 276 (702)
.+....+.+..||||+||...+.-. |++||+. .....+.-|.. .|...-+|-|-..++.-..| .+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydla-nLSLKFERhlDae~V~feiLsDD~SK~v~L~~D----------R~ 117 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLA-NLSLKFERHLDAEVVDFEILSDDYSKSVFLQND----------RT 117 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcc-cceeeeeecccccceeEEEeccchhhheEeecC----------ce
Confidence 4566788999999999987766544 9999998 65555444433 37777778787777777777 66
Q ss_pred EEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEc-CCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeE
Q 005315 277 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG-GGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMD 355 (702)
Q Consensus 277 i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s-~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~ 355 (702)
|.+.. .-|.. ..+..+.... .++++ | +..+++.++...|+=+++..|..+..+....+.++.
T Consensus 118 IefHa-k~G~h-y~~RIP~~GR--------------Dm~y~~~-scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~ 180 (703)
T KOG2321|consen 118 IEFHA-KYGRH-YRTRIPKFGR--------------DMKYHKP-SCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNV 180 (703)
T ss_pred eeehh-hcCee-eeeecCcCCc--------------cccccCC-CccEEEeecCcceEEEEcccccccccccccccccee
Confidence 66543 23332 2222221111 12221 2 334555566778888999999999888778888999
Q ss_pred EEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEE
Q 005315 356 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF 435 (702)
Q Consensus 356 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~ 435 (702)
+..++-..+|++ |+.++.+..| +...+. .+....-..
T Consensus 181 v~in~~hgLla~-----Gt~~g~VEfw--DpR~ks-----------------------rv~~l~~~~------------- 217 (703)
T KOG2321|consen 181 VSINEEHGLLAC-----GTEDGVVEFW--DPRDKS-----------------------RVGTLDAAS------------- 217 (703)
T ss_pred eeecCccceEEe-----cccCceEEEe--cchhhh-----------------------hheeeeccc-------------
Confidence 999999999998 5556655533 322221 111100000
Q ss_pred EEecCCcceeEEEecCC-----CCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEE
Q 005315 436 RIKERDIPIEVLELDNK-----NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALF 509 (702)
Q Consensus 436 ~l~~~~~~~~~~~l~~h-----~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~ 509 (702)
.+.+| ...|+++.|+.+|-.+++|+..| .|.|||+++.... .+..-. .-+|..+.
T Consensus 218 ------------~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G---~v~iyDLRa~~pl----~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 218 ------------SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG---SVLIYDLRASKPL----LVKDHGYELPIKKLD 278 (703)
T ss_pred ------------ccCCCccccccCcceEEEecCCceeEEeeccCC---cEEEEEcccCCce----eecccCCccceeeec
Confidence 01111 34589999999999999999999 9999999876521 222211 33789999
Q ss_pred EccC--CCEEEEEeccCCCceEEEEECCCcceeeeccc-CceeeeEECCCCCEEEEEEe
Q 005315 510 WSPS--GRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 510 ~spd--g~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~-~~i~~~~~spdg~~l~t~s~ 565 (702)
|.+. +..+++.. ...++|||-.+++.+...+. ..++++|+-|++-.++++-.
T Consensus 279 ~~~~~~q~~v~S~D----k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 279 WQDTDQQNKVVSMD----KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred ccccCCCceEEecc----hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC
Confidence 9886 44555554 57899999999999887554 67999999999998888877
No 242
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=5.1e-10 Score=117.47 Aligned_cols=223 Identities=9% Similarity=0.055 Sum_probs=136.0
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 431 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 431 (702)
......|||+|+.+++++.- .++...||++++.+.+...-.. .........|+|||+.|++...... +
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~---~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g--------~ 256 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSY---GERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKG--------Q 256 (419)
T ss_pred CeEeEEECCCCCcEEEEEEc---cCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCC--------C
Confidence 46678999999863333211 2234589999987765332222 2222334579999999988765321 2
Q ss_pred EEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEc
Q 005315 432 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 511 (702)
Q Consensus 432 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 511 (702)
..||.++..+.... .++.+........|+|||+.|++.+.......|.++++.++.. ..+. ..+. ....||
T Consensus 257 ~~Iy~~dl~~g~~~--~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----~rlt-~~g~--~~~~~S 327 (419)
T PRK04043 257 PDIYLYDTNTKTLT--QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----EQVV-FHGK--NNSSVS 327 (419)
T ss_pred cEEEEEECCCCcEE--EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----EeCc-cCCC--cCceEC
Confidence 35666654443332 3333343345678999999999998765555788888865432 1221 1122 235899
Q ss_pred cCCCEEEEEeccCC------CceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceee
Q 005315 512 PSGRFIVLAGLKGF------NGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY 585 (702)
Q Consensus 512 pdg~~l~~~~~~~~------dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~ 585 (702)
|||++|+....... ...|.+.|+.++...............|||||+.|+..+.. .....+.+.+++|+...
T Consensus 328 PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~ 405 (419)
T PRK04043 328 TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSF 405 (419)
T ss_pred CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeE
Confidence 99999988765320 14788889887765433223334468999999999888763 11234667778886555
Q ss_pred eec--cccEeeEEE
Q 005315 586 RTL--KDHFFQFLW 597 (702)
Q Consensus 586 ~~~--~~~i~~~~w 597 (702)
... .+.+...+|
T Consensus 406 ~l~~~~g~~~~p~W 419 (419)
T PRK04043 406 LFPLKVGKIQSIDW 419 (419)
T ss_pred EeecCCCccCCCCC
Confidence 442 244444444
No 243
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.35 E-value=3.3e-10 Score=119.88 Aligned_cols=261 Identities=11% Similarity=0.119 Sum_probs=165.2
Q ss_pred cEEEEEEccCC-cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccc--ccce----
Q 005315 275 VVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL--IDKK---- 346 (702)
Q Consensus 275 ~~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~--~~~~---- 346 (702)
+.+.||++... .+-..+....... ++.|+|-+..++|.|. +|+|.+||+..+.. ....
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~--------------~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~ 287 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVT--------------CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALE 287 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCcee--------------EEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccc
Confidence 36889998765 4455555444433 7899993344555555 99999999987654 2211
Q ss_pred eeccCCeeEEEeCCCCC--eEEEEeecCCCCCCCcEEEEEecCCc---ceeeeee-------ecccccceeEEccC-CCE
Q 005315 347 SLKVENVMDFSWSPTDP--IISLFVPELGGGNQPARVSLVQIPSK---EELRQKN-------LFSVSDCKMYWQSS-GDY 413 (702)
Q Consensus 347 ~~~~~~v~~~~~sp~~~--~la~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~-------~~~~~~~~~~~s~~-g~~ 413 (702)
..|...+..+.|-.+-. -+++ ++.|+.+..|..+.-.. ....... -.......+.|.+. -..
T Consensus 288 ~sh~~~v~~vvW~~~~~~~~f~s-----~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 288 VSHSEPVTAVVWLQNEHNTEFFS-----LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred ccCCcCeEEEEEeccCCCCceEE-----EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence 23556788899976532 2555 55788877775554222 1111000 11223344556553 345
Q ss_pred EEEEEcccccccccccccEEEEEEecCCccee-------EEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEee
Q 005315 414 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIE-------VLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 486 (702)
Q Consensus 414 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-------~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 486 (702)
+++++..+. ++.....+.... ......|.++|+++.++|-+..+...++|- +|+||...
T Consensus 363 FiVGTe~G~-----------v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW---~vriWs~~ 428 (555)
T KOG1587|consen 363 FIVGTEEGK-----------VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW---TVRIWSED 428 (555)
T ss_pred EEEEcCCcE-----------EEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc---eeEecccc
Confidence 666766654 333222111111 123446889999999999888777777788 89999975
Q ss_pred cccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce--eee--cccCceeeeEECCCCCEE
Q 005315 487 TAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET--MAT--AEHFMATDVEWDPTGRYV 560 (702)
Q Consensus 487 ~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~--~~~--~~~~~i~~~~~spdg~~l 560 (702)
.... ++..+..+ .+++++|||.-.-++++.. .+|.|.|||+..... +.+ ......+.+.|+++|+.|
T Consensus 429 ~~~~-----Pl~~~~~~~~~v~~vaWSptrpavF~~~d--~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~l 501 (555)
T KOG1587|consen 429 VIAS-----PLLSLDSSPDYVTDVAWSPTRPAVFATVD--GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLL 501 (555)
T ss_pred CCCC-----cchhhhhccceeeeeEEcCcCceEEEEEc--CCCceehhhhhccccCCcccccccccccceeecCCCCcEE
Confidence 2221 44444432 4899999998765555443 289999999973222 222 234566789999999999
Q ss_pred EEEEeecccccccEEEEEec
Q 005315 561 ATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 561 ~t~s~~~~~~d~~v~iw~~~ 580 (702)
++|.. .|.+.+|++.
T Consensus 502 avGd~-----~G~~~~~~l~ 516 (555)
T KOG1587|consen 502 AVGDA-----NGTTHILKLS 516 (555)
T ss_pred EEecC-----CCcEEEEEcC
Confidence 99999 8999999875
No 244
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.34 E-value=4.8e-12 Score=110.87 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 56 SGFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 56 ~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
...++.|||+||| .+++++|+++|+.+++ ..+.|+.|..|++++|||||+|.+.++|+.|++.||+..++++ .++|.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr-~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR-HIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE-EEEEE
Confidence 3457899999999 9999999999999988 5899999999999999999999999999999999999999987 78877
Q ss_pred ec
Q 005315 134 MF 135 (702)
Q Consensus 134 ~~ 135 (702)
.-
T Consensus 110 ~a 111 (144)
T PLN03134 110 PA 111 (144)
T ss_pred eC
Confidence 53
No 245
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.3e-11 Score=123.91 Aligned_cols=252 Identities=13% Similarity=0.240 Sum_probs=162.2
Q ss_pred cccCCCcccceEEECCCCcEEEEEeCCc-eEEeecC-------cCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCC
Q 005315 198 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA-------NTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPS 267 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~-------~~~~~~~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~ 267 (702)
.+..|...++.++|.|-...|++++.++ +.+|+++ ...+++.+| .|. .|.|++.++++.++.+|+.|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D--- 365 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID--- 365 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC---
Confidence 3456788899999999999999999999 6799983 133466666 355 49999999999999999999
Q ss_pred CCcCCCccEEEEEEccCC----------cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEe
Q 005315 268 NPRDANRVVINIFDVRTG----------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYE 336 (702)
Q Consensus 268 ~~~~~~~~~i~vwd~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d 336 (702)
|+|+.|++... .....+.||.+.+ | .+.+|+ ....|++++ ||+++.|+
T Consensus 366 -------g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdav------------w-~l~~s~-~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 366 -------GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAV------------W-LLALSS-TKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred -------ceeeeeccCCCCCcccccCcchhccceeccccce------------e-eeeecc-cccceeeecCCceEEeec
Confidence 99999976421 1234556666655 7 589999 888888888 99999999
Q ss_pred cCCcccccceee--ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEE
Q 005315 337 TESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYL 414 (702)
Q Consensus 337 ~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 414 (702)
....... .+.. ..+--..+.+-.....+++ .+.. +..+.+...+.. .+
T Consensus 425 ~~~~~~~-~f~~~~e~g~Plsvd~~ss~~a~~~-------~s~~--~~~~~~~~~ev~------------------s~-- 474 (577)
T KOG0642|consen 425 PTEESPC-TFGEPKEHGYPLSVDRTSSRPAHSL-------ASFR--FGYTSIDDMEVV------------------SD-- 474 (577)
T ss_pred cCCcCcc-ccCCccccCCcceEeeccchhHhhh-------hhcc--cccccchhhhhh------------------hh--
Confidence 7754441 0100 0011122222211111111 0000 000000000000 00
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCce
Q 005315 415 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 494 (702)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 494 (702)
+.++.-.....+ .....+.-+.++|.+...+++..+. .|+++|..++.
T Consensus 475 -----------------~~~~~s~~~~~~-------~~~~~in~vVs~~~~~~~~~~hed~---~Ir~~dn~~~~----- 522 (577)
T KOG0642|consen 475 -----------------LLIFESSASPGP-------RRYPQINKVVSHPTADITFTAHEDR---SIRFFDNKTGK----- 522 (577)
T ss_pred -----------------eeeccccCCCcc-------cccCccceEEecCCCCeeEecccCC---ceecccccccc-----
Confidence 111111100000 1134566788899998888888888 89999987665
Q ss_pred EEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce
Q 005315 495 SKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 539 (702)
Q Consensus 495 ~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~ 539 (702)
++.....+ .++++++.|+|-+|++++. ||.+.+|.+....+
T Consensus 523 -~l~s~~a~~~svtslai~~ng~~l~s~s~---d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 523 -ILHSMVAHKDSVTSLAIDPNGPYLMSGSH---DGSVRLWKLDVKTC 565 (577)
T ss_pred -cchheeeccceecceeecCCCceEEeecC---Cceeehhhccchhe
Confidence 55554444 6899999999999999998 99999999874433
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=8.4e-11 Score=118.26 Aligned_cols=254 Identities=16% Similarity=0.243 Sum_probs=159.5
Q ss_pred eEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcE-------EEE
Q 005315 313 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR-------VSL 383 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~-------i~~ 383 (702)
.+..|| ||+|+.+.+ .-.|++||+....+.-...+....|.-.-++-|-..+++.. .|..+. -+.
T Consensus 56 ~ik~s~-DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~-----~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 56 RIKVSP-DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQ-----NDRTIEFHAKYGRHYR 129 (703)
T ss_pred eeEecC-CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEee-----cCceeeehhhcCeeee
Confidence 689999 999987766 88999999987655433323333344333444433333321 222221 111
Q ss_pred EecCCcceeeeeeecccccceeEEc-cCCCEEEEEEcccccccccccccEEEEEEecC-CcceeEEEecCCCCceeEEEE
Q 005315 384 VQIPSKEELRQKNLFSVSDCKMYWQ-SSGDYLAVKVDRYTKTKKSTYTGFELFRIKER-DIPIEVLELDNKNDKIIAFAW 461 (702)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~h~~~v~~~~~ 461 (702)
..+|.. . ..|.++ |....+++++. ..+|++... +.-...+.. ..+.++++..
T Consensus 130 ~RIP~~----------G--RDm~y~~~scDly~~gsg------------~evYRlNLEqGrfL~P~~~--~~~~lN~v~i 183 (703)
T KOG2321|consen 130 TRIPKF----------G--RDMKYHKPSCDLYLVGSG------------SEVYRLNLEQGRFLNPFET--DSGELNVVSI 183 (703)
T ss_pred eecCcC----------C--ccccccCCCccEEEeecC------------cceEEEEcccccccccccc--ccccceeeee
Confidence 122211 0 111222 33344444443 367777643 332223333 2478999999
Q ss_pred eeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC-------ceeEEEEccCCCEEEEEeccCCCceEEEEEC
Q 005315 462 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-------QANALFWSPSGRFIVLAGLKGFNGQLEFYNV 534 (702)
Q Consensus 462 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~ 534 (702)
++....|++|+.+| .|.+||.+.......+....++..+ .|+++.|+.+|-.+++|+. +|.+.|||+
T Consensus 184 n~~hgLla~Gt~~g---~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---~G~v~iyDL 257 (703)
T KOG2321|consen 184 NEEHGLLACGTEDG---VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---TGSVLIYDL 257 (703)
T ss_pred cCccceEEecccCc---eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---CCcEEEEEc
Confidence 99999999999899 9999999876543323222232212 3899999999999999998 999999999
Q ss_pred CCcceeeec-cc--CceeeeEECCC--CCEEEEEEeecccccccEEEEEec-cceeeee-ccccEeeEEEeeCCCCCCCh
Q 005315 535 DELETMATA-EH--FMATDVEWDPT--GRYVATAVTSVHEMENGFNIWSFN-GKLLYRT-LKDHFFQFLWRPRPPSFLTP 607 (702)
Q Consensus 535 ~~~~~~~~~-~~--~~i~~~~~spd--g~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~-~~~~i~~~~w~p~~~~l~s~ 607 (702)
...+.+... |. .+|..+.|-+. +..|++... ..++||+-. |+..... ....+..+++-|++-.++++
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk------~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK------RILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEecch------HHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 977766543 32 57889999776 345666554 789999965 6665544 34568888888887776665
Q ss_pred hhH
Q 005315 608 EKE 610 (702)
Q Consensus 608 ~~d 610 (702)
-+.
T Consensus 332 ne~ 334 (703)
T KOG2321|consen 332 NES 334 (703)
T ss_pred cCC
Confidence 443
No 247
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.33 E-value=3.7e-11 Score=109.48 Aligned_cols=289 Identities=13% Similarity=0.146 Sum_probs=169.4
Q ss_pred eecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcc-cccCCCCCCCCcccceEEEcC
Q 005315 240 RYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE-FAVGGTGGVAGVSWPVFRWGG 318 (702)
Q Consensus 240 ~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~s~ 318 (702)
+-++..|+++.|-.+++ |.+|... |.|++|++.+...+..+..+... ++ .+.--|
T Consensus 11 Rp~~~~v~s~~fqa~~r-L~sg~~~----------G~V~~w~lqt~r~~~~~r~~g~~~it-------------~lq~~p 66 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER-LMSGLSV----------GIVKMWVLQTERDLPLIRLFGRLFIT-------------NLQSIP 66 (323)
T ss_pred ccccchheehhhccchh-hhccccc----------ceEEEEEeecCccchhhhhhccceee-------------ceeecC
Confidence 33455699999988876 8888888 99999999999888888744333 21 345566
Q ss_pred CCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec
Q 005315 319 GKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 398 (702)
Q Consensus 319 ~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 398 (702)
++..+.-+-|..+.+|++.-...+...+ -.++++.|++.. +. .......+....+....-..+.
T Consensus 67 -~d~l~tqgRd~~L~lw~ia~s~~i~i~S---i~~nslgFCrfS--l~--------~~~k~~eqll~yp~rgsde~h~-- 130 (323)
T KOG0322|consen 67 -NDSLDTQGRDPLLILWTIAYSAFISIHS---IVVNSLGFCRFS--LV--------KKPKNSEQLLEYPSRGSDETHK-- 130 (323)
T ss_pred -CcchhhcCCCceEEEEEccCcceEEEee---eeccccccccce--ec--------cCCCcchhheecCCcccchhhh--
Confidence 6544444449999999988644332221 123334443310 00 0000001111111110000000
Q ss_pred ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEE--EEEcCC
Q 005315 399 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFA--VIHGDS 475 (702)
Q Consensus 399 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~--~~~~d~ 475 (702)
..-|... .+-..+... .+..+.+.+..|.. ++.+++ +|..+|
T Consensus 131 ---------~D~g~~t------------------qv~i~dd~~--------~~Klgsvmc~~~~~~c~s~~lllaGyEsg 175 (323)
T KOG0322|consen 131 ---------QDGGDTT------------------QVQIADDSE--------RSKLGSVMCQDKDHACGSTFLLLAGYESG 175 (323)
T ss_pred ---------hccCccc------------------eeEccCchh--------ccccCceeeeeccccccceEEEEEeccCC
Confidence 0000000 000000000 12356677777544 455443 333456
Q ss_pred CCCeEEEEEeecccCcCceE----EEEEc--CCCceeEEEEccCCCEEEEEeccCCCceEEEEECCC--cce----eeec
Q 005315 476 PRPDISFYSMRTAQHAGRVS----KLTTL--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE--LET----MATA 543 (702)
Q Consensus 476 ~~~~v~i~d~~~~~~~~~~~----~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~--~~~----~~~~ 543 (702)
.|.+||+.++.....+. ..... ...++.++.+.+.-..=++++. +..+..|+++. +.+ ..+.
T Consensus 176 ---hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga---~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 176 ---HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA---DDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred ---eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc---cccceeeeeccccCcccccceEEe
Confidence 89999998753211000 11111 1336778888765444455554 66788888862 222 2245
Q ss_pred ccCceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceee--eeccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 544 EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLY--RTLKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 544 ~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~--~~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.+..+..+...||++.+||++. |+.++||+.. .+.+. +.|.+.+.+++|+|+.+.++.+++|..|-
T Consensus 250 knpGv~gvrIRpD~KIlATAGW-----D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGW-----DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred cCCCccceEEccCCcEEeeccc-----CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 6778999999999999999999 9999999976 44444 55889999999999999999999987663
No 248
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.33 E-value=2.9e-09 Score=104.91 Aligned_cols=181 Identities=16% Similarity=0.168 Sum_probs=129.5
Q ss_pred ECC-CCcEEEEEeCCceEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCcc-EEEEEEccCCcEE
Q 005315 211 WSP-LGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV-VINIFDVRTGKVM 288 (702)
Q Consensus 211 ~Sp-dg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~-~i~vwd~~~g~~~ 288 (702)
|++ +|.++|+.+.....|.+.. .+-.+..-+..+|....++-+++-++.|..| + .+-|+|..+++..
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~-~~~~iqv~~~~~VrY~r~~~~~e~~vigt~d----------gD~l~iyd~~~~e~k 395 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPW-DGYSIQVGKKGGVRYRRIQVDPEGDVIGTND----------GDKLGIYDKDGGEVK 395 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCC-CCeeEEcCCCCceEEEEEccCCcceEEeccC----------CceEEEEecCCceEE
Confidence 554 7999999999886655554 3333333334459999999998888888888 5 7999998777654
Q ss_pred eeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEE
Q 005315 289 RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISL 367 (702)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~ 367 (702)
+ +...-+.+- .+..++ +|++++.+. ...|.++|+.+++....-....+-|.++.|||++++||+
T Consensus 396 r-~e~~lg~I~-------------av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 396 R-IEKDLGNIE-------------AVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred E-eeCCccceE-------------EEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEE
Confidence 4 433333331 689999 999999888 788999999988754322233445999999999999999
Q ss_pred EeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccc
Q 005315 368 FVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 421 (702)
Q Consensus 368 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 421 (702)
..|+ +--+..|.++++...+.....+ ....+...+|.|+|++|.+.+.+.
T Consensus 461 afP~---gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 461 AFPE---GYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred ecCc---ceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEeccc
Confidence 6663 2334457777777766554443 344555668999999998877654
No 249
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.6e-10 Score=124.11 Aligned_cols=285 Identities=15% Similarity=0.206 Sum_probs=179.9
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEE-cCCCCcEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW-GGGKDKYF 324 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-s~~dg~~l 324 (702)
...+.|+|=...|+++... -.|.|||...++.+..|..+.... ..+. .+.+ +..|..++
T Consensus 1067 pk~~~~hpf~p~i~~ad~r----------~~i~vwd~e~~~~l~~F~n~~~~~-----t~Vs-----~l~liNe~D~aLl 1126 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDR----------ERIRVWDWEKGRLLNGFDNGAFPD-----TRVS-----DLELINEQDDALL 1126 (1387)
T ss_pred CceeeecCCCceeEEcCCc----------ceEEEEecccCceeccccCCCCCC-----Cccc-----eeeeecccchhhe
Confidence 4578889988889988866 689999999999998887765332 1122 2333 22144566
Q ss_pred EEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccc
Q 005315 325 AKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 403 (702)
Q Consensus 325 a~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 403 (702)
.+++ ||.|+||+--.... .+. .-|+ +|++-...+-. ..+.. +
T Consensus 1127 Ltas~dGvIRIwk~y~~~~-~~~----eLVT--aw~~Ls~~~~~-------~r~~~-----------------------~ 1169 (1387)
T KOG1517|consen 1127 LTASSDGVIRIWKDYADKW-KKP----ELVT--AWSSLSDQLPG-------ARGTG-----------------------L 1169 (1387)
T ss_pred eeeccCceEEEeccccccc-CCc----eeEE--eeccccccCcc-------CCCCC-----------------------e
Confidence 6676 99999997431110 000 0011 22221111111 11111 2
Q ss_pred eeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEe-eCCcEEEEEEcCCCCCeEEE
Q 005315 404 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISF 482 (702)
Q Consensus 404 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i 482 (702)
-+.|..+..+|+++++-.. ++||+......- ..+.. +....|++++-+ +.|+.|++|..|| .|++
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~---------IRIWDa~~E~~~-~diP~-~s~t~vTaLS~~~~~gn~i~AGfaDG---svRv 1235 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRS---------IRIWDAHKEQVV-ADIPY-GSSTLVTALSADLVHGNIIAAGFADG---SVRV 1235 (1387)
T ss_pred eeehhhhCCeEEecCCeeE---------EEEEecccceeE-eeccc-CCCccceeecccccCCceEEEeecCC---ceEE
Confidence 2357776666666655433 678877642211 11111 223455555433 3579999999999 9999
Q ss_pred EEeecccCcCceEEEEEcCCC----ceeEEEEccCCCE-EEEEeccCCCceEEEEECCCcceee--e--c--ccC-ceee
Q 005315 483 YSMRTAQHAGRVSKLTTLKGK----QANALFWSPSGRF-IVLAGLKGFNGQLEFYNVDELETMA--T--A--EHF-MATD 550 (702)
Q Consensus 483 ~d~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~-l~~~~~~~~dg~v~i~d~~~~~~~~--~--~--~~~-~i~~ 550 (702)
||.+...... .+.....| +|..+.+.+.|-. |++++. +|.|++||++...... + . +.+ ..++
T Consensus 1236 yD~R~a~~ds---~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1236 YDRRMAPPDS---LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---DGDIQLLDLRMSSKETFLTIVAHWEYGSALTA 1309 (1387)
T ss_pred eecccCCccc---cceeecccCCcccceeEEeecCCCcceeeecc---CCeEEEEecccCcccccceeeeccccCcccee
Confidence 9997543221 22222222 3889999997755 888888 9999999998522111 1 1 123 4899
Q ss_pred eEECCCCCEEEEEEeecccccccEEEEEeccceeeee---------ccccEeeEEEeeCCCCCCChhhHHHH
Q 005315 551 VEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---------LKDHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 551 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~---------~~~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
+..+++...+|+|+. +.+.||++.|+++... ..+.+.+++|+|.-..++.+..|..|
T Consensus 1310 l~VH~hapiiAsGs~------q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSA------QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred eeeccCCCeeeecCc------ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 999999999999987 7999999999876533 23678999999998888887766443
No 250
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.32 E-value=8.3e-11 Score=110.25 Aligned_cols=227 Identities=14% Similarity=0.176 Sum_probs=158.1
Q ss_pred ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC-cceeeeeeecccccceeEEccCCCEEEEEEccccccccc
Q 005315 349 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS-KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 349 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
-.++|++.+|++|+..+|+ +..+..+.|+...... .+.....+.+......+.|+|.+..|++++.+..
T Consensus 9 ~~~pitchAwn~drt~iAv-----~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn----- 78 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAV-----SPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN----- 78 (361)
T ss_pred ccCceeeeeecCCCceEEe-----ccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-----
Confidence 3467999999999999998 5455566665555444 3455555556666667899999999999888765
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeE
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANA 507 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~ 507 (702)
-.+|.....+.=...+.+..++..++++.|+|.++.||++++-. .|.+|-++..+.=.-.+.++.-....|.+
T Consensus 79 ----ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 79 ----AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred ----ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCccccceee
Confidence 46666644433233344445599999999999999999999877 88888875432100001122222336899
Q ss_pred EEEccCCCEEEEEeccCCCceEEEEEC-----CC-------------cceeee--cccCceeeeEECCCCCEEEEEEeec
Q 005315 508 LFWSPSGRFIVLAGLKGFNGQLEFYNV-----DE-------------LETMAT--AEHFMATDVEWDPTGRYVATAVTSV 567 (702)
Q Consensus 508 ~~~spdg~~l~~~~~~~~dg~v~i~d~-----~~-------------~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~ 567 (702)
+.|+|++-.|+.|+. |+..++|.. +. ++++.. ...+.+..+.|+|+|..|+..+.
T Consensus 152 ldWhpnnVLlaaGs~---D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 152 LDWHPNNVLLAAGST---DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeccCCcceeccccc---CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 999999999999988 999998864 21 334433 34578899999999999999999
Q ss_pred ccccccEEEEEeccce--eeee--ccccEeeEEEeeC
Q 005315 568 HEMENGFNIWSFNGKL--LYRT--LKDHFFQFLWRPR 600 (702)
Q Consensus 568 ~~~d~~v~iw~~~g~~--l~~~--~~~~i~~~~w~p~ 600 (702)
|..+.+-|..+.. +... ..-+..++.|-..
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred ---CCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 9999999887652 2211 2245555666443
No 251
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.31 E-value=2e-10 Score=107.69 Aligned_cols=231 Identities=12% Similarity=0.154 Sum_probs=155.7
Q ss_pred eEEEcCCCCcEEEEec-CCeEEEEecCCcc---cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEE-ecC
Q 005315 313 VFRWGGGKDKYFAKLG-KNMISVYETESFT---LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV-QIP 387 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~-d~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~-~~~ 387 (702)
|.+|++ |+..+|.+. +..|.||...... ..+....|...|+.+.|+|..+.|++ ++.|....||.. +..
T Consensus 15 chAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvt-----cs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 15 CHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVT-----CSHDRNAYVWTQPSGG 88 (361)
T ss_pred eeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeE-----ccCCCCccccccCCCC
Confidence 789999 999999988 7799999987655 34455567778999999999999999 888888887765 333
Q ss_pred CcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCCCCceeEEEEeeCCc
Q 005315 388 SKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNKNDKIIAFAWEPKGH 466 (702)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h~~~v~~~~~sp~g~ 466 (702)
..++.....-.+.....+.|+|.++.+++++.... +.++.+...+.= +....-..+...|.+++|+|++-
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~---------isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL---------ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccE---------EEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence 33332222224445566789999999999988766 334333321100 00000113478899999999999
Q ss_pred EEEEEEcCCCCCeEEEEEee-----cccCcC------ce-EEEEEc--CCCceeEEEEccCCCEEEEEeccCCCceEEEE
Q 005315 467 RFAVIHGDSPRPDISFYSMR-----TAQHAG------RV-SKLTTL--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFY 532 (702)
Q Consensus 467 ~l~~~~~d~~~~~v~i~d~~-----~~~~~~------~~-~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~ 532 (702)
.++.++.|+ ..++|..- ...... .+ .++.++ .++.+..+.|||+|..|+..+. |+.+.+-
T Consensus 160 LlaaGs~D~---k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H---ds~v~~~ 233 (361)
T KOG1523|consen 160 LLAAGSTDG---KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH---DSTVSFV 233 (361)
T ss_pred eecccccCc---ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC---CCceEEe
Confidence 999999998 78887642 111000 00 011222 3456899999999999999998 9999999
Q ss_pred ECCCcc-eeee--cccCceeeeEECCCCCEEEEEEe
Q 005315 533 NVDELE-TMAT--AEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 533 d~~~~~-~~~~--~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
|..... .+.+ ...-+..++.|-.+... +.++.
T Consensus 234 da~~p~~~v~~~~~~~lP~ls~~~ise~~v-v~ag~ 268 (361)
T KOG1523|consen 234 DAAGPSERVQSVATAQLPLLSVSWISENSV-VAAGY 268 (361)
T ss_pred ecCCCchhccchhhccCCceeeEeecCCce-eecCC
Confidence 987543 2221 22366777788766554 44444
No 252
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.31 E-value=6.2e-12 Score=123.19 Aligned_cols=250 Identities=13% Similarity=0.212 Sum_probs=175.8
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 324 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~l 324 (702)
+.+.+.++.+|++|+.++.. |.|-.+|..++++...+....... .+.|-. +.+||
T Consensus 131 GPY~~~ytrnGrhlllgGrK----------GHlAa~Dw~t~~L~~Ei~v~Etv~--------------Dv~~LH-neq~~ 185 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRK----------GHLAAFDWVTKKLHFEINVMETVR--------------DVTFLH-NEQFF 185 (545)
T ss_pred CCeeeeecCCccEEEecCCc----------cceeeeecccceeeeeeehhhhhh--------------hhhhhc-chHHH
Confidence 57889999999999999999 999999999999988876654433 578888 99999
Q ss_pred EEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccce
Q 005315 325 AKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 404 (702)
Q Consensus 325 a~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 404 (702)
|.+..+.++|||-..-.+ +.. -....|..+.|-|-.-+|+. .+..+.+...|+..++.+...
T Consensus 186 AVAQK~y~yvYD~~GtEl-HCl-k~~~~v~rLeFLPyHfLL~~-------~~~~G~L~Y~DVS~GklVa~~--------- 247 (545)
T KOG1272|consen 186 AVAQKKYVYVYDNNGTEL-HCL-KRHIRVARLEFLPYHFLLVA-------ASEAGFLKYQDVSTGKLVASI--------- 247 (545)
T ss_pred HhhhhceEEEecCCCcEE-eeh-hhcCchhhhcccchhheeee-------cccCCceEEEeechhhhhHHH---------
Confidence 999999999999763322 111 12345888899997766665 333333333333332221111
Q ss_pred eEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEE
Q 005315 405 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 484 (702)
Q Consensus 405 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 484 (702)
....+.+..++-+|-+-.+.+|...| +|.+|.
T Consensus 248 ---------------------------------------------~t~~G~~~vm~qNP~NaVih~GhsnG---tVSlWS 279 (545)
T KOG1272|consen 248 ---------------------------------------------RTGAGRTDVMKQNPYNAVIHLGHSNG---TVSLWS 279 (545)
T ss_pred ---------------------------------------------HccCCccchhhcCCccceEEEcCCCc---eEEecC
Confidence 11145666677788887888888888 999999
Q ss_pred eecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeeccc-CceeeeEECCCCCEEE
Q 005315 485 MRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVA 561 (702)
Q Consensus 485 ~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~-~~i~~~~~spdg~~l~ 561 (702)
..... ++..+- .++|.++++.++|+|+++++. |..++|||+.....+.+... .+.+.+++|..|- ||
T Consensus 280 P~ske------PLvKiLcH~g~V~siAv~~~G~YMaTtG~---Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA 349 (545)
T KOG1272|consen 280 PNSKE------PLVKILCHRGPVSSIAVDRGGRYMATTGL---DRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LA 349 (545)
T ss_pred CCCcc------hHHHHHhcCCCcceEEECCCCcEEeeccc---ccceeEeeeccccccceeecCCCccccccccccc-ee
Confidence 86544 333333 347999999999999999998 99999999998777666444 6677889988774 33
Q ss_pred EEEeecccccccEEEEE--eccc----eeeeec--cccEeeEEEeeCC
Q 005315 562 TAVTSVHEMENGFNIWS--FNGK----LLYRTL--KDHFFQFLWRPRP 601 (702)
Q Consensus 562 t~s~~~~~~d~~v~iw~--~~g~----~l~~~~--~~~i~~~~w~p~~ 601 (702)
++. ...+.||. +.+. ..+-.| ...|..+.|.|-.
T Consensus 350 -~~~-----G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 350 -LSY-----GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE 391 (545)
T ss_pred -eec-----CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH
Confidence 333 36899995 2222 112112 2577777887743
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=9.3e-09 Score=103.30 Aligned_cols=266 Identities=12% Similarity=0.086 Sum_probs=162.3
Q ss_pred cEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-----------CCeEEEEecCCcccc
Q 005315 275 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-----------KNMISVYETESFTLI 343 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-----------d~~i~v~d~~~~~~~ 343 (702)
++|.|.|..+++.+..+.....+. ..+|| |++.|+.+. ++.|.+||+.+++.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~---------------~~~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN---------------PVVAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc---------------eeECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 579999999999998887665443 34899 998665443 588999999999887
Q ss_pred cceeec-------cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEE--------c
Q 005315 344 DKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW--------Q 408 (702)
Q Consensus 344 ~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------s 408 (702)
....+. ......+++||+|++|.+ ...+....|.++|+.+++.+....... ...-+.+ .
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V-----~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~ 164 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLF-----YQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHC 164 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEE-----ecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEe
Confidence 655432 112348999999999987 334556788999999998777655321 1111112 2
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCCCCCeEEEEEeec
Q 005315 409 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRT 487 (702)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~ 487 (702)
.||..+.+..+...+ ....+..+|+... .+ + ...+ .+++ +|+++.+... | +|.+.|+..
T Consensus 165 ~Dg~~~~v~~d~~g~---~~~~~~~vf~~~~--~~-----v--~~rP----~~~~~dg~~~~vs~e-G---~V~~id~~~ 224 (352)
T TIGR02658 165 RDGSLAKVGYGTKGN---PKIKPTEVFHPED--EY-----L--INHP----AYSNKSGRLVWPTYT-G---KIFQIDLSS 224 (352)
T ss_pred ecCceEEEEecCCCc---eEEeeeeeecCCc--cc-----c--ccCC----ceEcCCCcEEEEecC-C---eEEEEecCC
Confidence 233332222221110 0000011111000 00 0 0111 3455 7777766655 6 899999643
Q ss_pred ccCcCceEEEEEcC---------CCceeEEEEccCCCEEEEEeccC-------CCceEEEEECCCcceeeecc-cCceee
Q 005315 488 AQHAGRVSKLTTLK---------GKQANALFWSPSGRFIVLAGLKG-------FNGQLEFYNVDELETMATAE-HFMATD 550 (702)
Q Consensus 488 ~~~~~~~~~~~~~~---------~~~v~~~~~spdg~~l~~~~~~~-------~dg~v~i~d~~~~~~~~~~~-~~~i~~ 550 (702)
.... ....+..+. .....-++++|+|+.++++..+. ..+.|.++|..+++.+.... ...+..
T Consensus 225 ~~~~-~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~ 303 (352)
T TIGR02658 225 GDAK-FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDS 303 (352)
T ss_pred Ccce-ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceee
Confidence 2211 011222211 11223499999999998854221 13689999999999988754 457889
Q ss_pred eEECCCCC-EEEEEEeecccccccEEEEEec-cceeeee
Q 005315 551 VEWDPTGR-YVATAVTSVHEMENGFNIWSFN-GKLLYRT 587 (702)
Q Consensus 551 ~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~ 587 (702)
+++||||+ +|++.... ++.|.++|.. ++.+...
T Consensus 304 iavS~Dgkp~lyvtn~~----s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 304 INVSQDAKPLLYALSTG----DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEECCCCCeEEEEeCCC----CCcEEEEECcCCeEEeee
Confidence 99999999 66666632 6889999976 4455544
No 254
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.25 E-value=2.2e-09 Score=117.39 Aligned_cols=158 Identities=10% Similarity=0.066 Sum_probs=106.1
Q ss_pred ecCCCCCCCcccccCCCcccceEEECC-CCcEEEEEeCCc-eEEeecC------cCcceeeeec--CCCeeEEEecCCCC
Q 005315 187 WNDARHLKPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGA------NTFNRLMRYA--HPQVKLIDFSPGEK 256 (702)
Q Consensus 187 w~~~~~~~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~------~~~~~~~~~~--~~~v~~i~fSpdg~ 256 (702)
|+. ++..+..+..|...+..++-|+ ++.+++||+.|| |++|+.. ++.....+++ ...+.++...+.|.
T Consensus 1034 W~p--~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP--RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc--cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 665 5677777888888888888775 459999999999 7899865 1223334444 33499999999999
Q ss_pred EEEEEcCCCCCCCcCCCccEEEEEEccC--Cc-----EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc-EEEEec
Q 005315 257 YLVTYSSHEPSNPRDANRVVINIFDVRT--GK-----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG 328 (702)
Q Consensus 257 ~l~t~s~d~~~~~~~~~~~~i~vwd~~~--g~-----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~-~la~~~ 328 (702)
++|.++.| |.|.+.++.- ++ ..+....+.... +.. +-++....+. .++.+.
T Consensus 1112 ~~Av~t~D----------G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~-------vv~----m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1112 QFAVSTKD----------GSVRVLRIDHYNVSKRVATQVRIPNLKKDGV-------VVS----MHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred eEEEEcCC----------CeEEEEEccccccccceeeeeecccccCCCc-------eEE----eecccccccceeEEEEE
Confidence 99999999 9999999854 21 122222222211 111 2233331233 566666
Q ss_pred -CCeEEEEecCCccccccee--eccCCeeEEEeCCCCCeEEE
Q 005315 329 -KNMISVYETESFTLIDKKS--LKVENVMDFSWSPTDPIISL 367 (702)
Q Consensus 329 -d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~sp~~~~la~ 367 (702)
.+.|..||+.....+.... ...+-|++++.+|.+++++.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence 7889999998766554332 34456899999999888887
No 255
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.24 E-value=2.2e-09 Score=100.86 Aligned_cols=238 Identities=9% Similarity=0.186 Sum_probs=147.5
Q ss_pred eEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCC----CCcEEEEEecCC
Q 005315 313 VFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN----QPARVSLVQIPS 388 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~----~~~~i~~~~~~~ 388 (702)
.++|+. |..-++.+.+...+||+.+-.+.......+.+++.-+..--..++||.. ||++ .+.++.+||-..
T Consensus 10 svs~NQ-D~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLV----GGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 10 SVSFNQ-DHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALV----GGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred EEEEcc-CCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEe----cCCCCCCCCCceEEEEeccc
Confidence 578999 9999999999999999988654433333333332222222234677764 3333 245788888655
Q ss_pred cceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEE
Q 005315 389 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF 468 (702)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l 468 (702)
.+++....+ ......+... ...+++..... +.+|.....-.....+........+.+++-+.+...|
T Consensus 85 ~~~i~el~f-~~~I~~V~l~--r~riVvvl~~~----------I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 85 ERCIIELSF-NSEIKAVKLR--RDRIVVVLENK----------IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred CcEEEEEEe-ccceeeEEEc--CCeEEEEecCe----------EEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 555554442 2233333333 33444433321 5666665433333333332222233333333233444
Q ss_pred EEEEc-CCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCce-EEEEECCCcceeee----
Q 005315 469 AVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQ-LEFYNVDELETMAT---- 542 (702)
Q Consensus 469 ~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~-v~i~d~~~~~~~~~---- 542 (702)
|+-+. -| .|+|-|+...... ...+-.-+...|.+++.+-+|..+|+++. .|+ |+|||..+++++..
T Consensus 152 afPg~k~G---qvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt---kGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 152 AFPGFKTG---QVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATAST---KGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred EcCCCccc---eEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEecc---CcEEEEEEEcCCCcEeeeeecC
Confidence 44333 24 8999998654321 01222233457999999999999999997 676 69999999988875
Q ss_pred cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 543 AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 543 ~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
..+..|.+++|||++.+||++|. .+++.||.+..
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSd-----KgTlHiF~l~~ 257 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSD-----KGTLHIFSLRD 257 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcC-----CCeEEEEEeec
Confidence 34468899999999999999999 79999998864
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.4e-09 Score=112.19 Aligned_cols=339 Identities=17% Similarity=0.241 Sum_probs=202.6
Q ss_pred cccceEEECCCCcEEEEEeCCc-eEEeecCcC---cc--e---e------eee-cCC-CeeEEEecCCCCEEEEEcCCCC
Q 005315 204 WTESFVQWSPLGTYLATVHRQG-AAVWGGANT---FN--R---L------MRY-AHP-QVKLIDFSPGEKYLVTYSSHEP 266 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~---~~--~---~------~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~ 266 (702)
....|+.|+....|||+|+.+| ++|..+.+. .+ . . .++ +|. .|..+.|+.+.+.|-|...+
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~-- 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS-- 92 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC--
Confidence 4567999999999999999999 667654311 00 0 0 111 233 49999999999999888888
Q ss_pred CCCcCCCccEEEEEEccCCcEEeeccCC--CcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccc
Q 005315 267 SNPRDANRVVINIFDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI 343 (702)
Q Consensus 267 ~~~~~~~~~~i~vwd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~ 343 (702)
|.|.||-+-.|.-....... +..+. +++|+. ||..|+... ||.|.|=.++..+ +
T Consensus 93 --------GlIiVWmlykgsW~EEMiNnRnKSvV~-------------SmsWn~-dG~kIcIvYeDGavIVGsvdGNR-I 149 (1189)
T KOG2041|consen 93 --------GLIIVWMLYKGSWCEEMINNRNKSVVV-------------SMSWNL-DGTKICIVYEDGAVIVGSVDGNR-I 149 (1189)
T ss_pred --------ceEEEEeeecccHHHHHhhCcCccEEE-------------EEEEcC-CCcEEEEEEccCCEEEEeeccce-e
Confidence 99999999877654433322 22221 789999 999998888 9988877666433 3
Q ss_pred cceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc--------ceeeeeee---cccccceeEEc----
Q 005315 344 DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK--------EELRQKNL---FSVSDCKMYWQ---- 408 (702)
Q Consensus 344 ~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~---~~~~~~~~~~s---- 408 (702)
..+.++......+.||+|...+.+ +-.+ +.+.+++.... ..+..... +......+.|.
T Consensus 150 wgKeLkg~~l~hv~ws~D~~~~Lf-----~~an--ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 150 WGKELKGQLLAHVLWSEDLEQALF-----KKAN--GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred cchhcchheccceeecccHHHHHh-----hhcC--CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 333344444668899999887776 3334 34445554321 01111111 11122233443
Q ss_pred ----cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC------CC
Q 005315 409 ----SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP------RP 478 (702)
Q Consensus 409 ----~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~------~~ 478 (702)
|+-..|+++-.++. .+|.+-.....|+ .+.. .-.+....|+|+|..||+++.+.. .+
T Consensus 223 ~~v~pdrP~lavcy~nGr---------~QiMR~eND~~Pv-v~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n 289 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCYANGR---------MQIMRSENDPEPV-VVDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSN 289 (1189)
T ss_pred ccCCCCCCEEEEEEcCce---------ehhhhhcCCCCCe-EEec---ccEeecceecCCCcEEEEccCcccccCccccc
Confidence 46667777766654 4444433333332 2222 467888999999999999987532 24
Q ss_pred eEEEEEeecccCcCceEEEEEc--CCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCC
Q 005315 479 DISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPT 556 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spd 556 (702)
.|.+|..-. . .+.++ ++..|+.++|-..|-.++.+. |+.|+|-+++.. ..|..-
T Consensus 290 ~v~Fysp~G-~------i~gtlkvpg~~It~lsWEg~gLriA~Av----dsfiyfanIRP~-------------ykWgy~ 345 (1189)
T KOG2041|consen 290 KVHFYSPYG-H------IVGTLKVPGSCITGLSWEGTGLRIAIAV----DSFIYFANIRPE-------------YKWGYI 345 (1189)
T ss_pred eEEEeccch-h------heEEEecCCceeeeeEEcCCceEEEEEe----cceEEEEeeccc-------------ceEEEe
Confidence 677776521 1 34443 466799999999999999887 789998887621 112222
Q ss_pred CCEEEEEEeecccccccEEEEEeccceeeeeccccEeeEEEeeCCCCCCChhhHH
Q 005315 557 GRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEE 611 (702)
Q Consensus 557 g~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~~~~i~~~~w~p~~~~l~s~~~d~ 611 (702)
...++..-..+....-.|.+||.....-+.....++.++++..+--.|++...++
T Consensus 346 e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~ 400 (1189)
T KOG2041|consen 346 EETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDG 400 (1189)
T ss_pred eeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccC
Confidence 2223333222112245677787765443333334444444444433333333333
No 257
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3.1e-10 Score=112.22 Aligned_cols=302 Identities=16% Similarity=0.220 Sum_probs=193.9
Q ss_pred CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec--CC-CeeEEEecCC--CCEEEEEcCCCCCC
Q 005315 195 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HP-QVKLIDFSPG--EKYLVTYSSHEPSN 268 (702)
Q Consensus 195 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~-~v~~i~fSpd--g~~l~t~s~d~~~~ 268 (702)
....+..|.++|+.|.|...|+.|++++.+. |.+||+. ......+|. |. +|....|-|. .+-|++++.|
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~-~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d---- 208 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWV-SGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD---- 208 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhh-ccCcccccccccccchhhhhccCCCCCcCceecccc----
Confidence 3345688999999999999999999999998 8899999 888888884 33 4776777774 4678999999
Q ss_pred CcCCCccEEEEEEcc-CCcE--EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccc
Q 005315 269 PRDANRVVINIFDVR-TGKV--MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID 344 (702)
Q Consensus 269 ~~~~~~~~i~vwd~~-~g~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~ 344 (702)
+.|++=.+. +|.. ...+..|.+.+. -++.-|.+-.-|.+++ |+.+.-+|+.......
T Consensus 209 ------gqvr~s~i~~t~~~e~t~rl~~h~g~vh-------------klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 209 ------GQVRVSEILETGYVENTKRLAPHEGPVH-------------KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred ------CceeeeeeccccceecceecccccCccc-------------eeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 888876653 3332 233344444431 2344441224455555 9999888887654332
Q ss_pred cee---eccC---CeeEEEeCCCCC-eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEE
Q 005315 345 KKS---LKVE---NVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVK 417 (702)
Q Consensus 345 ~~~---~~~~---~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~ 417 (702)
+.. .+.. +...++..|... .+++ ++.++.++++...--..+.... .+ . .+.|. .
T Consensus 270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV-----gG~dqf~RvYD~R~~~~e~~n~-~~---~----~f~p~--h---- 330 (559)
T KOG1334|consen 270 KFVCREADEKERVGLYTIAVDPRNTNEFAV-----GGSDQFARVYDQRRIDKEENNG-VL---D----KFCPH--H---- 330 (559)
T ss_pred eeeeeccCCccceeeeeEecCCCCcccccc-----CChhhhhhhhcccchhhccccc-hh---h----hcCCc--c----
Confidence 221 1222 356788888765 6676 6677766654322111110000 00 0 00110 0
Q ss_pred EcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcC-----
Q 005315 418 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG----- 492 (702)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~----- 492 (702)
+ +....-.|++++++.++.-+.+...|- .|++|.-.-+.+..
T Consensus 331 -------------------l-----------~~d~~v~ITgl~Ysh~~sElLaSYnDe---~IYLF~~~~~~G~~p~~~s 377 (559)
T KOG1334|consen 331 -------------------L-----------VEDDPVNITGLVYSHDGSELLASYNDE---DIYLFNKSMGDGSEPDPSS 377 (559)
T ss_pred -------------------c-----------cccCcccceeEEecCCccceeeeeccc---ceEEeccccccCCCCCCCc
Confidence 0 001145688899998877777777776 78888543332210
Q ss_pred -ceEEEEE-cCCC----ceeE-EEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEE
Q 005315 493 -RVSKLTT-LKGK----QANA-LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATA 563 (702)
Q Consensus 493 -~~~~~~~-~~~~----~v~~-~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~ 563 (702)
+-..+.. +.+| .|.. =.|-|...|+++|+. -|.|.||+-.+++++.. +...-|+|+.=+|---.||++
T Consensus 378 ~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD---CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 378 PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD---CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred chhhccchhhcccccccccceeeeccCccceEEecCc---cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 0011122 3344 2333 357899999999997 89999999999988764 444588999999998899999
Q ss_pred EeecccccccEEEEEec
Q 005315 564 VTSVHEMENGFNIWSFN 580 (702)
Q Consensus 564 s~~~~~~d~~v~iw~~~ 580 (702)
+. |..|+||...
T Consensus 455 Gi-----d~DVKIWTP~ 466 (559)
T KOG1334|consen 455 GI-----DHDVKIWTPL 466 (559)
T ss_pred CC-----ccceeeecCC
Confidence 99 9999999854
No 258
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=5.9e-11 Score=115.80 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=79.4
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
..+|.|||++|| ++.|++|.-||+.+|+ ..++|++|+.+|.+||||||+|.+.++|++||+.||++.+-....|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 689999999999 9999999999999998 58999999999999999999999999999999999999985444666665
Q ss_pred ccCccc--ccCCCCCCCC
Q 005315 135 FDDFDK--FMKVPDEWAP 150 (702)
Q Consensus 135 ~~d~~~--~~~~~~~~~~ 150 (702)
--+--| +.++|..|..
T Consensus 161 Svan~RLFiG~IPK~k~k 178 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKK 178 (506)
T ss_pred eeecceeEeccCCccccH
Confidence 444333 3457766654
No 259
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.20 E-value=2.4e-08 Score=103.55 Aligned_cols=314 Identities=17% Similarity=0.206 Sum_probs=161.2
Q ss_pred CCCCcEEEEEeC----------CceEEeecCcCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005315 212 SPLGTYLATVHR----------QGAAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 280 (702)
Q Consensus 212 Spdg~~lat~~~----------~~i~iw~~~~~~~~~~~~~-~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vw 280 (702)
||||++++.... ....|+|+. +.+...... ...+....|||+|++||..... .|.++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~-~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~-----------nly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIE-TGEITPLTPPPPKLQDAKWSPDGKYIAFVRDN-----------NLYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETT-TTEEEESS-EETTBSEEEE-SSSTEEEEEETT-----------EEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecC-CCceEECcCCccccccceeecCCCeeEEEecC-----------ceEEE
Confidence 799999988542 125688998 544333332 3569999999999999988765 79999
Q ss_pred EccCCcEEeeccCCCcccccCCCC-----CCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCe
Q 005315 281 DVRTGKVMRDFKGSADEFAVGGTG-----GVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENV 353 (702)
Q Consensus 281 d~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v 353 (702)
+..++...+........+.-+... .+.+. ...+.||| |+++||... +..|..+.+.....-.. ..+.+
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~-~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp~~ 143 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR-RSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDS---QYPEV 143 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSS-SBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-EE
T ss_pred ECCCCCeEEeccccceeEEcCccceecccccccc-ccceEECC-CCCEEEEEEECCcCCceEEeeccCCccc---cCCcc
Confidence 987775444332222211100000 00011 12689999 999999887 55565555432111100 01112
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee-----cccccceeEEccCCCEEEEE-Eccccccccc
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-----FSVSDCKMYWQSSGDYLAVK-VDRYTKTKKS 427 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~g~~l~~~-~~~~~~~~~~ 427 (702)
..+.+ |..|..+..+.++++++.+.+....... .......+.|.+++..|++. .++...
T Consensus 144 ~~~~Y-----------Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~---- 208 (353)
T PF00930_consen 144 ESIRY-----------PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN---- 208 (353)
T ss_dssp EEEE-------------BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST----
T ss_pred ccccc-----------CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC----
Confidence 22222 1113344556788888876654221111 12223456899999955544 443321
Q ss_pred ccccEEEEEEecCCcceeEEEe-cCCCCceeEEEEe-eCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--
Q 005315 428 TYTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 503 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 503 (702)
...+.+++...........+. .+.-.....+.+. +++..++..+...+...|.+++...+ ....+..+
T Consensus 209 -~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~-------~~~~lT~G~~ 280 (353)
T PF00930_consen 209 -RLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG-------KPRQLTSGDW 280 (353)
T ss_dssp -EEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS-------EEEESS-SSS
T ss_pred -EEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc-------ceeccccCce
Confidence 111333343332222111111 1111222355655 77777777666433446666665433 23344433
Q ss_pred ce-eEEEEccCCCEEEEEeccC--CCceEEEEECC-CcceeeecccCce-eeeEECCCCCEEEEEEe
Q 005315 504 QA-NALFWSPSGRFIVLAGLKG--FNGQLEFYNVD-ELETMATAEHFMA-TDVEWDPTGRYVATAVT 565 (702)
Q Consensus 504 ~v-~~~~~spdg~~l~~~~~~~--~dg~v~i~d~~-~~~~~~~~~~~~i-~~~~~spdg~~l~t~s~ 565 (702)
.| ..+.|+++++.|+..+.+. ....|+..++. .+........... ..+.|||+|++++...+
T Consensus 281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 45 3488999988877655432 24467777777 5555544333333 48999999998876655
No 260
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.18 E-value=2.9e-11 Score=103.55 Aligned_cols=82 Identities=30% Similarity=0.278 Sum_probs=75.9
Q ss_pred cCCCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 55 ESGFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 55 ~~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
+.+-+.+|||+||+ .++++.|.+||.+.+. .+++||.|+.+.+.+||||++|.+.++|..|++.||+.+|.++ +++|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr-pIrv 83 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR-PIRV 83 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc-eeEE
Confidence 34457899999999 9999999999999888 6899999999999999999999999999999999999999988 9999
Q ss_pred EeccC
Q 005315 133 NMFDD 137 (702)
Q Consensus 133 ~~~~d 137 (702)
++-..
T Consensus 84 ~kas~ 88 (203)
T KOG0131|consen 84 NKASA 88 (203)
T ss_pred Eeccc
Confidence 98773
No 261
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=5.1e-11 Score=95.54 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=69.6
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.-+|+|||+||. -++|+++-+||+.-|+ ..|.|-+|+.+..+.|||||+|-+.++|..|++.+||..||.+ ++++-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr-~ir~D 111 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR-PIRID 111 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc-ceeee
Confidence 358999999999 9999999999998777 4799999999999999999999999999999999999999977 66654
No 262
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=6.1e-11 Score=106.63 Aligned_cols=75 Identities=25% Similarity=0.393 Sum_probs=68.7
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
-.+.|-|.||| .+++++|+.||..++. ..+++..|.+||.+||||||.|.+.++|++||+.|||+.++.- .|+|.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L-ILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNL-ILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceE-EEEEE
Confidence 45789999999 9999999999999988 5899999999999999999999999999999999999999844 56654
No 263
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=2e-07 Score=106.67 Aligned_cols=300 Identities=17% Similarity=0.269 Sum_probs=165.7
Q ss_pred CcccceEEECCCCcEEEEEeCCc-eEEeecC--------------cC--------cceeeeec-----------------
Q 005315 203 YWTESFVQWSPLGTYLATVHRQG-AAVWGGA--------------NT--------FNRLMRYA----------------- 242 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~--------------~~--------~~~~~~~~----------------- 242 (702)
...|.+++||||+..||.....+ +.+..-. +. ++.-.+|+
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 45799999999999999988776 4333210 00 00111111
Q ss_pred ---------CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccce
Q 005315 243 ---------HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPV 313 (702)
Q Consensus 243 ---------~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 313 (702)
..+-..|+|-.||.|+|+.+.++.. +....++||+ +.|.+..+-.. +.|+.- +
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~----~~~R~iRVy~-ReG~L~stSE~------------v~gLe~-~ 261 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET----GSRRVIRVYS-REGELQSTSEP------------VDGLEG-A 261 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCC----CceeEEEEEC-CCceEEecccc------------CCCccC-C
Confidence 1124578899999999988874211 1237899999 56775443331 222222 6
Q ss_pred EEEcCCCCcEEEEec----CCeEEEEecCCcccccceeec----cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEe
Q 005315 314 FRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLK----VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 385 (702)
Q Consensus 314 ~~~s~~dg~~la~~~----d~~i~v~d~~~~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 385 (702)
++|.| .|++||+.. ...|.+|+-+.. .-..+.+. ...|..+.|++++..||++.. +. |.+|.
T Consensus 262 l~WrP-sG~lIA~~q~~~~~~~VvFfErNGL-rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~-----~~---vqLWt 331 (928)
T PF04762_consen 262 LSWRP-SGNLIASSQRLPDRHDVVFFERNGL-RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE-----DR---VQLWT 331 (928)
T ss_pred ccCCC-CCCEEEEEEEcCCCcEEEEEecCCc-EeeeEecCCCCCCceeeEEEECCCCCEEEEEec-----CC---ceEEE
Confidence 89999 999999887 245666764422 11222232 235899999999999999642 22 55555
Q ss_pred cCCcceeeeeee-cc-c-ccceeEEccCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEE
Q 005315 386 IPSKEELRQKNL-FS-V-SDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 461 (702)
Q Consensus 386 ~~~~~~~~~~~~-~~-~-~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 461 (702)
..+..-.-...+ +. . ....+.|+|... .|.+.+..+. +..+++. ..++.
T Consensus 332 ~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~---------~~~~~~~------------------~~v~~ 384 (928)
T PF04762_consen 332 RSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ---------YEIYDFA------------------WDVSR 384 (928)
T ss_pred eeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc---------EEEEEEE------------------EEEEe
Confidence 544432111111 11 1 122378998543 4555444222 2222211 01111
Q ss_pred ----eeCC-cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 462 ----EPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 462 ----sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
+|+. ...++. ||. ++.+-.++...-.... ....+. ..+|++++|++++..+++... ||.|.+|...
T Consensus 385 s~~~~~~D~g~vaVI--DG~--~lllTpf~~a~VPPPM-s~~~l~~~~~v~~vaf~~~~~~~avl~~---d~~l~~~~~~ 456 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVI--DGN--KLLLTPFRRAVVPPPM-SSYELELPSPVNDVAFSPSNSRFAVLTS---DGSLSIYEWD 456 (928)
T ss_pred cCCCCccCceEEEEE--eCC--eEEEecccccCCCchH-hceEEcCCCCcEEEEEeCCCCeEEEEEC---CCCEEEEEec
Confidence 1211 123333 332 6777776543322111 112222 457999999999987777776 9999999854
Q ss_pred Cccee--------ee------------cccCceeeeEECCCCCEEEEEEe
Q 005315 536 ELETM--------AT------------AEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 536 ~~~~~--------~~------------~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
..... .. .....+..++|..+...++....
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (928)
T PF04762_consen 457 LKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDS 506 (928)
T ss_pred CCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEec
Confidence 21110 00 12234567788777766555544
No 264
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.16 E-value=2.6e-07 Score=105.78 Aligned_cols=329 Identities=14% Similarity=0.211 Sum_probs=183.7
Q ss_pred CCcccceEEECCCCcEEEEEeCCc-eEEe----ecCcCcce-eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005315 202 SYWTESFVQWSPLGTYLATVHRQG-AAVW----GGANTFNR-LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV 275 (702)
Q Consensus 202 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw----~~~~~~~~-~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~ 275 (702)
....|.++.+-++...|+.+..+| |.+. +.. .... +.-.-..+|.+++||||+..|+....+ +
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~-~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~----------~ 142 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPD-EDEIEIVGSVDSGILAASWSPDEELLALVTGE----------G 142 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC-CceeEEEEEEcCcEEEEEECCCcCEEEEEeCC----------C
Confidence 346788999999999899998888 7766 444 2221 111224579999999999999999888 7
Q ss_pred EEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCe-EE-EEecCCcccc--cceeeccC
Q 005315 276 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM-IS-VYETESFTLI--DKKSLKVE 351 (702)
Q Consensus 276 ~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~-i~-v~d~~~~~~~--~~~~~~~~ 351 (702)
+|.+.. ++...+.....+..... . .... .+-|-. ....|=....+. -+ .-+ ++...+ .... ...
T Consensus 143 ~l~~mt-~~fd~i~E~~l~~~~~~--~-~~~V-----sVGWGk-KeTQF~Gs~gK~aa~~~~~-p~~~~~d~~~~s-~dd 210 (928)
T PF04762_consen 143 NLLLMT-RDFDPISEVPLDSDDFG--E-SKHV-----SVGWGK-KETQFHGSAGKAAARQLRD-PTVPKVDEGKLS-WDD 210 (928)
T ss_pred EEEEEe-ccceEEEEeecCccccC--C-Ccee-----eeccCc-ccCccCcchhhhhhhhccC-CCCCccccCccc-cCC
Confidence 887775 57777666655433220 0 0000 233333 222211000000 00 000 000000 0111 223
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCC-CcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQ-PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
+-..++|-.||.++|+...+. ..+ .-.+.+|+-. +...........-.-.++|.|.|..+|+......+ .
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~--~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~------~ 281 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEP--ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR------H 281 (928)
T ss_pred CceEEEECCCCcEEEEEEEEc--CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCC------c
Confidence 456899999999999865433 233 3344555443 11111111112223357899999999987642221 1
Q ss_pred cEEEEEEecCCcceeEEEec--CCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE--cCC-Cce
Q 005315 431 GFELFRIKERDIPIEVLELD--NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT--LKG-KQA 505 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~--~~~-~~v 505 (702)
.+.+|. .+|..-..+.++ .....|..++|++++..||+...+ .|.+|....- .+-.-.. +.. ..+
T Consensus 282 ~VvFfE--rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~----~vqLWt~~NY----HWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 282 DVVFFE--RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED----RVQLWTRSNY----HWYLKQEIRFSSSESV 351 (928)
T ss_pred EEEEEe--cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC----CceEEEeeCC----EEEEEEEEEccCCCCC
Confidence 133333 223322223332 345689999999999999998755 4999988432 2222222 222 234
Q ss_pred eEEEEccCC-CEEEEEeccCCCceEEEEECC----C----------------cc-eeee----------------cccCc
Q 005315 506 NALFWSPSG-RFIVLAGLKGFNGQLEFYNVD----E----------------LE-TMAT----------------AEHFM 547 (702)
Q Consensus 506 ~~~~~spdg-~~l~~~~~~~~dg~v~i~d~~----~----------------~~-~~~~----------------~~~~~ 547 (702)
..+.|+|.. ..|.+.+. +|.+..+++. . |. ++.+ .-..+
T Consensus 352 ~~~~Wdpe~p~~L~v~t~---~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~ 428 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTS---NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSP 428 (928)
T ss_pred CceEECCCCCCEEEEEec---CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCC
Confidence 558999953 33555443 3555443322 0 11 1111 11256
Q ss_pred eeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 548 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 548 i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
|.+++|++++..+++... |+.+.+|...
T Consensus 429 v~~vaf~~~~~~~avl~~-----d~~l~~~~~~ 456 (928)
T PF04762_consen 429 VNDVAFSPSNSRFAVLTS-----DGSLSIYEWD 456 (928)
T ss_pred cEEEEEeCCCCeEEEEEC-----CCCEEEEEec
Confidence 889999999988888888 8999999854
No 265
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.13 E-value=2.2e-07 Score=96.34 Aligned_cols=305 Identities=13% Similarity=0.186 Sum_probs=156.0
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCe
Q 005315 252 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM 331 (702)
Q Consensus 252 Spdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~ 331 (702)
|||+++++........ -+....+.+.|||+.+++............ ...||| +|+++|...++.
T Consensus 1 S~d~~~~l~~~~~~~~-~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~--------------~~~~sP-~g~~~~~v~~~n 64 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQ-WRHSFKGDYYIYDIETGEITPLTPPPPKLQ--------------DAKWSP-DGKYIAFVRDNN 64 (353)
T ss_dssp -TTSSEEEEEEEEEEE-SSSEEEEEEEEEETTTTEEEESS-EETTBS--------------EEEE-S-SSTEEEEEETTE
T ss_pred CCCCCeEEEEECcEEe-eeeccceeEEEEecCCCceEECcCCccccc--------------cceeec-CCCeeEEEecCc
Confidence 7999998875432110 011122679999998887655444322221 679999 999999999999
Q ss_pred EEEEecCCcccccceeec-----------------cCCeeEEEeCCCCCeEEEEeecCCCCCCCcE-EEEEecCCcc---
Q 005315 332 ISVYETESFTLIDKKSLK-----------------VENVMDFSWSPTDPIISLFVPELGGGNQPAR-VSLVQIPSKE--- 390 (702)
Q Consensus 332 i~v~d~~~~~~~~~~~~~-----------------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~-i~~~~~~~~~--- 390 (702)
|.+++..++....-.... ...-..+-||||+++||++.-.. ..++ +.+.......
T Consensus 65 ly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~----~~v~~~~~~~~~~~~~~y 140 (353)
T PF00930_consen 65 LYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE----REVPEYPLPDYSPPDSQY 140 (353)
T ss_dssp EEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-----TTS-EEEEEEESSSTESS
T ss_pred eEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC----cCCceEEeeccCCccccC
Confidence 999998766432211100 11235688999999999864332 2222 2222211111
Q ss_pred -eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec----CCCCceeEEEEeeCC
Q 005315 391 -ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD----NKNDKIIAFAWEPKG 465 (702)
Q Consensus 391 -~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~----~h~~~v~~~~~sp~g 465 (702)
.+.... +-.-|.-. ....+.++++.... ...+.++ .....+..+.|++++
T Consensus 141 p~~~~~~----------YPk~G~~n-------------p~v~l~v~~~~~~~--~~~~~~~~~~~~~~~yl~~v~W~~d~ 195 (353)
T PF00930_consen 141 PEVESIR----------YPKAGDPN-------------PRVSLFVVDLASGK--TTELDPPNSLNPQDYYLTRVGWSPDG 195 (353)
T ss_dssp -EEEEEE------------BTTS----------------EEEEEEEESSSTC--CCEE---HHHHTSSEEEEEEEEEETT
T ss_pred Ccccccc----------cCCCCCcC-------------CceEEEEEECCCCc--EEEeeeccccCCCccCcccceecCCC
Confidence 111111 10011100 00113334443322 2222222 335678899999999
Q ss_pred cEEEEEEcCCCCC--eEEEEEeecccCcCceEEEE-EcCCCce---eEEEEc-cCCCEEEEEeccCCCceEEEEECCCcc
Q 005315 466 HRFAVIHGDSPRP--DISFYSMRTAQHAGRVSKLT-TLKGKQA---NALFWS-PSGRFIVLAGLKGFNGQLEFYNVDELE 538 (702)
Q Consensus 466 ~~l~~~~~d~~~~--~v~i~d~~~~~~~~~~~~~~-~~~~~~v---~~~~~s-pdg~~l~~~~~~~~dg~v~i~d~~~~~ 538 (702)
+.|++...+...+ .+.++|..++.. ..+. ......+ ..+.|. +++..++..+..+.-..|++++..++.
T Consensus 196 ~~l~~~~~nR~q~~~~l~~~d~~tg~~----~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~ 271 (353)
T PF00930_consen 196 KRLWVQWLNRDQNRLDLVLCDASTGET----RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK 271 (353)
T ss_dssp EEEEEEEEETTSTEEEEEEEEECTTTC----EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred cEEEEEEcccCCCEEEEEEEECCCCce----eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence 9555554433222 445555544332 2222 2223322 356655 777766665543223456777777665
Q ss_pred eee-ecccCcee-eeEECCCCCEEEEEEeecccccccEEEEEec-cceeeeecc--ccEeeEEEeeCCCCCC
Q 005315 539 TMA-TAEHFMAT-DVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLK--DHFFQFLWRPRPPSFL 605 (702)
Q Consensus 539 ~~~-~~~~~~i~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~~~--~~i~~~~w~p~~~~l~ 605 (702)
... +.....|+ -+.|+++++.|...+.........++.-++. +..+..... ..-..+.+||++++++
T Consensus 272 ~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 272 PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence 333 23345564 4889999998877766311112344444556 544444322 1116899999998765
No 266
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.13 E-value=1.6e-10 Score=88.76 Aligned_cols=67 Identities=28% Similarity=0.476 Sum_probs=61.4
Q ss_pred EEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 005315 62 IVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 130 (702)
Q Consensus 62 ~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~ 130 (702)
|||+||| .++++++.++|+.+++ ..+.++.+ .+++++|||||+|.+.++|..|++.+||+.+.++ .|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~-~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGR-KI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE-EE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECcc-Cc
Confidence 7999999 9999999999999998 47888887 4899999999999999999999999999998866 44
No 267
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.11 E-value=1.1e-07 Score=91.96 Aligned_cols=237 Identities=19% Similarity=0.188 Sum_probs=151.4
Q ss_pred ceEEECC-CCcEEEEEeCCc--eEEeecCcCcceeeeecCCC----eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005315 207 SFVQWSP-LGTYLATVHRQG--AAVWGGANTFNRLMRYAHPQ----VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 279 (702)
Q Consensus 207 ~~v~~Sp-dg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~~----v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v 279 (702)
..++.+| .+..+|++-..| ..+||.. ++.....+..+. --.-.|||||++|.+...+ -+...|.|-|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~-~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd-----~~~g~G~IgV 81 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCR-TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND-----YETGRGVIGV 81 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcC-CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc-----cCCCcEEEEE
Confidence 4678899 677888888888 5699999 888777775442 3467899999999998877 3345599999
Q ss_pred EEcc-CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCC-------------------eEEEEecCC
Q 005315 280 FDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKN-------------------MISVYETES 339 (702)
Q Consensus 280 wd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~-------------------~i~v~d~~~ 339 (702)
||.. +-+.+..|..+.-... .+.|.| ||+.|+.+..| .+.+.|..+
T Consensus 82 yd~~~~~~ri~E~~s~GIGPH-------------el~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIGPH-------------ELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred EECcCCcEEEeEecCCCcChh-------------hEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 9997 5566777766543221 578999 99877766421 355556677
Q ss_pred cccccceee----ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEE
Q 005315 340 FTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLA 415 (702)
Q Consensus 340 ~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 415 (702)
+.++.+..+ +.-.+..+++.++|..++-......-.+...-+. .+.+++.
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva-----------------------~~~~g~~--- 201 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVA-----------------------LHRRGGA--- 201 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEE-----------------------EEcCCCc---
Confidence 777765433 4446888888888765553111000000000000 0111111
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceE
Q 005315 416 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 495 (702)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 495 (702)
+.++.+.... ...+ .+.+-+++++++|..+++++-.+. .+.+||..++.
T Consensus 202 ----------------~~~~~~p~~~----~~~l---~~Y~gSIa~~~~g~~ia~tsPrGg--~~~~~d~~tg~------ 250 (305)
T PF07433_consen 202 ----------------LRLLPAPEEQ----WRRL---NGYIGSIAADRDGRLIAVTSPRGG--RVAVWDAATGR------ 250 (305)
T ss_pred ----------------ceeccCChHH----HHhh---CCceEEEEEeCCCCEEEEECCCCC--EEEEEECCCCC------
Confidence 1122211100 0123 688999999999999998887663 89999987765
Q ss_pred EEEEcCCCceeEEEEccCCCEEEEEe
Q 005315 496 KLTTLKGKQANALFWSPSGRFIVLAG 521 (702)
Q Consensus 496 ~~~~~~~~~v~~~~~spdg~~l~~~~ 521 (702)
.+....-..+..++-.+++ ++++.+
T Consensus 251 ~~~~~~l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 251 LLGSVPLPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EeeccccCceeeeeecCCc-eEEeCC
Confidence 5555544567778877777 666665
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=1.5e-08 Score=96.27 Aligned_cols=324 Identities=15% Similarity=0.211 Sum_probs=181.5
Q ss_pred cccceEEECCCCcEEEEEeCCc-eEEeecCcCcc----eeeee--cC------------CCeeEEEecCCCC--EEEEEc
Q 005315 204 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN----RLMRY--AH------------PQVKLIDFSPGEK--YLVTYS 262 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~----~~~~~--~~------------~~v~~i~fSpdg~--~l~t~s 262 (702)
..+++|.|...|.+||||..+| |.++.-..... ....| |. ..|..|.|.+++. .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 5678999999999999999999 77775441222 12222 11 1378899998874 344444
Q ss_pred CCCCCCCcCCCccEEEEEEccCCcEEe--------------------eccCCCcccccCC----CCCCCCcccceEEEcC
Q 005315 263 SHEPSNPRDANRVVINIFDVRTGKVMR--------------------DFKGSADEFAVGG----TGGVAGVSWPVFRWGG 318 (702)
Q Consensus 263 ~d~~~~~~~~~~~~i~vwd~~~g~~~~--------------------~~~~~~~~~~~~~----~~~~~~~~w~~~~~s~ 318 (702)
.+ .+|++|.+....... .+..+...+. .. -+.....+..+++++.
T Consensus 106 Nd----------ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-a~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 106 ND----------KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-ASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CC----------cceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-eeeeeeccccceeEeeeeeecC
Confidence 55 689999884332111 1111110000 00 0001112223678888
Q ss_pred CCCcEEEEecCCeEEEEecCC----cccccceeecc----CCeeEEEeCCCC-CeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 319 GKDKYFAKLGKNMISVYETES----FTLIDKKSLKV----ENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 319 ~dg~~la~~~d~~i~v~d~~~----~~~~~~~~~~~----~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
|...+.++.|=.|.+|++.- +..+..+.... .-|++..|+|.. +.+++ .+..+++++..+.....
T Consensus 175 -D~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y-----SSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 175 -DKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY-----SSSKGTIRLCDMRQSAL 248 (433)
T ss_pred -ccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE-----ecCCCcEEEeechhhhh
Confidence 99999999999999999862 22333222222 226788899974 55666 55666766665542110
Q ss_pred -----c------eeeeeeecc---cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC---
Q 005315 390 -----E------ELRQKNLFS---VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK--- 452 (702)
Q Consensus 390 -----~------~~~~~~~~~---~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h--- 452 (702)
+ .-..+.++. .+...+.|+++|+|+++.. |-.+.+|++.-...|+....+...
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD----------yltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD----------YLTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec----------cceeEEEeccccCCcceEEeehHhHHH
Confidence 1 011222222 2334567899999998743 334799999877777766665211
Q ss_pred -------CCce---eEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCc-eeEEEEccCCCEEEEEe
Q 005315 453 -------NDKI---IAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-ANALFWSPSGRFIVLAG 521 (702)
Q Consensus 453 -------~~~v---~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~spdg~~l~~~~ 521 (702)
.+.| ..++|+.++.++.+|+-.. .+++|++..+.. .-.+++... .....--..-+.+.+++
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n---~frvf~~~~gsk-----~d~tl~asr~~~~~~~~~k~~~V~~~g 390 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN---VFRVFNLARGSK-----EDFTLEASRKNMKPRKVLKLRLVSSSG 390 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccc---eEEEecCCCCcc-----eeecccccccCCcccccccceeeecCC
Confidence 1222 2478999999999998877 899999754432 111221110 00000001112333333
Q ss_pred ccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEE
Q 005315 522 LKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIW 577 (702)
Q Consensus 522 ~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw 577 (702)
. .....++ .-...-...+...+|+|....||.+.. +.++||
T Consensus 391 ~---r~~~~~~------vd~ldf~kkilh~aWhp~en~ia~aat------nnlyif 431 (433)
T KOG1354|consen 391 K---RKRDEIS------VDALDFRKKILHTAWHPKENSIAVAAT------NNLYIF 431 (433)
T ss_pred C---ccccccc------cchhhhhhHHHhhccCCccceeeeeec------CceEEe
Confidence 3 2221111 000011234557899999999999888 667665
No 269
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.10 E-value=2.3e-10 Score=119.18 Aligned_cols=77 Identities=27% Similarity=0.360 Sum_probs=71.2
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
+.+.+|||+||| .+++++|.++|+.+|. ..+.|+.|+.||++||||||+|.+.++|..|+..|||+.++++ .++|.-
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr-~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNR-VLQVSF 345 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCe-EEEEEE
Confidence 345579999999 9999999999999998 5899999999999999999999999999999999999999988 888764
No 270
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1.6e-11 Score=104.78 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=70.5
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
+..|||+||| ..+|.++--.|+++|+ ++|-+..|..||+|+||||+.|++.-.-..|+.+|||.++.++ +++|--
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR-tirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR-TIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce-eEEeee
Confidence 5789999999 9999999999999999 7999999999999999999999999999999999999999888 887754
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.09 E-value=1.7e-08 Score=95.86 Aligned_cols=277 Identities=16% Similarity=0.240 Sum_probs=159.8
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-c----EEeeccCCCcccc----cCCCCCCCCcccceEE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-K----VMRDFKGSADEFA----VGGTGGVAGVSWPVFR 315 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g-~----~~~~~~~~~~~~~----~~~~~~~~~~~w~~~~ 315 (702)
-+.++.|...|.+||||..+ |.|.++.-... + ....++.|....- ..-...+. .++
T Consensus 27 iis~vef~~~Ge~LatGdkg----------GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKin-----kIr 91 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKG----------GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKIN-----KIR 91 (433)
T ss_pred ceeeEEeecccceEeecCCC----------CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhh-----hce
Confidence 38899999999999999999 99999863221 1 2334444433221 00011122 467
Q ss_pred EcCCCCc---EEEEecCCeEEEEecCCccccc-ceee----ccCCeeEEE---eCCCCCeEEEEeecCCCCCCCcEEEEE
Q 005315 316 WGGGKDK---YFAKLGKNMISVYETESFTLID-KKSL----KVENVMDFS---WSPTDPIISLFVPELGGGNQPARVSLV 384 (702)
Q Consensus 316 ~s~~dg~---~la~~~d~~i~v~d~~~~~~~~-~~~~----~~~~v~~~~---~sp~~~~la~~~~~~~~~~~~~~i~~~ 384 (702)
|.+ ++. +|.+..|.+|++|.+....... .... ....+.++. ..|....+.+ .|.+
T Consensus 92 w~~-~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea-~prR------------ 157 (433)
T KOG1354|consen 92 WLD-DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEA-SPRR------------ 157 (433)
T ss_pred ecC-CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeee-eeee------------
Confidence 777 554 5666669999999877432211 1100 111122211 1111111111 0000
Q ss_pred ecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC-----CceeEE
Q 005315 385 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN-----DKIIAF 459 (702)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~-----~~v~~~ 459 (702)
... +.+.-..-.+..+.|+..++++.+- .+.||.+...+.....+.+.+++ .-|++.
T Consensus 158 ------v~a--NaHtyhiNSIS~NsD~Et~lSADdL----------RINLWnlei~d~sFnIVDIKP~nmEeLteVITsa 219 (433)
T KOG1354|consen 158 ------VYA--NAHTYHINSISVNSDKETFLSADDL----------RINLWNLEIIDQSFNIVDIKPANMEELTEVITSA 219 (433)
T ss_pred ------ecc--ccceeEeeeeeecCccceEeeccce----------eeeeccccccCCceeEEEccccCHHHHHHHHhhh
Confidence 000 0111111223456677666654332 15788877655555555554443 468889
Q ss_pred EEee-CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC------------CceeEEEEccCCCEEEEEeccCCC
Q 005315 460 AWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG------------KQANALFWSPSGRFIVLAGLKGFN 526 (702)
Q Consensus 460 ~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~------------~~v~~~~~spdg~~l~~~~~~~~d 526 (702)
.|+| ..+.|+..+..| +|++-|++....-..-..+...+. ..|..+.||++|+|+++-..
T Consensus 220 EFhp~~cn~f~YSSSKG---tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy---- 292 (433)
T KOG1354|consen 220 EFHPHHCNVFVYSSSKG---TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY---- 292 (433)
T ss_pred ccCHhHccEEEEecCCC---cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc----
Confidence 9999 567888888888 999999984321000001111111 14678999999999998764
Q ss_pred ceEEEEECC-Ccceeee--------------cccCce---eeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 527 GQLEFYNVD-ELETMAT--------------AEHFMA---TDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 527 g~v~i~d~~-~~~~~~~--------------~~~~~i---~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
-+|++||+. ..+.+.+ .+...| ..++||-++.+++||+. .+.+++|+..
T Consensus 293 ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy-----~n~frvf~~~ 359 (433)
T KOG1354|consen 293 LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY-----NNVFRVFNLA 359 (433)
T ss_pred ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc-----cceEEEecCC
Confidence 789999995 2222221 112222 35899999999999999 7999999854
No 272
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.2e-11 Score=103.81 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=72.5
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
-++|||+||. .|++.-|...|-.+++ .+|.||+|-++++.|||+||+|.-.++|..|+.+||+..|.++ +++||...
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr-tirVN~Ak 88 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR-TIRVNLAK 88 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcce-eEEEeecC
Confidence 4689999999 9999999999999999 6999999999999999999999999999999999999999998 99999643
No 273
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1.9e-08 Score=105.13 Aligned_cols=245 Identities=12% Similarity=0.158 Sum_probs=147.3
Q ss_pred ccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCC--CeeEEEecCCC----------C--EEEEEcCCCCCCCc
Q 005315 205 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP--QVKLIDFSPGE----------K--YLVTYSSHEPSNPR 270 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~--~v~~i~fSpdg----------~--~l~t~s~d~~~~~~ 270 (702)
.-.++.|+|.| +||+|+..-|.|-|.. +.+.+..+.++ .|+.+.|+|-. . .||++...
T Consensus 17 N~~A~Dw~~~G-LiAygshslV~VVDs~-s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~------ 88 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHSLVSVVDSR-SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS------ 88 (1062)
T ss_pred cccccccCccc-eEEEecCceEEEEehh-hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc------
Confidence 35678999988 8999999999999999 88888888544 49999998732 1 34444444
Q ss_pred CCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC-cEEEEec-CCeEEEEecCCcccccceee
Q 005315 271 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSL 348 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg-~~la~~~-d~~i~v~d~~~~~~~~~~~~ 348 (702)
|.|.+||...+..+..+..+..++ ..+.|- -|-+ +. .+|+... ...|.+|+..+|+.+.++..
T Consensus 89 ----GrIil~d~~~~s~~~~l~~~~~~~--------qdl~W~--~~rd-~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y 153 (1062)
T KOG1912|consen 89 ----GRIILVDFVLASVINWLSHSNDSV--------QDLCWV--PARD-DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY 153 (1062)
T ss_pred ----CcEEEEEehhhhhhhhhcCCCcch--------hheeee--eccC-cchheeEEecCCcEEEEEEccCCceeecccc
Confidence 899999999998888888776654 344442 3333 44 3444444 89999999999999988877
Q ss_pred ccCCeeEEEeCCCC-CeEEEEeec--------CCC--CCCCcEEEEEecCCcc------eeee---------eeeccccc
Q 005315 349 KVENVMDFSWSPTD-PIISLFVPE--------LGG--GNQPARVSLVQIPSKE------ELRQ---------KNLFSVSD 402 (702)
Q Consensus 349 ~~~~v~~~~~sp~~-~~la~~~~~--------~~~--~~~~~~i~~~~~~~~~------~~~~---------~~~~~~~~ 402 (702)
......++.+.|-+ +.+.+...+ .+. .+.+++...+..+-.. .... ...+....
T Consensus 154 s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~ 233 (1062)
T KOG1912|consen 154 SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYC 233 (1062)
T ss_pred CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHH
Confidence 66667778887743 333331000 000 1122222211111000 0000 00111223
Q ss_pred ceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC--cEEEEEEcCCCCCeE
Q 005315 403 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--HRFAVIHGDSPRPDI 480 (702)
Q Consensus 403 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--~~l~~~~~d~~~~~v 480 (702)
.+++|+|.-+.+++..-.. ++.++++.-. .....+.++ .+.+.-+.|-|++ ..|.+.+.+| .+
T Consensus 234 a~faf~p~~rn~lfi~~pr---------ellv~dle~~-~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG---~l 298 (1062)
T KOG1912|consen 234 AQFAFSPHWRNILFITFPR---------ELLVFDLEYE-CCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNG---RL 298 (1062)
T ss_pred HhhhcChhhhceEEEEecc---------ceEEEcchhh-ceeEEEEec--cCCcceeEeccCCCcceEEEEecCC---eE
Confidence 4556677665544433322 2556665432 223333442 4445556777765 4677888888 89
Q ss_pred EEEEeec
Q 005315 481 SFYSMRT 487 (702)
Q Consensus 481 ~i~d~~~ 487 (702)
.||-.+.
T Consensus 299 tirvrk~ 305 (1062)
T KOG1912|consen 299 TIRVRKE 305 (1062)
T ss_pred EEEEeec
Confidence 9987754
No 274
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=3.6e-10 Score=96.35 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=66.0
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
..++.|||+||+ .+++.+|+.+|..++. .++||.. ++-|||||||+++.+|..|+..|||..+++. .+.|.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~-r~rVE~ 81 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGS-RIRVEL 81 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-----cCCCceEEeccCcccHHHHHhhcCCccccCc-eEEEEe
Confidence 457899999999 9999999999999998 6899864 5689999999999999999999999999988 777765
Q ss_pred cc
Q 005315 135 FD 136 (702)
Q Consensus 135 ~~ 136 (702)
-.
T Consensus 82 S~ 83 (195)
T KOG0107|consen 82 ST 83 (195)
T ss_pred ec
Confidence 33
No 275
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.05 E-value=4.7e-10 Score=113.35 Aligned_cols=75 Identities=21% Similarity=0.357 Sum_probs=69.3
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
-++.|||.||| .+++++|.+||+.+++ .++.|+.|..|++++|||||+|.++++|+.|++.|||..+..+ .++|.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr-~i~V~ 182 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK-RLKVS 182 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc-eeeee
Confidence 57899999999 9999999999999888 5889999998999999999999999999999999999999876 67665
No 276
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.05 E-value=2.6e-10 Score=99.55 Aligned_cols=74 Identities=24% Similarity=0.417 Sum_probs=68.8
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
+.|-|+||- .++.++|..+|+.+|. .+|+||.|+.|+.++|||||-|-...+|+.|++.|+|.-+|++ .|.|.+
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR-elrVq~ 89 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR-ELRVQM 89 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc-eeeehh
Confidence 468899999 9999999999999998 5999999999999999999999999999999999999999998 676653
No 277
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=5.4e-09 Score=104.88 Aligned_cols=116 Identities=12% Similarity=0.193 Sum_probs=82.5
Q ss_pred cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeecc-CCCcccccCCCCCCCCcccceEEEcCC
Q 005315 242 AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWGGG 319 (702)
Q Consensus 242 ~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~s~~ 319 (702)
+|.+ |.|+.|+.+|.+|++||.| ..+.|||.-.-+++..+. +|...+ + +++|-|.
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD----------~r~ivWd~~~~KllhsI~TgHtaNI------------F-svKFvP~ 104 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDD----------TRLIVWDPFEYKLLHSISTGHTANI------------F-SVKFVPY 104 (758)
T ss_pred cccceecceeecCCCCEEeecCCc----------ceEEeecchhcceeeeeecccccce------------e-EEeeecc
Confidence 3555 9999999999999999999 899999998777777664 454444 2 6788875
Q ss_pred -CCcEEEEec-CCeEEEEecCCcc----------cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEE
Q 005315 320 -KDKYFAKLG-KNMISVYETESFT----------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV 384 (702)
Q Consensus 320 -dg~~la~~~-d~~i~v~d~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 384 (702)
+++.++++. |..|++||+...+ ...-...|...|..++-.|++...... ++.|+.++-+.+
T Consensus 105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfws----asEDGtirQyDi 177 (758)
T KOG1310|consen 105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWS----ASEDGTIRQYDI 177 (758)
T ss_pred CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEE----ecCCcceeeecc
Confidence 455777777 9999999998421 122223466678888888888443322 556776664443
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=4.4e-08 Score=101.34 Aligned_cols=280 Identities=15% Similarity=0.226 Sum_probs=178.2
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcE---------------EeeccCCCcccccCCCCCCCC
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV---------------MRDFKGSADEFAVGGTGGVAG 308 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~---------------~~~~~~~~~~~~~~~~~~~~~ 308 (702)
-...|++|+....|||.|+.+ |.++|..+.+... -.++.+|...+.
T Consensus 15 vkL~c~~WNke~gyIAcgG~d----------GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~--------- 75 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGAD----------GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVM--------- 75 (1189)
T ss_pred ceEEEEEEcccCCeEEecccc----------ceeEEEEccccCCcccccccccccccchhhhhccCcceEE---------
Confidence 348899999999999999999 9999998755321 124455555542
Q ss_pred cccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceee--ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEe
Q 005315 309 VSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 385 (702)
Q Consensus 309 ~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 385 (702)
.+.|+. +.+.|.++. +|.|.||-+-.+........ ...-|.+++|..+|..|+. ...|+.+.|-..+
T Consensus 76 ----vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcI-----vYeDGavIVGsvd 145 (1189)
T KOG2041|consen 76 ----VVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICI-----VYEDGAVIVGSVD 145 (1189)
T ss_pred ----EEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEE-----EEccCCEEEEeec
Confidence 678988 888888888 99999999887765433211 2234899999999998887 4466666555444
Q ss_pred cCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecC-------CcceeEE-EecCCCCcee
Q 005315 386 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER-------DIPIEVL-ELDNKNDKII 457 (702)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~~~~-~l~~h~~~v~ 457 (702)
... +-.+.+.......+.|++|.+.++++-..+. ..+|+.... +..+... .+.+....|.
T Consensus 146 GNR---IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange---------~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia 213 (1189)
T KOG2041|consen 146 GNR---IWGKELKGQLLAHVLWSEDLEQALFKKANGE---------THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIA 213 (1189)
T ss_pred cce---ecchhcchheccceeecccHHHHHhhhcCCc---------EEEecccccHHHhhhhceEEeeeeeecCCCcccc
Confidence 322 1111111112224579998887766554433 455554421 0100000 0111123355
Q ss_pred EEEEe--------eCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccC-----
Q 005315 458 AFAWE--------PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKG----- 524 (702)
Q Consensus 458 ~~~~s--------p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~----- 524 (702)
.+.|. |+...|+++...| .+.|..-..... ++-.-.+-.+..+.|+|+|..|++++...
T Consensus 214 ~i~w~~g~~~~v~pdrP~lavcy~nG---r~QiMR~eND~~-----Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~ 285 (1189)
T KOG2041|consen 214 EIEWNTGPYQPVPPDRPRLAVCYANG---RMQIMRSENDPE-----PVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEP 285 (1189)
T ss_pred ceeeccCccccCCCCCCEEEEEEcCc---eehhhhhcCCCC-----CeEEecccEeecceecCCCcEEEEccCcccccCc
Confidence 56663 5778899998888 677765432221 22222245678899999999999987632
Q ss_pred -CCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 525 -FNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 525 -~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
..+.|.||..- |+.+.+ .....|++++|-..|-.+|.+.. +.+++=++
T Consensus 286 ~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLriA~Avd------sfiyfanI 336 (1189)
T KOG2041|consen 286 TDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRIAIAVD------SFIYFANI 336 (1189)
T ss_pred cccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEEEEEec------ceEEEEee
Confidence 22467777654 445444 45578999999999988888876 56655443
No 279
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=5.3e-09 Score=103.65 Aligned_cols=286 Identities=15% Similarity=0.183 Sum_probs=177.5
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccC-CCcccccCCCCCCCCcccceEEEcCC-
Q 005315 243 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG-SADEFAVGGTGGVAGVSWPVFRWGGG- 319 (702)
Q Consensus 243 ~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~s~~- 319 (702)
|.+ |..+.|...|..|++++.+ ..|.+||..+++....|.. |...+- .-+|-|.
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD----------~~vv~WdW~~~~~~l~f~SGH~~Nvf-------------QaKFiP~s 197 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDD----------LQVVVWDWVSGSPKLSFESGHCNNVF-------------QAKFIPFS 197 (559)
T ss_pred CCCccceeeecccCceeeccCcc----------ceEEeehhhccCcccccccccccchh-------------hhhccCCC
Confidence 554 9999999999999999999 8999999999887766654 433331 1234442
Q ss_pred CCcEEEEec-CCeEEEEecCCc-ccccce--eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee
Q 005315 320 KDKYFAKLG-KNMISVYETESF-TLIDKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 395 (702)
Q Consensus 320 dg~~la~~~-d~~i~v~d~~~~-~~~~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 395 (702)
+.+-+++++ ||.+++-.+... .+...+ ..|.+.|..++.-|+..+-.+. ++.++ .+..+++....
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S----~geD~--~v~~~Dlr~~~----- 266 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLS----CGEDA--VVFHIDLRQDV----- 266 (559)
T ss_pred CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccc----ccccc--ceeeeeeccCC-----
Confidence 455677777 999998776533 332222 2355678888888887655431 33333 33333332211
Q ss_pred eecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC-cEEEEEEcC
Q 005315 396 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGD 474 (702)
Q Consensus 396 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d 474 (702)
|.... ++... ..+ . .-...+++..|.. ..||+++.|
T Consensus 267 -------------pa~~~--~cr~~--------------------~~~-~-------~v~L~~Ia~~P~nt~~faVgG~d 303 (559)
T KOG1334|consen 267 -------------PAEKF--VCREA--------------------DEK-E-------RVGLYTIAVDPRNTNEFAVGGSD 303 (559)
T ss_pred -------------cccee--eeecc--------------------CCc-c-------ceeeeeEecCCCCccccccCChh
Confidence 00000 00000 000 0 1134566777744 488888888
Q ss_pred CCCCeEEEEEeecccCcCceEEEEEcCC--------CceeEEEEccCCCEEEEEeccCCCceEEEEECC--Cc-------
Q 005315 475 SPRPDISFYSMRTAQHAGRVSKLTTLKG--------KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--EL------- 537 (702)
Q Consensus 475 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~--------~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~--~~------- 537 (702)
. -+++||.+.-.....+..+..+.. -.|++++||.+|.-|+++-. |-.|++|.-. .+
T Consensus 304 q---f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn---De~IYLF~~~~~~G~~p~~~s 377 (559)
T KOG1334|consen 304 Q---FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN---DEDIYLFNKSMGDGSEPDPSS 377 (559)
T ss_pred h---hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec---ccceEEeccccccCCCCCCCc
Confidence 8 889999875433222222333221 15899999987766655555 7889998543 12
Q ss_pred ---c---eeeeccc--Cceeee-EECCCCCEEEEEEeecccccccEEEEEeccceeeee---ccccEeeEEEeeCCCCCC
Q 005315 538 ---E---TMATAEH--FMATDV-EWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LKDHFFQFLWRPRPPSFL 605 (702)
Q Consensus 538 ---~---~~~~~~~--~~i~~~-~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~---~~~~i~~~~w~p~~~~l~ 605 (702)
. .+..+|. ..|-.+ -|-|...|+++|+. =|.|.||+-.+..+... ...-|.++.=+|.-+.|+
T Consensus 378 ~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD-----CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 378 PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD-----CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred chhhccchhhcccccccccceeeeccCccceEEecCc-----cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence 1 1122333 234454 36889999999998 89999999886544332 223688888899989999
Q ss_pred ChhhHHHHHHH
Q 005315 606 TPEKEEEIAKN 616 (702)
Q Consensus 606 s~~~d~~i~~~ 616 (702)
|++-+..||.+
T Consensus 453 sSGid~DVKIW 463 (559)
T KOG1334|consen 453 SSGIDHDVKIW 463 (559)
T ss_pred ccCCccceeee
Confidence 99888777643
No 280
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.00 E-value=8.7e-10 Score=114.83 Aligned_cols=75 Identities=31% Similarity=0.480 Sum_probs=69.7
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.++|||+||| .+++++|..+|+.+|+ ..+.|+.|+.+|+++|||||+|.++++|..|++.|||..+.++ .+.|..
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~-~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK-TIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCe-eEEEEe
Confidence 5799999999 9999999999999998 5899999988999999999999999999999999999999877 777753
No 281
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.96 E-value=1.3e-09 Score=116.09 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=71.3
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
...+.|||+||| .+++++++++|..+|. .++.|+.|+.||++||||||+|.++++|..|++.|||..++++ .++|..
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR-~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR-NIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc-eeeecc
Confidence 356799999999 9999999999999998 5899999999999999999999999999999999999999877 788873
No 282
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.96 E-value=2.3e-09 Score=82.07 Aligned_cols=66 Identities=21% Similarity=0.429 Sum_probs=58.9
Q ss_pred EEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 005315 62 IVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 128 (702)
Q Consensus 62 ~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h 128 (702)
|+|.||| .++++++..+|+.++. ..+.|+.+++ |.++|+|||+|.++++|..|+..++|..+++++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 7899999 9999999999998876 4899999975 999999999999999999999999999998873
No 283
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.95 E-value=3.2e-08 Score=108.61 Aligned_cols=259 Identities=9% Similarity=0.113 Sum_probs=156.4
Q ss_pred EEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccc---c--ceee--ccC
Q 005315 280 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI---D--KKSL--KVE 351 (702)
Q Consensus 280 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~---~--~~~~--~~~ 351 (702)
|+. .|..+..+..|...+. .++.++.++.+|++++ ||+|++|++.....- . .... ...
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~-------------k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~s 1099 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVI-------------KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGS 1099 (1431)
T ss_pred CCc-cceEeehhhhcccccc-------------ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCC
Confidence 774 7888888888876652 2344441568999999 999999998742211 1 1112 223
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc-c----eeeeeeec-cccccee-EE-ccCCC-EEEEEEcccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK-E----ELRQKNLF-SVSDCKM-YW-QSSGD-YLAVKVDRYT 422 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~-~----~~~~~~~~-~~~~~~~-~~-s~~g~-~l~~~~~~~~ 422 (702)
.+..+...+.+..+|+ ++.||.+++..++.... + ..+..+.. ....+.| ++ +..+. .|++++.-.
T Consensus 1100 r~~~vt~~~~~~~~Av-----~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~- 1173 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAV-----STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS- 1173 (1431)
T ss_pred ceEEEEeccCCCeEEE-----EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEecc-
Confidence 5888899999999999 77888888777665211 1 11111111 1112222 12 12233 444444432
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-
Q 005315 423 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK- 501 (702)
Q Consensus 423 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~- 501 (702)
.+..|+++..... ..++.....+.|++++.+|.+.++++|+..| .+.+||++-+. ++.+..
T Consensus 1174 --------~iv~~D~r~~~~~-w~lk~~~~hG~vTSi~idp~~~WlviGts~G---~l~lWDLRF~~------~i~sw~~ 1235 (1431)
T KOG1240|consen 1174 --------RIVSWDTRMRHDA-WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG---QLVLWDLRFRV------PILSWEH 1235 (1431)
T ss_pred --------ceEEecchhhhhH-HhhhcCccccceeEEEecCCceEEEEecCCc---eEEEEEeecCc------eeecccC
Confidence 3667776542211 1122233478999999999999999999999 89999997543 333332
Q ss_pred --CCceeEEEEccC---CCEEEEEeccCCCceEEEEECCCcceeee---c-cc------C-----------ceeeeEECC
Q 005315 502 --GKQANALFWSPS---GRFIVLAGLKGFNGQLEFYNVDELETMAT---A-EH------F-----------MATDVEWDP 555 (702)
Q Consensus 502 --~~~v~~~~~spd---g~~l~~~~~~~~dg~v~i~d~~~~~~~~~---~-~~------~-----------~i~~~~~sp 555 (702)
..+++.+...|- ....++++.. ..+.|.+|++.++..-.. . .. . ......+.-
T Consensus 1236 P~~~~i~~v~~~~~~~~~S~~vs~~~~-~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~ 1314 (1431)
T KOG1240|consen 1236 PARAPIRHVWLCPTYPQESVSVSAGSS-SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE 1314 (1431)
T ss_pred cccCCcceEEeeccCCCCceEEEeccc-CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc
Confidence 125666666653 3466665542 278999999987533221 1 00 0 011223333
Q ss_pred CCCEEEEEEeecccccccEEEEEeccc
Q 005315 556 TGRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 556 dg~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
-+.+++++++ |..|+.||....
T Consensus 1315 ~~~~~ltggs-----d~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1315 KNGFLLTGGS-----DMKIRKWDPTRP 1336 (1431)
T ss_pred CCceeeecCC-----ccceeeccCCCc
Confidence 4567888888 999999998643
No 284
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.94 E-value=2.3e-09 Score=114.25 Aligned_cols=75 Identities=23% Similarity=0.235 Sum_probs=70.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++|+++|+.+|+ .++.|+.|+.+|++||||||+|.+.++|..|+..|||+.++++ .|+|.+
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr-~LrV~k 280 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-YLRVGK 280 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCe-EEEEEe
Confidence 4689999999 9999999999999998 6899999998999999999999999999999999999999988 888874
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=2.7e-07 Score=96.77 Aligned_cols=136 Identities=17% Similarity=0.261 Sum_probs=90.6
Q ss_pred EEEeCCceEE-EecCCCCCCCcccccCCCcccceEEECCCC------------cEEEEEeCCc-eEEeecCcCcceeeee
Q 005315 176 VIRSGTDTEV-LWNDARHLKPEPVYKRSYWTESFVQWSPLG------------TYLATVHRQG-AAVWGGANTFNRLMRY 241 (702)
Q Consensus 176 ~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg------------~~lat~~~~~-i~iw~~~~~~~~~~~~ 241 (702)
++.+|.+..+ +-+. ...+.+..+..|+..|+.|.|+|-. -.||++...| |+|||.. ....+..+
T Consensus 28 LiAygshslV~VVDs-~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~-~~s~~~~l 105 (1062)
T KOG1912|consen 28 LIAYGSHSLVSVVDS-RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV-LASVINWL 105 (1062)
T ss_pred eEEEecCceEEEEeh-hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh-hhhhhhhh
Confidence 3344433333 4444 5778888899999999999998742 2577777777 9999999 77777777
Q ss_pred cCCC--eeEEEecC---CC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEE
Q 005315 242 AHPQ--VKLIDFSP---GE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFR 315 (702)
Q Consensus 242 ~~~~--v~~i~fSp---dg-~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 315 (702)
.|+. +..++|-| +. ..|+..... ..|.+|+..+|+.+........... |+.
T Consensus 106 ~~~~~~~qdl~W~~~rd~Srd~LlaIh~s----------s~lvLwntdtG~k~Wk~~ys~~iLs-------------~f~ 162 (1062)
T KOG1912|consen 106 SHSNDSVQDLCWVPARDDSRDVLLAIHGS----------STLVLWNTDTGEKFWKYDYSHEILS-------------CFR 162 (1062)
T ss_pred cCCCcchhheeeeeccCcchheeEEecCC----------cEEEEEEccCCceeeccccCCccee-------------eee
Confidence 6553 88888765 34 355666665 7899999999998877665544321 566
Q ss_pred EcCCCCcEEEEec-CCeEEEEe
Q 005315 316 WGGGKDKYFAKLG-KNMISVYE 336 (702)
Q Consensus 316 ~s~~dg~~la~~~-d~~i~v~d 336 (702)
+.|-|.+.+...+ .|.+.+-+
T Consensus 163 ~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 163 VDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred eCCCCcceEEEEccCceEEEEe
Confidence 6553344444444 55555544
No 286
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.92 E-value=4.1e-09 Score=106.59 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=70.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe-eEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA-HIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~-h~~~v~~~ 135 (702)
++.|||.||| .+++++|+++|+.+++ ..+.|+.|..+|++||||||+|.+.++|++|++.||+..+++. ..+.|...
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 5689999999 9999999999999888 4788999988999999999999999999999999999998654 57777754
Q ss_pred cC
Q 005315 136 DD 137 (702)
Q Consensus 136 ~d 137 (702)
..
T Consensus 273 ~~ 274 (346)
T TIGR01659 273 EE 274 (346)
T ss_pred Cc
Confidence 43
No 287
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.1e-07 Score=92.08 Aligned_cols=123 Identities=11% Similarity=0.168 Sum_probs=92.5
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccC
Q 005315 411 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 490 (702)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 490 (702)
...|++++.-+ .+++|+.+..-.|+..+.+. ..+++++...|.|++++++..-+ .+..||++.+.
T Consensus 216 ~~~fat~T~~h---------qvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g---~l~~FD~r~~k- 280 (412)
T KOG3881|consen 216 NYKFATITRYH---------QVRLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNTKG---QLAKFDLRGGK- 280 (412)
T ss_pred CceEEEEecce---------eEEEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEecccc---hhheecccCce-
Confidence 34555555533 38899988777777666653 67899999999999999998888 89999998765
Q ss_pred cCceEEEEE-cC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-cccCceeeeEECCC
Q 005315 491 AGRVSKLTT-LK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPT 556 (702)
Q Consensus 491 ~~~~~~~~~-~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~~i~~~~~spd 556 (702)
.+.. +. .+.+.++..+|.++++++++. |..|+|+|+.+.+++.. .-...++++-+.++
T Consensus 281 -----l~g~~~kg~tGsirsih~hp~~~~las~GL---DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 281 -----LLGCGLKGITGSIRSIHCHPTHPVLASCGL---DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred -----eeccccCCccCCcceEEEcCCCceEEeecc---ceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 3332 33 347899999999999999999 99999999998766654 22345555555543
No 288
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.4e-07 Score=85.39 Aligned_cols=159 Identities=13% Similarity=0.112 Sum_probs=114.8
Q ss_pred CCCCCCCCCCCccccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eE
Q 005315 149 APPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AA 227 (702)
Q Consensus 149 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~ 227 (702)
++|-.....+...+.+...||.....++ .+||+....|+. ..++....|.+|+..+.|+.--.....+.+|+.|| ++
T Consensus 104 ~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dl-E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvR 181 (325)
T KOG0649|consen 104 KIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDL-EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVR 181 (325)
T ss_pred cCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEe-cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEE
Confidence 3444444445566777778887776654 448999999999 68888899999999999999855555788999999 88
Q ss_pred EeecCcCcceeeeec---CCC-----ee--EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcc
Q 005315 228 VWGGANTFNRLMRYA---HPQ-----VK--LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE 297 (702)
Q Consensus 228 iw~~~~~~~~~~~~~---~~~-----v~--~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~ 297 (702)
|||.. +.+.+..+. ++. +. -.++.-+...|+.|+.. .+.+|++++.++...|..+...
T Consensus 182 vWd~k-t~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-----------~lslwhLrsse~t~vfpipa~v 249 (325)
T KOG0649|consen 182 VWDTK-TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-----------KLSLWHLRSSESTCVFPIPARV 249 (325)
T ss_pred EEecc-ccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-----------ceeEEeccCCCceEEEecccce
Confidence 99999 777666552 222 11 13344467788888776 5889999999988888765443
Q ss_pred cccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecC
Q 005315 298 FAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE 338 (702)
Q Consensus 298 ~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~ 338 (702)
. .+.| +.+.+..++ .+.+.-|.+.
T Consensus 250 ~--------------~v~F---~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 250 H--------------LVDF---VDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred e--------------Eeee---ecceEEEeccccceeeeeec
Confidence 3 3455 445566666 7788888775
No 289
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.90 E-value=3.4e-07 Score=95.54 Aligned_cols=211 Identities=14% Similarity=0.176 Sum_probs=134.6
Q ss_pred cEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec---C--CeEEEEecCCcccccceeec
Q 005315 275 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---K--NMISVYETESFTLIDKKSLK 349 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~---d--~~i~v~d~~~~~~~~~~~~~ 349 (702)
..+.+-|.. |...+.+........ ..+|+| +++.++... . ..+.++++.++....... .
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~-------------~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~ 236 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLIL-------------TPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-F 236 (425)
T ss_pred ceEEEEccC-CcceeEecccCccee-------------ccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-c
Confidence 456666643 555555544433321 349999 999887775 3 358888988775432221 1
Q ss_pred cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccc
Q 005315 350 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 429 (702)
Q Consensus 350 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 429 (702)
...-...+|||||+.|++. ...++...|+++++..+...+ .+-.........|+|+|+++++.+++...
T Consensus 237 ~g~~~~P~fspDG~~l~f~----~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~------ 305 (425)
T COG0823 237 NGNNGAPAFSPDGSKLAFS----SSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGR------ 305 (425)
T ss_pred CCccCCccCCCCCCEEEEE----ECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCC------
Confidence 1223457899999999985 346788899999998877333 23233334466899999999999887542
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC-ceeEE
Q 005315 430 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-QANAL 508 (702)
Q Consensus 430 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~~ 508 (702)
..+|.++..+.....++.. .+.-....|||||++|++.+..+..-.|.++++.++.. +..+... .....
T Consensus 306 --p~I~~~~~~g~~~~riT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~------~~~lt~~~~~e~p 375 (425)
T COG0823 306 --PQIYLYDLEGSQVTRLTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK------IRILTSTYLNESP 375 (425)
T ss_pred --cceEEECCCCCceeEeecc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc------EEEccccccCCCC
Confidence 3666666655555445542 22222789999999999998543212466666644331 3333333 34567
Q ss_pred EEccCCCEEEEEec
Q 005315 509 FWSPSGRFIVLAGL 522 (702)
Q Consensus 509 ~~spdg~~l~~~~~ 522 (702)
.|+|+|+.+...+.
T Consensus 376 s~~~ng~~i~~~s~ 389 (425)
T COG0823 376 SWAPNGRMIMFSSG 389 (425)
T ss_pred CcCCCCceEEEecc
Confidence 89999999887764
No 290
>PLN03213 repressor of silencing 3; Provisional
Probab=98.90 E-value=3.3e-09 Score=104.71 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=68.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCH--HHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTP--QEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~--~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
...|||+||+ .|++++|+.+|..+|. .++.|| ++|| ||||||+|.++ .++.+||..|||..+.++ .|+|++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR-~LKVNK 84 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG-RLRLEK 84 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCc-eeEEee
Confidence 4689999999 9999999999999999 589999 5688 99999999987 789999999999999988 899887
Q ss_pred ccC--ccccc
Q 005315 135 FDD--FDKFM 142 (702)
Q Consensus 135 ~~d--~~~~~ 142 (702)
... +.|+.
T Consensus 85 AKP~YLeRLk 94 (759)
T PLN03213 85 AKEHYLARLK 94 (759)
T ss_pred ccHHHHHHHH
Confidence 553 44443
No 291
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.88 E-value=2.4e-07 Score=96.64 Aligned_cols=225 Identities=18% Similarity=0.313 Sum_probs=140.4
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 431 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 431 (702)
.+..-.|+|+++.+++..-.. .+..+++++++...+.....+ +........|+|+|+.|++...+.. +
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~---~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg--------~ 261 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFEL---GGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG--------S 261 (425)
T ss_pred ceeccccCcCCCceEEEEEec---CCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC--------C
Confidence 366779999999988764332 222678888887765444333 3444445689999999999877642 2
Q ss_pred EEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEc
Q 005315 432 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 511 (702)
Q Consensus 432 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 511 (702)
..||.++..+..... +..-.+.-..-.|+|+|+++++.+..++.+.|.+++++.... ...+.....-....||
T Consensus 262 ~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-----~riT~~~~~~~~p~~S 334 (425)
T COG0823 262 PDIYLMDLDGKNLPR--LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-----TRLTFSGGGNSNPVWS 334 (425)
T ss_pred ccEEEEcCCCCccee--cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----eEeeccCCCCcCccCC
Confidence 455555543333222 333234444789999999999999988777888888865442 2223333333488999
Q ss_pred cCCCEEEEEeccCCCce--EEEEECCCcceee-ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeeec
Q 005315 512 PSGRFIVLAGLKGFNGQ--LEFYNVDELETMA-TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTL 588 (702)
Q Consensus 512 pdg~~l~~~~~~~~dg~--v~i~d~~~~~~~~-~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~ 588 (702)
|||++|+..+.. .|. |.+.++.++..+. ...........|.|+|+.+...+... .+..+..-+..|+.....+
T Consensus 335 pdG~~i~~~~~~--~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~--~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 335 PDGDKIVFESSS--GGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG--GGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred CCCCEEEEEecc--CCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC--CCceEEEeeccceeEEEEe
Confidence 999999998741 344 6667776554222 23334455789999999998888730 1222222333455443332
Q ss_pred c--ccEeeEEEee
Q 005315 589 K--DHFFQFLWRP 599 (702)
Q Consensus 589 ~--~~i~~~~w~p 599 (702)
. ..+...+|+|
T Consensus 411 ~~~~~~~~p~w~~ 423 (425)
T COG0823 411 LADGDVRVPAWSP 423 (425)
T ss_pred ccCcceecccccC
Confidence 2 3555556655
No 292
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=2.7e-09 Score=95.96 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=58.5
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCC
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 122 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 122 (702)
+.|||+||| .+..+.|++-|+.+|+ ....+..|+.||+||||+||+|.+.+.|..|++..|=.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~pi 77 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPI 77 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCc
Confidence 689999999 9999999999999999 58889999999999999999999999999999886644
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.87 E-value=1.9e-06 Score=80.95 Aligned_cols=145 Identities=16% Similarity=0.203 Sum_probs=85.9
Q ss_pred eEEECCCCcEEEEEeCCceEEeecCcCccee---eee---cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005315 208 FVQWSPLGTYLATVHRQGAAVWGGANTFNRL---MRY---AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 281 (702)
Q Consensus 208 ~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~---~~~---~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd 281 (702)
.++.+++|+.||..-...|-|-.....+..+ ... ++|.-+-++||||+..||.+... |+|++||
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~----------G~i~vfd 71 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST----------GTIRVFD 71 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC----------CeEEEEe
Confidence 3577899999999988887777655333322 222 35568999999999999999999 9999999
Q ss_pred ccCCcEEeeccCCCcccccCCCCCCCCcccc----eEEEcCCCCcEEEEecCCeEEEEecCCcc-----cccceee---c
Q 005315 282 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWP----VFRWGGGKDKYFAKLGKNMISVYETESFT-----LIDKKSL---K 349 (702)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~----~~~~s~~dg~~la~~~d~~i~v~d~~~~~-----~~~~~~~---~ 349 (702)
+ .|..+..+....... ......+.|+.+. .-.|+. .+|+..-.|.++-|-+..+. ......+ .
T Consensus 72 l-~g~~lf~I~p~~~~~-~d~~~Aiagl~Fl~~~~s~~ws~---ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y 146 (282)
T PF15492_consen 72 L-MGSELFVIPPAMSFP-GDLSDAIAGLIFLEYKKSAQWSY---ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY 146 (282)
T ss_pred c-ccceeEEcCcccccC-CccccceeeeEeeccccccccce---eEEEEeccceeeeEEEEcccCCcceeeEEEEecccC
Confidence 7 556565555432111 0111222322111 112222 34444447777766653221 1111222 2
Q ss_pred cCCeeEEEeCCCCCeEEE
Q 005315 350 VENVMDFSWSPTDPIISL 367 (702)
Q Consensus 350 ~~~v~~~~~sp~~~~la~ 367 (702)
..+|.++.++|..+.|++
T Consensus 147 p~Gi~~~vy~p~h~LLlV 164 (282)
T PF15492_consen 147 PHGINSAVYHPKHRLLLV 164 (282)
T ss_pred CCceeEEEEcCCCCEEEE
Confidence 236888888888777766
No 294
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.86 E-value=9.1e-09 Score=96.42 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=66.7
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++++.+|+.+|+ ..+.|+.|+ .++|||||+|.++++|..|+. |||..+.++ .+.|+...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr-~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQ-SVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCc-eEEEEecc
Confidence 4689999999 9999999999999998 689999986 368999999999999999995 999999887 88888755
Q ss_pred Cc
Q 005315 137 DF 138 (702)
Q Consensus 137 d~ 138 (702)
+.
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 43
No 295
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.85 E-value=5.1e-09 Score=111.55 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=67.3
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.++.|||+||| .+++++|..+|+.++. ..+.|++| .+|++||||||+|.+.++|++|++.||++.+.....+.|+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 46899999999 9999999999999887 57899999 69999999999999999999999999999886444555543
No 296
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=5.2e-09 Score=94.78 Aligned_cols=75 Identities=31% Similarity=0.499 Sum_probs=70.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.++++|.-|| ..++++++.||..+|+ .++.+..|+-+|.+.||+||.|.++++|++|+..|||.+|..+ +++|+-
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K-TIKVSy 117 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK-TIKVSY 117 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccc-eEEEEe
Confidence 4789999999 9999999999999999 6999999999999999999999999999999999999999877 888874
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.80 E-value=5.7e-06 Score=80.34 Aligned_cols=249 Identities=14% Similarity=0.181 Sum_probs=150.5
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
...++.+|....++.....+ .....+||..+|+.+..+..+....-. | .-.||+ ||++|.
T Consensus 7 gH~~a~~p~~~~avafaRRP--------G~~~~v~D~~~g~~~~~~~a~~gRHFy-------G----Hg~fs~-dG~~Ly 66 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRP--------GTFALVFDCRTGQLLQRLWAPPGRHFY-------G----HGVFSP-DGRLLY 66 (305)
T ss_pred ccceeeCCCCCeEEEEEeCC--------CcEEEEEEcCCCceeeEEcCCCCCEEe-------c----CEEEcC-CCCEEE
Confidence 56788999655544444432 145789999999988877665544311 1 458999 999998
Q ss_pred Eec------CCeEEEEecC-CcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec
Q 005315 326 KLG------KNMISVYETE-SFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 398 (702)
Q Consensus 326 ~~~------d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 398 (702)
+.. .|.|-|||.. +...+.....+--+-..+.+.|||+.|++ .++-+.- ...+.+. ..++.
T Consensus 67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvV-------ANGGI~T---hpd~GR~--kLNl~ 134 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVV-------ANGGIET---HPDSGRA--KLNLD 134 (305)
T ss_pred EeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEE-------EcCCCcc---CcccCce--ecChh
Confidence 875 4789999998 44444444333334578899999988887 2222210 0000000 00000
Q ss_pred ccccceeEEccCCCEEEEEEcccccccccccccEEEEEE-ecCCcceeEEEe--cCCCCceeEEEEeeCCcEEEEEEcCC
Q 005315 399 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI-KERDIPIEVLEL--DNKNDKIIAFAWEPKGHRFAVIHGDS 475 (702)
Q Consensus 399 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~~l--~~h~~~v~~~~~sp~g~~l~~~~~d~ 475 (702)
.. .| .|-.+ ...+.-+....+ .-|.-.|..++++++|..++..-..+
T Consensus 135 tM-------~p-----------------------sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 135 TM-------QP-----------------------SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG 184 (305)
T ss_pred hc-------CC-----------------------ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCC
Confidence 00 00 01111 111222333444 23677899999999987666554443
Q ss_pred C----CCeEEEEEeecccCcCceEEEEEcC-------CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc
Q 005315 476 P----RPDISFYSMRTAQHAGRVSKLTTLK-------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE 544 (702)
Q Consensus 476 ~----~~~v~i~d~~~~~~~~~~~~~~~~~-------~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~ 544 (702)
. .+-|-+++.... . .....+ .+.+-+|+++++|.++++++- ..|.+.+||..+++++....
T Consensus 185 ~~~~~~PLva~~~~g~~-----~-~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 185 DPGDAPPLVALHRRGGA-----L-RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CCCccCCeEEEEcCCCc-----c-eeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEEECCCCCEeeccc
Confidence 2 123444443211 0 111111 245889999999998877664 26899999999999998877
Q ss_pred cCceeeeEECCCCCEEEEEEe
Q 005315 545 HFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 545 ~~~i~~~~~spdg~~l~t~s~ 565 (702)
-..+..++-.+++ ++++.+.
T Consensus 257 l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 257 LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred cCceeeeeecCCc-eEEeCCC
Confidence 7788888888888 6666555
No 298
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=2.8e-06 Score=99.43 Aligned_cols=119 Identities=10% Similarity=0.112 Sum_probs=78.9
Q ss_pred ceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCce-------EEEEEcC----------CCceeEEEEccCCCEE
Q 005315 455 KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV-------SKLTTLK----------GKQANALFWSPSGRFI 517 (702)
Q Consensus 455 ~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~-------~~~~~~~----------~~~v~~~~~spdg~~l 517 (702)
....++++|+|++|+++.... +.|++||+.++...... ..+..+. ......++++|+|+.+
T Consensus 741 ~P~GIavspdG~~LYVADs~n--~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LY 818 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSES--SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIY 818 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCC--CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEE
Confidence 456799999998777665543 28999998754310000 0000110 0123578999999876
Q ss_pred EEEeccCCCceEEEEECCCcceeeecc---------------cCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc
Q 005315 518 VLAGLKGFNGQLEFYNVDELETMATAE---------------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 518 ~~~~~~~~dg~v~i~d~~~~~~~~~~~---------------~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
++-.. ++.|++||..++.+..... -.....++++++|+.+++-+. ++.|++|++...
T Consensus 819 VADs~---N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~-----Nn~Irvid~~~~ 890 (1057)
T PLN02919 819 VADSY---NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN-----NSLIRYLDLNKG 890 (1057)
T ss_pred EEECC---CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC-----CCEEEEEECCCC
Confidence 66665 8999999998766543211 124568999999997776666 899999998754
Q ss_pred e
Q 005315 583 L 583 (702)
Q Consensus 583 ~ 583 (702)
.
T Consensus 891 ~ 891 (1057)
T PLN02919 891 E 891 (1057)
T ss_pred c
Confidence 3
No 299
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=1e-08 Score=83.18 Aligned_cols=69 Identities=28% Similarity=0.347 Sum_probs=65.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
+=+|+|.|+- ..+++++...|..+|+ .+|++.+|+.||-.||||.|+|++.++|+.|+..+||..|-+.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 5689999999 9999999999999999 6999999999999999999999999999999999999988765
No 300
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.77 E-value=1.4e-08 Score=103.70 Aligned_cols=76 Identities=24% Similarity=0.316 Sum_probs=71.3
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
+.|||+|+| .++++.+..+|+..+. .++.+..|++||++|||||++|.+.++|..|+++|||+++.++ .|+|+.-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr-~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGR-KLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCc-eEEeeccc
Confidence 899999999 9999999999998877 6899999999999999999999999999999999999999988 88887544
No 301
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.76 E-value=2.7e-07 Score=100.23 Aligned_cols=134 Identities=15% Similarity=0.226 Sum_probs=106.4
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--cee
Q 005315 429 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QAN 506 (702)
Q Consensus 429 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~ 506 (702)
++++.+|+......|. .+.+|.+.|.++.|+-+|+++++.+.|. ++++|++.+.... . .+.-+| .+.
T Consensus 154 ~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDR---siRlW~i~s~~~~----~-~~~fgHsaRvw 222 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGRYIASVSDDR---SIRLWPIDSREVL----G-CTGFGHSARVW 222 (967)
T ss_pred cccEEEEeccccCCcc---eecccCCceEEEEEccCCcEEEEEecCc---ceeeeeccccccc----C-cccccccceeE
Confidence 4558889888666664 6779999999999999999999999999 9999999876532 1 122234 588
Q ss_pred EEEEccCCCEEEEEeccCCCceEEEEECCCcceee-ecc-cCceeeeEECCCCCEEEEEEeecccccccEEEEEeccce
Q 005315 507 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-TAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL 583 (702)
Q Consensus 507 ~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~-~~~-~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~ 583 (702)
.++|.|+ .+++++. |.+.++|+.+..++-. ..| ...+..++..++...++|++. |+++++|++.++.
T Consensus 223 ~~~~~~n--~i~t~ge---dctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~-----Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 223 ACCFLPN--RIITVGE---DCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN-----DSTLKLWDLNGRG 291 (967)
T ss_pred EEEeccc--eeEEecc---ceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeecc-----Ccchhhhhhhccc
Confidence 9999998 8999988 9999999776333221 222 367899999999999999999 9999999987653
No 302
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2.7e-06 Score=87.19 Aligned_cols=197 Identities=12% Similarity=0.144 Sum_probs=137.3
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccc-----------eEEE----
Q 005315 252 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP-----------VFRW---- 316 (702)
Q Consensus 252 Spdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~-----------~~~~---- 316 (702)
.|-+.|+|....+ |.++||++.+++....|....... +.-....|. +..|
T Consensus 2 ~~~~~~~A~~~~~----------g~l~iw~t~~~~~~~e~~p~~~~s-----~t~~~~~w~L~~~~s~~k~~~~~~~~~~ 66 (541)
T KOG4547|consen 2 PPALDYFALSTGD----------GRLRIWDTAKNQLQQEFAPIASLS-----GTCTYTKWGLSADYSPMKWLSLEKAKKA 66 (541)
T ss_pred CchhheEeecCCC----------CeEEEEEccCceeeeeeccchhcc-----CcceeEEEEEEeccchHHHHhHHHHhhc
Confidence 4557899998888 999999999998777665432111 000011121 1111
Q ss_pred cCCCCcEEEEec-CCeEEEEecCCccccccee--eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 317 GGGKDKYFAKLG-KNMISVYETESFTLIDKKS--LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 317 s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
+. |-..++.+. .|.|.+|+...+++..+.. .|.++|.++.|+.+-.+|.+ .+...++..|+......++
T Consensus 67 s~-~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS-------~~ad~~v~~~~~~~~~~~~ 138 (541)
T KOG4547|consen 67 SL-DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYS-------VGADLKVVYILEKEKVIIR 138 (541)
T ss_pred cC-CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEe-------cCCceeEEEEecccceeee
Confidence 22 334566666 8999999999888776654 47778999999988888877 4555677777777777666
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC-----CcEE
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-----GHRF 468 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-----g~~l 468 (702)
.....+.....+..+|||..|++++.. +.+|++..+.. ...+++|.++|++++|--+ |.++
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~as~~-----------ik~~~~~~kev---v~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLTASRQ-----------IKVLDIETKEV---VITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEeccce-----------EEEEEccCceE---EEEecCCCcceEEEEEEEecccccccee
Confidence 665555566667889999999887654 78999886543 3678899999999999877 7777
Q ss_pred EEEEcCCCCCeEEEEEeec
Q 005315 469 AVIHGDSPRPDISFYSMRT 487 (702)
Q Consensus 469 ~~~~~d~~~~~v~i~d~~~ 487 (702)
.++..-.. -+.+|-++.
T Consensus 205 Lssa~~~r--~i~~w~v~~ 221 (541)
T KOG4547|consen 205 LSSAAAER--GITVWVVEK 221 (541)
T ss_pred eecccccc--ceeEEEEEc
Confidence 77655321 466776654
No 303
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=2.4e-08 Score=92.77 Aligned_cols=74 Identities=24% Similarity=0.324 Sum_probs=68.1
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 130 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~ 130 (702)
+--++|||+-|+ .++|++|++.|..+|. ..|.|..|..||+++|||||+|+++.+...|.+..+|.++|++..|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 344799999999 9999999999999998 5899999999999999999999999999999999999999988433
No 304
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.76 E-value=4.3e-08 Score=90.23 Aligned_cols=74 Identities=9% Similarity=0.086 Sum_probs=66.0
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
+.+|+|+||+ .+++++|+++|+..|+ .+++|+.| +.++|||||+|.+++.|..|+ .|||..|... .+.|..+.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~-~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQ-RVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCc-eEEEEeCc
Confidence 4689999999 9999999999999999 68999987 466799999999999998887 8999999877 78888777
Q ss_pred C
Q 005315 137 D 137 (702)
Q Consensus 137 d 137 (702)
+
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 6
No 305
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=4.2e-08 Score=75.86 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=69.0
Q ss_pred cCCCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 55 ESGFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 55 ~~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
+.-...++||.||| .++.++.-.||+.+|. .-|.+- .+..|+|-|||.|++..+|++|++.|+|+.++.. -+.|
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG---~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r-yl~v 89 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIG---NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR-YLVV 89 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEec---CccCcCceEEEEehHhhhHHHHHHHhcccccCCc-eEEE
Confidence 33345699999999 9999999999998887 234444 3678999999999999999999999999999977 7777
Q ss_pred EeccCccccc
Q 005315 133 NMFDDFDKFM 142 (702)
Q Consensus 133 ~~~~d~~~~~ 142 (702)
--++..+.+.
T Consensus 90 lyyq~~~~~~ 99 (124)
T KOG0114|consen 90 LYYQPEDAFK 99 (124)
T ss_pred EecCHHHHHH
Confidence 7666655544
No 306
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.9e-08 Score=92.04 Aligned_cols=73 Identities=27% Similarity=0.323 Sum_probs=67.7
Q ss_pred EEEECCCC-CCChhhHHHhHhccccc-cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIKED-GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~~~-~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.|+|+-|. .++-++|+.-|..+|+. +..+..|..|+|+|||+||.|-+.++|+.||..|||.=|.++ .++.|.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R-~IRTNW 138 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR-TIRTNW 138 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc-eeeccc
Confidence 58999999 99999999999999995 889999999999999999999999999999999999999877 777664
No 307
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.72 E-value=2.5e-06 Score=92.98 Aligned_cols=179 Identities=12% Similarity=0.165 Sum_probs=129.3
Q ss_pred eEEEEeCCceEEEecCCCCCCCcccccCCC----cccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCC-ee
Q 005315 174 QFVIRSGTDTEVLWNDARHLKPEPVYKRSY----WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VK 247 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~----~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~ 247 (702)
+.++...++...+|+. +........+... .+..-+.+|++.-|+++|+--+ +++|.............|.+ +.
T Consensus 101 ~i~l~~~~ns~~i~d~-~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF 179 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDS-KNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIF 179 (967)
T ss_pred eEEEEEcCceEEEEec-ccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceE
Confidence 4566667777778876 2333333332222 1233445788888999998777 99999874555554556665 99
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEe-eccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEE
Q 005315 248 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR-DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 326 (702)
Q Consensus 248 ~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~ 326 (702)
++.||-||+|+++.|.| .++++|++.+++.+. ..-+|...+ | .+.+.| + ++++
T Consensus 180 ~i~~s~dg~~i~s~SdD----------RsiRlW~i~s~~~~~~~~fgHsaRv------------w-~~~~~~-n--~i~t 233 (967)
T KOG0974|consen 180 SIVTSLDGRYIASVSDD----------RSIRLWPIDSREVLGCTGFGHSARV------------W-ACCFLP-N--RIIT 233 (967)
T ss_pred EEEEccCCcEEEEEecC----------cceeeeecccccccCccccccccee------------E-EEEecc-c--eeEE
Confidence 99999999999999999 999999999998776 555666555 7 478888 6 8888
Q ss_pred ec-CCeEEEEecCCcccccceeeccC-CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEe
Q 005315 327 LG-KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 385 (702)
Q Consensus 327 ~~-d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 385 (702)
++ |-+.++|.... ..+.....|.. ++..++..++...+++ ++.|+..++|.+.
T Consensus 234 ~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT-----~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVT-----GGNDSTLKLWDLN 288 (967)
T ss_pred eccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEe-----eccCcchhhhhhh
Confidence 88 99999996553 33334444543 5889999988888887 7778887777654
No 308
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.2e-06 Score=89.71 Aligned_cols=189 Identities=14% Similarity=0.141 Sum_probs=140.4
Q ss_pred CCCCceEEEEeCCceEEEecCCCCCCCccccc---CCCcccceEEE------CC--------------CCcEEEEEeCCc
Q 005315 169 EKARDQFVIRSGTDTEVLWNDARHLKPEPVYK---RSYWTESFVQW------SP--------------LGTYLATVHRQG 225 (702)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~v~~v~~------Sp--------------dg~~lat~~~~~ 225 (702)
|.+-++|+...+++...+|+.. .++....|. +-.++.++..| || |-..||-|...|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~-~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTA-KNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEcc-CceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 3466788889999999999984 333333331 22345555555 22 233566666777
Q ss_pred -eEEeecCcCcceeeeec---CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCccccc
Q 005315 226 -AAVWGGANTFNRLMRYA---HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 300 (702)
Q Consensus 226 -i~iw~~~~~~~~~~~~~---~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~ 300 (702)
|.+|+.. .++...++. |.+ |.++.++.+-..|.+++.+ ..+..|+..+++.++.+......+.
T Consensus 81 ~v~~ys~~-~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad----------~~v~~~~~~~~~~~~~~~~~~~~~~- 148 (541)
T KOG4547|consen 81 SVLLYSVA-GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD----------LKVVYILEKEKVIIRIWKEQKPLVS- 148 (541)
T ss_pred cEEEEEec-CCeEEEEEecCCCCCcceeeecccccCceEecCCc----------eeEEEEecccceeeeeeccCCCccc-
Confidence 8899988 777666663 554 9999999999999999999 9999999999999999988766553
Q ss_pred CCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCC-----CCeEEEEeecCCCC
Q 005315 301 GGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPT-----DPIISLFVPELGGG 375 (702)
Q Consensus 301 ~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~la~~~~~~~~~ 375 (702)
.++.+| ||+.+++++ ++|++|++.+++++..+..|...|.+++|--. |.++... ...
T Consensus 149 ------------sl~is~-D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss----a~~ 210 (541)
T KOG4547|consen 149 ------------SLCISP-DGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS----AAA 210 (541)
T ss_pred ------------eEEEcC-CCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec----ccc
Confidence 789999 999888776 88999999999999999999999999998776 5555541 223
Q ss_pred CCCcEEEEEecCC
Q 005315 376 NQPARVSLVQIPS 388 (702)
Q Consensus 376 ~~~~~i~~~~~~~ 388 (702)
...+.+|..+...
T Consensus 211 ~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 211 ERGITVWVVEKED 223 (541)
T ss_pred ccceeEEEEEccc
Confidence 4445566666533
No 309
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=4.4e-08 Score=88.86 Aligned_cols=74 Identities=27% Similarity=0.339 Sum_probs=68.2
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
+=+|||-||. +.+|.-|.+||..+|- .++.+..|..|.+.|||+||.|.+-++|..|+..|||+.+..+ .|-|.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r-vLQVs 353 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR-VLQVS 353 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce-EEEEE
Confidence 5689999998 9999999999999988 6899999998999999999999999999999999999999877 66554
No 310
>smart00361 RRM_1 RNA recognition motif.
Probab=98.70 E-value=4.8e-08 Score=74.28 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=47.9
Q ss_pred hhhHHHhHh----cccc-ccEE-eecCCCC--CceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 72 KEKFEKLEG----VIKE-DGLW-MPVDPET--QKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 72 ~~~~~~l~~----~~~~-~~~~-~~~d~~~--~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
++++..+|+ .+|. .++. +++|+.+ ++++|||||+|.++++|..|++.|||..++++ .+.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr-~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR-TVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE-EEEe
Confidence 466777777 6776 3453 5666555 99999999999999999999999999999887 5543
No 311
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.70 E-value=2.9e-05 Score=77.84 Aligned_cols=284 Identities=16% Similarity=0.125 Sum_probs=132.1
Q ss_pred ceEEECCCCcEEEEEeC-Cc---eEEeecCcCcceeeeecC--CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005315 207 SFVQWSPLGTYLATVHR-QG---AAVWGGANTFNRLMRYAH--PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 280 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~~-~~---i~iw~~~~~~~~~~~~~~--~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vw 280 (702)
+.-+|.+||+.|++++. ++ +.+.|+. +++..+--.. .......+||+.+.|+..... ..|+-.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~-t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~----------~~l~~v 107 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLA-TGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG----------RSLRRV 107 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETT-T-EEEE---SS-B-TTT-EE-TTSSEEEEEETT----------TEEEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcc-cCEEEECccCCCCCccceEEecCCCeEEEEECC----------CeEEEE
Confidence 34578999988887665 44 5566777 5443332232 234567788999998876555 578899
Q ss_pred EccCCcEEeeccCCCcccccCCCCCCCCcccceEEEc--CCCCcEEEEec----C-------------------CeEEEE
Q 005315 281 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG--GGKDKYFAKLG----K-------------------NMISVY 335 (702)
Q Consensus 281 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s--~~dg~~la~~~----d-------------------~~i~v~ 335 (702)
|+.+++....+..+..-.. ...|+ . |+..++... + ..|...
T Consensus 108 dL~T~e~~~vy~~p~~~~g-------------~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 108 DLDTLEERVVYEVPDDWKG-------------YGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp ETTT--EEEEEE--TTEEE-------------EEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred ECCcCcEEEEEECCccccc-------------ccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 9999886555555544321 23553 4 566665442 1 134444
Q ss_pred ecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc--eeeeeeecccccceeEEccCCCE
Q 005315 336 ETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDY 413 (702)
Q Consensus 336 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~ 413 (702)
++.+++..... -...-+..+.+||....++.++-+.....-..|||.++..... .+.... .......-.|.|+|..
T Consensus 174 dl~tG~~~~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 174 DLKTGERKVVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGST 251 (386)
T ss_dssp ETTT--EEEEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-
T ss_pred ECCCCceeEEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCE
Confidence 55555432110 1112267889999988777776654222334699999976543 232222 1112222369999998
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeE-EEecCCCCceeEEEEeeCCcEEEEEEcCCC-------------CCe
Q 005315 414 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV-LELDNKNDKIIAFAWEPKGHRFAVIHGDSP-------------RPD 479 (702)
Q Consensus 414 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~-------------~~~ 479 (702)
|.+-..... . ....+..++-....... ... .....+.-++||++|+-=++|.+ .+-
T Consensus 252 i~y~~~~~~--~----~~~~i~~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 252 IWYDSYTPG--G----QDFWIAGYDPDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp EEEEEEETT--T------EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred EEEEeecCC--C----CceEEEeeCCCCCCceEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 877433111 0 01233333332222111 122 23445666789988765544422 124
Q ss_pred EEEEEeecccCcCceEEEEE-------cCCC-c--eeEEEEccCCCEEEEEeccCCCceEEEEE
Q 005315 480 ISFYSMRTAQHAGRVSKLTT-------LKGK-Q--ANALFWSPSGRFIVLAGLKGFNGQLEFYN 533 (702)
Q Consensus 480 v~i~d~~~~~~~~~~~~~~~-------~~~~-~--v~~~~~spdg~~l~~~~~~~~dg~v~i~d 533 (702)
|+++++..+... .+.. +.++ . =..+.|||||++++..+. +.|...||-
T Consensus 322 i~~~~~~~~~~~----~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd--~~G~~~vY~ 379 (386)
T PF14583_consen 322 IYLFDVEAGRFR----KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD--MEGPPAVYL 379 (386)
T ss_dssp EEEEETTTTEEE----EEEE-------BTTBSSTT----EE-TTSSEEEEEE---TTSS-EEEE
T ss_pred EEEeccccCcee----eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC--CCCCccEEE
Confidence 556666443321 1111 1111 1 246899999999988775 256555553
No 312
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.69 E-value=7.2e-08 Score=104.19 Aligned_cols=78 Identities=26% Similarity=0.393 Sum_probs=71.5
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
...|||+||| .+++++|.++|+.+|. ..+.|+.|+.+|+++|||||+|.+.++|..|+..|||..+.++ .+.|....
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~-~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGR-PIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCE-EEEEEEcc
Confidence 5789999999 9999999999999988 5788999998999999999999999999999999999999876 88888755
Q ss_pred C
Q 005315 137 D 137 (702)
Q Consensus 137 d 137 (702)
+
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 313
>smart00360 RRM RNA recognition motif.
Probab=98.68 E-value=6.4e-08 Score=74.15 Aligned_cols=68 Identities=34% Similarity=0.517 Sum_probs=60.2
Q ss_pred ECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 64 VDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 64 v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
|.||| .++++++.++|..++. ..+.++.++.+++++|+|||+|.+.++|..|++.+++..++++ .+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~-~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR-PLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc-EEEe
Confidence 57999 9999999999998887 4788888877899999999999999999999999999988765 5544
No 314
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.68 E-value=5.2e-08 Score=106.92 Aligned_cols=76 Identities=24% Similarity=0.345 Sum_probs=69.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|.+||+.+|. ..+.|+.|..+|+++|||||+|.+++.|..|+..|||..++++ .|.|...
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~-~l~v~~a 372 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN-KLHVQRA 372 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe-EEEEEEC
Confidence 4689999999 9999999999999988 4788899988999999999999999999999999999999877 6777654
No 315
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=2.2e-08 Score=95.18 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=73.5
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEeccC
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDD 137 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~d 137 (702)
|.|||+.+. .+.|+.+++-|..+|. .+|-|..|+.||+.||||||||+-++.|+.|.++|||.-+.++ -++|.+.+.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR-NiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR-NIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCc-cccccCCCC
Confidence 789999999 9999999999999998 6899999999999999999999999999999999999999988 788886655
Q ss_pred ccc
Q 005315 138 FDK 140 (702)
Q Consensus 138 ~~~ 140 (702)
+.+
T Consensus 193 mpQ 195 (544)
T KOG0124|consen 193 MPQ 195 (544)
T ss_pred Ccc
Confidence 443
No 316
>smart00362 RRM_2 RNA recognition motif.
Probab=98.63 E-value=1.6e-07 Score=72.14 Aligned_cols=69 Identities=33% Similarity=0.515 Sum_probs=60.3
Q ss_pred EEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
.|+|.||| .++.+++.++|..++. ..+.++.++ +.++|+|||+|.++++|..|+..++|..+.++ .+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~-~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGR-PLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCE-EEee
Confidence 38999999 9999999999998887 467788775 88999999999999999999999999888765 5544
No 317
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.63 E-value=9.6e-05 Score=72.57 Aligned_cols=226 Identities=13% Similarity=0.124 Sum_probs=129.4
Q ss_pred EEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEc-CCCCcEEE
Q 005315 248 LIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG-GGKDKYFA 325 (702)
Q Consensus 248 ~i~fSp-dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s-~~dg~~la 325 (702)
++.|.+ +|.++++-... +.|..|+..++.... +..+. .. .+.+. + ++.+++
T Consensus 4 gp~~d~~~g~l~~~D~~~----------~~i~~~~~~~~~~~~-~~~~~-~~--------------G~~~~~~-~g~l~v 56 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG----------GRIYRVDPDTGEVEV-IDLPG-PN--------------GMAFDRP-DGRLYV 56 (246)
T ss_dssp EEEEETTTTEEEEEETTT----------TEEEEEETTTTEEEE-EESSS-EE--------------EEEEECT-TSEEEE
T ss_pred ceEEECCCCEEEEEEcCC----------CEEEEEECCCCeEEE-EecCC-Cc--------------eEEEEcc-CCEEEE
Confidence 678888 66666665555 889999987765432 33222 22 45666 6 766666
Q ss_pred EecCCeEEEEecCCcccccceee-----ccCCeeEEEeCCCCCeEEEEeecCCCCCCC--cEEEEEecCCcceeeeeeec
Q 005315 326 KLGKNMISVYETESFTLIDKKSL-----KVENVMDFSWSPTDPIISLFVPELGGGNQP--ARVSLVQIPSKEELRQKNLF 398 (702)
Q Consensus 326 ~~~d~~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~ 398 (702)
+.. +.+.++|..+++....... .....+++++.|+|++.++-.... ..... ..+
T Consensus 57 ~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~-~~~~~~~g~v----------------- 117 (246)
T PF08450_consen 57 ADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGG-GASGIDPGSV----------------- 117 (246)
T ss_dssp EET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCB-CTTCGGSEEE-----------------
T ss_pred EEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCC-ccccccccce-----------------
Confidence 554 4556668887754332222 223478899999988555411100 00000 222
Q ss_pred ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCC
Q 005315 399 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 478 (702)
Q Consensus 399 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 478 (702)
|++...+. ...+ . ..-...+.++|+|+++.|+++.... .
T Consensus 118 ------------------------------------~~~~~~~~-~~~~-~-~~~~~pNGi~~s~dg~~lyv~ds~~--~ 156 (246)
T PF08450_consen 118 ------------------------------------YRIDPDGK-VTVV-A-DGLGFPNGIAFSPDGKTLYVADSFN--G 156 (246)
T ss_dssp ------------------------------------EEEETTSE-EEEE-E-EEESSEEEEEEETTSSEEEEEETTT--T
T ss_pred ------------------------------------EEECCCCe-EEEE-e-cCcccccceEECCcchheeeccccc--c
Confidence 22222210 0000 0 0124467899999999887765533 2
Q ss_pred eEEEEEeecccC-cCceEEEEEcCCCc--eeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEE
Q 005315 479 DISFYSMRTAQH-AGRVSKLTTLKGKQ--ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEW 553 (702)
Q Consensus 479 ~v~i~d~~~~~~-~~~~~~~~~~~~~~--v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~ 553 (702)
.|..|++..... ......+..+.... ...+++..+|+..++... .+.|.+++.+ ++++.. .....+++++|
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~---~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG---GGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---TTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---CCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 788888864332 11122344444433 678999999987776554 7899999998 666654 23358899999
Q ss_pred -CCCCCEEEEEE
Q 005315 554 -DPTGRYVATAV 564 (702)
Q Consensus 554 -spdg~~l~t~s 564 (702)
-++.+.|+..+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 57777666554
No 318
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.62 E-value=9e-08 Score=106.02 Aligned_cols=72 Identities=25% Similarity=0.303 Sum_probs=66.7
Q ss_pred EEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.|||+||| .+++++|..+|+.+|. .+|.|..|..|++++|||||+|.++++|++|+..+|+..+.++ .+++.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk-~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGK-PIRIM 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe-eEEee
Confidence 69999999 9999999999999988 5899999998999999999999999999999999999988876 66664
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.61 E-value=3.9e-05 Score=85.32 Aligned_cols=274 Identities=12% Similarity=0.171 Sum_probs=141.3
Q ss_pred cccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005315 204 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 282 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~ 282 (702)
..|.++.|-.++..|+.+...| |.+-|..+....+...-..+|.+++||||++.++..+.. +++.+-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~----------~tll~mT- 137 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR----------QTLLFMT- 137 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC----------cEEEEEe-
Confidence 5788899999999888888888 777788722223333345679999999999999988887 6664433
Q ss_pred cCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcc-cccceeeccCCeeEEEeCCC
Q 005315 283 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFT-LIDKKSLKVENVMDFSWSPT 361 (702)
Q Consensus 283 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~sp~ 361 (702)
.+-.++..-..+..... ... ...+-|-. ....| .|+.|.....+..... .+... -....-..++|--|
T Consensus 138 ~~f~~i~E~~L~~d~~~------~sk--~v~VGwGr-keTqf-rgs~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgD 206 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDER------KSK--FVNVGWGR-KETQF-RGSEGRQAARQKIEKEKALEQI-EQDDHKTSISWRGD 206 (1265)
T ss_pred ccccchhcccccccccc------ccc--cceecccc-cceee-ecchhhhcccccccccccccch-hhccCCceEEEccC
Confidence 44444332222111100 000 00233332 22111 1111111111111000 00000 01112356999999
Q ss_pred CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee-cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecC
Q 005315 362 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 440 (702)
Q Consensus 362 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 440 (702)
|.++|+..-+. ..+.-+|.+|+.. +. +...+. .....-.+.|-|.|..+++...+.... .+.+|.-+.-
T Consensus 207 g~~fAVs~~~~--~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~------~IvffErNGL 276 (1265)
T KOG1920|consen 207 GEYFAVSFVES--ETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS------DIVFFERNGL 276 (1265)
T ss_pred CcEEEEEEEec--cCCceeEEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCC------cEEEEecCCc
Confidence 99999855433 3333445555543 11 111100 111223468999999998876654321 2444443321
Q ss_pred CcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccC
Q 005315 441 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 513 (702)
Q Consensus 441 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spd 513 (702)
....-.+..+.....+..++|+.++..||+.........|++|-+..-. .-.+....++.. .-+.|+|-
T Consensus 277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh--WYLKq~l~~~~~--~~~~W~p~ 345 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH--WYLKQELQFSQK--ALLMWDPV 345 (1265)
T ss_pred cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE--EEEEEEEecccc--ccccccCC
Confidence 1111111122223348999999999999996665444469999983221 111222233322 22788884
No 320
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.60 E-value=5.6e-06 Score=79.17 Aligned_cols=330 Identities=12% Similarity=0.124 Sum_probs=200.9
Q ss_pred cccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecC---CCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005315 196 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAH---PQVKLIDFSPGEKYLVTYSSHEPSNPRD 271 (702)
Q Consensus 196 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~---~~v~~i~fSpdg~~l~t~s~d~~~~~~~ 271 (702)
...++||...++....-|-..-+.+.+.|. ++||--...++.-..+.| ..++++.+++.-..|+.|-..
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n------- 89 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN------- 89 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec-------
Confidence 345788888888888888877888999888 889944325554444433 359999999999999999888
Q ss_pred CCccEEEEEEcc----CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccce
Q 005315 272 ANRVVINIFDVR----TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK 346 (702)
Q Consensus 272 ~~~~~i~vwd~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~ 346 (702)
|++.-+.+. ....++.+..|...+. .+-|+- ....+++.+ |..+.---.+.+..+...
T Consensus 90 ---gtvtefs~sedfnkm~~~r~~~~h~~~v~-------------~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y 152 (404)
T KOG1409|consen 90 ---GTVTEFALSEDFNKMTFLKDYLAHQARVS-------------AIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGY 152 (404)
T ss_pred ---ceEEEEEhhhhhhhcchhhhhhhhhccee-------------eEEecC-CceeEEEeccccceEEEeeccCCcccce
Confidence 888777653 3345566666655542 456666 667777777 666654444555444433
Q ss_pred eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccc
Q 005315 347 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 426 (702)
Q Consensus 347 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 426 (702)
..... .-+..+.+.+ ..-|-..+.+.+..+.......+.....+......+.|.+....|.++..+..
T Consensus 153 ~~~~~-------~t~~~~d~~~-~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~---- 220 (404)
T KOG1409|consen 153 NFETP-------ASALQFDALY-AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS---- 220 (404)
T ss_pred Eeecc-------CCCCceeeEE-EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc----
Confidence 22111 1111111110 00011223333333344444556666666667777899999999999988877
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCc-C------ceEEEE-
Q 005315 427 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA-G------RVSKLT- 498 (702)
Q Consensus 427 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~-~------~~~~~~- 498 (702)
+.+|++... +....++.+|...|..+...+--+.+.++..|+ .|.+|+++..... . .|..-.
T Consensus 221 -----vi~wdigg~--~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg---~i~~w~mn~~r~etpewl~s~~cQ~c~q 290 (404)
T KOG1409|consen 221 -----VIMWDIGGR--KGTAYELQGHNDKVQALSYAQHTRQLISCGEDG---GIVVWNMNVKRVETPEWLDSDSCQKCNQ 290 (404)
T ss_pred -----eEEEeccCC--cceeeeeccchhhhhhhhhhhhheeeeeccCCC---eEEEEeccceeecCccccccchhhhhCc
Confidence 678887653 334466778999999998888888999999999 8999998643110 0 000000
Q ss_pred ---------------EcCCC-------ceeEEEEccCCCEEEEEeccCCCceEEEEECC-------Ccceeeecc--cCc
Q 005315 499 ---------------TLKGK-------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD-------ELETMATAE--HFM 547 (702)
Q Consensus 499 ---------------~~~~~-------~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~-------~~~~~~~~~--~~~ 547 (702)
-+..| .+...+ +.+.....+-+. .-.+++.|.- +...++..| +..
T Consensus 291 pffwn~~~m~~~k~~glr~h~crkcg~avc~~c-~s~~~~~p~mg~---e~~vR~~~~c~~~i~~~~~t~LA~phei~tg 366 (404)
T KOG1409|consen 291 PFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKC-SSNRSSYPTMGF---EFSVRVCDSCYPTIKDEERTPLAIPHEIKTG 366 (404)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccc-ccCccccccccc---eeEEEEecccchhhhcCCCCccccccccccc
Confidence 00000 011111 111111122222 2344444432 112244433 367
Q ss_pred eeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 548 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 548 i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
|+.+.+.-+-..|+|++. |..++|||+.
T Consensus 367 ItamhlqetlglLvTsG~-----~Rvi~iwd~~ 394 (404)
T KOG1409|consen 367 ITAMHLQETLGLLVTSGT-----DRVIKIWDVR 394 (404)
T ss_pred eeEEEhhhhccceeecCC-----ceEEEEEech
Confidence 899999998889999999 8999999975
No 321
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=8.1e-08 Score=82.61 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=62.3
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
..++.|||+||| .+-+.+++.||-.++. ..|.+-.- -..-.||||+|+++-+|..||..-||+.+|+. .|+|..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~-rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC-RLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcc-eEEEEe
Confidence 468899999999 9999999999998887 34544332 24567999999999999999999999999977 788764
No 322
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.59 E-value=5e-05 Score=74.76 Aligned_cols=287 Identities=13% Similarity=0.142 Sum_probs=151.8
Q ss_pred ceEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCc-ccccCCC
Q 005315 225 GAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGT 303 (702)
Q Consensus 225 ~i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~-~~~~~~~ 303 (702)
.+.|.|.+ +++.+..+...-...+..||||+.+.+++.--.....+...-.|.+||..|-.....+..+.. ... .
T Consensus 18 rv~viD~d-~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~---~ 93 (342)
T PF06433_consen 18 RVYVIDAD-SGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ---V 93 (342)
T ss_dssp EEEEEETT-TTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-----B
T ss_pred eEEEEECC-CCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe---e
Confidence 37788988 788777776666667889999999887653211111112224799999998887775544432 110 0
Q ss_pred CCCCCcccceEEEcCCCCcEEEEec---CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcE
Q 005315 304 GGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 380 (702)
Q Consensus 304 ~~~~~~~w~~~~~s~~dg~~la~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 380 (702)
....+ .+++|. ||+++.... ...|.|.|+...+.+. .+..+++..+--++...+.+. ++|+...
T Consensus 94 ---~~~~~-~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~--ei~~PGC~~iyP~~~~~F~~l------C~DGsl~ 160 (342)
T PF06433_consen 94 ---VPYKN-MFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVG--EIDTPGCWLIYPSGNRGFSML------CGDGSLL 160 (342)
T ss_dssp ---S--GG-GEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEE--EEEGTSEEEEEEEETTEEEEE------ETTSCEE
T ss_pred ---ccccc-ceEEcc-CCcEEEEEccCCCCeEEEEECCCCceee--eecCCCEEEEEecCCCceEEE------ecCCceE
Confidence 00112 579999 999988776 6889999999887763 345555544433333333332 2555544
Q ss_pred EEEEecCCcceeeeeeecccccc----eeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcce-eEEEecC----
Q 005315 381 VSLVQIPSKEELRQKNLFSVSDC----KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDN---- 451 (702)
Q Consensus 381 i~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~---- 451 (702)
-..++..-....+...+|....- .-.+...+..+++.+-.+ .+.-.++....... ....+..
T Consensus 161 ~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G---------~v~~~dlsg~~~~~~~~~~~~t~~e~ 231 (342)
T PF06433_consen 161 TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG---------NVYSADLSGDSAKFGKPWSLLTDAEK 231 (342)
T ss_dssp EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS---------EEEEEEETTSSEEEEEEEESS-HHHH
T ss_pred EEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC---------EEEEEeccCCcccccCcccccCcccc
Confidence 44444322222222223322211 112333444444333332 23333443332111 1111100
Q ss_pred ----CCCceeEEEEeeCCcEEEEEEcCC-------CCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEE
Q 005315 452 ----KNDKIIAFAWEPKGHRFAVIHGDS-------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVL 519 (702)
Q Consensus 452 ----h~~~v~~~~~sp~g~~l~~~~~d~-------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~ 519 (702)
..+.-.-+++++..++|++....+ +...|.+||+.+++ .+..++ .+++.+|..|.+.+=++.
T Consensus 232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k------rv~Ri~l~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK------RVARIPLEHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE------EEEEEEEEEEESEEEEESSSS-EEE
T ss_pred ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe------EEEEEeCCCccceEEEccCCCcEEE
Confidence 012223367776555555443211 22357777776554 666666 457889999998874444
Q ss_pred EeccCCCceEEEEECCCcceeeecc
Q 005315 520 AGLKGFNGQLEFYNVDELETMATAE 544 (702)
Q Consensus 520 ~~~~~~dg~v~i~d~~~~~~~~~~~ 544 (702)
+.... ++.|.+||..+++.+.+..
T Consensus 306 ~~~~~-~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 306 ALSAG-DGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEETT-TTEEEEEETTT--EEEEE-
T ss_pred EEcCC-CCeEEEEeCcCCcEEeehh
Confidence 32222 7899999999999887643
No 323
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.58 E-value=0.00018 Score=72.23 Aligned_cols=313 Identities=12% Similarity=0.091 Sum_probs=140.3
Q ss_pred ecCcCcceeeeecCCCee-------EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCC
Q 005315 230 GGANTFNRLMRYAHPQVK-------LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGG 302 (702)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~-------~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~ 302 (702)
|.. ++.++.++....+. .-+|.+||++|+.++.- .+...+.+.|+.+++..+...+.....
T Consensus 16 D~~-TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~~~---- 83 (386)
T PF14583_consen 16 DPD-TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGDNT---- 83 (386)
T ss_dssp -TT-T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-T----
T ss_pred CCC-CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCCCc----
Confidence 555 77777777544432 34788999888887763 123679999999988766555443221
Q ss_pred CCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEe--CCCCCeEEEEeecCC------
Q 005315 303 TGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSW--SPTDPIISLFVPELG------ 373 (702)
Q Consensus 303 ~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~--sp~~~~la~~~~~~~------ 373 (702)
. ...+++ +++.++... ...|.-.|+.+++..........-+....| +.++..++.......
T Consensus 84 --------~-g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~ 153 (386)
T PF14583_consen 84 --------F-GGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLT 153 (386)
T ss_dssp --------T-T-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----
T ss_pred --------c-ceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCcc
Confidence 0 246788 888877664 678888888876543222222222333444 345555543322110
Q ss_pred ---------CCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005315 374 ---------GGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 444 (702)
Q Consensus 374 ---------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 444 (702)
...-..+|..+++.+++.-.... -....-.+.++|....+++-+..+. +.. ..-+||-++..+...
T Consensus 154 ~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGp---w~~-Vd~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 154 KWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGP---WDL-VDQRIWTINTDGSNV 228 (386)
T ss_dssp SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S----TTT-SS-SEEEEETTS---
T ss_pred ccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCC---cce-eceEEEEEEcCCCcc
Confidence 00112356666665544211110 0011123345665544444333221 000 013688888766544
Q ss_pred eEEEecCCCCceeEEEEeeCCcEEEEEEc-CCC-CCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEec
Q 005315 445 EVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSP-RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 445 ~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 522 (702)
..+.-......+..=-|.|||..|...+. .+. ...|.-+++.++.. ..+...+ ....+.-|+||++++--+.
T Consensus 229 ~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~----~~~~~~p--~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 229 KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER----RRLMEMP--WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E----EEEEEE---SEEEEEE-TTSSEEEEEE-
T ss_pred eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc----eEEEeCC--ceeeeEEcCCCCEEEecCC
Confidence 33322112334555679999998887654 221 11344555554432 2333332 4667888999998875443
Q ss_pred cC-------------CCceEEEEECCCcceeeeccc----------C--ceeeeEECCCCCEEEEEEeecccccccEEEE
Q 005315 523 KG-------------FNGQLEFYNVDELETMATAEH----------F--MATDVEWDPTGRYVATAVTSVHEMENGFNIW 577 (702)
Q Consensus 523 ~~-------------~dg~v~i~d~~~~~~~~~~~~----------~--~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw 577 (702)
+. .+--|+++++..+.......+ . .-..+.|||||++|+..|.. .|...||
T Consensus 303 d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~----~G~~~vY 378 (386)
T PF14583_consen 303 DAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM----EGPPAVY 378 (386)
T ss_dssp ------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T----TSS-EEE
T ss_pred CCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC----CCCccEE
Confidence 11 012566788876544321111 1 12368999999999999873 6666666
Q ss_pred Ee
Q 005315 578 SF 579 (702)
Q Consensus 578 ~~ 579 (702)
-+
T Consensus 379 ~v 380 (386)
T PF14583_consen 379 LV 380 (386)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 324
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.58 E-value=2e-06 Score=80.81 Aligned_cols=275 Identities=16% Similarity=0.268 Sum_probs=155.4
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-----EEeeccCCCccccc----CCCCCCCCcccceEE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-----VMRDFKGSADEFAV----GGTGGVAGVSWPVFR 315 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~-----~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~ 315 (702)
.|+++.|-..|.||++|... |.|.+|.-.... ....|++|....-. .-...+. .+.
T Consensus 28 ~ItaVefd~tg~YlatGDkg----------GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin-----~I~ 92 (460)
T COG5170 28 KITAVEFDETGLYLATGDKG----------GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKIN-----AIE 92 (460)
T ss_pred eeeEEEeccccceEeecCCC----------ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhh-----hee
Confidence 48999999999999999988 899999743322 23345555433210 0011222 355
Q ss_pred EcCCCC---cEEEEecCCeEEEEecCCccc--ccceee----cc--C-Cee------EEEeCCCCCeEEEEeecCCCCCC
Q 005315 316 WGGGKD---KYFAKLGKNMISVYETESFTL--IDKKSL----KV--E-NVM------DFSWSPTDPIISLFVPELGGGNQ 377 (702)
Q Consensus 316 ~s~~dg---~~la~~~d~~i~v~d~~~~~~--~~~~~~----~~--~-~v~------~~~~sp~~~~la~~~~~~~~~~~ 377 (702)
|-. ++ .+|+++.+.+|++|.+....+ +..-.+ |. + ++. --..|....+++. .|.
T Consensus 93 w~~-~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa-~p~------ 164 (460)
T COG5170 93 WFD-DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA-KPC------ 164 (460)
T ss_pred eec-CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe-ccc------
Confidence 654 43 377777799999999874422 111100 00 0 000 0111222222322 111
Q ss_pred CcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC----
Q 005315 378 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN---- 453 (702)
Q Consensus 378 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~---- 453 (702)
+|+ . +.+....-.+.++.+...++++.+- .+.+|.+...+.....+.+.+|.
T Consensus 165 --rvy----------a--NaH~yhiNSiS~NsD~et~lSaDdL----------rINLWnl~i~D~sFnIVDiKP~nmeeL 220 (460)
T COG5170 165 --RVY----------A--NAHPYHINSISFNSDKETLLSADDL----------RINLWNLEIIDGSFNIVDIKPHNMEEL 220 (460)
T ss_pred --eec----------c--ccceeEeeeeeecCchheeeeccce----------eeeeccccccCCceEEEeccCccHHHH
Confidence 110 0 1111111223456666665543322 25788877666666666665554
Q ss_pred -CceeEEEEeeC-CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc--C----------CCceeEEEEccCCCEEEE
Q 005315 454 -DKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--K----------GKQANALFWSPSGRFIVL 519 (702)
Q Consensus 454 -~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~----------~~~v~~~~~spdg~~l~~ 519 (702)
..|++..|+|. ...|...+..| .|++-|++....-..-+.+... . ...|..+.|||+|+++++
T Consensus 221 teVItSaeFhp~~cn~fmYSsSkG---~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls 297 (460)
T COG5170 221 TEVITSAEFHPEMCNVFMYSSSKG---EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS 297 (460)
T ss_pred HHHHhhcccCHhHcceEEEecCCC---cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence 45888899994 56666777777 8999999743210000011111 0 124678999999999998
Q ss_pred EeccCCCceEEEEECCCc-ceeee--------------cccCce---eeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 520 AGLKGFNGQLEFYNVDEL-ETMAT--------------AEHFMA---TDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 520 ~~~~~~dg~v~i~d~~~~-~~~~~--------------~~~~~i---~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
-.. -+|+|||++.. ..+.+ .+...| ..+.||-|.+.+++|+. .+.+-||-
T Consensus 298 Rdy----ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy-----~NNfgiyp 365 (460)
T COG5170 298 RDY----LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY-----SNNFGIYP 365 (460)
T ss_pred ecc----ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc-----ccceeeec
Confidence 874 78999999732 22222 122223 25889999999999998 56776665
No 325
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.57 E-value=1.5e-07 Score=104.33 Aligned_cols=77 Identities=27% Similarity=0.330 Sum_probs=69.8
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-+++|||+||| .+++++|+++|+.+|. .++.++.| .+|+++|||||+|.+.++|.+|+..|||..++++ .+.|...
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk-~l~V~~a 361 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGK-PLYVALA 361 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc-eeEEEec
Confidence 46789999999 9999999999999998 58889999 4899999999999999999999999999999877 7877754
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 362 ~ 362 (562)
T TIGR01628 362 Q 362 (562)
T ss_pred c
Confidence 4
No 326
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.56 E-value=1.5e-07 Score=101.67 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=66.9
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
-...|||+||| .++++++..+|+.+|+ ..+.|+.|..+|+++|||||+|.+.++|.+|+. |||..+.++ .+.|.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~-~i~v~ 163 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGR-PIIVQ 163 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCe-eeEEe
Confidence 46789999999 9999999999999988 589999999899999999999999999999995 999999876 66554
No 327
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.55 E-value=1.7e-07 Score=82.81 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=65.4
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc--ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE--DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~--~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
..++||+.+| -+-+.++...|..++. ..+.|..++.||+|||||||+|++++.|+-|.+.||+|-|.+. .|.+.-+
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~-lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH-LLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh-eeeeEEe
Confidence 4589999999 8999999999887643 3677888989999999999999999999999999999998755 6665544
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 128 p 128 (214)
T KOG4208|consen 128 P 128 (214)
T ss_pred C
Confidence 3
No 328
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.55 E-value=8.9e-05 Score=69.94 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=48.7
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 248 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 248 ~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
.++.++||+.||..... .|.|=..++. ..+.....+.+... .|.-++||| |+.+||
T Consensus 2 ~~~~~~~Gk~lAi~qd~-----------~iEiRsa~Ddf~si~~kcqVpkD~~P----------QWRkl~WSp-D~tlLa 59 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ-----------CIEIRSAKDDFSSIIGKCQVPKDPNP----------QWRKLAWSP-DCTLLA 59 (282)
T ss_pred ceeecCCCcEEEEEecc-----------EEEEEeccCCchheeEEEecCCCCCc----------hheEEEECC-CCcEEE
Confidence 36788999999877654 5555443322 23333333433321 288999999 999999
Q ss_pred Eec-CCeEEEEecCCc
Q 005315 326 KLG-KNMISVYETESF 340 (702)
Q Consensus 326 ~~~-d~~i~v~d~~~~ 340 (702)
.+. .|+|++||+...
T Consensus 60 ~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 60 YAESTGTIRVFDLMGS 75 (282)
T ss_pred EEcCCCeEEEEecccc
Confidence 998 999999998753
No 329
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.55 E-value=1.9e-07 Score=94.65 Aligned_cols=77 Identities=31% Similarity=0.432 Sum_probs=71.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .++++.+..+|..++. ..+.|+.|+.+|+++|||||+|.++++|..|+..++|..|.++ .+.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~-~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGR-PLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCc-eeEeeccc
Confidence 6899999999 9999999999999988 5899999988999999999999999999999999999999988 77777644
No 330
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.54 E-value=4.7e-07 Score=69.92 Aligned_cols=71 Identities=30% Similarity=0.456 Sum_probs=61.6
Q ss_pred EEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.|+|.||| .++++++..+|+.++. ..+.++.++ .++++|+|||+|.+.++|..|++.+++..++++ .+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~-~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGR-PLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCe-EEEEe
Confidence 37899999 8999999999998877 578888887 448899999999999999999999999988766 55543
No 331
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.53 E-value=6.9e-05 Score=78.89 Aligned_cols=289 Identities=12% Similarity=0.071 Sum_probs=149.9
Q ss_pred CcEEEEEeCCc-eEEeecCcCcceeeeecCCC-e-eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeec
Q 005315 215 GTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-V-KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 291 (702)
Q Consensus 215 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v-~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~ 291 (702)
|..+++++.++ +..+|.. +++.+-++.... + ..+. .++..++.++.+ +.+..+|..+|+.+...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~-tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~----------g~l~ald~~tG~~~W~~ 131 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAE-TGKRLWRVDLDERLSGGVG--ADGGLVFVGTEK----------GEVIALDAEDGKELWRA 131 (377)
T ss_pred CCEEEEECCCCeEEEEEcc-CCcEeeeecCCCCcccceE--EcCCEEEEEcCC----------CEEEEEECCCCcEeeee
Confidence 55677777766 7788887 677666554332 1 2222 256777788888 89999999999988766
Q ss_pred cCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEE-eCC--CCCeEEEE
Q 005315 292 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFS-WSP--TDPIISLF 368 (702)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~-~sp--~~~~la~~ 368 (702)
........ .| .. . ++..++...++.|..||..+++.+.........+.... -+| .+..+++
T Consensus 132 ~~~~~~~~-----------~p--~v-~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~- 195 (377)
T TIGR03300 132 KLSSEVLS-----------PP--LV-A-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV- 195 (377)
T ss_pred ccCceeec-----------CC--EE-E-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-
Confidence 54322110 11 11 2 45555544599999999999887765433222110000 011 1223333
Q ss_pred eecCCCCCCCcEEEEEecCCcceeeeeeeccc-----------ccceeEEccCCCEEEEEEcccccccccccccEEEEEE
Q 005315 369 VPELGGGNQPARVSLVQIPSKEELRQKNLFSV-----------SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 437 (702)
Q Consensus 369 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 437 (702)
+.. ...+..++..+++.+-....... ....... .+..+++...++. +..++.
T Consensus 196 ----~~~--~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~---------l~a~d~ 258 (377)
T TIGR03300 196 ----GFA--GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGR---------VAALDL 258 (377)
T ss_pred ----ECC--CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCE---------EEEEEC
Confidence 222 23566666655543322111000 0000111 2345555444332 333333
Q ss_pred ecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc---CCCceeEEEEccCC
Q 005315 438 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL---KGKQANALFWSPSG 514 (702)
Q Consensus 438 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~spdg 514 (702)
... ...-.... . ....+. ..+.++++++.++ .|..+|..++. .+-.. ......+... .|
T Consensus 259 ~tG-~~~W~~~~---~-~~~~p~--~~~~~vyv~~~~G---~l~~~d~~tG~------~~W~~~~~~~~~~ssp~i--~g 320 (377)
T TIGR03300 259 RSG-RVLWKRDA---S-SYQGPA--VDDNRLYVTDADG---VVVALDRRSGS------ELWKNDELKYRQLTAPAV--VG 320 (377)
T ss_pred CCC-cEEEeecc---C-CccCce--EeCCEEEEECCCC---eEEEEECCCCc------EEEccccccCCccccCEE--EC
Confidence 221 11111111 1 111111 2466777777777 89999986654 22222 2222222222 46
Q ss_pred CEEEEEeccCCCceEEEEECCCcceeeecc--cCce-eeeEECCCCCEEEEEEeecccccccEEEE
Q 005315 515 RFIVLAGLKGFNGQLEFYNVDELETMATAE--HFMA-TDVEWDPTGRYVATAVTSVHEMENGFNIW 577 (702)
Q Consensus 515 ~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~--~~~i-~~~~~spdg~~l~t~s~~~~~~d~~v~iw 577 (702)
..|++++. +|.|+++|..+++.+.+.. ...+ ....+. + ..|+.++. ||.++.|
T Consensus 321 ~~l~~~~~---~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~-----dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDF---EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTR-----DGDLYAF 376 (377)
T ss_pred CEEEEEeC---CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeC-----CceEEEe
Confidence 68888877 9999999999998886533 2222 222322 2 34777777 7777654
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.51 E-value=3.3e-05 Score=82.11 Aligned_cols=245 Identities=8% Similarity=0.072 Sum_probs=132.4
Q ss_pred cCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 317 GGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 317 s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
+| ||+.+...+ .+.+.+.|..++++...... ......+.++|+|+++.+.+.. ......+..++......+..
T Consensus 201 pn-DGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyN---sE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 201 PN-DGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYN---SEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred CC-CCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccC---cccCcceeeeccccCceEEE
Confidence 45 665553333 56777778777666544322 1235678899999988773210 01111222222222211111
Q ss_pred eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEec----CCcceeEEEecCCCCceeEEEEeeCCcEEEE
Q 005315 395 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE----RDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 470 (702)
Q Consensus 395 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 470 (702)
.+..... .+.++|++..+. .+. +.+.+... .......+.. ....+.+.+||||+++++
T Consensus 276 fni~~ie----a~vkdGK~~~V~--gn~---------V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyV 337 (635)
T PRK02888 276 FNIARIE----EAVKAGKFKTIG--GSK---------VPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIA 337 (635)
T ss_pred EchHHHH----HhhhCCCEEEEC--CCE---------EEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEE
Confidence 1111000 235677766652 111 34555443 1112223334 667788999999999999
Q ss_pred EEcCCCCCeEEEEEeecccC------cCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCC-------
Q 005315 471 IHGDSPRPDISFYSMRTAQH------AGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE------- 536 (702)
Q Consensus 471 ~~~d~~~~~v~i~d~~~~~~------~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~------- 536 (702)
++.-. ++|.++|+.+... ..+-..+.+.. +..-...+|.++|....+... |..|..|++..
T Consensus 338 anklS--~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~---dsqv~kwn~~~a~~~~~g 412 (635)
T PRK02888 338 NGKLS--PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL---DSQIVKWNIEAAIRAYKG 412 (635)
T ss_pred eCCCC--CcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEee---cceeEEEehHHHHHHhcc
Confidence 88744 3899999976431 11111233332 223456789999986666666 89999999985
Q ss_pred ---cceeeec-ccCceeee------EECCCCCEEEEEEee---ccc-----ccccEEEEEeccceeeeecc
Q 005315 537 ---LETMATA-EHFMATDV------EWDPTGRYVATAVTS---VHE-----MENGFNIWSFNGKLLYRTLK 589 (702)
Q Consensus 537 ---~~~~~~~-~~~~i~~~------~~spdg~~l~t~s~~---~~~-----~d~~v~iw~~~g~~l~~~~~ 589 (702)
..++... -+..+-.+ .-.|||+||++...- |.- -...-++.|+.|..+.-.+.
T Consensus 413 ~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d 483 (635)
T PRK02888 413 EKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHD 483 (635)
T ss_pred ccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEec
Confidence 2233321 11222222 337899999988652 100 12244677888876655543
No 333
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=2.1e-07 Score=87.84 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=69.5
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.+-|+|.|+| ..-+-+|+.+|..+|+ .+|.|..++ .-||||+||+|+++++|.+|-..|||....++ .+-||..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGR-kIEVn~A 171 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGR-KIEVNNA 171 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeece-EEEEecc
Confidence 45789999999 9999999999999999 589999875 78999999999999999999999999999988 8888875
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 172 T 172 (376)
T KOG0125|consen 172 T 172 (376)
T ss_pred c
Confidence 4
No 334
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.50 E-value=0.00022 Score=70.04 Aligned_cols=227 Identities=12% Similarity=0.105 Sum_probs=126.9
Q ss_pred eEEECC-CCcEEEEEeCCc-eEEeecCcCcceeeeecCCCeeEEEec-CCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005315 208 FVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFS-PGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 284 (702)
Q Consensus 208 ~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~fS-pdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~ 284 (702)
+++|.+ +|.++++-...+ |..|+.. +... ..+..+....+.+. ++|.++++.... +.++|..+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~-~~~~-~~~~~~~~~G~~~~~~~g~l~v~~~~~------------~~~~d~~~ 69 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPD-TGEV-EVIDLPGPNGMAFDRPDGRLYVADSGG------------IAVVDPDT 69 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT-TTEE-EEEESSSEEEEEEECTTSEEEEEETTC------------EEEEETTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECC-CCeE-EEEecCCCceEEEEccCCEEEEEEcCc------------eEEEecCC
Confidence 578998 666666655555 7788888 4333 22444447788888 777766665443 56679888
Q ss_pred CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C--------CeEEEEecCCcccccceeeccCCeeE
Q 005315 285 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K--------NMISVYETESFTLIDKKSLKVENVMD 355 (702)
Q Consensus 285 g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d--------~~i~v~d~~~~~~~~~~~~~~~~v~~ 355 (702)
++....+....... .......+++.+ +|++.++.. . +.|..++.. ++. ..........+.
T Consensus 70 g~~~~~~~~~~~~~--------~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNG 138 (246)
T PF08450_consen 70 GKVTVLADLPDGGV--------PFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNG 138 (246)
T ss_dssp TEEEEEEEEETTCS--------CTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEE
T ss_pred CcEEEEeeccCCCc--------ccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccc
Confidence 86543333210000 000022688999 998766654 2 446666655 332 122223445678
Q ss_pred EEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcce-eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEE
Q 005315 356 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE-LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 434 (702)
Q Consensus 356 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 434 (702)
++|+|+++.|.+. .....+|+.++...... +... ++
T Consensus 139 i~~s~dg~~lyv~------ds~~~~i~~~~~~~~~~~~~~~-------------------------------------~~ 175 (246)
T PF08450_consen 139 IAFSPDGKTLYVA------DSFNGRIWRFDLDADGGELSNR-------------------------------------RV 175 (246)
T ss_dssp EEEETTSSEEEEE------ETTTTEEEEEEEETTTCCEEEE-------------------------------------EE
T ss_pred eEECCcchheeec------ccccceeEEEeccccccceeee-------------------------------------ee
Confidence 9999999877642 33344566665432110 1100 11
Q ss_pred EEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEE-ccC
Q 005315 435 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW-SPS 513 (702)
Q Consensus 435 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-spd 513 (702)
+ ..+....+..-.+++..+|+..++....+ .|.+++.+ +. ......++...+++++| -|+
T Consensus 176 ~-----------~~~~~~~g~pDG~~vD~~G~l~va~~~~~---~I~~~~p~-G~----~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 176 F-----------IDFPGGPGYPDGLAVDSDGNLWVADWGGG---RIVVFDPD-GK----LLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp E-----------EE-SSSSCEEEEEEEBTTS-EEEEEETTT---EEEEEETT-SC----EEEEEE-SSSSEEEEEEESTT
T ss_pred E-----------EEcCCCCcCCCcceEcCCCCEEEEEcCCC---EEEEECCC-cc----EEEEEcCCCCCEEEEEEECCC
Confidence 1 11111123466788999998777766666 88888875 22 22333444457889999 477
Q ss_pred CCEEEEEe
Q 005315 514 GRFIVLAG 521 (702)
Q Consensus 514 g~~l~~~~ 521 (702)
.+.|++.+
T Consensus 237 ~~~L~vTt 244 (246)
T PF08450_consen 237 GKTLYVTT 244 (246)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 77777655
No 335
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.48 E-value=7.7e-07 Score=101.56 Aligned_cols=212 Identities=15% Similarity=0.216 Sum_probs=148.9
Q ss_pred CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEc
Q 005315 329 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 408 (702)
Q Consensus 329 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 408 (702)
++...-|........- ..+.++|..+.-+|...+.++ |+.++.+++|.|..+..- +......+....++.|+
T Consensus 2189 ~~~~~tq~~~~~~~~~--k~~v~~v~r~~sHp~~~~Ylt-----gs~dgsv~~~~w~~~~~v-~~~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGASVMI--KHPVENVRRMTSHPSDPYYLT-----GSQDGSVRMFEWGHGQQV-VCFRTAGNSRVTRSRFN 2260 (2439)
T ss_pred CccccceecccceeEe--ecccCceeeecCCCCCceEEe-----cCCCceEEEEeccCCCeE-EEeeccCcchhhhhhhc
Confidence 4444444444333221 235677899999999988888 889999998888654432 22223333555566789
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 409 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
.+|..+.+...++. +.+|.+. |.....-..|+...+++.|-. ..+++.+......++.+||.--.
T Consensus 2261 ~qGnk~~i~d~dg~---------l~l~q~~----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGD---------LSLWQAS----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred ccCCceeeeccCCc---------eeecccC----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC
Confidence 99998888877776 7788776 223345557888888888865 55666554332348999997432
Q ss_pred cCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecc
Q 005315 489 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVH 568 (702)
Q Consensus 489 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~ 568 (702)
. ....+.+.+.+.++++++.|..+.|++|+. +|.|++||+...+++.+... |. .-.++++++.
T Consensus 2326 ~---~~s~v~~~H~~gaT~l~~~P~~qllisggr---~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss--- 2388 (2439)
T KOG1064|consen 2326 P---MNSLVHTCHDGGATVLAYAPKHQLLISGGR---KGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSS--- 2388 (2439)
T ss_pred c---ccceeeeecCCCceEEEEcCcceEEEecCC---cCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCc---
Confidence 2 123566777778999999999999999998 99999999997666654332 44 5568999998
Q ss_pred cccccEEEEEeccc
Q 005315 569 EMENGFNIWSFNGK 582 (702)
Q Consensus 569 ~~d~~v~iw~~~g~ 582 (702)
.|.++||++++-
T Consensus 2389 --~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2389 --EGNIKIWRLSEF 2400 (2439)
T ss_pred --ccceEEEEcccc
Confidence 899999999854
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=6.3e-05 Score=83.78 Aligned_cols=250 Identities=15% Similarity=0.262 Sum_probs=134.3
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 324 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~l 324 (702)
.|.++.|..++..|+.+... |.|.+-|..++...-.=....+.. +.+||| |++.+
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~----------G~iilvd~et~~~eivg~vd~GI~--------------aaswS~-Dee~l 124 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITAL----------GDIILVDPETLELEIVGNVDNGIS--------------AASWSP-DEELL 124 (1265)
T ss_pred ceEEEEEecccceEEEEecC----------CcEEEEcccccceeeeeeccCceE--------------EEeecC-CCcEE
Confidence 48999999999888888888 888888876665322111111211 789999 99999
Q ss_pred EEecCCeEEEEecCCcccccceeeccC-----CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc-ceeeeeeec
Q 005315 325 AKLGKNMISVYETESFTLIDKKSLKVE-----NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK-EELRQKNLF 398 (702)
Q Consensus 325 a~~~d~~i~v~d~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 398 (702)
+..+.+...++...+..++..+.++.. ....+-|-.....+- |+.+ +....+.... +.+... -.
T Consensus 125 ~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfr------gs~g---r~~~~~~~~~ek~~~~~-~~ 194 (1265)
T KOG1920|consen 125 ALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFR------GSEG---RQAARQKIEKEKALEQI-EQ 194 (1265)
T ss_pred EEEeCCcEEEEEeccccchhccccccccccccccceecccccceeee------cchh---hhcccccccccccccch-hh
Confidence 999854444555555555544333211 122233322211111 0000 0000000000 000000 01
Q ss_pred ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCC
Q 005315 399 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 478 (702)
Q Consensus 399 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 478 (702)
......+.|--||+++++..-..... .-.+++|+-... .. .... ...+--.+++|-|.|..+++....+...
T Consensus 195 ~~~~~~IsWRgDg~~fAVs~~~~~~~----~RkirV~drEg~-Ln--s~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 195 DDHKTSISWRGDGEYFAVSFVESETG----TRKIRVYDREGA-LN--STSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred ccCCceEEEccCCcEEEEEEEeccCC----ceeEEEecccch-hh--cccC-cccccccceeecCCCCeEeeeeecCCCC
Confidence 12234578999999999854321100 012567764410 00 0000 1134456799999999999987765555
Q ss_pred eEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcc
Q 005315 479 DISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE 538 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~ 538 (702)
.|.||..+.-.. +.+..-.......+..++|+.++..|++.........|++|-+.+..
T Consensus 267 ~IvffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 267 DIVFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cEEEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 799998643211 11111111122348999999999999984332214559999988643
No 337
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.48 E-value=1.5e-07 Score=95.32 Aligned_cols=74 Identities=23% Similarity=0.412 Sum_probs=68.5
Q ss_pred EEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 62 IVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 62 ~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
+||+||- .++++++...|+.+++ ..|.+++|.+||.+|||+||+|.+.+.|++|..+|||+.+-++ .++|..-.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr-~ikV~~v~ 356 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGR-LIKVSVVT 356 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCc-eEEEEEee
Confidence 8999999 9999999999999999 5899999988999999999999999999999999999999888 67776543
No 338
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.46 E-value=6.9e-07 Score=70.99 Aligned_cols=73 Identities=23% Similarity=0.398 Sum_probs=61.9
Q ss_pred cEEEECCCC-CCChhhHHHhHhcc--cc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVI--KE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~--~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
++|-+.|+| ..+.+.|.++.... ++ ..++||+|-.++.+.|||||.|.+++.|....+.++|.+......-++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 678999999 89999999888843 33 578999999899999999999999999999999999999874433333
No 339
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.43 E-value=0.00011 Score=86.18 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=89.1
Q ss_pred cccCCCCCceEEEEeCCceEEEecCCCCCCCcccccC--------------CCcccceEEECCCCcEEEEEeCCc--eEE
Q 005315 165 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKR--------------SYWTESFVQWSPLGTYLATVHRQG--AAV 228 (702)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--------------~~~~v~~v~~Spdg~~lat~~~~~--i~i 228 (702)
...++.+...|+.-.+++.+..++.. +.....+.+ +-..-..++++++|..|+++...+ |++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC--CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 44555555567766666666666652 322222211 112346899999988766665433 778
Q ss_pred eecCcCcceeeeec-------------------CCCeeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEE
Q 005315 229 WGGANTFNRLMRYA-------------------HPQVKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 288 (702)
Q Consensus 229 w~~~~~~~~~~~~~-------------------~~~v~~i~fSpd-g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~ 288 (702)
++.. +.. +.++. ......++|+|+ +..+++.+.+ +.|++||..++..
T Consensus 651 id~~-~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~----------~~I~v~d~~~g~v- 717 (1057)
T PLN02919 651 IDFV-NET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ----------HQIWEYNISDGVT- 717 (1057)
T ss_pred EecC-CCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC----------CeEEEEECCCCeE-
Confidence 8876 332 22110 112457999994 5555666666 7899999877654
Q ss_pred eeccCCCccccc-CCCCCCCCcccc-eEEEcCCCCcEEEEec--CCeEEEEecCCcc
Q 005315 289 RDFKGSADEFAV-GGTGGVAGVSWP-VFRWGGGKDKYFAKLG--KNMISVYETESFT 341 (702)
Q Consensus 289 ~~~~~~~~~~~~-~~~~~~~~~~w~-~~~~s~~dg~~la~~~--d~~i~v~d~~~~~ 341 (702)
..+.+....... +.......+..| .++++| ++++|..+. ++.|++||+.++.
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCc
Confidence 333222110000 000000111111 578999 988554444 8999999988654
No 340
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.42 E-value=6.2e-06 Score=77.65 Aligned_cols=257 Identities=12% Similarity=0.179 Sum_probs=148.4
Q ss_pred eEEEcCCCCcEEEEec-CCeEEEEecCCcc-c----ccceeec------------cCCeeEEEeCCCCC--eEEEEeecC
Q 005315 313 VFRWGGGKDKYFAKLG-KNMISVYETESFT-L----IDKKSLK------------VENVMDFSWSPTDP--IISLFVPEL 372 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~-d~~i~v~d~~~~~-~----~~~~~~~------------~~~v~~~~~sp~~~--~la~~~~~~ 372 (702)
.+.|.. .|.|+++|. .|.|.+|.-.... + ....+.| .+.|..+.|..++. .+..
T Consensus 31 aVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl----- 104 (460)
T COG5170 31 AVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL----- 104 (460)
T ss_pred EEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE-----
Confidence 678888 999999999 8999998755322 1 1111111 12477888877643 2333
Q ss_pred CCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcce----eEEE
Q 005315 373 GGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI----EVLE 448 (702)
Q Consensus 373 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~----~~~~ 448 (702)
.+.+.++++|.+.-...+.+...++...- + +|-|.-+.+. ..+.+=++......+ ..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~----~-~~~~g~~~s~------------~~l~lprls~hd~iiaa~p~rvy 167 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSF----H-SPMGGPLTST------------KELLLPRLSEHDEIIAAKPCRVY 167 (460)
T ss_pred ecCCceeeeeeeecccchhhhcccccccc----c-cccCCCcCCH------------HHhhcccccccceEEEeccceec
Confidence 44788888887766555555444332111 1 1211111000 001111111111100 1112
Q ss_pred ecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC-------ceeEEEEccCCCE-EEEE
Q 005315 449 LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-------QANALFWSPSGRF-IVLA 520 (702)
Q Consensus 449 l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------~v~~~~~spdg~~-l~~~ 520 (702)
-..|...+.+++++.|...++++ .+- .|.+|++....+... +-.+..+ -|++..|+|.... +...
T Consensus 168 aNaH~yhiNSiS~NsD~et~lSa-DdL---rINLWnl~i~D~sFn---IVDiKP~nmeeLteVItSaeFhp~~cn~fmYS 240 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLSA-DDL---RINLWNLEIIDGSFN---IVDIKPHNMEELTEVITSAEFHPEMCNVFMYS 240 (460)
T ss_pred cccceeEeeeeeecCchheeeec-cce---eeeeccccccCCceE---EEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence 23678889999999888777654 334 688999875544322 2222222 3788899996543 3333
Q ss_pred eccCCCceEEEEECCCcce-------ee-----------ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec--
Q 005315 521 GLKGFNGQLEFYNVDELET-------MA-----------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-- 580 (702)
Q Consensus 521 ~~~~~dg~v~i~d~~~~~~-------~~-----------~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-- 580 (702)
+. .|.|++-|++...+ .. +.-...|+++.|+++||||++-+. .+++|||..
T Consensus 241 sS---kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy------ltvkiwDvnm~ 311 (460)
T COG5170 241 SS---KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY------LTVKIWDVNMA 311 (460)
T ss_pred cC---CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc------ceEEEEecccc
Confidence 33 79999999873211 10 011246789999999999999888 899999986
Q ss_pred cceeeeec--------------cccE---eeEEEeeCCCCCCChh
Q 005315 581 GKLLYRTL--------------KDHF---FQFLWRPRPPSFLTPE 608 (702)
Q Consensus 581 g~~l~~~~--------------~~~i---~~~~w~p~~~~l~s~~ 608 (702)
...+.+.+ .+.| ..+.|+-+.+.+++++
T Consensus 312 k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 312 KNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred cCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence 33443331 1222 3467888877777765
No 341
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.39 E-value=3.1e-06 Score=88.52 Aligned_cols=287 Identities=13% Similarity=0.192 Sum_probs=164.5
Q ss_pred cccCCCCCceEEEEeCCceEEEecCCCCCCCccccc-CCCcccceEEECCCC---cEEEEEeCCceEEeecCcCcceeee
Q 005315 165 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYK-RSYWTESFVQWSPLG---TYLATVHRQGAAVWGGANTFNRLMR 240 (702)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~v~~v~~Spdg---~~lat~~~~~i~iw~~~~~~~~~~~ 240 (702)
....|.||++.+... -+.. +-+....+.|.+.+. -..|.|-.++|||.. ..+++.+....++|++.........
T Consensus 30 ~si~p~grdi~lAsr-~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIe 107 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASR-QGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIE 107 (1081)
T ss_pred eeeccccchhhhhhh-cCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceE
Confidence 344567887754332 2333 223323455544442 235889999999864 4677777777889987633322222
Q ss_pred e---cCC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCc-EEeeccCCCcccccCCCCCCCCcccceE
Q 005315 241 Y---AHP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGK-VMRDFKGSADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 241 ~---~~~-~v~~i~fSpdg-~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 314 (702)
| +|. +|+.+.|.|.. ..|++++.+ ..+..||+++-. .+..+..-.... +.+
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvd----------t~vh~wd~rSp~~p~ys~~~w~s~a-------------sqV 164 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVD----------TYVHAWDMRSPHRPFYSTSSWRSAA-------------SQV 164 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeecccc----------ccceeeeccCCCcceeeeecccccC-------------cee
Confidence 2 233 59999999976 578899999 889999987653 344333221111 157
Q ss_pred EEcCCCCcEEEEecCCeEEEEecCCcc-cccceeeccCCeeEEEeCCCC-CeEEEEeecCCCCCCCcEEEEEecCCccee
Q 005315 315 RWGGGKDKYFAKLGKNMISVYETESFT-LIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEEL 392 (702)
Q Consensus 315 ~~s~~dg~~la~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (702)
+|+..++..+|+...+.|.+||+..+. .+.....+...|..++|..-- ..+.. ++.+++++.|.|+-.+...-
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s-----~~~d~tvkfw~y~kSt~e~~ 239 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMS-----SSNDGTVKFWDYSKSTTESK 239 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcc-----cCCCCceeeecccccccccc
Confidence 888756778887779999999998765 333344466667777765431 22333 55788888888876554321
Q ss_pred eeeeecccccceeEEccCCCEEEEEEccccccc--ccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCc----
Q 005315 393 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK--KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH---- 466 (702)
Q Consensus 393 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~---- 466 (702)
+..+ .+.....-.+-|-|.-.++.-..+.... .........|.... .+.....+.+|.+.|..+.|-..+.
T Consensus 240 ~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~--~~~pVh~F~GH~D~V~eFlWR~r~e~~~d 316 (1081)
T KOG0309|consen 240 RTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFD--LNTPVHTFVGHDDVVLEFLWRKRKECDGD 316 (1081)
T ss_pred eecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcccc--CCcceeeecCcchHHHHHhhhhcccccCC
Confidence 1111 0001111122333332222111111000 00000011122222 2233456779999999998865433
Q ss_pred ------EEEEEEcCCCCCeEEEEEeec
Q 005315 467 ------RFAVIHGDSPRPDISFYSMRT 487 (702)
Q Consensus 467 ------~l~~~~~d~~~~~v~i~d~~~ 487 (702)
.|++-+.|. ++++|.+.+
T Consensus 317 ~d~rdfQLVTWSkD~---~lrlWpI~~ 340 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQ---TLRLWPIDS 340 (1081)
T ss_pred CCccceeEEEeecCC---ceEeeeccH
Confidence 688888898 999999864
No 342
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.38 E-value=2.8e-06 Score=97.14 Aligned_cols=211 Identities=13% Similarity=0.234 Sum_probs=139.3
Q ss_pred EeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCC
Q 005315 228 VWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVA 307 (702)
Q Consensus 228 iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~ 307 (702)
-|... ......+-+.++|.++.=+|...|.+||+.| |.|++|....+..+..+....... ++
T Consensus 2194 tq~~~-~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~d----------gsv~~~~w~~~~~v~~~rt~g~s~-------vt 2255 (2439)
T KOG1064|consen 2194 TQTSR-GASVMIKHPVENVRRMTSHPSDPYYLTGSQD----------GSVRMFEWGHGQQVVCFRTAGNSR-------VT 2255 (2439)
T ss_pred ceecc-cceeEeecccCceeeecCCCCCceEEecCCC----------ceEEEEeccCCCeEEEeeccCcch-------hh
Confidence 46665 4444455456679999999999999999999 999999988888777665432211 11
Q ss_pred CcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEec
Q 005315 308 GVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 386 (702)
Q Consensus 308 ~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 386 (702)
.+.|+. .|+-+..+. ||.+.+|.+..+ .......|..+..++.|-. ..++. ++.
T Consensus 2256 -----r~~f~~-qGnk~~i~d~dg~l~l~q~~pk-~~~s~qchnk~~~Df~Fi~--s~~~t-----ag~----------- 2310 (2439)
T KOG1064|consen 2256 -----RSRFNH-QGNKFGIVDGDGDLSLWQASPK-PYTSWQCHNKALSDFRFIG--SLLAT-----AGR----------- 2310 (2439)
T ss_pred -----hhhhcc-cCCceeeeccCCceeecccCCc-ceeccccCCccccceeeee--hhhhc-----ccc-----------
Confidence 568888 777666666 999999998732 2222234555566666543 33333 110
Q ss_pred CCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCc
Q 005315 387 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH 466 (702)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~ 466 (702)
++++.. +.+|+.-...... ..-++|.+.++++++.|..+
T Consensus 2311 ---------------------s~d~~n------------------~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2311 ---------------------SSDNRN------------------VCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred ---------------------CCCCCc------------------ccchhcccCcccc--eeeeecCCCceEEEEcCcce
Confidence 222211 2233322111110 11147899999999999999
Q ss_pred EEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee
Q 005315 467 RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 542 (702)
Q Consensus 467 ~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~ 542 (702)
.|++|+.+| .|++||++..+ ..++++. +. ...++++++. .|.++||++....++.+
T Consensus 2350 llisggr~G---~v~l~D~rqrq------l~h~~~~-------~~-~~~~f~~~ss---~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2350 LLISGGRKG---EVCLFDIRQRQ------LRHTFQA-------LD-TREYFVTGSS---EGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred EEEecCCcC---cEEEeehHHHH------HHHHhhh-------hh-hhheeeccCc---ccceEEEEccccchhhc
Confidence 999999999 99999997654 3333322 33 4567888887 99999999998777665
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.38 E-value=0.00018 Score=76.64 Aligned_cols=95 Identities=17% Similarity=0.297 Sum_probs=65.1
Q ss_pred eEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce------------eeecc-
Q 005315 479 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET------------MATAE- 544 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~------------~~~~~- 544 (702)
.|.+.|..+.... ....+..++ +.....+.+||||+++++++. .+++|.++|+.+.+. .....
T Consensus 297 ~V~VID~~t~~~~-~~~v~~yIPVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 297 KVPVVDGRKAANA-GSALTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred EEEEEECCccccC-CcceEEEEECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 6788887651000 012444444 456788999999999998875 378999999987553 22222
Q ss_pred cCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 545 HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 545 ~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
.......+|+++|....|... |..+-.|++..
T Consensus 374 GlGPLHTaFDg~G~aytslf~-----dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFL-----DSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEee-----cceeEEEehHH
Confidence 233457899999986666666 89999999864
No 344
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.38 E-value=7.6e-05 Score=69.18 Aligned_cols=222 Identities=9% Similarity=0.067 Sum_probs=133.0
Q ss_pred CCcEEEEec-CCeEEEEecCCcccccce-eeccCCee---EEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 320 KDKYFAKLG-KNMISVYETESFTLIDKK-SLKVENVM---DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 320 dg~~la~~~-d~~i~v~d~~~~~~~~~~-~~~~~~v~---~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
...+||.++ .|...+|...+....-.. ..+..+|. ..+-+. .-+.. ++.+.++++..++..+.+....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~--~~~~i-----~sndht~k~~~~~~~s~~~~~h 155 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK--FPLNI-----ASNDHTGKTMVVSGDSNKFAVH 155 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc--cceee-----ccCCcceeEEEEecCcccceee
Confidence 456888887 899999998865433211 11222221 111111 11222 5588888888888766542221
Q ss_pred eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcC
Q 005315 395 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 474 (702)
Q Consensus 395 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 474 (702)
.. +.....++.+++++++++..+... +-+|.++..+.....+.+....+.-.+.+|+.....||++..|
T Consensus 156 ~~--~~~~ns~~~snd~~~~~~Vgds~~---------Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 156 NQ--NLTQNSLHYSNDPSWGSSVGDSRR---------VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQD 224 (344)
T ss_pred cc--ccceeeeEEcCCCceEEEecCCCc---------ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecC
Confidence 11 122344578999999988776544 5677777665554444444445666778999999999999999
Q ss_pred CCCCeEEEEEeecccCcCceE-EEEEcCCCceeEEEEccCCC--EEEEEeccCCCceEEEEECCCcceeee---c-----
Q 005315 475 SPRPDISFYSMRTAQHAGRVS-KLTTLKGKQANALFWSPSGR--FIVLAGLKGFNGQLEFYNVDELETMAT---A----- 543 (702)
Q Consensus 475 ~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~spdg~--~l~~~~~~~~dg~v~i~d~~~~~~~~~---~----- 543 (702)
| .+.|||++......... ..+.-+.+.+..+.|||.|. +|+..-. -+.+.+.|++++.-... .
T Consensus 225 g---~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh---fs~~hv~D~R~~~~~q~I~i~~d~~~ 298 (344)
T KOG4532|consen 225 G---TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH---FSRVHVVDTRNYVNHQVIVIPDDVER 298 (344)
T ss_pred C---cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC---cceEEEEEcccCceeeEEecCccccc
Confidence 9 99999998654311000 00111234688999999774 3444433 68899999987543221 1
Q ss_pred -cc-CceeeeEECCCCCEEEEEEe
Q 005315 544 -EH-FMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 544 -~~-~~i~~~~~spdg~~l~t~s~ 565 (702)
|. ..+....|+.++..+.+.+.
T Consensus 299 ~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 299 KHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccccccccccccCCCcccccccc
Confidence 11 23555666666665555444
No 345
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=3.2e-07 Score=83.74 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=67.6
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
-+|+|||-+|| ...+.++-++|..+|. .+..+-+|+.|..||.|+||.|.++..|+.||..|||+.+.-+ +|+|
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK-RLKV 359 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK-RLKV 359 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhh-hhhh
Confidence 47999999999 9999999999999988 6888889999999999999999999999999999999999755 5554
No 346
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.36 E-value=4e-06 Score=87.69 Aligned_cols=285 Identities=12% Similarity=0.197 Sum_probs=165.1
Q ss_pred cccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCC---CeeEEEecCCC---CEEEEEcCCCCCCCcCCCccEE
Q 005315 204 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP---QVKLIDFSPGE---KYLVTYSSHEPSNPRDANRVVI 277 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~---~v~~i~fSpdg---~~l~t~s~d~~~~~~~~~~~~i 277 (702)
..+..+..+|.|+-+|.++..|+.+-|+...+.+-.-++|- .|..+.|||.- ..+++.+.. .-
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q-----------ka 93 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ-----------KA 93 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-----------hh
Confidence 35678899999999999999998888887666665555554 38899999864 356666655 34
Q ss_pred EEEEccCC---cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccc-ccceeeccCC
Q 005315 278 NIFDVRTG---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL-IDKKSLKVEN 352 (702)
Q Consensus 278 ~vwd~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~-~~~~~~~~~~ 352 (702)
.||++... ..--.+.+|...++ .+.|.|+.-..+|+++ |-.+..||+.+-.. +........+
T Consensus 94 iiwnlA~ss~~aIef~lhghsrait-------------d~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAIT-------------DINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred hhhhhhcCCccceEEEEecCcccee-------------ccccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc
Confidence 59987432 22223445544432 4677775667899999 99999999874321 1111111122
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccE
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 432 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 432 (702)
...+.|+-....+.. .+.+.. +
T Consensus 161 asqVkwnyk~p~vla-----sshg~~-----------------------------------------------------i 182 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLA-----SSHGND-----------------------------------------------------I 182 (1081)
T ss_pred CceeeecccCcchhh-----hccCCc-----------------------------------------------------e
Confidence 333444432221111 111111 4
Q ss_pred EEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEE
Q 005315 433 ELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFW 510 (702)
Q Consensus 433 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~ 510 (702)
.+|+++..+.|. ..+.+|...|+.+.|.. .-..+.+.+.|+ +|++|+....... .-+++. .-++..-.+
T Consensus 183 ~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~---tvkfw~y~kSt~e----~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 183 FVWDLRKGSTPL--CSLKGHVSSVNSIDFNRFKYSEIMSSSNDG---TVKFWDYSKSTTE----SKRTVTTNFPIWRGRY 253 (1081)
T ss_pred EEEeccCCCcce--EEecccceeeehHHHhhhhhhhhcccCCCC---ceeeecccccccc----cceeccccCcceeccc
Confidence 555555554443 23334566666666654 234566677788 9999998643322 222222 235666667
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCCc----------cee--eecccCceeeeEECCC--------CC--EEEEEEeecc
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDEL----------ETM--ATAEHFMATDVEWDPT--------GR--YVATAVTSVH 568 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~~----------~~~--~~~~~~~i~~~~~spd--------g~--~l~t~s~~~~ 568 (702)
-|-|.-.++--... +..+.+++.++. +.+ ..+|...|..+.|... .+ .|+|.+.
T Consensus 254 ~Pfg~g~~~mp~~G-~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk--- 329 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVG-GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK--- 329 (1081)
T ss_pred cccCceeEeccccC-CeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec---
Confidence 77665433322110 234444544321 112 2356666666666543 22 6899999
Q ss_pred cccccEEEEEeccceee
Q 005315 569 EMENGFNIWSFNGKLLY 585 (702)
Q Consensus 569 ~~d~~v~iw~~~g~~l~ 585 (702)
|..+++|-+....+.
T Consensus 330 --D~~lrlWpI~~~i~~ 344 (1081)
T KOG0309|consen 330 --DQTLRLWPIDSQIQR 344 (1081)
T ss_pred --CCceEeeeccHHHHH
Confidence 999999998765443
No 347
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.35 E-value=1.2e-06 Score=85.93 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=68.7
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCc-cCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK-LDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~-~~~~h~~~v~~~ 135 (702)
.-.+||+-+| .++|.+++.||+.++. ..|-++.|+-||.++|+|||.|.+.++|.+|+..|++.+ |-+-|...--++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 4578999999 9999999999998887 479999999999999999999999999999999998865 445443333345
Q ss_pred cCcccc
Q 005315 136 DDFDKF 141 (702)
Q Consensus 136 ~d~~~~ 141 (702)
.|.|+-
T Consensus 114 Ad~E~e 119 (510)
T KOG0144|consen 114 ADGERE 119 (510)
T ss_pred cchhhh
Confidence 665553
No 348
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.33 E-value=0.00013 Score=68.64 Aligned_cols=217 Identities=13% Similarity=0.165 Sum_probs=125.4
Q ss_pred CCeEEEEecCCccc------ccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc--ceeeeeeeccc
Q 005315 329 KNMISVYETESFTL------IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKNLFSV 400 (702)
Q Consensus 329 d~~i~v~d~~~~~~------~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~ 400 (702)
.|.|.+|....... +..+.+...-..++.|++.+..+++ .+..+.+........ +.+.....+..
T Consensus 94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~v-------s~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFV-------SDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEE-------EcCCCcEEEEecceeeeeecccccccce
Confidence 78999987653211 1111111112457789998888877 344444443322221 11112222222
Q ss_pred ccceeEEcc-CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCCCCC
Q 005315 401 SDCKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRP 478 (702)
Q Consensus 401 ~~~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~ 478 (702)
......|+. +.+.+.++++++. +..|+++..+.-+.. ...-|...|.++.-+| .+.++++|+.|.
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~---------l~~~D~R~p~~~i~~-n~kvH~~GV~SI~ss~~~~~~I~TGsYDe--- 233 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGS---------LSCWDIRIPKTFIWH-NSKVHTSGVVSIYSSPPKPTYIATGSYDE--- 233 (339)
T ss_pred eeeeeecccCCCceEEecCCCce---------EEEEEecCCcceeee-cceeeecceEEEecCCCCCceEEEecccc---
Confidence 222223332 2256777777766 788888843321111 1224678888888877 688999999998
Q ss_pred eEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCC--EEEEEeccCCCceEEEEECCCc--c-----eeeecccCce
Q 005315 479 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR--FIVLAGLKGFNGQLEFYNVDEL--E-----TMATAEHFMA 548 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~--~l~~~~~~~~dg~v~i~d~~~~--~-----~~~~~~~~~i 548 (702)
.|++||.+.... ++..-. ++.|..+.++|.-. .|+++- -+-.+|.+.+.. + ...+.|++.+
T Consensus 234 ~i~~~DtRnm~k-----Pl~~~~v~GGVWRi~~~p~~~~~lL~~CM----h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~ 304 (339)
T KOG0280|consen 234 CIRVLDTRNMGK-----PLFKAKVGGGVWRIKHHPEIFHRLLAACM----HNGAKILDSSDKVLEFQIVLPSDKIHDSLC 304 (339)
T ss_pred ceeeeehhcccC-----ccccCccccceEEEEecchhhhHHHHHHH----hcCceEEEecccccchheeeecccccccee
Confidence 999999985443 333322 46789999999543 333333 344566665522 1 1234667777
Q ss_pred eeeEECCCCCEEEEEEeecccccccEE-EEE
Q 005315 549 TDVEWDPTGRYVATAVTSVHEMENGFN-IWS 578 (702)
Q Consensus 549 ~~~~~spdg~~l~t~s~~~~~~d~~v~-iw~ 578 (702)
..-.|.....+|||++.. |+.++ +|-
T Consensus 305 YG~DWd~~~~~lATCsFY----Dk~~~~~Wl 331 (339)
T KOG0280|consen 305 YGGDWDSKDSFLATCSFY----DKKIRQLWL 331 (339)
T ss_pred eccccccccceeeeeecc----ccceeeeee
Confidence 788887766789998875 67744 674
No 349
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=2.6e-06 Score=85.99 Aligned_cols=81 Identities=23% Similarity=0.305 Sum_probs=69.5
Q ss_pred ccCCCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHh-----CC-CccC
Q 005315 54 VESGFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT-----NG-YKLD 125 (702)
Q Consensus 54 ~~~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~-----~~-~~~~ 125 (702)
-+.+++.+|||.||| .++++.+...|+++|+ ..+.+.+|+.||.++|-|||.|.++..|.+||... .| +.++
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 355688999999999 9999999999999999 47788899999999999999999999999999987 33 5566
Q ss_pred CeeEEEEEec
Q 005315 126 RAHIFAVNMF 135 (702)
Q Consensus 126 ~~h~~~v~~~ 135 (702)
++ .|+|+..
T Consensus 367 GR-~Lkv~~A 375 (678)
T KOG0127|consen 367 GR-LLKVTLA 375 (678)
T ss_pred cc-EEeeeec
Confidence 66 6776653
No 350
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.31 E-value=0.00044 Score=73.85 Aligned_cols=258 Identities=12% Similarity=0.074 Sum_probs=136.1
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeec-cCCCcccccCCCCCCCCcccceEEEcCCCCcEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF-KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 324 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~l 324 (702)
+..+.+||||++||.+-... +.....|+|+|+.+|+.+... ...... .+.|++ |++.|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~-----G~e~~~l~v~Dl~tg~~l~d~i~~~~~~---------------~~~W~~-d~~~~ 184 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDG-----GSEWYTLRVFDLETGKFLPDGIENPKFS---------------SVSWSD-DGKGF 184 (414)
T ss_dssp EEEEEETTTSSEEEEEEEET-----TSSEEEEEEEETTTTEEEEEEEEEEESE---------------EEEECT-TSSEE
T ss_pred eeeeeECCCCCEEEEEecCC-----CCceEEEEEEECCCCcCcCCcccccccc---------------eEEEeC-CCCEE
Confidence 44678999999998664331 112267999999999776532 211110 389999 98877
Q ss_pred EEec-CC-----------eEEEEecCCcccccceeecc--C-C-eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC
Q 005315 325 AKLG-KN-----------MISVYETESFTLIDKKSLKV--E-N-VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 388 (702)
Q Consensus 325 a~~~-d~-----------~i~v~d~~~~~~~~~~~~~~--~-~-v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 388 (702)
.... +. .|..|.+.+...-....... . . ...+..++++++|++..... .+ ...+++++...
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~--~~-~s~v~~~d~~~ 261 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG--TS-ESEVYLLDLDD 261 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS--SS-EEEEEEEECCC
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc--cc-CCeEEEEeccc
Confidence 6654 22 26666666543322222211 1 2 56788999999988754322 22 47888888876
Q ss_pred c----ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcc--eeEEEecCCCCceeEEEEe
Q 005315 389 K----EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP--IEVLELDNKNDKIIAFAWE 462 (702)
Q Consensus 389 ~----~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~h~~~v~~~~~s 462 (702)
. ........ ............|..+.+.++.+. .+..|+.+...... .....+..|...+.--.++
T Consensus 262 ~~~~~~~~~~l~~-~~~~~~~~v~~~~~~~yi~Tn~~a-------~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~ 333 (414)
T PF02897_consen 262 GGSPDAKPKLLSP-REDGVEYYVDHHGDRLYILTNDDA-------PNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS 333 (414)
T ss_dssp TTTSS-SEEEEEE-SSSS-EEEEEEETTEEEEEE-TT--------TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred cCCCcCCcEEEeC-CCCceEEEEEccCCEEEEeeCCCC-------CCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence 4 11111111 111111112223555555554332 12456655543322 1122333455544444555
Q ss_pred eCCcEEEEEEcCCCCCeEEEEEee-cccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEecc-CCCceEEEEECCCcce
Q 005315 463 PKGHRFAVIHGDSPRPDISFYSMR-TAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLK-GFNGQLEFYNVDELET 539 (702)
Q Consensus 463 p~g~~l~~~~~d~~~~~v~i~d~~-~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~-~~dg~v~i~d~~~~~~ 539 (702)
..+++|++....+....|+++++. +.. .....+. .+.+..+...+++..+.+...+ ..-++++-||+.+++.
T Consensus 334 ~~~~~Lvl~~~~~~~~~l~v~~~~~~~~-----~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 334 LFKDYLVLSYRENGSSRLRVYDLDDGKE-----SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EETTEEEEEEEETTEEEEEEEETT-TEE-----EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EECCEEEEEEEECCccEEEEEECCCCcE-----EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 667788877776655689999986 221 1122222 3345566666666655443321 2367888899987765
Q ss_pred e
Q 005315 540 M 540 (702)
Q Consensus 540 ~ 540 (702)
.
T Consensus 409 ~ 409 (414)
T PF02897_consen 409 T 409 (414)
T ss_dssp E
T ss_pred E
Confidence 4
No 351
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.30 E-value=1.7e-06 Score=93.26 Aligned_cols=71 Identities=24% Similarity=0.234 Sum_probs=63.4
Q ss_pred CCcEEEECCCC-C-CChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-V-VPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~-~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+++|||.||| . ++++.|..||+.+|. ..+.++.+ .+|||||+|.++++|..|+..|||..++++ .+.|..
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~-~l~v~~ 347 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGK-PLRVCP 347 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCc-eEEEEE
Confidence 56899999999 4 999999999999998 57888876 269999999999999999999999999887 788764
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.8e-05 Score=84.24 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=81.1
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEE
Q 005315 247 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 326 (702)
Q Consensus 247 ~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~ 326 (702)
+-++|+|...++++++-.+... |.|.||- .+|++.+....+-... +++|+| ..-.|+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~------GSVtIfa-dtGEPqr~Vt~P~hat--------------SLCWHp-e~~vLa~ 76 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERG------GSVTIFA-DTGEPQRDVTYPVHAT--------------SLCWHP-EEFVLAQ 76 (1416)
T ss_pred cccccCCCCceeEEEEecCCCC------ceEEEEe-cCCCCCcccccceehh--------------hhccCh-HHHHHhh
Confidence 4468999999999887663322 7888886 6888766655443332 689999 7777777
Q ss_pred ec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecC
Q 005315 327 LG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP 387 (702)
Q Consensus 327 ~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~ 387 (702)
+- -|.+.+|...+.+.......|...+..+.|||+|..+.+ .+..+.+.+|...
T Consensus 77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t-------~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMT-------LDNPGSVHLWRYD 131 (1416)
T ss_pred ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEE-------cCCCceeEEEEee
Confidence 76 899999998866544434456778999999999999998 5555555555544
No 353
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=2.2e-06 Score=78.84 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=58.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.|.|||+|++ .++++.++++|+.+|. ..|++- +.+|||||.|++.+.|..||..+||..+.+. ..+.+
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvF------k~qGYaFVrF~tkEaAahAIv~mNntei~G~-~VkCs 233 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVF------KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQ-LVRCS 233 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEe------cccceEEEEecchhhHHHHHHHhcCceeCce-EEEEe
Confidence 5789999999 6999999999999987 466665 4579999999999999999999999999865 44443
No 354
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.27 E-value=0.00026 Score=65.78 Aligned_cols=222 Identities=11% Similarity=0.021 Sum_probs=131.9
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcE-EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeE
Q 005315 254 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV-MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMI 332 (702)
Q Consensus 254 dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i 332 (702)
..-+||.|+.. |...+|...+.+. +.....+...+.+ +.. + |. + .-..+.+..|.++
T Consensus 83 kc~~la~gG~~----------g~fd~~~~~tn~~h~~~cd~snn~v~~-----~~r--~-cd--~--~~~~~i~sndht~ 140 (344)
T KOG4532|consen 83 KCVTLADGGAS----------GQFDLFACNTNDGHLYQCDVSNNDVTL-----VKR--Y-CD--L--KFPLNIASNDHTG 140 (344)
T ss_pred cccEEEecccc----------ceeeeecccCcccceeeecccccchhh-----hhh--h-cc--c--ccceeeccCCcce
Confidence 34588888888 8999999875543 3333333222210 000 0 11 1 1123344447888
Q ss_pred EEEecCCcccccceeeccCC--eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee-eeeccccc--ceeEE
Q 005315 333 SVYETESFTLIDKKSLKVEN--VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ-KNLFSVSD--CKMYW 407 (702)
Q Consensus 333 ~v~d~~~~~~~~~~~~~~~~--v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~--~~~~~ 407 (702)
++.++..+.. ++..|.+. +.+++++|+++++++ -+..-+|..|.++....... .......+ ....|
T Consensus 141 k~~~~~~~s~--~~~~h~~~~~~ns~~~snd~~~~~~-------Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 141 KTMVVSGDSN--KFAVHNQNLTQNSLHYSNDPSWGSS-------VGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred eEEEEecCcc--cceeeccccceeeeEEcCCCceEEE-------ecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 8887764322 22345554 788999999999998 33445677777765432222 22222222 33478
Q ss_pred ccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEE--EecCCCCceeEEEEeeCCc--EEEEEEcCCCCCeEEEE
Q 005315 408 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVL--ELDNKNDKIIAFAWEPKGH--RFAVIHGDSPRPDISFY 483 (702)
Q Consensus 408 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~l~~h~~~v~~~~~sp~g~--~l~~~~~d~~~~~v~i~ 483 (702)
+.....+|++..+++ +.+|+++....|.... +-+.|++.+..+.|+|.|. .|...-.-+ .+.+.
T Consensus 212 s~~~~~FAv~~Qdg~---------~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs---~~hv~ 279 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGT---------CAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS---RVHVV 279 (344)
T ss_pred ccCcceEEEEecCCc---------EEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcc---eEEEE
Confidence 999999999999988 8999999877665433 2456899999999998664 333333334 78899
Q ss_pred EeecccCcCceEEEEEcCC-------CceeEEEEccCCCEEEEEe
Q 005315 484 SMRTAQHAGRVSKLTTLKG-------KQANALFWSPSGRFIVLAG 521 (702)
Q Consensus 484 d~~~~~~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~ 521 (702)
|+++.... ..+...+. ..+..-.|+.++..+.+.+
T Consensus 280 D~R~~~~~---q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 280 DTRNYVNH---QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EcccCcee---eEEecCccccccccccccccccccCCCccccccc
Confidence 98765432 22221111 1245555666665555544
No 355
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.26 E-value=0.0016 Score=64.31 Aligned_cols=269 Identities=9% Similarity=0.123 Sum_probs=153.6
Q ss_pred cEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-----------CCeEEEEecCCcccc
Q 005315 275 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-----------KNMISVYETESFTLI 343 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-----------d~~i~v~d~~~~~~~ 343 (702)
+.+.|+|..+++.+-.+...... .+..|| |++.+++.+ ...|.+||..+....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~---------------~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~ 80 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG---------------NVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT 80 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE---------------EEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred ceEEEEECCCCcEEEEeecccCC---------------ceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence 57889999888887776554332 467899 999877543 246999999987654
Q ss_pred cceeecc-------CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEE
Q 005315 344 DKKSLKV-------ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 416 (702)
Q Consensus 344 ~~~~~~~-------~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 416 (702)
....+.. .....+++|++|+++.++- ..-...|.+.|+..++.+.... ...|.+.+-...+.+..
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-----~TPa~SVtVVDl~~~kvv~ei~---~PGC~~iyP~~~~~F~~ 152 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN-----FTPATSVTVVDLAAKKVVGEID---TPGCWLIYPSGNRGFSM 152 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-TTSSEEEEEE-----ESSSEEEEEEETTTTEEEEEEE---GTSEEEEEEEETTEEEE
T ss_pred ceEecCCcchheecccccceEEccCCcEEEEEc-----cCCCCeEEEEECCCCceeeeec---CCCEEEEEecCCCceEE
Confidence 4332222 2234578999999988742 3334468888988888765443 22232222111233555
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEE--ecCCCCc-eeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCc
Q 005315 417 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLE--LDNKNDK-IIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR 493 (702)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~h~~~-v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 493 (702)
.+.++. +..+.++..+......+ +..-..+ ...-+++..+..++..+-.| .|+-.++....
T Consensus 153 lC~DGs---------l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G---~v~~~dlsg~~---- 216 (342)
T PF06433_consen 153 LCGDGS---------LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG---NVYSADLSGDS---- 216 (342)
T ss_dssp EETTSC---------EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS---EEEEEEETTSS----
T ss_pred EecCCc---------eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC---EEEEEeccCCc----
Confidence 555554 45556655544432111 1111222 23445566666777777778 77777774332
Q ss_pred eEEEEEcC--------CC----ceeEEEEccCCCEEEEEec-cC------CCceEEEEECCCcceeeeccc-CceeeeEE
Q 005315 494 VSKLTTLK--------GK----QANALFWSPSGRFIVLAGL-KG------FNGQLEFYNVDELETMATAEH-FMATDVEW 553 (702)
Q Consensus 494 ~~~~~~~~--------~~----~v~~~~~spdg~~l~~~~~-~~------~dg~v~i~d~~~~~~~~~~~~-~~i~~~~~ 553 (702)
........ .+ .-..+++++....|++.-. +. ....|.+||+.+++.+...+. ..+.++..
T Consensus 217 ~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~V 296 (342)
T PF06433_consen 217 AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAV 296 (342)
T ss_dssp EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEE
T ss_pred ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEE
Confidence 11222211 11 1234788876655555322 11 223588889999999887663 56779999
Q ss_pred CCCCCEEEEE-EeecccccccEEEEEec-cceeeee
Q 005315 554 DPTGRYVATA-VTSVHEMENGFNIWSFN-GKLLYRT 587 (702)
Q Consensus 554 spdg~~l~t~-s~~~~~~d~~v~iw~~~-g~~l~~~ 587 (702)
+.+.+-++.+ +.. ++.+.+||.. |+++...
T Consensus 297 sqd~~P~L~~~~~~----~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 297 SQDDKPLLYALSAG----DGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ESSSS-EEEEEETT----TTEEEEEETTT--EEEEE
T ss_pred ccCCCcEEEEEcCC----CCeEEEEeCcCCcEEeeh
Confidence 9999855544 432 6889999965 6666554
No 356
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.24 E-value=2.1e-06 Score=86.71 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=69.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
--.++|.||| .+-+.+|..+|+.+|. ..|.||... .|+..|||||.|....+|..|++.+||..++++ ++.|-..-
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR-~VAVDWAV 194 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR-PVAVDWAV 194 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCc-eeEEeeec
Confidence 4579999999 9999999999999998 589999876 677779999999999999999999999999998 77766544
Q ss_pred Ccccc
Q 005315 137 DFDKF 141 (702)
Q Consensus 137 d~~~~ 141 (702)
+=+.|
T Consensus 195 ~Kd~y 199 (678)
T KOG0127|consen 195 DKDTY 199 (678)
T ss_pred ccccc
Confidence 43444
No 357
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.22 E-value=2.2e-05 Score=76.94 Aligned_cols=157 Identities=13% Similarity=0.193 Sum_probs=97.1
Q ss_pred EEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEe
Q 005315 406 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 485 (702)
Q Consensus 406 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 485 (702)
..++.|++++++..... ..++.+..............-...-+++.+-.+.....++..-|....+.+|..
T Consensus 69 ~~s~~~~llAv~~~~K~---------~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQ---------RAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccCCCceEEEEEeCCCc---------eEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 35788888888877654 345655543321111111111233344555555555555544442124445544
Q ss_pred ecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce---eeecccCceeeeEECCCCCEE
Q 005315 486 RTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDPTGRYV 560 (702)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~---~~~~~~~~i~~~~~spdg~~l 560 (702)
..+. ... +-+| .+..++||||+++|+++.. |..|++-.....-. ...+|..-|+.++.-++ +.|
T Consensus 140 ~~~~------~~~-~lGhvSml~dVavS~D~~~IitaDR---DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~L 208 (390)
T KOG3914|consen 140 DSGR------CEP-ILGHVSMLLDVAVSPDDQFIITADR---DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLL 208 (390)
T ss_pred cccC------cch-hhhhhhhhheeeecCCCCEEEEecC---CceEEEEecCcccchhhhccccHhheeeeeeccC-cee
Confidence 3211 111 1233 5789999999999999998 99999987764333 34478888999988765 558
Q ss_pred EEEEeecccccccEEEEEec-cceeeee
Q 005315 561 ATAVTSVHEMENGFNIWSFN-GKLLYRT 587 (702)
Q Consensus 561 ~t~s~~~~~~d~~v~iw~~~-g~~l~~~ 587 (702)
++++. |+++++||+. |+.+...
T Consensus 209 lS~sG-----D~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 209 LSGSG-----DKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eecCC-----CCcEEEEecccCCccccc
Confidence 99999 9999999986 6666543
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.21 E-value=0.0032 Score=67.23 Aligned_cols=259 Identities=13% Similarity=0.082 Sum_probs=135.9
Q ss_pred eEEEcCCCCcEEEEec--C----CeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCC------CcE
Q 005315 313 VFRWGGGKDKYFAKLG--K----NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQ------PAR 380 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~--d----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~------~~~ 380 (702)
.+.+|| ||+++|.+- . ..|+++|+.+++.+... +.......+.|+++++.+.+..... ... +..
T Consensus 128 ~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~--~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDE--DQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECST--TTSS-CCGCCEE
T ss_pred eeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCc--ccccccCCCCcE
Confidence 468899 999998764 3 35999999999776432 2222223499999999888754333 223 677
Q ss_pred EEEEecCCcce----eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCc---ceeEEEecCCC
Q 005315 381 VSLVQIPSKEE----LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI---PIEVLELDNKN 453 (702)
Q Consensus 381 i~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~l~~h~ 453 (702)
|+.+.+.+... +....-.....+.+.++++|++|++.+..+. . ...+|.++.... ......+..+.
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~------~-~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT------S-ESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS------S-EEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc------c-CCeEEEEeccccCCCcCCcEEEeCCC
Confidence 88888876532 2111111111345678999999998776654 1 134555544332 11112222223
Q ss_pred CceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEE
Q 005315 454 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 533 (702)
Q Consensus 454 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d 533 (702)
..+....-+..+.+++....+.+...|.-.++...... ....+..-+...+.-..++..+.+|++....+....|.+++
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPA-EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGG-GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccc-cceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 33333333334444444444444335555565443311 11211111122233344555677777766544456799999
Q ss_pred CC-Ccceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecccee
Q 005315 534 VD-ELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL 584 (702)
Q Consensus 534 ~~-~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l 584 (702)
+. +...... ...+.+..+...+++..+....++ .....+++-||+....+
T Consensus 356 ~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss-~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 356 LDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSS-FTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEE-TTEEEEEEEEETTTTCE
T ss_pred CCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeC-CCCCCEEEEEECCCCCE
Confidence 99 4444332 333556677777777765555443 11156777777765433
No 359
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=2e-06 Score=91.52 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=103.3
Q ss_pred CCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCC
Q 005315 192 HLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSN 268 (702)
Q Consensus 192 ~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~~ 268 (702)
.+++...|..|...-+|++||-+..+|+.|+..| |+++++. ++...... |...|+.+.=|.||..+++.+.-..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~-- 1166 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS-- 1166 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEcc-CccccccccccccccccccccCCcceeeeeccccC--
Confidence 4566677788888899999999999999999999 9999999 66655544 3345999999999998887765411
Q ss_pred CcCCCccEEEEEEcc-CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccce
Q 005315 269 PRDANRVVINIFDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK 346 (702)
Q Consensus 269 ~~~~~~~~i~vwd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~ 346 (702)
....+|+.. ++....+|.... ++.||. .-++-+.+. .....|||+.++..+.+.
T Consensus 1167 ------PlsaLW~~~s~~~~~Hsf~ed~-----------------~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1167 ------PLSALWDASSTGGPRHSFDEDK-----------------AVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred ------chHHHhccccccCccccccccc-----------------eeehhh-hHHHHHhcccccceEEEecccCcHHHHh
Confidence 135589974 344555554432 678887 655444444 567889999998876553
Q ss_pred eecc-C---CeeEEEeCCCCCeEE
Q 005315 347 SLKV-E---NVMDFSWSPTDPIIS 366 (702)
Q Consensus 347 ~~~~-~---~v~~~~~sp~~~~la 366 (702)
.... . .-+...|||++.+|.
T Consensus 1223 lt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred cCcchhhhhhccccccCCCcceEe
Confidence 1111 0 124567788777665
No 360
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.17 E-value=5.2e-06 Score=88.93 Aligned_cols=68 Identities=22% Similarity=0.295 Sum_probs=58.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcc--cc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVI--KE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~--~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
..+|||.||| .+++++|+++|+.+ ++ ..+.+ .+|||||+|.+.++|.+|++.|||..++++ .+.|..
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~--------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr-~I~V~~ 303 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK--------IRDYAFVHFEDREDAVKAMDELNGKELEGS-EIEVTL 303 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe--------ecCeEEEEeCCHHHHHHHHHHhCCCEECCE-EEEEEE
Confidence 3689999999 99999999999988 66 34433 367999999999999999999999999987 787775
Q ss_pred c
Q 005315 135 F 135 (702)
Q Consensus 135 ~ 135 (702)
-
T Consensus 304 A 304 (578)
T TIGR01648 304 A 304 (578)
T ss_pred c
Confidence 4
No 361
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.15 E-value=7.2e-06 Score=59.20 Aligned_cols=53 Identities=23% Similarity=0.348 Sum_probs=43.5
Q ss_pred HHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 75 FEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 75 ~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
|.++|+.+|+ ..+.+..+. +|+|||+|.+.++|..|++.|||..++++ +++|.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~-~l~V~ 54 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGR-PLKVS 54 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTE-EEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCc-EEEEE
Confidence 4578888888 467775442 79999999999999999999999999887 78775
No 362
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.14 E-value=0.00024 Score=73.82 Aligned_cols=91 Identities=15% Similarity=0.349 Sum_probs=66.4
Q ss_pred EEEEEEecCCcc-eeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEE
Q 005315 432 FELFRIKERDIP-IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 510 (702)
Q Consensus 432 ~~l~~l~~~~~~-~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 510 (702)
..+|.+...... +....+ .....|.+++++|+.+.|+.|+.|| .|.+||...+.. .... ..-..+.++|
T Consensus 238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~Dg---SiiLyD~~~~~t-----~~~k-a~~~P~~iaW 307 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDG---SIILYDTTRGVT-----LLAK-AEFIPTLIAW 307 (545)
T ss_pred EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCC---eEEEEEcCCCee-----eeee-ecccceEEEE
Confidence 455665543222 111222 3488999999999999999999999 999999854421 1111 1224688999
Q ss_pred ccCCCEEEEEeccCCCceEEEEECC
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
+|+|..+++++. .|.+.+||+.
T Consensus 308 Hp~gai~~V~s~---qGelQ~FD~A 329 (545)
T PF11768_consen 308 HPDGAIFVVGSE---QGELQCFDMA 329 (545)
T ss_pred cCCCcEEEEEcC---CceEEEEEee
Confidence 999999999997 8999999986
No 363
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=2e-06 Score=84.33 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=67.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCc-cCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK-LDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~-~~~~h~~~v~~~ 135 (702)
+..+||+-|+ .++|.+++.+|..+|. .+++|..|+ .|.+||+|||.|++.+-|..||+.|||.. +.+...=.|-+|
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 5678999999 9999999999999988 689999997 89999999999999999999999999964 444443344556
Q ss_pred cCccc
Q 005315 136 DDFDK 140 (702)
Q Consensus 136 ~d~~~ 140 (702)
.|-+|
T Consensus 203 ADtqk 207 (510)
T KOG0144|consen 203 ADTQK 207 (510)
T ss_pred cccCC
Confidence 65444
No 364
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.12 E-value=0.0065 Score=63.56 Aligned_cols=138 Identities=16% Similarity=0.291 Sum_probs=91.6
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEeeC-CcEEEEEEc----CC-CCCeEEEEEeecccCcCceEEEEEcC-CC
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHG----DS-PRPDISFYSMRTAQHAGRVSKLTTLK-GK 503 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~----d~-~~~~v~i~d~~~~~~~~~~~~~~~~~-~~ 503 (702)
++.++.+.... .+.+..---.....++.||-. ...+.+... ++ +.-.-.+|++...+ .....+.+++ ..
T Consensus 185 Nl~L~~~~~~k--lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k--lqrvsvtsipL~s 260 (545)
T PF11768_consen 185 NLHLLSCSGGK--LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK--LQRVSVTSIPLPS 260 (545)
T ss_pred cEEEEEecCCc--EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc--eeEEEEEEEecCC
Confidence 46666665432 222221111444566777763 334443322 22 11134567774322 2233455555 44
Q ss_pred ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 504 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 504 ~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
.+.+.+++|+...+++|+. ||.|.+||...+...........+.++|+|+|..+++|+. .|.+.+||..
T Consensus 261 ~v~~ca~sp~E~kLvlGC~---DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~-----qGelQ~FD~A 329 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCE---DGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSE-----QGELQCFDMA 329 (545)
T ss_pred cceEEecCcccceEEEEec---CCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcC-----CceEEEEEee
Confidence 7899999999999999999 9999999998765555555567789999999999999999 7999999975
No 365
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.10 E-value=0.0035 Score=65.97 Aligned_cols=257 Identities=12% Similarity=0.063 Sum_probs=127.0
Q ss_pred CCcEEEEEeCCc-eEEeecCcCcceeeeecCCC-eeE-EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEee
Q 005315 214 LGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKL-IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 290 (702)
Q Consensus 214 dg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~-i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~ 290 (702)
++..++.++.++ +..+|.. +++.+-+....+ +.+ ... .+..++.++.+ +.|..||..+|+.+..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~----------g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAE-DGKELWRAKLSSEVLSPPLV--ANGLVVVRTND----------GRLTALDAATGERLWT 170 (377)
T ss_pred cCCEEEEEcCCCEEEEEECC-CCcEeeeeccCceeecCCEE--ECCEEEEECCC----------CeEEEEEcCCCceeeE
Confidence 466677777776 7888987 777665554332 221 111 24566667777 8899999999998777
Q ss_pred ccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccC-C------eeEEEeCC--
Q 005315 291 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE-N------VMDFSWSP-- 360 (702)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~-~------v~~~~~sp-- 360 (702)
+........ ..+...| .. . ++ .++.+. ++.+..+|+.+++.+........ + +..+.-+|
T Consensus 171 ~~~~~~~~~------~~~~~sp--~~-~-~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 171 YSRVTPALT------LRGSASP--VI-A-DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred EccCCCcee------ecCCCCC--EE-E-CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE
Confidence 654432210 0000011 11 2 33 444444 78999999988876654322111 0 00111111
Q ss_pred CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecC
Q 005315 361 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 440 (702)
Q Consensus 361 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 440 (702)
.+..+.+ + .....++.++..+.+.+-...... ... ....+..+++...++. +..++....
T Consensus 240 ~~~~vy~-----~--~~~g~l~a~d~~tG~~~W~~~~~~--~~~--p~~~~~~vyv~~~~G~---------l~~~d~~tG 299 (377)
T TIGR03300 240 DGGQVYA-----V--SYQGRVAALDLRSGRVLWKRDASS--YQG--PAVDDNRLYVTDADGV---------VVALDRRSG 299 (377)
T ss_pred ECCEEEE-----E--EcCCEEEEEECCCCcEEEeeccCC--ccC--ceEeCCEEEEECCCCe---------EEEEECCCC
Confidence 1334443 1 122356667766655433222111 111 1224556665554433 333333221
Q ss_pred CcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCce-eEEEEccCCCEE
Q 005315 441 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQA-NALFWSPSGRFI 517 (702)
Q Consensus 441 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v-~~~~~spdg~~l 517 (702)
...-....+. .....+... .+.++++++.++ .|.+++..+++ .+.++. ...+ .+..+. ++ .|
T Consensus 300 ~~~W~~~~~~--~~~~ssp~i--~g~~l~~~~~~G---~l~~~d~~tG~------~~~~~~~~~~~~~~sp~~~-~~-~l 364 (377)
T TIGR03300 300 SELWKNDELK--YRQLTAPAV--VGGYLVVGDFEG---YLHWLSREDGS------FVARLKTDGSGIASPPVVV-GD-GL 364 (377)
T ss_pred cEEEcccccc--CCccccCEE--ECCEEEEEeCCC---EEEEEECCCCC------EEEEEEcCCCccccCCEEE-CC-EE
Confidence 1100000110 111122222 467888888888 89999987655 333333 2222 222322 33 46
Q ss_pred EEEeccCCCceEEEE
Q 005315 518 VLAGLKGFNGQLEFY 532 (702)
Q Consensus 518 ~~~~~~~~dg~v~i~ 532 (702)
++++. ||.|+.|
T Consensus 365 ~v~~~---dG~l~~~ 376 (377)
T TIGR03300 365 LVQTR---DGDLYAF 376 (377)
T ss_pred EEEeC---CceEEEe
Confidence 67776 8888765
No 366
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.09 E-value=1e-05 Score=87.35 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=57.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc---ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE---DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 128 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~---~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h 128 (702)
+.+|+|.||| .+++++|+++|+.+|. ..+.+..++ ++ .+|||||+|.+.++|..|+..|||+.+++++
T Consensus 394 s~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 394 SATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 4689999999 9999999999998886 244443222 33 6899999999999999999999999998775
No 367
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.09 E-value=6.4e-06 Score=81.34 Aligned_cols=72 Identities=28% Similarity=0.433 Sum_probs=60.9
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEeccC
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDD 137 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~d 137 (702)
.++||.||| .+++|.|++||+.+++ ..|..|.| ||||-|.+-++|.+|++.+||+.+++. .+-|.....
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~-~iEvtLAKP 330 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGS-PIEVTLAKP 330 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCc-eEEEEecCC
Confidence 479999999 9999999999999887 35555544 999999999999999999999999987 777666554
Q ss_pred ccc
Q 005315 138 FDK 140 (702)
Q Consensus 138 ~~~ 140 (702)
.++
T Consensus 331 ~~k 333 (506)
T KOG0117|consen 331 VDK 333 (506)
T ss_pred hhh
Confidence 433
No 368
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=0.0002 Score=76.57 Aligned_cols=301 Identities=10% Similarity=0.091 Sum_probs=159.1
Q ss_pred cccceEEECCCCcEEEEEeC----Cc-eEEeecCcCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005315 204 WTESFVQWSPLGTYLATVHR----QG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 277 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~----~~-i~iw~~~~~~~~~~~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i 277 (702)
..-+..+|+|...++|.++- .| |.|+--. +++.....-| .+.+++|+|..-.|+.|-.. |.+
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfadt--GEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~----------g~~ 83 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFADT--GEPQRDVTYPVHATSLCWHPEEFVLAQGWEM----------GVS 83 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEecC--CCCCcccccceehhhhccChHHHHHhhcccc----------cee
Confidence 34456789999999988763 23 6666433 2322222222 37789999998888888888 899
Q ss_pred EEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceee-c--cC--
Q 005315 278 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL-K--VE-- 351 (702)
Q Consensus 278 ~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~-~--~~-- 351 (702)
.+|...+.+.-.....|..++. .+.||+ +|..+.++. -|.+.+|...-...+....+ . ..
T Consensus 84 ~v~~~~~~e~htv~~th~a~i~-------------~l~wS~-~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ 149 (1416)
T KOG3617|consen 84 DVQKTNTTETHTVVETHPAPIQ-------------GLDWSH-DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQ 149 (1416)
T ss_pred EEEecCCceeeeeccCCCCCce-------------eEEecC-CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhce
Confidence 9999765554443444444432 689999 999999999 89999998763222211111 1 11
Q ss_pred -CeeEEEeCCCCCeEEEEeecCCCCCCCcE--EEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccc
Q 005315 352 -NVMDFSWSPTDPIISLFVPELGGGNQPAR--VSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 428 (702)
Q Consensus 352 -~v~~~~~sp~~~~la~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 428 (702)
...++..+|++.-++-......++|..+- .+.|... ........ .=.|+|..++++..+++
T Consensus 150 ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~----~a~rs~~k------sgv~~g~~F~~~~~~Gt------ 213 (1416)
T KOG3617|consen 150 LTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKES----LAERSDEK------SGVPKGTEFLFAGKSGT------ 213 (1416)
T ss_pred eeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccc----hhhccccc------cCCCCCcEEEEEcCCce------
Confidence 14566667764322100000011222211 1112111 11111101 12567777777776655
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeec-cc------------CcCc--
Q 005315 429 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT-AQ------------HAGR-- 493 (702)
Q Consensus 429 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~-~~------------~~~~-- 493 (702)
+|-++.++.......+ .+. ..+-|.|...-+.+...+- .+.+|-+.. |. ...+
T Consensus 214 -----Vyyvdq~g~~~~V~k~---dS~-vQmLf~~~~eai~~i~e~l---r~~l~~v~~~G~~ee~~~vk~sgk~GgrqG 281 (1416)
T KOG3617|consen 214 -----VYYVDQNGRQRTVHKL---DSE-VQMLFMGYCEAISIIIEFL---RDCLIFVLAKGTSEERCAVKVSGKLGGRQG 281 (1416)
T ss_pred -----EEEEcCCCcEEEEEEc---cch-HHHHHhcccceEEEEeeec---eeeEEEecCCCchHHhhhhhhccccCCccC
Confidence 5556655554444433 111 2233444333333333322 222222211 10 0000
Q ss_pred -------------eEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce----------eee--cccCce
Q 005315 494 -------------VSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET----------MAT--AEHFMA 548 (702)
Q Consensus 494 -------------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~----------~~~--~~~~~i 548 (702)
-.......+..+++++++..+..|..+.. .|.+.+|--.+... +.. ...+.|
T Consensus 282 giA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~---~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I 358 (1416)
T KOG3617|consen 282 GIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTK---EGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKI 358 (1416)
T ss_pred ccccccccccccCCcchhhhcCCceEEEEEeccceEEEeccc---CCcEEEeeecCccccCCCCcceEEecCchhhccce
Confidence 00111112446899999999999988887 89999995432111 111 223788
Q ss_pred eeeEECCCCCEEE
Q 005315 549 TDVEWDPTGRYVA 561 (702)
Q Consensus 549 ~~~~~spdg~~l~ 561 (702)
+.+.|.|--..++
T Consensus 359 ~~i~Wg~~k~~~a 371 (1416)
T KOG3617|consen 359 SLIRWGPIKSTAA 371 (1416)
T ss_pred EEEEeccccchhh
Confidence 9999999544433
No 369
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.05 E-value=3.9e-05 Score=75.30 Aligned_cols=95 Identities=11% Similarity=0.112 Sum_probs=70.3
Q ss_pred eEEeecCcCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccC-CCcccccCCC
Q 005315 226 AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG-SADEFAVGGT 303 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~-~~~~~~~~~~ 303 (702)
+.+|... .+.....++|-. +..++||||+++|+|+..| ..|+|-....--.+..|-. |..-++
T Consensus 134 ~di~s~~-~~~~~~~lGhvSml~dVavS~D~~~IitaDRD----------EkIRvs~ypa~f~IesfclGH~eFVS---- 198 (390)
T KOG3914|consen 134 FDILSAD-SGRCEPILGHVSMLLDVAVSPDDQFIITADRD----------EKIRVSRYPATFVIESFCLGHKEFVS---- 198 (390)
T ss_pred eeeeccc-ccCcchhhhhhhhhheeeecCCCCEEEEecCC----------ceEEEEecCcccchhhhccccHhhee----
Confidence 5588877 566666676665 9999999999999999999 8899887765555555544 544432
Q ss_pred CCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccce
Q 005315 304 GGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK 346 (702)
Q Consensus 304 ~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~ 346 (702)
.++.- ++..|++++ |++|++||+.+|+.++..
T Consensus 199 ---------~isl~--~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 199 ---------TISLT--DNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ---------eeeec--cCceeeecCCCCcEEEEecccCCccccc
Confidence 34444 455566666 999999999999888543
No 370
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.03 E-value=4.5e-06 Score=55.10 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=33.2
Q ss_pred CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEee
Q 005315 195 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWG 230 (702)
Q Consensus 195 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~ 230 (702)
+...+.+|...|++++|+|++.+||+++.|+ |++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567899999999999999999999999999 88997
No 371
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.03 E-value=8.9e-06 Score=70.49 Aligned_cols=79 Identities=22% Similarity=0.225 Sum_probs=66.1
Q ss_pred cCCCCcEEEECCCC-CCChhhHHHhHhccccc--cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 005315 55 ESGFGNIIVVDNLP-VVPKEKFEKLEGVIKED--GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 131 (702)
Q Consensus 55 ~~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~~--~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~ 131 (702)
+...+..++|+||. .+++.-|-++|+.+|.. --.+..|+.||+++||+||.|.+-+.+..|+..+||+-+..+ .++
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr-~it 170 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNR-PIT 170 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCC-ceE
Confidence 33455889999999 99999999999988872 224566777999999999999999999999999999988876 666
Q ss_pred EEe
Q 005315 132 VNM 134 (702)
Q Consensus 132 v~~ 134 (702)
|.-
T Consensus 171 v~y 173 (203)
T KOG0131|consen 171 VSY 173 (203)
T ss_pred EEE
Confidence 553
No 372
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0002 Score=71.26 Aligned_cols=214 Identities=11% Similarity=0.082 Sum_probs=130.2
Q ss_pred CCcccceEEECCCCcEEEEEeCCc-eEEeecCc-Ccce-eeee-cCC-CeeEEEecCCCCEEEEEcC-CCCCCCcCCCcc
Q 005315 202 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNR-LMRY-AHP-QVKLIDFSPGEKYLVTYSS-HEPSNPRDANRV 275 (702)
Q Consensus 202 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~-~~~~-~~~-~v~~i~fSpdg~~l~t~s~-d~~~~~~~~~~~ 275 (702)
|...|+.|.-+ -.+++.+++-|| ++.|.... .+.. +..| .|- -+.+++.|-+|..+.|.+. | .
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D----------h 76 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD----------H 76 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcc----------c
Confidence 45556555433 467899999999 88997662 1211 1112 233 3889999999999999776 7 7
Q ss_pred EEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC--cEEEEec--CCeEEEEecCCcc--cccceeec
Q 005315 276 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD--KYFAKLG--KNMISVYETESFT--LIDKKSLK 349 (702)
Q Consensus 276 ~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg--~~la~~~--d~~i~v~d~~~~~--~~~~~~~~ 349 (702)
.++++|+.+-..+.-++...-+- .. ++..++ .. ..||... ++.+.|+|-.... ......+|
T Consensus 77 s~KvfDvEn~DminmiKL~~lPg---------~a---~wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKLVDLPG---------FA---EWVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred ceeEEEeeccchhhhcccccCCC---------ce---EEecCC-CCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 89999987655443222221111 00 122233 21 1444444 8999999966433 33445578
Q ss_pred cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC-cceeeeeeecccccceeEEccCCCEEEEEEcccccccccc
Q 005315 350 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS-KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 428 (702)
Q Consensus 350 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 428 (702)
..+|..+.++|.+..+.+ .+..+.|-.|..+. .+- ....+.|.....
T Consensus 144 ~sPV~~i~y~qa~Ds~vS-------iD~~gmVEyWs~e~~~qf---------Pr~~l~~~~K~e---------------- 191 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVS-------IDISGMVEYWSAEGPFQF---------PRTNLNFELKHE---------------- 191 (558)
T ss_pred cCceEEEEeeccccceee-------ccccceeEeecCCCcccC---------cccccccccccc----------------
Confidence 889999999999988877 55555555554431 110 000111221111
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeeccc
Q 005315 429 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 489 (702)
Q Consensus 429 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 489 (702)
..+|.. +.......++.++|+|..+++.+.|. .|+++..++++
T Consensus 192 ---TdLy~f------------~K~Kt~pts~Efsp~g~qistl~~Dr---kVR~F~~KtGk 234 (558)
T KOG0882|consen 192 ---TDLYGF------------PKAKTEPTSFEFSPDGAQISTLNPDR---KVRGFVFKTGK 234 (558)
T ss_pred ---chhhcc------------cccccCccceEEccccCcccccCccc---EEEEEEeccch
Confidence 112211 11256678899999999999999888 99999998775
No 373
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.00 E-value=0.0011 Score=62.51 Aligned_cols=211 Identities=9% Similarity=0.072 Sum_probs=125.9
Q ss_pred eecCCCeeEEEecC---CCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEE
Q 005315 240 RYAHPQVKLIDFSP---GEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFR 315 (702)
Q Consensus 240 ~~~~~~v~~i~fSp---dg~-~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 315 (702)
...+..+..+.|+. +|. .|+-+... |.|.++..........+.+-..... ..+..+ ++.
T Consensus 66 ~~dts~~~dm~w~~~~~~g~~~l~~a~a~----------G~i~~~r~~~~~ss~~L~~ls~~ki----~~~~~l---slD 128 (339)
T KOG0280|consen 66 CTDTSTEFDMLWRIRETDGDFNLLDAHAR----------GQIQLYRNDEDESSVHLRGLSSKKI----SVVEAL---SLD 128 (339)
T ss_pred eecccccceeeeeeccCCccceeeecccc----------ceEEEEeeccceeeeeecccchhhh----hheeee---EEE
Confidence 33455566666763 344 34444455 7788887543333333332211100 000011 678
Q ss_pred EcCCCCcEEEEec-CCeEEEEecCCccccc--ceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCccee
Q 005315 316 WGGGKDKYFAKLG-KNMISVYETESFTLID--KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 392 (702)
Q Consensus 316 ~s~~dg~~la~~~-d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (702)
|++ .+.-++++. +|.+.+-+...+.+.. ....|.-.+....|+-..+-|++. ||.|+....|...+|..-..
T Consensus 129 ~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt----GgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 129 IST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT----GGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe----cCCCceEEEEEecCCcceee
Confidence 999 887776666 8888855444343332 223344446666777665545443 77777777777776664444
Q ss_pred eeeeecccccceeEEc-cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCc--EEE
Q 005315 393 RQKNLFSVSDCKMYWQ-SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH--RFA 469 (702)
Q Consensus 393 ~~~~~~~~~~~~~~~s-~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~--~l~ 469 (702)
.....+....+++.-+ |.+.++++++-+.. +++|+.+.-+.|+....+ .+.|..+.++|.-. .++
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~---------i~~~DtRnm~kPl~~~~v---~GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDEC---------IRVLDTRNMGKPLFKAKV---GGGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccc---------eeeeehhcccCccccCcc---ccceEEEEecchhhhHHHH
Confidence 5455666777777544 56789999888776 899999987777665555 78999999999533 344
Q ss_pred EEEcCCCCCeEEEEEeecc
Q 005315 470 VIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 470 ~~~~d~~~~~v~i~d~~~~ 488 (702)
++--.| .+|-+...+
T Consensus 272 ~CMh~G----~ki~~~~~~ 286 (339)
T KOG0280|consen 272 ACMHNG----AKILDSSDK 286 (339)
T ss_pred HHHhcC----ceEEEeccc
Confidence 333344 667676543
No 374
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=3.4e-05 Score=74.01 Aligned_cols=126 Identities=14% Similarity=0.118 Sum_probs=96.3
Q ss_pred CCcccceEEECCCCcEEEEEeCCc-eEEeecC----cCcceeeeecCCC-eeEEEecC-CCCEEEEEcCCCCCCCcCCCc
Q 005315 202 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGA----NTFNRLMRYAHPQ-VKLIDFSP-GEKYLVTYSSHEPSNPRDANR 274 (702)
Q Consensus 202 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~----~~~~~~~~~~~~~-v~~i~fSp-dg~~l~t~s~d~~~~~~~~~~ 274 (702)
....|.+++|.-.+.++..|+.+| |.+.|+. |++.+..++-|+. |+++..-. ++++|++.+.+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~---------- 320 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMT---------- 320 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCc----------
Confidence 457789999999999999999999 8888876 2345666776664 88887766 78999999999
Q ss_pred cEEEEEEccCCcE---EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeec
Q 005315 275 VVINIFDVRTGKV---MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 349 (702)
Q Consensus 275 ~~i~vwd~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~ 349 (702)
|.|++||++--++ ++++.+|..... +..+-..+ .+..+++++ |-..+||.+..+.++......
T Consensus 321 gkikLyD~R~~K~~~~V~qYeGHvN~~a-----------~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 321 GKIKLYDLRATKCKKSVMQYEGHVNLSA-----------YLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred CceeEeeehhhhcccceeeeeccccccc-----------cccccccc-ccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 9999999976666 888988865431 11234455 666777777 889999999999887655443
No 375
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0014 Score=64.60 Aligned_cols=89 Identities=19% Similarity=0.262 Sum_probs=65.9
Q ss_pred eEEeecCcCcceeeeecCC--CeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCC
Q 005315 226 AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGG 302 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~--~v~~i~fSpdg~-~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~ 302 (702)
+.+.+.. +++...-++.. .|..++|||... .|..++.+ ..|+|.|+.+...+..+..+...
T Consensus 175 v~~l~~~-~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~----------nkiki~dlet~~~vssy~a~~~~----- 238 (463)
T KOG1645|consen 175 VQKLESH-DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLG----------NKIKIMDLETSCVVSSYIAYNQI----- 238 (463)
T ss_pred eEEeccC-CcchhhcccccchhhhhhccCccccceeeeeccC----------ceEEEEecccceeeeheeccCCc-----
Confidence 4555555 45544433322 299999999887 67788888 89999999999998888877433
Q ss_pred CCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCc
Q 005315 303 TGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESF 340 (702)
Q Consensus 303 ~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~ 340 (702)
| +++|.- |+..++.++ +|.|.|||+..-
T Consensus 239 --------w-SC~wDl-de~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 239 --------W-SCCWDL-DERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred --------e-eeeecc-CCcceeEEeccCceEEEEEccCC
Confidence 6 579998 776555555 899999998743
No 376
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=5e-06 Score=88.68 Aligned_cols=213 Identities=11% Similarity=0.126 Sum_probs=131.0
Q ss_pred cceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 311 WPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 311 w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
+.|++||. +.++|+.|. .|.|++|++.+|........|...|+.+.-|-+|..+.+ .+.-...-..+|+..+
T Consensus 1104 fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lt-----sss~S~PlsaLW~~~s- 1176 (1516)
T KOG1832|consen 1104 FTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLT-----SSSSSSPLSALWDASS- 1176 (1516)
T ss_pred eeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeee-----eccccCchHHHhcccc-
Confidence 33899999 999999999 999999999999999888899999999999999988776 2222221222333322
Q ss_pred ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE-ecCCCCceeEEEEeeCCcEE
Q 005315 390 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE-LDNKNDKIIAFAWEPKGHRF 468 (702)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l 468 (702)
....+.-+.. +..+.|+.....-++++.... ..+|++.....-...+. ..+....-+...|||+.+.+
T Consensus 1177 -~~~~~Hsf~e-d~~vkFsn~~q~r~~gt~~d~---------a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1177 -TGGPRHSFDE-DKAVKFSNSLQFRALGTEADD---------ALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred -ccCccccccc-cceeehhhhHHHHHhcccccc---------eEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 1111111111 111234444333333333322 56787765432111010 00112333567899988765
Q ss_pred EEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCce-eEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCc
Q 005315 469 AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQA-NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFM 547 (702)
Q Consensus 469 ~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v-~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~ 547 (702)
. .|| .+||++... .++.+..-.+ -.=.|+|.|.-+++-+. |||+++.+++.+...-.
T Consensus 1246 l---ndG-----vLWDvR~~~------aIh~FD~ft~~~~G~FHP~g~eVIINSE--------IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1246 L---NDG-----VLWDVRIPE------AIHRFDQFTDYGGGGFHPSGNEVIINSE--------IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred e---eCc-----eeeeeccHH------HHhhhhhheecccccccCCCceEEeech--------hhhhHHHHHHhcCcccc
Confidence 4 355 489997654 3333332211 12358999999888664 89999999887766555
Q ss_pred eeeeEECCCCCEEEEE
Q 005315 548 ATDVEWDPTGRYVATA 563 (702)
Q Consensus 548 i~~~~~spdg~~l~t~ 563 (702)
-..+.|+..|..+...
T Consensus 1304 qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ceEEEeccCccchhhh
Confidence 5678899988765433
No 377
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.88 E-value=0.0042 Score=60.57 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=59.4
Q ss_pred eEEeecCcCcceeeeecCC-CeeEEE--ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCC
Q 005315 226 AAVWGGANTFNRLMRYAHP-QVKLID--FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGG 302 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~-~v~~i~--fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~ 302 (702)
|..||.. +++.+-+.... ...... ..+++.++++++.+ +.|..||..+|+.+..+.......
T Consensus 5 l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------~~l~~~d~~tG~~~W~~~~~~~~~---- 69 (238)
T PF13360_consen 5 LSALDPR-TGKELWSYDLGPGIGGPVATAVPDGGRVYVASGD----------GNLYALDAKTGKVLWRFDLPGPIS---- 69 (238)
T ss_dssp EEEEETT-TTEEEEEEECSSSCSSEEETEEEETTEEEEEETT----------SEEEEEETTTSEEEEEEECSSCGG----
T ss_pred EEEEECC-CCCEEEEEECCCCCCCccceEEEeCCEEEEEcCC----------CEEEEEECCCCCEEEEeecccccc----
Confidence 4556665 55555444331 122222 44467777777777 899999999999988877643322
Q ss_pred CCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccc
Q 005315 303 TGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDK 345 (702)
Q Consensus 303 ~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~ 345 (702)
. .. ... ++..++...++.+..+|..+++.+..
T Consensus 70 --------~-~~-~~~-~~~v~v~~~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 70 --------G-AP-VVD-GGRVYVGTSDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp --------S-GE-EEE-TTEEEEEETTSEEEEEETTTSCEEEE
T ss_pred --------c-ee-eec-ccccccccceeeeEecccCCcceeee
Confidence 1 11 222 45555555588999999999988776
No 378
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=8.8e-05 Score=75.25 Aligned_cols=273 Identities=12% Similarity=0.132 Sum_probs=149.7
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-------CcEEeeccCCCcccccCCCCCCCCcccceEEEc
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-------GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 317 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s 317 (702)
.|..++--.+++-+++++.| .+|++|.++. ..+..+++.|+.++. .+.|-
T Consensus 737 ~iRai~AidNENSFiSASkD----------KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~-------------~igfL 793 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKD----------KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIH-------------DIGFL 793 (1034)
T ss_pred HhHHHHhcccccceeeccCC----------ceEEEEEeccccCccccceeeeEhhhccCccc-------------ceeee
Confidence 37777666678888999999 9999999853 336667777877653 56777
Q ss_pred CCCCcEEEEecCCeEEEEecCCcccccceee--ccCCeeEEEeCCC-CCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 318 GGKDKYFAKLGKNMISVYETESFTLIDKKSL--KVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 318 ~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
. +-++++++ |+.|++||.--++++....- +.+.+..+..-|+ .+.|+... ++...+++ +++..+
T Consensus 794 ~-~lr~i~Sc-D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAg---csaeSTVK--l~DaRs------ 860 (1034)
T KOG4190|consen 794 A-DLRSIASC-DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAG---CSAESTVK--LFDARS------ 860 (1034)
T ss_pred e-ccceeeec-cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeee---ccchhhhe--eeeccc------
Confidence 7 77787755 67899999876665542210 1111222222222 22222200 11222222 222111
Q ss_pred eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcC
Q 005315 395 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 474 (702)
Q Consensus 395 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 474 (702)
+.+ ..-|++.. -++.+..+.+++..|.|++++.+-..
T Consensus 861 ----------------ce~------------------~~E~kVcn---------a~~Pna~~R~iaVa~~GN~lAa~LSn 897 (1034)
T KOG4190|consen 861 ----------------CEW------------------TCELKVCN---------APGPNALTRAIAVADKGNKLAAALSN 897 (1034)
T ss_pred ----------------ccc------------------eeeEEecc---------CCCCchheeEEEeccCcchhhHHhcC
Confidence 111 11122211 11235678899999999999999888
Q ss_pred CCCCeEEEEEeecccCcCceEEEEEcCCCceeEEE-EccCCCEEEEEeccCCCceEEE-EECCCcceeeecccCceeeeE
Q 005315 475 SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALF-WSPSGRFIVLAGLKGFNGQLEF-YNVDELETMATAEHFMATDVE 552 (702)
Q Consensus 475 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~-~spdg~~l~~~~~~~~dg~v~i-~d~~~~~~~~~~~~~~i~~~~ 552 (702)
| .+.+.|.+++. .+.......+.-+. -.|..+.|+.... |..+.+ |-.-++....+....+-..--
T Consensus 898 G---ci~~LDaR~G~------vINswrpmecdllqlaapsdq~L~~sal---dHslaVnWhaldgimh~q~kpppepahf 965 (1034)
T KOG4190|consen 898 G---CIAILDARNGK------VINSWRPMECDLLQLAAPSDQALAQSAL---DHSLAVNWHALDGIMHLQDKPPPEPAHF 965 (1034)
T ss_pred C---cEEEEecCCCc------eeccCCcccchhhhhcCchhHHHHhhcc---cceeEeeehhcCCeeeeccCCCCcchhh
Confidence 8 89999988765 33322221111111 1345566666655 778877 766655443332211111111
Q ss_pred ECCCCCEEEEEEeecccccccEEEEEeccce-----eeee----ccccEeeEEEeeCCCCCCChhhHHHH
Q 005315 553 WDPTGRYVATAVTSVHEMENGFNIWSFNGKL-----LYRT----LKDHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 553 ~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~-----l~~~----~~~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
.-.-|..|+++.. .+.+.+|.-.+.. +.+. ..+..+.++--|-...++.+.+.+.|
T Consensus 966 lqsvgpSLV~a~~-----Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~I 1030 (1034)
T KOG4190|consen 966 LQSVGPSLVTAQN-----GNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAI 1030 (1034)
T ss_pred hhccCceeEEecc-----CcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCce
Confidence 1223556777777 6777777543321 1111 22556677777766666666655544
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.0052 Score=58.13 Aligned_cols=141 Identities=16% Similarity=0.201 Sum_probs=88.5
Q ss_pred cceEEECCC-CcEEEEEeCCc--eEEeecCcCcceeeeecCCC----eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005315 206 ESFVQWSPL-GTYLATVHRQG--AAVWGGANTFNRLMRYAHPQ----VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 278 (702)
Q Consensus 206 v~~v~~Spd-g~~lat~~~~~--i~iw~~~~~~~~~~~~~~~~----v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~ 278 (702)
...++|+|. ..-++++-..| ..++|.. +.+......... --.=.|||||.+|.....| .+.+.|.|-
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~-~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd-----fd~~rGViG 143 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPN-GAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND-----FDPNRGVIG 143 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCC-CCcCcEEEecccCceeecccccCCCCcEEEeecCC-----CCCCCceEE
Confidence 345788886 45577777777 4588988 555444443221 3345799999999887766 345669999
Q ss_pred EEEccCC-cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCC-------------------eEEEEecC
Q 005315 279 IFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKN-------------------MISVYETE 338 (702)
Q Consensus 279 vwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~-------------------~i~v~d~~ 338 (702)
|||.+.+ ..+..+..+.-.. . .+.|.+ ||+.++....| .+.+.+..
T Consensus 144 vYd~r~~fqrvgE~~t~GiGp--------H-----ev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a 209 (366)
T COG3490 144 VYDAREGFQRVGEFSTHGIGP--------H-----EVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA 209 (366)
T ss_pred EEecccccceecccccCCcCc--------c-----eeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence 9998644 2344555443221 1 578999 99998876532 24445555
Q ss_pred Ccccccceeec----cCCeeEEEeCCCCCeEE
Q 005315 339 SFTLIDKKSLK----VENVMDFSWSPTDPIIS 366 (702)
Q Consensus 339 ~~~~~~~~~~~----~~~v~~~~~sp~~~~la 366 (702)
++.++.+..+. .-.+..++.-++|...+
T Consensus 210 tG~liekh~Lp~~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 210 TGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred ccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence 66666554332 22466677777766554
No 380
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.84 E-value=0.0028 Score=61.29 Aligned_cols=236 Identities=11% Similarity=0.174 Sum_probs=137.5
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc-cCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV-RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
.|+....-|-..-+++.+.| .+++||-- ..|+.-+.+....... ..++.+.+ ....
T Consensus 26 ~vn~~~l~~~e~gv~~~s~d----------rtvrv~lkrds~q~wpsI~~~mP~~------------~~~~~y~~-e~~~ 82 (404)
T KOG1409|consen 26 DVNAAILIPKEEGVISVSED----------RTVRVWLKRDSGQYWPSIYHYMPSP------------CSAMEYVS-ESRR 82 (404)
T ss_pred hhhhheeccCCCCeEEcccc----------ceeeeEEeccccccCchhhhhCCCC------------ceEeeeec-cceE
Confidence 37777777888889999999 89999953 3344333332211110 11567777 7777
Q ss_pred EEEec-CCeEEEEecC----CcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec
Q 005315 324 FAKLG-KNMISVYETE----SFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 398 (702)
Q Consensus 324 la~~~-d~~i~v~d~~----~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 398 (702)
|..+- +|++.-+.+. .+..+.....|...+..+.|+-....+++ .+.|....-.-.+ +...+....+
T Consensus 83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s-----~~~dk~~~~hc~e--~~~~lg~Y~~- 154 (404)
T KOG1409|consen 83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLS-----TGKDKQFAWHCTE--SGNRLGGYNF- 154 (404)
T ss_pred EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEE-----eccccceEEEeec--cCCcccceEe-
Confidence 77776 8888777544 33344444456667777777776666665 3333332211111 1111111100
Q ss_pred ccccceeEEccCCCEEE--EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC
Q 005315 399 SVSDCKMYWQSSGDYLA--VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 476 (702)
Q Consensus 399 ~~~~~~~~~s~~g~~l~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 476 (702)
. .+...-.+.+ .-..++ .+.+...++.....+ ....+.+|.+.+.+++|.|....+.++..|.
T Consensus 155 ~------~~~t~~~~d~~~~fvGd~-------~gqvt~lr~~~~~~~-~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~- 219 (404)
T KOG1409|consen 155 E------TPASALQFDALYAFVGDH-------SGQITMLKLEQNGCQ-LITTFNGHTGEVTCLKWDPGQRLLFSGASDH- 219 (404)
T ss_pred e------ccCCCCceeeEEEEeccc-------ccceEEEEEeecCCc-eEEEEcCcccceEEEEEcCCCcEEEeccccC-
Confidence 0 0000111111 111111 112344444333322 2355778999999999999999999999988
Q ss_pred CCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 477 RPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 477 ~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
.+.+||+-...+ ....+. .+.+..+..-+--+.+++++. ||.|.+|+.+.
T Consensus 220 --~vi~wdigg~~g-----~~~el~gh~~kV~~l~~~~~t~~l~S~~e---dg~i~~w~mn~ 271 (404)
T KOG1409|consen 220 --SVIMWDIGGRKG-----TAYELQGHNDKVQALSYAQHTRQLISCGE---DGGIVVWNMNV 271 (404)
T ss_pred --ceEEEeccCCcc-----eeeeeccchhhhhhhhhhhhheeeeeccC---CCeEEEEeccc
Confidence 899999954433 222333 335777777777788888887 99999999873
No 381
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.84 E-value=1.2e-05 Score=84.41 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=64.2
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 128 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h 128 (702)
.+.|+|.||| .++-..+++||..+|. .++.+|.--..+.++|||||+|.++++|.+|++.|.+.+|.++|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr 684 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRR 684 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechh
Confidence 6799999999 9999999999999988 58999987446778999999999999999999999999998885
No 382
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00097 Score=71.46 Aligned_cols=168 Identities=13% Similarity=0.126 Sum_probs=107.9
Q ss_pred cccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005315 204 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 282 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~ 282 (702)
..++|++++ +++||.|..+| +.+.+.+++. ...+.|... ..+|.|++||+.| |.|.|-.+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-----~~~Gey~asCS~D----------Gkv~I~sl 100 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-----ILEGEYVASCSDD----------GKVVIGSL 100 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc-----ccCCceEEEecCC----------CcEEEeec
Confidence 567888887 78999999998 7899887332 333444333 5689999999999 99999998
Q ss_pred cCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC-----CcEEEEec-CCeEEEEecCCcccccceee--ccCCee
Q 005315 283 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-----DKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVM 354 (702)
Q Consensus 283 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d-----g~~la~~~-d~~i~v~d~~~~~~~~~~~~--~~~~v~ 354 (702)
-+.+...++..+.... +++++| + .+.+++|+ .| +.++.-.=.+-.....+ ..+.|.
T Consensus 101 ~~~~~~~~~df~rpik--------------sial~P-d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~ 164 (846)
T KOG2066|consen 101 FTDDEITQYDFKRPIK--------------SIALHP-DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIH 164 (846)
T ss_pred cCCccceeEecCCcce--------------eEEecc-chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceE
Confidence 8887766655544333 578888 6 45677777 55 77776432111111112 234699
Q ss_pred EEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee------cccccceeEEccCCCEEEE
Q 005315 355 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL------FSVSDCKMYWQSSGDYLAV 416 (702)
Q Consensus 355 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~g~~l~~ 416 (702)
++.|. |++||. ++.. -|.+|+.+.++.+..... .....+.+.|.++.+.++-
T Consensus 165 ~i~W~--g~lIAW-----and~---Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG 222 (846)
T KOG2066|consen 165 SIKWR--GNLIAW-----ANDD---GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG 222 (846)
T ss_pred EEEec--CcEEEE-----ecCC---CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe
Confidence 99996 577775 2222 255677777665443322 1233456789887765543
No 383
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00011 Score=74.59 Aligned_cols=168 Identities=7% Similarity=0.098 Sum_probs=109.5
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc------eeeee--cCCCeeEEEecCCCCEEEEEcCCCCC
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN------RLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPS 267 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~------~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~ 267 (702)
..|.+|+..|+.++--.+.+-+++++.|. |++|.+...+. +..++ |...|.++.|-.+-++++++...
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g--- 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG--- 805 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc---
Confidence 35789999998887666677788888888 88998763222 23333 33459999999999999987644
Q ss_pred CCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCC-CCc-EEEEec-CCeEEEEecCCccccc
Q 005315 268 NPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDK-YFAKLG-KNMISVYETESFTLID 344 (702)
Q Consensus 268 ~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~-dg~-~la~~~-d~~i~v~d~~~~~~~~ 344 (702)
|.+||.--|+++.......... + .+ .+.--++ +.. .+|.++ ..+|+++|...+....
T Consensus 806 ---------iHlWDPFigr~Laq~~dapk~~----a---~~----~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~ 865 (1034)
T KOG4190|consen 806 ---------IHLWDPFIGRLLAQMEDAPKEG----A---GG----NIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC 865 (1034)
T ss_pred ---------ceeecccccchhHhhhcCcccC----C---Cc----eeEecccCcchheeeeccchhhheeeeccccccee
Confidence 9999987777765433211110 0 00 2222231 233 334445 8899999999876554
Q ss_pred ceeec-----cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 345 KKSLK-----VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 345 ~~~~~-----~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
..... ..-+.+++..|.|+.++. +-..+.|.+++..+++.+..
T Consensus 866 E~kVcna~~Pna~~R~iaVa~~GN~lAa-------~LSnGci~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 866 ELKVCNAPGPNALTRAIAVADKGNKLAA-------ALSNGCIAILDARNGKVINS 913 (1034)
T ss_pred eEEeccCCCCchheeEEEeccCcchhhH-------HhcCCcEEEEecCCCceecc
Confidence 43322 233789999999999987 33444566777777665543
No 384
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.81 E-value=2e-05 Score=73.53 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=54.8
Q ss_pred EEEECCCC-CCChhhHHHhHhccccc-cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIKED-GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~~~-~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+||+||| .+++.+++.||+.++++ ...|.+ .|+||-+++...|..||++|||++|++. -+.|..
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~-nInVea 70 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGV-NINVEA 70 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecce-EEEEEe
Confidence 57999999 99999999999998872 444544 4999999999999999999999999877 455443
No 385
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0029 Score=68.44 Aligned_cols=220 Identities=12% Similarity=0.130 Sum_probs=128.4
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC-cEEEEe
Q 005315 249 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKL 327 (702)
Q Consensus 249 i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg-~~la~~ 327 (702)
-+|++.+..+|.|+.+ |.|.+.+ .+-+.++.|+.+...+. .+-|.- ++ .+|++.
T Consensus 29 sc~~s~~~~vvigt~~----------G~V~~Ln-~s~~~~~~fqa~~~siv-------------~~L~~~-~~~~~L~sv 83 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTAD----------GRVVILN-SSFQLIRGFQAYEQSIV-------------QFLYIL-NKQNFLFSV 83 (933)
T ss_pred eEEcCCCceEEEeecc----------ccEEEec-ccceeeehheecchhhh-------------hHhhcc-cCceEEEEE
Confidence 3578889999999999 8877776 34555688887766521 334555 55 577777
Q ss_pred c-C-C----eEEEEecCCcc------cc---cceee----ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC
Q 005315 328 G-K-N----MISVYETESFT------LI---DKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 388 (702)
Q Consensus 328 ~-d-~----~i~v~d~~~~~------~~---~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 388 (702)
+ | + .++||+++.-. ++ ..... ...++..++.|.+-+.+|+ |-.+| .|..+...-
T Consensus 84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~-----Gf~nG--~V~~~~GDi 156 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVC-----GFTNG--LVICYKGDI 156 (933)
T ss_pred eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEE-----EecCc--EEEEEcCcc
Confidence 6 3 2 58999987431 11 00111 1224778888888888887 44444 444444322
Q ss_pred c--ceeeee--eecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC
Q 005315 389 K--EELRQK--NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 464 (702)
Q Consensus 389 ~--~~~~~~--~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 464 (702)
. +..+.. .........+.+..+|+.+++.+.... +.+|.+..++ | ....+..|..++.|-++++.
T Consensus 157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~---------V~~y~l~gr~-p-~~~~ld~~G~~lnCss~~~~ 225 (933)
T KOG2114|consen 157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQ---------VMLYSLSGRT-P-SLKVLDNNGISLNCSSFSDG 225 (933)
T ss_pred hhccccceeeeccCCCCceeeEEecCCceeEEEEecce---------eEEEEecCCC-c-ceeeeccCCccceeeecCCC
Confidence 1 111111 112344555667777776433333222 6888888655 2 23346677888899888876
Q ss_pred CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEe
Q 005315 465 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAG 521 (702)
Q Consensus 465 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 521 (702)
...|++++.. .|.+|+..... +-..+.-+.-.-+.|...|..|++..
T Consensus 226 t~qfIca~~e----~l~fY~sd~~~------~cfaf~~g~kk~~~~~~~g~~L~v~~ 272 (933)
T KOG2114|consen 226 TYQFICAGSE----FLYFYDSDGRG------PCFAFEVGEKKEMLVFSFGLLLCVTT 272 (933)
T ss_pred CccEEEecCc----eEEEEcCCCcc------eeeeecCCCeEEEEEEecCEEEEEEc
Confidence 6546655554 59999985432 33444422223344555565555543
No 386
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.79 E-value=4.7e-05 Score=69.03 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=58.0
Q ss_pred EEEECCCC-CCChhhHHH----hHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 61 IIVVDNLP-VVPKEKFEK----LEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~----l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
+|||.||+ .+..+++.+ ||+.+|+.--.++.- |.+.||-|||.|.+.+.|..|.++|+|+.|-++
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK 80 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGK 80 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCc
Confidence 99999999 899999999 999999853344443 789999999999999999999999999999877
No 387
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=7.1e-05 Score=76.49 Aligned_cols=72 Identities=22% Similarity=0.355 Sum_probs=64.3
Q ss_pred EEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEeccC
Q 005315 62 IVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDD 137 (702)
Q Consensus 62 ~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~d 137 (702)
|||.||+ .++-..+..+|+.+|+ .++.+..|+ .| +||| ||.|+++++|.+|+..+||.-+.++ .+.|-.+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k-ki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGK-KIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCC-eeEEeeccc
Confidence 9999999 9999999999999999 699999997 66 9999 9999999999999999999988776 555555443
No 388
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.0069 Score=64.33 Aligned_cols=114 Identities=11% Similarity=0.038 Sum_probs=83.8
Q ss_pred CCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005315 202 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 278 (702)
Q Consensus 202 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~ 278 (702)
|...+..-+++..++||+.|+..| +++++-.++..++... .+..+..+..|++..++|.|+.. +.|.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~----------g~V~ 101 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTAS----------GRVS 101 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCC----------ceEE
Confidence 445677778889999999999999 7788877444444444 33447778899999999999988 9999
Q ss_pred EEEccCCcEE---eeccC---CCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCC
Q 005315 279 IFDVRTGKVM---RDFKG---SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES 339 (702)
Q Consensus 279 vwd~~~g~~~---~~~~~---~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~ 339 (702)
|+-+..+.+- ..-.. |...++ ++.||+ |+..+.+|. .|.|..-.+.+
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~~~rVT-------------al~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSHKCRVT-------------ALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eehhhccCCCcceeeccccccCCceEE-------------EEEecc-cccEEeecCCCceEEEEEech
Confidence 9987654321 11111 223332 899999 999999999 89998888776
No 389
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.77 E-value=8.7e-05 Score=69.81 Aligned_cols=84 Identities=25% Similarity=0.338 Sum_probs=72.1
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEeccC
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDD 137 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~d 137 (702)
+.|+|.||| .|..+++.+||..++. ..+.|-+|+ .|++.|-|=|.|...++|..|++.+||..+|++ .+++.....
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~-~mk~~~i~~ 161 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGR-PMKIEIISS 161 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCc-eeeeEEecC
Confidence 579999999 9999999999998865 467788887 899999999999999999999999999999998 677777666
Q ss_pred cccccCCC
Q 005315 138 FDKFMKVP 145 (702)
Q Consensus 138 ~~~~~~~~ 145 (702)
-....+++
T Consensus 162 ~~~~~r~~ 169 (243)
T KOG0533|consen 162 PSQSKRLP 169 (243)
T ss_pred cccccccc
Confidence 55554444
No 390
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.77 E-value=0.031 Score=59.08 Aligned_cols=69 Identities=9% Similarity=0.019 Sum_probs=45.9
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEE
Q 005315 255 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISV 334 (702)
Q Consensus 255 g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v 334 (702)
+..++.++.+ +.+..+|..+|+.+........... .... . ++..++...++.+.-
T Consensus 120 ~~~v~v~~~~----------g~l~ald~~tG~~~W~~~~~~~~~s-------------sP~v-~-~~~v~v~~~~g~l~a 174 (394)
T PRK11138 120 GGKVYIGSEK----------GQVYALNAEDGEVAWQTKVAGEALS-------------RPVV-S-DGLVLVHTSNGMLQA 174 (394)
T ss_pred CCEEEEEcCC----------CEEEEEECCCCCCcccccCCCceec-------------CCEE-E-CCEEEEECCCCEEEE
Confidence 4566677777 8899999999998877765432110 1111 1 455555444889999
Q ss_pred EecCCcccccceee
Q 005315 335 YETESFTLIDKKSL 348 (702)
Q Consensus 335 ~d~~~~~~~~~~~~ 348 (702)
+|..+++.+.+...
T Consensus 175 ld~~tG~~~W~~~~ 188 (394)
T PRK11138 175 LNESDGAVKWTVNL 188 (394)
T ss_pred EEccCCCEeeeecC
Confidence 99999988766543
No 391
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.76 E-value=7.1e-05 Score=82.25 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=59.7
Q ss_pred CcEEEECCCCCCC-----------hhhHHHhHhcccc-ccEEeecC---CCCCceeeEEEEEeCCHHHHHHHHHHhCCCc
Q 005315 59 GNIIVVDNLPVVP-----------KEKFEKLEGVIKE-DGLWMPVD---PETQKSLGYCFIEYNTPQEAELAKEKTNGYK 123 (702)
Q Consensus 59 ~~~~~v~~lp~~~-----------~~~~~~l~~~~~~-~~~~~~~d---~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~ 123 (702)
..+|++.|++... .+++..+|..+|. ..+.||.+ ..++..+|||||+|.+.++|++|+..|||..
T Consensus 409 s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~ 488 (509)
T TIGR01642 409 TKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRK 488 (509)
T ss_pred ceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCE
Confidence 4678999997322 1467888888888 58888875 3346678999999999999999999999999
Q ss_pred cCCeeEEEEEe
Q 005315 124 LDRAHIFAVNM 134 (702)
Q Consensus 124 ~~~~h~~~v~~ 134 (702)
|+++ .+.+.-
T Consensus 489 ~~gr-~v~~~~ 498 (509)
T TIGR01642 489 FNDR-VVVAAF 498 (509)
T ss_pred ECCe-EEEEEE
Confidence 9987 665543
No 392
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.74 E-value=0.00071 Score=71.21 Aligned_cols=139 Identities=17% Similarity=0.341 Sum_probs=80.0
Q ss_pred cceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEE
Q 005315 402 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 481 (702)
Q Consensus 402 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 481 (702)
...+.++|+|+++++..+.. ..+|... .. ... . .+...+++|.+.+ .+|+..... +|.
T Consensus 35 p~~ls~npngr~v~V~g~ge----------Y~iyt~~--~~--r~k-~---~G~g~~~vw~~~n-~yAv~~~~~---~I~ 92 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGE----------YEIYTAL--AW--RNK-A---FGSGLSFVWSSRN-RYAVLESSS---TIK 92 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTE----------EEEEETT--TT--EEE-E---EEE-SEEEE-TSS-EEEEE-TTS----EE
T ss_pred CeeEEECCCCCEEEEEcCCE----------EEEEEcc--CC--ccc-c---cCceeEEEEecCc-cEEEEECCC---eEE
Confidence 34567899999999955432 3555511 11 111 1 3566779999955 567666655 788
Q ss_pred EE-EeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCE
Q 005315 482 FY-SMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRY 559 (702)
Q Consensus 482 i~-d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~ 559 (702)
|+ +++... ...+. ...+..+.. |..|++.+ ++.|.+||..+++.+.......|..+.||++|.+
T Consensus 93 I~kn~~~~~-------~k~i~~~~~~~~If~---G~LL~~~~----~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 93 IYKNFKNEV-------VKSIKLPFSVEKIFG---GNLLGVKS----SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGEL 158 (443)
T ss_dssp EEETTEE-T-------T-----SS-EEEEE----SSSEEEEE----TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSE
T ss_pred EEEcCcccc-------ceEEcCCcccceEEc---CcEEEEEC----CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCE
Confidence 86 332211 11121 123444443 88888877 5689999999999999988878999999999999
Q ss_pred EEEEEeecccccccEEEEEeccc
Q 005315 560 VATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 560 l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
+|..+. ..+.|++++-.
T Consensus 159 val~t~------~~i~il~~~~~ 175 (443)
T PF04053_consen 159 VALVTK------DSIYILKYNLE 175 (443)
T ss_dssp EEEE-S-------SEEEEEE-HH
T ss_pred EEEEeC------CeEEEEEecch
Confidence 999987 67778776544
No 393
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.74 E-value=0.013 Score=56.95 Aligned_cols=215 Identities=11% Similarity=0.044 Sum_probs=111.3
Q ss_pred cEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe-cCCeEEEEecCCcccccceeeccCCe
Q 005315 275 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-GKNMISVYETESFTLIDKKSLKVENV 353 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~-~d~~i~v~d~~~~~~~~~~~~~~~~v 353 (702)
++|..||..+|+.+.......... .+.....+ ++.++..+ .++.|..||..+|+.+........ +
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~------------~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~ 68 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIG------------GPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-I 68 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCS------------SEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-G
T ss_pred CEEEEEECCCCCEEEEEECCCCCC------------CccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-c
Confidence 789999999999988875422110 10111232 34445544 599999999999988776654221 1
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEE
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 433 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 433 (702)
...... .+..+++ ++.++ .++.++..+++.
T Consensus 69 ~~~~~~-~~~~v~v-----~~~~~--~l~~~d~~tG~~------------------------------------------ 98 (238)
T PF13360_consen 69 SGAPVV-DGGRVYV-----GTSDG--SLYALDAKTGKV------------------------------------------ 98 (238)
T ss_dssp GSGEEE-ETTEEEE-----EETTS--EEEEEETTTSCE------------------------------------------
T ss_pred cceeee-ccccccc-----cccee--eeEecccCCcce------------------------------------------
Confidence 111111 2223332 11222 455554433332
Q ss_pred EEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCc-------
Q 005315 434 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQ------- 504 (702)
Q Consensus 434 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~------- 504 (702)
+|.......+ . ............+..++++..++ .|..+|+++++ .+.... ...
T Consensus 99 ~W~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~g---~l~~~d~~tG~------~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 99 LWSIYLTSSP-------P-AGVRSSSSPAVDGDRLYVGTSSG---KLVALDPKTGK------LLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp EEEEEE-SSC-------T-CSTB--SEEEEETTEEEEEETCS---EEEEEETTTTE------EEEEEESSTT-SS--EEE
T ss_pred eeeecccccc-------c-cccccccCceEecCEEEEEeccC---cEEEEecCCCc------EEEEeecCCCCCCcceee
Confidence 2321100000 0 00111222223477777777666 78888876654 222221 111
Q ss_pred ---eeEEEEccCCCEEEEEeccCCCce-EEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 505 ---ANALFWSPSGRFIVLAGLKGFNGQ-LEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 505 ---v~~~~~spdg~~l~~~~~~~~dg~-v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+..-....++ .+++++. ++. +.+ |+.+++.+.......+.. ...+++..|+.++. ++.+..||+.
T Consensus 162 ~~~~~~~~~~~~~-~v~~~~~---~g~~~~~-d~~tg~~~w~~~~~~~~~-~~~~~~~~l~~~~~-----~~~l~~~d~~ 230 (238)
T PF13360_consen 162 FSDINGSPVISDG-RVYVSSG---DGRVVAV-DLATGEKLWSKPISGIYS-LPSVDGGTLYVTSS-----DGRLYALDLK 230 (238)
T ss_dssp ETTEEEEEECCTT-EEEEECC---TSSEEEE-ETTTTEEEEEECSS-ECE-CEECCCTEEEEEET-----TTEEEEEETT
T ss_pred ecccccceEEECC-EEEEEcC---CCeEEEE-ECCCCCEEEEecCCCccC-CceeeCCEEEEEeC-----CCEEEEEECC
Confidence 1122222245 6666655 665 555 999988664333222222 24577888888887 8999999987
Q ss_pred c
Q 005315 581 G 581 (702)
Q Consensus 581 g 581 (702)
.
T Consensus 231 t 231 (238)
T PF13360_consen 231 T 231 (238)
T ss_dssp T
T ss_pred C
Confidence 4
No 394
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.74 E-value=0.0086 Score=63.16 Aligned_cols=216 Identities=13% Similarity=0.293 Sum_probs=111.3
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
...++++|+|++++.++.. .-.|+.....+....-.+ . .+.|++ +++|.+
T Consensus 35 p~~ls~npngr~v~V~g~g-----------eY~iyt~~~~r~k~~G~g----~--------------~~vw~~-~n~yAv 84 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDG-----------EYEIYTALAWRNKAFGSG----L--------------SFVWSS-RNRYAV 84 (443)
T ss_dssp -SEEEE-TTSSEEEEEETT-----------EEEEEETTTTEEEEEEE-----S--------------EEEE-T-SSEEEE
T ss_pred CeeEEECCCCCEEEEEcCC-----------EEEEEEccCCcccccCce----e--------------EEEEec-CccEEE
Confidence 7899999999999996554 566776333232221111 1 578999 888766
Q ss_pred EecCCeEEEEecCCcccccceeeccC-CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccce
Q 005315 326 KLGKNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 404 (702)
Q Consensus 326 ~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 404 (702)
.-.++.|.|+.--+..... .+..+ .+..+-. |..|.+ .+.+ .|.+|+..+.+.++...... ...
T Consensus 85 ~~~~~~I~I~kn~~~~~~k--~i~~~~~~~~If~---G~LL~~-----~~~~---~i~~yDw~~~~~i~~i~v~~--vk~ 149 (443)
T PF04053_consen 85 LESSSTIKIYKNFKNEVVK--SIKLPFSVEKIFG---GNLLGV-----KSSD---FICFYDWETGKLIRRIDVSA--VKY 149 (443)
T ss_dssp E-TTS-EEEEETTEE-TT-------SS-EEEEE----SSSEEE-----EETT---EEEEE-TTT--EEEEESS-E---EE
T ss_pred EECCCeEEEEEcCccccce--EEcCCcccceEEc---CcEEEE-----ECCC---CEEEEEhhHcceeeEEecCC--CcE
Confidence 6668899997432222211 12222 2333332 788876 2122 68889998888887766443 345
Q ss_pred eEEccCCCEEEEEEcccccccccccccEEEEEEecC--------Ccc--ee-EEEecCCCCceeEEEEeeCCcEEEEEEc
Q 005315 405 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER--------DIP--IE-VLELDNKNDKIIAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 405 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~--------~~~--~~-~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 473 (702)
+.|+++|.+++..+.+.. .+++.+.. +.. .. ..++ ...|.+.+|.-+ .|+..+.
T Consensus 150 V~Ws~~g~~val~t~~~i----------~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~ 214 (443)
T PF04053_consen 150 VIWSDDGELVALVTKDSI----------YILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTS 214 (443)
T ss_dssp EEE-TTSSEEEEE-S-SE----------EEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-T
T ss_pred EEEECCCCEEEEEeCCeE----------EEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcC
Confidence 689999999999876642 44443322 111 11 1223 678999999755 5555544
Q ss_pred CCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 474 DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 474 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
. .++. +-.+. ...+.++ ..++.-+...|....+++... ++.+..+.++
T Consensus 215 ~----~lkY--l~~Ge----~~~i~~l-d~~~yllgy~~~~~~ly~~Dr---~~~v~~~~ld 262 (443)
T PF04053_consen 215 N----HLKY--LVNGE----TGIIAHL-DKPLYLLGYLPKENRLYLIDR---DGNVISYELD 262 (443)
T ss_dssp T----EEEE--EETTE----EEEEEE--SS--EEEEEETTTTEEEEE-T---T--EEEEE--
T ss_pred C----eEEE--EEcCC----cceEEEc-CCceEEEEEEccCCEEEEEEC---CCCEEEEEEC
Confidence 2 3554 43333 2255665 346777788887777777776 7788877776
No 395
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0062 Score=64.68 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=81.9
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccC--CCcccccCCCCCCCCcccceEEEcCCC
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
+..|..-+++..++||+.|+.. |.+++|+-..|+. +.++. .....+ ....|+ +
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~----------G~lyl~~R~~~~~-~~~~~~~~~~~~~-------------~~~vs~-~ 87 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSA----------GSVYLYNRHTGEM-RKLKNEGATGITC-------------VRSVSS-V 87 (726)
T ss_pred cceEEEEEeecCCceEEEeccc----------ceEEEEecCchhh-hcccccCccceEE-------------EEEecc-h
Confidence 4457788888999999999999 9999999655543 33333 222211 567788 8
Q ss_pred CcEEEEec-CCeEEEEecCCcccccce------eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC
Q 005315 321 DKYFAKLG-KNMISVYETESFTLIDKK------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 388 (702)
Q Consensus 321 g~~la~~~-d~~i~v~d~~~~~~~~~~------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 388 (702)
+.++|.++ .|.|.|+.+.....-... ..|...|++++|++++..+.+ +|..++|....+.+
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys-------GD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYS-------GDSQGKVVLTELDS 155 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEee-------cCCCceEEEEEech
Confidence 88888888 899999987753221111 113446999999999999998 78888887777766
No 396
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.71 E-value=0.043 Score=51.33 Aligned_cols=105 Identities=9% Similarity=-0.013 Sum_probs=66.5
Q ss_pred cEEEEEeCCc-eEEeecCcCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccC
Q 005315 216 TYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG 293 (702)
Q Consensus 216 ~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~ 293 (702)
++++.|+..+ +.--|.. ++..+-+--.. .+.+-+.- -|.+++.|... +.+++.++.+|.....|..
T Consensus 24 T~v~igSHs~~~~avd~~-sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~----------g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQ-SGNLIWEAILGVRIECSAIV-VGDFVVLGCYS----------GGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred eEEEEecCCceEEEecCC-CCcEEeehhhCceeeeeeEE-ECCEEEEEEcc----------CcEEEEEecchhheeeeee
Confidence 4555555555 3344555 44443332211 12222111 57889999999 8999999999987776654
Q ss_pred CCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccce
Q 005315 294 SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK 346 (702)
Q Consensus 294 ~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~ 346 (702)
-..... .....+ ++..+..++ |+..+..|..+...+.+.
T Consensus 92 ~~~vk~-------------~a~~d~-~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 92 LETVKV-------------RAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred hhhhcc-------------ceEEcC-CCceEEEecCCCcEEEecccccceEEec
Confidence 332211 235566 889999998 999999998877766543
No 397
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.70 E-value=9.3e-05 Score=72.89 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=66.3
Q ss_pred EEEECCCC-CCChhhHHHhHh-cccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEeccC
Q 005315 61 IIVVDNLP-VVPKEKFEKLEG-VIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDD 137 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~-~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~d 137 (702)
.+||.|+| ++-=.+|+.|+. .+++ .-+.+-.|+ +||+||.|.|||++++.+++|++.||-+.+.++ +|.|..--|
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR-~l~vKEd~d 123 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGR-ELVVKEDHD 123 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCc-eEEEeccCc
Confidence 49999999 999999999998 4455 467788886 899999999999999999999999999999988 888887655
No 398
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.70 E-value=0.00015 Score=47.64 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=32.4
Q ss_pred EEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEE
Q 005315 447 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 484 (702)
Q Consensus 447 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 484 (702)
..+.+|...|.+++|+|++.+|++++.|+ .|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~---~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDG---TIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTS---EEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCC---EEEEEC
Confidence 45678999999999999999999999999 999997
No 399
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.65 E-value=0.1 Score=58.09 Aligned_cols=313 Identities=11% Similarity=0.125 Sum_probs=147.7
Q ss_pred CeeEEEecCCC------CEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcC
Q 005315 245 QVKLIDFSPGE------KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 318 (702)
Q Consensus 245 ~v~~i~fSpdg------~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~ 318 (702)
.|.|+.++|-| ++++.|..+. -.+.+.-..+...+.........+ ++++- ...+-.
T Consensus 532 evaCLDisp~~d~~~~s~~~aVG~Ws~---------~~~~l~~~pd~~~~~~~~l~~~~i-------PRSIl--~~~~e~ 593 (1096)
T KOG1897|consen 532 EVACLDISPLGDAPNKSRLLAVGLWSD---------ISMILTFLPDLILITHEQLSGEII-------PRSIL--LTTFEG 593 (1096)
T ss_pred eeEEEecccCCCCCCcceEEEEEeecc---------eEEEEEECCCcceeeeeccCCCcc-------chhee--eEEeec
Confidence 49999999853 2577776651 123333334444443332221111 22222 235555
Q ss_pred CCCcEEEEec-CCeEEEEec--CCcccccceeec--cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 319 GKDKYFAKLG-KNMISVYET--ESFTLIDKKSLK--VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 319 ~dg~~la~~~-d~~i~v~d~--~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
|..||.++. ||.+.-|.+ .++..-..+..+ ..++.-..|+..+..-++ +..+.+.-++..+. .=.+.
T Consensus 594 -d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vf-----a~sdrP~viY~~n~--kLv~s 665 (1096)
T KOG1897|consen 594 -DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVF-----ALSDRPTVIYSSNG--KLVYS 665 (1096)
T ss_pred -cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEE-----EeCCCCEEEEecCC--cEEEe
Confidence 677887777 998876654 455544444222 334444455544433333 23566655443221 10111
Q ss_pred eeeecccccceeEEccC-CCEEEEEEcccccccccccccEEEEEEec-CCcceeEEEecCCCCceeEEEEeeCCcEEEEE
Q 005315 394 QKNLFSVSDCKMYWQSS-GDYLAVKVDRYTKTKKSTYTGFELFRIKE-RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 471 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~-g~~l~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~ 471 (702)
..++..+..++-.-++. +..|+....+. +.+..++. ....++++.+ ......+++.+....+++.
T Consensus 666 pls~kev~~~c~f~s~a~~d~l~~~~~~~----------l~i~tid~iqkl~irtvpl---~~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 666 PLSLKEVNHMCPFNSDAYPDSLASANGGA----------LTIGTIDEIQKLHIRTVPL---GESPRRICYQESSLTFGVL 732 (1096)
T ss_pred ccchHHhhhhcccccccCCceEEEecCCc----------eEEEEecchhhcceeeecC---CCChhheEecccceEEEEE
Confidence 11211111111111121 23444433322 45555554 2223333444 5667778888755555555
Q ss_pred EcCC--------CC---CeEEEEEeecccCcCceEEEEEcCCC----ceeEEEEccC-CCEEEEEeccC-------CCce
Q 005315 472 HGDS--------PR---PDISFYSMRTAQHAGRVSKLTTLKGK----QANALFWSPS-GRFIVLAGLKG-------FNGQ 528 (702)
Q Consensus 472 ~~d~--------~~---~~v~i~d~~~~~~~~~~~~~~~~~~~----~v~~~~~spd-g~~l~~~~~~~-------~dg~ 528 (702)
+... .. ..++++|-++-. ....+.+... .+.+..|..| +.++++|+.-. ..|.
T Consensus 733 s~r~e~~~~~~~ee~~~s~l~vlD~nTf~----vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR 808 (1096)
T KOG1897|consen 733 SNRIESSAEYYGEEYEVSFLRVLDQNTFE----VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR 808 (1096)
T ss_pred ecccccchhhcCCcceEEEEEEecCCcee----EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence 4321 11 134444432211 1112222211 3555668877 77888776311 3688
Q ss_pred EEEEECCCcceeeeccc----CceeeeEECCCCCEEEEEEeecccccccEEEEEeccc-eeeee--ccccEeeEEEeeCC
Q 005315 529 LEFYNVDELETMATAEH----FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRT--LKDHFFQFLWRPRP 601 (702)
Q Consensus 529 v~i~d~~~~~~~~~~~~----~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~l~~~--~~~~i~~~~w~p~~ 601 (702)
|.+|.+..+..+...+. +.+.++. --+|++||.-.. .+++|++..+ .++.. +..++..+...-.+
T Consensus 809 Iivfe~~e~~~L~~v~e~~v~Gav~aL~-~fngkllA~In~-------~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~g 880 (1096)
T KOG1897|consen 809 IIVFEFEELNSLELVAETVVKGAVYALV-EFNGKLLAGINQ-------SVRLYEWTTERELRIECNISNPIIALDLQVKG 880 (1096)
T ss_pred EEEEEEecCCceeeeeeeeeccceeehh-hhCCeEEEecCc-------EEEEEEccccceehhhhcccCCeEEEEEEecC
Confidence 88988876444433332 2232222 236787776655 8888887643 43322 23444444444444
Q ss_pred CCCCChh
Q 005315 602 PSFLTPE 608 (702)
Q Consensus 602 ~~l~s~~ 608 (702)
..++.+.
T Consensus 881 deI~VgD 887 (1096)
T KOG1897|consen 881 DEIAVGD 887 (1096)
T ss_pred cEEEEee
Confidence 4444443
No 400
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.63 E-value=0.012 Score=56.64 Aligned_cols=190 Identities=16% Similarity=0.227 Sum_probs=103.5
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 324 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~l 324 (702)
.+..|+|.|+.+.|++....+ +.|..++. +|+.++.+......- +-.+++.. ++.|+
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~---------~~i~els~-~G~vlr~i~l~g~~D------------~EgI~y~g-~~~~v 79 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEP---------GEIYELSL-DGKVLRRIPLDGFGD------------YEGITYLG-NGRYV 79 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTT---------TEEEEEET-T--EEEEEE-SS-SS------------EEEEEE-S-TTEEE
T ss_pred CccccEEcCCCCeEEEEECCC---------CEEEEEcC-CCCEEEEEeCCCCCC------------ceeEEEEC-CCEEE
Confidence 499999999877666555441 77888885 788888775442110 11678888 88888
Q ss_pred EEec-CCeEEEEecCCcc-ccc-----cee-----eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEec--CCcc
Q 005315 325 AKLG-KNMISVYETESFT-LID-----KKS-----LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI--PSKE 390 (702)
Q Consensus 325 a~~~-d~~i~v~d~~~~~-~~~-----~~~-----~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~--~~~~ 390 (702)
++.. ++.+.++++.... .+. +.. .+..++..++|.|.++.|.+ +....+..|+-++. ....
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-----~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-----AKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-----EEESSSEEEEEEESTT-SS-
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-----EeCCCChhhEEEccccCccc
Confidence 8776 8999998884322 111 111 12235889999999877776 32455666776665 1111
Q ss_pred e-------eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-------CCce
Q 005315 391 E-------LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-------NDKI 456 (702)
Q Consensus 391 ~-------~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-------~~~v 456 (702)
. +.....+......++++|....|++.++... .|..++..+.+...+.+... -...
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~----------~l~~~d~~G~~~~~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR----------LLLELDRQGRVVSSLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTT----------EEEEE-TT--EEEEEE-STTGGG-SS---SE
T ss_pred eeeccccccccccceeccccceEEcCCCCeEEEEECCCC----------eEEEECCCCCEEEEEEeCCcccCcccccCCc
Confidence 0 0111112223345567888777777776554 67777777777777777431 1246
Q ss_pred eEEEEeeCCcEEEEEEc
Q 005315 457 IAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 457 ~~~~~sp~g~~l~~~~~ 473 (702)
..+++.++|+.+++ +.
T Consensus 225 EGIa~d~~G~LYIv-sE 240 (248)
T PF06977_consen 225 EGIAFDPDGNLYIV-SE 240 (248)
T ss_dssp EEEEE-TT--EEEE-ET
T ss_pred cEEEECCCCCEEEE-cC
Confidence 77999999965544 44
No 401
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.58 E-value=0.014 Score=64.22 Aligned_cols=192 Identities=15% Similarity=0.131 Sum_probs=102.6
Q ss_pred CCeeEEEeCCCCCeEEEEeecC-CCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccc-ccc
Q 005315 351 ENVMDFSWSPTDPIISLFVPEL-GGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK-KST 428 (702)
Q Consensus 351 ~~v~~~~~sp~~~~la~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~-~~~ 428 (702)
..+.+.++||+|+.+++..... ...+....||+.+..... .... .........|+|+|..|++..+...... ...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt-~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVL-EGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeee-cCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4578899999999998864211 013455688888753221 1111 1112455689999999888765422000 000
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeec-ccCcCceEEEEEcC---CCc
Q 005315 429 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT-AQHAGRVSKLTTLK---GKQ 504 (702)
Q Consensus 429 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~-~~~~~~~~~~~~~~---~~~ 504 (702)
...-.+|.+......... .+ .+.|.++.|||||.++++... + .|.+--+.. ..+..++.....+. ...
T Consensus 427 ~~~gql~~~~vd~ge~~~-~~---~g~Issl~wSpDG~RiA~i~~-g---~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASAVAS-RV---PGPISELQLSRDGVRAAMIIG-G---KVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred CCCceEEEEeccCchhhh-cc---CCCcCeEEECCCCCEEEEEEC-C---EEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 011234433222211111 22 567999999999999999874 4 677744432 22211121112222 223
Q ss_pred eeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee-ec--ccCceeeeEECC
Q 005315 505 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-TA--EHFMATDVEWDP 555 (702)
Q Consensus 505 v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~-~~--~~~~i~~~~~sp 555 (702)
+.++.|.+++.++ ++..+. +..+...+++...... .. ....+..++=++
T Consensus 499 ~~~l~W~~~~~L~-V~~~~~-~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 499 AVSLDWRTGDSLV-VGRSDP-EHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred cccceEecCCEEE-EEecCC-CCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 5789999999965 444322 4456555666332211 11 134555666565
No 402
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.58 E-value=0.002 Score=59.85 Aligned_cols=176 Identities=7% Similarity=0.055 Sum_probs=98.3
Q ss_pred EecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec--CCCeeEEEecCCCCEEEEEc
Q 005315 186 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYS 262 (702)
Q Consensus 186 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~fSpdg~~l~t~s 262 (702)
.|+-.....+...+.+|+.+-.+-+.|--++.++++..+| +.+.+.+.-+....+.+ |.+-.+...-..+..|.++.
T Consensus 72 ~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~ 151 (319)
T KOG4714|consen 72 LWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGG 151 (319)
T ss_pred hhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCC
Confidence 5665455566777788888877888888899999999999 67888872122222221 22223333334455555543
Q ss_pred CCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc-EEEEec-CCeEEEEecCCc
Q 005315 263 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESF 340 (702)
Q Consensus 263 ~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~-~la~~~-d~~i~v~d~~~~ 340 (702)
-...... +..++|+++-.+.+..-......+ ++++-.| ..+ .+++++ +|.+.+||.+..
T Consensus 152 ~g~~n~~-----d~~~a~~~~p~~t~~~~~~~~~~v-------------~~l~~hp-~qq~~v~cgt~dg~~~l~d~rn~ 212 (319)
T KOG4714|consen 152 CGNWNAQ-----DNFYANTLDPIKTLIPSKKALDAV-------------TALCSHP-AQQHLVCCGTDDGIVGLWDARNV 212 (319)
T ss_pred cceEeec-----cceeeecccccccccccccccccc-------------hhhhCCc-ccccEEEEecCCCeEEEEEcccc
Confidence 2200000 234455543222211111111111 1455566 544 455555 999999999876
Q ss_pred ccccc-eeeccCCeeEEEeCCCC-CeEEEEeecCCCCCCCcEEEEEecC
Q 005315 341 TLIDK-KSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIP 387 (702)
Q Consensus 341 ~~~~~-~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~ 387 (702)
..... +..|...+..+-|+|.. ..|.+ ++.++ .+|.|+..
T Consensus 213 ~~p~S~l~ahk~~i~eV~FHpk~p~~Lft-----~sedG--slw~wdas 254 (319)
T KOG4714|consen 213 AMPVSLLKAHKAEIWEVHFHPKNPEHLFT-----CSEDG--SLWHWDAS 254 (319)
T ss_pred cchHHHHHHhhhhhhheeccCCCchheeE-----ecCCC--cEEEEcCC
Confidence 43322 23466779999999974 55666 44444 46666543
No 403
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=8.9e-05 Score=75.77 Aligned_cols=77 Identities=30% Similarity=0.392 Sum_probs=68.9
Q ss_pred CCCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 56 SGFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 56 ~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.-....+||.||+ .++.+++.++|..+|+ .+++|+.|. .|+++||+||+|+++++|..|+..+||..+.++ .+.|.
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k-~l~va 344 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGK-PLYVA 344 (369)
T ss_pred cccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHHHHHhhChhhhcCC-chhhh
Confidence 4467899999999 9999999999999999 689999996 899999999999999999999999999998877 55544
Q ss_pred e
Q 005315 134 M 134 (702)
Q Consensus 134 ~ 134 (702)
.
T Consensus 345 v 345 (369)
T KOG0123|consen 345 V 345 (369)
T ss_pred H
Confidence 3
No 404
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.56 E-value=0.076 Score=56.06 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=42.1
Q ss_pred CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee---cccCceeeeEECCCCCEEEEE
Q 005315 503 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVEWDPTGRYVATA 563 (702)
Q Consensus 503 ~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~---~~~~~i~~~~~spdg~~l~t~ 563 (702)
+++..++.||+|++||+-.. +|.+.+...+-.+.+.. ........+.|.-+...++..
T Consensus 217 ~~i~~iavSpng~~iAl~t~---~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTD---SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred CCeEEEEECCCCCEEEEEEC---CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe
Confidence 57999999999999999987 89999988764444432 223456678888776544444
No 405
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0017 Score=69.70 Aligned_cols=129 Identities=16% Similarity=0.263 Sum_probs=85.8
Q ss_pred CCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CCCeeEEEecCC-----CCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005315 212 SPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPG-----EKYLVTYSSHEPSNPRDANRVVINIFDVRT 284 (702)
Q Consensus 212 Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~fSpd-----g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~ 284 (702)
..+|.|+|+++.|| |.|-+.- +.....++. +..+.+|+++|+ .+.+++|+.. | +.++.-.=
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~-~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~a----------g-lvL~er~w 147 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLF-TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMA----------G-LVLSERNW 147 (846)
T ss_pred ccCCceEEEecCCCcEEEeecc-CCccceeEecCCcceeEEeccchhhhhhhheeecCcc----------e-EEEehhhh
Confidence 56899999999999 7777777 666666554 345999999998 4678888887 7 66664210
Q ss_pred -CcEEe-eccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCC------eeEE
Q 005315 285 -GKVMR-DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVEN------VMDF 356 (702)
Q Consensus 285 -g~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~------v~~~ 356 (702)
|.... .+.... +.+. +++| .|.+||-++|-.|+|||+.+.+.+......... -..+
T Consensus 148 lgnk~~v~l~~~e--------G~I~-----~i~W---~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl 211 (846)
T KOG2066|consen 148 LGNKDSVVLSEGE--------GPIH-----SIKW---RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHL 211 (846)
T ss_pred hcCccceeeecCc--------cceE-----EEEe---cCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCce
Confidence 11111 111122 2223 5677 668999999989999999988766433222221 3468
Q ss_pred EeCCCCCeEEEE
Q 005315 357 SWSPTDPIISLF 368 (702)
Q Consensus 357 ~~sp~~~~la~~ 368 (702)
.|.+..+.++-|
T Consensus 212 ~W~~~~~LVIGW 223 (846)
T KOG2066|consen 212 HWQDEDRLVIGW 223 (846)
T ss_pred EecCCCeEEEec
Confidence 898887777653
No 406
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.53 E-value=0.00035 Score=73.73 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=57.9
Q ss_pred EEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCC----ceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 62 IVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQ----KSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 62 ~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~----~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
|||.||+ ..+.+++..+|...|. .++.|+.-+ .+ .|.||+||+|.++++|+.|++.|+|..+|+. .+.+.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH-~l~lk 593 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH-KLELK 593 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCc-eEEEE
Confidence 9999999 9999999999998776 356666543 22 3569999999999999999999999999965 55444
No 407
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.51 E-value=0.00019 Score=65.93 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=62.4
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
.|..|+.+-|- .|+.+-+.+.|..+.. ....+..|..||+||||+||.|.++.++..|++.|||...+.+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 35679999999 8999999999997766 4678889989999999999999999999999999999987754
No 408
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.50 E-value=0.00015 Score=66.73 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=67.1
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCcc-CCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL-DRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~-~~~h~~~v~~ 134 (702)
-|..+||+-|- .-.|+++++||..+|. ..+.+-..+ +|.+||.|||.|.+..+|..||..|+|.+- -+...-.|-+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 36789999999 8999999999999888 455566555 799999999999999999999999999764 3433445666
Q ss_pred ccCcccc
Q 005315 135 FDDFDKF 141 (702)
Q Consensus 135 ~~d~~~~ 141 (702)
+.|.+|-
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 7776554
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.067 Score=50.92 Aligned_cols=266 Identities=13% Similarity=0.131 Sum_probs=135.6
Q ss_pred ceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceE
Q 005315 236 NRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 236 ~~~~~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 314 (702)
+.+.....+ ....|+|+|.-..-+.....+. ....++|..+++...++.......-.+ .=
T Consensus 59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPG--------tf~~vfD~~~~~~pv~~~s~~~RHfyG-----------HG 119 (366)
T COG3490 59 KIVFATALPARGHGIAFHPALPRAVAFARRPG--------TFAMVFDPNGAQEPVTLVSQEGRHFYG-----------HG 119 (366)
T ss_pred ceeeeeecccccCCeecCCCCcceEEEEecCC--------ceEEEECCCCCcCcEEEecccCceeec-----------cc
Confidence 333333333 2567889997665444443311 245688887777666555443332111 23
Q ss_pred EEcCCCCcEEEEec------CCeEEEEecCCc-ccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEE-EEec
Q 005315 315 RWGGGKDKYFAKLG------KNMISVYETESF-TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVS-LVQI 386 (702)
Q Consensus 315 ~~s~~dg~~la~~~------d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~-~~~~ 386 (702)
.||| ||.+|.... .|.|-|||...+ ..+.....+--+-..+.|.+||+.|++ .++.+... .+
T Consensus 120 vfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvv-------anGGIethpdf-- 189 (366)
T COG3490 120 VFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVV-------ANGGIETHPDF-- 189 (366)
T ss_pred ccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEE-------eCCceeccccc--
Confidence 7899 999988664 378999998732 223333344445678999999999998 33332211 00
Q ss_pred CCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec--CCCCceeEEEEeeC
Q 005315 387 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD--NKNDKIIAFAWEPK 464 (702)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~h~~~v~~~~~sp~ 464 (702)
.+.++ +... | .| .++ +.+- ..+.-+++..++ -+.-.|..++..+|
T Consensus 190 -gR~~l------Nlds--M--eP--Slv-------------------lld~-atG~liekh~Lp~~l~~lSiRHld~g~d 236 (366)
T COG3490 190 -GRTEL------NLDS--M--EP--SLV-------------------LLDA-ATGNLIEKHTLPASLRQLSIRHLDIGRD 236 (366)
T ss_pred -Ccccc------chhh--c--Cc--cEE-------------------EEec-cccchhhhccCchhhhhcceeeeeeCCC
Confidence 00000 0000 0 11 111 1110 111112223333 34556788888888
Q ss_pred CcEEEEEEcCCCCCeEE-EEEeecccCcCceEEEEEcC---------CCceeEEEEccCCCEEEEEeccCCCceEEEEEC
Q 005315 465 GHRFAVIHGDSPRPDIS-FYSMRTAQHAGRVSKLTTLK---------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 534 (702)
Q Consensus 465 g~~l~~~~~d~~~~~v~-i~d~~~~~~~~~~~~~~~~~---------~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~ 534 (702)
|...+-+-..|+.+..- +.-...+.. .+.-+. .+.+-+++.+-+-.++++.+- . .+...+||.
T Consensus 237 gtvwfgcQy~G~~~d~ppLvg~~~~g~-----~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP-~-GN~~vi~da 309 (366)
T COG3490 237 GTVWFGCQYRGPRNDLPPLVGHFRKGE-----PLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP-R-GNRAVIWDA 309 (366)
T ss_pred CcEEEEEEeeCCCccCCcceeeccCCC-----cCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC-C-CCeEEEEEc
Confidence 87666554433321110 000100000 222111 123667888776666666553 1 456788999
Q ss_pred CCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEE
Q 005315 535 DELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIW 577 (702)
Q Consensus 535 ~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw 577 (702)
.++.++....-..+..++-...| + +..+. ++.+.++
T Consensus 310 ~tG~vv~~a~l~daaGva~~~~g-f-~vssg-----~G~~~~~ 345 (366)
T COG3490 310 ATGAVVSEAALPDAAGVAAAKGG-F-AVSSG-----QGRIIFY 345 (366)
T ss_pred CCCcEEecccccccccceeccCc-e-EEecC-----CceEEec
Confidence 99998876544444444443333 3 33333 3566555
No 410
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.48 E-value=0.0002 Score=68.84 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=65.1
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
+.|||..+- +..+++++..|+.+|+ ..+.+..++.++..|||+||||.+.+.-..|+..||-+.|.+. -|+|-
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ-yLRVG 285 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-YLRVG 285 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccc-eEecc
Confidence 579999987 9999999999999999 6889999998888999999999999999999999999988876 44443
No 411
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.48 E-value=0.00026 Score=72.07 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=71.4
Q ss_pred cCCCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 55 ESGFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 55 ~~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
..+.+.++||.||. .+-..+|..||+.|++ ++..+..+..+--.+.|+||+|++.++|.++|.+|+-..|.++ +++|
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr-mISV 479 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR-MISV 479 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce-eeee
Confidence 35688999999999 7888999999999998 5888888865667789999999999999999999999999988 8888
Q ss_pred Eecc
Q 005315 133 NMFD 136 (702)
Q Consensus 133 ~~~~ 136 (702)
.+..
T Consensus 480 EkaK 483 (940)
T KOG4661|consen 480 EKAK 483 (940)
T ss_pred eecc
Confidence 7654
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.037 Score=53.07 Aligned_cols=167 Identities=15% Similarity=0.255 Sum_probs=107.0
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCC--cccccCCCCCCCCcccceEEEcCCC
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
+.++.++.|+|+.+.|++.... ..-.||=..+|+.+++++... +.. .+.|.. +
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~----------p~~iVElt~~GdlirtiPL~g~~DpE--------------~Ieyig-~ 139 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNK----------PAAIVELTKEGDLIRTIPLTGFSDPE--------------TIEYIG-G 139 (316)
T ss_pred cccccceeeCCCcceEEEecCC----------CceEEEEecCCceEEEecccccCChh--------------HeEEec-C
Confidence 3359999999999999888777 445567667999999876542 222 578888 8
Q ss_pred CcEEEEec-CCeEEEEecCCccc-cc--c-------eeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 321 DKYFAKLG-KNMISVYETESFTL-ID--K-------KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 321 g~~la~~~-d~~i~v~d~~~~~~-~~--~-------~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
++|+++-- ++.+.++.+..... +. . ......+...++|.|.+..|.+ +..-.+..|+.++....
T Consensus 140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-----aKEr~P~~I~~~~~~~~ 214 (316)
T COG3204 140 NQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-----AKERNPIGIFEVTQSPS 214 (316)
T ss_pred CEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-----EEccCCcEEEEEecCCc
Confidence 88887777 88888877664421 11 1 1112446789999999988877 44667888888774331
Q ss_pred c--------eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005315 390 E--------ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 449 (702)
Q Consensus 390 ~--------~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 449 (702)
. +-....++-.....+.+++....|++.++... .+..++..+.++..+.+
T Consensus 215 ~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr----------~l~Evd~~G~~~~~lsL 272 (316)
T COG3204 215 SLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR----------RLLEVDLSGEVIELLSL 272 (316)
T ss_pred ccccccccCcccccceEeeccccceecCCCCcEEEEecCCc----------eEEEEecCCCeeeeEEe
Confidence 1 11122233334445677877776666665433 45555555555555554
No 413
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.015 Score=57.57 Aligned_cols=239 Identities=14% Similarity=0.178 Sum_probs=129.8
Q ss_pred eEEEcCCCCc-EEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 313 VFRWGGGKDK-YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 313 ~~~~s~~dg~-~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
.++||| ... ++..++ ++.|+|.|+.+...+.....+ ..+.+.+|.-+....+|. ++..+.|.+||....+
T Consensus 198 dlafSp-~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa------Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 198 DLAFSP-FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA------GLQNGMVLVYDMRQPE 269 (463)
T ss_pred hhccCc-cccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE------eccCceEEEEEccCCC
Confidence 578999 666 566666 999999999988777666444 669999999988776662 5666777788775432
Q ss_pred e-----eeeeee---ccccccee-EEccCCCEEEEEEcccccccccccccEEEEEEecC-CcceeEEEecCCCCceeEEE
Q 005315 391 E-----LRQKNL---FSVSDCKM-YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER-DIPIEVLELDNKNDKIIAFA 460 (702)
Q Consensus 391 ~-----~~~~~~---~~~~~~~~-~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~h~~~v~~~~ 460 (702)
. ....+. ..+..+.- ...+.|..|+..... +..|.+... +.+....++ +..+...+++
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~-----------l~f~ei~~s~~~~p~vlel-e~pG~cismq 337 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV-----------LQFYEIVFSAECLPCVLEL-EPPGICISMQ 337 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehh-----------hhhhhhhccccCCCccccc-CCCcceeeee
Confidence 1 111111 11110000 123345555554443 234444321 222222333 3356777888
Q ss_pred EeeCCcEEEEEEcCCC-CCeEEEEE--eecccCcCceEEEEEcCCC------ceeEEEEccCCCEEEEEeccCCCceEEE
Q 005315 461 WEPKGHRFAVIHGDSP-RPDISFYS--MRTAQHAGRVSKLTTLKGK------QANALFWSPSGRFIVLAGLKGFNGQLEF 531 (702)
Q Consensus 461 ~sp~g~~l~~~~~d~~-~~~v~i~d--~~~~~~~~~~~~~~~~~~~------~v~~~~~spdg~~l~~~~~~~~dg~v~i 531 (702)
..+..+.+++.....+ .+++++-- +....+..-|..-.+..+. .-..+.=.++..+|+..+. ..+.+.+
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd--~tn~lil 415 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD--STNELIL 415 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC--CcceeEE
Confidence 8886676666655322 22333221 1111111111111122111 1123344566666665542 2688999
Q ss_pred EECCCcceeeeccc-CceeeeEECC-C-CCEEEEEEeecccccccEEEEEe
Q 005315 532 YNVDELETMATAEH-FMATDVEWDP-T-GRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 532 ~d~~~~~~~~~~~~-~~i~~~~~sp-d-g~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
||..+++++.+..- .++.+++... + +.||++-+. ..++||..
T Consensus 416 ~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd------~~v~Iyk~ 460 (463)
T KOG1645|consen 416 QDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTD------DRVHIYKN 460 (463)
T ss_pred eccchhheeeecccCcceeecceeecCCcchhhheec------ceEEEEec
Confidence 99999988876433 5666665433 2 336655554 67777754
No 414
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.14 Score=54.07 Aligned_cols=48 Identities=15% Similarity=0.369 Sum_probs=36.7
Q ss_pred EEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecC
Q 005315 276 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE 338 (702)
Q Consensus 276 ~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~ 338 (702)
.|.||+ .+|+++.++.-..+.+. .+.|+. +..+++...+|.+++|++.
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv-------------~~~wt~-~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIV-------------GMGWTD-DEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEE-------------EEEECC-CCeEEEEEcCCEEEEEeCC
Confidence 488888 47777777654443332 789999 8888888889999999986
No 415
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.46 E-value=0.3 Score=54.54 Aligned_cols=358 Identities=13% Similarity=0.155 Sum_probs=177.8
Q ss_pred ceEEEEeCCceEEEecCCCCCCCcccccCC--CcccceEEECCCC------cEEEEEeCCc-e-EEeecCcCcceeeee-
Q 005315 173 DQFVIRSGTDTEVLWNDARHLKPEPVYKRS--YWTESFVQWSPLG------TYLATVHRQG-A-AVWGGANTFNRLMRY- 241 (702)
Q Consensus 173 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~v~~v~~Spdg------~~lat~~~~~-i-~iw~~~~~~~~~~~~- 241 (702)
.|.++..++...++-.....+ .....++ ...|.|+.+||-| +++|.|..+. + .|--.+ ....+...
T Consensus 500 sqVvvA~~~~~l~y~~i~~~~--l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p-d~~~~~~~~ 576 (1096)
T KOG1897|consen 500 SQVVVAGGGLALFYLEIEDGG--LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP-DLILITHEQ 576 (1096)
T ss_pred eEEEEecCccEEEEEEeeccc--eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC-Ccceeeeec
Confidence 366666665555454442222 1111122 3678999999863 3678887666 2 233333 33333333
Q ss_pred -cC---C-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc--cCCcEEeec--cCCCcccccCCCCCCCCcccc
Q 005315 242 -AH---P-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV--RTGKVMRDF--KGSADEFAVGGTGGVAGVSWP 312 (702)
Q Consensus 242 -~~---~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~--~~g~~~~~~--~~~~~~~~~~~~~~~~~~~w~ 312 (702)
.. | .|....|--|..||.++..+ |.+.-|.+ .+|..-..- .....+++
T Consensus 577 l~~~~iPRSIl~~~~e~d~~yLlvalgd----------G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~------------- 633 (1096)
T KOG1897|consen 577 LSGEIIPRSILLTTFEGDIHYLLVALGD----------GALLYFVLDINTGQLSDRKKVTLGTQPIS------------- 633 (1096)
T ss_pred cCCCccchheeeEEeeccceEEEEEcCC----------ceEEEEEEEcccceEccccccccCCCCcE-------------
Confidence 21 1 25566676778999999999 87765544 444431111 11111111
Q ss_pred eEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEE-EeCCC--CCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 313 VFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDF-SWSPT--DPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~-~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
...|+.....++.+++|.-..+|.....-+.... ....+..+ .|+.+ ...|++ + .++...+..++--..
T Consensus 634 Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spl--s~kev~~~c~f~s~a~~d~l~~-----~-~~~~l~i~tid~iqk 705 (1096)
T KOG1897|consen 634 LRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPL--SLKEVNHMCPFNSDAYPDSLAS-----A-NGGALTIGTIDEIQK 705 (1096)
T ss_pred EEEEeeCCceEEEEeCCCCEEEEecCCcEEEecc--chHHhhhhcccccccCCceEEE-----e-cCCceEEEEecchhh
Confidence 3455552455677777777777765522111111 11112221 12222 234444 1 333444443332111
Q ss_pred ceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc--EEEEEEecCCcceeEEE---ecC--CCCceeEEEEe
Q 005315 390 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG--FELFRIKERDIPIEVLE---LDN--KNDKIIAFAWE 462 (702)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~---l~~--h~~~v~~~~~s 462 (702)
-.++... ......++++++....+.+.+.+...+...+..+ +...++-+.. ..+.+. +.. ....+.++.|.
T Consensus 706 l~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n-Tf~vl~~hef~~~E~~~Si~s~~~~ 783 (1096)
T KOG1897|consen 706 LHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN-TFEVLSSHEFERNETALSIISCKFT 783 (1096)
T ss_pred cceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC-ceeEEeeccccccceeeeeeeeeec
Confidence 1122211 2334445667776666666666543222111111 2222222111 111111 100 01234555677
Q ss_pred eC-CcEEEEEEc----CC--C-CCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEE
Q 005315 463 PK-GHRFAVIHG----DS--P-RPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 533 (702)
Q Consensus 463 p~-g~~l~~~~~----d~--~-~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d 533 (702)
.| +.++++|++ |. + ...|.+|.+...+ +.+.+.... .+.+.++. --+|+++|.. +..|++|+
T Consensus 784 ~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~---~L~~v~e~~v~Gav~aL~-~fngkllA~I-----n~~vrLye 854 (1096)
T KOG1897|consen 784 DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN---SLELVAETVVKGAVYALV-EFNGKLLAGI-----NQSVRLYE 854 (1096)
T ss_pred CCCceEEEEEEEeeccCCCCcccceEEEEEEecCC---ceeeeeeeeeccceeehh-hhCCeEEEec-----CcEEEEEE
Confidence 66 778888875 11 1 1278888886621 233333322 22233322 1257777655 46999999
Q ss_pred CCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 534 VDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 534 ~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
..+.+.+.. .+..++..+...-.|..++.|.. -+.+.+-.+.
T Consensus 855 ~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl-----m~Sitll~y~ 898 (1096)
T KOG1897|consen 855 WTTERELRIECNISNPIIALDLQVKGDEIAVGDL-----MRSITLLQYK 898 (1096)
T ss_pred ccccceehhhhcccCCeEEEEEEecCcEEEEeec-----cceEEEEEEe
Confidence 998766554 55678888899999999999987 4555554443
No 416
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.46 E-value=0.0017 Score=70.58 Aligned_cols=116 Identities=9% Similarity=0.086 Sum_probs=81.5
Q ss_pred cEEEEEeC-CceEEeecCcCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeecc
Q 005315 216 TYLATVHR-QGAAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK 292 (702)
Q Consensus 216 ~~lat~~~-~~i~iw~~~~~~~~~~~~~--~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~ 292 (702)
..+..|+- +.+..+|.. +.+.....+ .++|.-+ -.+++++.+|... |+|.+-|..+.+.+.++.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~-~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~----------G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLN-TEKETRTTNVSASGVTIM--RYNNRNLFCGDTR----------GTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred cceeecchhhheeeeecc-cceeeeeeeccCCceEEE--EecCcEEEeeccc----------ceEEeecCCcCceeeeee
Confidence 34444444 447788887 555544443 3344444 4478999999999 999999999999999999
Q ss_pred CCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C---------CeEEEEecCCcccccceeeccCCeeEEEeCCC
Q 005315 293 GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K---------NMISVYETESFTLIDKKSLKVENVMDFSWSPT 361 (702)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d---------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~ 361 (702)
.|.+.+ ..|.- .|+.|++++ . .-|+|||++.++.+.....+..+ .-+.|.|.
T Consensus 215 aHs~si---------------SDfDv-~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Ps 276 (1118)
T KOG1275|consen 215 AHSGSI---------------SDFDV-QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPS 276 (1118)
T ss_pred ccccce---------------eeeec-cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccc
Confidence 998876 36666 788888876 2 35899999988877655444443 34456665
No 417
>PRK10115 protease 2; Provisional
Probab=97.44 E-value=0.11 Score=58.72 Aligned_cols=249 Identities=11% Similarity=0.097 Sum_probs=122.1
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
+..+.|||||++|+.+... .+.....|++.|+.+|..+........ . .+.|++ |++.|+
T Consensus 129 l~~~~~Spdg~~la~~~d~-----~G~E~~~l~v~d~~tg~~l~~~i~~~~-~--------------~~~w~~-D~~~~~ 187 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDF-----LSRRQYGIRFRNLETGNWYPELLDNVE-P--------------SFVWAN-DSWTFY 187 (686)
T ss_pred EeEEEECCCCCEEEEEecC-----CCcEEEEEEEEECCCCCCCCccccCcc-e--------------EEEEee-CCCEEE
Confidence 7788999999999877544 222336799999988864322111111 1 579999 998776
Q ss_pred Eec--C-----CeEEEEecCCcccccceeec--cCCee-EEEeCCCCCeEEEEeecCCCCCCCcEEEEEec--CCcceee
Q 005315 326 KLG--K-----NMISVYETESFTLIDKKSLK--VENVM-DFSWSPTDPIISLFVPELGGGNQPARVSLVQI--PSKEELR 393 (702)
Q Consensus 326 ~~~--d-----~~i~v~d~~~~~~~~~~~~~--~~~v~-~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~--~~~~~~~ 393 (702)
... + ..|..+++.++......... ..... .+..+.+++++++... ......+++++. +......
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~----~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLA----SATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEE----CCccccEEEEECcCCCCCceE
Confidence 654 2 35667777766322222121 11122 2333447777764322 333446666663 2222111
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC--CCceeEEEEeeCCcEEEEE
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK--NDKIIAFAWEPKGHRFAVI 471 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h--~~~v~~~~~sp~g~~l~~~ 471 (702)
.. .............+..+.+.++.+. .+..|+.+.... +.....+-.+ ...+..+.++ +++|++.
T Consensus 264 ~~--~~~~~~~~~~~~~~~~ly~~tn~~~-------~~~~l~~~~~~~-~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~ 331 (686)
T PRK10115 264 FL--PRRKDHEYSLDHYQHRFYLRSNRHG-------KNFGLYRTRVRD-EQQWEELIPPRENIMLEGFTLF--TDWLVVE 331 (686)
T ss_pred EE--ECCCCCEEEEEeCCCEEEEEEcCCC-------CCceEEEecCCC-cccCeEEECCCCCCEEEEEEEE--CCEEEEE
Confidence 11 1111111222223355555554321 113455444321 1111122233 2367778876 5566666
Q ss_pred EcCCCCCeEEEEEeecccCcCceEEEEEcC-CC--ceeEEEEc--cCCC-EEEEEeccCCCceEEEEECCCcc
Q 005315 472 HGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GK--QANALFWS--PSGR-FIVLAGLKGFNGQLEFYNVDELE 538 (702)
Q Consensus 472 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~--~v~~~~~s--pdg~-~l~~~~~~~~dg~v~i~d~~~~~ 538 (702)
..++....+.++++.++ .+..+. .. .+..+.++ +++. +++..+.-..-+.+..+|+.+++
T Consensus 332 ~~~~g~~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 332 ERQRGLTSLRQINRKTR-------EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEeCCEEEEEEEcCCCC-------ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 66544445666665321 122222 11 22333445 4444 44443333346889999988654
No 418
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.44 E-value=0.0011 Score=59.66 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=59.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEee-cCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe--eEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMP-VDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA--HIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~-~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~--h~~~v~ 133 (702)
=+++||.||| +|..-++-.||..+.. .+..+- .++..+.++=+||+.|.+.+.|..|+..|||..||-. .+|.+.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 4689999999 9999999999996554 233333 3333345678999999999999999999999999843 255554
Q ss_pred eccC
Q 005315 134 MFDD 137 (702)
Q Consensus 134 ~~~d 137 (702)
....
T Consensus 114 lAKS 117 (284)
T KOG1457|consen 114 LAKS 117 (284)
T ss_pred ehhc
Confidence 4433
No 419
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.38 E-value=0.011 Score=64.89 Aligned_cols=147 Identities=11% Similarity=0.096 Sum_probs=84.2
Q ss_pred CCCcccceEEECCCCcEEEEEe------CCc-eEEe--ecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCC--CC
Q 005315 201 RSYWTESFVQWSPLGTYLATVH------RQG-AAVW--GGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPS--NP 269 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~------~~~-i~iw--~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~--~~ 269 (702)
+....+..++.||||+.+|+.. .+. -.|| +..+....+ . .........|||||+.|++.+..... ..
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-t-~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-L-EGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-e-cCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3334678999999999999876 233 3455 433122222 2 22348899999999988887643100 00
Q ss_pred cCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEE---EecCCcc--ccc
Q 005315 270 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISV---YETESFT--LID 344 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v---~d~~~~~--~~~ 344 (702)
.....+.+.+.++..+.....+. ..+. .++||| ||..+|...++.|.| -....+. +..
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~---g~Is-------------sl~wSp-DG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~ 487 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVP---GPIS-------------ELQLSR-DGVRAAMIIGGKVYLAVVEQTEDGQYALTN 487 (591)
T ss_pred ccCCCceEEEEeccCchhhhccC---CCcC-------------eEEECC-CCCEEEEEECCEEEEEEEEeCCCCceeecc
Confidence 01112445555554444322111 1121 789999 999999888888777 3333342 111
Q ss_pred ceee--ccCC-eeEEEeCCCCCeEE
Q 005315 345 KKSL--KVEN-VMDFSWSPTDPIIS 366 (702)
Q Consensus 345 ~~~~--~~~~-v~~~~~sp~~~~la 366 (702)
...+ .... +.++.|.+++.+++
T Consensus 488 ~~~l~~~l~~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWRTGDSLVV 512 (591)
T ss_pred cEEeecccCCccccceEecCCEEEE
Confidence 1111 2223 57899999998553
No 420
>PRK10115 protease 2; Provisional
Probab=97.37 E-value=0.16 Score=57.48 Aligned_cols=117 Identities=10% Similarity=0.013 Sum_probs=71.4
Q ss_pred CcccceEEECCCCcEEEEEeCCc------eEEeecCcCcceeee-ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005315 203 YWTESFVQWSPLGTYLATVHRQG------AAVWGGANTFNRLMR-YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV 275 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~~------i~iw~~~~~~~~~~~-~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~ 275 (702)
.+.+..+.|||||++||.+...+ +.+.++. ++..+.. +.... ..++|++|++.|+....++. .....
T Consensus 126 ~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~-tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~----~~~~~ 199 (686)
T PRK10115 126 FYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE-TGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPV----TLLPY 199 (686)
T ss_pred cEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC-CCCCCCccccCcc-eEEEEeeCCCEEEEEEecCC----CCCCC
Confidence 46788899999999999876432 5577887 4442222 11112 46999999998877766421 01125
Q ss_pred EEEEEEccCC--cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec----CCeEEEEecC
Q 005315 276 VINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETE 338 (702)
Q Consensus 276 ~i~vwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~----d~~i~v~d~~ 338 (702)
.|+.+++.++ +....+....... |.....+. |+++++..+ ++.+.+|+.+
T Consensus 200 ~v~~h~lgt~~~~d~lv~~e~~~~~------------~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 200 QVWRHTIGTPASQDELVYEEKDDTF------------YVSLHKTT-SKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEEEECCCChhHCeEEEeeCCCCE------------EEEEEEcC-CCCEEEEEEECCccccEEEEECc
Confidence 7899999888 3333444322222 21334455 777665433 5678888853
No 421
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.35 E-value=0.031 Score=53.93 Aligned_cols=183 Identities=9% Similarity=0.134 Sum_probs=99.7
Q ss_pred ceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEE
Q 005315 403 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDIS 481 (702)
Q Consensus 403 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~ 481 (702)
..++|+|+...|++..+... .|+.++..+..+..+.+.+ .+....+++..++.++ .... ++ .+.
T Consensus 25 SGLTy~pd~~tLfaV~d~~~----------~i~els~~G~vlr~i~l~g-~~D~EgI~y~g~~~~v-l~~Er~~---~L~ 89 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPG----------EIYELSLDGKVLRRIPLDG-FGDYEGITYLGNGRYV-LSEERDQ---RLY 89 (248)
T ss_dssp EEEEEETTTTEEEEEETTTT----------EEEEEETT--EEEEEE-SS--SSEEEEEE-STTEEE-EEETTTT---EEE
T ss_pred cccEEcCCCCeEEEEECCCC----------EEEEEcCCCCEEEEEeCCC-CCCceeEEEECCCEEE-EEEcCCC---cEE
Confidence 45689999888777777654 6788887777777777744 4677888887666544 4443 45 888
Q ss_pred EEEeecccCcCceEEEEEcC-------CCceeEEEEccCCCEEEEEeccCCCceEEEEECCC----ccee--e-------
Q 005315 482 FYSMRTAQHAGRVSKLTTLK-------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE----LETM--A------- 541 (702)
Q Consensus 482 i~d~~~~~~~~~~~~~~~~~-------~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~----~~~~--~------- 541 (702)
++++...........+..+. +...-.++|+|.++.|+++.. ..-..+|.+.. .... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE---~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE---RKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE---SSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC---CCChhhEEEccccCccceeeccccccccc
Confidence 88885432221122222221 124678999999888888765 33444554432 1111 1
Q ss_pred ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeeecc-----------ccEeeEEEeeCCCCCCCh
Q 005315 542 TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK-----------DHFFQFLWRPRPPSFLTP 607 (702)
Q Consensus 542 ~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~~-----------~~i~~~~w~p~~~~l~s~ 607 (702)
......+++++++|....|+.-|.. ...+.++|.+|+.+..... ...-.+++.|+|+..+++
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~e----s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDE----SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETT----TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cceeccccceEEcCCCCeEEEEECC----CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 0123457789999976655555543 6778888888876553321 346778999998755543
No 422
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.33 E-value=0.0034 Score=58.38 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=53.1
Q ss_pred ceeEEEEeeCCc-EEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEcc-CCCEEEEEeccCCCceEE
Q 005315 455 KIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSP-SGRFIVLAGLKGFNGQLE 530 (702)
Q Consensus 455 ~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~sp-dg~~l~~~~~~~~dg~v~ 530 (702)
.|.+++-+|..+ .+++++.+| .+.+||++.... ++..+. ..+++.+.|+| ++..|++++. ||.+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg---~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHpk~p~~Lft~se---dGslw 249 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDG---IVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHPKNPEHLFTCSE---DGSLW 249 (319)
T ss_pred cchhhhCCcccccEEEEecCCC---eEEEEEcccccc-----hHHHHHHhhhhhhheeccCCCchheeEecC---CCcEE
Confidence 488899899554 555666677 899999976532 333333 34789999999 4678999988 99999
Q ss_pred EEECCC
Q 005315 531 FYNVDE 536 (702)
Q Consensus 531 i~d~~~ 536 (702)
-||..+
T Consensus 250 ~wdas~ 255 (319)
T KOG4714|consen 250 HWDAST 255 (319)
T ss_pred EEcCCC
Confidence 999884
No 423
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00036 Score=66.94 Aligned_cols=82 Identities=24% Similarity=0.269 Sum_probs=72.0
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.|++||=.|- +++.++|+-+|+.+|+ .++.+..|..||-+.-||||+|.+.+..++|...|++.-+|.+ .+.|---
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr-RIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR-RIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc-eEEeehh
Confidence 45899999997 9999999999999999 6999999999999999999999999999999999999999877 6666544
Q ss_pred cCccc
Q 005315 136 DDFDK 140 (702)
Q Consensus 136 ~d~~~ 140 (702)
+.+.+
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 44444
No 424
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.09 Score=55.07 Aligned_cols=190 Identities=12% Similarity=0.045 Sum_probs=124.9
Q ss_pred cccceEEECCCCcEEEEEe--CCceEEeecCcCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005315 204 WTESFVQWSPLGTYLATVH--RQGAAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 280 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~--~~~i~iw~~~~~~~~~~~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vw 280 (702)
..-..++.+++|+.++... .+.|.+.|.. ........... ....++++|+++++..+.... ..+++.+.
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~-------~~~~vsvi 145 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN-------GNNTVSVI 145 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCc-ccceeeEeeeccCCceEEECCCCCEEEEEeccc-------CCceEEEE
Confidence 3345788999998666555 3448899977 55555555433 578999999998887776631 11789999
Q ss_pred EccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCccccc-ce---eeccCCee
Q 005315 281 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLID-KK---SLKVENVM 354 (702)
Q Consensus 281 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~-~~---~~~~~~v~ 354 (702)
|..+++.+........+. .+.++| +|+.+.... ++.|.+.+..+..... .. ......-.
T Consensus 146 d~~t~~~~~~~~vG~~P~--------------~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~ 210 (381)
T COG3391 146 DAATNKVTATIPVGNTPT--------------GVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPA 210 (381)
T ss_pred eCCCCeEEEEEecCCCcc--------------eEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCc
Confidence 998888887755443332 579999 999776666 8999999977665552 10 11223357
Q ss_pred EEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc-ccceeEEccCCCEEEEEEcc
Q 005315 355 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-SDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 355 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~l~~~~~~ 420 (702)
.+.++|+|..+.+... ......+..++............... ....+..+|+|.++.+....
T Consensus 211 ~i~v~~~g~~~yV~~~----~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 211 GIAVDPDGNRVYVAND----GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred eEEECCCCCEEEEEec----cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence 8899999997665211 22235777787777665443221111 33345678999988876544
No 425
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.29 E-value=0.0036 Score=68.14 Aligned_cols=149 Identities=13% Similarity=0.193 Sum_probs=99.5
Q ss_pred CCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEE
Q 005315 212 SPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 288 (702)
Q Consensus 212 Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~ 288 (702)
-.++++|.+|+..| |.+-|.. +++.+.++. |.+ |. +|+-.|+.|++++...-.. .-.-+.-|+|||++..+.+
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~-s~~~iht~~aHs~siS--DfDv~GNlLitCG~S~R~~-~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPN-SFETIHTFDAHSGSIS--DFDVQGNLLITCGYSMRRY-NLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred EecCcEEEeecccceEEeecCC-cCceeeeeecccccee--eeeccCCeEEEeecccccc-cccccchhhhhhhhhhhcc
Confidence 34689999999999 7899999 999999995 444 54 4555799999998651110 0011146899999988887
Q ss_pred eeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc-c-ccceeec--cCCeeEEEeCCCCC
Q 005315 289 RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-L-IDKKSLK--VENVMDFSWSPTDP 363 (702)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~-~-~~~~~~~--~~~v~~~~~sp~~~ 363 (702)
.-+..+.++. .++|.|.-...+|.++ .|...+-|..+.. . ...+..+ ..++..+.+|++++
T Consensus 260 ~PI~~~~~P~--------------flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~ 325 (1118)
T KOG1275|consen 260 SPIQFPYGPQ--------------FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD 325 (1118)
T ss_pred CCcccccCch--------------hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc
Confidence 7777766654 5677773223444444 8999888843221 1 2222222 23489999999999
Q ss_pred eEEEEeecCCCCCCCcEEEEEe
Q 005315 364 IISLFVPELGGGNQPARVSLVQ 385 (702)
Q Consensus 364 ~la~~~~~~~~~~~~~~i~~~~ 385 (702)
.+|+ ++..+.|.+|.
T Consensus 326 alaf-------gd~~g~v~~wa 340 (1118)
T KOG1275|consen 326 ALAF-------GDHEGHVNLWA 340 (1118)
T ss_pred eEEE-------ecccCcEeeec
Confidence 9999 55555555554
No 426
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.26 E-value=0.26 Score=52.14 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=63.5
Q ss_pred CcEEEEEeCCc-eEEeecCcCcceeeeecCCC-ee-EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeec
Q 005315 215 GTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VK-LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 291 (702)
Q Consensus 215 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~-~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~ 291 (702)
+..++.++.++ +..+|.. +++.+-+...++ +. +... .+..++.+..+ +.|..+|..+|+.+-.+
T Consensus 120 ~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~----------g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAE-DGEVAWQTKVAGEALSRPVV--SDGLVLVHTSN----------GMLQALNESDGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECC-CCCCcccccCCCceecCCEE--ECCEEEEECCC----------CEEEEEEccCCCEeeee
Confidence 44555666666 7788888 777666554332 21 1122 23456666667 78999999999988777
Q ss_pred cCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccce
Q 005315 292 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK 346 (702)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~ 346 (702)
........ ..+..-| ... ++..++...++.+..++..+++.+...
T Consensus 187 ~~~~~~~~------~~~~~sP--~v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 187 NLDVPSLT------LRGESAP--ATA--FGGAIVGGDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cCCCCccc------ccCCCCC--EEE--CCEEEEEcCCCEEEEEEccCChhhhee
Confidence 64321110 0000111 111 344444444888888898888776554
No 427
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.24 E-value=0.058 Score=55.26 Aligned_cols=223 Identities=12% Similarity=0.188 Sum_probs=108.9
Q ss_pred eEEeecCcCcceeeeecCC---Cee---EEEecCC----CCEEEEEcCCCCCCCcCCCccEEEEEEccCC----cEEeec
Q 005315 226 AAVWGGANTFNRLMRYAHP---QVK---LIDFSPG----EKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDF 291 (702)
Q Consensus 226 i~iw~~~~~~~~~~~~~~~---~v~---~i~fSpd----g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g----~~~~~~ 291 (702)
|+|.|.. +++.+.++..+ .+. .+.|..+ ..||+.|..-..........|.|.++++... ..++.+
T Consensus 4 i~l~d~~-~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 4 IRLVDPT-TFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEETT-TSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEeCC-CCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 6788887 77777666422 244 4445443 4788877754222212222289999999874 222222
Q ss_pred cCC--CcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcc-cccceeeccC-CeeEEEeCCCCCeEEE
Q 005315 292 KGS--ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFT-LIDKKSLKVE-NVMDFSWSPTDPIISL 367 (702)
Q Consensus 292 ~~~--~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~-~~~~~~~~~~-~v~~~~~sp~~~~la~ 367 (702)
... .+. ..+..+ -+.+|+.+.++.|.+|++...+ +......+.. .+.++... +++|++
T Consensus 83 ~~~~~~g~---------------V~ai~~-~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~v 144 (321)
T PF03178_consen 83 HSTEVKGP---------------VTAICS-FNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILV 144 (321)
T ss_dssp EEEEESS----------------EEEEEE-ETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEE
T ss_pred EEEeecCc---------------ceEhhh-hCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEE
Confidence 111 111 223333 3345777778999999998776 3332222221 23333332 345554
Q ss_pred EeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEE
Q 005315 368 FVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVL 447 (702)
Q Consensus 368 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 447 (702)
+.....+.+.. |+.++..|.. +
T Consensus 145 -----gD~~~sv~~~~-----------------------~~~~~~~l~~------------------------------v 166 (321)
T PF03178_consen 145 -----GDAMKSVSLLR-----------------------YDEENNKLIL------------------------------V 166 (321)
T ss_dssp -----EESSSSEEEEE-----------------------EETTTE-EEE------------------------------E
T ss_pred -----EEcccCEEEEE-----------------------EEccCCEEEE------------------------------E
Confidence 21222222222 2222221111 1
Q ss_pred EecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeeccc----CcC-ceEEEEEcC-CCceeEE---EEcc--CCC-
Q 005315 448 ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ----HAG-RVSKLTTLK-GKQANAL---FWSP--SGR- 515 (702)
Q Consensus 448 ~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~----~~~-~~~~~~~~~-~~~v~~~---~~sp--dg~- 515 (702)
.-......++++.+-++++.++++..++ ++.++...... ... +......++ +..++++ ++.| .+.
T Consensus 167 a~d~~~~~v~~~~~l~d~~~~i~~D~~g---nl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~ 243 (321)
T PF03178_consen 167 ARDYQPRWVTAAEFLVDEDTIIVGDKDG---NLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSE 243 (321)
T ss_dssp EEESS-BEEEEEEEE-SSSEEEEEETTS---EEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-
T ss_pred EecCCCccEEEEEEecCCcEEEEEcCCC---eEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCc
Confidence 1111245577777876777777777788 89888876311 111 344455554 4467776 5555 222
Q ss_pred -----EEEEEeccCCCceEEE
Q 005315 516 -----FIVLAGLKGFNGQLEF 531 (702)
Q Consensus 516 -----~l~~~~~~~~dg~v~i 531 (702)
.++.++. +|.|..
T Consensus 244 ~~~~~~i~~~T~---~G~Ig~ 261 (321)
T PF03178_consen 244 SPNRPQILYGTV---DGSIGV 261 (321)
T ss_dssp TTEEEEEEEEET---TS-EEE
T ss_pred ccccceEEEEec---CCEEEE
Confidence 3666666 888873
No 428
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.16 Score=50.86 Aligned_cols=151 Identities=11% Similarity=0.038 Sum_probs=82.3
Q ss_pred eEEECCCCcEEEEEeCCc--eEEeecCcCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005315 208 FVQWSPLGTYLATVHRQG--AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 284 (702)
Q Consensus 208 ~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~ 284 (702)
+..|.|++..|+...-.+ |.-|+.. ++ ....+.++. +.++..-..+..|+++... +.+++..+
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~-~g-~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g------------~~~~~~~~ 94 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPE-TG-KKRVFPSPGGFSSGALIDAGGRLIACEHG------------VRLLDPDT 94 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCC-cC-ceEEEECCCCcccceeecCCCeEEEEccc------------cEEEeccC
Confidence 456888888777766554 6677776 33 233333333 5555555555566666655 66777766
Q ss_pred CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecC----------CeEEEEecC-CcccccceeeccCCe
Q 005315 285 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGK----------NMISVYETE-SFTLIDKKSLKVENV 353 (702)
Q Consensus 285 g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d----------~~i~v~d~~-~~~~~~~~~~~~~~v 353 (702)
+..+..+....... ....++.....| +|.+.++... ..-.||-+. .+..+.....+...-
T Consensus 95 ~~~~t~~~~~~~~~--------~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 95 GGKITLLAEPEDGL--------PLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred CceeEEeccccCCC--------CcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 66543332221111 011133566777 7776554332 112345444 343332222223445
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecC
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP 387 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~ 387 (702)
+.++||||++.+.+. .....+|+.++..
T Consensus 166 NGla~SpDg~tly~a------DT~~~~i~r~~~d 193 (307)
T COG3386 166 NGLAFSPDGKTLYVA------DTPANRIHRYDLD 193 (307)
T ss_pred CceEECCCCCEEEEE------eCCCCeEEEEecC
Confidence 789999999977762 3334677777765
No 429
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.20 E-value=0.00025 Score=73.54 Aligned_cols=73 Identities=26% Similarity=0.413 Sum_probs=64.6
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
+.|+|+||| .+++..+.+|...++. ....+..|..+|.+|||||.+|-++-....|+..|||.++..+ .+.|.
T Consensus 290 ~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~-~lvvq 364 (500)
T KOG0120|consen 290 NKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK-KLVVQ 364 (500)
T ss_pred chhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc-eeEee
Confidence 569999999 9999999999998887 4677888888999999999999999999999999999999877 44443
No 430
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.0013 Score=63.53 Aligned_cols=125 Identities=10% Similarity=0.163 Sum_probs=88.7
Q ss_pred CCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEcc-CCCEEEEEeccCCCceEEE
Q 005315 453 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP-SGRFIVLAGLKGFNGQLEF 531 (702)
Q Consensus 453 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~dg~v~i 531 (702)
.+.|.++.|...++.+..+...| .|..+|++.+..........-+++..++++..-. ++++|++.+. +|+|.+
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRng---eI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M---~gkikL 325 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNG---EIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDM---TGKIKL 325 (425)
T ss_pred chhHHHHHhcccCCeeEecccCC---cEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccC---cCceeE
Confidence 56788888888888888888888 8999999876332223334444566777766555 6788888887 999999
Q ss_pred EECCCcce---eee--cccCc--eeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeeec
Q 005315 532 YNVDELET---MAT--AEHFM--ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTL 588 (702)
Q Consensus 532 ~d~~~~~~---~~~--~~~~~--i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~~ 588 (702)
||++-.+. +.+ +|... -.-+...+....|++++. |.-.+||.+. |.++...+
T Consensus 326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd-----DcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD-----DCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred eeehhhhcccceeeeecccccccccccccccccceEEEccC-----eeEEEEEecccCceeeccC
Confidence 99985444 333 33322 223455677788888888 9999999998 66666553
No 431
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.12 E-value=0.00091 Score=71.21 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=61.2
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
+++++||++|| .|.+.+|..+|+.+|+ .+|.|. .++|.|||.|..-++|.+|+.+|+.+++.++ ++++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k-~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADK-TIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccce-eeEEe
Confidence 78999999999 9999999999999998 466664 4679999999999999999999999999877 66555
No 432
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.12 Score=56.56 Aligned_cols=225 Identities=11% Similarity=0.104 Sum_probs=120.3
Q ss_pred EEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCC-CeEEEEeecCCCCCCCcEEEEEecCCc---
Q 005315 315 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSK--- 389 (702)
Q Consensus 315 ~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~--- 389 (702)
+|++ .+..+|.++ +|.|.+++-. .+.+........++..+-|.-++ .+|++.+.+. .+++..+.+|++...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~--~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDE--QGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecC--CCCceEEEEecccccCCC
Confidence 7888 888888888 9998887643 22223333333333334444444 4555543322 224434555554322
Q ss_pred ---ceeeeeeec-------ccccceeEEccCCCEEEEEEcccccccccccccEEEEEE---ecCCcceeEEEecCCCCce
Q 005315 390 ---EELRQKNLF-------SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI---KERDIPIEVLELDNKNDKI 456 (702)
Q Consensus 390 ---~~~~~~~~~-------~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~~~~l~~h~~~v 456 (702)
..+..+..+ ......++.+.+-+.++++-.++. +.++.- ++++.. ..-.....++|
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~---------V~~~~GDi~RDrgsr--~~~~~~~~~pI 174 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGL---------VICYKGDILRDRGSR--QDYSHRGKEPI 174 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcE---------EEEEcCcchhccccc--eeeeccCCCCc
Confidence 122111111 122334566777777777776665 233321 122221 11111337899
Q ss_pred eEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 457 IAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 457 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
+.+++..+++.++.+.... .|.+|.+.... . ...+..-.|.+.++-.+++....+++++ ...|.+|+.+.
T Consensus 175 TgL~~~~d~~s~lFv~Tt~---~V~~y~l~gr~-p--~~~~ld~~G~~lnCss~~~~t~qfIca~----~e~l~fY~sd~ 244 (933)
T KOG2114|consen 175 TGLALRSDGKSVLFVATTE---QVMLYSLSGRT-P--SLKVLDNNGISLNCSSFSDGTYQFICAG----SEFLYFYDSDG 244 (933)
T ss_pred eeeEEecCCceeEEEEecc---eeEEEEecCCC-c--ceeeeccCCccceeeecCCCCccEEEec----CceEEEEcCCC
Confidence 9999999888744444333 79999996322 1 1122233355778888887666455555 56899999986
Q ss_pred cceeeecccCceeeeEECCCCCEEEEEE
Q 005315 537 LETMATAEHFMATDVEWDPTGRYVATAV 564 (702)
Q Consensus 537 ~~~~~~~~~~~i~~~~~spdg~~l~t~s 564 (702)
.....+...+.=.-+-|...|.+|+...
T Consensus 245 ~~~cfaf~~g~kk~~~~~~~g~~L~v~~ 272 (933)
T KOG2114|consen 245 RGPCFAFEVGEKKEMLVFSFGLLLCVTT 272 (933)
T ss_pred cceeeeecCCCeEEEEEEecCEEEEEEc
Confidence 5554443322223344554555555443
No 433
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.49 Score=49.59 Aligned_cols=204 Identities=13% Similarity=0.132 Sum_probs=126.0
Q ss_pred eEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCC-CCcEEEEEecCCc
Q 005315 313 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN-QPARVSLVQIPSK 389 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~-~~~~i~~~~~~~~ 389 (702)
.+..++ ++..+.... ++.|.+.|..+.+.......-. ....++++|+++.+.+ +... +...++.++..+.
T Consensus 78 ~i~v~~-~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV-----~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 78 GVAVNP-AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYV-----ANAGNGNNTVSVIDAATN 150 (381)
T ss_pred ceeeCC-CCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEE-----EecccCCceEEEEeCCCC
Confidence 457777 777444444 7999999977665554332221 4678999999988876 2222 5778899998888
Q ss_pred ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeE-E--EecCCCCceeEEEEeeCCc
Q 005315 390 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV-L--ELDNKNDKIIAFAWEPKGH 466 (702)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~--~l~~h~~~v~~~~~sp~g~ 466 (702)
+.+....... ....++++|+|..+++...... .+.+++.. ...+.. . ..-.-......+.++|+|.
T Consensus 151 ~~~~~~~vG~-~P~~~a~~p~g~~vyv~~~~~~--------~v~vi~~~--~~~v~~~~~~~~~~~~~~P~~i~v~~~g~ 219 (381)
T COG3391 151 KVTATIPVGN-TPTGVAVDPDGNKVYVTNSDDN--------TVSVIDTS--GNSVVRGSVGSLVGVGTGPAGIAVDPDGN 219 (381)
T ss_pred eEEEEEecCC-CcceEEECCCCCeEEEEecCCC--------eEEEEeCC--CcceeccccccccccCCCCceEEECCCCC
Confidence 7776633222 3367789999998888763222 13333322 221110 0 0001133455689999999
Q ss_pred EEEEEEcCCCCCeEEEEEeecccCcCceEEEEE-cC-CC-ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee
Q 005315 467 RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LK-GK-QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 542 (702)
Q Consensus 467 ~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~-~~-~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~ 542 (702)
++.+.........+...|..++. .... .. +. ....+..+|+|+++.+.... .+.+.+.|..+..+...
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~------v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~--~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGN------VTATDLPVGSGAPRGVAVDPAGKAAYVANSQ--GGTVSVIDGATDRVVKT 290 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCce------EEEeccccccCCCCceeECCCCCEEEEEecC--CCeEEEEeCCCCceeee
Confidence 87776654321266666665432 2221 11 11 35678999999999988541 58899999887776654
No 434
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.09 E-value=0.00096 Score=63.20 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=63.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
...+||+|+- .++.++++.-|+.-+. ..+.||.|...|.+|||+||+|.+.+.+..|.. |||..+.+. .+.|..
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~-~i~vt~ 176 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP-AIEVTL 176 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccc-cceeee
Confidence 4679999999 8888888887876665 468899999999999999999999999999999 999999877 555544
No 435
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.08 E-value=0.00021 Score=63.93 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=60.2
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
+.+|+|+|+- .|+++.|.+||-..|. ..+.||.+. +++.| ||||+|.++.....|+..+||-++...
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~ 77 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEED 77 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccc
Confidence 5689999999 9999999999997776 468899987 78888 999999999999999999999988755
No 436
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.04 E-value=0.0013 Score=65.02 Aligned_cols=72 Identities=25% Similarity=0.251 Sum_probs=60.1
Q ss_pred CCCCcEEEECCCC-CCChhhHHHhHhccccc-cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 56 SGFGNIIVVDNLP-VVPKEKFEKLEGVIKED-GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 56 ~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~~-~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.+-.|.|+|.||| ..|=..|+.-|..++.+ ...| + +.|+++| .|.|.++++|+.|+..|||.+++++ .++|.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-m--e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr-~I~V~ 606 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-M--ENGKSKG--VVRFFSPEDAERACALMNGSRLDGR-NIKVT 606 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhh-h--ccCCccc--eEEecCHHHHHHHHHHhccCcccCc-eeeee
Confidence 3456889999999 99999999999988773 2333 2 4699999 8999999999999999999999988 66664
No 437
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.03 E-value=0.42 Score=47.62 Aligned_cols=139 Identities=13% Similarity=0.102 Sum_probs=77.1
Q ss_pred CCCcEEEEEeCCceEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeecc
Q 005315 213 PLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK 292 (702)
Q Consensus 213 pdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~ 292 (702)
..|+.|+.|..+|+.+++...............|..+...|+-+.|++-+. +.+.++++.+-.......
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd-----------~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSD-----------GQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEcC-----------CccEEEEchhhccccccc
Confidence 457899999999998888842444444444445999999998887776653 479999986544333111
Q ss_pred ---CCCcccccCCCCCCCCcccceEE---EcCCCCcEEEEecCCeEEEEecCCc--cc-ccceeecc-CCeeEEEeCCCC
Q 005315 293 ---GSADEFAVGGTGGVAGVSWPVFR---WGGGKDKYFAKLGKNMISVYETESF--TL-IDKKSLKV-ENVMDFSWSPTD 362 (702)
Q Consensus 293 ---~~~~~~~~~~~~~~~~~~w~~~~---~s~~dg~~la~~~d~~i~v~d~~~~--~~-~~~~~~~~-~~v~~~~~sp~~ 362 (702)
..........-....++. .++ -.. ...+|+.+....|.+|..... .. ...+.+.. ..+..++|. +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~--~f~~~~~~~-~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~ 148 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVS--FFAVNGGHE-GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--G 148 (275)
T ss_pred cccccccccccccccccCCee--EEeeccccc-cceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--C
Confidence 000000000000011111 222 112 445666666889999887653 11 11122222 457888888 4
Q ss_pred CeEEE
Q 005315 363 PIISL 367 (702)
Q Consensus 363 ~~la~ 367 (702)
+.|++
T Consensus 149 ~~i~v 153 (275)
T PF00780_consen 149 NKICV 153 (275)
T ss_pred CEEEE
Confidence 55555
No 438
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.00 E-value=0.06 Score=51.68 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=83.0
Q ss_pred cceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCccc
Q 005315 235 FNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 311 (702)
Q Consensus 235 ~~~~~~~~~~~---v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w 311 (702)
.+.+.+++|.. ...+.|..+|..+-+.+.. +...|+.+|+.+|+.++....+..... -
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~y--------G~S~l~~~d~~tg~~~~~~~l~~~~Fg-------E---- 93 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLY--------GQSSLRKVDLETGKVLQSVPLPPRYFG-------E---- 93 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECST--------TEEEEEEEETTTSSEEEEEE-TTT--E-------E----
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCC--------CcEEEEEEECCCCcEEEEEECCccccc-------e----
Confidence 34667777775 7889998889888888776 236899999999998877665544331 0
Q ss_pred ceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcce
Q 005315 312 PVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 391 (702)
Q Consensus 312 ~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 391 (702)
-+.... |.-|..+.-++...+||..+.+.+.......++ ..++ .+++.|.. .|++.+++.++..+.+.
T Consensus 94 -Git~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG-WGLt--~dg~~Li~-------SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 94 -GITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG-WGLT--SDGKRLIM-------SDGSSRLYFLDPETFKE 161 (264)
T ss_dssp -EEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEE--ECSSCEEE-------E-SSSEEEEE-TTT-SE
T ss_pred -eEEEEC-CEEEEEEecCCeEEEEccccceEEEEEecCCcc-eEEE--cCCCEEEE-------ECCccceEEECCcccce
Confidence 233334 444555666999999999988877665444332 3444 56777777 78889999988766654
Q ss_pred ee
Q 005315 392 LR 393 (702)
Q Consensus 392 ~~ 393 (702)
.+
T Consensus 162 ~~ 163 (264)
T PF05096_consen 162 VR 163 (264)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 439
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.013 Score=58.86 Aligned_cols=247 Identities=11% Similarity=0.178 Sum_probs=145.5
Q ss_pred ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----cEEeeccCCCcccccCCCCCCCCcccceEEE
Q 005315 241 YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 316 (702)
Q Consensus 241 ~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 316 (702)
+-|..+-.=.|-.-.+++.+++.| |.++.|.- ++ +.+..|..|...+. .++.
T Consensus 6 ymhrd~i~hv~~tka~fiiqASlD----------Gh~KFWkK-s~isGvEfVKhFraHL~~I~-------------sl~~ 61 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAKFIIQASLD----------GHKKFWKK-SRISGVEFVKHFRAHLGVIL-------------SLAV 61 (558)
T ss_pred hcccceeeeEeeehhheEEeeecc----------hhhhhcCC-CCccceeehhhhHHHHHHHH-------------hhhc
Confidence 345554333444567899999999 99999983 33 23444555554432 4566
Q ss_pred cCCCCcEEEEec--CCeEEEEecCCccccccee-eccCCeeEEEeCCCCC--eEEEEeecCCCCCCCcEEEEEecCCcce
Q 005315 317 GGGKDKYFAKLG--KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDP--IISLFVPELGGGNQPARVSLVQIPSKEE 391 (702)
Q Consensus 317 s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~sp~~~--~la~~~~~~~~~~~~~~i~~~~~~~~~~ 391 (702)
|. ++..+++.. |..++++|+.+..++.-.. .-.++..+...+|... .|++ +.-....+.+++.
T Consensus 62 S~-dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAV------s~~~sg~i~VvD~----- 129 (558)
T KOG0882|consen 62 SY-DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAV------SLFKSGKIFVVDG----- 129 (558)
T ss_pred cc-cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEe------ecccCCCcEEECC-----
Confidence 77 898888866 8999999988766553221 1223333333333322 1221 1111122222221
Q ss_pred eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEE
Q 005315 392 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 471 (702)
Q Consensus 392 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~ 471 (702)
.....+.. ..-.-|..+|..+.++|.++.+++.
T Consensus 130 ----------------------------------------------~~d~~q~~-~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 130 ----------------------------------------------FGDFCQDG-YFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred ----------------------------------------------cCCcCccc-eecccccCceEEEEeeccccceeec
Confidence 11111100 0111357888888888888888877
Q ss_pred EcCCCCCeEEEEEeecc----cCcCce--EE---EEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCccee
Q 005315 472 HGDSPRPDISFYSMRTA----QHAGRV--SK---LTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 540 (702)
Q Consensus 472 ~~d~~~~~v~i~d~~~~----~~~~~~--~~---~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~ 540 (702)
...| .|.-|..... .....+ +. +..+. .....++.|||+|..+.+.+. |..|+++.+.+++++
T Consensus 163 D~~g---mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~---DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 163 DISG---MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP---DRKVRGFVFKTGKLV 236 (558)
T ss_pred cccc---eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc---ccEEEEEEeccchhh
Confidence 6666 7888887521 000000 00 11111 113578999999999998887 999999999875543
Q ss_pred ee-----------------------------------cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc
Q 005315 541 AT-----------------------------------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 541 ~~-----------------------------------~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
.. .....-+.+.|+-.|++|+.++- -+|++.++...
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~------~gikvin~~tn 307 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI------LGIKVINLDTN 307 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc------eeEEEEEeecC
Confidence 21 01122356889999999999988 57888887644
No 440
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.71 Score=46.35 Aligned_cols=228 Identities=14% Similarity=0.068 Sum_probs=115.1
Q ss_pred EEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEE-EeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc-
Q 005315 314 FRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDF-SWSPTDPIISLFVPELGGGNQPARVSLVQIPSK- 389 (702)
Q Consensus 314 ~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~-~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~- 389 (702)
..|.+ +...|..+. .+.|.-|+..+++... . .....+.++ .....+.++++ ..+. .++..+....
T Consensus 30 P~w~~-~~~~L~w~DI~~~~i~r~~~~~g~~~~-~-~~p~~~~~~~~~d~~g~Lv~~-------~~g~-~~~~~~~~~~~ 98 (307)
T COG3386 30 PVWDP-DRGALLWVDILGGRIHRLDPETGKKRV-F-PSPGGFSSGALIDAGGRLIAC-------EHGV-RLLDPDTGGKI 98 (307)
T ss_pred ccCcC-CCCEEEEEeCCCCeEEEecCCcCceEE-E-ECCCCcccceeecCCCeEEEE-------cccc-EEEeccCCcee
Confidence 46778 777666665 7888888887553221 1 111223333 33344444443 2221 1111111111
Q ss_pred ceee----eeeecccccceeEEccCCCEEEEEEc---ccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEe
Q 005315 390 EELR----QKNLFSVSDCKMYWQSSGDYLAVKVD---RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 462 (702)
Q Consensus 390 ~~~~----~~~~~~~~~~~~~~s~~g~~l~~~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 462 (702)
..+. .......++. ...|+|.+-+.... .... ... ... .+|+++..+... ..+..+-...+.++||
T Consensus 99 t~~~~~~~~~~~~r~ND~--~v~pdG~~wfgt~~~~~~~~~-~~~-~~G-~lyr~~p~g~~~--~l~~~~~~~~NGla~S 171 (307)
T COG3386 99 TLLAEPEDGLPLNRPNDG--VVDPDGRIWFGDMGYFDLGKS-EER-PTG-SLYRVDPDGGVV--RLLDDDLTIPNGLAFS 171 (307)
T ss_pred EEeccccCCCCcCCCCce--eEcCCCCEEEeCCCccccCcc-ccC-Ccc-eEEEEcCCCCEE--EeecCcEEecCceEEC
Confidence 1111 0111111222 34778876655433 1110 001 111 688887433221 1222233455679999
Q ss_pred eCCcEEEEEEcCCCCCeEEEEEeec--ccCcCc-eEEEEEcCCCceeEEEEccCCCEEEEEeccCCCc-eEEEEECCCcc
Q 005315 463 PKGHRFAVIHGDSPRPDISFYSMRT--AQHAGR-VSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNG-QLEFYNVDELE 538 (702)
Q Consensus 463 p~g~~l~~~~~d~~~~~v~i~d~~~--~~~~~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg-~v~i~d~~~~~ 538 (702)
||++.|+++-... +.|.-|++.. +....+ .........+..-.++...+|.+.+++.. +| .|..|+.+ ++
T Consensus 172 pDg~tly~aDT~~--~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~~~pd-G~ 245 (307)
T COG3386 172 PDGKTLYVADTPA--NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVRFNPD-GK 245 (307)
T ss_pred CCCCEEEEEeCCC--CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEEECCC-Cc
Confidence 9999888876543 2677777652 111111 11111222234456778888888765544 43 89999999 77
Q ss_pred eeee--cccCceeeeEE-CCCCCEEEEEEe
Q 005315 539 TMAT--AEHFMATDVEW-DPTGRYVATAVT 565 (702)
Q Consensus 539 ~~~~--~~~~~i~~~~~-spdg~~l~t~s~ 565 (702)
++.. .....+++++| .|+.+.|...+.
T Consensus 246 l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 246 LLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 7665 33366777777 456666665555
No 441
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0077 Score=63.17 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=66.1
Q ss_pred cccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCC--ee-EEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005315 204 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ--VK-LIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 279 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~--v~-~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v 279 (702)
-.+..+.|+|.-..||++...| +.+.... ++++-.++.++ ++ +++|.|||+.||.|-.| |+|++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd----------G~I~L 88 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD----------GTIRL 88 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecC----------CeEEE
Confidence 3567889999999999999999 8788776 88888887443 66 99999999999999999 99999
Q ss_pred EEccCCcEEeec
Q 005315 280 FDVRTGKVMRDF 291 (702)
Q Consensus 280 wd~~~g~~~~~~ 291 (702)
-|+.+|..+..+
T Consensus 89 ~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 89 HDVEKGGRLVSF 100 (665)
T ss_pred EEccCCCceecc
Confidence 999999888774
No 442
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.65 E-value=0.6 Score=44.98 Aligned_cols=180 Identities=14% Similarity=0.110 Sum_probs=108.7
Q ss_pred cceEEECCCCcEEEEEeCCc---eEEeecCcCcceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005315 206 ESFVQWSPLGTYLATVHRQG---AAVWGGANTFNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 279 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~~~~---i~iw~~~~~~~~~~~~~~~~---v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v 279 (702)
--.+.|..+|.++-+.+..| ++.++.. +++.+.+...+. --.++...|.=|.+|.-. +...+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~-tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-----------~~~f~ 114 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLE-TGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-----------GTGFV 114 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETT-TSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-----------SEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECC-CCcEEEEEECCccccceeEEEECCEEEEEEecC-----------CeEEE
Confidence 34678878899888888776 7899999 777666655443 445666555555666544 58899
Q ss_pred EEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeecc-----CCe
Q 005315 280 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENV 353 (702)
Q Consensus 280 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~-----~~v 353 (702)
||..+-+.+.++...... | -++ . |++.|..+. +..|.++|..+++......... ..+
T Consensus 115 yd~~tl~~~~~~~y~~EG-------------W-GLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 115 YDPNTLKKIGTFPYPGEG-------------W-GLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EETTTTEEEEEEE-SSS----------------EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EccccceEEEEEecCCcc-------------e-EEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 999999999988765432 5 344 4 666555554 8999999998887665544432 246
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecc--------------ccc-ceeEEccCCCEEEEEE
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS--------------VSD-CKMYWQSSGDYLAVKV 418 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~s~~g~~l~~~~ 418 (702)
+.+.|- +|.+.|= -=.+-.|..++..+++......+.. ... ..++|.|.+..|.+..
T Consensus 178 NELE~i-~G~IyAN-------VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 178 NELEYI-NGKIYAN-------VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEE-TTEEEEE-------ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeEEEE-cCEEEEE-------eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 677775 4444332 2234456677777766544332210 111 2368888888888776
Q ss_pred cccc
Q 005315 419 DRYT 422 (702)
Q Consensus 419 ~~~~ 422 (702)
..-.
T Consensus 250 K~Wp 253 (264)
T PF05096_consen 250 KLWP 253 (264)
T ss_dssp TT-S
T ss_pred CCCC
Confidence 6544
No 443
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=96.64 E-value=0.0014 Score=64.66 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=51.3
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHH
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELA 115 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a 115 (702)
-++.++|++|+ .++++.|+.-|..+++ .++.++.|+.+++++||+||+|.++..-..+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~v 64 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAV 64 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchhee
Confidence 47899999999 9999999999999888 5899999999999999999999987544433
No 444
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.63 E-value=0.78 Score=44.92 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=87.3
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 431 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 431 (702)
.+.+.++|+++..+++.. ..+....++............ .........|+++|....+......
T Consensus 25 ~~~s~AvS~dg~~~A~v~----~~~~~~~L~~~~~~~~~~~~~---~g~~l~~PS~d~~g~~W~v~~~~~~--------- 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVS----EGDGGRSLYVGPAGGPVRPVL---TGGSLTRPSWDPDGWVWTVDDGSGG--------- 88 (253)
T ss_pred cccceEECCCCCeEEEEE----EcCCCCEEEEEcCCCcceeec---cCCccccccccCCCCEEEEEcCCCc---------
Confidence 478899999999888753 134555666655432211110 1123344579999776666543332
Q ss_pred EEEEEE-ecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc-cC-cCce-EEEEEcC--CCce
Q 005315 432 FELFRI-KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA-QH-AGRV-SKLTTLK--GKQA 505 (702)
Q Consensus 432 ~~l~~l-~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~-~~-~~~~-~~~~~~~--~~~v 505 (702)
..++.. .........+....-...|.+|.+||||.++|+...++....|.+--+... .+ .... ..+.... ...+
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v 168 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDV 168 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcc
Confidence 233321 111111111222111238999999999999999985433347888776532 22 1111 1111111 3468
Q ss_pred eEEEEccCCCEEEEEec
Q 005315 506 NALFWSPSGRFIVLAGL 522 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~ 522 (702)
..+.|.+++.+++.+..
T Consensus 169 ~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 169 TDVAWSDDSTLVVLGRS 185 (253)
T ss_pred eeeeecCCCEEEEEeCC
Confidence 89999999998887765
No 445
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.59 E-value=0.0012 Score=68.92 Aligned_cols=183 Identities=14% Similarity=0.205 Sum_probs=105.5
Q ss_pred CceEEEEeCCceEEEecCCCCCCC-cccccCCCcccceEEECC-CCcEEEEEeCC-----ceEEeecCcCcc--ee--ee
Q 005315 172 RDQFVIRSGTDTEVLWNDARHLKP-EPVYKRSYWTESFVQWSP-LGTYLATVHRQ-----GAAVWGGANTFN--RL--MR 240 (702)
Q Consensus 172 ~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~-----~i~iw~~~~~~~--~~--~~ 240 (702)
+...+++..++.+.+-+...+... --..++|...+++++|++ |...||.|... .+.|||.. +.- +. ..
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~-s~ltvPke~~~ 148 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN-SLLTVPKESPL 148 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc-cccCCCccccc
Confidence 334445555555555544222222 234578888999999998 45677777532 27899988 441 11 11
Q ss_pred e---cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-cEEeeccCCCcccccCCCCCCCCcccceEEE
Q 005315 241 Y---AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 316 (702)
Q Consensus 241 ~---~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 316 (702)
| ...+..+++|-.+.+.+++|... ..+.++|++.. .....+... .+.|+. .=-|
T Consensus 149 fs~~~l~gqns~cwlrd~klvlaGm~s----------r~~~ifdlRqs~~~~~svnTk----------~vqG~t--Vdp~ 206 (783)
T KOG1008|consen 149 FSSSTLDGQNSVCWLRDTKLVLAGMTS----------RSVHIFDLRQSLDSVSSVNTK----------YVQGIT--VDPF 206 (783)
T ss_pred cccccccCccccccccCcchhhccccc----------chhhhhhhhhhhhhhhhhhhh----------hcccce--ecCC
Confidence 1 12347788898888999998887 78999998622 111122110 112221 1134
Q ss_pred cCCCCcEEEEecCCeEEEEecC-Ccc-cc----cceeeccCCeeEEEeCCCCCe-EEEEeecCCCCCCCcEEEEEec
Q 005315 317 GGGKDKYFAKLGKNMISVYETE-SFT-LI----DKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLVQI 386 (702)
Q Consensus 317 s~~dg~~la~~~d~~i~v~d~~-~~~-~~----~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~~~ 386 (702)
++ .|+++..++.|.+||.. ..+ .+ .........+..++|+|...- +++ .......|.+|++
T Consensus 207 ~~---nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~------l~RdS~tIrlydi 274 (783)
T KOG1008|consen 207 SP---NYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAV------LSRDSITIRLYDI 274 (783)
T ss_pred CC---CceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhh------hccCcceEEEecc
Confidence 44 78988889999999943 221 11 111112234889999997543 333 1444556666665
No 446
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.56 E-value=0.0091 Score=57.78 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=63.5
Q ss_pred CCCCcEEEECCCC-CCChhhHHHhHhccc---------cccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccC
Q 005315 56 SGFGNIIVVDNLP-VVPKEKFEKLEGVIK---------EDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 125 (702)
Q Consensus 56 ~~~~~~~~v~~lp-~~~~~~~~~l~~~~~---------~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 125 (702)
....+.|||.||| .+|-+.+..+|+..| +..+.+=.|. .|+.||=|.+.|...+....|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3455779999999 999999999999432 2345555554 5889999999999999999999999999998
Q ss_pred CeeEEEEEecc
Q 005315 126 RAHIFAVNMFD 136 (702)
Q Consensus 126 ~~h~~~v~~~~ 136 (702)
+. .++|.+..
T Consensus 210 g~-~~rVerAk 219 (382)
T KOG1548|consen 210 GK-KLRVERAK 219 (382)
T ss_pred Cc-EEEEehhh
Confidence 65 88887543
No 447
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=0.0024 Score=65.83 Aligned_cols=63 Identities=27% Similarity=0.340 Sum_probs=56.3
Q ss_pred cEEEECCCC-CCChhhHHHhHhccccc-cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKED-GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~~-~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
-.++|-||| .|+.+.|.++|+++|+. + +++|-.++|.+||+|-+.-+|+.|++.||+.++.++
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~yGeir~-----ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAYGEIRE-----IRETPNKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhhcchhh-----hhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 479999999 99999999999999983 3 234778899999999999999999999999998766
No 448
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.45 E-value=0.37 Score=47.15 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=93.3
Q ss_pred cceeEEccCCCEEEEEE--cccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCe
Q 005315 402 DCKMYWQSSGDYLAVKV--DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD 479 (702)
Q Consensus 402 ~~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~ 479 (702)
....+++++|+.+++.. .+. ..||.....+...... . ...+...+|+++|...++...+. .
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~----------~~L~~~~~~~~~~~~~--~--g~~l~~PS~d~~g~~W~v~~~~~---~ 88 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGG----------RSLYVGPAGGPVRPVL--T--GGSLTRPSWDPDGWVWTVDDGSG---G 88 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCC----------CEEEEEcCCCcceeec--c--CCccccccccCCCCEEEEEcCCC---c
Confidence 34457899999888876 332 2556555433322111 1 34778889999987766666544 4
Q ss_pred EEEEE-eecccCcCceEEEEEcCCC-ceeEEEEccCCCEEEEEeccCCCceEEEEECC---Cc--ceee------ecccC
Q 005315 480 ISFYS-MRTAQHAGRVSKLTTLKGK-QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD---EL--ETMA------TAEHF 546 (702)
Q Consensus 480 v~i~d-~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~---~~--~~~~------~~~~~ 546 (702)
..++. ...+... ...+...... .|..+.+||||..+++......++.|.+--+. .+ ..+. .....
T Consensus 89 ~~~~~~~~~g~~~--~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 89 VRVVRDSASGTGE--PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred eEEEEecCCCcce--eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence 45553 2222211 1122222222 79999999999999887743336778776553 22 1111 12245
Q ss_pred ceeeeEECCCCCEEEEEEeecccccccEEE-EEeccc
Q 005315 547 MATDVEWDPTGRYVATAVTSVHEMENGFNI-WSFNGK 582 (702)
Q Consensus 547 ~i~~~~~spdg~~l~t~s~~~~~~d~~v~i-w~~~g~ 582 (702)
.++++.|.+++..++.+... +..+.. ....|.
T Consensus 167 ~v~~v~W~~~~~L~V~~~~~----~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVVLGRSA----GGPVVRLVSVDGG 199 (253)
T ss_pred cceeeeecCCCEEEEEeCCC----CCceeEEEEccCC
Confidence 78899999999977777653 343443 555554
No 449
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.42 E-value=0.089 Score=55.31 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=73.3
Q ss_pred eccCCeeEEEeCCCC-----CeEEEEeecCCCCCCCcEEEEEecCC---cceeeeee-----ecccccceeEEccCCCEE
Q 005315 348 LKVENVMDFSWSPTD-----PIISLFVPELGGGNQPARVSLVQIPS---KEELRQKN-----LFSVSDCKMYWQSSGDYL 414 (702)
Q Consensus 348 ~~~~~v~~~~~sp~~-----~~la~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~-----~~~~~~~~~~~s~~g~~l 414 (702)
.+.+.|.+++|+|-+ .+||+. ....+.||.+.... .+.+.... .+.+-.....|+|....|
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQ------HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL 127 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQ------HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAIL 127 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEe------ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceE
Confidence 455679999999963 356652 34445556554322 22222111 123333345799999999
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEee
Q 005315 415 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 486 (702)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 486 (702)
++.+.+.. -.++.++-.+..+. ..+ ...+.|++.+|.+||++|+++.+..- .-+|||-.
T Consensus 128 ~VLT~~dv---------SV~~sV~~d~srVk-aDi-~~~G~IhCACWT~DG~RLVVAvGSsL--HSyiWd~~ 186 (671)
T PF15390_consen 128 TVLTARDV---------SVLPSVHCDSSRVK-ADI-KTSGLIHCACWTKDGQRLVVAVGSSL--HSYIWDSA 186 (671)
T ss_pred EEEecCce---------eEeeeeeeCCceEE-Eec-cCCceEEEEEecCcCCEEEEEeCCeE--EEEEecCc
Confidence 99877654 24555554443321 233 33789999999999999999887532 45677643
No 450
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.42 E-value=1.4 Score=45.43 Aligned_cols=238 Identities=12% Similarity=0.142 Sum_probs=105.3
Q ss_pred CCcEEEEec--CCeEEEEecCCcccccce--ee-----c----cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEec
Q 005315 320 KDKYFAKLG--KNMISVYETESFTLIDKK--SL-----K----VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 386 (702)
Q Consensus 320 dg~~la~~~--d~~i~v~d~~~~~~~~~~--~~-----~----~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 386 (702)
+.++|+..+ ++.|+|.|+.+.-...+. .+ . ...-..+..-|+|.++++..... .+++.+.+.+++.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~-~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDA-DGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEET-TS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCC-CCCCCCcEEEEcC
Confidence 456777776 899999998743211111 01 1 11234456678887777654332 2477778888888
Q ss_pred CCcceeeeeeec---ccccceeEEccCCCEEEEEEcccc-----------cccccccccEEEEEEecCCcceeEEEecCC
Q 005315 387 PSKEELRQKNLF---SVSDCKMYWQSSGDYLAVKVDRYT-----------KTKKSTYTGFELFRIKERDIPIEVLELDNK 452 (702)
Q Consensus 387 ~~~~~~~~~~~~---~~~~~~~~~s~~g~~l~~~~~~~~-----------~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h 452 (702)
.+.+........ ......+-|+|.-+.+++..-... .....+...+.+|++.... ....+.+...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~~Q~idLg~~ 243 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-LLQTIDLGEE 243 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-EEEEEES-TT
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-EeeEEecCCC
Confidence 876654433221 112234567888777777543211 0111234568999987653 3344555322
Q ss_pred CCceeEEEE--eeCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcCCC-------------------ceeEEEE
Q 005315 453 NDKIIAFAW--EPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGK-------------------QANALFW 510 (702)
Q Consensus 453 ~~~v~~~~~--sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------------------~v~~~~~ 510 (702)
..-+..+.| .|+..+=.+++. .+ +|..|--.. .+....+.+.+++.. -++.|..
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss---~i~~~~k~~-~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSS---SIWRFYKDD-DGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--E---EEEEEEE-E-TTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred CCceEEEEecCCCCccceEEEEeccc---eEEEEEEcC-CCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 223444444 454444333333 33 444443321 222333344444321 2588999
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCC---cceeee---------cc---------cCceeeeEECCCCCEEEEEEe
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDE---LETMAT---------AE---------HFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~---~~~~~~---------~~---------~~~i~~~~~spdg~~l~t~s~ 565 (702)
|.|.++|.+++. ..|.|+.||+.. -+++.+ .. .+...-+..|.||+.|...++
T Consensus 320 SlDDrfLYvs~W--~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 320 SLDDRFLYVSNW--LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -TTS-EEEEEET--TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred ccCCCEEEEEcc--cCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 999999999987 489999999984 222221 00 122356889999999887766
No 451
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.013 Score=61.45 Aligned_cols=90 Identities=18% Similarity=0.379 Sum_probs=70.6
Q ss_pred CCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCcee-EEEEccCCCEEEEEeccCCCceE
Q 005315 453 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQAN-ALFWSPSGRFIVLAGLKGFNGQL 529 (702)
Q Consensus 453 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~-~~~~spdg~~l~~~~~~~~dg~v 529 (702)
...+.-+.|+|.-..||++..+| .|-++.+.- ..+-+++ +..++ +++|.|||+.|++|-. ||+|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~g---elli~R~n~-------qRlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG~I 86 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKG---ELLIHRLNW-------QRLWTIPIPGENVTASLCWRPDGKLLAVGFK---DGTI 86 (665)
T ss_pred ccceEEEEEcCccchhheeccCC---cEEEEEecc-------ceeEeccCCCCccceeeeecCCCCEEEEEec---CCeE
Confidence 45677789999999999999988 888888741 1455554 44566 9999999999999998 9999
Q ss_pred EEEECCCcceeee---cccCceeeeEECC
Q 005315 530 EFYNVDELETMAT---AEHFMATDVEWDP 555 (702)
Q Consensus 530 ~i~d~~~~~~~~~---~~~~~i~~~~~sp 555 (702)
++.|+.++..+.. .-...|+.+.|+|
T Consensus 87 ~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 87 RLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEEccCCCceeccccccccchheeeccc
Confidence 9999998877765 2235677777763
No 452
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.35 E-value=1.5 Score=45.13 Aligned_cols=236 Identities=12% Similarity=0.138 Sum_probs=102.9
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----cEEeeccCCCcccccCCCCCCCCcccc-eEEEcCCCCcEEEEec
Q 005315 254 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGKDKYFAKLG 328 (702)
Q Consensus 254 dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~s~~dg~~la~~~ 328 (702)
+.+||+..+-.+ +.|+|.|+.+. ++.+.+....-.. ..++..| .+.--| +|.+++++-
T Consensus 86 ~Rr~Li~PgL~S---------srIyviD~~~dPr~P~l~KvIe~~ev~~-------k~g~s~PHT~Hclp-~G~imIS~l 148 (461)
T PF05694_consen 86 ERRYLILPGLRS---------SRIYVIDTKTDPRKPRLHKVIEPEEVFE-------KTGLSRPHTVHCLP-DGRIMISAL 148 (461)
T ss_dssp -S-EEEEEBTTT-----------EEEEE--S-TTS-EEEEEE-HHHHHH-------HH-EEEEEEEEE-S-S--EEEEEE
T ss_pred cCCcEEeeeecc---------CcEEEEECCCCCCCCceEeeeCHHHHHh-------hcCCCCCceeeecC-CccEEEEec
Confidence 457888877542 78999998643 3333332200000 0011111 223346 887766653
Q ss_pred -------CCeEEEEecCCcccccceeec---cCCeeEEEeCCCCCeEEEEeec------CCC-------CCCCcEEEEEe
Q 005315 329 -------KNMISVYETESFTLIDKKSLK---VENVMDFSWSPTDPIISLFVPE------LGG-------GNQPARVSLVQ 385 (702)
Q Consensus 329 -------d~~i~v~d~~~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~------~~~-------~~~~~~i~~~~ 385 (702)
.|.+.++|-.++.+...-... ..--.++-|.|..+.+++..-. .|- ..---++.+|+
T Consensus 149 Gd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD 228 (461)
T PF05694_consen 149 GDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWD 228 (461)
T ss_dssp EETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEE
T ss_pred cCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEE
Confidence 256888888877665433221 1124678889988877762100 000 00113688889
Q ss_pred cCCcceeeeeeecccc----cceeEEccCCCEEEEEEcccccccccccccEEEEEEec--CC-c-ceeEEEecCC-----
Q 005315 386 IPSKEELRQKNLFSVS----DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE--RD-I-PIEVLELDNK----- 452 (702)
Q Consensus 386 ~~~~~~~~~~~~~~~~----~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~--~~-~-~~~~~~l~~h----- 452 (702)
...++.+....+.... .+++.+.|+..+-.+++.-.. .+|.+-. .+ - ....+.+++.
T Consensus 229 ~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss----------~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 229 WSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSS----------SIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp TTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--E----------EEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred CCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccc----------eEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 9888888777765322 345566777776555443211 2332221 11 1 1112223211
Q ss_pred ------------CCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcC-CC---------------
Q 005315 453 ------------NDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK-GK--------------- 503 (702)
Q Consensus 453 ------------~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~--------------- 503 (702)
..-|+++.+|.|.++|.+..- .| .|+.||+...... +++..+. ++
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~G---dvrqYDISDP~~P---kl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHG---DVRQYDISDPFNP---KLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTT---EEEEEE-SSTTS----EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCC---cEEEEecCCCCCC---cEEeEEEECcEeccCCCcccccccc
Confidence 244788999999999988876 56 9999999764432 2333221 11
Q ss_pred --ceeEEEEccCCCEEEEEec
Q 005315 504 --QANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 504 --~v~~~~~spdg~~l~~~~~ 522 (702)
...-+..|-||+.|++.+.
T Consensus 373 ~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -S----EEE-TTSSEEEEE--
T ss_pred CCCCCeEEEccCCeEEEEEee
Confidence 1255889999999988753
No 453
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=96.27 E-value=0.0052 Score=57.84 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=58.5
Q ss_pred CCCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 56 SGFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 56 ~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
...++.+.|+|+. ..+..+++.+|..++. +.. ..-|+|+||-|.-.++|..|++.|||..|+++ ++.|-
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviec--------divkdy~fvh~d~~eda~~air~l~~~~~~gk-~m~vq 145 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIEC--------DIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGK-RMHVQ 145 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceee--------eeecceeEEEEeeccchHHHHhcccccccccc-eeeee
Confidence 3467899999999 9999999999998875 222 34467999999999999999999999999988 66654
Q ss_pred e
Q 005315 134 M 134 (702)
Q Consensus 134 ~ 134 (702)
.
T Consensus 146 ~ 146 (346)
T KOG0109|consen 146 L 146 (346)
T ss_pred e
Confidence 3
No 454
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=96.26 E-value=0.0029 Score=62.42 Aligned_cols=58 Identities=17% Similarity=0.321 Sum_probs=51.1
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHH
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELA 115 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a 115 (702)
....|+|++|| .+++++++.-|.+++. ..+.+++|.++++.+||+||.|.+.+....+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 45689999999 9999999999999886 5788999999999999999999997655544
No 455
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.25 E-value=1.4 Score=43.77 Aligned_cols=233 Identities=12% Similarity=0.131 Sum_probs=117.5
Q ss_pred CCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCe
Q 005315 253 PGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM 331 (702)
Q Consensus 253 pdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~ 331 (702)
..++.|+.|..+ | |.++++.. ....+...... +. .+...+ +-+.++..+|+.
T Consensus 5 ~~~~~L~vGt~~----------G-l~~~~~~~~~~~~~i~~~~~--I~-------------ql~vl~-~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTED----------G-LYVYDLSDPSKPTRILKLSS--IT-------------QLSVLP-ELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECC----------C-EEEEEecCCccceeEeecce--EE-------------EEEEec-ccCEEEEEcCCc
Confidence 357889999887 7 88999832 23222222211 21 466677 778888888999
Q ss_pred EEEEecCCcccccce--------------eeccCCeeEEE---eCCCCCeEEEEeecCCCCCCCcEEEEEecCCc---ce
Q 005315 332 ISVYETESFTLIDKK--------------SLKVENVMDFS---WSPTDPIISLFVPELGGGNQPARVSLVQIPSK---EE 391 (702)
Q Consensus 332 i~v~d~~~~~~~~~~--------------~~~~~~v~~~~---~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~---~~ 391 (702)
+.+|++......... .....++..++ -...+..|++. ....+.++.|..+.. +.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va------~kk~i~i~~~~~~~~~f~~~ 131 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA------VKKKILIYEWNDPRNSFSKL 131 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE------ECCEEEEEEEECCcccccce
Confidence 999998865544311 11223455555 22223445442 333556666665422 23
Q ss_pred eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC----------CCCceeEEEE
Q 005315 392 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN----------KNDKIIAFAW 461 (702)
Q Consensus 392 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~----------h~~~v~~~~~ 461 (702)
++... .......+.|. ++.++++..++ +.+.++..... ........ ...++..+..
T Consensus 132 ~ke~~-lp~~~~~i~~~--~~~i~v~~~~~----------f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (275)
T PF00780_consen 132 LKEIS-LPDPPSSIAFL--GNKICVGTSKG----------FYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL 197 (275)
T ss_pred eEEEE-cCCCcEEEEEe--CCEEEEEeCCc----------eEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe
Confidence 33322 23344456676 67777776543 35555553211 11111100 0122333333
Q ss_pred eeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee
Q 005315 462 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 541 (702)
Q Consensus 462 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~ 541 (702)
+++.+|++ ..+ .-.+.+.. |... + ...-.... ...++++ ...||+... ++.|.||++.+++++.
T Consensus 198 -~~~e~Ll~-~~~----~g~fv~~~-G~~~-r-~~~i~W~~-~p~~~~~--~~pyli~~~----~~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 198 -SDNEFLLC-YDN----IGVFVNKN-GEPS-R-KSTIQWSS-APQSVAY--SSPYLIAFS----SNSIEVRSLETGELVQ 261 (275)
T ss_pred -CCceEEEE-ecc----eEEEEcCC-CCcC-c-ccEEEcCC-chhEEEE--ECCEEEEEC----CCEEEEEECcCCcEEE
Confidence 23444443 321 22333332 2211 0 11122222 3344444 234777766 4669999999998887
Q ss_pred ecccCce
Q 005315 542 TAEHFMA 548 (702)
Q Consensus 542 ~~~~~~i 548 (702)
+.....+
T Consensus 262 ~i~~~~~ 268 (275)
T PF00780_consen 262 TIPLPNI 268 (275)
T ss_pred EEECCCE
Confidence 6555444
No 456
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.061 Score=60.23 Aligned_cols=102 Identities=9% Similarity=0.135 Sum_probs=68.6
Q ss_pred CCcEEEEEeCCc-eEEeecCcCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEee
Q 005315 214 LGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 290 (702)
Q Consensus 214 dg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~ 290 (702)
.+..+|.|+..| +...|..++.....+-. ..+|++++|+.+|+.++.|-.+ |.|.+||+..++.++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~----------G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGD----------GHVTVWDMHRAKILKV 167 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCC----------CcEEEEEccCCcceee
Confidence 466788888777 77777764333322222 2249999999999999999999 9999999999999888
Q ss_pred ccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecC
Q 005315 291 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE 338 (702)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~ 338 (702)
+..+..+. .++- .+.|.. ++..+.++. .|. +|.+.
T Consensus 168 i~e~~ap~--------t~vi--~v~~t~-~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 168 ITEHGAPV--------TGVI--FVGRTS-QNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eeecCCcc--------ceEE--EEEEeC-CCcEEEEccCCCc--eEEEE
Confidence 87665543 2221 345555 555455444 343 56543
No 457
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=0.31 Score=47.01 Aligned_cols=152 Identities=15% Similarity=0.189 Sum_probs=94.5
Q ss_pred cCCCcccceEEECCCCcEEEEEeCCceE-EeecCcCcceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005315 200 KRSYWTESFVQWSPLGTYLATVHRQGAA-VWGGANTFNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRV 275 (702)
Q Consensus 200 ~~~~~~v~~v~~Spdg~~lat~~~~~i~-iw~~~~~~~~~~~~~~~~---v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~ 275 (702)
.+-...++++.|+|+.+.|.+.....-. ||=.. .+..+.+.+..+ .-.|.+.-+|+|.++-..+ +
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~----------~ 150 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERD----------R 150 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEec-CCceEEEecccccCChhHeEEecCCEEEEEehhc----------c
Confidence 3444569999999999998888877744 55444 788888887654 5678899999999988888 8
Q ss_pred EEEEEEccCCcEEeeccCCCcccccCCCCC-CCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc-ccc--------
Q 005315 276 VINIFDVRTGKVMRDFKGSADEFAVGGTGG-VAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LID-------- 344 (702)
Q Consensus 276 ~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~-~~~-------- 344 (702)
.+.++.+..+..+..+... .+..+.... -.|+. -++|.| .++.|..+- .+-+.||...... .+.
T Consensus 151 ~l~~~~vd~~t~~~~~~~~--~i~L~~~~k~N~GfE--GlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQ--KIPLGTTNKKNKGFE--GLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred eEEEEEEcCCccEEeccce--EEeccccCCCCcCce--eeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence 8888888666433333221 111111111 23333 679999 766666665 6667776655221 110
Q ss_pred -ceeeccCCeeEEEeCCCCCeEEE
Q 005315 345 -KKSLKVENVMDFSWSPTDPIISL 367 (702)
Q Consensus 345 -~~~~~~~~v~~~~~sp~~~~la~ 367 (702)
...+....|.++.|.+....|.+
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred cccceEeeccccceecCCCCcEEE
Confidence 01122334677788876555444
No 458
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.15 E-value=0.0066 Score=38.71 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=30.2
Q ss_pred CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEee
Q 005315 195 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWG 230 (702)
Q Consensus 195 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~ 230 (702)
+...+..|...+.+++|+|++.++++++.++ +.+|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3445567788999999999999999999998 78885
No 459
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.63 Score=47.45 Aligned_cols=138 Identities=14% Similarity=0.142 Sum_probs=87.3
Q ss_pred cccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceee
Q 005315 161 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 239 (702)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 239 (702)
.+...++|...+..|++++|.-+.+.-..+....|+..--...+.+.++.||+|.+.||.--.+. |.+.+.. ..+...
T Consensus 24 esngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~-~d~~~l 102 (657)
T KOG2377|consen 24 ESNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI-PDNSQL 102 (657)
T ss_pred cccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecC-CCchhh
Confidence 34456677777778888888766655444444444444445567999999999999999998887 7787764 222222
Q ss_pred ee------cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-cEEeeccCCCcccccCCCCCCCCcccc
Q 005315 240 RY------AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWP 312 (702)
Q Consensus 240 ~~------~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~w~ 312 (702)
.. ....|....|+.+ .-+|..+.. | +-+|-+... +.+|..+.+... +.|-
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~----------G-~e~y~v~pekrslRlVks~~~n-----------vnWy 159 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSS-TEIAFITDQ----------G-IEFYQVLPEKRSLRLVKSHNLN-----------VNWY 159 (657)
T ss_pred HHHHHhccCcceeEEEEEecC-eeEEEEecC----------C-eEEEEEchhhhhhhhhhhcccC-----------ccEE
Confidence 22 2234889999877 555555544 3 567765433 234545444433 3374
Q ss_pred eEEEcCCCCcEEE
Q 005315 313 VFRWGGGKDKYFA 325 (702)
Q Consensus 313 ~~~~s~~dg~~la 325 (702)
.|.+ +.+.+.
T Consensus 160 --~yc~-et~v~L 169 (657)
T KOG2377|consen 160 --MYCP-ETAVIL 169 (657)
T ss_pred --EEcc-ccceEe
Confidence 8888 776543
No 460
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.10 E-value=0.0021 Score=67.18 Aligned_cols=148 Identities=11% Similarity=0.282 Sum_probs=92.9
Q ss_pred ecCCCCceeEEEEee-CCcEEEEEEcCC-CCCeEEEEEeecccCcCceEEEEEc-CCCceeEEEEccCCCEEEEEeccCC
Q 005315 449 LDNKNDKIIAFAWEP-KGHRFAVIHGDS-PRPDISFYSMRTAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAGLKGF 525 (702)
Q Consensus 449 l~~h~~~v~~~~~sp-~g~~l~~~~~d~-~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~ 525 (702)
.++|..+.++++|++ |.+.||.+.... ....+.|||+.++-....-.....- .....++++|-.+.+.+.+|..
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~--- 174 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT--- 174 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc---
Confidence 456788999999998 667777775421 1237999999765221111111111 1224568999977777777766
Q ss_pred CceEEEEECC-CcceeeecccCceeeeEECC-CCCEEEEEEeecccccccEEEEEe-c--cceeee-e-----ccccEee
Q 005315 526 NGQLEFYNVD-ELETMATAEHFMATDVEWDP-TGRYVATAVTSVHEMENGFNIWSF-N--GKLLYR-T-----LKDHFFQ 594 (702)
Q Consensus 526 dg~v~i~d~~-~~~~~~~~~~~~i~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~-~--g~~l~~-~-----~~~~i~~ 594 (702)
...+.++|++ +...........+..+..+| .+.|+++.+ |+.+.+||- - ...+.. . ....+..
T Consensus 175 sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~------dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~ 248 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS------DGDIAIWDTYRNIENPLQIILRNENKKPKQLFA 248 (783)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc------cCceeeccchhhhccHHHHHhhCCCCcccceee
Confidence 6789999988 22222233334556677788 677776655 589999993 2 112211 1 1246899
Q ss_pred EEEeeCCCCCC
Q 005315 595 FLWRPRPPSFL 605 (702)
Q Consensus 595 ~~w~p~~~~l~ 605 (702)
++|.|..+-++
T Consensus 249 ~aycPtrtgll 259 (783)
T KOG1008|consen 249 LAYCPTRTGLL 259 (783)
T ss_pred EEeccCCcchh
Confidence 99999876444
No 461
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.08 E-value=0.0055 Score=56.52 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=52.0
Q ss_pred EEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 128 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h 128 (702)
-+||++|| .+.+.+++.||..+++ ..+ -...||+||+|.+..+|..|+..+||..|.+..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~--------~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDA--------DMKNGFGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccc--------eeecccceeccCchhhhhcccchhcCceeccee
Confidence 58999999 9999999999998876 233 245689999999999999999999999998773
No 462
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.05 E-value=2.6 Score=44.90 Aligned_cols=155 Identities=11% Similarity=0.100 Sum_probs=85.0
Q ss_pred CcccceEEECCCCcEEEEEeCCceEEeecC---cCcceeeeecCCCeeEEEecCCC-----CEEEEEcCCCCCCCcCCCc
Q 005315 203 YWTESFVQWSPLGTYLATVHRQGAAVWGGA---NTFNRLMRYAHPQVKLIDFSPGE-----KYLVTYSSHEPSNPRDANR 274 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~~i~iw~~~---~~~~~~~~~~~~~v~~i~fSpdg-----~~l~t~s~d~~~~~~~~~~ 274 (702)
-.++..++|. ||+.++-.. +.+-+.+ |.-..+.+|. .|..+.|+|-+ .+||.- ..
T Consensus 19 iHPvhGlaWT-DGkqVvLT~---L~l~~gE~kfGds~viGqFE--hV~GlsW~P~~~~~~paLLAVQ-Hk---------- 81 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTD---LQLHNGEPKFGDSKVIGQFE--HVHGLSWAPPCTADTPALLAVQ-HK---------- 81 (671)
T ss_pred hccccceEec-CCCEEEEEe---eeeeCCccccCCccEeeccc--eeeeeeecCcccCCCCceEEEe-cc----------
Confidence 3578889996 666555332 1111211 1222344443 48999999964 345544 44
Q ss_pred cEEEEEEcc-----CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEE-EecCCcccccceee
Q 005315 275 VVINIFDVR-----TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISV-YETESFTLIDKKSL 348 (702)
Q Consensus 275 ~~i~vwd~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v-~d~~~~~~~~~~~~ 348 (702)
..|.||.+. +++.+.+-..+-... -.--+. .+.|+| ....|+......+.| +++.....--+..+
T Consensus 82 khVtVWqL~~s~~e~~K~l~sQtcEi~e~---~pvLpQ-----GCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi 152 (671)
T PF15390_consen 82 KHVTVWQLCPSTTERNKLLMSQTCEIREP---FPVLPQ-----GCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADI 152 (671)
T ss_pred ceEEEEEeccCccccccceeeeeeeccCC---cccCCC-----cccccC-CCceEEEEecCceeEeeeeeeCCceEEEec
Confidence 589999874 233332222111100 000122 347999 888998888444443 44442222112223
Q ss_pred ccC-CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 349 KVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 349 ~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
... -|.+.+|.+||+.|++. -+....-++|+-..+
T Consensus 153 ~~~G~IhCACWT~DG~RLVVA------vGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 153 KTSGLIHCACWTKDGQRLVVA------VGSSLHSYIWDSAQK 188 (671)
T ss_pred cCCceEEEEEecCcCCEEEEE------eCCeEEEEEecCchh
Confidence 333 38999999999999873 233677788876443
No 463
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.00 E-value=2.5 Score=44.24 Aligned_cols=97 Identities=13% Similarity=0.196 Sum_probs=50.7
Q ss_pred EEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC-ceeEEEEc-----cCCCEEEEEeccCCCceEEEEECCCcceee
Q 005315 468 FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-QANALFWS-----PSGRFIVLAGLKGFNGQLEFYNVDELETMA 541 (702)
Q Consensus 468 l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~s-----pdg~~l~~~~~~~~dg~v~i~d~~~~~~~~ 541 (702)
+++...+. .++++.+-+.+. ..+.+... .+..+.+- ..+..|++... +|.+++|.+...+.+.
T Consensus 228 ~vVvvSe~---~irv~~~~~~k~-----~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~---~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 228 YVVVVSES---DIRVFKPPKSKG-----AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN---NGSIRIYSLPSLKEIK 296 (395)
T ss_dssp EEEEE-SS---EEEEE-TT---E-----EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET---TSEEEEEETTT--EEE
T ss_pred EEEEEccc---ceEEEeCCCCcc-----cceeeccccccceEEEEeecccCCceEEEEEEC---CCcEEEEECCCchHhh
Confidence 34444445 799988754332 22333222 23344442 34556666665 9999999999888776
Q ss_pred eccc------CceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 542 TAEH------FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 542 ~~~~------~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
.... ..+....++++|..++-.+. ..+.++.+-+
T Consensus 297 ~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp------sE~~l~sv~~ 336 (395)
T PF08596_consen 297 SVSLPPPLDSRRLSSSSISRNGDIFYWTGP------SEIQLFSVWG 336 (395)
T ss_dssp EEE-SS---HHHHTT-EE-TTS-EEEE-SS------SEEEEEEEES
T ss_pred cccCCCccccccccccEECCCCCEEEEeCc------ccEEEEEEEc
Confidence 5332 34557888999996666544 5666666543
No 464
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.93 E-value=0.0098 Score=58.16 Aligned_cols=81 Identities=19% Similarity=0.119 Sum_probs=68.6
Q ss_pred CCCCcEEEECCCC-CCChhhHHHhHhcccc---------ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccC
Q 005315 56 SGFGNIIVVDNLP-VVPKEKFEKLEGVIKE---------DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 125 (702)
Q Consensus 56 ~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~---------~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 125 (702)
..+-..|||-+|| .+++..+...|.+.+. ..|++=+|.+|+++||=|-|+|+++..|+.|+..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 3345689999999 9999999999995332 36777788899999999999999999999999999999998
Q ss_pred CeeEEEEEeccC
Q 005315 126 RAHIFAVNMFDD 137 (702)
Q Consensus 126 ~~h~~~v~~~~d 137 (702)
++ +++|.++..
T Consensus 143 gn-~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GN-TIKVSLAER 153 (351)
T ss_pred CC-Cchhhhhhh
Confidence 84 787776554
No 465
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.89 E-value=0.019 Score=58.42 Aligned_cols=60 Identities=20% Similarity=0.460 Sum_probs=52.3
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcc--ccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHH
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVI--KEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEK 118 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~--~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~ 118 (702)
-+.+|-..||| .++++++.++|+-+ ....|.||+|. .+++.|=|||.|++.+.|++|+..
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH
Confidence 45689999999 99999999999944 33578999997 789999999999999999999654
No 466
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.83 E-value=0.54 Score=52.91 Aligned_cols=135 Identities=12% Similarity=0.131 Sum_probs=79.7
Q ss_pred CCCcEEEEEecCCcceeeeeeecccccceeEEccCC-------CEEEEEEcccccccccccccEEEEEEecCCcceeEEE
Q 005315 376 NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG-------DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE 448 (702)
Q Consensus 376 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-------~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 448 (702)
...-.|+.+|+..++.+....+..... -..+.|+. ...+++.+++. +..|+.+..+..+....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~---------lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNS---------LFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcc-eeEecccccccccCCCceEEEECCCc---------eEEeccCCCCCceeecc
Confidence 355679999999999887766544221 11223322 12223333322 33344443332111101
Q ss_pred --ecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccC
Q 005315 449 --LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKG 524 (702)
Q Consensus 449 --l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~ 524 (702)
.........|++-+.+| +||+|+.+| .|++||--. .. .-..++ +.+|.+|..+.||++|+..+
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G---~IRLyd~~g-~~-----AKT~lp~lG~pI~~iDvt~DGkwilaTc--- 637 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKG---DIRLYDRLG-KR-----AKTALPGLGDPIIGIDVTADGKWILATC--- 637 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCC---cEEeecccc-hh-----hhhcCCCCCCCeeEEEecCCCcEEEEee---
Confidence 11234456677777666 799999999 999999422 11 222233 56899999999999998887
Q ss_pred CCceEEEEEC
Q 005315 525 FNGQLEFYNV 534 (702)
Q Consensus 525 ~dg~v~i~d~ 534 (702)
+..|.+++.
T Consensus 638 -~tyLlLi~t 646 (794)
T PF08553_consen 638 -KTYLLLIDT 646 (794)
T ss_pred -cceEEEEEE
Confidence 577888775
No 467
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=95.64 E-value=0.022 Score=58.74 Aligned_cols=70 Identities=20% Similarity=0.295 Sum_probs=50.2
Q ss_pred EEEECCCC-CCChhhHHHhHhcccc---ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIKE---DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~~---~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.|||.||| .++++.|+..|..+|. .+|.+-. + .++...|+||+|.+...++.|+..- =..+ +.+.+.|..
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~-~-~~~~~~fgFV~f~~~~~~~~~i~As-p~~i-g~~kl~Vee 363 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS-P-GGKNPCFGFVEFENAAAVQNAIEAS-PLEI-GGRKLNVEE 363 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEec-c-CCCcCceEEEEEeecchhhhhhhcC-cccc-CCeeEEEEe
Confidence 39999999 9999999999998877 2333322 2 2444499999999999998887765 2222 344666654
No 468
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=4.5 Score=44.38 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=64.7
Q ss_pred CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee---cccCceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 503 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 503 ~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~---~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
..+..+..||++++|+.-+. .|.+.+-+.+..+.+.. ..+.+.-.++|.-+...+++. +..+.+..-
T Consensus 217 ~~~~ki~VS~n~~~laLyt~---~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~-------e~~l~lvgp 286 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTE---TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSW-------EVNLMLVGP 286 (829)
T ss_pred ceEEEEEEcCCcceEEEEec---CCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEE-------eeeEEEEcC
Confidence 45778999999999999988 99999998886555443 233444478888776332222 345555555
Q ss_pred ccceeeeeccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 580 NGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 580 ~g~~l~~~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.|..+.-.-...+. +.--+||-.++|.+.-.-++
T Consensus 287 ~gd~V~f~yd~t~~-l~~E~DGVRI~t~t~~EFl~ 320 (829)
T KOG2280|consen 287 PGDSVQFYYDETAI-LSAEVDGVRIITSTSHEFLQ 320 (829)
T ss_pred CCCccccccCCCce-eeeccCeeEEeccchHHHHH
Confidence 55443322222222 67777888888877655444
No 469
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.54 E-value=3.3 Score=42.30 Aligned_cols=182 Identities=11% Similarity=0.118 Sum_probs=96.6
Q ss_pred CeEEEEecCCcccccceeeccC-Cee---EEEeCCC----CCeEEEEeecCCCCC--CC-cEEEEEecCCc----cee--
Q 005315 330 NMISVYETESFTLIDKKSLKVE-NVM---DFSWSPT----DPIISLFVPELGGGN--QP-ARVSLVQIPSK----EEL-- 392 (702)
Q Consensus 330 ~~i~v~d~~~~~~~~~~~~~~~-~v~---~~~~sp~----~~~la~~~~~~~~~~--~~-~~i~~~~~~~~----~~~-- 392 (702)
..|++.|..++..+....+... .+. .+.+..+ ..+|++.+.-..+.+ .. +++.++++... ..+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3577788777776655544322 233 3444432 356665332110111 23 88999988773 122
Q ss_pred -eeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEE
Q 005315 393 -RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 471 (702)
Q Consensus 393 -~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~ 471 (702)
.... .......+ .+-+.+|+++.... +.+|++.... ....... +..++...+....+++++++
T Consensus 82 i~~~~-~~g~V~ai--~~~~~~lv~~~g~~----------l~v~~l~~~~-~l~~~~~--~~~~~~i~sl~~~~~~I~vg 145 (321)
T PF03178_consen 82 IHSTE-VKGPVTAI--CSFNGRLVVAVGNK----------LYVYDLDNSK-TLLKKAF--YDSPFYITSLSVFKNYILVG 145 (321)
T ss_dssp EEEEE-ESS-EEEE--EEETTEEEEEETTE----------EEEEEEETTS-SEEEEEE--E-BSSSEEEEEEETTEEEEE
T ss_pred EEEEe-ecCcceEh--hhhCCEEEEeecCE----------EEEEEccCcc-cchhhhe--ecceEEEEEEeccccEEEEE
Confidence 2222 22233333 33345566666543 6899998876 1111221 12333334444457789888
Q ss_pred EcCCCCCeEEEEEeecccCcCceEEEEE-cCCCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 472 HGDSPRPDISFYSMRTAQHAGRVSKLTT-LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 472 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
.... .+.++..+... .....+.. .....+.++.+-++++.++++.. +|.|.++...
T Consensus 146 D~~~---sv~~~~~~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~---~gnl~~l~~~ 202 (321)
T PF03178_consen 146 DAMK---SVSLLRYDEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDK---DGNLFVLRYN 202 (321)
T ss_dssp ESSS---SEEEEEEETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEET---TSEEEEEEE-
T ss_pred Eccc---CEEEEEEEccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcC---CCeEEEEEEC
Confidence 7766 68887665422 11233333 33446888888877777777776 8999998776
No 470
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.46 E-value=0.013 Score=53.02 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=49.2
Q ss_pred cEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccC
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 125 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 125 (702)
+++||.||. .++|+.|+.|++.+-...+.-... ....-.||++|++.+.|..|+..|.|..+.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~---~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA---RGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec---CCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 679999999 999999999999765422222222 233348999999999999999999998764
No 471
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.23 E-value=0.057 Score=41.04 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=39.8
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
+.++|-||| ..+...+..=...+-+ .+=.+. .-+.|-|+|.|.+++.|..|.+.|+|-..-++ .++|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl-----~v~~~tAilrF~~~~~A~RA~KRmegEdVfG~-kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVL-----SVSGGTAILRFPNQEFAERAQKRMEGEDVFGN-KISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EE-----E--TT-EEEEESSHHHHHHHHHHHTT--SSSS---EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEE-----EEeCCEEEEEeCCHHHHHHHHHhhcccccccc-eEEEE
Confidence 579999999 7887765443333322 111111 11347899999999999999999999888776 55554
No 472
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.07 E-value=0.59 Score=38.30 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=45.0
Q ss_pred eeEEEecC---CC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 246 VKLIDFSP---GE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 246 v~~i~fSp---dg-~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
|.+++++. || +.|++|+.| ..|+||+ ....+..+....... .+.-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D----------~~IRvf~--~~e~~~Ei~e~~~v~--------------~L~~~~-~~ 54 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD----------FEIRVFK--GDEIVAEITETDKVT--------------SLCSLG-GG 54 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC----------cEEEEEe--CCcEEEEEecccceE--------------EEEEcC-CC
Confidence 55666554 33 689999999 9999997 557777776655443 444455 44
Q ss_pred cEEEEec-CCeEEEEecC
Q 005315 322 KYFAKLG-KNMISVYETE 338 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~ 338 (702)
.|+.+- +|+|-+|+-.
T Consensus 55 -~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 55 -RFAYALANGTVGVYDRS 71 (111)
T ss_pred -EEEEEecCCEEEEEeCc
Confidence 455555 9999999764
No 473
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.03 E-value=0.049 Score=55.60 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=50.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHH
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEK 118 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~ 118 (702)
.-+|-+.+|| .++++++..+|+-.+-.++.++.+ +|++.|=|||+|.+.+++++|.++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCGIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCceeEEEEecc--CCCcCcceEEEeechHHHHHHHHh
Confidence 4478899999 999999999999766555667764 799999999999999999999876
No 474
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.95 E-value=0.079 Score=56.24 Aligned_cols=75 Identities=16% Similarity=0.332 Sum_probs=65.0
Q ss_pred CCCCc-EEEECCCC-CCChhhHHHhHhcccc--ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 005315 56 SGFGN-IIVVDNLP-VVPKEKFEKLEGVIKE--DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 131 (702)
Q Consensus 56 ~~~~~-~~~v~~lp-~~~~~~~~~l~~~~~~--~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~ 131 (702)
...++ +|-+.|+| .|+-+++-++|.-|.- .+|.+-..+ .|+..|=|-|.|++.++|..|...|++.++..+ +++
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd-~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr-~V~ 940 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND-DGVPTGECMVAFESQEEARRASMDLDGQKIRNR-VVS 940 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecC-CCCcccceeEeecCHHHHHhhhhccccCcccce-eEE
Confidence 34555 89999999 9999999999996655 789998885 899999999999999999999999999999766 544
Q ss_pred E
Q 005315 132 V 132 (702)
Q Consensus 132 v 132 (702)
+
T Consensus 941 l 941 (944)
T KOG4307|consen 941 L 941 (944)
T ss_pred E
Confidence 4
No 475
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.85 E-value=7.3 Score=42.42 Aligned_cols=77 Identities=17% Similarity=0.109 Sum_probs=43.7
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC-CcEEEEecCCeEE
Q 005315 255 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMIS 333 (702)
Q Consensus 255 g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d-g~~la~~~d~~i~ 333 (702)
+..+..++.+ +.|.-.|..+|+.+-.+........ . . ...+.-+ +.. . + +..++...++.|.
T Consensus 61 ~g~vy~~~~~----------g~l~AlD~~tG~~~W~~~~~~~~~~-~-~--~~~~~~g-~~~-~-~~~~V~v~~~~g~v~ 123 (488)
T cd00216 61 DGDMYFTTSH----------SALFALDAATGKVLWRYDPKLPADR-G-C--CDVVNRG-VAY-W-DPRKVFFGTFDGRLV 123 (488)
T ss_pred CCEEEEeCCC----------CcEEEEECCCChhhceeCCCCCccc-c-c--cccccCC-cEE-c-cCCeEEEecCCCeEE
Confidence 3446666666 7888999999988776654332000 0 0 0000000 111 1 3 4444433489999
Q ss_pred EEecCCcccccceee
Q 005315 334 VYETESFTLIDKKSL 348 (702)
Q Consensus 334 v~d~~~~~~~~~~~~ 348 (702)
-+|..+++.+.+...
T Consensus 124 AlD~~TG~~~W~~~~ 138 (488)
T cd00216 124 ALDAETGKQVWKFGN 138 (488)
T ss_pred EEECCCCCEeeeecC
Confidence 999999988876544
No 476
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=94.80 E-value=7.6 Score=42.34 Aligned_cols=212 Identities=15% Similarity=0.148 Sum_probs=112.9
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
+..++.|||+++||.+-.. .....-++++-|+.+|..+......... .+.|.+ |++.|.
T Consensus 131 Lg~~~~s~D~~~la~s~D~-----~G~e~y~lr~kdL~tg~~~~d~i~~~~~---------------~~~Wa~-d~~~lf 189 (682)
T COG1770 131 LGAASISPDHNLLAYSVDV-----LGDEQYTLRFKDLATGEELPDEITNTSG---------------SFAWAA-DGKTLF 189 (682)
T ss_pred eeeeeeCCCCceEEEEEec-----ccccEEEEEEEecccccccchhhccccc---------------ceEEec-CCCeEE
Confidence 7788999999999876544 1222368999999999865443322111 579999 999777
Q ss_pred Eec--CC--eEEEEecCCcc--cccceeeccCC---eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeee
Q 005315 326 KLG--KN--MISVYETESFT--LIDKKSLKVEN---VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 396 (702)
Q Consensus 326 ~~~--d~--~i~v~d~~~~~--~~~~~~~~~~~---v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 396 (702)
... ++ .-+||--.-+. .......+... ..++.-+.+.++|+.. .+.-.+..+++++..........-
T Consensus 190 Yt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~----~~~~~tsE~~ll~a~~p~~~p~vv 265 (682)
T COG1770 190 YTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVIS----LGSHITSEVRLLDADDPEAEPKVV 265 (682)
T ss_pred EEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEE----cCCCcceeEEEEecCCCCCceEEE
Confidence 665 22 23344322222 11111122111 2233334456666653 224455677777654432111111
Q ss_pred ecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC
Q 005315 397 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 476 (702)
Q Consensus 397 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 476 (702)
..........-...|.+++..++...+ ++.|+.......+.....+..|...+.--.++--..+|+....++.
T Consensus 266 ~pr~~g~eY~~eh~~d~f~i~sN~~gk-------nf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~g 338 (682)
T COG1770 266 LPRENGVEYSVEHGGDRFYILSNADGK-------NFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEG 338 (682)
T ss_pred EEcCCCcEEeeeecCcEEEEEecCCCc-------ceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccC
Confidence 111112222223345666555544321 2455554431111122234466666666666667788888888777
Q ss_pred CCeEEEEEeeccc
Q 005315 477 RPDISFYSMRTAQ 489 (702)
Q Consensus 477 ~~~v~i~d~~~~~ 489 (702)
.+.|.+++.+++.
T Consensus 339 lp~v~v~~~~~~~ 351 (682)
T COG1770 339 LPRVVVRDRKTGE 351 (682)
T ss_pred CceEEEEecCCCc
Confidence 7789999886554
No 477
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.79 E-value=5.6 Score=40.77 Aligned_cols=245 Identities=14% Similarity=0.153 Sum_probs=116.2
Q ss_pred eEEEcCCCCcEEEEecCCeEEEEecCCccc---ccce----eeccCCeeEEEeCCC----CCeEEEEeec-CCCCCCCcE
Q 005315 313 VFRWGGGKDKYFAKLGKNMISVYETESFTL---IDKK----SLKVENVMDFSWSPT----DPIISLFVPE-LGGGNQPAR 380 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~d~~i~v~d~~~~~~---~~~~----~~~~~~v~~~~~sp~----~~~la~~~~~-~~~~~~~~~ 380 (702)
.++|.| ||+++++-..|.|.+++ ..+.. +... .....+...++++|+ +.+.++++.. ........+
T Consensus 6 ~~a~~p-dG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 6 SMAFLP-DGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEET-TSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred EEEEeC-CCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 689999 99998877799999999 33332 1111 112245889999995 3333433321 111233345
Q ss_pred EEEEecCCc-------ceee-eeee---cccccceeEEccCCCEEEEEEccccc-----ccccccccEEEEEEecCCcc-
Q 005315 381 VSLVQIPSK-------EELR-QKNL---FSVSDCKMYWQSSGDYLAVKVDRYTK-----TKKSTYTGFELFRIKERDIP- 443 (702)
Q Consensus 381 i~~~~~~~~-------~~~~-~~~~---~~~~~~~~~~s~~g~~l~~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~- 443 (702)
|..+..... +.+. .... ..-....+.|.|+| .|.+...+... ...... -.+++++..+..
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~--G~ilri~~dG~~p 160 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLR--GKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSST--TEEEEEETTSSB-
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCccccccccccc--ceEEEecccCcCC
Confidence 666655433 1111 1111 11222457899999 55554444332 111112 246677654321
Q ss_pred ------------eeEEEecCCCCceeEEEEeeC-CcEEEEEEcCCCCCeEEEEEeecccCc-------------------
Q 005315 444 ------------IEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHA------------------- 491 (702)
Q Consensus 444 ------------~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~------------------- 491 (702)
.+.... ++ .....++|+|. |..+++-.+... .=.|..+..+..-
T Consensus 161 ~dnP~~~~~~~~~~i~A~-Gl-RN~~~~~~d~~tg~l~~~d~G~~~--~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAY-GL-RNPFGLAFDPNTGRLWAADNGPDG--WDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE----SEEEEEEEETTTTEEEEEEE-SSS--SEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCccccCCCceEEEEEe-CC-CccccEEEECCCCcEEEEccCCCC--CcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 111111 21 23457999998 777765544321 2233333332110
Q ss_pred ----CceEEEEEcCCC-ceeEEEEcc-------CCCEEEEEeccCCCceEEEEECCCcceee-e-----cccCceeeeEE
Q 005315 492 ----GRVSKLTTLKGK-QANALFWSP-------SGRFIVLAGLKGFNGQLEFYNVDELETMA-T-----AEHFMATDVEW 553 (702)
Q Consensus 492 ----~~~~~~~~~~~~-~v~~~~~sp-------dg~~l~~~~~~~~dg~v~i~d~~~~~~~~-~-----~~~~~i~~~~~ 553 (702)
.-..++..+..+ .+..+.|-. .|.+++..-. .+.|....++....+. . .....+.++++
T Consensus 237 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYG---GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp SS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETT---TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred cCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCC---CCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 001123333332 344455543 3444444332 5677777776332221 1 12237889999
Q ss_pred CCCCCEEEEEEeecccccccE
Q 005315 554 DPTGRYVATAVTSVHEMENGF 574 (702)
Q Consensus 554 spdg~~l~t~s~~~~~~d~~v 574 (702)
.|||...++... ++.|
T Consensus 314 ~pDG~Lyv~~d~-----~G~i 329 (331)
T PF07995_consen 314 GPDGALYVSDDS-----DGKI 329 (331)
T ss_dssp ETTSEEEEEE-T-----TTTE
T ss_pred cCCCeEEEEECC-----CCeE
Confidence 999997777765 5655
No 478
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=94.76 E-value=0.34 Score=52.62 Aligned_cols=102 Identities=15% Similarity=0.260 Sum_probs=63.5
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
-..++|-|.|..++|...|..++ ...|..+. ++|-.-..|.... +...... ...|.- ....+|
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~-----S~~ViFfE-rNGLrHGef~lr~-----~~dEk~~-----~~~wn~-~s~vla 311 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCST-----SESVIFFE-RNGLRHGEFDLRV-----GCDEKAF-----LENWNL-LSTVLA 311 (1243)
T ss_pred hhccccccCCceeeeeccCCCCC-----cceEEEEc-cCCcccCCccccC-----Cchhhhh-----hhhhhH-HHHHHH
Confidence 34589999999999988662222 14566665 3443222221100 0001111 346666 666677
Q ss_pred EecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCe
Q 005315 326 KLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI 364 (702)
Q Consensus 326 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 364 (702)
.+..+.+.+|-..+....-+.....+++.-+.|+|....
T Consensus 312 v~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 312 VAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred HhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCc
Confidence 777899999988877666566677888999999998543
No 479
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.68 E-value=2 Score=35.24 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=44.6
Q ss_pred eeEEEEee---CC-cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEE
Q 005315 456 IIAFAWEP---KG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLE 530 (702)
Q Consensus 456 v~~~~~sp---~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~ 530 (702)
|+++++.. +| +.|++++.|. .|++|+-.. .+.++. ...+.+++-...++ ++.+-. +|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~---~IRvf~~~e--------~~~Ei~e~~~v~~L~~~~~~~-F~Y~l~---NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDF---EIRVFKGDE--------IVAEITETDKVTSLCSLGGGR-FAYALA---NGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCc---EEEEEeCCc--------EEEEEecccceEEEEEcCCCE-EEEEec---CCEEE
Confidence 45555554 22 5788999998 999998532 555555 34677777777755 555555 89999
Q ss_pred EEECC
Q 005315 531 FYNVD 535 (702)
Q Consensus 531 i~d~~ 535 (702)
+|+-.
T Consensus 67 vY~~~ 71 (111)
T PF14783_consen 67 VYDRS 71 (111)
T ss_pred EEeCc
Confidence 99765
No 480
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.68 E-value=0.12 Score=35.21 Aligned_cols=33 Identities=6% Similarity=0.184 Sum_probs=29.1
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 288 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~ 288 (702)
.|.+++|||....||.++.+ |.|.|+.+ +++.+
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~----------g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTED----------GEVLVYRL-NWQRI 45 (47)
T ss_pred cEEEEEECCCCCEEEEEECC----------CeEEEEEC-CCcCc
Confidence 49999999999999999999 99999998 66543
No 481
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.68 E-value=0.082 Score=50.90 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=48.4
Q ss_pred cEEEECCCC-CC-Chh-----hHHHhHhcccc-ccEEeecCCCC---CceeeEE--EEEeCCHHHHHHHHHHhCCCccCC
Q 005315 60 NIIVVDNLP-VV-PKE-----KFEKLEGVIKE-DGLWMPVDPET---QKSLGYC--FIEYNTPQEAELAKEKTNGYKLDR 126 (702)
Q Consensus 60 ~~~~v~~lp-~~-~~~-----~~~~l~~~~~~-~~~~~~~d~~~---~~~~g~~--fv~~~~~~~a~~a~~~~~~~~~~~ 126 (702)
+.+||.||| .| +|+ +..+.|+++|+ ..|.+ ++.| ..+.|-+ +|+|.+.++|..+|...+|.-+|+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvv--Nkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVV--NKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEe--cccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 679999999 44 444 45677778887 33333 3222 1223433 999999999999999999999999
Q ss_pred ee
Q 005315 127 AH 128 (702)
Q Consensus 127 ~h 128 (702)
++
T Consensus 193 r~ 194 (480)
T COG5175 193 RV 194 (480)
T ss_pred ce
Confidence 94
No 482
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.67 E-value=3.7 Score=38.18 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=35.5
Q ss_pred CCcEEEEecCCeEEEEecCCc--ccccceeeccCCeeEEEeCCCCCeEEEEeecC
Q 005315 320 KDKYFAKLGKNMISVYETESF--TLIDKKSLKVENVMDFSWSPTDPIISLFVPEL 372 (702)
Q Consensus 320 dg~~la~~~d~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~ 372 (702)
.+.+|+..+...|.+|++... .++..+ ...+.|..+.++..|++|++.-...
T Consensus 28 ~d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~Tv~~V~~l~y~~~GDYlvTlE~k~ 81 (215)
T PF14761_consen 28 PDALFVAASGCKVEVYDLEQEECPLLCTF-STVGRVLQLVYSEAGDYLVTLEEKN 81 (215)
T ss_pred CceEEEEcCCCEEEEEEcccCCCceeEEE-cchhheeEEEeccccceEEEEEeec
Confidence 344555556888999998832 222222 2446799999999999999875443
No 483
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.62 E-value=0.089 Score=33.04 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=28.4
Q ss_pred ecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEE
Q 005315 449 LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 484 (702)
Q Consensus 449 l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 484 (702)
+..|...|.++.|+|.+..+++++.++ .+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~---~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDG---TIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCC---eEEEcC
Confidence 335688999999999999999999888 899885
No 484
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.39 E-value=0.1 Score=35.48 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=30.3
Q ss_pred CceeeeEECCCCCEEEEEEeecccccccEEEEEecccee
Q 005315 546 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL 584 (702)
Q Consensus 546 ~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l 584 (702)
..|..++|+|....||.++. +|.|.++.++++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~-----~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTE-----DGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEEC-----CCeEEEEECCCcCc
Confidence 56889999999999999999 99999999987654
No 485
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.37 E-value=4.1 Score=40.72 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=74.4
Q ss_pred ccCCCcccceEEECCCCcEEEEEeCCce-EEeecC-cCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005315 199 YKRSYWTESFVQWSPLGTYLATVHRQGA-AVWGGA-NTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 276 (702)
Q Consensus 199 ~~~~~~~v~~v~~Spdg~~lat~~~~~i-~iw~~~-~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~ 276 (702)
...-...+..+.-++||+|+|++....+ .-|+.- ..+.+..+.....|..+.|+|++...+.+ .. +.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G----------g~ 208 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG----------GQ 208 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT----------TE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC----------cE
Confidence 3444567888899999999999977775 478644 24666666666779999999998876655 45 56
Q ss_pred EEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceee--c-cCCe
Q 005315 277 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSL--K-VENV 353 (702)
Q Consensus 277 i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~--~-~~~v 353 (702)
|+.=+ .......+..+..+. ...+.....++|.+ ++...|+++.|.+. ...+.++.-.+... . ...+
T Consensus 209 ~~~s~--~~~~~~~w~~~~~~~------~~~~~~~ld~a~~~-~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~ 278 (302)
T PF14870_consen 209 IQFSD--DPDDGETWSEPIIPI------KTNGYGILDLAYRP-PNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNL 278 (302)
T ss_dssp EEEEE---TTEEEEE---B-TT------SS--S-EEEEEESS-SS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS--
T ss_pred EEEcc--CCCCccccccccCCc------ccCceeeEEEEecC-CCCEEEEeCCccEE-EeCCCCccceECccccCCCCce
Confidence 66555 122222332221111 01111122679999 99999988888654 34444432222111 1 2346
Q ss_pred eEEEeCCCCCeEEE
Q 005315 354 MDFSWSPTDPIISL 367 (702)
Q Consensus 354 ~~~~~sp~~~~la~ 367 (702)
..+.|.+..+-+++
T Consensus 279 ~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 279 YRIVFVNPDKGFVL 292 (302)
T ss_dssp -EEEEEETTEEEEE
T ss_pred EEEEEcCCCceEEE
Confidence 77777766666665
No 486
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=94.34 E-value=0.027 Score=58.23 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=61.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
-.++++.-|+ .+++-+|..+|+.+++ .++.+..|+.++++||.|+|+|.+.+.-..|| .|.|..+.+- .+.|-
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~-pv~vq 253 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGV-PVIVQ 253 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCc-eeEec
Confidence 3577888888 8999999999999888 48999999999999999999999988777776 7899888766 44443
No 487
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.18 E-value=10 Score=41.29 Aligned_cols=29 Identities=7% Similarity=0.236 Sum_probs=23.6
Q ss_pred CCCEEEEEeccCCCceEEEEECCCcceeeecc
Q 005315 513 SGRFIVLAGLKGFNGQLEFYNVDELETMATAE 544 (702)
Q Consensus 513 dg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~ 544 (702)
.+..|++++. +|.|+.+|..+++.+-+.+
T Consensus 405 ~g~~v~~g~~---dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 405 AGNLVFAGAA---DGYFRAFDATTGKELWKFR 433 (488)
T ss_pred cCCeEEEECC---CCeEEEEECCCCceeeEEE
Confidence 4567888776 9999999999999887643
No 488
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=94.12 E-value=0.14 Score=46.95 Aligned_cols=73 Identities=18% Similarity=0.348 Sum_probs=59.8
Q ss_pred CCCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 56 SGFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 56 ~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.....++++.||| .++.+.+..+|..+.. ..+.|.- ..+|.|||+|.+...|..|...+.|.++-+.|.+.+.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~-----~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP-----PRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEecc-----CCCceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3456889999999 9999999999997643 3455542 3468999999999999999999999998878877765
No 489
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=1.1 Score=46.79 Aligned_cols=107 Identities=13% Similarity=0.115 Sum_probs=67.3
Q ss_pred cceEEECCCCc--------EEEEEeCCceEEeecCcCcceeeee--cCC-----CeeEEEecCCCCEEEEEcCCCCCCCc
Q 005315 206 ESFVQWSPLGT--------YLATVHRQGAAVWGGANTFNRLMRY--AHP-----QVKLIDFSPGEKYLVTYSSHEPSNPR 270 (702)
Q Consensus 206 v~~v~~Spdg~--------~lat~~~~~i~iw~~~~~~~~~~~~--~~~-----~v~~i~fSpdg~~l~t~s~d~~~~~~ 270 (702)
|+-+.+.|+++ .|+-.+.++|.-||..-.+.-.... .|. +-.|++-.-+| |||.||.+
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~------ 450 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLK------ 450 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecC------
Confidence 56666666653 3444556668888865222211111 121 35566655555 78999999
Q ss_pred CCCccEEEEEEccCCcEEe-eccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecC
Q 005315 271 DANRVVINIFDVRTGKVMR-DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE 338 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~ 338 (702)
|.|++||- .|...+ .|++-..++. .+..+. ||++|+...+..+.+.++.
T Consensus 451 ----GdIRLYdr-i~~~AKTAlPgLG~~I~-------------hVdvta-dGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 451 ----GDIRLYDR-IGRRAKTALPGLGDAIK-------------HVDVTA-DGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ----CcEEeehh-hhhhhhhcccccCCcee-------------eEEeec-cCcEEEEecccEEEEEEEe
Confidence 99999995 665443 3444444432 567788 9999998888888887765
No 490
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=0.17 Score=56.92 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=48.4
Q ss_pred cCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee---cCC--CeeEEEecCCCCEEEEEcCC
Q 005315 200 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY---AHP--QVKLIDFSPGEKYLVTYSSH 264 (702)
Q Consensus 200 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~---~~~--~v~~i~fSpdg~~l~t~s~d 264 (702)
..-..+|++++|+.+|+.++.|..+| |.+||.. ....+..+ .++ +|..+.+..++..++++...
T Consensus 127 e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~-~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~ 196 (1206)
T KOG2079|consen 127 ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH-RAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTG 196 (1206)
T ss_pred CccCCcceeeEecCCCceeccccCCCcEEEEEcc-CCcceeeeeecCCccceEEEEEEeCCCcEEEEccCC
Confidence 34568999999999999999999999 7799999 65555444 333 36666666666777777666
No 491
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.97 E-value=2.9 Score=43.67 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=76.3
Q ss_pred cceeEEccCCCEEEEEEccccccccc-ccccEEEEEEec---CCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCC
Q 005315 402 DCKMYWQSSGDYLAVKVDRYTKTKKS-TYTGFELFRIKE---RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 477 (702)
Q Consensus 402 ~~~~~~s~~g~~l~~~~~~~~~~~~~-~~~~~~l~~l~~---~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 477 (702)
...++|.++|+.+++...+....... ....-+|+.+.. .+.......+...-...+.+++.++| .++ +...
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~--- 90 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP--- 90 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC---
Confidence 34567888888666543221110000 000113444443 22222222221223345788999988 443 3322
Q ss_pred CeEEEE-Eeecc-cCcCceE-EEEEcCC------CceeEEEEccCCCEEEEEeccC----------------CCceEEEE
Q 005315 478 PDISFY-SMRTA-QHAGRVS-KLTTLKG------KQANALFWSPSGRFIVLAGLKG----------------FNGQLEFY 532 (702)
Q Consensus 478 ~~v~i~-d~~~~-~~~~~~~-~~~~~~~------~~v~~~~~spdg~~l~~~~~~~----------------~dg~v~i~ 532 (702)
.|..| +.... ....+.+ .+..+.. +..+.++|.|||.+.++.+... ..|.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 44444 33211 0110112 2333332 3477899999998766554210 12456666
Q ss_pred ECCCcceeee-cccCceeeeEECCCCCEEEEEE
Q 005315 533 NVDELETMAT-AEHFMATDVEWDPTGRYVATAV 564 (702)
Q Consensus 533 d~~~~~~~~~-~~~~~i~~~~~spdg~~l~t~s 564 (702)
+.++.+.... ........++|+|+|+.+++-.
T Consensus 170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 6664433221 2234567899999999876544
No 492
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.80 E-value=3 Score=45.80 Aligned_cols=54 Identities=22% Similarity=0.363 Sum_probs=31.5
Q ss_pred eEEEcCCCCcEEEEec-----CCeEEEEecCCcccccceeeccCC-eeEEEeCCCCCeEEEEe
Q 005315 313 VFRWGGGKDKYFAKLG-----KNMISVYETESFTLIDKKSLKVEN-VMDFSWSPTDPIISLFV 369 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~-----d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~sp~~~~la~~~ 369 (702)
.+.|.. |..|.+.+. ...++||.-. | ++...+-...+ -..++|-|+|..++++.
T Consensus 206 ~i~wrg-D~~y~~v~r~Ee~prra~rvysre-g-~lds~sep~~g~e~~LSWkpqgS~~ati~ 265 (1243)
T COG5290 206 IIFWRG-DTEYNLVGRSEERPRRAFRVYSRE-G-QLDSASEPVTGMEHQLSWKPQGSKYATIG 265 (1243)
T ss_pred EEEEcc-Ccceeeecchhcccccceeeeccc-c-ccccccCCcccchhccccccCCceeeeec
Confidence 467877 888887776 2456777533 1 22222122222 34578888888888753
No 493
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.71 E-value=6.1 Score=37.01 Aligned_cols=48 Identities=8% Similarity=0.089 Sum_probs=32.0
Q ss_pred EEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccC
Q 005315 459 FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 513 (702)
Q Consensus 459 ~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spd 513 (702)
+++..+|+.++++-+.+ +|.-+|+.+++. ..-..++..++++++|--.
T Consensus 217 m~ID~eG~L~Va~~ng~---~V~~~dp~tGK~----L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGG---TVQKVDPTTGKI----LLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ceEccCCcEEEEEecCc---EEEEECCCCCcE----EEEEEcCCCceEEEEecCC
Confidence 34455787777777766 888888876652 1333455668899888643
No 494
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.63 E-value=1.3 Score=46.18 Aligned_cols=147 Identities=13% Similarity=0.149 Sum_probs=78.2
Q ss_pred CceeEEEEeeCCcEEEEEEcC---------CCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEec
Q 005315 454 DKIIAFAWEPKGHRFAVIHGD---------SPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 454 ~~v~~~~~sp~g~~l~~~~~d---------~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~ 522 (702)
.....|+|.++|+.+++-..+ .....|.+++-..+.+. ......+. ....+.+++.++| |+++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~--~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK--YDKSNVFAEELSMVTGLAVAVGG--VYVATP 89 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC--cceeEEeecCCCCccceeEecCC--EEEeCC
Confidence 456679999999977765321 11114555554333322 21222222 2245789999999 444443
Q ss_pred cCCCceEEEE-ECCC-------cceeee-c------ccCceeeeEECCCCCEEEEEEee--------------ccccccc
Q 005315 523 KGFNGQLEFY-NVDE-------LETMAT-A------EHFMATDVEWDPTGRYVATAVTS--------------VHEMENG 573 (702)
Q Consensus 523 ~~~dg~v~i~-d~~~-------~~~~~~-~------~~~~i~~~~~spdg~~l~t~s~~--------------~~~~d~~ 573 (702)
..|..| +.+. .+.+.. . ++.....+.|.|||+..++.+.. .....+.
T Consensus 90 ----~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 90 ----PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred ----CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 345444 5431 222322 1 23457789999999865544421 0001134
Q ss_pred EEEEEeccceeeeec--cccEeeEEEeeCCCCCCChh
Q 005315 574 FNIWSFNGKLLYRTL--KDHFFQFLWRPRPPSFLTPE 608 (702)
Q Consensus 574 v~iw~~~g~~l~~~~--~~~i~~~~w~p~~~~l~s~~ 608 (702)
+.-++..+..+.... ....+.++|+|++..+++-.
T Consensus 166 i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 166 LFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 444555554443332 24457899999998776533
No 495
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.48 E-value=3.4 Score=39.33 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=49.2
Q ss_pred EEEccCCCEEEEEeccCCCceEEEEECCCcceeeec----------------ccCceeeeEECCCCCEEEEEEeeccccc
Q 005315 508 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA----------------EHFMATDVEWDPTGRYVATAVTSVHEME 571 (702)
Q Consensus 508 ~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~----------------~~~~i~~~~~spdg~~l~t~s~~~~~~d 571 (702)
+.+..++.+|++.+. +|.+++||+.+++.+... ....|+.+..+.+|.-|++-+.
T Consensus 16 ~~l~~~~~~Ll~iT~---~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn------ 86 (219)
T PF07569_consen 16 SFLECNGSYLLAITS---SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN------ 86 (219)
T ss_pred EEEEeCCCEEEEEeC---CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC------
Confidence 335667889888887 999999999987665431 3467888999999998887765
Q ss_pred ccEEEEEec
Q 005315 572 NGFNIWSFN 580 (702)
Q Consensus 572 ~~v~iw~~~ 580 (702)
+..+.|+.+
T Consensus 87 g~~y~y~~~ 95 (219)
T PF07569_consen 87 GDSYSYSPD 95 (219)
T ss_pred CCEEEeccc
Confidence 667778766
No 496
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.42 E-value=10 Score=38.79 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=29.8
Q ss_pred ceEEECCCCcEEEEEeCCc-eEEeecCcCc-ceeeee------cCCCeeEEEecCC
Q 005315 207 SFVQWSPLGTYLATVHRQG-AAVWGGANTF-NRLMRY------AHPQVKLIDFSPG 254 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~-~~~~~~------~~~~v~~i~fSpd 254 (702)
+.++|.|||+++++-- .| |.+++..+.. ..+... ...+...++|+|+
T Consensus 5 ~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred eEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 5789999999888755 55 8888744232 222222 1234899999995
No 497
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.18 E-value=1.7 Score=49.15 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=63.4
Q ss_pred EEEEEeCCceEEeecCcCcceee-----eec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEe-
Q 005315 217 YLATVHRQGAAVWGGANTFNRLM-----RYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR- 289 (702)
Q Consensus 217 ~lat~~~~~i~iw~~~~~~~~~~-----~~~-~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~- 289 (702)
.++..+.+++..||..-.+..+. .+. .....|++-+.+| +||+|+.+ |.|++|| +.|+..+
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~----------G~IRLyd-~~g~~AKT 612 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNK----------GDIRLYD-RLGKRAKT 612 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCC----------CcEEeec-ccchhhhh
Confidence 34445566688999873332222 111 2237788777776 68899999 9999999 4554322
Q ss_pred eccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecC
Q 005315 290 DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE 338 (702)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~ 338 (702)
.|++-..++. .+..+. ||++|+...+..|.++++.
T Consensus 613 ~lp~lG~pI~-------------~iDvt~-DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 613 ALPGLGDPII-------------GIDVTA-DGKWILATCKTYLLLIDTL 647 (794)
T ss_pred cCCCCCCCee-------------EEEecC-CCcEEEEeecceEEEEEEe
Confidence 3334334432 678899 9999998888888888754
No 498
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.13 E-value=0.11 Score=54.06 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=44.2
Q ss_pred ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 85 DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 85 ~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
..+++|+|-.+....|||||.|.+++.+..+.+..||++.++=+.-+++.+.
T Consensus 417 DFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 417 DFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred ceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 4799999987888999999999999999999999999987765555555544
No 499
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.76 E-value=0.53 Score=46.09 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=53.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCcc-CCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL-DRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~-~~~h~~~v~~~ 135 (702)
...+||+||- .+.+.+++.-|-++|+ .++.+.. -+|-|||+|.+-+.|+.|.+..-..-+ ++. ++++. |
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~-Rl~i~-W 299 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGF-RLKIK-W 299 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecce-EEEEE-e
Confidence 5689999996 9999999999999999 3544432 245999999999999999887544333 443 66665 4
Q ss_pred cC
Q 005315 136 DD 137 (702)
Q Consensus 136 ~d 137 (702)
..
T Consensus 300 g~ 301 (377)
T KOG0153|consen 300 GR 301 (377)
T ss_pred CC
Confidence 43
No 500
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=92.71 E-value=21 Score=40.29 Aligned_cols=277 Identities=15% Similarity=0.074 Sum_probs=0.0
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
+..+.++|.+..++..... ...........+.+-|..+ ++......... .+.|+| +|++++
T Consensus 15 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~--------------~~~~sp-dg~~~~ 75 (620)
T COG1506 15 VSDPRVSPPGGRLAYILTG-LDFLKPLYKSSLWVSDGKT---VRLLTFGGGVS--------------ELRWSP-DGSVLA 75 (620)
T ss_pred ccCcccCCCCceeEEeecc-ccccccccccceEEEeccc---ccccccCCccc--------------ccccCC-CCCEEE
Q ss_pred Eec-----CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEE---------------------EeecCCCCC-CC
Q 005315 326 KLG-----KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISL---------------------FVPELGGGN-QP 378 (702)
Q Consensus 326 ~~~-----d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~---------------------~~~~~~~~~-~~ 378 (702)
... ...+.+.+.. + ....+..++....|+|.++.+++ ..... .+ ..
T Consensus 76 ~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~ 148 (620)
T COG1506 76 FVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDG--RGGER 148 (620)
T ss_pred EEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecC--CCCcc
Q ss_pred cEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeE
Q 005315 379 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA 458 (702)
Q Consensus 379 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~ 458 (702)
..+++++..+ ..............+.|++++..++..........+.....+.+. .......+......+..
T Consensus 149 ~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 220 (620)
T COG1506 149 SDLYVVDIES--KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE------GNGELESLTPGEGSISK 220 (620)
T ss_pred cceEEEccCc--ccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec------CCCceEEEcCCCceeee
Q ss_pred EEEeeCCcEEEEEEcCCC-----CCeEEEEEeecccCcCceEEEEEcCC--CceeEEEEccCCCEEEEEeccCCC--ceE
Q 005315 459 FAWEPKGHRFAVIHGDSP-----RPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFN--GQL 529 (702)
Q Consensus 459 ~~~sp~g~~l~~~~~d~~-----~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~d--g~v 529 (702)
+.|.++|+.++..+.... ...+.+++.+.+... ....... .....+.+.-++..++.... + |..
T Consensus 221 ~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~ 293 (620)
T COG1506 221 LAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVD----GDLSSGDDTRGAWAVEGGLDGDGLLFIAT---DGGGSS 293 (620)
T ss_pred eeeCCCCCeeEEeccCCccCccccceEEEEeccccccc----eeeccCCcccCcHHhccccCCCcEEEEEe---cCCCce
Q ss_pred EEEECC---CcceeeecccCceeeeEECCCCCEEEEEEe
Q 005315 530 EFYNVD---ELETMATAEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 530 ~i~d~~---~~~~~~~~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
.++... ............+..+.+ +|+.+++.-.
T Consensus 294 ~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s 330 (620)
T COG1506 294 PLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYS 330 (620)
T ss_pred EEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEec
Done!