Query 005315
Match_columns 702
No_of_seqs 878 out of 4593
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 21:52:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.2E-41 4.1E-46 381.4 40.4 402 160-614 19-561 (611)
2 1nr0_A Actin interacting prote 100.0 2.3E-40 7.9E-45 371.0 40.2 404 161-614 61-605 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 4.7E-39 1.6E-43 358.7 42.1 381 163-614 184-574 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 3.9E-37 1.3E-41 343.2 41.0 395 161-614 18-451 (577)
5 1vyh_C Platelet-activating fac 100.0 1E-35 3.5E-40 316.3 34.2 281 196-579 101-409 (410)
6 3ow8_A WD repeat-containing pr 100.0 6.3E-35 2.2E-39 299.2 36.5 279 198-579 27-319 (321)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-35 8.2E-40 358.6 38.4 399 162-608 618-1197(1249)
8 1got_B GT-beta; complex (GTP-b 100.0 1.2E-34 4.1E-39 300.1 36.4 281 195-578 47-340 (340)
9 2oaj_A Protein SNI1; WD40 repe 100.0 3.5E-35 1.2E-39 341.1 35.2 405 161-614 19-655 (902)
10 1r5m_A SIR4-interacting protei 100.0 1.3E-34 4.5E-39 309.1 35.3 332 185-581 28-425 (425)
11 1pgu_A Actin interacting prote 100.0 5.2E-34 1.8E-38 320.3 41.7 415 160-614 19-608 (615)
12 3sfz_A APAF-1, apoptotic pepti 100.0 7E-35 2.4E-39 354.5 33.9 410 161-613 659-1242(1249)
13 3iz6_a 40S ribosomal protein R 100.0 9.6E-35 3.3E-39 305.7 29.4 288 193-582 56-376 (380)
14 2pbi_B Guanine nucleotide-bind 100.0 8.4E-34 2.9E-38 295.2 35.5 281 195-578 56-354 (354)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 9E-34 3.1E-38 294.1 35.1 293 195-582 7-336 (345)
16 4g56_B MGC81050 protein; prote 100.0 6.1E-34 2.1E-38 296.5 31.9 301 173-580 17-342 (357)
17 1gxr_A ESG1, transducin-like e 100.0 2E-33 6.8E-38 290.1 34.8 317 202-579 8-335 (337)
18 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-34 6.4E-39 334.9 29.4 361 200-614 14-599 (902)
19 2ynn_A Coatomer subunit beta'; 100.0 4.3E-33 1.5E-37 283.6 35.9 285 194-581 4-302 (304)
20 2pm9_A Protein WEB1, protein t 100.0 1.5E-34 5.2E-39 308.2 25.8 322 203-581 12-414 (416)
21 3frx_A Guanine nucleotide-bind 100.0 6.1E-33 2.1E-37 284.4 36.5 286 197-580 11-316 (319)
22 2xzm_R RACK1; ribosome, transl 100.0 7.2E-33 2.5E-37 287.1 36.7 291 196-580 14-339 (343)
23 1erj_A Transcriptional repress 100.0 3.4E-32 1.2E-36 287.6 39.9 289 201-580 62-388 (393)
24 3mkq_A Coatomer beta'-subunit; 100.0 4.9E-33 1.7E-37 323.3 36.3 356 194-614 4-417 (814)
25 4gqb_B Methylosome protein 50; 100.0 3.8E-33 1.3E-37 288.3 31.4 283 201-584 28-334 (344)
26 4ery_A WD repeat-containing pr 100.0 3.8E-32 1.3E-36 277.8 37.2 286 195-580 15-311 (312)
27 1pgu_A Actin interacting prote 100.0 5.8E-32 2E-36 303.7 37.3 359 161-581 162-614 (615)
28 3mkq_A Coatomer beta'-subunit; 100.0 3.1E-32 1.1E-36 316.6 35.2 388 162-614 16-454 (814)
29 2hes_X YDR267CP; beta-propelle 100.0 8.5E-32 2.9E-36 277.3 34.3 290 194-580 5-327 (330)
30 1vyh_C Platelet-activating fac 100.0 8.2E-32 2.8E-36 286.2 34.8 295 161-535 110-410 (410)
31 3vl1_A 26S proteasome regulato 100.0 1.5E-31 5E-36 285.6 33.7 320 204-580 57-418 (420)
32 3zwl_B Eukaryotic translation 100.0 1.3E-30 4.6E-35 272.4 39.6 295 197-582 26-347 (369)
33 2ynn_A Coatomer subunit beta'; 100.0 2.2E-31 7.5E-36 270.9 32.2 271 242-610 12-293 (304)
34 1gxr_A ESG1, transducin-like e 100.0 8.2E-31 2.8E-35 270.5 34.1 312 162-534 12-335 (337)
35 1got_B GT-beta; complex (GTP-b 100.0 2.2E-31 7.6E-36 275.5 29.8 270 242-614 54-337 (340)
36 1r5m_A SIR4-interacting protei 100.0 3E-31 1E-35 283.0 31.7 323 227-613 28-418 (425)
37 3ow8_A WD repeat-containing pr 100.0 6.5E-31 2.2E-35 269.4 32.8 264 173-535 49-320 (321)
38 4g56_B MGC81050 protein; prote 100.0 5.3E-32 1.8E-36 281.9 21.4 314 204-614 6-337 (357)
39 4aow_A Guanine nucleotide-bind 100.0 4.5E-30 1.5E-34 265.5 35.3 281 196-580 31-336 (340)
40 2pbi_B Guanine nucleotide-bind 100.0 2.3E-30 7.8E-35 269.3 32.8 271 242-614 63-351 (354)
41 3dm0_A Maltose-binding peripla 100.0 1.8E-30 6.3E-35 295.5 34.2 280 198-580 377-692 (694)
42 1k8k_C P40, ARP2/3 complex 41 100.0 2.6E-30 8.7E-35 270.9 32.2 296 199-580 4-360 (372)
43 1sq9_A Antiviral protein SKI8; 100.0 6.8E-30 2.3E-34 270.4 33.0 279 197-581 10-395 (397)
44 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.2E-30 7.6E-35 268.5 28.1 286 286-614 6-329 (345)
45 3iz6_a 40S ribosomal protein R 100.0 1.1E-30 3.7E-35 274.7 26.0 290 228-614 50-369 (380)
46 4gqb_B Methylosome protein 50; 100.0 7.8E-30 2.7E-34 263.5 31.3 278 159-538 30-333 (344)
47 3frx_A Guanine nucleotide-bind 100.0 6.5E-30 2.2E-34 261.9 30.0 268 243-614 17-311 (319)
48 3ei3_B DNA damage-binding prot 100.0 9.1E-30 3.1E-34 268.2 31.7 290 193-581 63-382 (383)
49 3k26_A Polycomb protein EED; W 100.0 3.6E-30 1.2E-34 268.9 26.3 312 199-580 14-365 (366)
50 4h5i_A Guanine nucleotide-exch 100.0 9.2E-30 3.1E-34 265.7 28.2 296 204-581 15-343 (365)
51 2pm9_A Protein WEB1, protein t 100.0 2.3E-30 8E-35 275.7 23.6 326 162-536 15-414 (416)
52 4e54_B DNA damage-binding prot 100.0 1.1E-29 3.8E-34 272.2 28.7 287 198-581 114-430 (435)
53 2xzm_R RACK1; ribosome, transl 100.0 1.7E-29 5.7E-34 261.8 27.8 270 243-614 21-334 (343)
54 2j04_B YDR362CP, TAU91; beta p 100.0 5E-30 1.7E-34 278.5 24.8 312 212-583 170-519 (524)
55 1erj_A Transcriptional repress 100.0 1E-28 3.6E-33 260.8 33.4 286 162-536 67-389 (393)
56 3vl1_A 26S proteasome regulato 100.0 1.4E-28 4.7E-33 262.5 34.3 320 165-536 62-419 (420)
57 3dwl_C Actin-related protein 2 100.0 6.5E-30 2.2E-34 268.6 23.1 298 199-579 7-377 (377)
58 3i2n_A WD repeat-containing pr 100.0 1.3E-28 4.5E-33 256.2 32.4 294 198-539 13-356 (357)
59 4ery_A WD repeat-containing pr 100.0 6.6E-29 2.3E-33 253.7 29.4 268 244-613 24-305 (312)
60 4a11_B DNA excision repair pro 100.0 8.2E-29 2.8E-33 262.7 30.6 314 185-582 26-366 (408)
61 4gga_A P55CDC, cell division c 100.0 2.6E-28 8.8E-33 260.4 34.2 278 204-581 106-395 (420)
62 3zwl_B Eukaryotic translation 100.0 1.4E-28 4.9E-33 257.0 31.1 284 242-614 30-340 (369)
63 3v7d_B Cell division control p 100.0 6.8E-28 2.3E-32 260.8 37.5 324 186-578 104-460 (464)
64 2hes_X YDR267CP; beta-propelle 100.0 1.2E-28 4E-33 253.9 29.5 279 236-614 5-322 (330)
65 3odt_A Protein DOA1; ubiquitin 100.0 4.9E-28 1.7E-32 246.9 33.3 277 193-582 8-297 (313)
66 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-27 4.4E-32 257.1 37.3 322 186-582 102-443 (445)
67 3gre_A Serine/threonine-protei 100.0 6.7E-29 2.3E-33 266.5 27.2 301 186-578 47-437 (437)
68 4aez_A CDC20, WD repeat-contai 100.0 3.9E-28 1.3E-32 257.3 32.4 276 200-582 88-381 (401)
69 3dw8_B Serine/threonine-protei 100.0 1.7E-28 5.7E-33 264.1 29.5 290 201-579 26-444 (447)
70 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-28 4.7E-33 257.7 27.8 284 238-614 3-355 (372)
71 4ggc_A P55CDC, cell division c 100.0 1.8E-27 6.1E-32 243.4 34.6 280 205-580 27-314 (318)
72 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-27 4.7E-32 248.4 33.8 301 186-580 3-335 (355)
73 2j04_A TAU60, YPL007P, hypothe 100.0 2.6E-30 9E-35 272.9 13.1 316 204-601 16-374 (588)
74 2pm7_B Protein transport prote 100.0 1.2E-27 4.1E-32 242.4 31.3 261 197-535 3-284 (297)
75 3dm0_A Maltose-binding peripla 100.0 4.5E-28 1.5E-32 275.8 30.2 273 242-614 381-687 (694)
76 3f3f_A Nucleoporin SEH1; struc 100.0 4.4E-27 1.5E-31 243.3 33.3 302 197-581 5-337 (351)
77 3bg1_A Protein SEC13 homolog; 100.0 1.4E-27 4.9E-32 244.1 28.8 265 198-535 8-292 (316)
78 2pm7_B Protein transport prote 100.0 3.4E-27 1.2E-31 239.1 31.0 242 243-580 9-284 (297)
79 1yfq_A Cell cycle arrest prote 100.0 2.3E-27 7.8E-32 245.4 29.6 274 199-573 7-315 (342)
80 3i2n_A WD repeat-containing pr 100.0 4.8E-27 1.6E-31 244.4 30.2 285 242-581 17-353 (357)
81 4aow_A Guanine nucleotide-bind 100.0 6E-27 2E-31 241.9 30.6 270 243-614 37-331 (340)
82 3k26_A Polycomb protein EED; W 100.0 3.3E-27 1.1E-31 246.4 28.7 292 161-535 20-365 (366)
83 3dwl_C Actin-related protein 2 100.0 1.2E-28 4E-33 259.0 16.9 249 238-580 6-280 (377)
84 4aez_A CDC20, WD repeat-contai 100.0 2.6E-26 8.8E-31 243.3 34.7 272 174-542 105-386 (401)
85 1sq9_A Antiviral protein SKI8; 100.0 6.1E-27 2.1E-31 247.6 29.3 288 162-537 19-396 (397)
86 3gre_A Serine/threonine-protei 100.0 3.6E-28 1.2E-32 260.8 19.5 308 208-614 32-434 (437)
87 3ei3_B DNA damage-binding prot 100.0 1.8E-26 6.2E-31 242.9 32.0 282 161-536 75-382 (383)
88 3dw8_B Serine/threonine-protei 100.0 2E-27 6.8E-32 255.7 24.6 305 244-609 29-436 (447)
89 4h5i_A Guanine nucleotide-exch 100.0 8.2E-27 2.8E-31 243.4 26.6 279 162-536 17-343 (365)
90 3bg1_A Protein SEC13 homolog; 100.0 7.7E-27 2.6E-31 238.7 25.7 242 243-580 13-292 (316)
91 3mmy_A MRNA export factor; mRN 100.0 8.5E-27 2.9E-31 243.4 25.5 295 191-536 27-349 (368)
92 3jrp_A Fusion protein of prote 100.0 2.4E-26 8.3E-31 241.1 28.7 254 194-488 2-288 (379)
93 3v7d_B Cell division control p 100.0 7.3E-26 2.5E-30 244.8 32.6 295 246-606 125-448 (464)
94 4gga_A P55CDC, cell division c 100.0 1.5E-25 5.2E-30 238.9 34.2 275 161-539 109-398 (420)
95 2j04_A TAU60, YPL007P, hypothe 99.9 1E-26 3.4E-31 245.7 24.3 294 244-610 16-351 (588)
96 3jrp_A Fusion protein of prote 99.9 5E-26 1.7E-30 238.7 29.1 244 241-580 9-286 (379)
97 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.6E-25 5.5E-30 241.0 33.7 278 204-580 5-390 (450)
98 4e54_B DNA damage-binding prot 99.9 1.5E-26 5.3E-31 247.8 25.5 290 162-539 122-433 (435)
99 2j04_B YDR362CP, TAU91; beta p 99.9 2.8E-26 9.5E-31 249.0 25.9 303 175-535 176-516 (524)
100 2ovr_B FBW7, F-BOX/WD repeat p 99.9 2.9E-25 9.9E-30 238.8 32.4 293 250-612 124-430 (445)
101 1k32_A Tricorn protease; prote 99.9 4.5E-25 1.5E-29 262.3 36.7 389 174-609 26-491 (1045)
102 3bws_A Protein LP49; two-domai 99.9 1.1E-24 3.6E-29 233.4 36.0 329 204-581 61-432 (433)
103 2aq5_A Coronin-1A; WD40 repeat 99.9 1.3E-25 4.6E-30 237.9 28.3 288 201-539 32-345 (402)
104 2xyi_A Probable histone-bindin 99.9 4E-25 1.4E-29 236.4 30.9 284 203-584 45-413 (430)
105 1l0q_A Surface layer protein; 99.9 2.1E-24 7.3E-29 227.7 35.9 267 174-542 4-281 (391)
106 4a11_B DNA excision repair pro 99.9 8.2E-25 2.8E-29 231.8 32.0 320 160-580 44-404 (408)
107 1p22_A F-BOX/WD-repeat protein 99.9 9.2E-25 3.1E-29 234.0 32.2 266 200-582 130-415 (435)
108 3odt_A Protein DOA1; ubiquitin 99.9 3.6E-25 1.2E-29 225.6 27.3 268 235-614 8-290 (313)
109 3mmy_A MRNA export factor; mRN 99.9 5.7E-25 2E-29 229.5 29.1 278 234-565 28-335 (368)
110 4ggc_A P55CDC, cell division c 99.9 5.9E-24 2E-28 217.2 34.1 266 175-537 38-316 (318)
111 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.5E-25 3.2E-29 231.7 29.1 310 203-602 62-410 (415)
112 2aq5_A Coronin-1A; WD40 repeat 99.9 3.7E-25 1.3E-29 234.5 25.4 267 178-488 53-343 (402)
113 1yfq_A Cell cycle arrest prote 99.9 3.9E-25 1.3E-29 228.6 25.0 274 244-613 12-316 (342)
114 3jro_A Fusion protein of prote 99.9 2.1E-25 7.3E-30 255.3 23.8 266 197-538 3-287 (753)
115 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.1E-24 1.4E-28 230.0 31.2 273 245-605 6-370 (450)
116 1l0q_A Surface layer protein; 99.9 2.6E-23 9E-28 219.3 35.5 266 216-582 3-276 (391)
117 4gq1_A NUP37; propeller, trans 99.9 9.8E-25 3.3E-29 230.2 21.7 262 205-581 91-389 (393)
118 2ecf_A Dipeptidyl peptidase IV 99.9 5E-23 1.7E-27 236.3 36.7 332 204-581 37-459 (741)
119 3jro_A Fusion protein of prote 99.9 2.6E-24 8.9E-29 246.3 25.0 243 242-580 8-284 (753)
120 1k32_A Tricorn protease; prote 99.9 3.9E-23 1.3E-27 245.6 35.8 354 162-580 55-501 (1045)
121 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.8E-23 2.7E-27 217.0 32.5 306 160-558 65-410 (415)
122 3bws_A Protein LP49; two-domai 99.9 1.5E-22 5.1E-27 216.6 33.9 290 198-536 118-432 (433)
123 3lrv_A PRE-mRNA-splicing facto 99.9 1.8E-23 6E-28 216.5 25.1 273 207-582 40-334 (343)
124 2ecf_A Dipeptidyl peptidase IV 99.9 4.2E-22 1.4E-26 228.7 38.5 341 162-537 39-460 (741)
125 1xfd_A DIP, dipeptidyl aminope 99.9 1.4E-23 4.6E-28 240.4 25.6 332 205-565 18-429 (723)
126 1nir_A Nitrite reductase; hemo 99.9 1.1E-21 3.8E-26 214.6 39.4 333 210-587 144-521 (543)
127 2xyi_A Probable histone-bindin 99.9 5.8E-23 2E-27 219.6 28.5 250 198-537 123-411 (430)
128 1nir_A Nitrite reductase; hemo 99.9 1.3E-22 4.5E-27 222.0 31.8 357 166-559 144-533 (543)
129 2z3z_A Dipeptidyl aminopeptida 99.9 4.8E-22 1.6E-26 226.8 37.1 333 205-582 27-436 (706)
130 3vu4_A KMHSV2; beta-propeller 99.9 1.2E-22 4.3E-27 210.9 27.5 277 228-613 3-329 (355)
131 3f3f_A Nucleoporin SEH1; struc 99.9 3.7E-22 1.3E-26 206.1 29.5 296 161-489 13-339 (351)
132 2w18_A PALB2, fancn, partner a 99.9 3.1E-22 1.1E-26 198.6 25.9 276 167-579 48-355 (356)
133 1p22_A F-BOX/WD-repeat protein 99.9 6.1E-22 2.1E-26 212.0 29.5 277 173-554 144-433 (435)
134 2z3z_A Dipeptidyl aminopeptida 99.9 3.1E-21 1E-25 220.1 36.4 326 174-538 37-437 (706)
135 3u4y_A Uncharacterized protein 99.9 2.7E-20 9.1E-25 191.3 35.2 288 249-587 3-310 (331)
136 3lrv_A PRE-mRNA-splicing facto 99.9 3.5E-21 1.2E-25 199.1 28.6 255 174-485 50-331 (343)
137 1xfd_A DIP, dipeptidyl aminope 99.9 7E-21 2.4E-25 217.9 32.4 342 168-537 25-444 (723)
138 4gq1_A NUP37; propeller, trans 99.9 6.3E-22 2.1E-26 208.7 20.7 254 174-535 103-388 (393)
139 2w18_A PALB2, fancn, partner a 99.9 1.7E-21 5.8E-26 193.3 22.1 282 234-614 24-351 (356)
140 3pe7_A Oligogalacturonate lyas 99.9 2.9E-21 9.9E-26 203.3 24.9 307 186-580 13-381 (388)
141 2ojh_A Uncharacterized protein 99.9 3.4E-20 1.2E-24 186.6 29.5 252 275-565 22-291 (297)
142 1z68_A Fibroblast activation p 99.9 3.8E-21 1.3E-25 219.8 23.8 341 207-580 19-442 (719)
143 3vgz_A Uncharacterized protein 99.9 8.9E-20 3E-24 189.1 31.1 279 244-565 41-333 (353)
144 1pby_B Quinohemoprotein amine 99.9 7.6E-20 2.6E-24 188.1 29.4 281 216-543 2-317 (337)
145 1z68_A Fibroblast activation p 99.9 6.6E-20 2.3E-24 209.5 31.2 341 169-540 25-447 (719)
146 4a5s_A Dipeptidyl peptidase 4 99.9 8E-20 2.7E-24 209.0 31.8 359 205-605 18-431 (740)
147 3u4y_A Uncharacterized protein 99.9 2.5E-19 8.6E-24 184.0 31.8 281 167-539 5-307 (331)
148 1ri6_A Putative isomerase YBHE 99.9 4.8E-19 1.6E-23 182.6 33.4 294 175-514 8-334 (343)
149 1ri6_A Putative isomerase YBHE 99.9 1.7E-18 5.9E-23 178.4 35.1 288 275-602 15-335 (343)
150 2ojh_A Uncharacterized protein 99.8 2.5E-19 8.5E-24 180.2 26.7 253 223-522 20-291 (297)
151 3c5m_A Oligogalacturonate lyas 99.8 1E-19 3.5E-24 191.9 21.6 324 187-579 14-380 (396)
152 3vgz_A Uncharacterized protein 99.8 4.4E-18 1.5E-22 176.2 31.4 274 204-522 41-333 (353)
153 1jmx_B Amine dehydrogenase; ox 99.8 4.1E-18 1.4E-22 176.1 30.7 293 207-542 3-331 (349)
154 4a5s_A Dipeptidyl peptidase 4 99.8 1.2E-17 4.1E-22 190.9 36.9 362 174-580 29-448 (740)
155 3o4h_A Acylamino-acid-releasin 99.8 3.2E-19 1.1E-23 198.5 23.2 276 203-581 21-315 (582)
156 1pby_B Quinohemoprotein amine 99.8 4.9E-18 1.7E-22 174.5 27.5 263 174-489 3-312 (337)
157 3hfq_A Uncharacterized protein 99.8 4.2E-17 1.4E-21 168.6 33.4 266 225-580 17-316 (347)
158 3o4h_A Acylamino-acid-releasin 99.8 1.4E-18 4.8E-23 193.3 21.6 261 245-610 23-302 (582)
159 3pe7_A Oligogalacturonate lyas 99.8 5.9E-18 2E-22 177.9 22.1 314 229-608 15-369 (388)
160 3scy_A Hypothetical bacterial 99.8 6E-16 2E-20 160.9 34.9 300 213-554 11-360 (361)
161 3hfq_A Uncharacterized protein 99.8 2.6E-16 8.8E-21 162.7 30.8 255 201-487 37-317 (347)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.5E-16 1.2E-20 162.9 31.7 251 245-584 41-344 (365)
163 3c5m_A Oligogalacturonate lyas 99.8 7.8E-18 2.7E-22 177.4 18.7 300 246-609 38-370 (396)
164 3scy_A Hypothetical bacterial 99.8 1.9E-15 6.3E-20 157.2 35.4 299 251-598 9-360 (361)
165 1jmx_B Amine dehydrogenase; ox 99.7 4.3E-16 1.5E-20 160.8 28.0 270 248-581 4-325 (349)
166 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.4E-15 4.8E-20 158.3 30.6 251 204-488 40-342 (365)
167 2oiz_A Aromatic amine dehydrog 99.7 7.5E-16 2.6E-20 159.7 25.8 288 181-558 30-360 (361)
168 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-13 4.8E-18 150.0 42.4 327 213-584 165-541 (567)
169 2oit_A Nucleoporin 214KDA; NH2 99.7 1.7E-15 5.8E-20 161.0 26.1 149 204-382 37-219 (434)
170 2oiz_A Aromatic amine dehydrog 99.7 4E-14 1.4E-18 146.7 33.3 312 213-602 13-360 (361)
171 1qks_A Cytochrome CD1 nitrite 99.7 4.1E-13 1.4E-17 146.3 37.4 350 165-545 161-547 (567)
172 2oit_A Nucleoporin 214KDA; NH2 99.6 1.3E-14 4.4E-19 154.2 24.2 162 202-389 91-279 (434)
173 3azo_A Aminopeptidase; POP fam 99.6 5.8E-14 2E-18 158.6 29.7 259 181-473 46-354 (662)
174 2gop_A Trilobed protease; beta 99.6 7.5E-14 2.6E-18 144.0 27.9 281 243-580 14-330 (347)
175 2gop_A Trilobed protease; beta 99.6 9.7E-14 3.3E-18 143.2 28.6 270 204-535 15-330 (347)
176 3azo_A Aminopeptidase; POP fam 99.6 3.3E-14 1.1E-18 160.6 26.6 296 197-540 17-373 (662)
177 2nlw_A Eukaryotic translation 99.6 1.2E-15 4.1E-20 126.5 8.0 92 49-142 5-104 (105)
178 2xdw_A Prolyl endopeptidase; a 99.6 2.1E-12 7.2E-17 146.8 34.1 289 213-538 81-416 (710)
179 4fxv_A ELAV-like protein 1; RN 99.6 7.9E-15 2.7E-19 119.6 9.5 75 59-134 19-95 (99)
180 2xdw_A Prolyl endopeptidase; a 99.6 1.7E-12 5.8E-17 147.6 31.8 253 313-581 129-414 (710)
181 3ns6_A Eukaryotic translation 99.6 2.6E-15 9E-20 123.1 5.8 88 55-142 2-97 (100)
182 2bkl_A Prolyl endopeptidase; m 99.6 5.7E-13 2E-17 151.0 27.1 286 211-581 75-397 (695)
183 2dg1_A DRP35, lactonase; beta 99.5 3.9E-12 1.3E-16 130.3 29.8 269 204-565 6-299 (333)
184 2mad_H Methylamine dehydrogena 99.5 8.2E-12 2.8E-16 129.4 32.0 283 169-542 30-356 (373)
185 3sjl_D Methylamine dehydrogena 99.5 8.2E-13 2.8E-17 134.8 22.9 300 166-556 39-384 (386)
186 3fvz_A Peptidyl-glycine alpha- 99.5 2.2E-12 7.7E-17 131.8 26.0 258 245-582 25-323 (329)
187 2bkl_A Prolyl endopeptidase; m 99.5 1.1E-12 3.6E-17 148.9 23.6 256 201-489 118-399 (695)
188 2lkz_A RNA-binding protein 5; 99.5 3.3E-14 1.1E-18 114.3 7.9 75 60-135 10-92 (95)
189 3dsm_A Uncharacterized protein 99.5 8.3E-12 2.9E-16 127.4 26.9 274 225-598 18-320 (328)
190 3s8s_A Histone-lysine N-methyl 99.5 8.7E-14 3E-18 115.7 9.6 77 59-136 6-84 (110)
191 2lxi_A RNA-binding protein 10; 99.5 3.1E-14 1.1E-18 114.2 6.1 75 59-134 1-79 (91)
192 3c75_H MADH, methylamine dehyd 99.5 6.5E-12 2.2E-16 130.7 24.8 303 213-556 82-423 (426)
193 1yr2_A Prolyl oligopeptidase; 99.5 2.3E-11 8E-16 138.8 31.7 288 212-539 115-444 (741)
194 2krb_A Eukaryotic translation 99.5 2E-14 7E-19 112.9 4.3 73 59-133 1-81 (81)
195 1q7f_A NHL, brain tumor CG1071 99.5 3.6E-11 1.2E-15 120.1 29.2 236 245-580 31-279 (286)
196 3sjl_D Methylamine dehydrogena 99.5 2.2E-11 7.6E-16 124.3 26.9 297 249-600 38-384 (386)
197 3e5z_A Putative gluconolactona 99.4 3.8E-11 1.3E-15 120.7 27.8 243 202-541 26-291 (296)
198 1q7f_A NHL, brain tumor CG1071 99.4 3.7E-11 1.3E-15 120.0 27.5 236 201-536 27-280 (286)
199 2mad_H Methylamine dehydrogena 99.4 2.5E-10 8.6E-15 118.2 34.0 284 249-586 26-356 (373)
200 3p5t_L Cleavage and polyadenyl 99.4 1.2E-13 4.2E-18 110.8 6.7 73 61-134 3-79 (90)
201 2dg1_A DRP35, lactonase; beta 99.4 6.4E-12 2.2E-16 128.7 20.7 268 243-606 5-296 (333)
202 1yr2_A Prolyl oligopeptidase; 99.4 5.5E-11 1.9E-15 135.7 29.8 252 313-581 167-441 (741)
203 2wbr_A GW182, gawky, LD47780P; 99.4 2.9E-13 9.8E-18 103.8 6.7 71 59-136 7-79 (89)
204 3fvz_A Peptidyl-glycine alpha- 99.4 5.1E-11 1.8E-15 121.7 25.2 247 203-536 23-322 (329)
205 2la6_A RNA-binding protein FUS 99.4 1.3E-12 4.3E-17 107.1 10.4 76 58-134 12-97 (99)
206 3bs9_A Nucleolysin TIA-1 isofo 99.4 1E-12 3.5E-17 104.9 9.6 75 59-134 6-82 (87)
207 3md1_A Nuclear and cytoplasmic 99.4 1.2E-12 4.1E-17 103.4 9.8 75 60-135 2-78 (83)
208 3c75_H MADH, methylamine dehyd 99.4 5.9E-11 2E-15 123.5 25.3 293 253-600 82-423 (426)
209 2j8a_A Histone-lysine N-methyl 99.4 5.1E-13 1.8E-17 109.5 7.4 78 59-137 2-95 (136)
210 3dsm_A Uncharacterized protein 99.4 1.6E-10 5.6E-15 117.8 28.0 277 174-542 4-307 (328)
211 3mdf_A Peptidyl-prolyl CIS-tra 99.4 9.5E-13 3.3E-17 104.5 8.6 75 59-134 7-83 (85)
212 2x1f_A MRNA 3'-END-processing 99.4 1.1E-12 3.8E-17 106.7 9.0 77 59-136 2-80 (96)
213 4f25_A Polyadenylate-binding p 99.4 1.2E-12 4.1E-17 110.3 9.3 75 59-136 5-81 (115)
214 3e5z_A Putative gluconolactona 99.4 2.5E-10 8.5E-15 114.6 28.0 245 313-587 32-292 (296)
215 3n9u_C Cleavage and polyadenyl 99.4 1.3E-12 4.6E-17 116.0 9.2 76 59-135 55-134 (156)
216 1whw_A Hypothetical protein ri 99.4 1.5E-12 5.2E-17 106.7 8.8 77 59-136 8-86 (99)
217 2dnz_A Probable RNA-binding pr 99.4 1.8E-12 6.2E-17 105.3 9.0 76 59-135 5-82 (95)
218 2cpe_A RNA-binding protein EWS 99.4 3E-12 1E-16 107.8 10.6 76 59-135 15-100 (113)
219 2cq0_A Eukaryotic translation 99.4 2.1E-12 7.1E-17 106.7 9.3 76 59-135 15-92 (103)
220 1x5t_A Splicing factor 3B subu 99.4 1.5E-12 5.1E-17 106.1 8.2 76 59-135 5-83 (96)
221 2cqc_A Arginine/serine-rich sp 99.4 2E-12 6.8E-17 105.1 8.8 76 59-135 15-92 (95)
222 1s79_A Lupus LA protein; RRM, 99.4 1E-12 3.6E-17 107.6 7.0 76 59-137 11-88 (103)
223 1p27_B RNA-binding protein 8A; 99.3 2.6E-12 8.8E-17 106.8 9.3 76 58-134 22-99 (106)
224 2ek1_A RNA-binding protein 12; 99.3 1.8E-12 6.1E-17 105.4 8.0 76 59-135 15-92 (95)
225 2jrs_A RNA-binding protein 39; 99.3 5.3E-12 1.8E-16 104.8 10.9 76 58-134 25-102 (108)
226 2cqb_A Peptidyl-prolyl CIS-tra 99.3 1.7E-12 5.8E-17 107.1 7.7 77 59-136 12-90 (102)
227 2div_A TRNA selenocysteine ass 99.3 2E-12 6.9E-17 105.9 7.9 77 58-134 8-90 (99)
228 2e5h_A Zinc finger CCHC-type a 99.3 1.7E-12 6E-17 105.2 7.3 75 59-134 16-92 (94)
229 2cqp_A RNA-binding protein 12; 99.3 2.3E-12 7.7E-17 105.4 8.0 76 59-135 15-92 (98)
230 1x5s_A Cold-inducible RNA-bind 99.3 2.4E-12 8.2E-17 106.1 8.2 77 59-136 12-90 (102)
231 3no2_A Uncharacterized protein 99.3 4.2E-10 1.4E-14 111.4 26.0 219 253-565 3-232 (276)
232 2fy1_A RNA-binding motif prote 99.3 3.8E-12 1.3E-16 107.3 9.5 78 57-136 5-84 (116)
233 1x5u_A Splicing factor 3B subu 99.3 2.9E-12 1E-16 106.3 8.6 77 58-135 14-92 (105)
234 2dgs_A DAZ-associated protein 99.3 3E-12 1E-16 104.9 8.6 75 59-135 10-86 (99)
235 2cpz_A CUG triplet repeat RNA- 99.3 3.2E-12 1.1E-16 107.9 9.0 76 59-135 25-102 (115)
236 1oo0_B CG8781-PA, drosophila Y 99.3 4E-12 1.4E-16 106.4 9.5 76 58-134 25-102 (110)
237 1wez_A HnRNP H', FTP-3, hetero 99.3 1.7E-12 5.9E-17 106.3 7.0 73 59-134 15-88 (102)
238 2dnm_A SRP46 splicing factor; 99.3 2.3E-12 7.8E-17 106.5 7.8 77 59-136 13-91 (103)
239 2mss_A Protein (musashi1); RNA 99.3 1.6E-12 5.6E-17 100.3 6.4 71 61-133 1-73 (75)
240 2do4_A Squamous cell carcinoma 99.3 4.2E-12 1.5E-16 104.2 9.1 75 59-135 17-93 (100)
241 3s7r_A Heterogeneous nuclear r 99.3 5.6E-12 1.9E-16 100.5 9.3 74 59-134 11-86 (87)
242 2dgo_A Cytotoxic granule-assoc 99.3 1.5E-11 5.2E-16 103.8 12.4 77 59-136 15-93 (115)
243 2ywk_A Putative RNA-binding pr 99.3 4.7E-12 1.6E-16 102.9 8.7 74 59-134 16-91 (95)
244 2dgp_A Bruno-like 4, RNA bindi 99.3 4.5E-12 1.5E-16 105.3 8.8 77 59-136 13-94 (106)
245 1rwi_B Serine/threonine-protei 99.3 3.4E-10 1.2E-14 111.8 24.1 237 245-583 25-266 (270)
246 3ulh_A THO complex subunit 4; 99.3 6E-12 2.1E-16 104.8 9.4 75 58-134 28-104 (107)
247 1x4e_A RNA binding motif, sing 99.3 1.5E-12 5.2E-17 103.3 5.4 69 59-127 5-75 (85)
248 3ucg_A Polyadenylate-binding p 99.3 3.3E-12 1.1E-16 102.4 7.5 74 59-134 6-81 (89)
249 2z2n_A Virginiamycin B lyase; 99.3 1.3E-08 4.3E-13 101.9 35.8 275 201-537 12-296 (299)
250 4a8x_A RNA-binding protein wit 99.3 3.3E-12 1.1E-16 102.2 7.3 76 59-135 4-82 (88)
251 1p1t_A Cleavage stimulation fa 99.3 3.8E-12 1.3E-16 105.4 8.0 77 59-136 8-86 (104)
252 1uaw_A Mouse-musashi-1; RNP-ty 99.3 2.2E-12 7.4E-17 100.2 6.1 73 60-134 1-75 (77)
253 2cpf_A RNA binding motif prote 99.3 3.5E-12 1.2E-16 104.3 7.4 76 59-135 5-85 (98)
254 2dnn_A RNA-binding protein 12; 99.3 4.8E-12 1.6E-16 104.4 8.1 75 59-136 16-91 (109)
255 2dnh_A Bruno-like 5, RNA bindi 99.3 6E-12 2E-16 104.4 8.8 76 59-135 15-94 (105)
256 1x4h_A RNA-binding protein 28; 99.3 9.3E-12 3.2E-16 104.4 10.0 77 59-136 15-99 (111)
257 2dng_A Eukaryotic translation 99.3 7.4E-12 2.5E-16 103.3 9.0 75 59-135 15-90 (103)
258 2dgw_A Probable RNA-binding pr 99.3 9.7E-12 3.3E-16 100.0 9.4 75 59-136 10-85 (91)
259 2hgl_A HNRPF protein, heteroge 99.3 4.9E-12 1.7E-16 108.9 8.1 74 59-135 44-122 (136)
260 2fc8_A NCL protein; structure 99.3 8.3E-12 2.8E-16 102.9 9.1 75 58-135 14-89 (102)
261 2kxn_B Transformer-2 protein h 99.3 3.6E-12 1.2E-16 109.5 6.9 75 59-134 46-122 (129)
262 2m2b_A RNA-binding protein 10; 99.3 3.5E-12 1.2E-16 110.3 6.7 75 59-135 23-105 (131)
263 1rwi_B Serine/threonine-protei 99.3 7.4E-10 2.5E-14 109.3 24.5 236 205-539 25-267 (270)
264 2cph_A RNA binding motif prote 99.3 6.5E-12 2.2E-16 104.6 8.0 76 59-135 15-94 (107)
265 2khc_A Testis-specific RNP-typ 99.3 5.4E-12 1.9E-16 107.1 7.5 75 58-133 39-115 (118)
266 2db1_A Heterogeneous nuclear r 99.3 8.3E-12 2.9E-16 105.5 8.5 75 59-136 17-96 (118)
267 2ki2_A SS-DNA binding protein 99.3 1.9E-12 6.4E-17 104.0 4.2 73 60-134 2-76 (90)
268 2dhg_A TRNA selenocysteine ass 99.3 6.4E-12 2.2E-16 104.0 7.5 74 58-133 8-85 (104)
269 2cq4_A RNA binding motif prote 99.3 6.8E-12 2.3E-16 105.7 7.6 76 59-136 25-102 (114)
270 2fc9_A NCL protein; structure 99.3 8.6E-12 3E-16 102.5 8.1 75 58-136 14-89 (101)
271 2d9p_A Polyadenylate-binding p 99.3 9.5E-12 3.3E-16 102.7 8.3 74 59-135 15-90 (103)
272 1u6f_A Tcubp1, RNA-binding pro 99.3 1.4E-11 4.9E-16 108.0 9.8 78 58-136 41-120 (139)
273 2kt5_A RNA and export factor-b 99.3 3.7E-11 1.3E-15 102.9 11.7 78 57-136 33-112 (124)
274 2do0_A HnRNP M, heterogeneous 99.3 3.2E-11 1.1E-15 101.6 11.2 75 59-135 15-91 (114)
275 2dgx_A KIAA0430 protein; RRM d 99.3 9.4E-12 3.2E-16 101.0 7.5 73 59-135 9-87 (96)
276 3ex7_B RNA-binding protein 8A; 99.3 1.2E-11 3.9E-16 106.5 8.5 75 59-134 22-98 (126)
277 1h2v_Z 20 kDa nuclear CAP bind 99.3 1.8E-11 6.3E-16 109.5 10.2 78 58-136 38-117 (156)
278 1xip_A Nucleoporin NUP159; bet 99.3 6.2E-10 2.1E-14 114.1 22.8 175 205-420 39-234 (388)
279 2z2n_A Virginiamycin B lyase; 99.3 2.5E-08 8.7E-13 99.7 34.6 270 244-581 15-295 (299)
280 2dha_A FLJ20171 protein; RRM d 99.3 8.1E-12 2.8E-16 105.4 7.2 75 57-134 21-101 (123)
281 1wi8_A EIF-4B, eukaryotic tran 99.3 1.1E-11 3.8E-16 102.5 7.8 75 59-135 15-91 (104)
282 2cpi_A CCR4-NOT transcription 99.2 7.8E-12 2.7E-16 104.6 6.8 75 59-134 15-97 (111)
283 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 4.7E-09 1.6E-13 106.0 28.9 240 244-580 18-298 (314)
284 1iqt_A AUF1, heterogeneous nuc 99.2 4E-12 1.4E-16 98.1 4.6 71 61-133 1-73 (75)
285 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 1.2E-11 4.2E-16 108.7 8.3 74 59-133 63-138 (140)
286 2dgv_A HnRNP M, heterogeneous 99.2 1.5E-11 5.3E-16 99.1 8.2 73 59-134 8-82 (92)
287 1wg5_A Heterogeneous nuclear r 99.2 1E-11 3.4E-16 102.5 6.9 74 59-135 15-91 (104)
288 2cpy_A RNA-binding protein 12; 99.2 8.9E-12 3.1E-16 104.8 6.7 75 59-136 15-92 (114)
289 2j76_E EIF-4B, EIF4B, eukaryot 99.2 8.8E-12 3E-16 102.1 6.3 78 55-134 15-94 (100)
290 2lmi_A GRSF-1, G-rich sequence 99.2 1.1E-11 3.8E-16 102.9 6.8 74 58-134 10-88 (107)
291 2dh8_A DAZ-associated protein 99.2 1E-11 3.5E-16 102.9 6.4 74 59-134 16-91 (105)
292 2rs2_A Musashi-1, RNA-binding 99.2 1.2E-11 4.1E-16 102.9 6.8 75 59-135 25-101 (109)
293 1rk8_A CG8781-PA, CG8781-PA pr 99.2 2.7E-11 9.1E-16 109.4 9.5 76 58-134 71-148 (165)
294 1fwx_A Nitrous oxide reductase 99.2 1E-09 3.5E-14 116.5 23.1 290 247-602 88-456 (595)
295 3r27_A HnRNP L, heterogeneous 99.2 2.3E-11 7.8E-16 97.4 7.9 70 58-134 20-93 (100)
296 1sjq_A Polypyrimidine tract-bi 99.2 1.3E-11 4.4E-16 99.9 6.5 69 59-134 16-88 (105)
297 2cqd_A RNA-binding region cont 99.2 2.1E-11 7.3E-16 103.0 8.2 75 59-135 17-93 (116)
298 2hgm_A HNRPF protein, heteroge 99.2 8.5E-12 2.9E-16 105.4 5.6 74 58-134 41-117 (126)
299 3iuj_A Prolyl endopeptidase; h 99.2 8.1E-10 2.8E-14 124.8 23.6 254 245-539 130-408 (693)
300 1x4b_A Heterogeneous nuclear r 99.2 1.9E-11 6.5E-16 103.3 7.6 76 59-136 27-104 (116)
301 3q2s_C Cleavage and polyadenyl 99.2 1.4E-11 4.8E-16 117.2 7.3 77 58-135 67-147 (229)
302 2jwn_A Embryonic polyadenylate 99.2 1.8E-11 6.2E-16 104.9 7.3 74 59-134 36-111 (124)
303 2kn4_A Immunoglobulin G-bindin 99.2 2.2E-11 7.5E-16 109.5 8.2 77 58-135 69-147 (158)
304 2err_A Ataxin-2-binding protei 99.2 2.6E-11 8.9E-16 100.9 7.9 73 59-134 29-103 (109)
305 1x5o_A RNA binding motif, sing 99.2 6.7E-11 2.3E-15 99.6 10.5 68 59-127 25-94 (114)
306 1wel_A RNA-binding protein 12; 99.2 1.1E-11 3.8E-16 106.0 5.8 77 58-136 24-102 (124)
307 2cqi_A Nucleolysin TIAR; RNA r 99.2 5.1E-11 1.8E-15 98.3 9.5 75 59-136 15-91 (103)
308 3iuj_A Prolyl endopeptidase; h 99.2 1.3E-09 4.5E-14 123.1 24.2 251 313-581 133-405 (693)
309 2dis_A Unnamed protein product 99.2 2.2E-11 7.5E-16 101.7 7.1 77 59-136 8-90 (109)
310 2cqg_A TDP-43, TAR DNA-binding 99.2 5.8E-11 2E-15 97.9 9.5 75 59-136 15-91 (103)
311 2lea_A Serine/arginine-rich sp 99.2 1.1E-11 3.8E-16 107.4 5.4 75 59-134 47-123 (135)
312 1mda_H Methylamine dehydrogena 99.2 1E-09 3.6E-14 112.2 20.7 287 225-598 47-365 (368)
313 2a3j_A U1 small nuclear ribonu 99.2 2.6E-11 8.9E-16 103.0 7.1 73 59-135 29-107 (127)
314 2cq3_A RNA-binding protein 9; 99.2 6.1E-11 2.1E-15 97.8 8.9 74 59-135 15-90 (103)
315 1fj7_A Nucleolin RBD1, protein 99.2 1.1E-11 3.6E-16 102.0 4.1 73 59-134 17-91 (101)
316 2ece_A 462AA long hypothetical 99.2 4.3E-08 1.5E-12 100.6 31.2 238 315-564 88-399 (462)
317 2hgn_A Heterogeneous nuclear r 99.2 8.8E-12 3E-16 107.6 3.4 74 58-134 45-119 (139)
318 2jvr_A Nucleolar protein 3; RN 99.2 4.2E-11 1.4E-15 99.0 7.3 72 59-135 28-102 (111)
319 2xs2_A Deleted in azoospermia- 99.2 2.8E-11 9.6E-16 99.6 6.1 74 59-136 9-84 (102)
320 1fjc_A Nucleolin RBD2, protein 99.2 4.2E-11 1.4E-15 97.3 7.0 72 59-135 16-88 (96)
321 1mda_H Methylamine dehydrogena 99.2 2.8E-09 9.5E-14 109.1 22.1 288 174-555 34-366 (368)
322 3no2_A Uncharacterized protein 99.2 1E-08 3.4E-13 101.4 25.3 188 175-394 8-201 (276)
323 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 5.7E-08 1.9E-12 98.0 31.6 244 205-536 19-299 (314)
324 2cpx_A Hypothetical protein FL 99.2 2.3E-11 7.7E-16 102.8 5.1 78 58-136 24-103 (115)
325 2f3j_A RNA and export factor b 99.1 8E-11 2.7E-15 107.0 8.7 78 57-136 86-165 (177)
326 2e5j_A Methenyltetrahydrofolat 99.1 7.7E-11 2.6E-15 95.9 7.6 76 55-135 15-91 (97)
327 3g4e_A Regucalcin; six bladed 99.1 5.2E-08 1.8E-12 97.6 30.1 232 313-565 17-261 (297)
328 1x4a_A Splicing factor, argini 99.1 1.2E-10 4.2E-15 97.0 8.9 74 58-135 21-96 (109)
329 2dnl_A Cytoplasmic polyadenyla 99.1 6.4E-11 2.2E-15 99.5 7.2 72 59-133 8-83 (114)
330 2ad9_A Polypyrimidine tract-bi 99.1 8.2E-11 2.8E-15 97.9 7.6 69 59-134 31-103 (119)
331 3lqv_A PRE-mRNA branch site pr 99.1 8.6E-11 3E-15 99.1 7.9 76 58-137 7-84 (115)
332 2lcw_A RNA-binding protein FUS 98.7 4.7E-12 1.6E-16 107.1 0.0 76 59-135 7-92 (116)
333 3g4e_A Regucalcin; six bladed 99.1 3.4E-08 1.1E-12 99.0 28.3 230 207-522 16-261 (297)
334 2cq1_A PTB-like protein L; RRM 99.1 1.1E-10 3.7E-15 94.8 7.7 70 59-135 15-88 (101)
335 2qc5_A Streptogramin B lactona 99.1 2.8E-07 9.5E-12 92.0 34.8 257 244-561 20-287 (300)
336 4f02_A Polyadenylate-binding p 99.1 1.6E-10 5.5E-15 109.4 9.6 75 59-134 15-91 (213)
337 1x4f_A Matrin 3; structural ge 99.1 1.7E-10 5.8E-15 94.8 8.4 73 58-137 24-101 (112)
338 2qc5_A Streptogramin B lactona 99.1 2.6E-07 9E-12 92.2 33.9 269 203-534 19-298 (300)
339 1wex_A Hypothetical protein (r 99.1 1.1E-10 3.7E-15 95.5 6.6 69 59-134 15-87 (104)
340 2hvz_A Splicing factor, argini 99.1 1.1E-10 3.9E-15 95.7 6.8 72 60-137 1-74 (101)
341 1whx_A Hypothetical protein ri 99.1 1.1E-10 3.8E-15 97.3 6.7 70 59-135 10-81 (111)
342 1wg1_A KIAA1579 protein, homol 99.1 1.3E-10 4.6E-15 92.4 6.8 68 59-134 5-74 (88)
343 1nu4_A U1A RNA binding domain; 99.1 7.6E-11 2.6E-15 96.1 5.3 74 58-135 7-86 (97)
344 1x4c_A Splicing factor, argini 99.1 2.3E-10 8E-15 95.0 8.3 71 58-136 14-91 (108)
345 1fxl_A Paraneoplastic encephal 99.1 2.9E-10 9.9E-15 103.3 9.5 75 59-134 2-78 (167)
346 2pe8_A Splicing factor 45; RRM 99.1 4.6E-10 1.6E-14 91.9 9.5 82 58-141 7-96 (105)
347 2cq2_A Hypothetical protein LO 99.1 1.7E-10 6E-15 94.7 6.9 71 58-134 24-102 (114)
348 1x4d_A Matrin 3; structural ge 99.1 1.7E-10 5.7E-15 93.5 6.4 74 58-138 14-92 (102)
349 3dr2_A Exported gluconolactona 99.1 5.8E-08 2E-12 97.7 26.5 224 206-475 47-298 (305)
350 3hrp_A Uncharacterized protein 99.1 7.7E-08 2.6E-12 100.9 28.3 234 245-534 132-408 (409)
351 1b7f_A Protein (SXL-lethal pro 99.1 3E-10 1E-14 103.4 8.3 75 59-134 3-79 (168)
352 3pgw_S U1-70K; protein-RNA com 99.0 3.8E-10 1.3E-14 118.0 9.8 77 58-135 101-179 (437)
353 1x4g_A Nucleolysin TIAR; struc 99.0 3.6E-10 1.2E-14 94.2 7.6 72 58-136 24-97 (109)
354 2jvo_A Nucleolar protein 3; nu 99.0 4.5E-10 1.5E-14 93.0 8.2 67 59-134 31-99 (108)
355 2ece_A 462AA long hypothetical 99.0 2.4E-07 8.4E-12 95.0 30.0 243 248-521 86-399 (462)
356 2g4b_A Splicing factor U2AF 65 99.0 3.5E-10 1.2E-14 103.3 8.3 75 59-134 94-170 (172)
357 3egn_A RNA-binding protein 40; 99.0 8.2E-11 2.8E-15 103.5 3.9 77 58-135 44-127 (143)
358 1why_A Hypothetical protein ri 99.0 3.3E-10 1.1E-14 92.1 7.2 70 59-134 17-89 (97)
359 2dnq_A RNA-binding protein 4B; 99.0 4E-10 1.4E-14 90.2 7.4 68 59-135 8-77 (90)
360 2hzc_A Splicing factor U2AF 65 99.0 3.1E-10 1E-14 90.3 6.6 68 59-134 6-86 (87)
361 3md3_A Nuclear and cytoplasmic 99.0 7.5E-10 2.5E-14 100.4 10.1 76 58-134 86-163 (166)
362 2cpj_A Non-POU domain-containi 99.0 3.8E-10 1.3E-14 92.2 7.2 71 59-136 15-87 (99)
363 2la4_A Nuclear and cytoplasmic 99.0 2.8E-10 9.5E-15 93.4 6.3 69 58-133 26-96 (101)
364 3dr2_A Exported gluconolactona 99.0 8.4E-08 2.9E-12 96.5 26.0 232 313-565 49-296 (305)
365 1fxl_A Paraneoplastic encephal 99.0 1.1E-09 3.7E-14 99.4 9.4 76 58-133 87-165 (167)
366 3beg_B Splicing factor, argini 99.0 5.1E-10 1.8E-14 94.0 6.6 62 59-127 16-79 (115)
367 2qfj_A FBP-interacting repress 99.0 1E-09 3.5E-14 104.4 9.4 77 57-134 123-201 (216)
368 2ghs_A AGR_C_1268P; regucalcin 99.0 3E-07 1E-11 93.3 28.4 226 207-522 52-291 (326)
369 2voo_A Lupus LA protein; RNA-b 99.0 9.5E-10 3.2E-14 101.5 8.7 76 59-137 109-186 (193)
370 3zzy_A Polypyrimidine tract-bi 99.0 1E-09 3.6E-14 92.3 8.0 69 60-133 29-101 (130)
371 1sjr_A Polypyrimidine tract-bi 99.0 1E-09 3.6E-14 96.0 8.2 71 60-134 47-120 (164)
372 2i2y_A Fusion protein consists 99.0 7.1E-10 2.4E-14 98.4 7.3 71 58-134 72-144 (150)
373 1b7f_A Protein (SXL-lethal pro 99.0 1.5E-09 5.2E-14 98.6 9.7 76 58-133 88-166 (168)
374 2xnq_A Nuclear polyadenylated 99.0 1.7E-09 5.8E-14 87.6 8.9 69 57-134 20-91 (97)
375 2cpd_A Apobec-1 stimulating pr 99.0 1.7E-09 5.7E-14 88.3 8.9 68 59-135 15-86 (99)
376 2ytc_A PRE-mRNA-splicing facto 99.0 8.8E-10 3E-14 87.1 6.9 68 59-133 12-82 (85)
377 1l3k_A Heterogeneous nuclear r 99.0 1.3E-09 4.5E-14 101.9 9.2 75 59-135 13-89 (196)
378 1xip_A Nucleoporin NUP159; bet 99.0 1E-08 3.4E-13 105.2 16.5 166 403-606 41-230 (388)
379 2diu_A KIAA0430 protein; struc 99.0 7.5E-10 2.5E-14 85.7 6.1 66 60-136 10-82 (96)
380 2qfj_A FBP-interacting repress 99.0 9.7E-10 3.3E-14 104.6 8.3 75 59-134 28-104 (216)
381 2dnp_A RNA-binding protein 14; 99.0 9.8E-10 3.3E-14 87.9 7.0 69 59-136 9-79 (90)
382 2yh0_A Splicing factor U2AF 65 99.0 1.3E-09 4.4E-14 102.1 8.8 78 57-135 112-191 (198)
383 2cqh_A IGF-II mRNA-binding pro 99.0 7.1E-10 2.4E-14 89.3 5.9 69 59-135 8-80 (93)
384 3d2w_A TAR DNA-binding protein 99.0 1.6E-09 5.4E-14 86.1 7.7 68 58-134 10-80 (89)
385 2dgu_A Heterogeneous nuclear r 99.0 1.1E-09 3.7E-14 90.1 7.1 69 59-136 11-81 (103)
386 1wf1_A RNA-binding protein RAL 99.0 1.2E-09 4E-14 91.2 7.3 68 58-134 26-96 (110)
387 2cjk_A Nuclear polyadenylated 98.9 8.5E-10 2.9E-14 100.2 7.0 74 59-134 87-162 (167)
388 3hrp_A Uncharacterized protein 98.9 1.7E-07 6E-12 98.2 25.7 232 313-579 135-408 (409)
389 4f02_A Polyadenylate-binding p 98.9 1.8E-09 6E-14 102.2 9.2 75 59-136 103-179 (213)
390 2e44_A Insulin-like growth fac 98.9 9.5E-10 3.2E-14 89.2 6.2 73 59-136 15-90 (96)
391 2e5i_A Heterogeneous nuclear r 98.9 2.3E-09 7.9E-14 90.0 8.6 68 61-134 27-98 (124)
392 3nmr_A Cugbp ELAV-like family 98.9 2E-09 6.8E-14 98.6 9.1 75 58-133 94-172 (175)
393 2dgt_A RNA-binding protein 30; 98.9 4.2E-09 1.4E-13 84.6 9.6 69 59-136 10-80 (92)
394 2kvi_A Nuclear polyadenylated 98.9 1.4E-09 4.9E-14 88.0 6.7 67 59-134 10-79 (96)
395 3md3_A Nuclear and cytoplasmic 98.9 1.7E-09 5.9E-14 98.0 7.9 73 61-135 2-76 (166)
396 3nmr_A Cugbp ELAV-like family 98.9 1.8E-09 6.1E-14 98.9 8.0 67 59-125 3-73 (175)
397 2e5g_A U6 snRNA-specific termi 98.9 1.5E-09 5E-14 87.6 6.2 69 59-133 8-77 (94)
398 1jmt_A Splicing factor U2AF 35 98.9 4.6E-10 1.6E-14 91.9 3.1 68 64-133 20-101 (104)
399 1l3k_A Heterogeneous nuclear r 98.9 3E-09 1E-13 99.4 8.8 76 59-136 104-181 (196)
400 2qe8_A Uncharacterized protein 98.9 5.9E-08 2E-12 99.4 19.1 261 204-522 17-310 (343)
401 2cjk_A Nuclear polyadenylated 98.9 1.7E-09 5.9E-14 98.1 6.5 67 59-127 3-71 (167)
402 2qe8_A Uncharacterized protein 98.9 5.4E-07 1.8E-11 92.2 26.1 276 235-565 9-310 (343)
403 3v4m_A Splicing factor U2AF 65 98.9 2.8E-09 9.5E-14 87.3 7.1 77 59-136 5-95 (105)
404 1fwx_A Nitrous oxide reductase 98.9 2.4E-07 8.1E-12 98.6 23.6 268 213-538 99-433 (595)
405 1x5p_A Negative elongation fac 98.9 6.8E-09 2.3E-13 84.2 9.2 69 59-135 15-84 (97)
406 3tyt_A Heterogeneous nuclear r 98.8 3.5E-09 1.2E-13 98.9 7.5 71 59-135 4-77 (205)
407 2ghs_A AGR_C_1268P; regucalcin 98.8 5.7E-07 1.9E-11 91.3 24.1 221 167-421 56-293 (326)
408 1fje_B Nucleolin RBD12, protei 98.8 5.3E-09 1.8E-13 95.7 7.9 72 58-134 98-170 (175)
409 2bz2_A Negative elongation fac 98.8 6.2E-09 2.1E-13 87.9 7.6 70 58-135 38-108 (121)
410 3ue2_A Poly(U)-binding-splicin 98.8 7E-09 2.4E-13 86.6 7.5 78 58-136 19-107 (118)
411 2iwa_A Glutamine cyclotransfer 98.8 6.2E-07 2.1E-11 86.5 22.0 210 234-537 8-238 (266)
412 3smz_A Protein raver-1, ribonu 98.8 1.6E-08 5.4E-13 100.6 9.8 76 59-135 95-172 (284)
413 3smz_A Protein raver-1, ribonu 98.8 1.5E-08 5.2E-13 100.7 9.4 77 58-136 183-262 (284)
414 2dit_A HIV TAT specific factor 98.8 2.7E-08 9.3E-13 83.0 9.0 79 58-141 14-105 (112)
415 1fje_B Nucleolin RBD12, protei 98.7 3.9E-09 1.3E-13 96.6 4.0 76 58-136 12-89 (175)
416 3tyt_A Heterogeneous nuclear r 98.7 9.6E-09 3.3E-13 96.0 6.6 67 59-127 123-193 (205)
417 1kb0_A Quinohemoprotein alcoho 98.7 1.1E-06 3.8E-11 98.3 24.2 73 527-604 457-534 (677)
418 3pgw_A U1-A; protein-RNA compl 98.7 2.7E-08 9.2E-13 98.8 9.7 74 58-135 8-87 (282)
419 3sde_A Paraspeckle component 1 98.7 1.9E-08 6.4E-13 98.4 8.0 79 59-138 96-179 (261)
420 1wf0_A TDP-43, TAR DNA-binding 98.7 5.9E-09 2E-13 82.9 3.5 66 59-134 5-74 (88)
421 2ghp_A U4/U6 snRNA-associated 98.7 1.9E-08 6.6E-13 100.4 7.4 76 58-135 209-288 (292)
422 3tht_A Alkylated DNA repair pr 98.7 2.4E-08 8.4E-13 99.4 7.9 68 52-125 11-82 (345)
423 1yiq_A Quinohemoprotein alcoho 98.7 8.1E-06 2.8E-10 91.5 28.7 169 214-396 120-346 (689)
424 3nol_A Glutamine cyclotransfer 98.7 2.3E-06 7.7E-11 81.5 20.3 126 235-394 31-161 (262)
425 3q7m_A Lipoprotein YFGL, BAMB; 98.6 1.4E-05 4.7E-10 82.8 27.7 290 215-578 53-375 (376)
426 2iwa_A Glutamine cyclotransfer 98.6 5.4E-06 1.8E-10 79.9 21.8 181 206-422 23-228 (266)
427 1npe_A Nidogen, entactin; glyc 98.6 4.7E-05 1.6E-09 74.4 29.4 252 322-602 2-263 (267)
428 2ghp_A U4/U6 snRNA-associated 98.6 5.2E-08 1.8E-12 97.3 7.9 76 58-135 116-194 (292)
429 2g4b_A Splicing factor U2AF 65 98.6 1.5E-08 5.2E-13 92.3 3.2 74 59-134 4-84 (172)
430 3u1l_A PRE-mRNA-splicing facto 98.6 3.8E-08 1.3E-12 92.6 6.0 61 58-124 133-204 (240)
431 2xe4_A Oligopeptidase B; hydro 98.6 4.6E-06 1.6E-10 94.7 24.3 165 201-388 170-354 (751)
432 2yh0_A Splicing factor U2AF 65 98.6 1.2E-08 4E-13 95.5 2.4 77 58-136 3-86 (198)
433 1kb0_A Quinohemoprotein alcoho 98.6 1.7E-05 5.9E-10 88.6 28.5 307 214-563 127-537 (677)
434 1npe_A Nidogen, entactin; glyc 98.6 7E-05 2.4E-09 73.2 29.3 249 215-515 1-263 (267)
435 2adc_A Polypyrimidine tract-bi 98.6 1E-07 3.5E-12 91.1 8.0 72 58-135 33-107 (229)
436 3mbr_X Glutamine cyclotransfer 98.5 1.4E-05 4.9E-10 75.3 22.0 129 235-395 9-140 (243)
437 3pgw_A U1-A; protein-RNA compl 98.5 1.4E-07 4.9E-12 93.5 8.6 72 58-134 206-279 (282)
438 1qm9_A Polypyrimidine tract-bi 98.5 8.6E-08 3E-12 89.5 6.3 71 59-135 3-76 (198)
439 3hxj_A Pyrrolo-quinoline quino 98.5 1.4E-05 4.6E-10 80.9 22.6 263 203-535 59-323 (330)
440 3sde_A Paraspeckle component 1 98.5 2.6E-07 8.9E-12 90.2 9.1 72 58-136 21-94 (261)
441 4a2l_A BT_4663, two-component 98.5 0.00048 1.7E-08 78.9 36.9 374 160-605 88-513 (795)
442 3nol_A Glutamine cyclotransfer 98.5 2.2E-05 7.5E-10 74.7 21.1 181 206-422 45-247 (262)
443 3nok_A Glutaminyl cyclase; bet 98.5 9.4E-06 3.2E-10 77.2 18.1 124 236-394 44-170 (268)
444 3s6e_A RNA-binding protein 39; 98.4 4.8E-07 1.7E-11 74.8 7.6 73 59-136 7-91 (114)
445 1yiq_A Quinohemoprotein alcoho 98.4 3.1E-05 1E-09 86.8 24.5 316 255-602 70-530 (689)
446 1qm9_A Polypyrimidine tract-bi 98.4 2.7E-07 9.1E-12 86.1 6.6 71 59-134 120-193 (198)
447 3hxj_A Pyrrolo-quinoline quino 98.4 3.3E-05 1.1E-09 78.0 22.2 296 206-580 22-323 (330)
448 4a2l_A BT_4663, two-component 98.4 0.0022 7.5E-08 73.4 39.8 344 203-606 214-602 (795)
449 2adc_A Polypyrimidine tract-bi 98.4 4.3E-07 1.5E-11 86.8 7.1 71 59-134 151-224 (229)
450 2d9o_A DNAJ (HSP40) homolog, s 98.3 6.2E-07 2.1E-11 72.1 6.2 59 68-134 27-86 (100)
451 2xe4_A Oligopeptidase B; hydro 98.3 7.5E-05 2.6E-09 84.7 25.1 197 353-565 176-386 (751)
452 2p4o_A Hypothetical protein; p 98.3 0.001 3.6E-08 66.2 30.3 223 313-565 36-277 (306)
453 3mbr_X Glutamine cyclotransfer 98.3 0.00016 5.5E-09 68.2 22.1 180 206-422 23-226 (243)
454 3nok_A Glutaminyl cyclase; bet 98.3 6.2E-05 2.1E-09 71.6 19.3 178 207-422 58-257 (268)
455 2hz6_A Endoplasmic reticulum t 98.2 1.5E-06 5.2E-11 89.7 6.1 202 254-559 8-217 (369)
456 2p4o_A Hypothetical protein; p 98.1 0.0011 3.7E-08 66.1 26.6 228 206-475 34-279 (306)
457 1owx_A Lupus LA protein, SS-B, 98.1 6.3E-06 2.2E-10 68.0 6.9 71 58-135 17-93 (121)
458 3q7m_A Lipoprotein YFGL, BAMB; 98.1 0.0014 4.9E-08 67.4 26.6 282 254-587 52-344 (376)
459 1kv9_A Type II quinohemoprotei 98.1 0.0011 3.8E-08 73.8 27.2 168 215-396 117-341 (668)
460 3v9f_A Two-component system se 98.1 0.012 4.2E-07 67.0 36.2 342 204-605 163-554 (781)
461 2hz6_A Endoplasmic reticulum t 98.0 3.3E-06 1.1E-10 87.2 5.3 178 174-393 11-197 (369)
462 3v9f_A Two-component system se 98.0 0.016 5.4E-07 66.1 36.3 342 204-605 211-598 (781)
463 3qqz_A Putative uncharacterize 98.0 0.0039 1.3E-07 59.6 25.5 200 351-578 27-250 (255)
464 3v65_B Low-density lipoprotein 98.0 0.0066 2.3E-07 62.6 28.8 242 246-540 79-322 (386)
465 3v65_B Low-density lipoprotein 98.0 0.015 5.1E-07 59.9 31.4 234 207-485 80-316 (386)
466 2ad6_A Methanol dehydrogenase 97.9 0.0048 1.6E-07 67.2 28.3 78 479-565 445-526 (571)
467 1k3i_A Galactose oxidase precu 97.9 0.0012 4.1E-08 73.6 24.1 296 247-565 189-530 (656)
468 3v64_C Agrin; beta propeller, 97.9 0.017 5.9E-07 58.5 30.3 240 246-538 36-277 (349)
469 3qqz_A Putative uncharacterize 97.9 0.0057 1.9E-07 58.4 24.7 189 245-475 28-244 (255)
470 3s94_A LRP-6, low-density lipo 97.9 0.05 1.7E-06 59.7 39.6 159 403-583 352-512 (619)
471 3dxb_A Thioredoxin N-terminall 97.9 2.2E-05 7.4E-10 74.4 7.9 64 72-136 143-211 (222)
472 3tc9_A Hypothetical hydrolase; 97.9 0.012 4.1E-07 61.5 29.4 109 245-386 138-255 (430)
473 1w6s_A Methanol dehydrogenase 97.8 0.0058 2E-07 66.6 27.1 51 512-565 482-536 (599)
474 3v64_C Agrin; beta propeller, 97.8 0.036 1.2E-06 56.1 32.5 186 205-420 35-223 (349)
475 2fp8_A Strictosidine synthase; 97.8 0.015 5E-07 58.3 28.2 251 245-535 20-312 (322)
476 1k3i_A Galactose oxidase precu 97.8 0.0028 9.6E-08 70.7 24.5 278 208-522 190-530 (656)
477 1kv9_A Type II quinohemoprotei 97.8 0.0053 1.8E-07 68.3 26.4 301 255-585 66-493 (668)
478 1ijq_A LDL receptor, low-densi 97.7 0.044 1.5E-06 54.6 30.0 223 276-539 11-241 (316)
479 4hw6_A Hypothetical protein, I 97.7 0.018 6.1E-07 60.2 27.6 143 245-420 140-293 (433)
480 2dnr_A Synaptojanin-1; RRM dom 97.7 7E-05 2.4E-09 57.5 6.3 67 59-135 7-83 (91)
481 2fp8_A Strictosidine synthase; 97.7 0.013 4.4E-07 58.6 24.7 244 313-580 23-312 (322)
482 3s25_A Hypothetical 7-bladed b 97.6 0.011 3.6E-07 58.4 22.8 229 316-587 21-261 (302)
483 4a0p_A LRP6, LRP-6, low-densit 97.6 0.13 4.3E-06 56.5 43.8 161 404-585 344-512 (628)
484 1ijq_A LDL receptor, low-densi 97.6 0.067 2.3E-06 53.2 29.5 227 217-488 3-239 (316)
485 3s25_A Hypothetical 7-bladed b 97.6 0.027 9.2E-07 55.6 24.7 244 251-565 21-281 (302)
486 4hw6_A Hypothetical protein, I 97.5 0.068 2.3E-06 55.8 28.8 239 313-579 143-431 (433)
487 1ufw_A Synaptojanin 2; RNP dom 97.5 0.00012 4.3E-09 56.3 5.6 67 59-135 15-92 (95)
488 1flg_A Protein (quinoprotein e 97.5 0.048 1.6E-06 59.4 28.2 78 479-565 467-549 (582)
489 3p5b_L Low density lipoprotein 97.5 0.079 2.7E-06 54.7 28.5 224 276-540 93-324 (400)
490 3tc9_A Hypothetical hydrolase; 97.5 0.024 8.2E-07 59.3 24.3 141 205-367 138-286 (430)
491 3s94_A LRP-6, low-density lipo 97.3 0.3 1E-05 53.4 42.8 397 166-604 46-493 (619)
492 2ad6_A Methanol dehydrogenase 97.3 0.039 1.3E-06 60.0 24.2 74 526-604 443-521 (571)
493 2xzh_A Clathrin heavy chain 1; 97.3 0.15 5.1E-06 49.7 24.7 274 272-584 46-335 (365)
494 2ism_A Putative oxidoreductase 97.2 0.083 2.8E-06 53.5 24.6 75 206-285 33-115 (352)
495 3m0c_C LDL receptor, low-densi 97.2 0.46 1.6E-05 53.4 32.6 230 217-488 397-633 (791)
496 1w6s_A Methanol dehydrogenase 97.2 0.19 6.4E-06 54.7 27.9 134 208-348 110-296 (599)
497 3a9g_A Putative uncharacterize 97.2 0.16 5.6E-06 51.2 25.9 48 206-254 31-83 (354)
498 3p5b_L Low density lipoprotein 97.2 0.29 9.8E-06 50.4 32.1 230 216-488 84-321 (400)
499 3sov_A LRP-6, low-density lipo 97.2 0.2 7E-06 49.7 25.9 234 257-542 6-244 (318)
500 3amr_A 3-phytase; beta-propell 97.2 0.075 2.6E-06 52.7 22.0 184 379-580 50-262 (355)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-41 Score=381.42 Aligned_cols=402 Identities=13% Similarity=0.173 Sum_probs=304.8
Q ss_pred ccccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc--
Q 005315 160 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-- 236 (702)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-- 236 (702)
.......++|+|+. ++... ++.+.+|+. ..+.....+.+|...|++++|||+|++||+++.++ |+|||.. +..
T Consensus 19 g~~~~~~~spdg~~-l~~~~-~~~v~l~~~-~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~-~~~~~ 94 (611)
T 1nr0_A 19 GTAVVLGNTPAGDK-IQYCN-GTSVYTVPV-GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT-QTTHI 94 (611)
T ss_dssp TCCCCCEECTTSSE-EEEEE-TTEEEEEET-TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESS-STTCC
T ss_pred CceeEEeeCCCCCE-EEeCC-CCEEEEecC-CCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECC-CCcce
Confidence 34445556788873 33333 557789998 45677788899999999999999999999999999 8899986 332
Q ss_pred eeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceE
Q 005315 237 RLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 237 ~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 314 (702)
....+ +...|.+++|||+|++|++++.+.. ..+.|++|| ++..+..+.+|...+. ++
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~------~~~~v~~wd--~~~~~~~l~gh~~~v~-------------~v 153 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRE------RFGHVFLFD--TGTSNGNLTGQARAMN-------------SV 153 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSS------CSEEEEETT--TCCBCBCCCCCSSCEE-------------EE
T ss_pred eeEeecccCCceEEEEECCCCCEEEEEECCCC------ceeEEEEee--CCCCcceecCCCCCce-------------EE
Confidence 22333 3345999999999999999886511 115788887 6777888888887764 79
Q ss_pred EEcCCCCc-EEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCccee
Q 005315 315 RWGGGKDK-YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 392 (702)
Q Consensus 315 ~~s~~dg~-~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (702)
+|+| ++. .|++++ |++|++|+..+++.+.....|...|.+++|+|+|++|++ ++.|+.+++| +..+.+.+
T Consensus 154 ~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las-----~s~D~~i~lw--d~~~g~~~ 225 (611)
T 1nr0_A 154 DFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS-----TGGDGTIVLY--NGVDGTKT 225 (611)
T ss_dssp EECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE-----EETTSCEEEE--ETTTCCEE
T ss_pred EECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEE-----EECCCcEEEE--ECCCCcEe
Confidence 9999 987 588888 999999999988777666678888999999999999999 7788876665 44444433
Q ss_pred eeee-------ecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCc-----------------------
Q 005315 393 RQKN-------LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI----------------------- 442 (702)
Q Consensus 393 ~~~~-------~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~----------------------- 442 (702)
.... .+......+.|+|+|++|++++.+++ +++|++.....
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~---------v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT---------IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE---------EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe---------EEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence 3221 24455667899999999999999887 45554432110
Q ss_pred -----------------ceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCc--------CceEE-
Q 005315 443 -----------------PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA--------GRVSK- 496 (702)
Q Consensus 443 -----------------~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~--------~~~~~- 496 (702)
......+.+|...|.+++|+|+|++|++++.|+ .|++||+.++... ..+..
T Consensus 297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~---~v~~Wd~~~~~~~~~~~~~h~~~v~~~ 373 (611)
T 1nr0_A 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG---HINSWDISTGISNRVFPDVHATMITGI 373 (611)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCEEECSSCSCSSCEEEE
T ss_pred EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCceeeecccCCcceEEEE
Confidence 001234568999999999999999999999999 9999998643210 00000
Q ss_pred --------------------------------------------------------------------EEEc-CCCceeE
Q 005315 497 --------------------------------------------------------------------LTTL-KGKQANA 507 (702)
Q Consensus 497 --------------------------------------------------------------------~~~~-~~~~v~~ 507 (702)
+..+ ....+.+
T Consensus 374 ~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~ 453 (611)
T 1nr0_A 374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSC 453 (611)
T ss_dssp EECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEE
T ss_pred EECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceE
Confidence 0000 0124678
Q ss_pred EEEccCCCEEEEEeccCCCceEEEEECCCcce--ee-ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc--c
Q 005315 508 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELET--MA-TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG--K 582 (702)
Q Consensus 508 ~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~--~~-~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g--~ 582 (702)
++|||+|++|++++. |+.|++||+.+... +. ..|...|++++|||||++|++++. |+.+++|++.. .
T Consensus 454 va~spdg~~lasgs~---D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~-----d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 454 VALSNDKQFVAVGGQ---DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-----SRKVIPYSVANNFE 525 (611)
T ss_dssp EEECTTSCEEEEEET---TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-----TSCEEEEEGGGTTE
T ss_pred EEEeCCCCEEEEeCC---CCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC-----CCCEEEEEcCCCCc
Confidence 999999999999998 99999999986543 12 356788999999999999999999 99999999874 3
Q ss_pred eeee----eccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 583 LLYR----TLKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 583 ~l~~----~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.+.. .|...|++++|+|++++|++++.|+.|+
T Consensus 526 ~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~ 561 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 561 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeeeeeeeecccceeEEEECCCCCEEEEEECCCcEE
Confidence 3322 2778999999999999999999998876
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-40 Score=370.98 Aligned_cols=404 Identities=15% Similarity=0.194 Sum_probs=299.6
Q ss_pred cccccccCCCCCceEEEEeCCceEEEecCCC-CCCCcccccCCCcccceEEECCCCcEEEEEeCC----c-eEEeecCcC
Q 005315 161 NLQKWLTDEKARDQFVIRSGTDTEVLWNDAR-HLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----G-AAVWGGANT 234 (702)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~-i~iw~~~~~ 234 (702)
.+....++|+|+ .++..+.++++.+|+... .......+.+|...|.+++|||+|++||+++.+ + |.+|+.. .
T Consensus 61 ~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~-~ 138 (611)
T 1nr0_A 61 QTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-T 138 (611)
T ss_dssp CEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-C
T ss_pred ceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC-C
Confidence 355667788775 456666788899999732 222334678899999999999999999998865 2 6688754 3
Q ss_pred cceeeeecCCCeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccce
Q 005315 235 FNRLMRYAHPQVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPV 313 (702)
Q Consensus 235 ~~~~~~~~~~~v~~i~fSpdg~-~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 313 (702)
.......|...|.+++|+|++. .|++++.| ++|++||..+++++..+.+|...+. +
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D----------~~v~lwd~~~~~~~~~l~~H~~~V~-------------~ 195 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDD----------NTVAIFEGPPFKFKSTFGEHTKFVH-------------S 195 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETT----------SCEEEEETTTBEEEEEECCCSSCEE-------------E
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCC----------CeEEEEECCCCeEeeeeccccCceE-------------E
Confidence 2222222344599999999997 59999999 9999999999999999999988764 7
Q ss_pred EEEcCCCCcEEEEec-CCeEEEEecCCccccccee-------eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEe
Q 005315 314 FRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS-------LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 385 (702)
Q Consensus 314 ~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 385 (702)
++|+| +|++||+++ |++|++|++.+++.+.... .|...|.+++|+|++++|++ ++.|+.+++|.
T Consensus 196 v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s-----~s~D~~v~lWd-- 267 (611)
T 1nr0_A 196 VRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS-----ASADKTIKIWN-- 267 (611)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE-----EETTSEEEEEE--
T ss_pred EEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEE-----EeCCCeEEEEe--
Confidence 99999 999999999 9999999998877654432 47778999999999999998 77787766654
Q ss_pred cCCcceeee-------------------------------------------eeecccccceeEEccCCCEEEEEEcccc
Q 005315 386 IPSKEELRQ-------------------------------------------KNLFSVSDCKMYWQSSGDYLAVKVDRYT 422 (702)
Q Consensus 386 ~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 422 (702)
+.+.+.+.. ...+......++|+|+|++|++++.++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~ 347 (611)
T 1nr0_A 268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH 347 (611)
T ss_dssp TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence 433322111 1112334556789999999999998876
Q ss_pred ccccccc---------------------------------ccEEEEEEecCCc-------------ce------------
Q 005315 423 KTKKSTY---------------------------------TGFELFRIKERDI-------------PI------------ 444 (702)
Q Consensus 423 ~~~~~~~---------------------------------~~~~l~~l~~~~~-------------~~------------ 444 (702)
...|... ..+++|++..... +.
T Consensus 348 v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~ 427 (611)
T 1nr0_A 348 INSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 427 (611)
T ss_dssp EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE
T ss_pred EEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEE
Confidence 3322111 1122222211000 00
Q ss_pred -------------eEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE-cCCCceeEEEE
Q 005315 445 -------------EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LKGKQANALFW 510 (702)
Q Consensus 445 -------------~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~ 510 (702)
....+ .|...+.+++|+|+|++||+++.|+ .|++|++.++. ...+.. .+...|++++|
T Consensus 428 ~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~---~v~lwd~~~~~----~~~~~~~~h~~~v~~v~f 499 (611)
T 1nr0_A 428 AACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDS---KVHVYKLSGAS----VSEVKTIVHPAEITSVAF 499 (611)
T ss_dssp EEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTS---EEEEEEEETTE----EEEEEEEECSSCEEEEEE
T ss_pred EEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCC---eEEEEEccCCc----eeeeeccCCCCceEEEEE
Confidence 00011 2456788999999999999999999 99999997542 112222 23457999999
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCC-cceeee----cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc-c-e
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDE-LETMAT----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-K-L 583 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~-~~~~~~----~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~-~ 583 (702)
||+|++|++++. |+.|++|++.+ ++++.. .|...|++++|+|||++||+++. |+.|+||++.. . .
T Consensus 500 spdg~~las~s~---d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~-----D~~v~lW~~~~~~~~ 571 (611)
T 1nr0_A 500 SNNGAFLVATDQ---SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-----DNSVIVWNMNKPSDH 571 (611)
T ss_dssp CTTSSEEEEEET---TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTCTTSC
T ss_pred CCCCCEEEEEcC---CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC-----CCcEEEEECCCcccc
Confidence 999999999998 99999999987 555432 37789999999999999999999 99999999974 2 2
Q ss_pred e-e--eec-cccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 584 L-Y--RTL-KDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 584 l-~--~~~-~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
+ . ..| ...+.+++|+|++. |++++.|+.|+
T Consensus 572 ~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~ 605 (611)
T 1nr0_A 572 PIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIK 605 (611)
T ss_dssp CEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEE
T ss_pred cchhhccCcccCeeEEEEcCCCE-EEEecCCCCEE
Confidence 2 2 235 67899999999999 99999887765
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.7e-39 Score=358.73 Aligned_cols=381 Identities=15% Similarity=0.261 Sum_probs=306.8
Q ss_pred cccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee
Q 005315 163 QKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY 241 (702)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~ 241 (702)
......|+++ .++..+.++...+|+. .++....+.+|...|.+++|+|+|++|++++.++ +++|+.. .+.+..+
T Consensus 184 ~~~~~~~~~~-~l~~~~~d~~v~~w~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~~ 258 (577)
T 2ymu_A 184 WGVAFSPDGQ-TIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTL 258 (577)
T ss_dssp EEEEECTTSS-CEEEEETTSEEEEECT--TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT--SCEEEEE
T ss_pred eeeeecCCCC-EEEEEcCCCEEEEEeC--CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEE
Confidence 3444556554 4566677888889986 4666777889999999999999999999999999 8899976 3334333
Q ss_pred --cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCC
Q 005315 242 --AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 319 (702)
Q Consensus 242 --~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~ 319 (702)
+...|.+++|+|++++|++++.+ +.|++|+. +++.++.+.+|...+. +++|+|
T Consensus 259 ~~~~~~v~~v~~~~d~~~l~~~~~d----------~~i~~w~~-~~~~~~~~~~h~~~v~-------------~~~~~~- 313 (577)
T 2ymu_A 259 TGHSSSVNGVAFRPDGQTIASASDD----------KTVKLWNR-NGQLLQTLTGHSSSVW-------------GVAFSP- 313 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETT----------SCEEEEET-TSCEEEEECCCSSCEE-------------EEEECT-
T ss_pred ecCCCCEEEEEEcCCCCEEEEEeCC----------CEEEEEeC-CCcEEEEEecCCCCeE-------------EEEECC-
Confidence 33459999999999999999999 99999995 7888889988877763 789999
Q ss_pred CCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec
Q 005315 320 KDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 398 (702)
Q Consensus 320 dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 398 (702)
++++|++++ |+.|++|+.....+ .....+...+.+++|+|++++|++ ++.++.+++| +. +.+.+.....+
T Consensus 314 ~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~-----~~~dg~v~~~--~~-~~~~~~~~~~~ 384 (577)
T 2ymu_A 314 DGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSPDGQTIAS-----ASDDKTVKLW--NR-NGQLLQTLTGH 384 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEE-EEECCCSSCEEEEEECTTSSEEEE-----EETTSEEEEE--ET-TCCEEEEEECC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCee-EEEeCCCCCEEEEEECCCCCEEEE-----EeCCCEEEEE--cC-CCCEEEEecCC
Confidence 999999998 99999999875543 334456678999999999999998 6666665555 43 33444444445
Q ss_pred ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCC
Q 005315 399 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 478 (702)
Q Consensus 399 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 478 (702)
......+.|+|+|++|++++.++. +.+|+... . ....+.+|...|.+++|+|++++|++++.|+
T Consensus 385 ~~~v~~~~~s~dg~~l~~~~~d~~---------v~~~~~~~--~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~--- 448 (577)
T 2ymu_A 385 SSSVRGVAFSPDGQTIASASDDKT---------VKLWNRNG--Q--LLQTLTGHSSSVWGVAFSPDDQTIASASDDK--- 448 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSE---------EEEECTTC--C--EEEEEECCSSCEEEEEECTTSSEEEEEETTS---
T ss_pred CCCeEEEEECCCCCEEEEEeCCCE---------EEEEeCCC--C--EEEEecCCCCCeEEEEECCCCCEEEEEcCCC---
Confidence 555667899999999999998876 78887432 2 2244668999999999999999999999999
Q ss_pred eEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee--ecccCceeeeEEC
Q 005315 479 DISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--TAEHFMATDVEWD 554 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~--~~~~~~i~~~~~s 554 (702)
.|++|++.. . .+..+. ...+.+++|+|+|++|++++. |+.|++||.. ++.+. ..|...|++++|+
T Consensus 449 ~v~~w~~~~-~------~~~~~~~~~~~v~~~~~spd~~~las~~~---d~~i~iw~~~-~~~~~~~~~h~~~v~~l~~s 517 (577)
T 2ymu_A 449 TVKLWNRNG-Q------LLQTLTGHSSSVRGVAFSPDGQTIASASD---DKTVKLWNRN-GQLLQTLTGHSSSVRGVAFS 517 (577)
T ss_dssp EEEEEETTS-C------EEEEEECCSSCEEEEEECTTSCEEEEEET---TSEEEEEETT-SCEEEEEECCSSCEEEEEEC
T ss_pred EEEEEECCC-C------EEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEcCC-CCEEEEEeCCCCCEEEEEEc
Confidence 999999632 1 444444 347999999999999999998 9999999975 45544 3677899999999
Q ss_pred CCCCEEEEEEeecccccccEEEEEeccceeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 555 PTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 555 pdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
|+|++|++++. |+.|+|||..|+.+... |.+.|++++|+|++++|+|++.|+.|+
T Consensus 518 ~dg~~l~s~~~-----dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 518 PDGQTIASASD-----DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK 574 (577)
T ss_dssp TTSSCEEEEET-----TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred CCCCEEEEEEC-----cCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 99999999999 99999999988877654 678999999999999999999887653
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.9e-37 Score=343.21 Aligned_cols=395 Identities=15% Similarity=0.256 Sum_probs=303.3
Q ss_pred cccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceee
Q 005315 161 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 239 (702)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 239 (702)
.+.+..++|+|+ .++..+.++.+.+|+. .++....+.+|...|++++|||||++||+++.++ |+|||.. ++.+.
T Consensus 18 ~V~~~a~spdg~-~las~~~d~~v~iWd~--~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~--~~~~~ 92 (577)
T 2ymu_A 18 SVRGVAFSPDGQ-TIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQ 92 (577)
T ss_dssp CEEEEEECTTSS-CEEEEETTSEEEEECT--TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEE
T ss_pred cEEEEEECCCCC-EEEEEeCCCEEEEEEC--CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEE
Confidence 355667788887 3455667788889995 5777888999999999999999999999999998 8899976 34455
Q ss_pred ee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCccccc------------CC---
Q 005315 240 RY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV------------GG--- 302 (702)
Q Consensus 240 ~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~------------~~--- 302 (702)
.+ .|. .|.+++|+|+|++|++++.+ +.+++|+... .....+..+...+.. ..
T Consensus 93 ~~~~~~~~v~~~~~s~d~~~l~~~~~d----------~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 93 TLTGHSSSVRGVAFSPDGQTIASASDD----------KTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETT----------SCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EEECCCCCEEEEEECCCCCEEEEEcCC----------Cceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccccc
Confidence 55 333 59999999999999999999 8999999643 323322222211100 00
Q ss_pred --------------CCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEE
Q 005315 303 --------------TGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISL 367 (702)
Q Consensus 303 --------------~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~ 367 (702)
.....+. ...+.|+| ++++|++++ ++.|++|+.. ++.+.....|...|.+++|+|++++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 238 (577)
T 2ymu_A 162 TVKLWNRNGQLLQTLTGHSSS-VWGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIAS 238 (577)
T ss_dssp EEEEECTTSCEEEEEECCSSC-EEEEEECT-TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred ceeccccceeeeeeccCCCcc-eeeeeecC-CCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCCEEEE
Confidence 0000000 11678999 999999998 9999999964 5555556667788999999999999998
Q ss_pred EeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEE
Q 005315 368 FVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVL 447 (702)
Q Consensus 368 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 447 (702)
++.++.+++|. . ..+.+.....+......+.|+|+|+.|++++.++. +.+|+.... ...
T Consensus 239 -----~~~d~~i~~w~--~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~---------i~~w~~~~~----~~~ 297 (577)
T 2ymu_A 239 -----ASDDKTVKLWN--R-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT---------VKLWNRNGQ----LLQ 297 (577)
T ss_dssp -----EETTSCEEEEC--T-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEEEETTSC----EEE
T ss_pred -----EeCCCEEEEEe--C-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCE---------EEEEeCCCc----EEE
Confidence 66777766654 3 23334433434555567789999999999998877 788875321 224
Q ss_pred EecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCC
Q 005315 448 ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGF 525 (702)
Q Consensus 448 ~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~ 525 (702)
.+.+|...|.+++|+|++++|++++.|+ .|++|++... .+..+. ...+.+++|+|+|++|++++.
T Consensus 298 ~~~~h~~~v~~~~~~~~~~~l~t~~~d~---~i~~w~~~~~-------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--- 364 (577)
T 2ymu_A 298 TLTGHSSSVWGVAFSPDGQTIASASDDK---TVKLWNRNGQ-------HLQTLTGHSSSVWGVAFSPDGQTIASASD--- 364 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSC-------EEEEECCCSSCEEEEEECTTSSEEEEEET---
T ss_pred EEecCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeCCCC-------eeEEEeCCCCCEEEEEECCCCCEEEEEeC---
Confidence 5678999999999999999999999999 9999997432 334444 347899999999999999998
Q ss_pred CceEEEEECCCcceee--ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee--ccccEeeEEEeeCC
Q 005315 526 NGQLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT--LKDHFFQFLWRPRP 601 (702)
Q Consensus 526 dg~v~i~d~~~~~~~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~--~~~~i~~~~w~p~~ 601 (702)
+|.|++|+.. ++.+. ..|...|++++|+|+|++|++++. |+.+++|+..++.+... |...+++++|+|++
T Consensus 365 dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 365 DKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-----DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDD 438 (577)
T ss_dssp TSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSEEEEECTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred CCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeC-----CCEEEEEeCCCCEEEEecCCCCCeEEEEECCCC
Confidence 9999999975 44443 356788999999999999999999 99999999888776544 66889999999999
Q ss_pred CCCCChhhHHHHH
Q 005315 602 PSFLTPEKEEEIA 614 (702)
Q Consensus 602 ~~l~s~~~d~~i~ 614 (702)
+.|++++.++.|+
T Consensus 439 ~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 439 QTIASASDDKTVK 451 (577)
T ss_dssp SEEEEEETTSEEE
T ss_pred CEEEEEcCCCEEE
Confidence 9999999887664
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-35 Score=316.28 Aligned_cols=281 Identities=18% Similarity=0.279 Sum_probs=234.9
Q ss_pred cccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-C-CCeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005315 196 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-H-PQVKLIDFSPGEKYLVTYSSHEPSNPRDA 272 (702)
Q Consensus 196 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~-~~v~~i~fSpdg~~l~t~s~d~~~~~~~~ 272 (702)
...+.+|...|++++|+|+|.+||+++.|+ |+|||.. ++.....+. | ..|.+++|+|+|++|++|+.|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~-~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D-------- 171 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSGKLLASCSAD-------- 171 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTTSSEEEEEETT--------
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCC--------
Confidence 456789999999999999999999999999 8899998 776666653 4 459999999999999999999
Q ss_pred CccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccC
Q 005315 273 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE 351 (702)
Q Consensus 273 ~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~ 351 (702)
++|+|||+.++++++.+.+|...+. +++|+| ++++|++++ |+.|++||+.++..+.....|..
T Consensus 172 --~~i~iwd~~~~~~~~~~~~h~~~V~-------------~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~ 235 (410)
T 1vyh_C 172 --MTIKLWDFQGFECIRTMHGHDHNVS-------------SVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 235 (410)
T ss_dssp --SCCCEEETTSSCEEECCCCCSSCEE-------------EEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred --CeEEEEeCCCCceeEEEcCCCCCEE-------------EEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc
Confidence 9999999999999999999987764 799999 999999999 99999999999888777777778
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 431 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 431 (702)
.|..+.|+|++.+|++ ++.|+.+++|. +.+.....
T Consensus 236 ~v~~~~~~~~g~~l~s-----~s~D~~v~vwd--~~~~~~~~-------------------------------------- 270 (410)
T 1vyh_C 236 WVRMVRPNQDGTLIAS-----CSNDQTVRVWV--VATKECKA-------------------------------------- 270 (410)
T ss_dssp CEEEEEECTTSSEEEE-----EETTSCEEEEE--TTTCCEEE--------------------------------------
T ss_pred cEEEEEECCCCCEEEE-----EcCCCeEEEEE--CCCCceee--------------------------------------
Confidence 8999999999999988 66777766553 32222111
Q ss_pred EEEEEEecCCcceeEEEecCCCCceeEEEEeeC--------------------CcEEEEEEcCCCCCeEEEEEeecccCc
Q 005315 432 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--------------------GHRFAVIHGDSPRPDISFYSMRTAQHA 491 (702)
Q Consensus 432 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--------------------g~~l~~~~~d~~~~~v~i~d~~~~~~~ 491 (702)
.+.+|...|.+++|+|+ |.+|++++.|+ .|++||++++.
T Consensus 271 ----------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~---~i~iwd~~~~~-- 329 (410)
T 1vyh_C 271 ----------------ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK---TIKMWDVSTGM-- 329 (410)
T ss_dssp ----------------EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS---EEEEEETTTTE--
T ss_pred ----------------EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC---eEEEEECCCCc--
Confidence 22345556666666664 77899999999 99999997654
Q ss_pred CceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeec
Q 005315 492 GRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSV 567 (702)
Q Consensus 492 ~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~ 567 (702)
.+..+.+| .|++++|+|+|++|++++. ||.|++||+.+++.+.. .|...|++++|+|++.+|++++.
T Consensus 330 ----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~-- 400 (410)
T 1vyh_C 330 ----CLMTLVGHDNWVRGVLFHSGGKFILSCAD---DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-- 400 (410)
T ss_dssp ----EEEEEECCSSCEEEEEECSSSSCEEEEET---TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET--
T ss_pred ----eEEEEECCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 55555544 6899999999999999998 99999999998776654 57788999999999999999999
Q ss_pred ccccccEEEEEe
Q 005315 568 HEMENGFNIWSF 579 (702)
Q Consensus 568 ~~~d~~v~iw~~ 579 (702)
|+.|+||++
T Consensus 401 ---D~~i~vW~~ 409 (410)
T 1vyh_C 401 ---DQTVKVWEC 409 (410)
T ss_dssp ---TSEEEEEC-
T ss_pred ---CCcEEEEeC
Confidence 999999985
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.3e-35 Score=299.22 Aligned_cols=279 Identities=14% Similarity=0.221 Sum_probs=228.1
Q ss_pred cccCCCcccceEEECCC----CcEEEEEeCCc-eEEeecCcCcceee--ee-cCC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005315 198 VYKRSYWTESFVQWSPL----GTYLATVHRQG-AAVWGGANTFNRLM--RY-AHP-QVKLIDFSPGEKYLVTYSSHEPSN 268 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Spd----g~~lat~~~~~-i~iw~~~~~~~~~~--~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~ 268 (702)
.+++|...|++++|+|+ +.+||+|+.|+ |+||+.. ...... .+ .|. .|.+++|+|++.++++++.|
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~-~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D---- 101 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR-DERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD---- 101 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEE-TTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC-CCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC----
Confidence 45789999999999985 67999999999 8899987 443322 23 344 59999999999999999999
Q ss_pred CcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccccee
Q 005315 269 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 347 (702)
Q Consensus 269 ~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~ 347 (702)
++|++||+.+++.+..+..+...+ + +++|+| ++++|++++ ++.|++|++.+++......
T Consensus 102 ------~~i~lWd~~~~~~~~~~~~~~~~~------------~-~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 102 ------AHIRLWDLENGKQIKSIDAGPVDA------------W-TLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp ------SEEEEEETTTTEEEEEEECCTTCC------------C-CEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred ------CcEEEEECCCCCEEEEEeCCCccE------------E-EEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence 999999999999999988776554 2 689999 999999999 9999999999887665555
Q ss_pred eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccc
Q 005315 348 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 348 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
.+...|.+++|+|++++|++ ++.++.+++| ++.+.+
T Consensus 162 ~~~~~v~~~~~spdg~~las-----g~~dg~i~iw--d~~~~~------------------------------------- 197 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLAS-----GAIDGIINIF--DIATGK------------------------------------- 197 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEE-----EETTSCEEEE--ETTTTE-------------------------------------
T ss_pred CCCceEEEEEECCCCCEEEE-----EcCCCeEEEE--ECCCCc-------------------------------------
Confidence 55566888888888888887 5566654443 322111
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ce
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QA 505 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v 505 (702)
....+.+|..+|.+++|+|++++|++++.|+ .|++||++++. .+..+.+| .|
T Consensus 198 -----------------~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg---~i~iwd~~~~~------~~~~~~~h~~~v 251 (321)
T 3ow8_A 198 -----------------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDG---YIKIYDVQHAN------LAGTLSGHASWV 251 (321)
T ss_dssp -----------------EEEEECCCSSCCCEEEECTTSCEEEEECTTS---CEEEEETTTCC------EEEEECCCSSCE
T ss_pred -----------------EEEEEcccCCceeEEEEcCCCCEEEEEcCCC---eEEEEECCCcc------eeEEEcCCCCce
Confidence 0123447788999999999999999999999 99999997554 55566555 68
Q ss_pred eEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 506 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
.+++|+|+|++|++++. |+.|++||+.+++.+.+ .|...|.+++|+|+|++|++++. |+.|+|||.
T Consensus 252 ~~~~~sp~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~-----d~~i~vwd~ 319 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSS---DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD-----DQEIHIYDC 319 (321)
T ss_dssp EEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TCCEEEEEC
T ss_pred EEEEECCCCCEEEEEeC---CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC-----CCeEEEEeC
Confidence 99999999999999998 99999999998888765 56689999999999999999999 999999995
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-35 Score=358.59 Aligned_cols=399 Identities=13% Similarity=0.150 Sum_probs=304.5
Q ss_pred ccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeee
Q 005315 162 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR 240 (702)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~ 240 (702)
+....++|+++ .++..+.++.+.+|+. .+++....+.+|...|++++|||+|++||+++.++ |+|||.. +++.+..
T Consensus 618 v~~~~~s~~~~-~l~s~~~d~~i~vw~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~ 694 (1249)
T 3sfz_A 618 VYHACFSQDGQ-RIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA-TGKLVHT 694 (1249)
T ss_dssp EEEEEECTTSS-EEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEE
T ss_pred EEEEEECCCCC-EEEEEeCCCeEEEEEC-CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC-CCceEEE
Confidence 44556677665 4456667888889999 57778888899999999999999999999999998 8899999 7887777
Q ss_pred ec-CC-CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEE
Q 005315 241 YA-HP-QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 316 (702)
Q Consensus 241 ~~-~~-~v~~i~fSp--dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 316 (702)
+. |. .|.+++|+| ++.++++++.+ +.|++||+.+++++..+.+|...+. +++|
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d----------~~v~vwd~~~~~~~~~~~~h~~~v~-------------~~~~ 751 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSND----------FFLKLWDLNQKECRNTMFGHTNSVN-------------HCRF 751 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETT----------SCEEEEETTSSSEEEEECCCSSCEE-------------EEEE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCC----------CeEEEEECCCcchhheecCCCCCEE-------------EEEE
Confidence 73 43 599999999 55689999999 9999999999999999999887764 7899
Q ss_pred cCCCCcEEEEec-CCeEEEEecCCccccccee------------------------------------------------
Q 005315 317 GGGKDKYFAKLG-KNMISVYETESFTLIDKKS------------------------------------------------ 347 (702)
Q Consensus 317 s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~------------------------------------------------ 347 (702)
+| ++++|++++ |+.|++|++.++.......
T Consensus 752 sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 752 SP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830 (1249)
T ss_dssp CS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred ec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence 99 999999998 9999999987654321110
Q ss_pred -------eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcc
Q 005315 348 -------LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 348 -------~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 420 (702)
.|...|.+++|+|+++++++ ++.++. |.+|+..+...+.....+......+.|+|+|.+|++++.+
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~-----~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSPYDHLAVI-----ALSQYC--VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECSSTTEEEE-----ECSSSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ceeEEcCCCCCceEEEEEcCCCCEEEE-----EeCCCe--EEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence 23345778888888888887 555555 5556666666555555555666778899999999998887
Q ss_pred ccccccccc----------------------------------------------------------------------c
Q 005315 421 YTKTKKSTY----------------------------------------------------------------------T 430 (702)
Q Consensus 421 ~~~~~~~~~----------------------------------------------------------------------~ 430 (702)
+....|... +
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence 653222110 1
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCc------CceE---------
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA------GRVS--------- 495 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~------~~~~--------- 495 (702)
.+.+|++.... ....+.+|...|.+++|+|+|++|++++.|+ .|++|++.++... ..+.
T Consensus 984 ~i~i~d~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 1057 (1249)
T 3sfz_A 984 AIKIIELPNNR---VFSSGVGHKKAVRHIQFTADGKTLISSSEDS---VIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR 1057 (1249)
T ss_dssp CCEEEETTTTS---CEEECCCCSSCCCCEEECSSSSCEEEECSSS---BEEEEETTTTEEECCBCCSSCEEEEEECSSSE
T ss_pred CEEEEEcCCCc---eeeecccCCCceEEEEECCCCCEEEEEcCCC---EEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence 12333332211 1234557899999999999999999999998 8999997653210 0000
Q ss_pred -------------------EEEEc--CCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeE
Q 005315 496 -------------------KLTTL--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVE 552 (702)
Q Consensus 496 -------------------~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~ 552 (702)
.+..+ +...+.+++|+|+|+++++++. ||.|++||+.+++.+.. .|...|++++
T Consensus 1058 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~---d~~v~iwd~~~~~~~~~l~~h~~~v~~~~ 1134 (1249)
T 3sfz_A 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA---DKTAKIWSFDLLSPLHELKGHNGCVRCSA 1134 (1249)
T ss_dssp EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECC---SSCCCEECSSSSSCSBCCCCCSSCEEEEE
T ss_pred EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcC---CCcEEEEECCCcceeeeeccCCCcEEEEE
Confidence 01112 2335788999999999999998 99999999998877654 5678899999
Q ss_pred ECCCCCEEEEEEeecccccccEEEEEec-cceeee-----------eccccEeeEEEeeCCCCCCChh
Q 005315 553 WDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR-----------TLKDHFFQFLWRPRPPSFLTPE 608 (702)
Q Consensus 553 ~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~-----------~~~~~i~~~~w~p~~~~l~s~~ 608 (702)
|+|+|++|++++. |+.|++|++. +..+.. .+...+.+++|+|++++|++++
T Consensus 1135 ~s~dg~~lat~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1135 FSLDGILLATGDD-----NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp ECSSSSEEEEEET-----TSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred ECCCCCEEEEEeC-----CCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 9999999999999 9999999987 444432 2557899999999999998875
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-34 Score=300.12 Aligned_cols=281 Identities=16% Similarity=0.262 Sum_probs=230.8
Q ss_pred CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-C-CCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005315 195 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-H-PQVKLIDFSPGEKYLVTYSSHEPSNPRD 271 (702)
Q Consensus 195 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~-~~v~~i~fSpdg~~l~t~s~d~~~~~~~ 271 (702)
....+.+|...|++++|||+|++||+++.|+ |+|||.. +...+..+. | ..|.+++|+|+|++|++++.+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------- 118 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD------- 118 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TCCEEEEEECSSSCEEEEEECTTSSEEEEEETT-------
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-CCCcceEeecCCccEEEEEECCCCCEEEEEeCC-------
Confidence 3456789999999999999999999999999 8899998 777666663 3 349999999999999999999
Q ss_pred CCccEEEEEEccCC----cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCccccccee
Q 005315 272 ANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKS 347 (702)
Q Consensus 272 ~~~~~i~vwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~ 347 (702)
+.|++|++.++ ...+.+.+|...+. ++.|++ ++.+++++.|+.|++||+.++..+....
T Consensus 119 ---~~v~iw~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 119 ---NICSIYNLKTREGNVRVSRELAGHTGYLS-------------CCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ---CEEEEEETTTCSBSCEEEEEEECCSSCEE-------------EEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ---CeEEEEECccCCCcceeEEEecCCCccEE-------------EEEECC-CCcEEEEECCCcEEEEECCCCcEEEEEc
Confidence 99999999775 35567777776653 789999 8875554449999999999988877666
Q ss_pred eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccc
Q 005315 348 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 348 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
.|...|.+++|+|++++|++ ++.++.+++|. +.+..
T Consensus 182 ~h~~~v~~~~~~~~~~~l~s-----g~~d~~v~~wd--~~~~~------------------------------------- 217 (340)
T 1got_B 182 GHTGDVMSLSLAPDTRLFVS-----GACDASAKLWD--VREGM------------------------------------- 217 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEE-----EETTSCEEEEE--TTTCS-------------------------------------
T ss_pred CCCCceEEEEECCCCCEEEE-----EeCCCcEEEEE--CCCCe-------------------------------------
Confidence 78888999999999998888 66777666543 22111
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC----C
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG----K 503 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~----~ 503 (702)
....+.+|...|.+++|+|++++|++++.|+ .|++||++++. .+..+.. .
T Consensus 218 -----------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~---~v~iwd~~~~~------~~~~~~~~~~~~ 271 (340)
T 1got_B 218 -----------------CRQTFTGHESDINAICFFPNGNAFATGSDDA---TCRLFDLRADQ------ELMTYSHDNIIC 271 (340)
T ss_dssp -----------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTE------EEEEECCTTCCS
T ss_pred -----------------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC---cEEEEECCCCc------EEEEEccCCccc
Confidence 0123447889999999999999999999999 99999997543 3343332 2
Q ss_pred ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 504 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 504 ~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
.+.+++|+|+|++|++++. ||.|++||+.+++.+.. .|...|++++|+|+|++|++++. |+.|+||+
T Consensus 272 ~v~~~~~s~~g~~l~~g~~---d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~-----D~~i~iWd 340 (340)
T 1got_B 272 GITSVSFSKSGRLLLAGYD---DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-----DSFLKIWN 340 (340)
T ss_dssp CEEEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSCEEEEC
T ss_pred ceEEEEECCCCCEEEEECC---CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC-----CccEEecC
Confidence 5899999999999999998 99999999988776654 67789999999999999999999 99999996
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-35 Score=341.05 Aligned_cols=405 Identities=10% Similarity=0.058 Sum_probs=285.4
Q ss_pred cccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceee
Q 005315 161 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 239 (702)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 239 (702)
.+.+..++|+++ .+++...++.+.+|+.. ..+.... ..|...|++++|+| |++||+++.++ |+|||+. +.+.+.
T Consensus 19 ~V~~lafspdg~-~lAsgs~Dg~I~lw~~~-~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~-~~~~~~ 93 (902)
T 2oaj_A 19 KPIAAAFDFTQN-LLAIATVTGEVHIYGQQ-QVEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY-SQKVLT 93 (902)
T ss_dssp CEEEEEEETTTT-EEEEEETTSEEEEECST-TCEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT-TCSEEE
T ss_pred CcEEEEECCCCC-EEEEEeCCCEEEEEeCC-CcEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC-CCcEEE
Confidence 355666777775 56777788899999873 3333222 34778999999999 99999999999 8899999 777777
Q ss_pred eecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEE-----------eeccCCCcccccCCCCCCC
Q 005315 240 RYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM-----------RDFKGSADEFAVGGTGGVA 307 (702)
Q Consensus 240 ~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~-----------~~~~~~~~~~~~~~~~~~~ 307 (702)
.+.+. .|.+++|+|++++|++|+.+ ++|++||+.++++. ..+.+|...+.
T Consensus 94 ~~~~~~~V~~v~~sp~g~~l~sgs~d----------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~-------- 155 (902)
T 2oaj_A 94 TVFVPGKITSIDTDASLDWMLIGLQN----------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV-------- 155 (902)
T ss_dssp EEECSSCEEEEECCTTCSEEEEEETT----------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC--------
T ss_pred EEcCCCCEEEEEECCCCCEEEEEcCC----------CcEEEEECCCCccccceeccccccccccccCCCCeE--------
Confidence 77555 59999999999999999999 99999999888754 22344544442
Q ss_pred CcccceEEEcCCCC-cEEEEec-CCeEEEEecCCcccccceeec------------------cCCeeEEEeCCCCCeEEE
Q 005315 308 GVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSLK------------------VENVMDFSWSPTDPIISL 367 (702)
Q Consensus 308 ~~~w~~~~~s~~dg-~~la~~~-d~~i~v~d~~~~~~~~~~~~~------------------~~~v~~~~~sp~~~~la~ 367 (702)
+++|+| ++ .+|++++ ++.| +||+.+++.+.....+ ...|.+++|+|+|.+|++
T Consensus 156 -----sl~~sp-~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 228 (902)
T 2oaj_A 156 -----SIQWNP-RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT 228 (902)
T ss_dssp -----EEEEET-TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred -----EEEEcc-CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence 799999 75 5777777 9999 9999988765444333 356999999999999999
Q ss_pred EeecCCCCCCCcEEEEEecCCcceeeeeee-----c-------------ccccceeEEc----cCC-CEEEEEEcccc--
Q 005315 368 FVPELGGGNQPARVSLVQIPSKEELRQKNL-----F-------------SVSDCKMYWQ----SSG-DYLAVKVDRYT-- 422 (702)
Q Consensus 368 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~-------------~~~~~~~~~s----~~g-~~l~~~~~~~~-- 422 (702)
++.|+.+++ |+..+.+.+....+ + ......+.|+ |++ ..|++++.+..
T Consensus 229 -----gs~Dg~i~l--Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 229 -----IHEDNSLVF--WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp -----EETTCCEEE--EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred -----EECCCeEEE--EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence 777776555 55555554432211 1 1134566785 444 34555533310
Q ss_pred ---ccccc----------------------------------------------c----------------cccEEEEEE
Q 005315 423 ---KTKKS----------------------------------------------T----------------YTGFELFRI 437 (702)
Q Consensus 423 ---~~~~~----------------------------------------------~----------------~~~~~l~~l 437 (702)
...+. . .+.+.+|++
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence 00000 0 023555654
Q ss_pred ecCCc----------------ceeEE----------------------EecCCCCceeEEEEeeCCcEEEEEEcCCCCCe
Q 005315 438 KERDI----------------PIEVL----------------------ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD 479 (702)
Q Consensus 438 ~~~~~----------------~~~~~----------------------~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~ 479 (702)
..... .+..+ .+.+|...+.+++|+|+|++|++++.|+ +
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dg---t 458 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNG---S 458 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTS---E
T ss_pred CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCC---c
Confidence 22100 00000 1234445555667789999999999999 9
Q ss_pred EEEEEeecccCcCceEEEEEc-------CCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcc--------------
Q 005315 480 ISFYSMRTAQHAGRVSKLTTL-------KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE-------------- 538 (702)
Q Consensus 480 v~i~d~~~~~~~~~~~~~~~~-------~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~-------------- 538 (702)
|++||+.++...........+ +...|.+++|||+|++||+++. ||+|+||++.+++
T Consensus 459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~---DgtV~lwd~~~~~~~~~~~~~~~~~~~ 535 (902)
T 2oaj_A 459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE---TGDVVLFKYEVNQFYSVENRPESGDLE 535 (902)
T ss_dssp EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET---TSCEEEEEEEECCC-------------
T ss_pred EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec---CcEEEEEEecCccccCccccCCCcccc
Confidence 999999765321100011111 2347999999999999999998 9999999998652
Q ss_pred -------------------------------eee--ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceee
Q 005315 539 -------------------------------TMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY 585 (702)
Q Consensus 539 -------------------------------~~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~ 585 (702)
.+. ..|...|++++||||| +||+++. |+.|+|||+.+..+.
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~-----D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA-----AGSLMLIDRRGPAII 609 (902)
T ss_dssp --CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET-----TSEEEEEETTTTEEE
T ss_pred eeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC-----CCcEEEEECCCCeEE
Confidence 122 2577899999999999 9999999 999999999875432
Q ss_pred e---------eccccEeeEEEe-----eCC---CCCCChhhHHHHH
Q 005315 586 R---------TLKDHFFQFLWR-----PRP---PSFLTPEKEEEIA 614 (702)
Q Consensus 586 ~---------~~~~~i~~~~w~-----p~~---~~l~s~~~d~~i~ 614 (702)
. .|...|++++|+ ||| ++|++++.|++|+
T Consensus 610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 1 345679999999 885 7999999998876
No 10
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=309.14 Aligned_cols=332 Identities=15% Similarity=0.178 Sum_probs=257.8
Q ss_pred EEecCCCCCCCcccccCCCcccceEEECCCCc-EEEEEeCCc-eEEeec----CcCcc------eeeeec----------
Q 005315 185 VLWNDARHLKPEPVYKRSYWTESFVQWSPLGT-YLATVHRQG-AAVWGG----ANTFN------RLMRYA---------- 242 (702)
Q Consensus 185 ~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~-~lat~~~~~-i~iw~~----~~~~~------~~~~~~---------- 242 (702)
.+|+. ...........|...|++++|||+|+ +||+++.++ |.||++ . ++. ....+.
T Consensus 28 ~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 28 SSDDL-DGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQ-EGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC----
T ss_pred ccccc-hhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccC-Ccccccccccccccccccccccccc
Confidence 36665 22233333345668999999999999 999999998 889999 7 555 333332
Q ss_pred -CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 243 -HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 243 -~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
|. .|.+++|+|++++|++++.+ +.|++|| .+++.+..+..|...+. +++|+| +
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~i~~-~~~~~~~~~~~~~~~v~-------------~~~~~~-~ 160 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVEN----------GELRLWN-KTGALLNVLNFHRAPIV-------------SVKWNK-D 160 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETT----------SCEEEEE-TTSCEEEEECCCCSCEE-------------EEEECT-T
T ss_pred CCCCceEEEEEcCCCCEEEEEeCC----------CeEEEEe-CCCCeeeeccCCCccEE-------------EEEECC-C
Confidence 34 59999999999999999999 9999999 68899999998877764 799999 9
Q ss_pred CcEEEEec-CCeEEEEecCCcccccceeeccCC---------------eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEE
Q 005315 321 DKYFAKLG-KNMISVYETESFTLIDKKSLKVEN---------------VMDFSWSPTDPIISLFVPELGGGNQPARVSLV 384 (702)
Q Consensus 321 g~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~---------------v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 384 (702)
+++|++++ ++.|++|++.+++.+.....+... +.+++|+|++. +++ ++.+ ..|.+|
T Consensus 161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~--g~i~~~ 232 (425)
T 1r5m_A 161 GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVI-----PGPK--GAIFVY 232 (425)
T ss_dssp SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEE-----ECGG--GCEEEE
T ss_pred CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEE-----EcCC--CeEEEE
Confidence 99999998 999999999988877655555444 88999999866 444 3344 456677
Q ss_pred ecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC
Q 005315 385 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 464 (702)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 464 (702)
+....+.+.....+......+.|+|++++|+++..++. +.+|++..... ...+.+|...|.+++|+|+
T Consensus 233 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~---------i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~ 300 (425)
T 1r5m_A 233 QITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT---------LRIWHGGNGNS---QNCFYGHSQSIVSASWVGD 300 (425)
T ss_dssp ETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC---------EEEECSSSBSC---SEEECCCSSCEEEEEEETT
T ss_pred EcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE---------EEEEECCCCcc---ceEecCCCccEEEEEECCC
Confidence 77776665555545566677899999999999998876 78898775432 2345578999999999999
Q ss_pred CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcc----
Q 005315 465 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE---- 538 (702)
Q Consensus 465 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~---- 538 (702)
+ ++++++.++ .|++||++++. .+..+. ...+.+++|+|+|++|++++. +|.|++||+.+++
T Consensus 301 ~-~l~~~~~d~---~i~i~d~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 301 D-KVISCSMDG---SVRLWSLKQNT------LLALSIVDGVPIFAGRISQDGQKYAVAFM---DGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp T-EEEEEETTS---EEEEEETTTTE------EEEEEECTTCCEEEEEECTTSSEEEEEET---TSCEEEEECHHHHC---
T ss_pred C-EEEEEeCCC---cEEEEECCCCc------EeEecccCCccEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcccee
Confidence 9 999999999 99999996544 444443 457999999999999999998 9999999999777
Q ss_pred ----------------eeee--cccC--ceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 539 ----------------TMAT--AEHF--MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 539 ----------------~~~~--~~~~--~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
.+.. .+.. .|++++|+|+|++|++++. |+.+++|++.|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~g 425 (425)
T 1r5m_A 368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS-----LQEGSVVAIPG 425 (425)
T ss_dssp -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES-----SSCCEEEECCC
T ss_pred eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec-----CceEEEEeecC
Confidence 5554 3433 8999999999999999999 99999999875
No 11
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.2e-34 Score=320.31 Aligned_cols=415 Identities=13% Similarity=0.160 Sum_probs=287.9
Q ss_pred ccccccccCCCCCceEEEEeCCceEEEecCCCCC----CCcccccCCCcc-cceEEECC--CCcEEEEEeCCc-eEEeec
Q 005315 160 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHL----KPEPVYKRSYWT-ESFVQWSP--LGTYLATVHRQG-AAVWGG 231 (702)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~----~~~~~~~~~~~~-v~~v~~Sp--dg~~lat~~~~~-i~iw~~ 231 (702)
.......++|+++.. ++. +++...+|+.. .+ ++...+.+|... |++++||| +|++||+++.++ |+||+.
T Consensus 19 ~~v~~~~~spdg~~l-~~~-~~~~v~v~~~~-~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAI-AYP-CGKSAFVRCLD-DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp TCCCCCEEETTTTEE-EEE-ETTEEEEEECC-SSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred CceeEEEECCCCCEE-EEe-cCCeEEEEECC-CCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 445566667777633 333 36778899984 55 677888999999 99999999 999999999998 889999
Q ss_pred CcCc--------ceeeeec-C-CCeeEEEecCCCCEEEEEcCCCCC----------------------------CCc---
Q 005315 232 ANTF--------NRLMRYA-H-PQVKLIDFSPGEKYLVTYSSHEPS----------------------------NPR--- 270 (702)
Q Consensus 232 ~~~~--------~~~~~~~-~-~~v~~i~fSpdg~~l~t~s~d~~~----------------------------~~~--- 270 (702)
. +. ..+..+. | ..|.+++|+|+|++|++++.+... .|.
T Consensus 96 ~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (615)
T 1pgu_A 96 T-FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 174 (615)
T ss_dssp E-EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred C-CCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCc
Confidence 6 33 3344442 2 348888888888877777654100 000
Q ss_pred ----CCCccEEEEEEccCCcEEeeccCCCc---ccccCCCCCCCCcccceEEEcCCC-CcEEEEec-CCeEEEEecCCcc
Q 005315 271 ----DANRVVINIFDVRTGKVMRDFKGSAD---EFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFT 341 (702)
Q Consensus 271 ----~~~~~~i~vwd~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~w~~~~~s~~d-g~~la~~~-d~~i~v~d~~~~~ 341 (702)
...++.|++||+.+++.+..+..|.. .+. +++|+| + +++|++++ ++.|++|++.+++
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR-------------DVEFSP-DSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE-------------EEEECS-TTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE-------------EEEECC-CCCCEEEEEeCCCeEEEEECCCCC
Confidence 11237899999999999999988876 543 799999 9 99999988 9999999999888
Q ss_pred cccce-e---eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec----ccccceeEEccCCCE
Q 005315 342 LIDKK-S---LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF----SVSDCKMYWQSSGDY 413 (702)
Q Consensus 342 ~~~~~-~---~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~ 413 (702)
.+... . .|...|.+++|+ ++.+|++ ++.++. |.+|++.+.+.+...... ......+.|+ ++.+
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-----~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 311 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFAT-----VGADAT--IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGR 311 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEE-----EETTSE--EEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTE
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEE-----EcCCCc--EEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCe
Confidence 77665 4 677789999999 9999998 555554 556677666655544433 2334455664 8889
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEe---------------------cCCCCceeEEEEeeCCcEEEEEE
Q 005315 414 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL---------------------DNKNDKIIAFAWEPKGHRFAVIH 472 (702)
Q Consensus 414 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l---------------------~~h~~~v~~~~~sp~g~~l~~~~ 472 (702)
++++..++....+.......+..+.....++..+.+ .+|...|.+++| +++..|++++
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~ 390 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSIS 390 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEE
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEe
Confidence 999888776222211111111111111111111111 234555555555 3355555555
Q ss_pred cCCCCCeEEEEEeecccC------------------------------------------------------------cC
Q 005315 473 GDSPRPDISFYSMRTAQH------------------------------------------------------------AG 492 (702)
Q Consensus 473 ~d~~~~~v~i~d~~~~~~------------------------------------------------------------~~ 492 (702)
.++ .|++|++.++.. ..
T Consensus 391 ~d~---~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 467 (615)
T 1pgu_A 391 WDD---TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467 (615)
T ss_dssp TTT---EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred CCC---CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence 555 555555432110 00
Q ss_pred ce--------EEE-EEcCC--CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeec---ccCceeeeEECC---
Q 005315 493 RV--------SKL-TTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA---EHFMATDVEWDP--- 555 (702)
Q Consensus 493 ~~--------~~~-~~~~~--~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~---~~~~i~~~~~sp--- 555 (702)
.+ ... ..+.. ..+.+++|+|+|++|++++. ||.|++||+.+++.+... |...|++++|+|
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV---MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC---CCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccc
Confidence 00 011 33333 36899999999999999998 999999999988887753 678999999999
Q ss_pred -------CCCEEEEEEeecccccccEEEEEecc--ceeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 556 -------TGRYVATAVTSVHEMENGFNIWSFNG--KLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 556 -------dg~~l~t~s~~~~~~d~~v~iw~~~g--~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
+|++|++++. |+.|++|++.. ..+... |...+.+++|+|+++ |++++.|+.|+
T Consensus 545 ~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~ 608 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSL-----DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIK 608 (615)
T ss_dssp -----CCSCCEEEEEET-----TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEE
T ss_pred cccccccCCCEEEEEcC-----CCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEE
Confidence 9999999999 99999999985 344433 668999999999999 99998887653
No 12
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7e-35 Score=354.50 Aligned_cols=410 Identities=13% Similarity=0.156 Sum_probs=305.0
Q ss_pred cccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECC--CCcEEEEEeCCc-eEEeecCcCcce
Q 005315 161 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSP--LGTYLATVHRQG-AAVWGGANTFNR 237 (702)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Sp--dg~~lat~~~~~-i~iw~~~~~~~~ 237 (702)
.+.+..++|+++ .+++.+.++.+.+|+. ..++....+.+|...|++++|+| ++.++++++.++ |.+||.. ++..
T Consensus 659 ~v~~~~~s~~~~-~l~s~~~d~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~~ 735 (1249)
T 3sfz_A 659 EVLCCAFSSDDS-YIATCSADKKVKIWDS-ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKEC 735 (1249)
T ss_dssp CEEEEEECTTSS-EEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT-SSSE
T ss_pred CEEEEEEecCCC-EEEEEeCCCeEEEEEC-CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC-Ccch
Confidence 345556677664 5566677888889999 57788888999999999999999 556899999999 8899999 7776
Q ss_pred eeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCccc----------------c
Q 005315 238 LMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEF----------------A 299 (702)
Q Consensus 238 ~~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~----------------~ 299 (702)
+..+ .|. .|.+++|+|+|++|++++.+ +.|++||+.+++....+....... .
T Consensus 736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~d----------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPDDELLASCSAD----------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805 (1249)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEESS----------SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred hheecCCCCCEEEEEEecCCCEEEEEECC----------CeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence 6665 344 59999999999999999999 999999998887665543221000 0
Q ss_pred cCC----------------------------CCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeecc
Q 005315 300 VGG----------------------------TGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 350 (702)
Q Consensus 300 ~~~----------------------------~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~ 350 (702)
... .+.... ..++.|+| ++.++++++ ++.|.+|++.++..+.....|.
T Consensus 806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~ 882 (1249)
T 3sfz_A 806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST--IQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHL 882 (1249)
T ss_dssp BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSC--CCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCc--eEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCc
Confidence 000 000011 12689999 999999999 9999999999988877777788
Q ss_pred CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEec--------------------------------------------
Q 005315 351 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI-------------------------------------------- 386 (702)
Q Consensus 351 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~-------------------------------------------- 386 (702)
..|.+++|+|+++.|++ ++.++.+++|....
T Consensus 883 ~~v~~v~~spdg~~l~s-----~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1249)
T 3sfz_A 883 SWVHGVMFSPDGSSFLT-----ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957 (1249)
T ss_dssp SCEEEEEECTTSSEEEE-----EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE
T ss_pred cceEEEEECCCCCEEEE-----EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEE
Confidence 88999999999999998 66777777665221
Q ss_pred ---------------------------------CCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccc-----
Q 005315 387 ---------------------------------PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST----- 428 (702)
Q Consensus 387 ---------------------------------~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~----- 428 (702)
.+.+.+.....+......+.|+|+|++|++++.++....|..
T Consensus 958 ~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 111111111122334456778888888888877665322211
Q ss_pred --------------------------cccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEE
Q 005315 429 --------------------------YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 482 (702)
Q Consensus 429 --------------------------~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 482 (702)
.+.+.+|++..... ...+.+|.+.|.+++|+|+|++|++++.|+ .|++
T Consensus 1038 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~---~v~i 1111 (1249)
T 3sfz_A 1038 VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI---ERDFTCHQGTVLSCAISSDATKFSSTSADK---TAKI 1111 (1249)
T ss_dssp ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC---CEEEECCSSCCCCEEECSSSSSCEEECCSS---CCCE
T ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce---eEEEcccCCcEEEEEECCCCCEEEEEcCCC---cEEE
Confidence 11234444433221 134557899999999999999999999999 8999
Q ss_pred EEeecccCcCceEEEEEcCC--CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-----------cccCcee
Q 005315 483 YSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----------AEHFMAT 549 (702)
Q Consensus 483 ~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-----------~~~~~i~ 549 (702)
|++.++. .+..+.+ ..+++++|||+|++|++++. ||.|++||+.+++.+.. .|...|+
T Consensus 1112 wd~~~~~------~~~~l~~h~~~v~~~~~s~dg~~lat~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1182 (1249)
T 3sfz_A 1112 WSFDLLS------PLHELKGHNGCVRCSAFSLDGILLATGDD---NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182 (1249)
T ss_dssp ECSSSSS------CSBCCCCCSSCEEEEEECSSSSEEEEEET---TSCCCEEESSSSCCCCCCCCCC-------CCSCCC
T ss_pred EECCCcc------eeeeeccCCCcEEEEEECCCCCEEEEEeC---CCEEEEEECCCCceEEEeccccccccccccCceEE
Confidence 9997654 3344443 46899999999999999998 99999999998776553 3667899
Q ss_pred eeEECCCCCEEEEEEeecccccccEEEEEec-cceeeee--ccccEeeEEEeeCCCCCCChhhHHHH
Q 005315 550 DVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 550 ~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
+++|+|||++|+++ ++.+++|++. |..+... +...+.++.|+|+++.|++++.++.+
T Consensus 1183 ~l~fs~dg~~l~s~-------~g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v 1242 (1249)
T 3sfz_A 1183 DVCFSPDSKTLVSA-------GGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGIL 1242 (1249)
T ss_dssp EEEECTTSSCEEEE-------SSSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCE
T ss_pred EEEECCCCCEEEEC-------CCeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEE
Confidence 99999999999876 3699999987 4444433 55789999999999999998877644
No 13
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.6e-35 Score=305.69 Aligned_cols=288 Identities=16% Similarity=0.249 Sum_probs=223.6
Q ss_pred CCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCC
Q 005315 193 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNP 269 (702)
Q Consensus 193 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~~~ 269 (702)
......+.+|...|++++|||+|++||+++.|+ |+|||.. +...+..+ +...|.+++|+|+|++|++++.|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~-~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d----- 129 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL-TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD----- 129 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEEECCCTTCCCCEECTTSSEEEECCSS-----
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCccceEEecCCCCEEEEEECCCCCEEEEeeCC-----
Confidence 444566889999999999999999999999999 8899998 77666655 34459999999999999999999
Q ss_pred cCCCccEEEEEEccCCc-------EEeeccCCCcccccCCCCCCCCcccceEEEcCCC-CcEEEEec-CCeEEEEecCCc
Q 005315 270 RDANRVVINIFDVRTGK-------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESF 340 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d-g~~la~~~-d~~i~v~d~~~~ 340 (702)
+.|+||++.+.. ..+.+.+|...+. ++.|+| + +..|++++ |++|++||+.++
T Consensus 130 -----~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~-------------~~~~~~-~~~~~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 130 -----SACSIFNLSSQADRDGNMPVSRVLTGHKGYAS-------------SCQYVP-DQETRLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp -----SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC-------------CCBCCS-SSSSCEEEECTTSCEEEECTTTC
T ss_pred -----CcEEEEECCCCccccCCccceeeccCCCcceE-------------EEEEec-CCCCEEEEECCCCcEEEEEcCCC
Confidence 999999986532 3445666665542 567888 6 45688888 999999999987
Q ss_pred ccccce-----eeccCCeeEEEeCC-CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEE
Q 005315 341 TLIDKK-----SLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYL 414 (702)
Q Consensus 341 ~~~~~~-----~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 414 (702)
..+... ..|...|.+++|+| ++.+|++ ++.|+.+++|
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-----gs~D~~v~~w-------------------------------- 233 (380)
T 3iz6_a 191 QRISIFGSEFPSGHTADVLSLSINSLNANMFIS-----GSCDTTVRLW-------------------------------- 233 (380)
T ss_dssp CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE-----EETTSCEEEE--------------------------------
T ss_pred cEEEEeecccCCCCccCeEEEEeecCCCCEEEE-----EECCCeEEEE--------------------------------
Confidence 765432 23445577777765 5566666 5555554443
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCce
Q 005315 415 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 494 (702)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 494 (702)
+++..... ...+.+|.+.|.+++|+|+|++|++++.|+ .|++||++++.
T Consensus 234 ---------------------d~~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~---~i~lwd~~~~~----- 282 (380)
T 3iz6_a 234 ---------------------DLRITSRA--VRTYHGHEGDINSVKFFPDGQRFGTGSDDG---TCRLFDMRTGH----- 282 (380)
T ss_dssp ---------------------ETTTTCCC--CEEECCCSSCCCEEEECTTSSEEEEECSSS---CEEEEETTTTE-----
T ss_pred ---------------------ECCCCCcc--eEEECCcCCCeEEEEEecCCCeEEEEcCCC---eEEEEECCCCc-----
Confidence 33211111 123457899999999999999999999999 99999997654
Q ss_pred EEEEEcCCC---------ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee------cccCceeeeEECCCCCE
Q 005315 495 SKLTTLKGK---------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT------AEHFMATDVEWDPTGRY 559 (702)
Q Consensus 495 ~~~~~~~~~---------~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~------~~~~~i~~~~~spdg~~ 559 (702)
.+..+..+ .+++++|+|+|++|++++. ||.|++||+..++.+.. .|...|++++|+|+|++
T Consensus 283 -~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 283 -QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS---NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp -EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT---TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred -EEEEecccccccccccCceEEEEECCCCCEEEEEEC---CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence 33333221 3789999999999999988 99999999987766543 46688999999999999
Q ss_pred EEEEEeecccccccEEEEEeccc
Q 005315 560 VATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 560 l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
|++++. |+.++||++.+.
T Consensus 359 l~sgs~-----D~~i~iW~~~~~ 376 (380)
T 3iz6_a 359 LCTGSW-----DKNLKIWAFSGH 376 (380)
T ss_dssp EEEECT-----TSCEEEEECCSS
T ss_pred EEEeeC-----CCCEEEEecCCC
Confidence 999999 999999998864
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.4e-34 Score=295.23 Aligned_cols=281 Identities=13% Similarity=0.205 Sum_probs=227.1
Q ss_pred CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005315 195 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRD 271 (702)
Q Consensus 195 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~fSpdg~~l~t~s~d~~~~~~~ 271 (702)
....+.+|...|++++|+|+|++||+++.|+ |+|||.. +......+. ...|.+++|+|+|++|++++.|
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d------- 127 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF-TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD------- 127 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCEEEECTTSSEEEEESTT-------
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCcceEEecCCCCEEEEEECCCCCEEEEeeCC-------
Confidence 3456789999999999999999999999999 8899988 666555553 3459999999999999999999
Q ss_pred CCccEEEEEEccCC------cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccc
Q 005315 272 ANRVVINIFDVRTG------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID 344 (702)
Q Consensus 272 ~~~~~i~vwd~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~ 344 (702)
+.+++|++... .....+.+|...+. ++.|+| ++.+|++++ |++|++||+.+++.+.
T Consensus 128 ---~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~ 190 (354)
T 2pbi_B 128 ---NKCSVYPLTFDKNENMAAKKKSVAMHTNYLS-------------ACSFTN-SDMQILTASGDGTCALWDVESGQLLQ 190 (354)
T ss_dssp ---SEEEEEECCCCTTCCSGGGCEEEEECSSCEE-------------EEEECS-SSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ---CCEEEEEEeccccccccccceeeeccCCcEE-------------EEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEE
Confidence 99999998643 23445555655543 789999 999999988 9999999999998887
Q ss_pred ceeeccCCeeEEEeCCC--CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccc
Q 005315 345 KKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 422 (702)
Q Consensus 345 ~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 422 (702)
....|...|.+++|+|+ +++|++ ++.|+.+++|. +.+.+
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~s-----gs~Dg~v~~wd--~~~~~-------------------------------- 231 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVS-----GGCDKKAMVWD--MRSGQ-------------------------------- 231 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEE-----EETTSCEEEEE--TTTCC--------------------------------
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEE-----EeCCCeEEEEE--CCCCc--------------------------------
Confidence 77777788888888774 577777 65666655442 22111
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC
Q 005315 423 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG 502 (702)
Q Consensus 423 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 502 (702)
....+.+|...|.+++|+|++++|++++.|+ .|++||++... .+..+..
T Consensus 232 ----------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~---~v~lwd~~~~~------~~~~~~~ 280 (354)
T 2pbi_B 232 ----------------------CVQAFETHESDVNSVRYYPSGDAFASGSDDA---TCRLYDLRADR------EVAIYSK 280 (354)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTE------EEEEECC
T ss_pred ----------------------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCC---eEEEEECCCCc------EEEEEcC
Confidence 0122447889999999999999999999999 99999997543 3333322
Q ss_pred ----CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEE
Q 005315 503 ----KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNI 576 (702)
Q Consensus 503 ----~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~i 576 (702)
..+.+++|+|+|++|++++. |+.|++||+.+++.+.. .|...|++++|+|+|++|++++. |+.++|
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~---d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~-----D~~v~v 352 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYN---DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW-----DHTLRV 352 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET-----TSEEEE
T ss_pred CCcccceeEEEEeCCCCEEEEEEC---CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC-----CCCEEe
Confidence 25789999999999999998 99999999988876654 67789999999999999999999 999999
Q ss_pred EE
Q 005315 577 WS 578 (702)
Q Consensus 577 w~ 578 (702)
|+
T Consensus 353 W~ 354 (354)
T 2pbi_B 353 WA 354 (354)
T ss_dssp EC
T ss_pred cC
Confidence 95
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9e-34 Score=294.08 Aligned_cols=293 Identities=15% Similarity=0.303 Sum_probs=226.9
Q ss_pred CcccccCCCc-ccceEEECCCCcEEEEEeCCc-eEEeecCcCcceee--e--ecCC-CeeEEEecCCCCEEEEEcCCCCC
Q 005315 195 PEPVYKRSYW-TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM--R--YAHP-QVKLIDFSPGEKYLVTYSSHEPS 267 (702)
Q Consensus 195 ~~~~~~~~~~-~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~--~--~~~~-~v~~i~fSpdg~~l~t~s~d~~~ 267 (702)
....+++|.. .|++++|||+|++||+++.|+ |+||+.. +..... . ..|. .|.+++|||+|++|++++.|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D--- 82 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTE-GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD--- 82 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEE-TTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT---
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcC-CCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC---
Confidence 3445678887 899999999999999999999 8899998 543221 1 2344 59999999999999999999
Q ss_pred CCcCCCccEEEEEEccCC--cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccc--
Q 005315 268 NPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL-- 342 (702)
Q Consensus 268 ~~~~~~~~~i~vwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~-- 342 (702)
++|+||++.++ +++..+.+|...+. +++|+| ++++|++++ |+.|++|++.++..
T Consensus 83 -------~~v~iw~~~~~~~~~~~~~~~h~~~v~-------------~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 83 -------ATTCIWKKNQDDFECVTTLEGHENEVK-------------SVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp -------SCEEEEEECCC-EEEEEEECCCSSCEE-------------EEEECT-TSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred -------CcEEEEEccCCCeEEEEEccCCCCCce-------------EEEEeC-CCCEEEEEECCCeEEEEECCCCCCeE
Confidence 99999998776 45778888887764 799999 999999999 99999999986532
Q ss_pred -ccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccc
Q 005315 343 -IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 421 (702)
Q Consensus 343 -~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 421 (702)
+.....|...|.+++|+|++.+|++ ++.++.+++|..... ..
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~~~~l~s-----~s~d~~i~~w~~~~~------------------------~~-------- 184 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPSQELLAS-----ASYDDTVKLYREEED------------------------DW-------- 184 (345)
T ss_dssp EEEEECCCCSCEEEEEECSSSSCEEE-----EETTSCEEEEEEETT------------------------EE--------
T ss_pred EEEEecCcCCCeEEEEECCCCCEEEE-----EeCCCcEEEEEecCC------------------------CE--------
Confidence 2233346667888999998888888 667776665543210 00
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCc---------C
Q 005315 422 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA---------G 492 (702)
Q Consensus 422 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~---------~ 492 (702)
.....+.+|...|.+++|+|+|++|++++.|+ .|++|+....... .
T Consensus 185 ----------------------~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~---~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 185 ----------------------VCCATLEGHESTVWSLAFDPSGQRLASCSDDR---TVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp ----------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEEEECTTCTTCCCCC---C
T ss_pred ----------------------EEEEEecCCCCceEEEEECCCCCEEEEEeCCC---eEEEeccccCCCCccceeeccCC
Confidence 01133557899999999999999999999999 9999997543211 1
Q ss_pred ceEEEEEcC---CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcc--------ee---eecccCceeeeEECCCCC
Q 005315 493 RVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE--------TM---ATAEHFMATDVEWDPTGR 558 (702)
Q Consensus 493 ~~~~~~~~~---~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~--------~~---~~~~~~~i~~~~~spdg~ 558 (702)
....+..+. ...+.+++|+|++..|++++. |+.|++|+..... .. ...|...|++++|+|++.
T Consensus 240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACG---DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP 316 (345)
T ss_dssp EEEEEEEECSSCSSCEEEEEECTTTCCEEEEET---TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred ccceeEEecCCCCCcEEEEEEecCCCEEEEEeC---CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence 122344443 347999999999999999998 9999999987432 11 125678899999999984
Q ss_pred -EEEEEEeecccccccEEEEEeccc
Q 005315 559 -YVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 559 -~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
+||+++. |+.|++|++...
T Consensus 317 ~~laS~s~-----Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 317 GLLASCSD-----DGEVAFWKYQRP 336 (345)
T ss_dssp TEEEEEET-----TSCEEEEEECC-
T ss_pred eEEEEcCC-----CCcEEEEEecCC
Confidence 8999999 999999998743
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.1e-34 Score=296.54 Aligned_cols=301 Identities=11% Similarity=0.122 Sum_probs=208.6
Q ss_pred ceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeC------Cc-eEEeecCcCcceee-----e
Q 005315 173 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR------QG-AAVWGGANTFNRLM-----R 240 (702)
Q Consensus 173 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~------~~-i~iw~~~~~~~~~~-----~ 240 (702)
..++...+......|+.+. . ....|...|++|+|||||++||+++. ++ +.+|+.. +..... .
T Consensus 17 ~~~~~~~g~~~~~~w~~p~-~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~-~~~~~~~~~~~~ 90 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPV-T----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP-EGAPNESLCTAG 90 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC-C---CGGGCSEE
T ss_pred ceEEecCCCccccccCCCC-C----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC-CCCcceeEeccc
Confidence 3455556666667898742 2 23578999999999999999999997 44 6677766 433222 1
Q ss_pred ecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeec----cCCCcccccCCCCCCCCcccceEE
Q 005315 241 YAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF----KGSADEFAVGGTGGVAGVSWPVFR 315 (702)
Q Consensus 241 ~~~-~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~w~~~~ 315 (702)
..| ..|.+++|+|++++| +++.+ ++|+|||+.+++.+... .+|...+. +++
T Consensus 91 ~~~~~~V~~~~~s~d~~~l-~~s~d----------g~v~lWd~~~~~~~~~~~~~~~~h~~~V~-------------~v~ 146 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGIL-VASDS----------GAVELWEILEKESLLVNKFAKYEHDDIVK-------------TLS 146 (357)
T ss_dssp EECSSCEEEEEEETTTEEE-EEETT----------SCEEEC--------CCCCEEECCCSSCEE-------------EEE
T ss_pred CCCCCCEEEEEEcCCCCEE-EEECC----------CEEEEeeccccceeEEEeeccCCCCCCEE-------------EEE
Confidence 233 459999999998755 56778 89999999888765432 35555553 799
Q ss_pred EcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCC-eEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 316 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 316 ~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
|+| ++++|++++ |+.|++||+.+++.+.....|...|.+++|+|++. ++++ ++.++.+++| ++.+.+...
T Consensus 147 ~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s-----~~~dg~v~~w--d~~~~~~~~ 218 (357)
T 4g56_B 147 VFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLS-----CGEDGRILLW--DTRKPKPAT 218 (357)
T ss_dssp ECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEE-----EETTSCEEEC--CTTSSSCBC
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeee-----eccCCceEEE--ECCCCceee
Confidence 999 999999998 99999999999988877777888899999999975 5666 5566665543 332222111
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC-CcEEEEEE
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIH 472 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~ 472 (702)
.+.+..|...+.+++|+|+ +.+|++++
T Consensus 219 ----------------------------------------------------~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 219 ----------------------------------------------------RIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp ----------------------------------------------------BCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred ----------------------------------------------------eeeeccccccccchhhhhcccceEEEee
Confidence 0112245678899999997 46788888
Q ss_pred cCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCC-CEEEEEeccCCCceEEEEECCCcceeee-cccCce
Q 005315 473 GDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMA 548 (702)
Q Consensus 473 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg-~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~~i 548 (702)
.|+ .|++||++++. .+..+. ...|++++|+|+| ++|++++. |+.|+|||+.+++++.. .|...|
T Consensus 247 ~d~---~i~~wd~~~~~------~~~~~~~~~~~v~~l~~sp~~~~~lasgs~---D~~i~iwd~~~~~~~~~~~H~~~V 314 (357)
T 4g56_B 247 ETG---NVSLVNIKNPD------SAQTSAVHSQNITGLAYSYHSSPFLASISE---DCTVAVLDADFSEVFRDLSHRDFV 314 (357)
T ss_dssp SSS---CEEEEESSCGG------GCEEECCCSSCEEEEEECSSSSCCEEEEET---TSCEEEECTTSCEEEEECCCSSCE
T ss_pred ccc---ceeEEECCCCc------EeEEEeccceeEEEEEEcCCCCCEEEEEeC---CCEEEEEECCCCcEeEECCCCCCE
Confidence 888 89999997654 233443 4579999999998 57888887 99999999999888765 566899
Q ss_pred eeeEECC-CCCEEEEEEeecccccccEEEEEec
Q 005315 549 TDVEWDP-TGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 549 ~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
++++|+| ++++|++++. |+.|++|++.
T Consensus 315 ~~vafsP~d~~~l~s~s~-----Dg~v~iW~~~ 342 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGW-----DHKVLHHHLP 342 (357)
T ss_dssp EEEEECSSSTTEEEEEET-----TSCEEEEECC
T ss_pred EEEEEeCCCCCEEEEEcC-----CCeEEEEECC
Confidence 9999999 8999999999 9999999986
No 17
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-33 Score=290.09 Aligned_cols=317 Identities=10% Similarity=0.099 Sum_probs=250.2
Q ss_pred CCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005315 202 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 279 (702)
Q Consensus 202 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v 279 (702)
|...+.+++|||||+++|++..++ +.+|........+..+.|.. |.+++|+|++++|++++ + +.|++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-d----------g~i~i 76 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K----------GCVKV 76 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-B----------SEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-C----------CeEEE
Confidence 346789999999999999888766 66776653455555566664 99999999999999999 8 89999
Q ss_pred EEccCCcEEeecc-----CCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc--cccceeeccC
Q 005315 280 FDVRTGKVMRDFK-----GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT--LIDKKSLKVE 351 (702)
Q Consensus 280 wd~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~--~~~~~~~~~~ 351 (702)
||+.++.....+. .|...+. +++|+| ++++|++++ ++.|.+|++.+++ .......+..
T Consensus 77 w~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 142 (337)
T 1gxr_A 77 WDISHPGNKSPVSQLDCLNRDNYIR-------------SCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142 (337)
T ss_dssp EETTSTTCCSCSEEEECSCTTSBEE-------------EEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS
T ss_pred EECCCCCceeeeecccccCCCCcEE-------------EEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC
Confidence 9998876433322 4444442 789999 999999988 9999999999876 3333444666
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 431 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 431 (702)
.+.+++|+|++++|++ ++.++. |.+|++.+.+.+.....+......+.|+|+|.+|++++.++.
T Consensus 143 ~i~~~~~~~~~~~l~~-----~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--------- 206 (337)
T 1gxr_A 143 ACYALAISPDSKVCFS-----CCSDGN--IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT--------- 206 (337)
T ss_dssp CEEEEEECTTSSEEEE-----EETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE---------
T ss_pred ceEEEEECCCCCEEEE-----EeCCCc--EEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc---------
Confidence 7999999999999998 555554 566777776666555555566677899999999999988876
Q ss_pred EEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEc
Q 005315 432 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 511 (702)
Q Consensus 432 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 511 (702)
+.+|++..... ... + .|...+.+++|+|++++|++++.++ .|++|++.++.. .....+...+.+++|+
T Consensus 207 i~~~d~~~~~~-~~~--~-~~~~~v~~~~~s~~~~~l~~~~~~~---~i~~~~~~~~~~-----~~~~~~~~~v~~~~~~ 274 (337)
T 1gxr_A 207 VRSWDLREGRQ-LQQ--H-DFTSQIFSLGYCPTGEWLAVGMESS---NVEVLHVNKPDK-----YQLHLHESCVLSLKFA 274 (337)
T ss_dssp EEEEETTTTEE-EEE--E-ECSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSSCE-----EEECCCSSCEEEEEEC
T ss_pred EEEEECCCCce-Eee--e-cCCCceEEEEECCCCCEEEEEcCCC---cEEEEECCCCCe-----EEEcCCccceeEEEEC
Confidence 78888765322 112 2 4588999999999999999999998 899999975431 1112224479999999
Q ss_pred cCCCEEEEEeccCCCceEEEEECCCcceeee-cccCceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 512 PSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 512 pdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
|+|++|++++. +|.|++|++.+++.+.. .+...+++++|+|+|++|++++. |+.+++|++
T Consensus 275 ~~~~~l~~~~~---dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~ 335 (337)
T 1gxr_A 275 YCGKWFVSTGK---DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG-----DKKATVYEV 335 (337)
T ss_dssp TTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-----TSCEEEEEE
T ss_pred CCCCEEEEecC---CCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecC-----CCeEEEEEE
Confidence 99999999998 99999999998877754 46688999999999999999999 999999996
No 18
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=334.90 Aligned_cols=361 Identities=10% Similarity=0.115 Sum_probs=261.2
Q ss_pred cCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005315 200 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 277 (702)
Q Consensus 200 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i 277 (702)
.+|...|++++|||+|++||+|+.++ |+||+.. +.+.+..+.|. .|.+++|+| |++|++++.| ++|
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~-~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D----------~~v 81 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQ-QVEVVIKLEDRSAIKEMRFVK-GIYLVVINAK----------DTV 81 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECST-TCEEEEECSSCCCEEEEEEET-TTEEEEEETT----------CEE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCC-CcEEEEEcCCCCCEEEEEEcC-CCEEEEEECc----------CeE
Confidence 47889999999999999999999999 8899998 77766666555 499999999 8899999999 999
Q ss_pred EEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccc-----------cc
Q 005315 278 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI-----------DK 345 (702)
Q Consensus 278 ~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~-----------~~ 345 (702)
+|||+.+++++..+..+ ..+. +++|+| ++++|++++ ||.|++||+.++.+. ..
T Consensus 82 ~lWd~~~~~~~~~~~~~-~~V~-------------~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~ 146 (902)
T 2oaj_A 82 YVLSLYSQKVLTTVFVP-GKIT-------------SIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFF 146 (902)
T ss_dssp EEEETTTCSEEEEEECS-SCEE-------------EEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred EEEECCCCcEEEEEcCC-CCEE-------------EEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccc
Confidence 99999999999888643 3332 799999 999999999 999999999987653 12
Q ss_pred eeeccCCeeEEEeCCCC-CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec------------------ccccceeE
Q 005315 346 KSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF------------------SVSDCKMY 406 (702)
Q Consensus 346 ~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 406 (702)
...|...|.+++|+|++ ..|++ ++.++. | +|++.+.+.+.....+ ......+.
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~-----g~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLI-----SYEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEE-----ECSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred cccCCCCeEEEEEccCCCCEEEE-----EeCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence 23466789999999974 66776 555544 5 7777766554433222 23456789
Q ss_pred EccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe---c-------------CCCCceeEEEEee----CC-
Q 005315 407 WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL---D-------------NKNDKIIAFAWEP----KG- 465 (702)
Q Consensus 407 ~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l---~-------------~h~~~v~~~~~sp----~g- 465 (702)
|+|+|.+|++++.++. +.+|++.... .+....+ . .|...|.+++|+| ++
T Consensus 219 fspdg~~lasgs~Dg~---------i~lWd~~~g~-~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~ 288 (902)
T 2oaj_A 219 YHPNSLHIITIHEDNS---------LVFWDANSGH-MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYT 288 (902)
T ss_dssp ECTTSSEEEEEETTCC---------EEEEETTTCC-EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEE
T ss_pred EcCCCCEEEEEECCCe---------EEEEECCCCc-EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCC
Confidence 9999999999999987 7888876532 2111111 1 1345788999965 33
Q ss_pred cEEEEEEcCCC--CCeEEEEEeecc----------------------------c-------------------Cc-----
Q 005315 466 HRFAVIHGDSP--RPDISFYSMRTA----------------------------Q-------------------HA----- 491 (702)
Q Consensus 466 ~~l~~~~~d~~--~~~v~i~d~~~~----------------------------~-------------------~~----- 491 (702)
..+++++.+.. ...+.+|++... . ..
T Consensus 289 ~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~ 368 (902)
T 2oaj_A 289 SLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLIL 368 (902)
T ss_dssp EEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEE
T ss_pred EEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEE
Confidence 34555544321 114556653100 0 00
Q ss_pred -----CceEEEE--------E-----------------------------------------cCCC--ceeEEEEccCCC
Q 005315 492 -----GRVSKLT--------T-----------------------------------------LKGK--QANALFWSPSGR 515 (702)
Q Consensus 492 -----~~~~~~~--------~-----------------------------------------~~~~--~v~~~~~spdg~ 515 (702)
..+.... . +.++ .+..++|+|+|+
T Consensus 369 ~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~ 448 (902)
T 2oaj_A 369 LILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT 448 (902)
T ss_dssp EEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE
T ss_pred EEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc
Confidence 0000000 0 0111 123456789999
Q ss_pred EEEEEeccCCCceEEEEECCCcceee-------------ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc
Q 005315 516 FIVLAGLKGFNGQLEFYNVDELETMA-------------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 516 ~l~~~~~~~~dg~v~i~d~~~~~~~~-------------~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
+|++++. |++|++||+.++.+.. ..|...|++++|||||++||+++. |++|+||++.+.
T Consensus 449 ~laSgs~---DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~-----DgtV~lwd~~~~ 520 (902)
T 2oaj_A 449 AFITGHS---NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE-----TGDVVLFKYEVN 520 (902)
T ss_dssp EEEEEET---TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET-----TSCEEEEEEEEC
T ss_pred EEEEecC---CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec-----CcEEEEEEecCc
Confidence 9999998 9999999998764321 145678999999999999999999 999999999743
Q ss_pred e----------------------------------------------eee--eccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 583 L----------------------------------------------LYR--TLKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 583 ~----------------------------------------------l~~--~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
. +.. .|.+.|++++|+|+| +|++++.|+.|+
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~ 599 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLM 599 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEE
Confidence 1 222 266899999999999 999999998775
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.3e-33 Score=283.57 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=229.2
Q ss_pred CCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCc
Q 005315 194 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPR 270 (702)
Q Consensus 194 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~fSpdg~~l~t~s~d~~~~~~ 270 (702)
+....+.+|...|++++|||+|++||+++.++ |+|||.. +...+..+. ...|.+++|+|++++|++++.|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d------ 76 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE-TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------ 76 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-CCceeEEeeccCCcEEEEEEeCCCCEEEEECCC------
Confidence 44567889999999999999999999999999 8899999 777766663 3359999999999999999999
Q ss_pred CCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc-cccceee
Q 005315 271 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSL 348 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~-~~~~~~~ 348 (702)
++|++||+.+++.+..+.+|...+. +++|+| ++++|++++ |++|++||+.++. +......
T Consensus 77 ----~~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 77 ----FRIRVFNYNTGEKVVDFEAHPDYIR-------------SIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp ----SEEEEEETTTCCEEEEEECCSSCEE-------------EEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred ----CEEEEEECCCCcEEEEEeCCCCcEE-------------EEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999988764 799999 999999999 9999999998763 3333445
Q ss_pred ccCCeeEEEeCC-CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccc
Q 005315 349 KVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 349 ~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
|...|.+++|+| ++..|++ ++.|+.+++|. +......
T Consensus 139 h~~~v~~v~~~p~~~~~l~s-----gs~D~~v~iwd--~~~~~~~----------------------------------- 176 (304)
T 2ynn_A 139 HEHFVMCVAFNPKDPSTFAS-----GCLDRTVKVWS--LGQSTPN----------------------------------- 176 (304)
T ss_dssp CCSCEEEEEECTTCTTEEEE-----EETTSEEEEEE--TTCSSCS-----------------------------------
T ss_pred cCCcEEEEEECCCCCCEEEE-----EeCCCeEEEEE--CCCCCcc-----------------------------------
Confidence 777899999999 5678887 66777666543 2211100
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEee--CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP--KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 503 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp--~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 503 (702)
. ....+|...+..++|+| ++.+|++++.|+ .|++||++++. .+.++.+|
T Consensus 177 -----------------~-~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~---~i~iWd~~~~~------~~~~~~~h~~ 229 (304)
T 2ynn_A 177 -----------------F-TLTTGQERGVNYVDYYPLPDKPYMITASDDL---TIKIWDYQTKS------CVATLEGHMS 229 (304)
T ss_dssp -----------------E-EEECCCTTCEEEEEECCSTTCCEEEEEETTS---EEEEEETTTTE------EEEEEECCSS
T ss_pred -----------------c-eeccCCcCcEEEEEEEEcCCCCEEEEEcCCC---eEEEEeCCCCc------cceeeCCCCC
Confidence 0 00113456788888887 778999999999 99999997654 56666554
Q ss_pred ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCC--EEEEEEeecccccccEEEEEe
Q 005315 504 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGR--YVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 504 ~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~--~l~t~s~~~~~~d~~v~iw~~ 579 (702)
.+..++|+|++++|++++. ||.|++||+.+++++.+ .+...+.+++|+|+|+ ++++++ ++++.+|++
T Consensus 230 ~v~~~~~~p~~~~l~s~s~---Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~------~~g~~~~~~ 300 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSE---DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF------DNGFTVLSL 300 (304)
T ss_dssp CEEEEEECSSSSEEEEEET---TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE------TTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEcC---CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec------CCceEEEEe
Confidence 7899999999999999998 99999999999888766 4457889999999986 455554 578888887
Q ss_pred cc
Q 005315 580 NG 581 (702)
Q Consensus 580 ~g 581 (702)
..
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 20
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=308.15 Aligned_cols=322 Identities=13% Similarity=0.252 Sum_probs=252.2
Q ss_pred CcccceEEECCCCc-EEEEE----------eCCc-eEEeecCcCcc---eeeeecCC-CeeEEEecCCCCEEEEEcCCCC
Q 005315 203 YWTESFVQWSPLGT-YLATV----------HRQG-AAVWGGANTFN---RLMRYAHP-QVKLIDFSPGEKYLVTYSSHEP 266 (702)
Q Consensus 203 ~~~v~~v~~Spdg~-~lat~----------~~~~-i~iw~~~~~~~---~~~~~~~~-~v~~i~fSpdg~~l~t~s~d~~ 266 (702)
...+.+++|||+|+ +||++ +.++ |+||+.. +.. .+..+.|. .|.+++|+|++++|++++.+
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN-- 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESS-SGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS--
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEcc-CCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC--
Confidence 35789999999998 99998 7777 8999998 553 44555555 59999999999999999999
Q ss_pred CCCcCCCccEEEEEEccC----CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC-CcEEEEec-CCeEEEEecCCc
Q 005315 267 SNPRDANRVVINIFDVRT----GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESF 340 (702)
Q Consensus 267 ~~~~~~~~~~i~vwd~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d-g~~la~~~-d~~i~v~d~~~~ 340 (702)
+.|++||+.+ .+.+..+.+|...+. +++|+| + +++|++++ |+.|++|++.++
T Consensus 89 --------g~v~vw~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 89 --------GSLELYSTNEANNAINSMARFSNHSSSVK-------------TVKFNA-KQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp --------SCEEEECCSSTTSCCCEEEECCCSSSCCC-------------EEEECS-SSTTBEEEECSSSCEEBCBTTTT
T ss_pred --------CeEEEeecccccccccchhhccCCccceE-------------EEEEcC-CCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999987 458888888877763 799999 8 88999998 999999999977
Q ss_pred c------ccc---ceeeccCCeeEEEeCCC-CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec------ccccce
Q 005315 341 T------LID---KKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF------SVSDCK 404 (702)
Q Consensus 341 ~------~~~---~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~ 404 (702)
. ... ....|...|.+++|+|+ +.+|++ ++.++. |.+|++.+.+.+...... ......
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-----~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS-----AGSSNF--ASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE-----ESSSSC--EEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred ccccccccccccccccCCCCCeeEEEeCCCCCcEEEE-----EcCCCC--EEEEECCCCCcceEEeccccccccCCceEE
Confidence 6 221 12346667999999999 678887 555555 556666666655544433 455667
Q ss_pred eEEccCC-CEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-CCCCceeEEEEee-CCcEEEEEEcCCCCCeEE
Q 005315 405 MYWQSSG-DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-NKNDKIIAFAWEP-KGHRFAVIHGDSPRPDIS 481 (702)
Q Consensus 405 ~~~s~~g-~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~ 481 (702)
+.|+|+| .+++++..++. ...+.+|+++....+. ..+. +|...|.+++|+| ++++|++++.|+ .|+
T Consensus 220 ~~~~~~~~~~l~~~~~d~~------~~~i~~~d~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg---~v~ 288 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDN------DPSILIWDLRNANTPL--QTLNQGHQKGILSLDWCHQDEHLLLSSGRDN---TVL 288 (416)
T ss_dssp EEECSSCTTEEEEEECCSS------SCCCCEEETTSTTSCS--BCCCSCCSSCEEEEEECSSCSSCEEEEESSS---EEE
T ss_pred EEECCCCCCEEEEEECCCC------CceEEEEeCCCCCCCc--EEeecCccCceeEEEeCCCCCCeEEEEeCCC---CEE
Confidence 8999998 57888877751 0127899987643332 2344 7899999999999 999999999999 999
Q ss_pred EEEeecccCcCceEEEEEcCC--CceeEEEEccCC-CEEEEEeccCCCceEEEEECCCcceeeec---------------
Q 005315 482 FYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMATA--------------- 543 (702)
Q Consensus 482 i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg-~~l~~~~~~~~dg~v~i~d~~~~~~~~~~--------------- 543 (702)
+||++++. .+..+.. ..+.+++|+|+| ++|++++. ||.|++|++.+.......
T Consensus 289 ~wd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 289 LWNPESAE------QLSQFPARGNWCFKTKFAPEAPDLFACASF---DNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp EECSSSCC------EEEEEECSSSCCCCEEECTTCTTEEEECCS---SSEEEEEESCCCCCSSCC---------------
T ss_pred EeeCCCCc------cceeecCCCCceEEEEECCCCCCEEEEEec---CCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 99997654 5555544 479999999999 89999988 999999999865432210
Q ss_pred ----------------------ccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 544 ----------------------EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 544 ----------------------~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
+...+++++|+|+|++|++++. |+.|+||++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-----d~~v~~w~~~~ 414 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD-----GKGVSITNPKI 414 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT-----SSCBCCBCCCC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC-----CCeEEEEEecc
Confidence 3456779999999999999998 99999999864
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.1e-33 Score=284.43 Aligned_cols=286 Identities=14% Similarity=0.200 Sum_probs=219.8
Q ss_pred ccccCCCcccceEEECCCC-cEEEEEeCCc-eEEeecCcC----cceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005315 197 PVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANT----FNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSN 268 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~----~~~~~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~ 268 (702)
..+.+|...|++++|+|++ ++|++++.|+ |++|+..+. ...+..+ .|. .|.+++|+|+|++|++++.|
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D---- 86 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD---- 86 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC----
Confidence 3578999999999999965 8999999999 889998621 1233344 344 59999999999999999999
Q ss_pred CcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccccee
Q 005315 269 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 347 (702)
Q Consensus 269 ~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~ 347 (702)
++|+|||+.+++.++.+.+|...+. ++.|+| ++.+|++++ |+.|++|++... .+....
T Consensus 87 ------~~v~~wd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~s~s~D~~i~vwd~~~~-~~~~~~ 145 (319)
T 3frx_A 87 ------KTLRLWDVATGETYQRFVGHKSDVM-------------SVDIDK-KASMIISGSRDKTIKVWTIKGQ-CLATLL 145 (319)
T ss_dssp ------SEEEEEETTTTEEEEEEECCSSCEE-------------EEEECT-TSCEEEEEETTSCEEEEETTSC-EEEEEC
T ss_pred ------CEEEEEECCCCCeeEEEccCCCcEE-------------EEEEcC-CCCEEEEEeCCCeEEEEECCCC-eEEEEe
Confidence 9999999999999999999988764 789999 999999999 999999998743 333444
Q ss_pred eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccc
Q 005315 348 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 348 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
.|...|.++.|+|.+.. .+++..+++++.++.
T Consensus 146 ~h~~~v~~~~~~~~~~~-------------------------------------------~~~~~~l~s~~~d~~----- 177 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKA-------------------------------------------DDDSVTIISAGNDKM----- 177 (319)
T ss_dssp CCSSCEEEEEECCC-------------------------------------------------CCEEEEEETTSC-----
T ss_pred ccCCcEEEEEEccCCCC-------------------------------------------CCCccEEEEEeCCCE-----
Confidence 56667888888875320 112223333333333
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCcee
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQAN 506 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~ 506 (702)
+.+|++.... ....+.+|...|.+++|+|+|++|++++.|+ .|++||+.++. .+..+. ...+.
T Consensus 178 ----i~~wd~~~~~---~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg---~i~iwd~~~~~------~~~~~~~~~~v~ 241 (319)
T 3frx_A 178 ----VKAWNLNQFQ---IEADFIGHNSNINTLTASPDGTLIASAGKDG---EIMLWNLAAKK------AMYTLSAQDEVF 241 (319)
T ss_dssp ----EEEEETTTTE---EEEEECCCCSCEEEEEECTTSSEEEEEETTC---EEEEEETTTTE------EEEEEECCSCEE
T ss_pred ----EEEEECCcch---hheeecCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCc------EEEEecCCCcEE
Confidence 3444433211 1134558899999999999999999999999 99999997654 444444 34799
Q ss_pred EEEEccCCCEEEEEeccCCCceEEEEECCCcceeee----------cccCceeeeEECCCCCEEEEEEeecccccccEEE
Q 005315 507 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT----------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNI 576 (702)
Q Consensus 507 ~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~----------~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~i 576 (702)
+++|+|+|.+|++++ ++.+++|+++....+.. .+...+.+++|+|||++|++++. |+.|+|
T Consensus 242 ~~~~sp~~~~la~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~-----Dg~i~v 312 (319)
T 3frx_A 242 SLAFSPNRYWLAAAT----ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT-----DNVIRV 312 (319)
T ss_dssp EEEECSSSSEEEEEE----TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET-----TSCEEE
T ss_pred EEEEcCCCCEEEEEc----CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec-----CceEEE
Confidence 999999999999887 46699999987655432 23456889999999999999999 999999
Q ss_pred EEec
Q 005315 577 WSFN 580 (702)
Q Consensus 577 w~~~ 580 (702)
|++.
T Consensus 313 Wd~~ 316 (319)
T 3frx_A 313 WQVM 316 (319)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9975
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.2e-33 Score=287.14 Aligned_cols=291 Identities=13% Similarity=0.180 Sum_probs=225.7
Q ss_pred cccccCCCcccceEEE-----CC-CCcEEEEEeCCc-eEEeecCcCc-------ceeeee-cC-CCeeEEEecCCCCEEE
Q 005315 196 EPVYKRSYWTESFVQW-----SP-LGTYLATVHRQG-AAVWGGANTF-------NRLMRY-AH-PQVKLIDFSPGEKYLV 259 (702)
Q Consensus 196 ~~~~~~~~~~v~~v~~-----Sp-dg~~lat~~~~~-i~iw~~~~~~-------~~~~~~-~~-~~v~~i~fSpdg~~l~ 259 (702)
...+.+|...|++++| +| +|++||+++.|+ |+||+.. .. .....+ .| ..|.+++|+|++.+|+
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~-~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY-EEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEEC-SSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECC-cCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 4467899999999999 77 999999999999 8899986 32 223333 34 3599999999999999
Q ss_pred EEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecC
Q 005315 260 TYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE 338 (702)
Q Consensus 260 t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~ 338 (702)
+++.| ++|+|||+.+++.+..+.+|...+. +++|+| ++++|++++ |+.|++|++.
T Consensus 93 s~s~D----------~~v~lwd~~~~~~~~~~~~h~~~v~-------------~v~~sp-~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 93 SSSWD----------KTLRLWDLRTGTTYKRFVGHQSEVY-------------SVAFSP-DNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEETT----------SEEEEEETTSSCEEEEEECCCSCEE-------------EEEECS-STTEEEEEETTSCEEEEESS
T ss_pred EEcCC----------CcEEEEECCCCcEEEEEcCCCCcEE-------------EEEECC-CCCEEEEEcCCCEEEEEecc
Confidence 99999 9999999999999999999987764 799999 999999998 9999999987
Q ss_pred Ccccccc--eeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEE
Q 005315 339 SFTLIDK--KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 416 (702)
Q Consensus 339 ~~~~~~~--~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 416 (702)
....... ...|...|.+++|+|++.... .++|.+.+|++
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------------------------~~~~~~~~l~s 189 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSAN---------------------------------------KVQPFAPYFAS 189 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCS---------------------------------------CCCSSCCEEEE
T ss_pred CCceeeeecccCCCceeeeeeecccccccc---------------------------------------ccCCCCCEEEE
Confidence 4322111 113555688899988753111 12455566777
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEE
Q 005315 417 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSK 496 (702)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~ 496 (702)
++.++. +.+|+.. . .....+.+|...|.+++|+|+|++|++++.|+ .|++||+..... .
T Consensus 190 ~~~d~~---------i~iwd~~--~--~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg---~v~iwd~~~~~~-----~ 248 (343)
T 2xzm_R 190 VGWDGR---------LKVWNTN--F--QIRYTFKAHESNVNHLSISPNGKYIATGGKDK---KLLIWDILNLTY-----P 248 (343)
T ss_dssp EETTSE---------EEEEETT--T--EEEEEEECCSSCEEEEEECTTSSEEEEEETTC---EEEEEESSCCSS-----C
T ss_pred EcCCCE---------EEEEcCC--C--ceeEEEcCccccceEEEECCCCCEEEEEcCCC---eEEEEECCCCcc-----c
Confidence 766655 6677621 1 12234668899999999999999999999999 999999943321 1
Q ss_pred EEEc-CCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee--e-------------cccCceeeeEECCCCCEE
Q 005315 497 LTTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--T-------------AEHFMATDVEWDPTGRYV 560 (702)
Q Consensus 497 ~~~~-~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~--~-------------~~~~~i~~~~~spdg~~l 560 (702)
...+ .++.+++++|+|++++++++. |+.|++|++.+.+... . .|...+++++|+|+|++|
T Consensus 249 ~~~~~~~~~v~~v~~sp~~~~la~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 249 QREFDAGSTINQIAFNPKLQWVAVGT----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp SEEEECSSCEEEEEECSSSCEEEEEE----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred ceeecCCCcEEEEEECCCCCEEEEEC----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 1222 356799999999999887664 7889999998654322 1 345678999999999999
Q ss_pred EEEEeecccccccEEEEEec
Q 005315 561 ATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 561 ~t~s~~~~~~d~~v~iw~~~ 580 (702)
++++. |+.|++|++.
T Consensus 325 ~sg~~-----Dg~v~~w~~~ 339 (343)
T 2xzm_R 325 FAGFT-----DGVIRTFSFE 339 (343)
T ss_dssp EEEET-----TSEEEEEEEE
T ss_pred EEecC-----CceEEEEEEE
Confidence 99999 9999999975
No 23
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-32 Score=287.59 Aligned_cols=289 Identities=14% Similarity=0.183 Sum_probs=225.8
Q ss_pred CCCcccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCC--------------------CeeEEEecCCCCEEEE
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP--------------------QVKLIDFSPGEKYLVT 260 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~--------------------~v~~i~fSpdg~~l~t 260 (702)
+|...|+|++|||||++||+++...++||+.. ++..+..+... .|.+++|||+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 68999999999999999999987679999998 77666555211 2889999999999999
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCC
Q 005315 261 YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES 339 (702)
Q Consensus 261 ~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~ 339 (702)
++.| +.|+|||+.+++.+..+.+|...+. +++|+| ++++|++++ |++|++||+.+
T Consensus 141 ~~~d----------~~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~p-~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 141 GAED----------RLIRIWDIENRKIVMILQGHEQDIY-------------SLDYFP-SGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp EETT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred EcCC----------CeEEEEECCCCcEEEEEccCCCCEE-------------EEEEcC-CCCEEEEecCCCcEEEEECCC
Confidence 9999 9999999999999999999987764 799999 999999998 99999999998
Q ss_pred cccccceeeccCCeeEEEeCC-CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEE
Q 005315 340 FTLIDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 418 (702)
Q Consensus 340 ~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 418 (702)
++..... .+...+..++|+| ++++|++ ++.++.+++| +..+...+....
T Consensus 197 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~-----~s~d~~v~iw--d~~~~~~~~~~~---------------------- 246 (393)
T 1erj_A 197 GQCSLTL-SIEDGVTTVAVSPGDGKYIAA-----GSLDRAVRVW--DSETGFLVERLD---------------------- 246 (393)
T ss_dssp TEEEEEE-ECSSCEEEEEECSTTCCEEEE-----EETTSCEEEE--ETTTCCEEEEEC----------------------
T ss_pred CeeEEEE-EcCCCcEEEEEECCCCCEEEE-----EcCCCcEEEE--ECCCCcEEEeec----------------------
Confidence 8765433 2345688999999 7888888 6677766654 333222111000
Q ss_pred cccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcC------
Q 005315 419 DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG------ 492 (702)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~------ 492 (702)
. ......+|...|.+++|+|+|++|++++.|+ .|++||++......
T Consensus 247 --------------------~-----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~---~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 247 --------------------S-----ENESGTGHKDSVYSVVFTRDGQSVVSGSLDR---SVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp -------------------------------CCCSSCEEEEEECTTSSEEEEEETTS---EEEEEEC-------------
T ss_pred --------------------c-----cccCCCCCCCCEEEEEECCCCCEEEEEeCCC---EEEEEECCCCCCcccccCCC
Confidence 0 0011236889999999999999999999999 99999997532110
Q ss_pred ceEEEEEcCC--CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECC------CCCEEEE
Q 005315 493 RVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP------TGRYVAT 562 (702)
Q Consensus 493 ~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~sp------dg~~l~t 562 (702)
.......+.+ ..+.+++|+|+|++|++++. ||.|++||+.+++.+.. .|...|.+++|++ ++.+|++
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~---D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSK---DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence 0112233333 36899999999999999998 99999999998887654 6778899999886 7889999
Q ss_pred EEeecccccccEEEEEec
Q 005315 563 AVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 563 ~s~~~~~~d~~v~iw~~~ 580 (702)
++. |+.++||++.
T Consensus 376 gs~-----Dg~i~iW~~~ 388 (393)
T 1erj_A 376 GSG-----DCKARIWKYK 388 (393)
T ss_dssp EET-----TSEEEEEEEE
T ss_pred ECC-----CCcEEECccc
Confidence 999 9999999986
No 24
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.9e-33 Score=323.30 Aligned_cols=356 Identities=13% Similarity=0.178 Sum_probs=275.8
Q ss_pred CCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCc
Q 005315 194 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPR 270 (702)
Q Consensus 194 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~ 270 (702)
+....+.+|...|++++|||+|++||+++.+| |.||+.. ++..+..+. |. .|.+++|||+|++|++++.+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------ 76 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYE-TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------ 76 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT------
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECC-CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC------
Confidence 44567789999999999999999999999998 8899998 777777664 44 49999999999999999999
Q ss_pred CCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCc-ccccceee
Q 005315 271 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF-TLIDKKSL 348 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~-~~~~~~~~ 348 (702)
+.|+|||+.+++.+..+.+|...+. +++|+| ++++|++++ ++.|.+|++.++ ........
T Consensus 77 ----g~i~vw~~~~~~~~~~~~~~~~~v~-------------~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 77 ----FRIRVFNYNTGEKVVDFEAHPDYIR-------------SIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp ----SEEEEEETTTCCEEEEEECCSSCEE-------------EEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred ----CeEEEEECCCCcEEEEEecCCCCEE-------------EEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 9999999999999999998887764 799999 999999998 999999999876 44444455
Q ss_pred ccCCeeEEEeCC-CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecc-cccceeEEcc--CCCEEEEEEcccccc
Q 005315 349 KVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-VSDCKMYWQS--SGDYLAVKVDRYTKT 424 (702)
Q Consensus 349 ~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~s~--~g~~l~~~~~~~~~~ 424 (702)
|...|.+++|+| ++..|++ ++.++. |.+|++............. .....+.|+| +|.+|++++.++.
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~-----~~~dg~--v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-- 209 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFAS-----GCLDRT--VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-- 209 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEE-----EETTSE--EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE--
T ss_pred CCCcEEEEEEEcCCCCEEEE-----EeCCCe--EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE--
Confidence 777899999999 7888888 556655 5556665544333332222 4555678898 9999999988876
Q ss_pred cccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--C
Q 005315 425 KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--G 502 (702)
Q Consensus 425 ~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~ 502 (702)
+.+|++.... ....+.+|...|.+++|+|+|++|++++.|+ .|++|++.++. .+..+. .
T Consensus 210 -------i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~v~vwd~~~~~------~~~~~~~~~ 270 (814)
T 3mkq_A 210 -------IKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIISGSEDG---TLKIWNSSTYK------VEKTLNVGL 270 (814)
T ss_dssp -------EEEEETTTTE---EEEEEECCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCS------EEEEECCSS
T ss_pred -------EEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCc------EEEEeecCC
Confidence 7888876532 2345667899999999999999999999999 99999997654 444444 4
Q ss_pred CceeEEEEccCCCE--EEEEeccCCCceEEEEECCCc----------ceeee----------------------------
Q 005315 503 KQANALFWSPSGRF--IVLAGLKGFNGQLEFYNVDEL----------ETMAT---------------------------- 542 (702)
Q Consensus 503 ~~v~~~~~spdg~~--l~~~~~~~~dg~v~i~d~~~~----------~~~~~---------------------------- 542 (702)
..+.+++|+|+|+. ++++. ++.+.+|++... +.+..
T Consensus 271 ~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (814)
T 3mkq_A 271 ERSWCIATHPTGRKNYIASGF----DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLS 346 (814)
T ss_dssp SSEEEEEECTTCGGGEEEEEE----TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBC
T ss_pred CcEEEEEEccCCCceEEEEEe----CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccce
Confidence 47999999999973 55444 677888886531 12111
Q ss_pred -------cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeeeccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 543 -------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 543 -------~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.+...+++++|+|+|++|++++. +.+.+|++..... .+.+.+.+++|+|+++.+++++.++.++
T Consensus 347 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~------~~~~i~~~~~~~~--~~~~~i~~~~~spdg~~la~~~~~g~v~ 417 (814)
T 3mkq_A 347 LQTKELGSVDVFPQSLAHSPNGRFVTVVGD------GEYVIYTALAWRN--KAFGKCQDFVWGPDSNSYALIDETGQIK 417 (814)
T ss_dssp CCCEEECCCSSCCSEEEECTTSSEEEEEET------TEEEEEETTTTEE--EEEEECSEEEECTTSSCEEEECTTCCEE
T ss_pred eeeecCCCCccCCceeEECCCCCEEEEecC------CEEEEEECccccc--cCCCceEEEEEeCCCCeEEEEeCCCcEE
Confidence 12235689999999999998864 8899999753322 2345677888888888888777665543
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=288.27 Aligned_cols=283 Identities=11% Similarity=0.105 Sum_probs=213.9
Q ss_pred CCCcccceEEECCCCcEEEEEeCCceEEeecCc-----------Ccceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCC
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQGAAVWGGAN-----------TFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSN 268 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~-----------~~~~~~~~~-~~~v~~i~fSpdg~~l~t~s~d~~~~ 268 (702)
.|...+.+++|||||++|++++...+++|+... .......+. ...|.+++|+|++ +|++++.+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d---- 102 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS---- 102 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT----
T ss_pred cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC----
Confidence 456679999999999999999866677887430 011111222 3459999999985 68899999
Q ss_pred CcCCCccEEEEEEccCCcEEeec----cCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccc
Q 005315 269 PRDANRVVINIFDVRTGKVMRDF----KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI 343 (702)
Q Consensus 269 ~~~~~~~~i~vwd~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~ 343 (702)
++|+|||+.+++.+..+ .+|...+. +++|+| +|++|++++ |++|++||+.+++.+
T Consensus 103 ------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~-------------~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 103 ------GAVELWELDENETLIVSKFCKYEHDDIVS-------------TVSVLS-SGTQAVSGSKDICIKVWDLAQQVVL 162 (344)
T ss_dssp ------SEEEEEEECTTSSCEEEEEEEECCSSCEE-------------EEEECT-TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ------CEEEEEeccCCCceeEeeccccCCCCCEE-------------EEEECC-CCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999999998765443 46776663 799999 999999999 999999999999988
Q ss_pred cceeeccCCeeEEEeCCCCC-eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccc
Q 005315 344 DKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 422 (702)
Q Consensus 344 ~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 422 (702)
.....|...|.+++|+|++. +|++ ++.|+.+++| ++.+.+....
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s-----~s~D~~v~iw--d~~~~~~~~~---------------------------- 207 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLS-----CSEDNRILLW--DTRCPKPASQ---------------------------- 207 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEE-----EETTSCEEEE--ETTSSSCEEE----------------------------
T ss_pred EEEcCcCCceEEEEecCCCCCceee-----eccccccccc--cccccceeee----------------------------
Confidence 87778888999999999985 5666 6667766654 4332221110
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC-CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC
Q 005315 423 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 501 (702)
Q Consensus 423 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 501 (702)
+....|...+.+++|+|+ +++|++++.|+ .|++||++++. .+.++.
T Consensus 208 ------------------------~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg---~v~~wd~~~~~------~~~~~~ 254 (344)
T 4gqb_B 208 ------------------------IGCSAPGYLPTSLAWHPQQSEVFVFGDENG---TVSLVDTKSTS------CVLSSA 254 (344)
T ss_dssp ------------------------CC----CCCEEEEEECSSCTTEEEEEETTS---EEEEEESCC--------CCEEEE
T ss_pred ------------------------eecceeeccceeeeecCCCCcceEEeccCC---cEEEEECCCCc------EEEEEc
Confidence 111133567889999995 56788888899 99999997654 344444
Q ss_pred C--CceeEEEEccCC-CEEEEEeccCCCceEEEEECCCcceeee-cccCceeeeEECCCCCE-EEEEEeecccccccEEE
Q 005315 502 G--KQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRY-VATAVTSVHEMENGFNI 576 (702)
Q Consensus 502 ~--~~v~~~~~spdg-~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~~i~~~~~spdg~~-l~t~s~~~~~~d~~v~i 576 (702)
+ ..|++++|+|+| ++|++++. |+.|+|||+.+++++.. .|...|++++|+|+|++ |++++. |+.|++
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~---D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~-----D~~v~~ 326 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSE---DCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGW-----DHQVVH 326 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEET---TSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEET-----TSCEEE
T ss_pred CCCCCEEEEEEccCCCeEEEEEeC---CCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcC-----CCeEEE
Confidence 4 479999999998 57888988 99999999998887764 66789999999999975 567888 999999
Q ss_pred EEecccee
Q 005315 577 WSFNGKLL 584 (702)
Q Consensus 577 w~~~g~~l 584 (702)
|++..+.+
T Consensus 327 w~v~~~~~ 334 (344)
T 4gqb_B 327 HVVPTEPL 334 (344)
T ss_dssp EECCC---
T ss_pred EECCCCCC
Confidence 99875443
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.8e-32 Score=277.75 Aligned_cols=286 Identities=16% Similarity=0.279 Sum_probs=229.7
Q ss_pred CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-C-CCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005315 195 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-H-PQVKLIDFSPGEKYLVTYSSHEPSNPRD 271 (702)
Q Consensus 195 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~-~~v~~i~fSpdg~~l~t~s~d~~~~~~~ 271 (702)
....+.+|...|++++|+|+|++||+++.++ ++||+.. +......+. | ..|.+++|+|++++|++++.+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------- 86 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDSNLLVSASDD------- 86 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-------
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCC-CcccchhhccCCCceEEEEEcCCCCEEEEECCC-------
Confidence 3445689999999999999999999999999 8899998 666655552 3 359999999999999999999
Q ss_pred CCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeecc
Q 005315 272 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 350 (702)
Q Consensus 272 ~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~ 350 (702)
+.|++||+.+++.+..+.+|...+. ++.|+| ++++|++++ |+.|++||+.+++.+.....|.
T Consensus 87 ---~~i~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 149 (312)
T 4ery_A 87 ---KTLKIWDVSSGKCLKTLKGHSNYVF-------------CCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149 (312)
T ss_dssp ---SEEEEEETTTCCEEEEEECCSSCEE-------------EEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred ---CEEEEEECCCCcEEEEEcCCCCCEE-------------EEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCC
Confidence 9999999999999999998887663 789999 999999999 9999999999888776666677
Q ss_pred CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 351 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 351 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
..|.+++|+|++++|++ ++.++.+++ |++.+.+.+.
T Consensus 150 ~~v~~~~~~~~~~~l~~-----~~~d~~i~~--wd~~~~~~~~------------------------------------- 185 (312)
T 4ery_A 150 DPVSAVHFNRDGSLIVS-----SSYDGLCRI--WDTASGQCLK------------------------------------- 185 (312)
T ss_dssp SCEEEEEECTTSSEEEE-----EETTSCEEE--EETTTCCEEE-------------------------------------
T ss_pred CcEEEEEEcCCCCEEEE-----EeCCCcEEE--EECCCCceee-------------------------------------
Confidence 78999999999999888 556665554 3332221110
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCc-----e
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-----A 505 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-----v 505 (702)
.....+...+..++|+|++++|++++.|+ .|++||+.++. .+..+.++. +
T Consensus 186 ----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~------~~~~~~~~~~~~~~~ 240 (312)
T 4ery_A 186 ----------------TLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDYSKGK------CLKTYTGHKNEKYCI 240 (312)
T ss_dssp ----------------EECCSSCCCEEEEEECTTSSEEEEEETTT---EEEEEETTTTE------EEEEECSSCCSSSCC
T ss_pred ----------------EEeccCCCceEEEEECCCCCEEEEEcCCC---eEEEEECCCCc------EEEEEEecCCceEEE
Confidence 00113466788999999999999999999 99999997644 455554431 2
Q ss_pred eEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 506 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
......+++++|++++. ||.|++||+.+++.+.. .|...|.+++|+|++++|++++. ..|+.|++|+.+
T Consensus 241 ~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---~~d~~i~~W~~d 311 (312)
T 4ery_A 241 FANFSVTGGKWIVSGSE---DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL---ENDKTIKLWKSD 311 (312)
T ss_dssp CEEEECSSSCEEEECCT---TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEEC---TTTCCEEEEECC
T ss_pred EEEEEeCCCcEEEEECC---CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEc---cCCccEEEecCC
Confidence 23334467899999988 99999999998887765 56788999999999999999983 118999999864
No 27
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.8e-32 Score=303.66 Aligned_cols=359 Identities=12% Similarity=0.170 Sum_probs=266.4
Q ss_pred cccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCc---ccceEEECCC-CcEEEEEeCCc-eEEeecCcCc
Q 005315 161 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYW---TESFVQWSPL-GTYLATVHRQG-AAVWGGANTF 235 (702)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~~ 235 (702)
.+....+.|+++..++..+.++...+|+. ...+....+.+|.. .+++++|+|+ |++|++++.++ |++|+.. ++
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~ 239 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQG-PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-SG 239 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEET-TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-TC
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeC-CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC-CC
Confidence 35566677888778888888999999998 56777778889998 9999999999 99999999998 8899999 78
Q ss_pred ceeeee-----cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCc
Q 005315 236 NRLMRY-----AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGV 309 (702)
Q Consensus 236 ~~~~~~-----~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 309 (702)
+.+..+ .|. .|.+++|+ ++++|++++.+ +.|++||+.+++.+..+..+..... ..
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----------~~i~~wd~~~~~~~~~~~~~~~~~~--------~~ 300 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----------ATIRVWDVTTSKCVQKWTLDKQQLG--------NQ 300 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----------SEEEEEETTTTEEEEEEECCTTCGG--------GC
T ss_pred CEeEEecccccccCCceEEEEEc-CCCEEEEEcCC----------CcEEEEECCCCcEEEEEcCCCCccc--------Cc
Confidence 877777 455 49999999 99999999999 9999999999999998887732210 00
Q ss_pred ccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCC---------------------------
Q 005315 310 SWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPT--------------------------- 361 (702)
Q Consensus 310 ~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~--------------------------- 361 (702)
...+.| + ++.++++++ ++.|.+|++.++..+.....|...|.+++| |+
T Consensus 301 -~~~~~~-~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~ 376 (615)
T 1pgu_A 301 -QVGVVA-T-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIV 376 (615)
T ss_dssp -EEEEEE-E-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEE
T ss_pred -eeEEEe-C-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceE
Confidence 014556 4 677888887 999999999987766555555556666666 54
Q ss_pred ------CCeEEEEeecCCCCCCCcEEEEEecC--------------------------------Ccceeeeeeecccccc
Q 005315 362 ------DPIISLFVPELGGGNQPARVSLVQIP--------------------------------SKEELRQKNLFSVSDC 403 (702)
Q Consensus 362 ------~~~la~~~~~~~~~~~~~~i~~~~~~--------------------------------~~~~~~~~~~~~~~~~ 403 (702)
+..|++ ++.++.+++|..... ..+.+.... ......
T Consensus 377 ~~~~~~~~~l~~-----~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 450 (615)
T 1pgu_A 377 SLDNSKAQEYSS-----ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGS 450 (615)
T ss_dssp EEECCSTTCCEE-----EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred EEEECCCcEEEE-----EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCce
Confidence 333333 333333333322210 111111111 112222
Q ss_pred eeEEccCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEE
Q 005315 404 KMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 482 (702)
Q Consensus 404 ~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 482 (702)
.+.|+ +++|+++.. ++. +.+|++...... ...+.+|...|.+++|+|+|++|++++.|+ .|++
T Consensus 451 ~~~~~--~~~l~~~~~~d~~---------i~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i~i 514 (615)
T 1pgu_A 451 AVSLS--QNYVAVGLEEGNT---------IQVFKLSDLEVS--FDLKTPLRAKPSYISISPSETYIAAGDVMG---KILL 514 (615)
T ss_dssp EEEEC--SSEEEEEETTTSC---------EEEEETTEEEEE--EECSSCCSSCEEEEEECTTSSEEEEEETTS---CEEE
T ss_pred EEEEc--CCEEEEeecCCCe---------EEEEECCCcccc--ccccCCccCceEEEEECCCCCEEEEcCCCC---eEEE
Confidence 33444 566666665 544 778877643211 144668899999999999999999999999 9999
Q ss_pred EEeecccCcCceEEEEEcCC---CceeEEEEcc----------CCCEEEEEeccCCCceEEEEECCCc-ceeee--cccC
Q 005315 483 YSMRTAQHAGRVSKLTTLKG---KQANALFWSP----------SGRFIVLAGLKGFNGQLEFYNVDEL-ETMAT--AEHF 546 (702)
Q Consensus 483 ~d~~~~~~~~~~~~~~~~~~---~~v~~~~~sp----------dg~~l~~~~~~~~dg~v~i~d~~~~-~~~~~--~~~~ 546 (702)
|++.++. .+..+.+ ..+++++|+| +|++|++++. ||.|++||+.++ +.+.. .|..
T Consensus 515 w~~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~h~~ 585 (615)
T 1pgu_A 515 YDLQSRE------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL---DTNIFIYSVKRPMKIIKALNAHKD 585 (615)
T ss_dssp EETTTTE------EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET---TSCEEEEESSCTTCCEEETTSSTT
T ss_pred eeCCCCc------ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC---CCcEEEEECCCCceechhhhcCcc
Confidence 9997654 5555543 4799999999 9999999998 999999999986 55544 5678
Q ss_pred ceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 547 MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 547 ~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
.|++++|+|+|+ |++++. |+.|++|++..
T Consensus 586 ~v~~l~~s~~~~-l~s~~~-----d~~v~iw~~~~ 614 (615)
T 1pgu_A 586 GVNNLLWETPST-LVSSGA-----DACIKRWNVVL 614 (615)
T ss_dssp CEEEEEEEETTE-EEEEET-----TSCEEEEEEC-
T ss_pred ceEEEEEcCCCC-eEEecC-----CceEEEEeeec
Confidence 999999999999 999999 99999999863
No 28
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.1e-32 Score=316.59 Aligned_cols=388 Identities=11% Similarity=0.122 Sum_probs=295.1
Q ss_pred ccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeee
Q 005315 162 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR 240 (702)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~ 240 (702)
+....++|+++ .+++.+.++.+.+|+. ..+.....+.+|...|++++|||+|++||+++.++ |.||+.. ++..+..
T Consensus 16 v~~i~~sp~~~-~la~~~~~g~v~iwd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~-~~~~~~~ 92 (814)
T 3mkq_A 16 VKGIDFHPTEP-WVLTTLYSGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TGEKVVD 92 (814)
T ss_dssp EEEEEECSSSS-EEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-TCCEEEE
T ss_pred eEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEE
Confidence 45556677665 5566677888889998 46777788899999999999999999999999999 8899999 7777776
Q ss_pred ec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-cEEeeccCCCcccccCCCCCCCCcccceEEEc
Q 005315 241 YA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 317 (702)
Q Consensus 241 ~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s 317 (702)
+. |. .|.+++|+|++++|++++.+ +.|++||+.++ .....+.+|...+. +++|+
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~vw~~~~~~~~~~~~~~~~~~v~-------------~~~~~ 149 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDD----------LTVKLWNWENNWALEQTFEGHEHFVM-------------CVAFN 149 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETT----------SEEEEEEGGGTSEEEEEEECCSSCEE-------------EEEEE
T ss_pred EecCCCCEEEEEEeCCCCEEEEEcCC----------CEEEEEECCCCceEEEEEcCCCCcEE-------------EEEEE
Confidence 64 44 49999999999999999999 99999999887 66777888776653 78999
Q ss_pred CCCCcEEEEec-CCeEEEEecCCcccccceeecc-CCeeEEEeCC--CCCeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 318 GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-ENVMDFSWSP--TDPIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 318 ~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~sp--~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
|.++.+|++++ ++.|.+|++.++........+. ..+..++|+| ++.+|++ ++.++ .|.+|+..+.+.+.
T Consensus 150 p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg--~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT-----ASDDL--TIKIWDYQTKSCVA 222 (814)
T ss_dssp TTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE-----ECTTS--EEEEEETTTTEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE-----EeCCC--EEEEEECCCCcEEE
Confidence 83456888888 9999999998776655544443 6799999999 8999998 55555 56667777776666
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEE-EEEE
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF-AVIH 472 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l-~~~~ 472 (702)
....+......+.|+|+|.+|++++.++. +.+|++.... ....+..|...+.+++|+|+|..+ ++++
T Consensus 223 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---------v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 290 (814)
T 3mkq_A 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGT---------LKIWNSSTYK---VEKTLNVGLERSWCIATHPTGRKNYIASG 290 (814)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSC---------EEEEETTTCS---EEEEECCSSSSEEEEEECTTCGGGEEEEE
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCe---------EEEEECCCCc---EEEEeecCCCcEEEEEEccCCCceEEEEE
Confidence 55555556667899999999999998877 7899876532 224456778899999999999742 3334
Q ss_pred cCCCCCeEEEEEeecccCcC----ceEEEE---------------------------------EcC--CCceeEEEEccC
Q 005315 473 GDSPRPDISFYSMRTAQHAG----RVSKLT---------------------------------TLK--GKQANALFWSPS 513 (702)
Q Consensus 473 ~d~~~~~v~i~d~~~~~~~~----~~~~~~---------------------------------~~~--~~~v~~~~~spd 513 (702)
.++ .+.+|++....... ....+. .+. ...+.+++|+|+
T Consensus 291 ~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 367 (814)
T 3mkq_A 291 FDN---GFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPN 367 (814)
T ss_dssp ETT---EEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTT
T ss_pred eCC---CEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCC
Confidence 455 67888764321100 000111 011 124688999999
Q ss_pred CCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeeeccccEe
Q 005315 514 GRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFF 593 (702)
Q Consensus 514 g~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~~~~i~ 593 (702)
|+++++++ +|.+.+|++...... +.+.+++++|+|+|++|++++. ++.+++|+. ...+...+.
T Consensus 368 g~~la~~~----~~~~~i~~~~~~~~~---~~~~i~~~~~spdg~~la~~~~-----~g~v~l~~~-----~~~~~~~v~ 430 (814)
T 3mkq_A 368 GRFVTVVG----DGEYVIYTALAWRNK---AFGKCQDFVWGPDSNSYALIDE-----TGQIKYYKN-----FKEVTSWSV 430 (814)
T ss_dssp SSEEEEEE----TTEEEEEETTTTEEE---EEEECSEEEECTTSSCEEEECT-----TCCEEEEET-----TEECTTCCC
T ss_pred CCEEEEec----CCEEEEEECcccccc---CCCceEEEEEeCCCCeEEEEeC-----CCcEEEEEC-----CCCccceEE
Confidence 99999987 799999998744332 2457889999999999999998 899999962 233456778
Q ss_pred eEEEeeCC---CCCCChhhHHHHH
Q 005315 594 QFLWRPRP---PSFLTPEKEEEIA 614 (702)
Q Consensus 594 ~~~w~p~~---~~l~s~~~d~~i~ 614 (702)
.+.|+|++ ..|++++.++.|+
T Consensus 431 ~~~~s~dg~~~~~l~~~~~d~~v~ 454 (814)
T 3mkq_A 431 PMHSAIDRLFSGALLGVKSDGFVY 454 (814)
T ss_dssp CCSSCCCEEECSSSEEEEETTEEE
T ss_pred cCCcCccceecceEEEEecCCEEE
Confidence 88999998 6888877776554
No 29
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-32 Score=277.33 Aligned_cols=290 Identities=16% Similarity=0.199 Sum_probs=215.6
Q ss_pred CCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcC-cceeeee--c-CC-CeeEEEecCCCCEEEEEcCCCCC
Q 005315 194 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANT-FNRLMRY--A-HP-QVKLIDFSPGEKYLVTYSSHEPS 267 (702)
Q Consensus 194 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~-~~~~~~~--~-~~-~v~~i~fSpdg~~l~t~s~d~~~ 267 (702)
+....+.+|...|++++|+|+ +||+++.|+ |+||++... ...+..+ . |. .|.+++|+|++++|++++.|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D--- 79 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD--- 79 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT---
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC---
Confidence 345567899999999999998 999999999 889999822 2333333 2 44 49999999999999999999
Q ss_pred CCcCCCccEEEEEEccC-------CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCC
Q 005315 268 NPRDANRVVINIFDVRT-------GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES 339 (702)
Q Consensus 268 ~~~~~~~~~i~vwd~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~ 339 (702)
++|+|||+.. .+.+..+.+|...+. +++|+| ++++|++++ |+.|++|++..
T Consensus 80 -------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~-------------~v~~sp-~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 80 -------STVSIWAKEESADRTFEMDLLAIIEGHENEVK-------------GVAWSN-DGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp -------SCEEEEEC-------CCCEEEEEEC----CEE-------------EEEECT-TSCEEEEEETTSCEEEEECCT
T ss_pred -------CcEEEEEcccCcCccccceeEEEEcCCCCcEE-------------EEEECC-CCCEEEEEeCCCEEEEEeccC
Confidence 9999999843 356777888877764 799999 999999999 99999999953
Q ss_pred c----ccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEE
Q 005315 340 F----TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLA 415 (702)
Q Consensus 340 ~----~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 415 (702)
. ..+.....|...|.+++|+|++.+|++ ++.|+.+++|......
T Consensus 139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s-----~s~D~~i~iW~~~~~~--------------------------- 186 (330)
T 2hes_X 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLAS-----SSYDDTVRIWKDYDDD--------------------------- 186 (330)
T ss_dssp TCCCCEEEEEECCCSSCEEEEEECSSSSEEEE-----EETTSCEEEEEEETTE---------------------------
T ss_pred CCCCeEEEEEeccCCCceEEEEECCCCCEEEE-----EcCCCeEEEEECCCCC---------------------------
Confidence 2 233334456677999999999998888 7777777766432100
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC--CcEEEEEEcCCCCCeEEEEEeecccCc--
Q 005315 416 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--GHRFAVIHGDSPRPDISFYSMRTAQHA-- 491 (702)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--g~~l~~~~~d~~~~~v~i~d~~~~~~~-- 491 (702)
......+.+|...|.+++|+|+ +.+|++++.|+ .|++|++..+...
T Consensus 187 ---------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~---~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 187 ---------------------------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS---TVRVWKYMGDDEDDQ 236 (330)
T ss_dssp ---------------------------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS---CEEEEEEEEECTTSC
T ss_pred ---------------------------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC---eEEEEEecCCCcccc
Confidence 0011235578999999999998 77899999999 9999999764221
Q ss_pred CceEEEEEcC---CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcc--eee---ecccC-ceeeeEECC--CCCEE
Q 005315 492 GRVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE--TMA---TAEHF-MATDVEWDP--TGRYV 560 (702)
Q Consensus 492 ~~~~~~~~~~---~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~--~~~---~~~~~-~i~~~~~sp--dg~~l 560 (702)
........+. ...|.+++|+|++ +|++++. ||.|++|+..+++ .+. ..|.. .|++++|+| +|++|
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA---DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTIL 312 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET---TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCE
T ss_pred ceeEEeeecccccccceEEEEEcCCC-EEEEEeC---CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEE
Confidence 1112344443 3479999999776 7888887 9999999998663 232 23444 799999999 79999
Q ss_pred EEEEeecccccccEEEEEec
Q 005315 561 ATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 561 ~t~s~~~~~~d~~v~iw~~~ 580 (702)
++++. |+.|+||++.
T Consensus 313 as~s~-----Dg~v~~W~~~ 327 (330)
T 2hes_X 313 ATGGD-----DGIVNFWSLE 327 (330)
T ss_dssp EEEET-----TSEEEEEEC-
T ss_pred EEecC-----CCcEEEEEec
Confidence 99999 9999999975
No 30
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.2e-32 Score=286.21 Aligned_cols=295 Identities=14% Similarity=0.212 Sum_probs=238.2
Q ss_pred cccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceee
Q 005315 161 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 239 (702)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 239 (702)
.+.+..++|.+. .++..+.++.+.+|+. ..++....+.+|...|++++|+|+|++||+++.|+ |+|||.. +...+.
T Consensus 110 ~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~-~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~~~~ 186 (410)
T 1vyh_C 110 PVTRVIFHPVFS-VMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFECIR 186 (410)
T ss_dssp CEEEEEECSSSS-EEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSCEEE
T ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEEC-CCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeE
Confidence 355666777665 5666777889999998 56778888999999999999999999999999999 8899999 777777
Q ss_pred eec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEc
Q 005315 240 RYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 317 (702)
Q Consensus 240 ~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s 317 (702)
.+. |. .|.+++|+|+|++|++++.| ++|++||+.++.++..+.+|...+. ++.|+
T Consensus 187 ~~~~h~~~V~~v~~~p~~~~l~s~s~D----------~~i~~wd~~~~~~~~~~~~h~~~v~-------------~~~~~ 243 (410)
T 1vyh_C 187 TMHGHDHNVSSVSIMPNGDHIVSASRD----------KTIKMWEVQTGYCVKTFTGHREWVR-------------MVRPN 243 (410)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEETT----------SEEEEEETTTCCEEEEEECCSSCEE-------------EEEEC
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCC----------CeEEEEECCCCcEEEEEeCCCccEE-------------EEEEC
Confidence 663 44 59999999999999999999 9999999999999999999887663 78999
Q ss_pred CCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeee
Q 005315 318 GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 396 (702)
Q Consensus 318 ~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 396 (702)
| ++.+|++++ |+.|++|++.++........|...|.+++|+|++.+... ....+..
T Consensus 244 ~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-----~~~~~~~----------------- 300 (410)
T 1vyh_C 244 Q-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI-----SEATGSE----------------- 300 (410)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGG-----GGCCSCC-----------------
T ss_pred C-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccch-----hhhcccc-----------------
Confidence 9 999999999 999999999988877666677788999999998765432 0000000
Q ss_pred ecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC
Q 005315 397 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 476 (702)
Q Consensus 397 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 476 (702)
.......|.+|++++.++. +.+|++.... ....+.+|...|.+++|+|+|++|++++.|+
T Consensus 301 -------~~~~~~~g~~l~sgs~D~~---------i~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~- 360 (410)
T 1vyh_C 301 -------TKKSGKPGPFLLSGSRDKT---------IKMWDVSTGM---CLMTLVGHDNWVRGVLFHSGGKFILSCADDK- 360 (410)
T ss_dssp --------------CCEEEEEETTSE---------EEEEETTTTE---EEEEEECCSSCEEEEEECSSSSCEEEEETTT-
T ss_pred -------ccccCCCCCEEEEEeCCCe---------EEEEECCCCc---eEEEEECCCCcEEEEEEcCCCCEEEEEeCCC-
Confidence 0012446789999998877 7899886432 2345668999999999999999999999999
Q ss_pred CCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 477 RPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 477 ~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
.|++||+.++. .+..+. ...|++++|+|++.+|++++. ||.|++|+++
T Consensus 361 --~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~---D~~i~vW~~r 410 (410)
T 1vyh_C 361 --TLRVWDYKNKR------CMKTLNAHEHFVTSLDFHKTAPYVVTGSV---DQTVKVWECR 410 (410)
T ss_dssp --EEEEECCTTSC------CCEEEECCSSCEEEEEECSSSSCEEEEET---TSEEEEEC--
T ss_pred --eEEEEECCCCc------eEEEEcCCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEeCC
Confidence 99999996554 333443 447999999999999999998 9999999863
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-31 Score=285.59 Aligned_cols=320 Identities=8% Similarity=0.054 Sum_probs=251.4
Q ss_pred cccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005315 204 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 281 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd 281 (702)
..+++++|||+|++|++++.++ +++|+.. +......+.... +....|+|++++|++++.+ +.|+|||
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd 125 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTI-IRDGSKMLKRADYTAVDTAKLQMRRFILGTTE----------GDIKVLD 125 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECC-SEETTTTSCSCCEEEEEEECSSSCEEEEEETT----------SCEEEEC
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEec-ccceeeEEecCCceEEEEEecCCCEEEEEECC----------CCEEEEe
Confidence 4467899999999999999998 8899998 666655554445 5556889999999999999 9999999
Q ss_pred ccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCC
Q 005315 282 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSP 360 (702)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp 360 (702)
+.+++.+..+.+|...+. +++|+| ++++|++++ |+.|++|++.+++.+.....|...|.+++|+|
T Consensus 126 ~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 126 SNFNLQREIDQAHVSEIT-------------KLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEEETTSSSSCEE-------------EEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCcceeeecccccCccE-------------EEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 999999998888887764 899999 999999999 99999999999888877777888999999999
Q ss_pred CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec------------------------ccccceeEEccCCCEEEE
Q 005315 361 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF------------------------SVSDCKMYWQSSGDYLAV 416 (702)
Q Consensus 361 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~s~~g~~l~~ 416 (702)
++++|++ ++.++.+++ |++.+.+.+...... ......+.|+|+|++|++
T Consensus 192 ~~~~l~s-----~~~d~~v~i--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 192 RGRNVLS-----ASLDGTIRL--WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp TTTEEEE-----EETTSCEEE--EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred CCCEEEE-----EcCCCcEEE--eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence 9999998 667776555 455554433322211 123344678999999999
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCc-EEEEEEcCCCCCeEEEEEeecccCcCceE
Q 005315 417 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVS 495 (702)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 495 (702)
+..++. +.+|++....... .....|...|.+++|+|++. +|++++.|+ .|++||++++... ..
T Consensus 265 ~~~dg~---------i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~--~~ 328 (420)
T 3vl1_A 265 GHVSGV---------ITVHNVFSKEQTI--QLPSKFTCSCNSLTVDGNNANYIYAGYENG---MLAQWDLRSPECP--VG 328 (420)
T ss_dssp EETTSC---------EEEEETTTCCEEE--EECCTTSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCTTSC--SE
T ss_pred EcCCCe---------EEEEECCCCceeE--EcccccCCCceeEEEeCCCCCEEEEEeCCC---eEEEEEcCCCcCc--hh
Confidence 998877 8899987543221 22336789999999999999 999999999 9999999765421 12
Q ss_pred EEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcc-----------eeeecccCceeeeEECCCCC---EEE
Q 005315 496 KLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE-----------TMATAEHFMATDVEWDPTGR---YVA 561 (702)
Q Consensus 496 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~-----------~~~~~~~~~i~~~~~spdg~---~l~ 561 (702)
.+.......++++. +|+|++|++++. ||.|++|++.... .....+...+.+++|+|+|+ .|+
T Consensus 329 ~~~~~~~~~v~~~~-~~~~~~l~s~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~ 404 (420)
T 3vl1_A 329 EFLINEGTPINNVY-FAAGALFVSSGF---DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL 404 (420)
T ss_dssp EEEESTTSCEEEEE-EETTEEEEEETT---TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEE
T ss_pred hhhccCCCCceEEE-eCCCCEEEEecC---CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEE
Confidence 23322445677774 567889999988 9999999987521 12235667899999999999 777
Q ss_pred EEEeecccccccEEEEEec
Q 005315 562 TAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 562 t~s~~~~~~d~~v~iw~~~ 580 (702)
+++. ++.+.+|++.
T Consensus 405 a~g~-----~g~~~~~~~~ 418 (420)
T 3vl1_A 405 EVGK-----NNFCALYNLS 418 (420)
T ss_dssp EEET-----TTEEEEEESC
T ss_pred EEcC-----CceEEEEecc
Confidence 7777 7999999975
No 32
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-30 Score=272.41 Aligned_cols=295 Identities=18% Similarity=0.218 Sum_probs=226.7
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~ 273 (702)
..+.+|...|++++|||+|++||+++.++ |.||+.. +.+.+..+. |. .|.+++|+|++++|++++.+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--------- 95 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL-NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD--------- 95 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT---------
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC---------
Confidence 45789999999999999999999999998 8899999 777777774 44 49999999999999999999
Q ss_pred ccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C-----CeEEEEecCCccccccee
Q 005315 274 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K-----NMISVYETESFTLIDKKS 347 (702)
Q Consensus 274 ~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d-----~~i~v~d~~~~~~~~~~~ 347 (702)
+.|++||+.+++.+..+.. ...+. ++.|+| ++++|++++ + +.|.+|++..........
T Consensus 96 -g~i~iwd~~~~~~~~~~~~-~~~v~-------------~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 96 -YSIKLWDVSNGQCVATWKS-PVPVK-------------RVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp -TEEEEEETTTCCEEEEEEC-SSCEE-------------EEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred -CeEEEEECCCCcEEEEeec-CCCeE-------------EEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 9999999999999988873 33332 799999 999999988 6 899999988665432211
Q ss_pred eccC-CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccc
Q 005315 348 LKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 426 (702)
Q Consensus 348 ~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 426 (702)
.... .+..+... . .......+.|+|+|++|+++..++.
T Consensus 160 ~~~~~~~~~~~~~----------------~---------------------~~~~~~~~~~~~~~~~l~~~~~dg~---- 198 (369)
T 3zwl_B 160 KVSEEPIHKIITH----------------E---------------------GLDAATVAGWSTKGKYIIAGHKDGK---- 198 (369)
T ss_dssp EECSSCSEEEECC----------------T---------------------TCCCEEEEEECGGGCEEEEEETTSE----
T ss_pred ccccceeeeccCC----------------c---------------------CccceeEEEEcCCCCEEEEEcCCCE----
Confidence 1000 00000000 0 0001222456666666666666554
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCce
Q 005315 427 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQA 505 (702)
Q Consensus 427 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v 505 (702)
+.+|++...... ...+..|...|.+++|+|++++|++++.++ .|++||++++. .+..+. ...+
T Consensus 199 -----i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~------~~~~~~~~~~~ 262 (369)
T 3zwl_B 199 -----ISKYDVSNNYEY--VDSIDLHEKSISDMQFSPDLTYFITSSRDT---NSFLVDVSTLQ------VLKKYETDCPL 262 (369)
T ss_dssp -----EEEEETTTTTEE--EEEEECCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCC------EEEEEECSSCE
T ss_pred -----EEEEECCCCcEe--EEEEecCCCceeEEEECCCCCEEEEecCCc---eEEEEECCCCc------eeeeecCCCCc
Confidence 566666543222 234556889999999999999999999999 99999997654 344433 4579
Q ss_pred eEEEEccCCCEEEEEeccCCCc--------------eEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeeccc
Q 005315 506 NALFWSPSGRFIVLAGLKGFNG--------------QLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHE 569 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~~~~dg--------------~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~ 569 (702)
..++|+|+|+++++++. ++ .+++||+.+++.+.. .|...|++++|+|+|++|++++.
T Consensus 263 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---- 335 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGG---QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE---- 335 (369)
T ss_dssp EEEEECSSSSEEEEEEC---CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET----
T ss_pred eeEEecCCCceEEEeec---CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC----
Confidence 99999999999999986 55 899999998877664 56789999999999999999999
Q ss_pred ccccEEEEEeccc
Q 005315 570 MENGFNIWSFNGK 582 (702)
Q Consensus 570 ~d~~v~iw~~~g~ 582 (702)
|+.|+||++...
T Consensus 336 -dg~v~iw~~~~~ 347 (369)
T 3zwl_B 336 -DGFIRLHHFEKS 347 (369)
T ss_dssp -TSEEEEEEECHH
T ss_pred -CCeEEEEECccc
Confidence 999999999743
No 33
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-31 Score=270.92 Aligned_cols=271 Identities=13% Similarity=0.163 Sum_probs=220.7
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
|...|.+++|||+|++|++++.| ++|+|||+.++..++.+..|...+. +++|+| ++
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~d----------g~v~lWd~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~ 67 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYS----------GRVELWNYETQVEVRSIQVTETPVR-------------AGKFIA-RK 67 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETT----------SEEEEEETTTTEEEEEEECCSSCEE-------------EEEEEG-GG
T ss_pred CCCceEEEEECCCCCEEEEEcCC----------CcEEEEECCCCceeEEeeccCCcEE-------------EEEEeC-CC
Confidence 44569999999999999999999 9999999999999999998877663 789999 99
Q ss_pred cEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc
Q 005315 322 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 400 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 400 (702)
++|++++ |+.|++||+.+++.+.....|...|.+++|+|++++|++ ++.|+.+++|.+.. ..
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-----gs~D~~v~lWd~~~--~~---------- 130 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-----GSDDLTVKLWNWEN--NW---------- 130 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE-----EETTSCEEEEEGGG--TT----------
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEE-----ECCCCeEEEEECCC--Cc----------
Confidence 9999999 999999999999888777778888999999999999998 77787777654321 00
Q ss_pred ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCCCCCe
Q 005315 401 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPD 479 (702)
Q Consensus 401 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~ 479 (702)
. ....+.+|...|.+++|+| ++.+|++++.|+ .
T Consensus 131 ------------~-------------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~---~ 164 (304)
T 2ynn_A 131 ------------A-------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR---T 164 (304)
T ss_dssp ------------E-------------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTS---E
T ss_pred ------------c-------------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCC---e
Confidence 0 0122457899999999999 678999999999 9
Q ss_pred EEEEEeecccCcCceEEEEEcCCCceeEEEEcc--CCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECC
Q 005315 480 ISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP--SGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP 555 (702)
Q Consensus 480 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~sp 555 (702)
|++||+...... ..+.......+..+.|+| ++++|++++. |+.|++||+.+++.+.+ .|...|++++|+|
T Consensus 165 v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 165 VKVWSLGQSTPN---FTLTTGQERGVNYVDYYPLPDKPYMITASD---DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp EEEEETTCSSCS---EEEECCCTTCEEEEEECCSTTCCEEEEEET---TSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred EEEEECCCCCcc---ceeccCCcCcEEEEEEEEcCCCCEEEEEcC---CCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence 999999654321 122222234688899987 7889999998 99999999998887765 6778999999999
Q ss_pred CCCEEEEEEeecccccccEEEEEecc-ceeeee--ccccEeeEEEeeCCC--CCCChhhH
Q 005315 556 TGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT--LKDHFFQFLWRPRPP--SFLTPEKE 610 (702)
Q Consensus 556 dg~~l~t~s~~~~~~d~~v~iw~~~g-~~l~~~--~~~~i~~~~w~p~~~--~l~s~~~d 610 (702)
++++|++++. |+.|+|||... +.+... +...+++++|+|++. +++++..+
T Consensus 239 ~~~~l~s~s~-----Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~ 293 (304)
T 2ynn_A 239 TLPIIISGSE-----DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293 (304)
T ss_dssp SSSEEEEEET-----TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT
T ss_pred CCCEEEEEcC-----CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC
Confidence 9999999999 99999999874 444443 457899999999986 45666544
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.2e-31 Score=270.46 Aligned_cols=312 Identities=14% Similarity=0.146 Sum_probs=242.2
Q ss_pred ccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCccee--
Q 005315 162 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL-- 238 (702)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~-- 238 (702)
+....+.|+|+.. ++....+..+.|..+....+ ....+|...|++++|+|+|++|++++ ++ +++|+.. +....
T Consensus 12 v~~~~~s~dg~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~-~~~~~~~ 87 (337)
T 1gxr_A 12 AYSFHVTADGQMQ-PVPFPPDALIGPGIPRHARQ-INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS-HPGNKSP 87 (337)
T ss_dssp CCEEEECSSSCEE-ECCCCTTSSSSTTCCSEEEE-EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT-STTCCSC
T ss_pred eeEEEECCCCCEE-EeecCCCcEeccccCCcccc-ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC-CCCceee
Confidence 4455667777743 34444444456655333333 33347999999999999999999999 66 8999998 44322
Q ss_pred -eee---cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCccc
Q 005315 239 -MRY---AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSW 311 (702)
Q Consensus 239 -~~~---~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w 311 (702)
..+ .|. .|.+++|+|++++|++++.+ +.|++||+.+++ ....+..|...+.
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~~i~------------ 145 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA----------STLSIWDLAAPTPRIKAELTSSAPACY------------ 145 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESS----------SEEEEEECCCC--EEEEEEECSSSCEE------------
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCC----------CcEEEEECCCCCcceeeecccCCCceE------------
Confidence 221 233 49999999999999999999 999999998887 5666777766553
Q ss_pred ceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 312 PVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 312 ~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
++.|+| ++++|++++ ++.|.+|++.+++.+.....|...+.+++|+|++++|++ ++.++ .|.+|++.+.+
T Consensus 146 -~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-----~~~dg--~i~~~d~~~~~ 216 (337)
T 1gxr_A 146 -ALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT-----GGLDN--TVRSWDLREGR 216 (337)
T ss_dssp -EEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE-----EETTS--EEEEEETTTTE
T ss_pred -EEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE-----EecCC--cEEEEECCCCc
Confidence 789999 999999998 999999999988877766667788999999999999998 44554 56667777666
Q ss_pred eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEE
Q 005315 391 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 470 (702)
Q Consensus 391 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 470 (702)
.+.... +......+.|+|+|++|+++..++. +.+|++.... ...+..|...|.+++|+|++++|++
T Consensus 217 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~---------i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 217 QLQQHD-FTSQIFSLGYCPTGEWLAVGMESSN---------VEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSEEEEEETTSC---------EEEEETTSSC----EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eEeeec-CCCceEEEEECCCCCEEEEEcCCCc---------EEEEECCCCC----eEEEcCCccceeEEEECCCCCEEEE
Confidence 554433 3445567899999999999988766 7888887543 2456688999999999999999999
Q ss_pred EEcCCCCCeEEEEEeecccCcCceEEEEEc-CCCceeEEEEccCCCEEEEEeccCCCceEEEEEC
Q 005315 471 IHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 534 (702)
Q Consensus 471 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~ 534 (702)
++.++ .|++|++.++. .+... ....+.+++|+|+|++|++++. ||.|++|++
T Consensus 283 ~~~dg---~i~~~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~ 335 (337)
T 1gxr_A 283 TGKDN---LLNAWRTPYGA------SIFQSKESSSVLSCDISVDDKYIVTGSG---DKKATVYEV 335 (337)
T ss_dssp EETTS---EEEEEETTTCC------EEEEEECSSCEEEEEECTTSCEEEEEET---TSCEEEEEE
T ss_pred ecCCC---cEEEEECCCCe------EEEEecCCCcEEEEEECCCCCEEEEecC---CCeEEEEEE
Confidence 99999 99999997654 22222 3557999999999999999998 999999986
No 35
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-31 Score=275.50 Aligned_cols=270 Identities=12% Similarity=0.171 Sum_probs=215.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
|...|.+++|+|++++|++++.| ++|+|||+.+++.+..+..|...+. +++|+| ++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~D----------g~v~iWd~~~~~~~~~~~~~~~~v~-------------~~~~s~-~~ 109 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQD----------GKLIIWDSYTTNKVHAIPLRSSWVM-------------TCAYAP-SG 109 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT----------TEEEEEETTTCCEEEEEECSSSCEE-------------EEEECT-TS
T ss_pred CCCceEEEEECCCCCEEEEEeCC----------CcEEEEECCCCCcceEeecCCccEE-------------EEEECC-CC
Confidence 33459999999999999999999 9999999999999999988877653 789999 99
Q ss_pred cEEEEec-CCeEEEEecCCcc----cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeee
Q 005315 322 KYFAKLG-KNMISVYETESFT----LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 396 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 396 (702)
++|++++ |+.|++|++.+.. .......|...|.++.|+|++. +++ ++.++.+++| ++.+.+
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s-----~s~d~~i~~w--d~~~~~------ 175 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVT-----SSGDTTCALW--DIETGQ------ 175 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEE-----EETTSCEEEE--ETTTTE------
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEE-----EECCCcEEEE--ECCCCc------
Confidence 9999999 9999999988653 2222334556677788877765 444 4455554433 221111
Q ss_pred ecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC
Q 005315 397 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 476 (702)
Q Consensus 397 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 476 (702)
....+.+|.+.|.+++|+|++++|++++.|+
T Consensus 176 ------------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~- 206 (340)
T 1got_B 176 ------------------------------------------------QTTTFTGHTGDVMSLSLAPDTRLFVSGACDA- 206 (340)
T ss_dssp ------------------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred ------------------------------------------------EEEEEcCCCCceEEEEECCCCCEEEEEeCCC-
Confidence 1123457899999999999999999999999
Q ss_pred CCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc----cCceee
Q 005315 477 RPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE----HFMATD 550 (702)
Q Consensus 477 ~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~----~~~i~~ 550 (702)
.|++||++++. .+..+.+| .|++++|+|+|++|++++. ||.|++||+.+++.+.... ...+++
T Consensus 207 --~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 207 --SAKLWDVREGM------CRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp --CEEEEETTTCS------EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred --cEEEEECCCCe------eEEEEcCCcCCEEEEEEcCCCCEEEEEcC---CCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 99999997654 55556544 6999999999999999998 9999999999877665432 246899
Q ss_pred eEECCCCCEEEEEEeecccccccEEEEEec-cceeee--eccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 551 VEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR--TLKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 551 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~--~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
++|+|+|++|++++. |+.+++|++. +..+.. .|...|.+++|+|++..|+|++.|+.|+
T Consensus 276 ~~~s~~g~~l~~g~~-----d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~ 337 (340)
T 1got_B 276 VSFSKSGRLLLAGYD-----DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp EEECTTSSEEEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred EEECCCCCEEEEECC-----CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEE
Confidence 999999999999999 9999999976 444333 3678999999999999999999887653
No 36
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-31 Score=283.04 Aligned_cols=323 Identities=10% Similarity=0.196 Sum_probs=241.2
Q ss_pred EEeecCcCcceeeee-cC-CCeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEc----cCCc------EEeeccC
Q 005315 227 AVWGGANTFNRLMRY-AH-PQVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDV----RTGK------VMRDFKG 293 (702)
Q Consensus 227 ~iw~~~~~~~~~~~~-~~-~~v~~i~fSpdg~-~l~t~s~d~~~~~~~~~~~~i~vwd~----~~g~------~~~~~~~ 293 (702)
.+|+.. ........ .| ..|.+++|+|+|+ +||+++.+ +.|++|++ .+++ ....+..
T Consensus 28 ~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 1r5m_A 28 SSDDLD-GFVKILKEIVKLDNIVSSTWNPLDESILAYGEKN----------SVARLARIVETDQEGKKYWKLTIIAELRH 96 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETB----------TEEEEEEEEEC------CEEEEEEEEEEC
T ss_pred ccccch-hhhhheeeeeccCceEEEEECCCCCcEEEEecCC----------ceEEEEEEecccCCccccccccccccccc
Confidence 478887 44444443 33 4699999999999 99999999 99999999 8888 4554444
Q ss_pred ----------CCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCC
Q 005315 294 ----------SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 362 (702)
Q Consensus 294 ----------~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~ 362 (702)
|...+. +++|+| ++++|++++ ++.|.+|+ .++..+.....|...|.+++|+|++
T Consensus 97 ~~~~~~~~~~~~~~v~-------------~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (425)
T 1r5m_A 97 PFALSASSGKTTNQVT-------------CLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG 161 (425)
T ss_dssp CCCCC------CBCEE-------------EEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS
T ss_pred cccccccccCCCCceE-------------EEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC
Confidence 232332 789999 999999998 99999999 5566665666677889999999999
Q ss_pred CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccc---------------cceeEEccCCCEEEEEEccccccccc
Q 005315 363 PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS---------------DCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 363 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
++|++ ++.++. |.+|++.+.+.+......... ...+.|++++. ++++..++.
T Consensus 162 ~~l~~-----~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~----- 228 (425)
T 1r5m_A 162 THIIS-----MDVENV--TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGA----- 228 (425)
T ss_dssp SEEEE-----EETTCC--EEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECGGGC-----
T ss_pred CEEEE-----EecCCe--EEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCe-----
Confidence 99998 555555 556666666555444433333 56678898865 666666655
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc--CCCce
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQA 505 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~v 505 (702)
+.+|++..... ...+..|...|.+++|+|++++|++++.++ .|++|++.++. .+..+ +...+
T Consensus 229 ----i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~------~~~~~~~~~~~i 292 (425)
T 1r5m_A 229 ----IFVYQITEKTP---TGKLIGHHGPISVLEFNDTNKLLLSASDDG---TLRIWHGGNGN------SQNCFYGHSQSI 292 (425)
T ss_dssp ----EEEEETTCSSC---SEEECCCSSCEEEEEEETTTTEEEEEETTS---CEEEECSSSBS------CSEEECCCSSCE
T ss_pred ----EEEEEcCCCce---eeeeccCCCceEEEEECCCCCEEEEEcCCC---EEEEEECCCCc------cceEecCCCccE
Confidence 78898875432 234557899999999999999999999999 99999997654 23333 34579
Q ss_pred eEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc-c
Q 005315 506 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-K 582 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~ 582 (702)
.+++|+|+| ++++++. +|.|++||+.+++.+.. .+...+++++|+|+|++|++++. |+.|++|++.. .
T Consensus 293 ~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 293 VSASWVGDD-KVISCSM---DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM-----DGQVNVYDLKKLN 363 (425)
T ss_dssp EEEEEETTT-EEEEEET---TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET-----TSCEEEEECHHHH
T ss_pred EEEEECCCC-EEEEEeC---CCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCc
Confidence 999999999 8888887 99999999998887764 45688999999999999999999 99999999874 3
Q ss_pred --------------------eeeee--ccc--cEeeEEEeeCCCCCCChhhHHHH
Q 005315 583 --------------------LLYRT--LKD--HFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 583 --------------------~l~~~--~~~--~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
.+... +.. .+.+++|+|++++|++++.++.|
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 364 SKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp C--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred cceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 34333 333 89999999999999988877654
No 37
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.5e-31 Score=269.36 Aligned_cols=264 Identities=15% Similarity=0.209 Sum_probs=219.6
Q ss_pred ceEEEEeCCceEEEecCCCCCC--CcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-C-CCee
Q 005315 173 DQFVIRSGTDTEVLWNDARHLK--PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-H-PQVK 247 (702)
Q Consensus 173 ~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~-~~v~ 247 (702)
..++..+.++++.+|+.. ... ....+.+|...|.+++|+|++.++|+++.|+ |+|||+. +++.+..+. + ..+.
T Consensus 49 ~~l~tgs~D~~v~vW~~~-~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~-~~~~~~~~~~~~~~~~ 126 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWR-DERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE-NGKQIKSIDAGPVDAW 126 (321)
T ss_dssp CEEEEEETTSCEEEEEEE-TTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEECCTTCCC
T ss_pred CEEEEEcCCCCEEEEECC-CCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC-CCCEEEEEeCCCccEE
Confidence 356677778899999973 222 2345789999999999999999999999999 8899999 777777664 2 3589
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe
Q 005315 248 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 327 (702)
Q Consensus 248 ~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~ 327 (702)
+++|+|+|++|++++.+ +.|++|++.+++....+..+...+. +++|+| ++++|+++
T Consensus 127 ~~~~spdg~~l~~g~~d----------g~v~i~~~~~~~~~~~~~~~~~~v~-------------~~~~sp-dg~~lasg 182 (321)
T 3ow8_A 127 TLAFSPDSQYLATGTHV----------GKVNIFGVESGKKEYSLDTRGKFIL-------------SIAYSP-DGKYLASG 182 (321)
T ss_dssp CEEECTTSSEEEEECTT----------SEEEEEETTTCSEEEEEECSSSCEE-------------EEEECT-TSSEEEEE
T ss_pred EEEECCCCCEEEEEcCC----------CcEEEEEcCCCceeEEecCCCceEE-------------EEEECC-CCCEEEEE
Confidence 99999999999999999 9999999999999888887766553 789999 99999999
Q ss_pred c-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeE
Q 005315 328 G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMY 406 (702)
Q Consensus 328 ~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (702)
+ |+.|++||+.+++.+.....|...|.+++|+|++++|++ ++.++.+++|. +....
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s-----~s~dg~i~iwd--~~~~~---------------- 239 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT-----ASDDGYIKIYD--VQHAN---------------- 239 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE-----ECTTSCEEEEE--TTTCC----------------
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE-----EcCCCeEEEEE--CCCcc----------------
Confidence 9 999999999998887777677778999999999999998 77777666543 21111
Q ss_pred EccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEee
Q 005315 407 WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 486 (702)
Q Consensus 407 ~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 486 (702)
....+.+|...|.+++|+|++.+|++++.|+ .|++||+.
T Consensus 240 --------------------------------------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~---~v~iwd~~ 278 (321)
T 3ow8_A 240 --------------------------------------LAGTLSGHASWVLNVAFCPDDTHFVSSSSDK---SVKVWDVG 278 (321)
T ss_dssp --------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETT
T ss_pred --------------------------------------eeEEEcCCCCceEEEEECCCCCEEEEEeCCC---cEEEEeCC
Confidence 0123457889999999999999999999999 99999997
Q ss_pred cccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 487 TAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 487 ~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
++. .+.++.++ .|.+++|+|+|++|++++. ||.|++||+.
T Consensus 279 ~~~------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~---d~~i~vwd~p 320 (321)
T 3ow8_A 279 TRT------CVHTFFDHQDQVWGVKYNGNGSKIVSVGD---DQEIHIYDCP 320 (321)
T ss_dssp TTE------EEEEECCCSSCEEEEEECTTSSEEEEEET---TCCEEEEECC
T ss_pred CCE------EEEEEcCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEeCC
Confidence 654 56666544 6999999999999999998 9999999974
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.3e-32 Score=281.90 Aligned_cols=314 Identities=13% Similarity=0.174 Sum_probs=200.7
Q ss_pred cccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005315 204 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~ 283 (702)
.--..+.+++++.|+.+.+......|+++ ...+. .|...|.+++|||||++||+++.+... --++.|++|+..
T Consensus 6 ~~~sg~d~g~~~~~~~~~g~~~~~~w~~p-~~~p~--~H~~~V~~v~fSpDG~~las~s~d~~~----~wd~~v~~~~~~ 78 (357)
T 4g56_B 6 HHSSGVDLGTENLYFQSNGSSKGSAWGRP-VTAPA--CMEVQIGAVRYRRDGALLLAASSLSSR----TWGGSIWVFKDP 78 (357)
T ss_dssp -------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSS----SCCEEEEEESSC
T ss_pred ccccCCCCCccceEEecCCCccccccCCC-CCCcc--cccCCEEEEEECCCCCEEEEEcCCCCc----cccCeEEEEECC
Confidence 33456778888888777776668899987 33321 233359999999999999999974110 001789999987
Q ss_pred CCcEEeec----cCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCccccccee----eccCCeeE
Q 005315 284 TGKVMRDF----KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKS----LKVENVMD 355 (702)
Q Consensus 284 ~g~~~~~~----~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~----~~~~~v~~ 355 (702)
++.....+ ..|...+. +++|+| ++++++++.+++|+|||+.+++.+.... .|...|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~V~-------------~~~~s~-d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~ 144 (357)
T 4g56_B 79 EGAPNESLCTAGVQTEAGVT-------------DVAWVS-EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKT 144 (357)
T ss_dssp C---CGGGCSEEEECSSCEE-------------EEEEET-TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred CCCcceeEecccCCCCCCEE-------------EEEEcC-CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence 77654433 23333332 789999 9998887779999999998876543221 35567999
Q ss_pred EEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEE
Q 005315 356 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF 435 (702)
Q Consensus 356 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~ 435 (702)
++|+|++++|++ ++.++.+++| +..+.+
T Consensus 145 v~~spdg~~l~s-----gs~dg~v~iw--d~~~~~--------------------------------------------- 172 (357)
T 4g56_B 145 LSVFSDGTQAVS-----GGKDFSVKVW--DLSQKA--------------------------------------------- 172 (357)
T ss_dssp EEECSSSSEEEE-----EETTSCEEEE--ETTTTE---------------------------------------------
T ss_pred EEECCCCCEEEE-----EeCCCeEEEE--ECCCCc---------------------------------------------
Confidence 999999999888 6666665554 322111
Q ss_pred EEecCCcceeEEEecCCCCceeEEEEeeCCc-EEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEcc
Q 005315 436 RIKERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSP 512 (702)
Q Consensus 436 ~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~sp 512 (702)
....+.+|...|.+++|+|++. +|++++.|+ .|++||++++... ....+. ...+.+++|+|
T Consensus 173 ---------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg---~v~~wd~~~~~~~----~~~~~~~~~~~v~~v~~sp 236 (357)
T 4g56_B 173 ---------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG---RILLWDTRKPKPA----TRIDFCASDTIPTSVTWHP 236 (357)
T ss_dssp ---------EEEEECCCSSCEEEEEECTTCSSCEEEEETTS---CEEECCTTSSSCB----CBCCCTTCCSCEEEEEECT
T ss_pred ---------EEEEEcCCCCCEEEEEEccCCCceeeeeccCC---ceEEEECCCCcee----eeeeeccccccccchhhhh
Confidence 1123457889999999999885 788888888 9999999765421 111122 33689999999
Q ss_pred CC-CEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCC-CEEEEEEeecccccccEEEEEeccceeee-e
Q 005315 513 SG-RFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTG-RYVATAVTSVHEMENGFNIWSFNGKLLYR-T 587 (702)
Q Consensus 513 dg-~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg-~~l~t~s~~~~~~d~~v~iw~~~g~~l~~-~ 587 (702)
++ .+|++++. |+.|++||+.+++.+.. .+...|++++|+|+| ++||+++. |+.|+|||+....+.. .
T Consensus 237 ~~~~~la~g~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~-----D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 237 EKDDTFACGDE---TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE-----DCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp TSTTEEEEEES---SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEET-----TSCEEEECTTSCEEEEEC
T ss_pred cccceEEEeec---ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeC-----CCEEEEEECCCCcEeEEC
Confidence 85 57788887 99999999998877654 566889999999998 57899999 9999999988544333 2
Q ss_pred -ccccEeeEEEee-CCCCCCChhhHHHHH
Q 005315 588 -LKDHFFQFLWRP-RPPSFLTPEKEEEIA 614 (702)
Q Consensus 588 -~~~~i~~~~w~p-~~~~l~s~~~d~~i~ 614 (702)
|.+.|++++|+| ++..|+|++.|+.|+
T Consensus 309 ~H~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 309 SHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 678999999999 788999999998875
No 39
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.5e-30 Score=265.47 Aligned_cols=281 Identities=16% Similarity=0.238 Sum_probs=215.6
Q ss_pred cccccCCCcccceEEECCC-CcEEEEEeCCc-eEEeecCcCcc-----eeeee-cC-CCeeEEEecCCCCEEEEEcCCCC
Q 005315 196 EPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGANTFN-----RLMRY-AH-PQVKLIDFSPGEKYLVTYSSHEP 266 (702)
Q Consensus 196 ~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~~~-----~~~~~-~~-~~v~~i~fSpdg~~l~t~s~d~~ 266 (702)
...+++|...|++|+|+|+ +++|||++.|+ |+||++. ... ....+ .| ..|.+++|+|+|++|++++.|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~-~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-- 107 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT-RDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-- 107 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEEC-CSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC-CCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc--
Confidence 3458899999999999998 68999999999 8999987 332 23333 23 359999999999999999999
Q ss_pred CCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccc-
Q 005315 267 SNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID- 344 (702)
Q Consensus 267 ~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~- 344 (702)
+.|++|+...+........+..... ...+++ ++.+|++++ |+.+.+|++.......
T Consensus 108 --------~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 108 --------GTLRLWDLTTGTTTRRFVGHTKDVL-------------SVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp --------SEEEEEETTTTEEEEEEECCSSCEE-------------EEEECT-TSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred --------ccceEEeecccceeeeecCCCCcee-------------EEEEee-cCccceeecCCCeEEEEEeCCCceEEE
Confidence 9999999988888777776655542 678899 999999998 9999999987544322
Q ss_pred ceeeccCCeeEEEeCCCCC--eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccc
Q 005315 345 KKSLKVENVMDFSWSPTDP--IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 422 (702)
Q Consensus 345 ~~~~~~~~v~~~~~sp~~~--~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 422 (702)
....+...+..++|++++. ++++ ++.++.+++| +....+
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~s-----~~~d~~i~i~--d~~~~~-------------------------------- 206 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSSNPIIVS-----CGWDKLVKVW--NLANCK-------------------------------- 206 (340)
T ss_dssp CSSSCSSCEEEEEECSCSSSCEEEE-----EETTSCEEEE--ETTTTE--------------------------------
T ss_pred EeccccCcccceEEccCCCCcEEEE-----EcCCCEEEEE--ECCCCc--------------------------------
Confidence 2233556688888887653 3444 3344444332 221111
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC
Q 005315 423 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG 502 (702)
Q Consensus 423 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 502 (702)
....+.+|.+.|.+++|+|++++|++++.|+ .|++||+++.. .+..+..
T Consensus 207 ----------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg---~i~iwd~~~~~------~~~~~~~ 255 (340)
T 4aow_A 207 ----------------------LKTNHIGHTGYLNTVTVSPDGSLCASGGKDG---QAMLWDLNEGK------HLYTLDG 255 (340)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTC---EEEEEETTTTE------EEEEEEC
T ss_pred ----------------------eeeEecCCCCcEEEEEECCCCCEEEEEeCCC---eEEEEEeccCc------eeeeecC
Confidence 1123457889999999999999999999999 99999997544 4555543
Q ss_pred -CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-----------cccCceeeeEECCCCCEEEEEEeecccc
Q 005315 503 -KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----------AEHFMATDVEWDPTGRYVATAVTSVHEM 570 (702)
Q Consensus 503 -~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-----------~~~~~i~~~~~spdg~~l~t~s~~~~~~ 570 (702)
..+..++|+|++.+++.+ . |+.|++||+.++..+.. .|...|++++|+|+|++|++++.
T Consensus 256 ~~~v~~~~~~~~~~~~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----- 326 (340)
T 4aow_A 256 GDIINALCFSPNRYWLCAA-T---GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT----- 326 (340)
T ss_dssp SSCEEEEEECSSSSEEEEE-E---TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET-----
T ss_pred CceEEeeecCCCCceeecc-C---CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC-----
Confidence 478999999998766655 4 89999999987655432 45578999999999999999999
Q ss_pred cccEEEEEec
Q 005315 571 ENGFNIWSFN 580 (702)
Q Consensus 571 d~~v~iw~~~ 580 (702)
|+.|+||++.
T Consensus 327 Dg~v~iW~~~ 336 (340)
T 4aow_A 327 DNLVRVWQVT 336 (340)
T ss_dssp TSCEEEEEEE
T ss_pred CCEEEEEeCC
Confidence 9999999986
No 40
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.98 E-value=2.3e-30 Score=269.31 Aligned_cols=271 Identities=15% Similarity=0.211 Sum_probs=215.1
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
|...|.+++|+|++++|+|++.| ++|+|||..+++....+..|...+. +++|+| ++
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~D----------g~v~vWd~~~~~~~~~~~~~~~~v~-------------~~~~sp-~g 118 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQD----------GKVIVWDSFTTNKEHAVTMPCTWVM-------------ACAYAP-SG 118 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT----------SEEEEEETTTCCEEEEEECSSSCCC-------------EEEECT-TS
T ss_pred CCCeEEEEEECCCCCEEEEEeCC----------CeEEEEECCCCCcceEEecCCCCEE-------------EEEECC-CC
Confidence 34459999999999999999999 9999999999999888887766553 789999 99
Q ss_pred cEEEEec-CCeEEEEecCCcc------cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 322 KYFAKLG-KNMISVYETESFT------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
.+|++++ |+.+.+|++.... .......|...|.+++|+|++..|++ ++.|+.+++| ++.+.+
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-----~s~D~~v~lw--d~~~~~---- 187 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT-----ASGDGTCALW--DVESGQ---- 187 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEE-----EETTSEEEEE--ETTTCC----
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEE-----EeCCCcEEEE--eCCCCe----
Confidence 9999999 9999999986432 12223346667888888888887777 5566555543 322211
Q ss_pred eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee--CCcEEEEEE
Q 005315 395 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP--KGHRFAVIH 472 (702)
Q Consensus 395 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp--~g~~l~~~~ 472 (702)
....+.+|...|.+++|+| +|++|++++
T Consensus 188 --------------------------------------------------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 188 --------------------------------------------------LLQSFHGHGADVLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp --------------------------------------------------EEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred --------------------------------------------------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence 0123447788999999988 578999999
Q ss_pred cCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeec----ccC
Q 005315 473 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA----EHF 546 (702)
Q Consensus 473 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~----~~~ 546 (702)
.|+ .|++||++++. .+..+..| .|++++|+|+|++|++++. |+.|++||+...+.+... +..
T Consensus 218 ~Dg---~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 218 CDK---KAMVWDMRSGQ------CVQAFETHESDVNSVRYYPSGDAFASGSD---DATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp TTS---CEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCTTCCS
T ss_pred CCC---eEEEEECCCCc------EEEEecCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEECCCCcEEEEEcCCCccc
Confidence 999 99999997654 55555544 7999999999999999998 999999999977655432 224
Q ss_pred ceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 547 MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 547 ~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.+++++|+|+|++|++++. |+.+++||+. +..+... |...|.+++|+|++++|++++.|+.|+
T Consensus 286 ~~~~~~~s~~g~~l~~g~~-----d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~ 351 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYN-----DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351 (354)
T ss_dssp CEEEEEECTTSSEEEEEET-----TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred ceeEEEEeCCCCEEEEEEC-----CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEE
Confidence 6889999999999999999 9999999985 5555443 678999999999999999999887553
No 41
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=1.8e-30 Score=295.50 Aligned_cols=280 Identities=14% Similarity=0.214 Sum_probs=218.5
Q ss_pred cccCCCcccceEEECCCC-cEEEEEeCCc-eEEeecCcCc----ceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCC
Q 005315 198 VYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTF----NRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNP 269 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~----~~~~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~ 269 (702)
.+.+|...|++|+|+|++ .+|++++.|+ |+||++.... .....+ .|. .|.+++|||+|++|++++.|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D----- 451 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD----- 451 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC-----
Confidence 467899999999999875 7999999999 8899987221 122233 344 59999999999999999999
Q ss_pred cCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccc---c
Q 005315 270 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID---K 345 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~---~ 345 (702)
++|+|||+.++..++.+.+|...+. +++|+| ++++|++++ |++|++|+........ .
T Consensus 452 -----g~v~vwd~~~~~~~~~~~~h~~~v~-------------~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 452 -----GELRLWDLAAGVSTRRFVGHTKDVL-------------SVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp -----SEEEEEETTTTEEEEEEECCSSCEE-------------EEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred -----CcEEEEECCCCcceeEEeCCCCCEE-------------EEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence 9999999999999999999988764 799999 999999999 9999999976432211 1
Q ss_pred eeeccCCeeEEEeCCCC--CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccc
Q 005315 346 KSLKVENVMDFSWSPTD--PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 423 (702)
Q Consensus 346 ~~~~~~~v~~~~~sp~~--~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 423 (702)
...|...|.+++|+|++ ..|++ ++.++.+++|. +
T Consensus 513 ~~~h~~~v~~~~~~~~~~~~~l~s-----~s~d~~v~vwd--~------------------------------------- 548 (694)
T 3dm0_A 513 GEGHRDWVSCVRFSPNTLQPTIVS-----ASWDKTVKVWN--L------------------------------------- 548 (694)
T ss_dssp TTSCSSCEEEEEECSCSSSCEEEE-----EETTSCEEEEE--T-------------------------------------
T ss_pred CCCCCCcEEEEEEeCCCCcceEEE-----EeCCCeEEEEE--C-------------------------------------
Confidence 12355568888888876 45666 55666655443 2
Q ss_pred ccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC-
Q 005315 424 TKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG- 502 (702)
Q Consensus 424 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~- 502 (702)
.... ....+.+|.+.|.+++|+|+|++|++++.|+ .|++||+.++. .+..+..
T Consensus 549 --------------~~~~---~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg---~i~iwd~~~~~------~~~~~~~~ 602 (694)
T 3dm0_A 549 --------------SNCK---LRSTLAGHTGYVSTVAVSPDGSLCASGGKDG---VVLLWDLAEGK------KLYSLEAN 602 (694)
T ss_dssp --------------TTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTS---BCEEEETTTTE------EEECCBCS
T ss_pred --------------CCCc---EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCc------eEEEecCC
Confidence 1110 1123457899999999999999999999999 99999997654 4555543
Q ss_pred CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc---------------------cCceeeeEECCCCCEEE
Q 005315 503 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---------------------HFMATDVEWDPTGRYVA 561 (702)
Q Consensus 503 ~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~---------------------~~~i~~~~~spdg~~l~ 561 (702)
..+.+++|+|++.+|++++ ++.|++||+.+++.+.... ...+++++|||+|++|+
T Consensus 603 ~~v~~~~~sp~~~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 603 SVIHALCFSPNRYWLCAAT----EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp SCEEEEEECSSSSEEEEEE----TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred CcEEEEEEcCCCcEEEEEc----CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 4689999999999888776 6779999999877654321 11367899999999999
Q ss_pred EEEeecccccccEEEEEec
Q 005315 562 TAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 562 t~s~~~~~~d~~v~iw~~~ 580 (702)
+++. |+.|+||++.
T Consensus 679 sgs~-----Dg~i~iW~i~ 692 (694)
T 3dm0_A 679 SGYT-----DGVIRVWGIG 692 (694)
T ss_dssp EEET-----TSEEEEEEC-
T ss_pred EEcC-----CCeEEEEecc
Confidence 9999 9999999974
No 42
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=2.6e-30 Score=270.91 Aligned_cols=296 Identities=15% Similarity=0.184 Sum_probs=223.7
Q ss_pred ccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc--eeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005315 199 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 199 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~ 273 (702)
+..|...|++++|+|+|++||+++.++ |.||+.. +.+ .+..+. |. .|.+++|+|++++|++++.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--------- 73 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD--------- 73 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEE-TTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT---------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC---------
Confidence 456889999999999999999999888 8899998 654 555553 44 59999999999999999999
Q ss_pred ccEEEEEEccCCcEEeec--cCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccc---ccce-
Q 005315 274 RVVINIFDVRTGKVMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL---IDKK- 346 (702)
Q Consensus 274 ~~~i~vwd~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~---~~~~- 346 (702)
+.|++||+.+++....+ ..|...+. ++.|+| ++++|++++ ++.|++|++..... ....
T Consensus 74 -g~i~vwd~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 74 -RNAYVWTLKGRTWKPTLVILRINRAAR-------------CVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp -SCEEEEEEETTEEEEEEECCCCSSCEE-------------EEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred -CeEEEEECCCCeeeeeEEeecCCCcee-------------EEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence 99999999888754443 44544442 789999 999999998 99999999987653 1111
Q ss_pred eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccc
Q 005315 347 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 426 (702)
Q Consensus 347 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 426 (702)
..|...|.+++|+|++++|++ ++.++.+++|.............. .|...-
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~-----~~~dg~i~~~d~~~~~~~~~~~~~---------~~~~~~--------------- 189 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAA-----GSCDFKCRIFSAYIKEVEERPAPT---------PWGSKM--------------- 189 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEE-----EETTSCEEEEECCCTTTSCCCCCB---------TTBSCC---------------
T ss_pred cccCCCeeEEEEcCCCCEEEE-----EcCCCCEEEEEccccccccccccc---------cccccc---------------
Confidence 234567999999999999998 667777666554322211000000 010000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--Cc
Q 005315 427 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQ 504 (702)
Q Consensus 427 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~ 504 (702)
........+.+|...|.+++|+|++++|++++.|+ .|++||++++. .+..+.. ..
T Consensus 190 --------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~------~~~~~~~~~~~ 246 (372)
T 1k8k_C 190 --------------PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS---TVCLADADKKM------AVATLASETLP 246 (372)
T ss_dssp --------------CTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT---EEEEEEGGGTT------EEEEEECSSCC
T ss_pred --------------chhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC---EEEEEECCCCc------eeEEEccCCCC
Confidence 00001123447789999999999999999999999 99999997654 4455443 47
Q ss_pred eeEEEEccCCCEEEEEeccCCCceEEEEECCC--cc-----------------------------------------eee
Q 005315 505 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE--LE-----------------------------------------TMA 541 (702)
Q Consensus 505 v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~--~~-----------------------------------------~~~ 541 (702)
+.+++|+|+|++|+++ . ++.|++|++.+ ++ .+.
T Consensus 247 v~~~~~~~~~~~l~~~-~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 247 LLAVTFITESSLVAAG-H---DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp EEEEEEEETTEEEEEE-T---TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred eEEEEEecCCCEEEEE-e---CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 9999999999988887 5 89999999987 31 122
Q ss_pred ecccCceeeeEEC-CCC---CEEEEEEeecccccccEEEEEec
Q 005315 542 TAEHFMATDVEWD-PTG---RYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 542 ~~~~~~i~~~~~s-pdg---~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
..|...|++++|+ ++| ++|++++. |+.|++|++.
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~-----Dg~i~~W~~~ 360 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGM-----DGGMSIWDVR 360 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEET-----TSEEEEEEHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecC-----CCceEEEEec
Confidence 4677899999966 677 99999999 9999999986
No 43
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=6.8e-30 Score=270.37 Aligned_cols=279 Identities=15% Similarity=0.237 Sum_probs=217.6
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc------eeeee-cCC-CeeEEEecCC----C---CEEEE
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN------RLMRY-AHP-QVKLIDFSPG----E---KYLVT 260 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~------~~~~~-~~~-~v~~i~fSpd----g---~~l~t 260 (702)
..+.+|...|++++|+| ++||+++.++ |+||+.. +.. .+..+ .|. .|.+++|+|+ | ++|++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNK-LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESB-CCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECC-CcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 45678999999999999 8999999998 8899998 554 34444 344 5999999999 9 99999
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCcE-----EeeccCCC-----cccccCCCCCCCCcccceEEEc----CCCCcE-EE
Q 005315 261 YSSHEPSNPRDANRVVINIFDVRTGKV-----MRDFKGSA-----DEFAVGGTGGVAGVSWPVFRWG----GGKDKY-FA 325 (702)
Q Consensus 261 ~s~d~~~~~~~~~~~~i~vwd~~~g~~-----~~~~~~~~-----~~~~~~~~~~~~~~~w~~~~~s----~~dg~~-la 325 (702)
++.+ +.|++|++.+++. +..+..|. ..+. +++|+ | ++++ |+
T Consensus 87 ~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~-~~~~~l~ 142 (397)
T 1sq9_A 87 TSFS----------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-------------ALKWGASNDR-LLSHRLV 142 (397)
T ss_dssp EETT----------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-------------EEEEECCC-----CEEEE
T ss_pred EcCC----------CCEEEEEccCCcccccccceeecccccccCCCcEE-------------EEEEeeccCC-CCceEEE
Confidence 9999 9999999998887 78888773 4442 79999 9 9999 99
Q ss_pred Eec-CCeEEEEecCC------ccccc-----cee-------eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEec
Q 005315 326 KLG-KNMISVYETES------FTLID-----KKS-------LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 386 (702)
Q Consensus 326 ~~~-d~~i~v~d~~~------~~~~~-----~~~-------~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 386 (702)
+++ ++.|++|++.+ +..+. ... .+...|.+++|+|++ +|++ ++.++. |.+|++
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-----~~~dg~--i~i~d~ 214 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT-----GFNNGT--VQISEL 214 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-----ECTTSE--EEEEET
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEE-----EeCCCc--EEEEEC
Confidence 988 99999999998 65554 332 245567888888888 7776 444444 333443
Q ss_pred CCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC---C---CCceeEEE
Q 005315 387 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN---K---NDKIIAFA 460 (702)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~---h---~~~v~~~~ 460 (702)
.+.+. ...+.. | ...|.+++
T Consensus 215 ~~~~~------------------------------------------------------~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 215 STLRP------------------------------------------------------LYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp TTTEE------------------------------------------------------EEEEECCC---CCCCCEEEEE
T ss_pred CCCce------------------------------------------------------eEEEeccccccccCCccceEE
Confidence 22111 011223 6 88999999
Q ss_pred EeeCCcEEEEEEcC---CCCCeEEEEEeecccCcCceEEEEEcC---------------CCceeEEEEccCCCEEEEEec
Q 005315 461 WEPKGHRFAVIHGD---SPRPDISFYSMRTAQHAGRVSKLTTLK---------------GKQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 461 ~sp~g~~l~~~~~d---~~~~~v~i~d~~~~~~~~~~~~~~~~~---------------~~~v~~~~~spdg~~l~~~~~ 522 (702)
|+|++++|++++.+ + .|++||++++. .+..+. ...+.+++|+|+|++|++++.
T Consensus 241 ~~~~~~~l~~~~~d~~~g---~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFG---CITLYETEFGE------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp ECSSTTEEEEEEEETTEE---EEEEEETTTCC------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred ECCCCCEEEEEecCCCCc---eEEEEECCCCc------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence 99999999999998 7 99999997654 444443 347999999999999999998
Q ss_pred cCCCceEEEEECCCcceeeec--------c---------------cCceeeeEECCCC----------CEEEEEEeeccc
Q 005315 523 KGFNGQLEFYNVDELETMATA--------E---------------HFMATDVEWDPTG----------RYVATAVTSVHE 569 (702)
Q Consensus 523 ~~~dg~v~i~d~~~~~~~~~~--------~---------------~~~i~~~~~spdg----------~~l~t~s~~~~~ 569 (702)
||.|++||+.+++.+... + ...|++++|+|+| ++|++++.
T Consensus 312 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~---- 384 (397)
T 1sq9_A 312 ---DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL---- 384 (397)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET----
T ss_pred ---CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC----
Confidence 999999999988776543 3 6789999999999 79999999
Q ss_pred ccccEEEEEecc
Q 005315 570 MENGFNIWSFNG 581 (702)
Q Consensus 570 ~d~~v~iw~~~g 581 (702)
|+.|++|++.+
T Consensus 385 -dg~i~iw~~~~ 395 (397)
T 1sq9_A 385 -DRSIRWFREAG 395 (397)
T ss_dssp -TTEEEEEEEEC
T ss_pred -CCcEEEEEcCC
Confidence 99999999874
No 44
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=268.50 Aligned_cols=286 Identities=16% Similarity=0.253 Sum_probs=225.9
Q ss_pred cEEeeccCCCc-ccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccce---eeccCCeeEEEeCC
Q 005315 286 KVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK---SLKVENVMDFSWSP 360 (702)
Q Consensus 286 ~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~sp 360 (702)
.++.++.+|.. .+ | .++|+| +|++||+++ |+.|+||++.++...... ..|...|.+++|+|
T Consensus 6 ~~~~~~~~h~~~~v------------~-~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp 71 (345)
T 3fm0_A 6 VLLGRVPAHPDSRC------------W-FLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP 71 (345)
T ss_dssp EEEEEECCSTTSCE------------E-EEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT
T ss_pred EEeeeecCCCCCcE------------E-EEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC
Confidence 45677777765 44 3 689999 999999999 999999999876533222 24667899999999
Q ss_pred CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecC
Q 005315 361 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 440 (702)
Q Consensus 361 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 440 (702)
++++|++ ++.|+.+++|..+......+.....+......+.|+|+|++|++++.++. +.+|++...
T Consensus 72 ~g~~l~s-----~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~---------v~iwd~~~~ 137 (345)
T 3fm0_A 72 CGNYLAS-----ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS---------VWVWEVDEE 137 (345)
T ss_dssp TSSEEEE-----EETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEEEEECTT
T ss_pred CCCEEEE-----EECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe---------EEEEECCCC
Confidence 9999999 88888888887665544444444445556677899999999999999887 899999865
Q ss_pred CcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEE
Q 005315 441 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIV 518 (702)
Q Consensus 441 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~ 518 (702)
........+.+|...|.+++|+|++++|++++.|+ .|++|++..+. ......+.+| .|++++|+|+|++|+
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~---~i~~w~~~~~~----~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD---TVKLYREEEDD----WVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS---CEEEEEEETTE----EEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC---cEEEEEecCCC----EEEEEEecCCCCceEEEEECCCCCEEE
Confidence 54434455778999999999999999999999999 99999997543 2244556554 799999999999999
Q ss_pred EEeccCCCceEEEEECCCc---------------ceeee---cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 519 LAGLKGFNGQLEFYNVDEL---------------ETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 519 ~~~~~~~dg~v~i~d~~~~---------------~~~~~---~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+++. |+.|++|+.... +.+.+ .|...|.+++|+|++..|++++. |+.+++|+..
T Consensus 211 s~s~---D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d~~i~vw~~~ 282 (345)
T 3fm0_A 211 SCSD---DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-----DDAIRVFQED 282 (345)
T ss_dssp EEET---TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-----TSCEEEEEEC
T ss_pred EEeC---CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-----CCeEEEEEeC
Confidence 9998 999999996321 11211 36678999999999999999999 9999999986
Q ss_pred cce---------ee---eeccccEeeEEEeeCCC-CCCChhhHHHHH
Q 005315 581 GKL---------LY---RTLKDHFFQFLWRPRPP-SFLTPEKEEEIA 614 (702)
Q Consensus 581 g~~---------l~---~~~~~~i~~~~w~p~~~-~l~s~~~d~~i~ 614 (702)
... .. ..|...|.+++|+|++. .|+|++.|+.|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~ 329 (345)
T 3fm0_A 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA 329 (345)
T ss_dssp TTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEE
Confidence 421 11 23567899999999985 788999998875
No 45
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=1.1e-30 Score=274.74 Aligned_cols=290 Identities=11% Similarity=0.205 Sum_probs=222.6
Q ss_pred EeecCcCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCC
Q 005315 228 VWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 305 (702)
Q Consensus 228 iw~~~~~~~~~~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~ 305 (702)
.|+.. .......+ .|. .|.+++|||+|++|++++.| ++|+|||+.+++.+..+..|...+.
T Consensus 50 ~~~~~-~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D----------~~v~iWd~~~~~~~~~~~~h~~~v~------ 112 (380)
T 3iz6_a 50 SFNPT-DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQD----------GRLIVWNALTSQKTHAIKLHCPWVM------ 112 (380)
T ss_dssp CCCCC-CCEEEEEECCCSSCEEEEEECTTSSCEEEEETT----------SEEEEEETTTTEEEEEEECCCTTCC------
T ss_pred ccccc-eeEEeecccccccEEEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCccceEEecCCCCEE------
Confidence 45554 44444444 344 59999999999999999999 9999999999999999998877653
Q ss_pred CCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc-------cccceeeccCCeeEEEeCCCC-CeEEEEeecCCCCC
Q 005315 306 VAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-------LIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGN 376 (702)
Q Consensus 306 ~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~-------~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~ 376 (702)
+++|+| ++++|++++ |+.+++|++.+.. .......|...|.++.|+|++ ..|++ ++.|
T Consensus 113 -------~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s-----~s~D 179 (380)
T 3iz6_a 113 -------ECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT-----GSGD 179 (380)
T ss_dssp -------CCEECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE-----ECTT
T ss_pred -------EEEECC-CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE-----ECCC
Confidence 689999 999999999 9999999987532 222334566678889999974 45777 6777
Q ss_pred CCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005315 377 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 456 (702)
Q Consensus 377 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 456 (702)
+.+++| ++.+.+.+. . +.. ....+|...|
T Consensus 180 ~~i~~w--d~~~~~~~~----------------------~------------------~~~---------~~~~~h~~~v 208 (380)
T 3iz6_a 180 QTCVLW--DVTTGQRIS----------------------I------------------FGS---------EFPSGHTADV 208 (380)
T ss_dssp SCEEEE--CTTTCCEEE----------------------E------------------ECC---------CSSSSCCSCE
T ss_pred CcEEEE--EcCCCcEEE----------------------E------------------eec---------ccCCCCccCe
Confidence 776654 332222110 0 000 0013678899
Q ss_pred eEEEEee-CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEE
Q 005315 457 IAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYN 533 (702)
Q Consensus 457 ~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d 533 (702)
.+++|+| ++++|++++.|+ .|++||++.... .+..+.+| .|++++|+|+|++|++++. ||.|++||
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~---~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---D~~i~lwd 277 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDT---TVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDGQRFGTGSD---DGTCRLFD 277 (380)
T ss_dssp EEEEECSSSCCEEEEEETTS---CEEEEETTTTCC-----CCEEECCCSSCCCEEEECTTSSEEEEECS---SSCEEEEE
T ss_pred EEEEeecCCCCEEEEEECCC---eEEEEECCCCCc-----ceEEECCcCCCeEEEEEecCCCeEEEEcC---CCeEEEEE
Confidence 9999987 889999999999 999999964321 34445444 7999999999999999998 99999999
Q ss_pred CCCcceeeecc---------cCceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeee------eccccEeeEEE
Q 005315 534 VDELETMATAE---------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR------TLKDHFFQFLW 597 (702)
Q Consensus 534 ~~~~~~~~~~~---------~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~------~~~~~i~~~~w 597 (702)
+.+++.+.... ...+++++|+|+|++|++++. |+.+++||.. +..+.. .|...|.+++|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred CCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-----CCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 99887765421 124889999999999999999 9999999976 443332 36678999999
Q ss_pred eeCCCCCCChhhHHHHH
Q 005315 598 RPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 598 ~p~~~~l~s~~~d~~i~ 614 (702)
+|++.+|+|++.|+.|+
T Consensus 353 s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 353 SSDGSALCTGSWDKNLK 369 (380)
T ss_dssp CSSSSEEEEECTTSCEE
T ss_pred CCCCCEEEEeeCCCCEE
Confidence 99999999999988765
No 46
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=7.8e-30 Score=263.45 Aligned_cols=278 Identities=13% Similarity=0.189 Sum_probs=200.6
Q ss_pred CccccccccCCCCCceEEEEeCCceEEEecCC------CCCCCc----ccccCCCcccceEEECCCCcEEEEEeCCc-eE
Q 005315 159 GENLQKWLTDEKARDQFVIRSGTDTEVLWNDA------RHLKPE----PVYKRSYWTESFVQWSPLGTYLATVHRQG-AA 227 (702)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~------~~~~~~----~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~ 227 (702)
...+.+..+.|+|+ +++.+++.+..+|+.. ....+. .....|...|++++|+|++ +|++++.+| |+
T Consensus 30 ~~~v~~~~fs~dG~--~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 30 ERQLEAARYRSDGA--LLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp CSEEEEEEECTTSC--EEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred cCCEEEEEECCCCC--EEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 35577778888886 4455556666677521 011111 1112355679999999996 577888888 88
Q ss_pred EeecCcCcceeeee-----cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccC
Q 005315 228 VWGGANTFNRLMRY-----AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVG 301 (702)
Q Consensus 228 iw~~~~~~~~~~~~-----~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~ 301 (702)
|||+. +.+.+..+ .|. .|.+++|||+|++|++++.| ++|+|||+.++++++.+.+|...+.
T Consensus 107 lWd~~-~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d----------~~i~iwd~~~~~~~~~~~~h~~~V~-- 173 (344)
T 4gqb_B 107 LWELD-ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD----------ICIKVWDLAQQVVLSSYRAHAAQVT-- 173 (344)
T ss_dssp EEEEC-TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----------SCEEEEETTTTEEEEEECCCSSCEE--
T ss_pred EEecc-CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC----------CeEEEEECCCCcEEEEEcCcCCceE--
Confidence 99998 55433222 355 49999999999999999999 9999999999999999999988774
Q ss_pred CCCCCCCcccceEEEcCCCCc-EEEEec-CCeEEEEecCCcccccceee--ccCCeeEEEeCCCC-CeEEEEeecCCCCC
Q 005315 302 GTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTD-PIISLFVPELGGGN 376 (702)
Q Consensus 302 ~~~~~~~~~w~~~~~s~~dg~-~la~~~-d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~sp~~-~~la~~~~~~~~~~ 376 (702)
++.|++ ++. +|++++ |++|++||+.+++....... +...+.+++|+|++ ++|++ ++.+
T Consensus 174 -----------~~~~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s-----g~~d 236 (344)
T 4gqb_B 174 -----------CVAASP-HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF-----GDEN 236 (344)
T ss_dssp -----------EEEECS-SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEE-----EETT
T ss_pred -----------EEEecC-CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEE-----eccC
Confidence 789999 875 678887 99999999998876654322 22347788888854 45565 4455
Q ss_pred CCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005315 377 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 456 (702)
Q Consensus 377 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 456 (702)
+.+++| ++.+.+ ....+.+|...|
T Consensus 237 g~v~~w--d~~~~~------------------------------------------------------~~~~~~~h~~~v 260 (344)
T 4gqb_B 237 GTVSLV--DTKSTS------------------------------------------------------CVLSSAVHSQCV 260 (344)
T ss_dssp SEEEEE--ESCC--------------------------------------------------------CCEEEECCSSCE
T ss_pred CcEEEE--ECCCCc------------------------------------------------------EEEEEcCCCCCE
Confidence 544433 322111 012345789999
Q ss_pred eEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCE-EEEEeccCCCceEEEE
Q 005315 457 IAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRF-IVLAGLKGFNGQLEFY 532 (702)
Q Consensus 457 ~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~-l~~~~~~~~dg~v~i~ 532 (702)
++++|+|+| ++|++++.|+ +|+|||+.++. . ..+.+| .|++++|||+|+. |++++. ||+|++|
T Consensus 261 ~~v~fsp~g~~~lasgs~D~---~i~vwd~~~~~------~-~~~~~H~~~V~~v~~sp~~~~llas~s~---D~~v~~w 327 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDC---SLAVLDSSLSE------L-FRSQAHRDFVRDATWSPLNHSLLTTVGW---DHQVVHH 327 (344)
T ss_dssp EEEEECSSSSCCEEEEETTS---CEEEECTTCCE------E-EEECCCSSCEEEEEECSSSTTEEEEEET---TSCEEEE
T ss_pred EEEEEccCCCeEEEEEeCCC---eEEEEECCCCc------E-EEEcCCCCCEEEEEEeCCCCeEEEEEcC---CCeEEEE
Confidence 999999998 5788999999 99999986543 2 234444 7999999999975 567787 9999999
Q ss_pred ECCCcc
Q 005315 533 NVDELE 538 (702)
Q Consensus 533 d~~~~~ 538 (702)
++.+..
T Consensus 328 ~v~~~~ 333 (344)
T 4gqb_B 328 VVPTEP 333 (344)
T ss_dssp ECCC--
T ss_pred ECCCCC
Confidence 998643
No 47
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=6.5e-30 Score=261.90 Aligned_cols=268 Identities=17% Similarity=0.275 Sum_probs=217.4
Q ss_pred CCCeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccC-----CcEEeeccCCCcccccCCCCCCCCcccceEEE
Q 005315 243 HPQVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRT-----GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 316 (702)
Q Consensus 243 ~~~v~~i~fSpdg-~~l~t~s~d~~~~~~~~~~~~i~vwd~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 316 (702)
...|.+++|+|++ ++|++++.| ++|++|++.+ +.+++.+.+|...+. +++|
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D----------~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~ 73 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRD----------KTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-------------DCTL 73 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETT----------SEEEEEEEEEETTEEEEEEEEEECCSSCEE-------------EEEE
T ss_pred cceEEEEEccCCCccEEEEecCC----------ccEEEecCCCCCccccccceEEeCCcccEE-------------EEEE
Confidence 3359999999975 899999999 9999999854 346778889887764 7899
Q ss_pred cCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee
Q 005315 317 GGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 395 (702)
Q Consensus 317 s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 395 (702)
+| ++++|++++ |++|++||+.+++.+.....|...|.+++|+|++.+|++ ++.|+.+++|.+.
T Consensus 74 s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-----~s~D~~i~vwd~~---------- 137 (319)
T 3frx_A 74 TA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS-----GSRDKTIKVWTIK---------- 137 (319)
T ss_dssp CT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEE-----EETTSCEEEEETT----------
T ss_pred CC-CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEE-----EeCCCeEEEEECC----------
Confidence 99 999999999 999999999999888777778888999999999999998 7778777765321
Q ss_pred eecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC------CcEEE
Q 005315 396 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK------GHRFA 469 (702)
Q Consensus 396 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~------g~~l~ 469 (702)
+.. ...+.+|...|.+++|+|. +..|+
T Consensus 138 ---------------~~~--------------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 138 ---------------GQC--------------------------------LATLLGHNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp ---------------SCE--------------------------------EEEECCCSSCEEEEEECCC------CCEEE
T ss_pred ---------------CCe--------------------------------EEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence 111 1223467888999999885 45899
Q ss_pred EEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-cccC
Q 005315 470 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHF 546 (702)
Q Consensus 470 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~ 546 (702)
+++.|+ .|++||+++.. ....+.+| .+++++|+|+|++|++++. ||.|++||+.+++.+.. ..+.
T Consensus 171 s~~~d~---~i~~wd~~~~~------~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~ 238 (319)
T 3frx_A 171 SAGNDK---MVKAWNLNQFQ------IEADFIGHNSNINTLTASPDGTLIASAGK---DGEIMLWNLAAKKAMYTLSAQD 238 (319)
T ss_dssp EEETTS---CEEEEETTTTE------EEEEECCCCSCEEEEEECTTSSEEEEEET---TCEEEEEETTTTEEEEEEECCS
T ss_pred EEeCCC---EEEEEECCcch------hheeecCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEecCCC
Confidence 999999 99999996543 44555444 7999999999999999998 99999999998887765 3457
Q ss_pred ceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeee-----------eccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 547 MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR-----------TLKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 547 ~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~-----------~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.+.+++|+|+|.+|++++. +.+++|++....+.. .+...+.+++|+|+|++|++++.|+.|+
T Consensus 239 ~v~~~~~sp~~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATA------TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp CEEEEEECSSSSEEEEEET------TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcC------CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 8999999999999988776 679999988543321 1235688999999999999999887664
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=9.1e-30 Score=268.18 Aligned_cols=290 Identities=12% Similarity=0.138 Sum_probs=211.6
Q ss_pred CCCcccccCCCcccceEEECCCC-cEEEEEeCCc-eEEeecCcCcceeeee---cCC-CeeEEEecC-CCCEEEEEcCCC
Q 005315 193 LKPEPVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFNRLMRY---AHP-QVKLIDFSP-GEKYLVTYSSHE 265 (702)
Q Consensus 193 ~~~~~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~~~~~~---~~~-~v~~i~fSp-dg~~l~t~s~d~ 265 (702)
......+.+|...|++++|+|+| ++||+++.++ |+||+.. +......+ .|. .|.+++|+| ++++|++++.+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d- 140 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYD-VQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR- 140 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETT-STTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCC-CcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-
Confidence 33445668899999999999999 9999999998 8899998 66655544 244 499999999 78999999999
Q ss_pred CCCCcCCCccEEEEEEccCCcEEeeccCCC---cccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc
Q 005315 266 PSNPRDANRVVINIFDVRTGKVMRDFKGSA---DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 341 (702)
Q Consensus 266 ~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~ 341 (702)
+.|++||+.+ ..+..+..+. ..+. +++|+| ++++|++++ ++.|++||+. ++
T Consensus 141 ---------~~i~iwd~~~-~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~ 195 (383)
T 3ei3_B 141 ---------GATTLRDFSG-SVIQVFAKTDSWDYWYC-------------CVDVSV-SRQMLATGDSTGRLLLLGLD-GH 195 (383)
T ss_dssp ---------TEEEEEETTS-CEEEEEECCCCSSCCEE-------------EEEEET-TTTEEEEEETTSEEEEEETT-SC
T ss_pred ---------CEEEEEECCC-CceEEEeccCCCCCCeE-------------EEEECC-CCCEEEEECCCCCEEEEECC-CC
Confidence 9999999874 6666665543 2221 789999 999999999 9999999994 55
Q ss_pred cccceeeccCCeeEEEeCCCCC-eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcc
Q 005315 342 LIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 420 (702)
.+.....|...|.+++|+|+++ +|++ ++.++.+++| ++.+.+ ..+..
T Consensus 196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s-----~~~d~~i~iw--d~~~~~------------------~~~~~------- 243 (383)
T 3ei3_B 196 EIFKEKLHKAKVTHAEFNPRCDWLMAT-----SSVDATVKLW--DLRNIK------------------DKNSY------- 243 (383)
T ss_dssp EEEEEECSSSCEEEEEECSSCTTEEEE-----EETTSEEEEE--EGGGCC------------------STTCE-------
T ss_pred EEEEeccCCCcEEEEEECCCCCCEEEE-----EeCCCEEEEE--eCCCCC------------------cccce-------
Confidence 5555556777899999999998 7776 5556554443 332210 00000
Q ss_pred cccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE
Q 005315 421 YTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT 499 (702)
Q Consensus 421 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~ 499 (702)
+...+|...|.+++|+| +|++|++++.|+ .|++||++++...........
T Consensus 244 --------------------------~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 244 --------------------------IAEMPHEKPVNAAYFNPTDSTKLLTTDQRN---EIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp --------------------------EEEEECSSCEEEEEECTTTSCEEEEEESSS---EEEEEETTBTTSCSEEEECCB
T ss_pred --------------------------EEEecCCCceEEEEEcCCCCCEEEEEcCCC---cEEEEECCCCccccccccccc
Confidence 11114688999999999 999999999999 999999976543211110000
Q ss_pred -cC------------CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeec----ccCceeeeEECCCCCEEEE
Q 005315 500 -LK------------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA----EHFMATDVEWDPTGRYVAT 562 (702)
Q Consensus 500 -~~------------~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~----~~~~i~~~~~spdg~~l~t 562 (702)
.. ...+..++|+|+|++ +++. ||.|++||+.+++.+... +...+..++|+|+|++|++
T Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~---d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND---KRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC---CCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred cccccccceEEeccCCCCceEEEecCCccc--ccCC---CCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 00 112333555666655 4444 999999999988887653 2355667799999999999
Q ss_pred EEeecccccccEEEEEecc
Q 005315 563 AVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 563 ~s~~~~~~d~~v~iw~~~g 581 (702)
+ . |+.|+||++.+
T Consensus 370 ~-s-----d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 G-M-----GFNILIWNRED 382 (383)
T ss_dssp E-E-----TTEEEEEECC-
T ss_pred e-c-----CCcEEEEecCC
Confidence 9 5 69999999864
No 49
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=3.6e-30 Score=268.93 Aligned_cols=312 Identities=10% Similarity=0.116 Sum_probs=231.7
Q ss_pred ccCCCcccceEEECCC---Cc--EEEEEeCCceEEeecCcCcceeeeec------C-CCeeEEEecCC----CCEEEEEc
Q 005315 199 YKRSYWTESFVQWSPL---GT--YLATVHRQGAAVWGGANTFNRLMRYA------H-PQVKLIDFSPG----EKYLVTYS 262 (702)
Q Consensus 199 ~~~~~~~v~~v~~Spd---g~--~lat~~~~~i~iw~~~~~~~~~~~~~------~-~~v~~i~fSpd----g~~l~t~s 262 (702)
..+|...|++++|+|+ +. ++++++.+.|.||+.. +...+..+. | ..|.+++|+|+ |++|++++
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH-SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC-GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcC-CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 3589999999999984 33 5555555559999998 655544442 2 34999999999 77999999
Q ss_pred CCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc
Q 005315 263 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 341 (702)
Q Consensus 263 ~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~ 341 (702)
.+ +.|++||+.+++.+..+.+|...+. +++|+|.++.+|++++ |+.|++|++.+++
T Consensus 93 ~d----------g~i~v~d~~~~~~~~~~~~~~~~i~-------------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 93 SR----------GIIRIINPITMQCIKHYVGHGNAIN-------------ELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149 (366)
T ss_dssp TT----------CEEEEECTTTCCEEEEEESCCSCEE-------------EEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred CC----------CEEEEEEchhceEeeeecCCCCcEE-------------EEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence 99 9999999999999999998877764 7899984567888888 9999999999887
Q ss_pred cccce---eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEE
Q 005315 342 LIDKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 418 (702)
Q Consensus 342 ~~~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 418 (702)
.+... ..+...|.+++|+|++++|++ ++.++.+++ |++.+.+....... .+.|+|++..+....
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~i--~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 216 (366)
T 3k26_A 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMS-----CGMDHSLKL--WRINSKRMMNAIKE------SYDYNPNKTNRPFIS 216 (366)
T ss_dssp EEEEECSTTSCSSCEEEEEECTTSSEEEE-----EETTSCEEE--EESCSHHHHHHHHH------HHTCCGGGCSSCCCC
T ss_pred EEEEecccccccCceeEEEECCCCCEEEE-----ecCCCCEEE--EECCCCccccccce------eEEecCCCCcccccc
Confidence 76554 456778999999999999998 666666555 55544432211110 123455554433221
Q ss_pred cccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccC--------
Q 005315 419 DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH-------- 490 (702)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~-------- 490 (702)
.... .........|...|.+++|+ +++|++++.++ .|++||+.+...
T Consensus 217 ~~~~--------------------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~ 271 (366)
T 3k26_A 217 QKIH--------------------FPDFSTRDIHRNYVDCVRWL--GDLILSKSCEN---AIVCWKPGKMEDDIDKIKPS 271 (366)
T ss_dssp EEEC--------------------CCSEEECSSCSSCCCEEEEE--TTEEEEECSSS---EEEEEEESSTTCCGGGCCTT
T ss_pred eeec--------------------cCccccccCCcceEEEEEEc--CCEEEEEecCC---EEEEEeCCCccccccccccC
Confidence 1100 00112344689999999998 78999999999 999999976432
Q ss_pred cCceEEEEEcCC--CceeEEEEccC--CCEEEEEeccCCCceEEEEECCCccee------eecc--cCceeeeEECCCCC
Q 005315 491 AGRVSKLTTLKG--KQANALFWSPS--GRFIVLAGLKGFNGQLEFYNVDELETM------ATAE--HFMATDVEWDPTGR 558 (702)
Q Consensus 491 ~~~~~~~~~~~~--~~v~~~~~spd--g~~l~~~~~~~~dg~v~i~d~~~~~~~------~~~~--~~~i~~~~~spdg~ 558 (702)
......+..+.. ..+++++|+|+ |++|++++. ||.|++||+.+++.. ...| ...|++++|+|+|+
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 348 (366)
T 3k26_A 272 ESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ---VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS 348 (366)
T ss_dssp CCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT---TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CcchheeccccccCCcEEEEEEcCCCCCcEEEEEec---CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC
Confidence 011234555543 36899999999 999999988 999999999976432 1233 58899999999999
Q ss_pred EEEEEEeecccccccEEEEEec
Q 005315 559 YVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 559 ~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+|++++. |+.|+||++.
T Consensus 349 ~l~s~~~-----dg~i~iwd~~ 365 (366)
T 3k26_A 349 ILIAVCD-----DASIWRWDRL 365 (366)
T ss_dssp EEEEEET-----TSEEEEEEC-
T ss_pred eEEEEeC-----CCEEEEEEec
Confidence 9999999 9999999974
No 50
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=9.2e-30 Score=265.72 Aligned_cols=296 Identities=13% Similarity=0.109 Sum_probs=200.0
Q ss_pred cccceEEECCCCcEEEEEeCC--------ceEEeecCcCcce-------ee--ee-cCC-CeeEEEecCCCCEEEEEcCC
Q 005315 204 WTESFVQWSPLGTYLATVHRQ--------GAAVWGGANTFNR-------LM--RY-AHP-QVKLIDFSPGEKYLVTYSSH 264 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~--------~i~iw~~~~~~~~-------~~--~~-~~~-~v~~i~fSpdg~~l~t~s~d 264 (702)
.+|+|++|+|||++||+|+.+ .|+||++...... .. .+ .|. .|.++++ +++.++++..+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECC
Confidence 579999999999999998753 2789988622211 11 12 122 3666655 56677776543
Q ss_pred CCCC-CcCCCccEEEEEEccCCcE-Ee---eccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe--c-CCeEEEEe
Q 005315 265 EPSN-PRDANRVVINIFDVRTGKV-MR---DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL--G-KNMISVYE 336 (702)
Q Consensus 265 ~~~~-~~~~~~~~i~vwd~~~g~~-~~---~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~--~-d~~i~v~d 336 (702)
.... .....++++++|++.++.. +. ......... .... -.+++||| ||+++|++ + |++|+|||
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~v~fSp-Dg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTN-------ADDY-TKLVYISR-EGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCC-------TTCC-EEEEEECT-TSSCEEEEESCSSCEEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCC-------cccC-EEEEEEcC-CCCEEEEEECCCCCEEEEeE
Confidence 1100 0011226799999866532 11 111110000 0000 01689999 99998654 3 89999999
Q ss_pred cCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEE
Q 005315 337 TESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 416 (702)
Q Consensus 337 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 416 (702)
+.++..+... .+...|.+++|+|+|++|++ ++.+. .. +| |..+|..+..
T Consensus 164 ~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s-----~s~~~-~~--~~----------------------~~~~~~~~~~ 212 (365)
T 4h5i_A 164 PSDLTEKFEI-ETRGEVKDLHFSTDGKVVAY-----ITGSS-LE--VI----------------------STVTGSCIAR 212 (365)
T ss_dssp TTTTEEEEEE-ECSSCCCEEEECTTSSEEEE-----ECSSC-EE--EE----------------------ETTTCCEEEE
T ss_pred CCCCcEEEEe-CCCCceEEEEEccCCceEEe-----cccee-EE--EE----------------------EeccCcceee
Confidence 9998876554 35567999999999999998 44332 22 22 2222222111
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCC-CeEEEEEeecccCcCceE
Q 005315 417 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR-PDISFYSMRTAQHAGRVS 495 (702)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~-~~v~i~d~~~~~~~~~~~ 495 (702)
.....|...|.+++|+|+|+++++++.++.. ..+++|++..... ...
T Consensus 213 ------------------------------~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~--~~~ 260 (365)
T 4h5i_A 213 ------------------------------KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT--SVL 260 (365)
T ss_dssp ------------------------------ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE--EEE
T ss_pred ------------------------------eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee--cce
Confidence 1123567889999999999999999887532 2477788764432 122
Q ss_pred EEEEcCC--CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee---cccCceeeeEECCCCCEEEEEEeecccc
Q 005315 496 KLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEM 570 (702)
Q Consensus 496 ~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~---~~~~~i~~~~~spdg~~l~t~s~~~~~~ 570 (702)
....+.+ ..|++++|||+|++||+++. |+.|+|||+.+++.+.+ .|...|++++|||||++||+++.
T Consensus 261 ~~~~~~~~~~~V~~~~~Spdg~~lasgs~---D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~----- 332 (365)
T 4h5i_A 261 RSKQVTNRFKGITSMDVDMKGELAVLASN---DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA----- 332 (365)
T ss_dssp EEEEEESSCSCEEEEEECTTSCEEEEEET---TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET-----
T ss_pred eeeeecCCCCCeEeEEECCCCCceEEEcC---CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC-----
Confidence 2334443 37999999999999999998 99999999999888764 57789999999999999999999
Q ss_pred cccEEEEEecc
Q 005315 571 ENGFNIWSFNG 581 (702)
Q Consensus 571 d~~v~iw~~~g 581 (702)
|++|+||++..
T Consensus 333 D~tvrvw~ip~ 343 (365)
T 4h5i_A 333 ANTIHIIKLPL 343 (365)
T ss_dssp TSEEEEEECCT
T ss_pred CCeEEEEEcCC
Confidence 99999999853
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-30 Score=275.72 Aligned_cols=326 Identities=15% Similarity=0.227 Sum_probs=240.3
Q ss_pred ccccccCCCCCceEEEE----------eCCceEEEecCCCCC--CCcccccCCCcccceEEECCCCcEEEEEeCCc-eEE
Q 005315 162 LQKWLTDEKARDQFVIR----------SGTDTEVLWNDARHL--KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAV 228 (702)
Q Consensus 162 ~~~~~~~~~~~~~~~~~----------~~~~~~~~w~~~~~~--~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~i 228 (702)
.....++|+++..+++. +.++.+.+|+..... ++... ..|...|++++|+|+|++||+++.++ |+|
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 33445567777666666 567788899984322 13333 35888999999999999999999998 889
Q ss_pred eecCcC----cceeeee-cCC-CeeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCc------EEee---cc
Q 005315 229 WGGANT----FNRLMRY-AHP-QVKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGK------VMRD---FK 292 (702)
Q Consensus 229 w~~~~~----~~~~~~~-~~~-~v~~i~fSpd-g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~------~~~~---~~ 292 (702)
|+.. . ...+..+ .|. .|.+++|+|+ +++|++++.+ +.|++||+.+++ .... +.
T Consensus 94 w~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 94 YSTN-EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN----------GEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp ECCS-STTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS----------SCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred eecc-cccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC----------CeEEEEECCCCcccccccccccccccc
Confidence 9998 4 3344444 344 5999999998 8999999999 999999998886 3222 23
Q ss_pred CCCcccccCCCCCCCCcccceEEEcCCC-CcEEEEec-CCeEEEEecCCcccccceeec------cCCeeEEEeCCCC-C
Q 005315 293 GSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFTLIDKKSLK------VENVMDFSWSPTD-P 363 (702)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~w~~~~~s~~d-g~~la~~~-d~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~sp~~-~ 363 (702)
.|...+. +++|+| + +.+|++++ ++.|++||+.+++.+.....+ ...|.+++|+|++ .
T Consensus 163 ~~~~~v~-------------~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 163 SSVDEVI-------------SLAWNQ-SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CSSCCCC-------------EEEECS-SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred CCCCCee-------------EEEeCC-CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 4444432 789999 8 78899888 999999999988776655554 5679999999997 5
Q ss_pred eEEEEeecCCCCCC-CcEEEEEecCCc-ceeeeee-ecccccceeEEcc-CCCEEEEEEcccccccccccccEEEEEEec
Q 005315 364 IISLFVPELGGGNQ-PARVSLVQIPSK-EELRQKN-LFSVSDCKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKE 439 (702)
Q Consensus 364 ~la~~~~~~~~~~~-~~~i~~~~~~~~-~~~~~~~-~~~~~~~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 439 (702)
+|++ ++.++ ...|.+|++... ..+.... .+......+.|+| ++.+|++++.++. +.+|++..
T Consensus 229 ~l~~-----~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~---------v~~wd~~~ 294 (416)
T 2pm9_A 229 RVAT-----ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT---------VLLWNPES 294 (416)
T ss_dssp EEEE-----EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE---------EEEECSSS
T ss_pred EEEE-----EECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC---------EEEeeCCC
Confidence 6776 44554 124455566554 3333333 3455667789999 9999999998877 88998775
Q ss_pred CCcceeEEEecCCCCceeEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCcCceEE-----------EEE--------
Q 005315 440 RDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSK-----------LTT-------- 499 (702)
Q Consensus 440 ~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~-----------~~~-------- 499 (702)
.. ....+.+|...|.+++|+|++ .+|++++.|+ .|++|++.+......... +..
T Consensus 295 ~~---~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 295 AE---QLSQFPARGNWCFKTKFAPEAPDLFACASFDN---KIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp CC---EEEEEECSSSCCCCEEECTTCTTEEEECCSSS---EEEEEESCCCCCSSCC----------------------CC
T ss_pred Cc---cceeecCCCCceEEEEECCCCCCEEEEEecCC---cEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence 42 234566889999999999999 8999999999 999999976542211100 000
Q ss_pred ------------cCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 500 ------------LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 500 ------------~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
....++..++|||+|++|++++. ||.|+||++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~---d~~v~~w~~~~ 414 (416)
T 2pm9_A 369 EKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD---GKGVSITNPKI 414 (416)
T ss_dssp SCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT---SSCBCCBCCCC
T ss_pred cccccccccCCccccCCccceEEeeCCeEEEEeCC---CCeEEEEEecc
Confidence 01235678999999999999987 99999999875
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.1e-29 Score=272.22 Aligned_cols=287 Identities=13% Similarity=0.161 Sum_probs=209.0
Q ss_pred cccCCCcccceEEECC-CCcEEEEEeCCc-eEEeecCcCcc--eeeee-cCC-CeeEEEecC-CCCEEEEEcCCCCCCCc
Q 005315 198 VYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFN--RLMRY-AHP-QVKLIDFSP-GEKYLVTYSSHEPSNPR 270 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~--~~~~~-~~~-~v~~i~fSp-dg~~l~t~s~d~~~~~~ 270 (702)
...+|...|+||+|+| ++++||+|+.|| |+|||+. +.. ....+ .|. .|.+|+|+| ++.+|++++.|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~-~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D------ 186 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG-IKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME------ 186 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSS-CCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS------
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECC-CCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC------
Confidence 3456788899999999 578999999999 8999987 443 33333 344 599999998 68999999999
Q ss_pred CCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeec
Q 005315 271 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 349 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~ 349 (702)
++|+|||+.++........+.... ...++.|+| ++++|++++ ++.|++||+.. +.+.....|
T Consensus 187 ----~~v~iwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h 249 (435)
T 4e54_B 187 ----GTTRLQDFKGNILRVFASSDTINI-----------WFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRMH 249 (435)
T ss_dssp ----SCEEEEETTSCEEEEEECCSSCSC-----------CCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBCC
T ss_pred ----CEEEEeeccCCceeEEeccCCCCc-----------cEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEecc
Confidence 999999986654433333222211 012689999 999999999 99999999874 444555677
Q ss_pred cCCeeEEEeCCCCC-eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccc
Q 005315 350 VENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 428 (702)
Q Consensus 350 ~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 428 (702)
...|.+++|+|++. +|++ ++.|+.++||.+ ...+..
T Consensus 250 ~~~v~~v~~~p~~~~~~~s-----~s~d~~v~iwd~--~~~~~~------------------------------------ 286 (435)
T 4e54_B 250 KKKVTHVALNPCCDWFLAT-----ASVDQTVKIWDL--RQVRGK------------------------------------ 286 (435)
T ss_dssp SSCEEEEEECTTCSSEEEE-----EETTSBCCEEET--TTCCSS------------------------------------
T ss_pred cceEEeeeecCCCceEEEE-----ecCcceeeEEec--cccccc------------------------------------
Confidence 88899999999986 4555 567777666532 211100
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC-----
Q 005315 429 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK----- 503 (702)
Q Consensus 429 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~----- 503 (702)
.......+|...|.+++|+|+|++|++++.|+ .|+||++.++.. ...+..+
T Consensus 287 ---------------~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~---~i~iwd~~~~~~------~~~~~~~~~~~~ 342 (435)
T 4e54_B 287 ---------------ASFLYSLPHRHPVNAACFSPDGARLLTTDQKS---EIRVYSASQWDC------PLGLIPHPHRHF 342 (435)
T ss_dssp ---------------SCCSBCCBCSSCEEECCBCTTSSEEEEEESSS---CEEEEESSSSSS------EEEECCCCCCCC
T ss_pred ---------------ceEEEeeeccccccceeECCCCCeeEEEcCCC---EEEEEECCCCcc------ceEEeccccccc
Confidence 00011236789999999999999999999999 999999976542 2222111
Q ss_pred ---ceeEEEEccCCCEEEEEeccC---------CCceEEEEECCCcceeee---cccCceeee-EECCCCCEEEEEEeec
Q 005315 504 ---QANALFWSPSGRFIVLAGLKG---------FNGQLEFYNVDELETMAT---AEHFMATDV-EWDPTGRYVATAVTSV 567 (702)
Q Consensus 504 ---~v~~~~~spdg~~l~~~~~~~---------~dg~v~i~d~~~~~~~~~---~~~~~i~~~-~~spdg~~l~t~s~~~ 567 (702)
.+....|+|++.+++++...+ .++.|++||..+++++.. .|...|.++ +|+|+|++|++++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~--- 419 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM--- 419 (435)
T ss_dssp SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC---
T ss_pred ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc---
Confidence 234567888888887765321 246799999999888765 455677776 6999999998764
Q ss_pred ccccccEEEEEecc
Q 005315 568 HEMENGFNIWSFNG 581 (702)
Q Consensus 568 ~~~d~~v~iw~~~g 581 (702)
|+.|+||++..
T Consensus 420 ---d~~i~iW~~~~ 430 (435)
T 4e54_B 420 ---GYHILIWSQQE 430 (435)
T ss_dssp ---SSEEEECCCC-
T ss_pred ---CCcEEEEECCc
Confidence 57899999873
No 53
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1.7e-29 Score=261.83 Aligned_cols=270 Identities=14% Similarity=0.189 Sum_probs=209.1
Q ss_pred CCCeeEEEe-----cC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-------cEEeeccCCCcccccCCCCCCCCc
Q 005315 243 HPQVKLIDF-----SP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-------KVMRDFKGSADEFAVGGTGGVAGV 309 (702)
Q Consensus 243 ~~~v~~i~f-----Sp-dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~ 309 (702)
...|.+++| +| ++++|++++.| ++|+|||+.++ .....+.+|...+.
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D----------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~---------- 80 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRD----------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS---------- 80 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETT----------SCEEEEEECSSCCSSBSEEEEEEECCCSSCEE----------
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCC----------CEEEEEECCcCCcccccccccchhccCCCceE----------
Confidence 345999999 77 99999999999 99999998643 45677888877764
Q ss_pred ccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC
Q 005315 310 SWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 388 (702)
Q Consensus 310 ~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 388 (702)
+++|+| ++.++++++ |++|++||+.+++.+.....|...|.+++|+|++++|++ ++.++.+++|... .
T Consensus 81 ---~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s-----~~~d~~i~~wd~~--~ 149 (343)
T 2xzm_R 81 ---DLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS-----AGAEREIKLWNIL--G 149 (343)
T ss_dssp ---EEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEE-----EETTSCEEEEESS--S
T ss_pred ---EEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEE-----EcCCCEEEEEecc--C
Confidence 799999 999999999 999999999999887777778888999999999999998 7777777665421 1
Q ss_pred cceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC---
Q 005315 389 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--- 465 (702)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--- 465 (702)
.... .. ....+|...|.+++|+|++
T Consensus 150 -----------------------~~~~--------------------~~---------~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 150 -----------------------ECKF--------------------SS---------AEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp -----------------------CEEE--------------------EC---------CTTTSCSSCEEEEEECCCCCSC
T ss_pred -----------------------Ccee--------------------ee---------ecccCCCceeeeeeeccccccc
Confidence 0000 00 0012567788888998876
Q ss_pred -------cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 466 -------HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 466 -------~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
.+|++++.|+ .|++||... .....+. ...+++++|+|+|++|++++. ||.|++||+.+
T Consensus 178 ~~~~~~~~~l~s~~~d~---~i~iwd~~~-------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~---dg~v~iwd~~~ 244 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDG---RLKVWNTNF-------QIRYTFKAHESNVNHLSISPNGKYIATGGK---DKKLLIWDILN 244 (343)
T ss_dssp SCCCSSCCEEEEEETTS---EEEEEETTT-------EEEEEEECCSSCEEEEEECTTSSEEEEEET---TCEEEEEESSC
T ss_pred cccCCCCCEEEEEcCCC---EEEEEcCCC-------ceeEEEcCccccceEEEECCCCCEEEEEcC---CCeEEEEECCC
Confidence 7899999999 999999421 1333443 447999999999999999998 99999999953
Q ss_pred -cceeee-cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccce-ee--e-------------eccccEeeEEEe
Q 005315 537 -LETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL-LY--R-------------TLKDHFFQFLWR 598 (702)
Q Consensus 537 -~~~~~~-~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~-l~--~-------------~~~~~i~~~~w~ 598 (702)
...... .+...|++++|+|++++|+++ . |+.+++|++.... .. . .+...+.+++|+
T Consensus 245 ~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 245 LTYPQREFDAGSTINQIAFNPKLQWVAVG-T-----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp CSSCSEEEECSSCEEEEEECSSSCEEEEE-E-----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred CcccceeecCCCcEEEEEECCCCCEEEEE-C-----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 333322 245679999999999987654 5 6899999986432 11 1 234578999999
Q ss_pred eCCCCCCChhhHHHHH
Q 005315 599 PRPPSFLTPEKEEEIA 614 (702)
Q Consensus 599 p~~~~l~s~~~d~~i~ 614 (702)
|+++.|++++.|+.|+
T Consensus 319 p~g~~l~sg~~Dg~v~ 334 (343)
T 2xzm_R 319 ALGKKLFAGFTDGVIR 334 (343)
T ss_dssp SSSCCEEEEETTSEEE
T ss_pred CCCCeEEEecCCceEE
Confidence 9999999999887664
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-30 Score=278.47 Aligned_cols=312 Identities=8% Similarity=-0.016 Sum_probs=206.1
Q ss_pred CCCCcEEEEEeCCc-eEEeecCcCccee----eee-cC-CCeeEEEecCC------CCEEEEEcCCCCCCCcCCCccEEE
Q 005315 212 SPLGTYLATVHRQG-AAVWGGANTFNRL----MRY-AH-PQVKLIDFSPG------EKYLVTYSSHEPSNPRDANRVVIN 278 (702)
Q Consensus 212 Spdg~~lat~~~~~-i~iw~~~~~~~~~----~~~-~~-~~v~~i~fSpd------g~~l~t~s~d~~~~~~~~~~~~i~ 278 (702)
+|++++||+++.++ |+||+.. +.+.. ..+ +| ..|.+++|+|+ +.+||+++.| ++|+
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~-~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D----------gtvr 238 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMN-TSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE----------GTIN 238 (524)
T ss_dssp ------------CEEEEEEEEE-TTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT----------SCEE
T ss_pred chhhhhhccCCCCceEEEEEcc-CCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC----------CeEE
Confidence 44445555566777 7899987 44421 223 33 45999999997 5799999999 9999
Q ss_pred EEEccCCcEE-----------eeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccc-ccc
Q 005315 279 IFDVRTGKVM-----------RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL-IDK 345 (702)
Q Consensus 279 vwd~~~g~~~-----------~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~-~~~ 345 (702)
|||+.++... ..+.+|...+. +++|++ ++ +|++++ ||+|++||+.++.. ...
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~-------------sv~~s~-~~-~lasgs~DgtV~lWD~~~~~~~~~~ 303 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLIT-------------TFDFLS-PT-TVVCGFKNGFVAEFDLTDPEVPSFY 303 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEE-------------EEEESS-SS-EEEEEETTSEEEEEETTBCSSCSEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEE-------------EEEecC-CC-eEEEEeCCCEEEEEECCCCCCceEE
Confidence 9999776421 24555554442 789998 76 678877 99999999987643 333
Q ss_pred eeeccCCeeEE--EeCCCC-CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec-c-cccceeEEccCCCEEEEEEcc
Q 005315 346 KSLKVENVMDF--SWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF-S-VSDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 346 ~~~~~~~v~~~--~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~s~~g~~l~~~~~~ 420 (702)
...|...|.++ .|+|++ .+|++ ++.|+.++||. +.+.+.+.....+ . .....++|+|+++.+++++.+
T Consensus 304 ~~~H~~~V~sv~~~~s~~g~~~laS-----~S~D~tvklWD--~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d 376 (524)
T 2j04_B 304 DQVHDSYILSVSTAYSDFEDTVVST-----VAVDGYFYIFN--PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA 376 (524)
T ss_dssp EECSSSCEEEEEEECCTTSCCEEEE-----EETTSEEEEEC--GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS
T ss_pred eecccccEEEEEEEcCCCCCeEEEE-----eccCCeEEEEE--CCCCCcccccccccccCcccceEeCCCcCeEEEeCCC
Confidence 45677889999 678888 88888 77887766654 4443322221111 1 224567899999999988887
Q ss_pred cccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE-
Q 005315 421 YTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT- 499 (702)
Q Consensus 421 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~- 499 (702)
.+ +++|+++..... ..+.+|.+.|.+++|||+|++|++++.|+ +|++|++..+.... ......
T Consensus 377 ~t---------v~lwd~~~~~~~---~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg---tv~lwd~~~~~~~~-~~~~~~~ 440 (524)
T 2j04_B 377 SS---------LRAVPSRAAFAV---HPLVSRETTITAIGVSRLHPMVLAGSADG---SLIITNAARRLLHG-IKNSSAT 440 (524)
T ss_dssp SE---------EEEEETTCTTCC---EEEEECSSCEEEEECCSSCCBCEEEETTT---EEECCBSCSSTTTC-C------
T ss_pred Cc---------EEEEECcccccc---eeeecCCCceEEEEeCCCCCeEEEEECCC---EEEEEechHhhccc-cccCccc
Confidence 66 789988764332 34568999999999999999999999999 99999985432110 000000
Q ss_pred cCCCceeEEEEccCCCEEEEEeccCCCceEEEEECC-Ccceee--ecccCceeeeEECCCCC---EEEEEEeeccccccc
Q 005315 500 LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD-ELETMA--TAEHFMATDVEWDPTGR---YVATAVTSVHEMENG 573 (702)
Q Consensus 500 ~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~-~~~~~~--~~~~~~i~~~~~spdg~---~l~t~s~~~~~~d~~ 573 (702)
.....+..++|||+|+.+.+. +.+.+|+.. ++..+. ..|...|.+++|+|++. +||+|+. ++.
T Consensus 441 ~~~~~v~~v~~sp~g~~~~~~------~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~-----~g~ 509 (524)
T 2j04_B 441 QKSLRLWKWDYSIKDDKYRID------SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS-----AGL 509 (524)
T ss_dssp CCCCEEEECBCCSSSCEEEEC------CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT-----TSE
T ss_pred eeeeEEEEeccCCCCCeEEcc------CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc-----Cce
Confidence 011146789999999855331 223344332 233333 35678999999999964 8999988 999
Q ss_pred EEEEEeccce
Q 005315 574 FNIWSFNGKL 583 (702)
Q Consensus 574 v~iw~~~g~~ 583 (702)
|+||++.+..
T Consensus 510 vrlw~l~~~~ 519 (524)
T 2j04_B 510 LTLEYLSLEH 519 (524)
T ss_dssp EEEEECSCC-
T ss_pred EEEEEccccc
Confidence 9999998764
No 55
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1e-28 Score=260.84 Aligned_cols=286 Identities=13% Similarity=0.166 Sum_probs=213.1
Q ss_pred ccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCC------------------cccceEEECCCCcEEEEEeC
Q 005315 162 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSY------------------WTESFVQWSPLGTYLATVHR 223 (702)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~------------------~~v~~v~~Spdg~~lat~~~ 223 (702)
+.+..+.|+|+ +++.+.++...+|+. ..+.....+..|. ..|++++|||+|++||+++.
T Consensus 67 V~~v~fspdg~--~la~g~~~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 67 VCCVKFSNDGE--YLATGCNKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp CCEEEECTTSS--EEEEECBSCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCC--EEEEEcCCcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 44555677776 344455677789987 4555554444432 24899999999999999999
Q ss_pred Cc-eEEeecCcCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCccccc
Q 005315 224 QG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 300 (702)
Q Consensus 224 ~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~ 300 (702)
++ |+|||.. +.+.+..+. |. .|.+++|+|++++|++++.| ++|++||+.++++...+..+....
T Consensus 144 d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d----------~~v~iwd~~~~~~~~~~~~~~~v~-- 210 (393)
T 1erj_A 144 DRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD----------RTVRIWDLRTGQCSLTLSIEDGVT-- 210 (393)
T ss_dssp TSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----------SEEEEEETTTTEEEEEEECSSCEE--
T ss_pred CCeEEEEECC-CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCC----------CcEEEEECCCCeeEEEEEcCCCcE--
Confidence 99 8899999 777666663 44 59999999999999999999 999999999999888776554433
Q ss_pred CCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccce-------eeccCCeeEEEeCCCCCeEEEEeecC
Q 005315 301 GGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-------SLKVENVMDFSWSPTDPIISLFVPEL 372 (702)
Q Consensus 301 ~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~sp~~~~la~~~~~~ 372 (702)
+++|+|.++++|++++ |+.|++||+.++..+... ..|...|.+++|+|++++|++
T Consensus 211 ------------~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s----- 273 (393)
T 1erj_A 211 ------------TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS----- 273 (393)
T ss_dssp ------------EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE-----
T ss_pred ------------EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE-----
Confidence 6889874678999998 999999999987765433 245667999999999999998
Q ss_pred CCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC
Q 005315 373 GGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK 452 (702)
Q Consensus 373 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h 452 (702)
++.++.+++|.+.. ........ .+. .......+.+|
T Consensus 274 ~s~d~~v~~wd~~~--~~~~~~~~-----------~~~-------------------------------~~~~~~~~~~h 309 (393)
T 1erj_A 274 GSLDRSVKLWNLQN--ANNKSDSK-----------TPN-------------------------------SGTCEVTYIGH 309 (393)
T ss_dssp EETTSEEEEEEC-----------------------------------------------------------CEEEEEECC
T ss_pred EeCCCEEEEEECCC--CCCccccc-----------CCC-------------------------------CCcceEEEecc
Confidence 66777766655432 11100000 000 00011334578
Q ss_pred CCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEcc------CCCEEEEEeccC
Q 005315 453 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSP------SGRFIVLAGLKG 524 (702)
Q Consensus 453 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~sp------dg~~l~~~~~~~ 524 (702)
...|.+++|+|++.+|++++.|+ .|++||+.++. .+..+.+| .|.+++|+| ++++|++++.
T Consensus 310 ~~~v~~~~~~~~~~~l~sgs~D~---~v~iwd~~~~~------~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~-- 378 (393)
T 1erj_A 310 KDFVLSVATTQNDEYILSGSKDR---GVLFWDKKSGN------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG-- 378 (393)
T ss_dssp SSCEEEEEECGGGCEEEEEETTS---EEEEEETTTCC------EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET--
T ss_pred cCcEEEEEECCCCCEEEEEeCCC---eEEEEECCCCe------EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC--
Confidence 99999999999999999999999 99999997654 45555544 689999886 6889999998
Q ss_pred CCceEEEEECCC
Q 005315 525 FNGQLEFYNVDE 536 (702)
Q Consensus 525 ~dg~v~i~d~~~ 536 (702)
||.|++|++..
T Consensus 379 -Dg~i~iW~~~~ 389 (393)
T 1erj_A 379 -DCKARIWKYKK 389 (393)
T ss_dssp -TSEEEEEEEEE
T ss_pred -CCcEEECcccc
Confidence 99999999864
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1.4e-28 Score=262.53 Aligned_cols=320 Identities=13% Similarity=0.132 Sum_probs=240.6
Q ss_pred cccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-c
Q 005315 165 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-A 242 (702)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~ 242 (702)
..++|+++. ++....++...+|+. ........+..| ..+....|+|+|++||+++.++ |.||+.. +......+ .
T Consensus 62 ~~~s~~g~~-l~~~~~d~~v~i~d~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~ 137 (420)
T 3vl1_A 62 NTFEKVGSH-LYKARLDGHDFLFNT-IIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSN-FNLQREIDQA 137 (420)
T ss_dssp CEEEEEETT-EEEEEETTEEEEEEC-CSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTT-SCEEEEETTS
T ss_pred eeeeecCCe-EEEEEcCCcEEEEEe-cccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCC-Ccceeeeccc
Confidence 445566654 455666788889998 455555666666 4556668999999999999998 8899999 77776665 4
Q ss_pred CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 243 HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 243 ~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
|. .|.+++|+|++++|++++.+ +.|++||+.+++.+..+.+|...+. +++|+| ++
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d----------~~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~ 193 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQD----------MQLKIWSVKDGSNPRTLIGHRATVT-------------DIAIID-RG 193 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETT----------SEEEEEETTTCCCCEEEECCSSCEE-------------EEEEET-TT
T ss_pred ccCccEEEEECCCCCEEEEEeCC----------CeEEEEeCCCCcCceEEcCCCCcEE-------------EEEEcC-CC
Confidence 54 49999999999999999999 9999999999999999998887764 799999 99
Q ss_pred cEEEEec-CCeEEEEecCCcccccceeec------------------------cCCeeEEEeCCCCCeEEEEeecCCCCC
Q 005315 322 KYFAKLG-KNMISVYETESFTLIDKKSLK------------------------VENVMDFSWSPTDPIISLFVPELGGGN 376 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~~~~~~~~------------------------~~~v~~~~~sp~~~~la~~~~~~~~~~ 376 (702)
++|++++ |+.|++||+.+++.+.....+ ...+.+++|+|++++|++ ++.+
T Consensus 194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~~~d 268 (420)
T 3vl1_A 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA-----GHVS 268 (420)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE-----EETT
T ss_pred CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE-----EcCC
Confidence 9999998 999999999988766544321 234556777899999998 5566
Q ss_pred CCcEEEEEecCCcceeeeeee-cccccceeEEccCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC
Q 005315 377 QPARVSLVQIPSKEELRQKNL-FSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND 454 (702)
Q Consensus 377 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~ 454 (702)
+. |.+|++.+.+.+..... +......+.|+|+|. +|++++.++. +.+|++.....+...+.. .|..
T Consensus 269 g~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~---------i~vwd~~~~~~~~~~~~~-~~~~ 336 (420)
T 3vl1_A 269 GV--ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM---------LAQWDLRSPECPVGEFLI-NEGT 336 (420)
T ss_dssp SC--EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE---------EEEEETTCTTSCSEEEEE-STTS
T ss_pred Ce--EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe---------EEEEEcCCCcCchhhhhc-cCCC
Confidence 55 55566666554443322 345566789999999 9999998877 899999876554433332 3677
Q ss_pred ceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCce-----EEEEEcCCCceeEEEEccCCC---EEEEEeccCCC
Q 005315 455 KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV-----SKLTTLKGKQANALFWSPSGR---FIVLAGLKGFN 526 (702)
Q Consensus 455 ~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~-----~~~~~~~~~~v~~~~~spdg~---~l~~~~~~~~d 526 (702)
.|.++. .|++++|++++.|+ .|++|++......... ..........+.+++|+|+|+ .+++++. +
T Consensus 337 ~v~~~~-~~~~~~l~s~~~d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~---~ 409 (420)
T 3vl1_A 337 PINNVY-FAAGALFVSSGFDT---SIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK---N 409 (420)
T ss_dssp CEEEEE-EETTEEEEEETTTE---EEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET---T
T ss_pred CceEEE-eCCCCEEEEecCCc---cEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC---C
Confidence 788774 56888999999999 9999999763221100 111122234789999999999 6666666 8
Q ss_pred ceEEEEECCC
Q 005315 527 GQLEFYNVDE 536 (702)
Q Consensus 527 g~v~i~d~~~ 536 (702)
|.+.+|++++
T Consensus 410 g~~~~~~~~~ 419 (420)
T 3vl1_A 410 NFCALYNLSN 419 (420)
T ss_dssp TEEEEEESCC
T ss_pred ceEEEEeccC
Confidence 9999999864
No 57
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.5e-30 Score=268.62 Aligned_cols=298 Identities=14% Similarity=0.176 Sum_probs=208.7
Q ss_pred ccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCc--ceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005315 199 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF--NRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 199 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~--~~~~~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~ 273 (702)
+..+...|++++|||+|++||+++.++ |+||+.. +. ..+..+. |. .|.+++|+|++++|++++.|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d--------- 76 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQD-GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD--------- 76 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEE-TTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT---------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEcc-CCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC---------
Confidence 344667899999999999999999988 8899998 55 5555553 44 59999999999999999999
Q ss_pred ccEEEEEEccCCc---EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccc---ccce
Q 005315 274 RVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL---IDKK 346 (702)
Q Consensus 274 ~~~i~vwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~---~~~~ 346 (702)
+.|+|||+.+++ ....+..|...+. +++|+| ++++|++++ |+.|++|++.++.. ....
T Consensus 77 -~~v~vwd~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 141 (377)
T 3dwl_C 77 -RNAYVYEKRPDGTWKQTLVLLRLNRAAT-------------FVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHL 141 (377)
T ss_dssp -SSEEEC------CCCCEEECCCCSSCEE-------------EEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEE
T ss_pred -CeEEEEEcCCCCceeeeeEecccCCceE-------------EEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEe
Confidence 999999998887 6667777776653 799999 999999998 99999999998763 3333
Q ss_pred ee-ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccc
Q 005315 347 SL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 425 (702)
Q Consensus 347 ~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 425 (702)
.. |...|.+++|+|++++|++ ++.++.+++|.+.......... ..+.+..+-.
T Consensus 142 ~~~h~~~v~~~~~~~~~~~l~~-----~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~~~~~--------- 195 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNVLLAA-----GCADRKAYVLSAYVRDVDAKPE------------ASVWGSRLPF--------- 195 (377)
T ss_dssp CSSCCSCEEEEEECTTSSEEEE-----EESSSCEEEEEECCSSCC-CCC------------SCSSCSCCCE---------
T ss_pred ecccCCCeEEEEEcCCCCEEEE-----EeCCCEEEEEEEEecccCCCcc------------ccccccccch---------
Confidence 34 6778999999999999998 7777777776654322110000 0011100000
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CC
Q 005315 426 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GK 503 (702)
Q Consensus 426 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~ 503 (702)
......+ +|...|.+++|+|+|++|++++.|+ .|++||+.++... ...+..+. ..
T Consensus 196 -----------------~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~--~~~~~~~~~~~~ 252 (377)
T 3dwl_C 196 -----------------NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS---SVTIAYPSAPEQP--PRALITVKLSQL 252 (377)
T ss_dssp -----------------EEEEECC-CCSSSEEEEEECTTSSCEEEEETTT---EEC-CEECSTTSC--EEECCCEECSSS
T ss_pred -----------------hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC---cEEEEECCCCCCc--ceeeEeecCCCC
Confidence 0011223 7789999999999999999999999 9999999876531 11133333 34
Q ss_pred ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcc---------------------------------------e-----
Q 005315 504 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE---------------------------------------T----- 539 (702)
Q Consensus 504 ~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~---------------------------------------~----- 539 (702)
.+.+++|+|+|++|++++. ++ +.+|+..... .
T Consensus 253 ~v~~~~~s~~~~~l~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (377)
T 3dwl_C 253 PLRSLLWANESAIVAAGYN---YS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMD 328 (377)
T ss_dssp CEEEEEEEETTEEEEEESS---SS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------------
T ss_pred ceEEEEEcCCCCEEEEEcC---Cc-EEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchh
Confidence 7899999999999998874 44 4477654111 0
Q ss_pred ----------eeecccCceeeeEECCCC-C---EEEEEEeecccccccEEEEEe
Q 005315 540 ----------MATAEHFMATDVEWDPTG-R---YVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 540 ----------~~~~~~~~i~~~~~spdg-~---~l~t~s~~~~~~d~~v~iw~~ 579 (702)
+...|...|+++++.+.+ . .|+|++. |+.|+||++
T Consensus 329 ~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~-----Dg~i~iWdl 377 (377)
T 3dwl_C 329 LKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGT-----DGRVVLWTL 377 (377)
T ss_dssp --------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEET-----TSEEEEECC
T ss_pred hccccccccccCccccceeEEEeccCCCCCceEEEEeecC-----CCcEEEecC
Confidence 001267889999876544 3 6999999 999999985
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=256.23 Aligned_cols=294 Identities=13% Similarity=0.197 Sum_probs=220.2
Q ss_pred cccCCCcccceEEECCCCcEEE-EEeC---Cc-eEEeecCcCcce--eeeecCC-CeeEEEecCC---CCEEEEEcCCCC
Q 005315 198 VYKRSYWTESFVQWSPLGTYLA-TVHR---QG-AAVWGGANTFNR--LMRYAHP-QVKLIDFSPG---EKYLVTYSSHEP 266 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Spdg~~la-t~~~---~~-i~iw~~~~~~~~--~~~~~~~-~v~~i~fSpd---g~~l~t~s~d~~ 266 (702)
.+.+|...|++++|+|+|..|+ +++. ++ |.||+.. +... ...+.|. .|.+++|+|+ |++|++++.+
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-- 89 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-HGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG-- 89 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEEC-SSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT--
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCC-CCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC--
Confidence 4567999999999999996554 5554 66 8899998 5544 3334454 5999999999 7999999999
Q ss_pred CCCcCCCccEEEEEEccCCc-EEeeccCCCcccccCCCCCCCCcccceE------EEcCCCCcEEEEec-CCeEEEEecC
Q 005315 267 SNPRDANRVVINIFDVRTGK-VMRDFKGSADEFAVGGTGGVAGVSWPVF------RWGGGKDKYFAKLG-KNMISVYETE 338 (702)
Q Consensus 267 ~~~~~~~~~~i~vwd~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~------~~s~~dg~~la~~~-d~~i~v~d~~ 338 (702)
+.|++||+.+++ .+..+.+|...+. ++ +|+| ++++|++++ |+.|++|++.
T Consensus 90 --------g~i~iwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~ 147 (357)
T 3i2n_A 90 --------GNLHIWNLEAPEMPVYSVKGHKEIIN-------------AIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPR 147 (357)
T ss_dssp --------SCEEEECTTSCSSCSEEECCCSSCEE-------------EEEEESGGGCC--CCCEEEEEETTSCEEEECTT
T ss_pred --------CeEEEEeCCCCCccEEEEEecccceE-------------EEeeccccccCC-CccEEEEEeCCCeEEEEeCC
Confidence 999999999988 8888888877653 44 5689 999999999 9999999999
Q ss_pred Ccc-cccceeeccC----CeeEEE----eCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEcc
Q 005315 339 SFT-LIDKKSLKVE----NVMDFS----WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 409 (702)
Q Consensus 339 ~~~-~~~~~~~~~~----~v~~~~----~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 409 (702)
++. .+.....+.. .+.+++ |+|++++|++ ++.++ .|.+|++.+.+.... ..+......+.|+|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-----~~~d~--~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 148 QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA-----GYDNG--DIKLFDLRNMALRWE-TNIKNGVCSLEFDR 219 (357)
T ss_dssp SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE-----EETTS--EEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE-----EccCC--eEEEEECccCceeee-cCCCCceEEEEcCC
Confidence 876 4433333222 577887 7899999998 54554 566667766654333 22445566789999
Q ss_pred ---CCCEEEEEEcccccccccccccEEEEEEecCCcc--eeEEEecCCCCceeEEEEeeCCc-EEEEEEcCCCCCeEEEE
Q 005315 410 ---SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP--IEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFY 483 (702)
Q Consensus 410 ---~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~ 483 (702)
++.+|++++.++. +.+|++...... .....+.+|...|.+++|+|++. +|++++.|+ .|++|
T Consensus 220 ~~~~~~~l~~~~~dg~---------i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw 287 (357)
T 3i2n_A 220 KDISMNKLVATSLEGK---------FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG---GLHLW 287 (357)
T ss_dssp SSSSCCEEEEEESTTE---------EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS---EEEEE
T ss_pred CCCCCCEEEEECCCCe---------EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC---cEEEe
Confidence 9999999988876 889998763221 12224458999999999999998 799999999 99999
Q ss_pred EeecccCcC-------------ceEEEEEcCC--CceeEEEEccCCCEEE-EEeccCCCceEEEEECCCcce
Q 005315 484 SMRTAQHAG-------------RVSKLTTLKG--KQANALFWSPSGRFIV-LAGLKGFNGQLEFYNVDELET 539 (702)
Q Consensus 484 d~~~~~~~~-------------~~~~~~~~~~--~~v~~~~~spdg~~l~-~~~~~~~dg~v~i~d~~~~~~ 539 (702)
+++.+.... ....+..+.. ..|++++|+|+|++|+ +++. ||.|++||+.+.+.
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~---d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF---DQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET---TSEEEEEEECC---
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC---CCcEEEEECCCccc
Confidence 998643211 1234555544 4799999999999998 6887 99999999986654
No 59
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=6.6e-29 Score=253.68 Aligned_cols=268 Identities=16% Similarity=0.302 Sum_probs=214.4
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
..|.+++|+|+|++|++++.+ +.|+||++.+++....+.+|...+. +++|+| ++++
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~d----------g~i~iw~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~ 79 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSAD----------KLIKIWGAYDGKFEKTISGHKLGIS-------------DVAWSS-DSNL 79 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETT----------SCEEEEETTTCCEEEEECCCSSCEE-------------EEEECT-TSSE
T ss_pred CcEEEEEECCCCCEEEEeeCC----------CeEEEEeCCCcccchhhccCCCceE-------------EEEEcC-CCCE
Confidence 459999999999999999999 9999999999999999998877664 799999 9999
Q ss_pred EEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccccc
Q 005315 324 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 402 (702)
Q Consensus 324 la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 402 (702)
|++++ |+.|++|++.+++.+.....|...|.+++|+|++++|++ ++.++.+++| ++.+.+.
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-----~~~d~~i~iw--d~~~~~~----------- 141 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-----GSFDESVRIW--DVKTGKC----------- 141 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE-----EETTSCEEEE--ETTTCCE-----------
T ss_pred EEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE-----EeCCCcEEEE--ECCCCEE-----------
Confidence 99998 999999999998877777677778999999999998888 6666665543 3322110
Q ss_pred ceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEE
Q 005315 403 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 482 (702)
Q Consensus 403 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 482 (702)
...+..|..+|.+++|+|++++|++++.|+ .|++
T Consensus 142 -------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~ 175 (312)
T 4ery_A 142 -------------------------------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG---LCRI 175 (312)
T ss_dssp -------------------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEE
T ss_pred -------------------------------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCC---cEEE
Confidence 122346788999999999999999999999 9999
Q ss_pred EEeecccCcCceEEEEEcC---CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCce--eeeEE-C
Q 005315 483 YSMRTAQHAGRVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMA--TDVEW-D 554 (702)
Q Consensus 483 ~d~~~~~~~~~~~~~~~~~---~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i--~~~~~-s 554 (702)
||++++. .+..+. ...+..++|+|+|++|++++. ||.|++||+.+++.+.. .+.... ....+ .
T Consensus 176 wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 176 WDTASGQ------CLKTLIDDDNPPVSFVKFSPNGKYILAATL---DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp EETTTCC------EEEEECCSSCCCEEEEEECTTSSEEEEEET---TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred EECCCCc------eeeEEeccCCCceEEEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 9997654 344332 346899999999999999998 99999999998887654 233222 22334 4
Q ss_pred CCCCEEEEEEeecccccccEEEEEeccc-eeeee--ccccEeeEEEeeCCCCCCChh--hHHHH
Q 005315 555 PTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRT--LKDHFFQFLWRPRPPSFLTPE--KEEEI 613 (702)
Q Consensus 555 pdg~~l~t~s~~~~~~d~~v~iw~~~g~-~l~~~--~~~~i~~~~w~p~~~~l~s~~--~d~~i 613 (702)
+++++|++++. |+.|++|++... .+... |.+.+.+++|+|+++.+++++ .|+.|
T Consensus 247 ~~~~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i 305 (312)
T 4ery_A 247 TGGKWIVSGSE-----DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305 (312)
T ss_dssp SSSCEEEECCT-----TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCE
T ss_pred CCCcEEEEECC-----CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccE
Confidence 67889999999 999999998754 44333 668899999999999999875 45444
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=8.2e-29 Score=262.74 Aligned_cols=314 Identities=11% Similarity=0.098 Sum_probs=225.5
Q ss_pred EEecCCCCCCCcccccCCCcccceEEECC-CCcEEEEEeCCc-eEEeecCcCcceeeeec--------------CC-Cee
Q 005315 185 VLWNDARHLKPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRYA--------------HP-QVK 247 (702)
Q Consensus 185 ~~w~~~~~~~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~~--------------~~-~v~ 247 (702)
.+|+. ...+....+.+|...|++++|+| +|++||+++.++ |+||+.. +......+. |. .|.
T Consensus 26 ~v~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 103 (408)
T 4a11_B 26 RVLGL-ELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYSVE 103 (408)
T ss_dssp HHHTE-EECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECC-CCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred eeecc-ccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECC-CCcccceEeccccccccccccccCCCcEE
Confidence 35665 34556667788999999999999 999999999999 8899998 555444331 44 499
Q ss_pred EEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc---E
Q 005315 248 LIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK---Y 323 (702)
Q Consensus 248 ~i~fSp-dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~---~ 323 (702)
+++|+| ++.+|++++.+ +.|++||+.+++.+..+....... ++.|++ .+. +
T Consensus 104 ~~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~--------------~~~~~~-~~~~~~~ 158 (408)
T 4a11_B 104 TVQWYPHDTGMFTSSSFD----------KTLKVWDTNTLQTADVFNFEETVY--------------SHHMSP-VSTKHCL 158 (408)
T ss_dssp EEEECTTCTTCEEEEETT----------SEEEEEETTTTEEEEEEECSSCEE--------------EEEECS-SCSSCCE
T ss_pred EEEEccCCCcEEEEEeCC----------CeEEEeeCCCCccceeccCCCcee--------------eeEeec-CCCCCcE
Confidence 999999 78899999999 999999999999888887544332 677777 544 8
Q ss_pred EEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCe-EEEEeecCCCCCCCcEEEEEecCCcc-eeeeeeeccc
Q 005315 324 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSV 400 (702)
Q Consensus 324 la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~ 400 (702)
+++++ ++.|.+|++.++..+.....|...|.+++|+|+++. +++ ++.++.+++ |++.... .+.....
T Consensus 159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~-----~~~dg~i~i--~d~~~~~~~~~~~~~--- 228 (408)
T 4a11_B 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILAT-----ASADSRVKL--WDVRRASGCLITLDQ--- 228 (408)
T ss_dssp EEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEE-----EETTSCEEE--EETTCSSCCSEECCT---
T ss_pred EEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEE-----EcCCCcEEE--EECCCCCcccccccc---
Confidence 88888 999999999998887777678888999999999985 666 556666554 4443322 1110000
Q ss_pred ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeE
Q 005315 401 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 480 (702)
Q Consensus 401 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 480 (702)
..+.. .........+|...|.+++|+|++++|++++.|+ .|
T Consensus 229 --------~~~~~----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i 269 (408)
T 4a11_B 229 --------HNGKK----------------------------SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN---RM 269 (408)
T ss_dssp --------TTTCS----------------------------CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS---CE
T ss_pred --------ccccc----------------------------ceeeccccccccCceeEEEEcCCCCEEEEecCCC---eE
Confidence 00000 0000011236789999999999999999999999 99
Q ss_pred EEEEeecccCcCceEE-EEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCC
Q 005315 481 SFYSMRTAQHAGRVSK-LTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTG 557 (702)
Q Consensus 481 ~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg 557 (702)
++|++.++........ .................+..+++++. ++.|++||+.+++.+.. .|...|++++|+|+|
T Consensus 270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY---GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF 346 (408)
T ss_dssp EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE---TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT
T ss_pred EEEECCCCccceeccccccccccccceeEEecCCCceEEEEec---CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC
Confidence 9999976542100000 00000111222222233445555565 89999999999888765 566899999999999
Q ss_pred CEEEEEEeecccccccEEEEEeccc
Q 005315 558 RYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 558 ~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
++|++++. |+.+++|++...
T Consensus 347 ~~l~s~~~-----dg~i~iw~~~~~ 366 (408)
T 4a11_B 347 QELYSGSR-----DCNILAWVPSLY 366 (408)
T ss_dssp TEEEEEET-----TSCEEEEEECC-
T ss_pred CEEEEECC-----CCeEEEEeCCCC
Confidence 99999999 999999999854
No 61
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.6e-28 Score=260.41 Aligned_cols=278 Identities=15% Similarity=0.245 Sum_probs=214.3
Q ss_pred cccceEEECCCCcEEEEEeCCceEEeecCcCcceeeee--c-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005315 204 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY--A-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 279 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~--~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v 279 (702)
...+.|+||+++ +||+|....|+|||.. +++.+..+ + |. .|.+++|||+|++||+|+.| +.|+|
T Consensus 106 ~y~~~l~wS~~n-~lAvgld~tV~lWd~~-tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D----------g~v~i 173 (420)
T 4gga_A 106 YYLNLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS----------AEVQL 173 (420)
T ss_dssp TTCBCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT----------SCEEE
T ss_pred ccceeEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC----------CeEEE
Confidence 457889999865 8888886669999999 77765544 2 33 39999999999999999999 99999
Q ss_pred EEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc-cccceeeccCCeeEEE
Q 005315 280 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDFS 357 (702)
Q Consensus 280 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~ 357 (702)
||+.+++.++.+.+|...+ .+++. ++.+|++++ ++.+.+|+..... .+.....|...+..+.
T Consensus 174 Wd~~~~~~~~~~~~h~~~v---------------~~~s~-~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 174 WDVQQQKRLRNMTSHSARV---------------GSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp EETTTTEEEEEECCCSSCE---------------EEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEcCCCcEEEEEeCCCCce---------------EEEee-CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 9999999999999987765 34455 678999998 9999999987643 3334456777788999
Q ss_pred eCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEE
Q 005315 358 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 437 (702)
Q Consensus 358 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 437 (702)
|+|++.++++ ++.++.+++|........
T Consensus 238 ~~~~g~~l~s-----~~~D~~v~i~~~~~~~~~----------------------------------------------- 265 (420)
T 4gga_A 238 WAPDGRHLAS-----GGNDNLVNVWPSAPGEGG----------------------------------------------- 265 (420)
T ss_dssp ECTTSSEEEE-----EETTSCEEEEESSCCSSC-----------------------------------------------
T ss_pred ecCCCCeeee-----eeccccceEEeecccccc-----------------------------------------------
Confidence 9999999888 666666655432211000
Q ss_pred ecCCcceeEEEecCCCCceeEEEEeeCCc-EEEEEE--cCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccC
Q 005315 438 KERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIH--GDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPS 513 (702)
Q Consensus 438 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~--~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spd 513 (702)
.........|...|.+++|+|.+. .+++++ .|+ .|+|||+.++. .+..+. ...+.++.|+|+
T Consensus 266 -----~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~---~I~iwd~~t~~------~~~~~~~~~~v~~~~~~~~ 331 (420)
T 4gga_A 266 -----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR---HIRIWNVCSGA------CLSAVDAHSQVCSILWSPH 331 (420)
T ss_dssp -----SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC---EEEEEETTTTE------EEEEEECSSCEEEEEEETT
T ss_pred -----ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC---EEEEEeCCccc------cceeeccccceeeeeecCC
Confidence 000012336688999999999665 445544 366 99999997654 444444 447899999999
Q ss_pred CCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 514 GRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 514 g~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
++.+++++. ..||.|+|||+.+++.+.. +|...|++++|+|||++|++++. |++|+||++..
T Consensus 332 ~~~lv~~sg-~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~-----D~tvriWdv~~ 395 (420)
T 4gga_A 332 YKELISGHG-FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA-----DETLRLWRCFE 395 (420)
T ss_dssp TTEEEEEEC-TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET-----TTEEEEECCSC
T ss_pred CCeEEEEEe-cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec-----CCeEEEEECCC
Confidence 999988762 2289999999999888765 67789999999999999999999 99999999753
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-28 Score=256.97 Aligned_cols=284 Identities=12% Similarity=0.171 Sum_probs=221.6
Q ss_pred cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 242 AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 242 ~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
.|. .|.+++|||+|++|++++.+ +.|+|||+.+++.+..+.+|...+. +++|+| +
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~ 85 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKD----------SSASVWYSLNGERLGTLDGHTGTIW-------------SIDVDC-F 85 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESS----------SCEEEEETTTCCEEEEECCCSSCEE-------------EEEECT-T
T ss_pred EeeceEEEEEEcCCCCEEEEEeCC----------CEEEEEeCCCchhhhhhhhcCCcEE-------------EEEEcC-C
Confidence 344 59999999999999999999 9999999999999999998887764 799999 9
Q ss_pred CcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCC---CCcEEEEEecCCcceeeeee
Q 005315 321 DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN---QPARVSLVQIPSKEELRQKN 396 (702)
Q Consensus 321 g~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~ 396 (702)
+++|++++ |+.|++|++.+++.+.... +...+.+++|+|++++|++ ++.+ ....|.+|++..........
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-----~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 86 TKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLA-----ILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEE-----EECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEE-----ecCCccCCCCEEEEEEecCCccceeec
Confidence 99999998 9999999999988776554 6667999999999999998 3343 11334444432221111000
Q ss_pred ecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC--ceeEEEEeeCCcEEEEEEcC
Q 005315 397 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHGD 474 (702)
Q Consensus 397 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d 474 (702)
. .. ..+. ..+..|.. .+.+++|+|++++|++++.+
T Consensus 160 ~---------~~--------------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 196 (369)
T 3zwl_B 160 K---------VS--------------------------------EEPI--HKIITHEGLDAATVAGWSTKGKYIIAGHKD 196 (369)
T ss_dssp E---------EC--------------------------------SSCS--EEEECCTTCCCEEEEEECGGGCEEEEEETT
T ss_pred c---------cc--------------------------------ccee--eeccCCcCccceeEEEEcCCCCEEEEEcCC
Confidence 0 00 0000 11223444 89999999999999999999
Q ss_pred CCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-cccCceeee
Q 005315 475 SPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDV 551 (702)
Q Consensus 475 ~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~~i~~~ 551 (702)
+ .|++||+++.. ..+..+. ...+.+++|+|+|++|++++. ||.|++||+.+++.+.. .+...+..+
T Consensus 197 g---~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~ 265 (369)
T 3zwl_B 197 G---KISKYDVSNNY-----EYVDSIDLHEKSISDMQFSPDLTYFITSSR---DTNSFLVDVSTLQVLKKYETDCPLNTA 265 (369)
T ss_dssp S---EEEEEETTTTT-----EEEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred C---EEEEEECCCCc-----EeEEEEecCCCceeEEEECCCCCEEEEecC---CceEEEEECCCCceeeeecCCCCceeE
Confidence 9 99999997522 1444444 457999999999999999998 99999999998887765 355789999
Q ss_pred EECCCCCEEEEEEeecccccc--------------cEEEEEec-cceeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 552 EWDPTGRYVATAVTSVHEMEN--------------GFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 552 ~~spdg~~l~t~s~~~~~~d~--------------~v~iw~~~-g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
+|+|+|+++++++. ++ .+++|+.. +..+... |...+.+++|+|++++|++++.|+.|+
T Consensus 266 ~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 340 (369)
T 3zwl_B 266 VITPLKEFIILGGG-----QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIR 340 (369)
T ss_dssp EECSSSSEEEEEEC-----CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EecCCCceEEEeec-----CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEE
Confidence 99999999999998 55 79999986 4444333 668999999999999999999998775
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=6.8e-28 Score=260.82 Aligned_cols=324 Identities=12% Similarity=0.157 Sum_probs=246.9
Q ss_pred EecCCCCCCCcccccCCCccc-ceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CC-CeeEEEecCCCCEEEEE
Q 005315 186 LWNDARHLKPEPVYKRSYWTE-SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTY 261 (702)
Q Consensus 186 ~w~~~~~~~~~~~~~~~~~~v-~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~fSpdg~~l~t~ 261 (702)
.|.......+...+.+|...+ ++++| ++.+|++++.++ |++||.. +++.+..+. |. .|.+++|+|++ +|+++
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~-~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~ 179 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHGG-ILVSG 179 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECSTT-EEEEE
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECC-CCcEEEEEeCCCcCEEEEEEcCCC-EEEEE
Confidence 454433333445678888775 55555 678999999999 8899999 788777774 44 59999999998 99999
Q ss_pred cCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEc--CCCCcEEEEec-CCeEEEEecC
Q 005315 262 SSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG--GGKDKYFAKLG-KNMISVYETE 338 (702)
Q Consensus 262 s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s--~~dg~~la~~~-d~~i~v~d~~ 338 (702)
+.| ++|++||+.+++.+..+.+|...+. ++.|+ + ++.+|++++ |+.|++|++.
T Consensus 180 s~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~l~~~~~~-~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 180 STD----------RTVRVWDIKKGCCTHVFEGHNSTVR-------------CLDIVEYK-NIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp ETT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEEEESS-SCEEEEEEETTSCEEEEECC
T ss_pred eCC----------CCEEEEECCCCcEEEEECCCCCccE-------------EEEEecCC-CCCEEEEEcCCCcEEEeeCC
Confidence 999 9999999999999999998877763 66776 6 788999999 9999999998
Q ss_pred Cccccc-----------------------ceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee
Q 005315 339 SFTLID-----------------------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 395 (702)
Q Consensus 339 ~~~~~~-----------------------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 395 (702)
++.... ....|...+.++ +|+++++++ ++.++. |.+|++.+.+.+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~-----~~~d~~--i~vwd~~~~~~~~~~ 306 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVS-----GSYDNT--LIVWDVAQMKCLYIL 306 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEE-----EETTSC--EEEEETTTTEEEEEE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEE-----EeCCCe--EEEEECCCCcEEEEe
Confidence 765332 122233445544 678889998 556665 556677777666655
Q ss_pred eecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCC
Q 005315 396 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 475 (702)
Q Consensus 396 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 475 (702)
..+......+.|+|+|.++++++.++. +.+|++.... ....+.+|...|.+++|+ +++|++++.|+
T Consensus 307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~---------i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 372 (464)
T 3v7d_B 307 SGHTDRIYSTIYDHERKRCISASMDTT---------IRIWDLENGE---LMYTLQGHTALVGLLRLS--DKFLVSAAADG 372 (464)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSC---------EEEEETTTTE---EEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCc---------EEEEECCCCc---EEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence 555666677899999999999999877 8899886532 334567899999999997 58999999999
Q ss_pred CCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee---cccCceeeeE
Q 005315 476 PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVE 552 (702)
Q Consensus 476 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~---~~~~~i~~~~ 552 (702)
.|++||+.+... .........+..++|+|+|+++++++ +|.|++||+.+++.+.. .+...|++++
T Consensus 373 ---~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~----dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~ 440 (464)
T 3v7d_B 373 ---SIRGWDANDYSR-----KFSYHHTNLSAITTFYVSDNILVSGS----ENQFNIYNLRSGKLVHANILKDADQIWSVN 440 (464)
T ss_dssp ---EEEEEETTTCCE-----EEEEECTTCCCEEEEEECSSEEEEEE----TTEEEEEETTTCCEEESCTTTTCSEEEEEE
T ss_pred ---cEEEEECCCCce-----eeeecCCCCccEEEEEeCCCEEEEec----CCeEEEEECCCCcEEehhhccCCCcEEEEE
Confidence 999999976441 22222455678899999999999887 79999999999988864 5568899999
Q ss_pred ECCCCCEEEEEEeecccccccEEEEE
Q 005315 553 WDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 553 ~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
|+ ++.+++++.. ++.+.+|-
T Consensus 441 ~~--~~~l~~~~~~----~g~~~i~~ 460 (464)
T 3v7d_B 441 FK--GKTLVAAVEK----DGQSFLEI 460 (464)
T ss_dssp EE--TTEEEEEEEE----TTEEEEEE
T ss_pred ec--CCEEEEEEEe----CCeEEEEE
Confidence 97 5566665552 55555543
No 64
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=253.87 Aligned_cols=279 Identities=12% Similarity=0.150 Sum_probs=201.3
Q ss_pred ceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--cEEeec-cC-CCcccccCCCCCCCCc
Q 005315 236 NRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDF-KG-SADEFAVGGTGGVAGV 309 (702)
Q Consensus 236 ~~~~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g--~~~~~~-~~-~~~~~~~~~~~~~~~~ 309 (702)
+.+..+ .|. .|.+++|+|+ +||+++.| ++|+|||+.++ ..+..+ .. |...+.
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D----------~~i~lw~~~~~~~~~~~~~~~~~h~~~v~---------- 62 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTD----------RKIKLVSVKYDDFTLIDVLDETAHKKAIR---------- 62 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESS----------SCEEEEECSSSCCEEEEEECTTCCCSCEE----------
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCC----------CEEEEEEecCCCeEEEEEEecCCccCCEE----------
Confidence 334444 244 5999999998 99999999 99999999875 345555 33 655553
Q ss_pred ccceEEEcCCCCcEEEEec-CCeEEEEecCCc-------ccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEE
Q 005315 310 SWPVFRWGGGKDKYFAKLG-KNMISVYETESF-------TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 381 (702)
Q Consensus 310 ~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 381 (702)
+++|+| ++++|++++ |++|+||++... ..+.....|...|.+++|+|++++|++ ++.|+.+++
T Consensus 63 ---~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las-----~s~D~~v~i 133 (330)
T 2hes_X 63 ---SVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT-----CSRDKSVWI 133 (330)
T ss_dssp ---EEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEE-----EETTSCEEE
T ss_pred ---EEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEE-----EeCCCEEEE
Confidence 799999 999999999 999999998532 223333446667888888888888777 666666555
Q ss_pred EEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCCCCceeEEE
Q 005315 382 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNKNDKIIAFA 460 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h~~~v~~~~ 460 (702)
|... ..+.. .....+.+|...|.+++
T Consensus 134 wd~~-----------------------------------------------------~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 134 WETD-----------------------------------------------------ESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EECC-----------------------------------------------------TTCCCCEEEEEECCCSSCEEEEE
T ss_pred Eecc-----------------------------------------------------CCCCCeEEEEEeccCCCceEEEE
Confidence 4331 11000 01123557899999999
Q ss_pred EeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccC--CCEEEEEeccCCCceEEEEECCC
Q 005315 461 WEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPS--GRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 461 ~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spd--g~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
|+|++.+|++++.|+ .|++|++..+. ...+..+.+| .|.+++|+|+ +.+|++++. |+.|++||+.+
T Consensus 161 ~~p~~~~l~s~s~D~---~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---D~~v~iw~~~~ 230 (330)
T 2hes_X 161 WHPSEALLASSSYDD---TVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD---DSTVRVWKYMG 230 (330)
T ss_dssp ECSSSSEEEEEETTS---CEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSCEEEEEET---TSCEEEEEEEE
T ss_pred ECCCCCEEEEEcCCC---eEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC---CCeEEEEEecC
Confidence 999999999999999 99999986542 2256666655 6999999999 778999998 99999999875
Q ss_pred c--------ceeee---cccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc---eeee---eccc-cEeeEEEe
Q 005315 537 L--------ETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK---LLYR---TLKD-HFFQFLWR 598 (702)
Q Consensus 537 ~--------~~~~~---~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~---~l~~---~~~~-~i~~~~w~ 598 (702)
. ..... .|...|.+++|++++ +|++++. |+.|+||+.... .+.. .|.. .+..++|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~ 304 (330)
T 2hes_X 231 DDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA-----DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL 304 (330)
T ss_dssp ECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET-----TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC
T ss_pred CCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC-----CCEEEEEEcCCCceEEEeccccccccceEEEEEEe
Confidence 4 22222 266889999999765 7899999 999999998743 2222 2444 79999999
Q ss_pred e--CCCCCCChhhHHHHH
Q 005315 599 P--RPPSFLTPEKEEEIA 614 (702)
Q Consensus 599 p--~~~~l~s~~~d~~i~ 614 (702)
| ++..|++++.|+.|+
T Consensus 305 ~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 305 ELNGKTILATGGDDGIVN 322 (330)
T ss_dssp -----CCEEEEETTSEEE
T ss_pred cCCCceEEEEecCCCcEE
Confidence 9 688999999887764
No 65
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-28 Score=246.89 Aligned_cols=277 Identities=14% Similarity=0.130 Sum_probs=214.7
Q ss_pred CCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee-cC-CCeeEEEecCCCCEEEEEcCCCCCCC
Q 005315 193 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AH-PQVKLIDFSPGEKYLVTYSSHEPSNP 269 (702)
Q Consensus 193 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~-~~v~~i~fSpdg~~l~t~s~d~~~~~ 269 (702)
.++...+.+|...|++++| |+|++||+++.++ |++|+.. +......+ .| ..|.+++|+|++++|++++.+
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 80 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD-DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD----- 80 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEES-SSEEEEEEEECSSCEEEEEEETTTTEEEEEETT-----
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC-CCEEEEEeecCCccEEEEEECCCCCEEEEecCC-----
Confidence 3455678899999999999 9999999999999 8899998 66655544 33 359999999999999999999
Q ss_pred cCCCccEEEEEEccCC---cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccc
Q 005315 270 RDANRVVINIFDVRTG---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 345 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~ 345 (702)
+.|++|++.+. +.+..+..|...+. ++.| +++++++++ ++.|++|+ .+..+..
T Consensus 81 -----g~i~~~~~~~~~~~~~~~~~~~~~~~i~-------------~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~ 137 (313)
T 3odt_A 81 -----TMINGVPLFATSGEDPLYTLIGHQGNVC-------------SLSF---QDGVVISGSWDKTAKVWK--EGSLVYN 137 (313)
T ss_dssp -----SCEEEEETTCCTTSCC-CEECCCSSCEE-------------EEEE---ETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred -----CeEEEEEeeecCCCCcccchhhcccCEE-------------EEEe---cCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence 99999998654 55677777766652 5666 456888888 99999999 4445545
Q ss_pred eeeccCCeeEEEeCC-CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccc
Q 005315 346 KSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT 424 (702)
Q Consensus 346 ~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~ 424 (702)
...+...+.++.|+| ++..+++ ++.++.+++|. .. +
T Consensus 138 ~~~~~~~v~~~~~~~~~~~~l~~-----~~~d~~i~i~d--~~--~---------------------------------- 174 (313)
T 3odt_A 138 LQAHNASVWDAKVVSFSENKFLT-----ASADKTIKLWQ--ND--K---------------------------------- 174 (313)
T ss_dssp EECCSSCEEEEEEEETTTTEEEE-----EETTSCEEEEE--TT--E----------------------------------
T ss_pred cccCCCceeEEEEccCCCCEEEE-----EECCCCEEEEe--cC--c----------------------------------
Confidence 555677788888887 7777777 55555555442 10 0
Q ss_pred cccccccEEEEEEecCCcceeEEEecC-CCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--
Q 005315 425 KKSTYTGFELFRIKERDIPIEVLELDN-KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-- 501 (702)
Q Consensus 425 ~~~~~~~~~l~~l~~~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-- 501 (702)
....+.. |...+.+++|+|++. +++++.++ .|++||++++. .+..+.
T Consensus 175 --------------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg---~i~i~d~~~~~------~~~~~~~~ 224 (313)
T 3odt_A 175 --------------------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG---LIKLVDMHTGD------VLRTYEGH 224 (313)
T ss_dssp --------------------EEEEECSSCSSCEEEEEEEETTE-EEEEETTS---EEEEEETTTCC------EEEEEECC
T ss_pred --------------------eEEEEeccCcccEEEEEEcCCCe-EEEccCCC---eEEEEECCchh------hhhhhhcC
Confidence 0011222 688999999999998 88999999 99999997654 455554
Q ss_pred CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 502 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 502 ~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
...+++++|+|+| .|++++. ||.|++||+.+++.+.. .+...+++++|+|+|+ +++++. |+.+++|++
T Consensus 225 ~~~i~~~~~~~~~-~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-----dg~i~iw~~ 294 (313)
T 3odt_A 225 ESFVYCIKLLPNG-DIVSCGE---DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS-----DNLVRIFSQ 294 (313)
T ss_dssp SSCEEEEEECTTS-CEEEEET---TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET-----TSCEEEEES
T ss_pred CceEEEEEEecCC-CEEEEec---CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC-----CCcEEEEeC
Confidence 4479999999999 5777777 99999999998877654 5567899999999999 566778 899999998
Q ss_pred ccc
Q 005315 580 NGK 582 (702)
Q Consensus 580 ~g~ 582 (702)
...
T Consensus 295 ~~~ 297 (313)
T 3odt_A 295 EKS 297 (313)
T ss_dssp CGG
T ss_pred CCC
Confidence 854
No 66
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.3e-27 Score=257.15 Aligned_cols=322 Identities=13% Similarity=0.172 Sum_probs=252.0
Q ss_pred EecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CC-CeeEEEecCCCCEEEEEc
Q 005315 186 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYS 262 (702)
Q Consensus 186 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~fSpdg~~l~t~s 262 (702)
.|.. ...++...+.+|...+.. +++++|++||+++.++ |++|+.. +++.+..+. |. .|.+++|+ +.+|++++
T Consensus 102 ~w~~-~~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~ 176 (445)
T 2ovr_B 102 NWRR-GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMR--DNIIISGS 176 (445)
T ss_dssp HHHH-SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEE--TTEEEEEE
T ss_pred cccC-CCcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECC-CCcEEEEEcCCCCCEEEEEec--CCEEEEEe
Confidence 3444 234455678889876533 3556799999999999 8899999 777777763 44 59999997 67999999
Q ss_pred CCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc
Q 005315 263 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 341 (702)
Q Consensus 263 ~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~ 341 (702)
.| ++|++||+.+++.+..+.+|...+. ++.|+ ++++++++ |+.|++|++.+++
T Consensus 177 ~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~---~~~l~s~s~dg~i~~wd~~~~~ 230 (445)
T 2ovr_B 177 TD----------RTLKVWNAETGECIHTLYGHTSTVR-------------CMHLH---EKRVVSGSRDATLRVWDIETGQ 230 (445)
T ss_dssp TT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEEE---TTEEEEEETTSEEEEEESSSCC
T ss_pred CC----------CeEEEEECCcCcEEEEECCCCCcEE-------------EEEec---CCEEEEEeCCCEEEEEECCCCc
Confidence 99 9999999999999999998887663 56664 46788888 9999999999988
Q ss_pred cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccc
Q 005315 342 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 421 (702)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 421 (702)
.+.....|...|.+++| ++.++++ ++.++.++ +|+..+.+.+.....+......+.| ++.++++++.++
T Consensus 231 ~~~~~~~~~~~v~~~~~--~~~~l~~-----~~~dg~i~--iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 231 CLHVLMGHVAAVRCVQY--DGRRVVS-----GAYDFMVK--VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp EEEEEECCSSCEEEEEE--CSSCEEE-----EETTSCEE--EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred EEEEEcCCcccEEEEEE--CCCEEEE-----EcCCCEEE--EEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 88777778888999999 6788888 55666554 5566666655555444455555666 889999999887
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC
Q 005315 422 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 501 (702)
Q Consensus 422 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 501 (702)
. +.+|++..... ...+.+|...+.++.+ +++++++++.|+ .|++||++++. .+..+.
T Consensus 300 ~---------i~i~d~~~~~~---~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~vwd~~~~~------~~~~~~ 356 (445)
T 2ovr_B 300 S---------IRVWDVETGNC---IHTLTGHQSLTSGMEL--KDNILVSGNADS---TVKIWDIKTGQ------CLQTLQ 356 (445)
T ss_dssp C---------EEEEETTTCCE---EEEECCCCSCEEEEEE--ETTEEEEEETTS---CEEEEETTTCC------EEEEEC
T ss_pred e---------EEEEECCCCCE---EEEEcCCcccEEEEEE--eCCEEEEEeCCC---eEEEEECCCCc------EEEEEc
Confidence 7 88998875432 2456678888888776 577999999999 99999997654 455554
Q ss_pred C-----CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-------cccCceeeeEECCCCCEEEEEEeeccc
Q 005315 502 G-----KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-------AEHFMATDVEWDPTGRYVATAVTSVHE 569 (702)
Q Consensus 502 ~-----~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-------~~~~~i~~~~~spdg~~l~t~s~~~~~ 569 (702)
. ..+.+++|+ +++|++++. ||.|++||+.+++.+.. .+...|++++|+|+|.+|++++.
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~---- 427 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVITSSD---DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR---- 427 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEEEET---TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS----
T ss_pred cCCCCCCCEEEEEEC--CCEEEEEeC---CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEccc----
Confidence 2 368888885 679999998 99999999998887654 34578999999999999999999
Q ss_pred cccc----EEEEEeccc
Q 005315 570 MENG----FNIWSFNGK 582 (702)
Q Consensus 570 ~d~~----v~iw~~~g~ 582 (702)
|+. +.|||+...
T Consensus 428 -dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 428 -NGTEETKLLVLDFDVD 443 (445)
T ss_dssp -SSSSCCEEEEEECCCC
T ss_pred -CCCCccEEEEEECCCC
Confidence 887 999998753
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.7e-29 Score=266.51 Aligned_cols=301 Identities=10% Similarity=0.053 Sum_probs=219.1
Q ss_pred EecCCCCCCCcccc-cCCCcccceEEECC-CCcEEEEEeCCc-eEEeecCcC------cceeeeecCC-CeeEEEecCCC
Q 005315 186 LWNDARHLKPEPVY-KRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANT------FNRLMRYAHP-QVKLIDFSPGE 255 (702)
Q Consensus 186 ~w~~~~~~~~~~~~-~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~------~~~~~~~~~~-~v~~i~fSpdg 255 (702)
.|+. .++....+ .+|...|++++|+| +|++||+++.|+ |+||+.. + ......+.|. .|.+++|+|++
T Consensus 47 ~w~~--~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 123 (437)
T 3gre_A 47 MGNL--RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLK-EIIVGEVYSSSLTYDCSSTVTQITMIPNF 123 (437)
T ss_dssp GGGC--CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHH-HHHTTCCCSCSEEEECSSCEEEEEECTTS
T ss_pred cccc--cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECc-ccccCcccceeeeccCCCCEEEEEEeCCC
Confidence 3764 46677777 88999999999999 999999999999 8899987 4 2234444555 59999999999
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEcc---CCcEEeeccCCCcccccCCCC-CCCCcccceEEEcCCCCcEEEEec-CC
Q 005315 256 KYLVTYSSHEPSNPRDANRVVINIFDVR---TGKVMRDFKGSADEFAVGGTG-GVAGVSWPVFRWGGGKDKYFAKLG-KN 330 (702)
Q Consensus 256 ~~l~t~s~d~~~~~~~~~~~~i~vwd~~---~g~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~s~~dg~~la~~~-d~ 330 (702)
++|++++.| +.|++||+. +++.++.+..+.......... ....+..-...+++ ++.+|++++ |+
T Consensus 124 ~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~ 192 (437)
T 3gre_A 124 DAFAVSSKD----------GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLS 192 (437)
T ss_dssp SEEEEEETT----------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTS
T ss_pred CEEEEEeCC----------CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCC
Confidence 999999999 999999994 676665554331100000000 00000000223778 999999999 99
Q ss_pred eEEEEecCCcccccceee--ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEc
Q 005315 331 MISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 408 (702)
Q Consensus 331 ~i~v~d~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 408 (702)
.|++||+.+++.+..... |...|.+++|+|++++|++ ++.++.+++| ++...+.+.
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-----~~~dg~i~iw--d~~~~~~~~--------------- 250 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLIL-----GTTRGIIDIW--DIRFNVLIR--------------- 250 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEE-----EETTSCEEEE--ETTTTEEEE---------------
T ss_pred eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEE-----EcCCCeEEEE--EcCCccEEE---------------
Confidence 999999999888776665 6778999999999999998 6666665544 332211110
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee----CCcEEEEEEcCCCCCeEEEEE
Q 005315 409 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP----KGHRFAVIHGDSPRPDISFYS 484 (702)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp----~g~~l~~~~~d~~~~~v~i~d 484 (702)
.+.+ .|...|.+++|+| ++.+|++++.|+ .|++||
T Consensus 251 -------------------------------------~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg---~i~iwd 289 (437)
T 3gre_A 251 -------------------------------------SWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKT---FLTIWN 289 (437)
T ss_dssp -------------------------------------EEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTE---EEEEEE
T ss_pred -------------------------------------EEec-CCCCceEEEEeccccCCCccEEEEEcCCC---cEEEEE
Confidence 0111 4566788886654 678999999999 999999
Q ss_pred eecccCcCceEEEEEcC----------------------------CCceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 485 MRTAQHAGRVSKLTTLK----------------------------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 485 ~~~~~~~~~~~~~~~~~----------------------------~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
++++. .+..+. ...+++++|+ ++++|++++. ||.|++||+.+
T Consensus 290 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~---d~~i~~wd~~~ 359 (437)
T 3gre_A 290 FVKGH------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA---TSSIVMFSLNE 359 (437)
T ss_dssp TTTTE------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG---GTEEEEEETTC
T ss_pred cCCCc------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC---CCeEEEEECCC
Confidence 97554 222221 1247889999 7889999998 99999999987
Q ss_pred cceeee--c-------------------------------------ccCceeeeEECCC--CCEEEEEEeecccccccEE
Q 005315 537 LETMAT--A-------------------------------------EHFMATDVEWDPT--GRYVATAVTSVHEMENGFN 575 (702)
Q Consensus 537 ~~~~~~--~-------------------------------------~~~~i~~~~~spd--g~~l~t~s~~~~~~d~~v~ 575 (702)
++.+.. . |...|++++|+++ +.+|++++. ||.|+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~-----dG~I~ 434 (437)
T 3gre_A 360 LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN-----SGLIG 434 (437)
T ss_dssp GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET-----TSCEE
T ss_pred cccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC-----CceEE
Confidence 664432 1 6688999999998 779999999 99999
Q ss_pred EEE
Q 005315 576 IWS 578 (702)
Q Consensus 576 iw~ 578 (702)
||+
T Consensus 435 iw~ 437 (437)
T 3gre_A 435 IFQ 437 (437)
T ss_dssp EEC
T ss_pred EeC
Confidence 995
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.9e-28 Score=257.34 Aligned_cols=276 Identities=17% Similarity=0.297 Sum_probs=210.7
Q ss_pred cCCCcc--cceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec--CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005315 200 KRSYWT--ESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 200 ~~~~~~--v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~ 273 (702)
.+|... +.+++|++ ..+++++.++ |+||+.. ++.....+. |. .|.+++|+|+|++|++++.+
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d--------- 155 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNAD-SGSVSALAETDESTYVASVKWSHDGSFLSVGLGN--------- 155 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETT-TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT---------
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCC-CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC---------
Confidence 355544 55677775 4466666666 8999998 666555543 34 49999999999999999999
Q ss_pred ccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCC-cccccceeeccC
Q 005315 274 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-FTLIDKKSLKVE 351 (702)
Q Consensus 274 ~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~-~~~~~~~~~~~~ 351 (702)
+.|++||+.+++.++.+.+|...+. ++.|++ .+|++++ ++.|.+|++.. ...+.....|..
T Consensus 156 -g~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 156 -GLVDIYDVESQTKLRTMAGHQARVG-------------CLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp -SCEEEEETTTCCEEEEECCCSSCEE-------------EEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred -CeEEEEECcCCeEEEEecCCCCceE-------------EEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 9999999999999999998877763 677744 6888888 99999999984 444445556777
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 431 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 431 (702)
.|.+++|+|++++|++ ++.++.+++| ++.+.+
T Consensus 219 ~v~~~~~~~~~~~l~s-----~~~d~~v~iw--d~~~~~----------------------------------------- 250 (401)
T 4aez_A 219 EVCGLAWRSDGLQLAS-----GGNDNVVQIW--DARSSI----------------------------------------- 250 (401)
T ss_dssp CEEEEEECTTSSEEEE-----EETTSCEEEE--ETTCSS-----------------------------------------
T ss_pred CeeEEEEcCCCCEEEE-----EeCCCeEEEc--cCCCCC-----------------------------------------
Confidence 8999999999998888 5566655443 332111
Q ss_pred EEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEE---cCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeE
Q 005315 432 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH---GDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANA 507 (702)
Q Consensus 432 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~---~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~ 507 (702)
....+..|...|.+++|+|++..+++.+ .|+ .|++||+.++. .+..+. ...+.+
T Consensus 251 -------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~---~i~i~d~~~~~------~~~~~~~~~~v~~ 308 (401)
T 4aez_A 251 -------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK---QIHFWNAATGA------RVNTVDAGSQVTS 308 (401)
T ss_dssp -------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC---EEEEEETTTCC------EEEEEECSSCEEE
T ss_pred -------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCC---EEEEEECCCCC------EEEEEeCCCcEEE
Confidence 0122346788999999999876555544 377 99999997654 444443 447999
Q ss_pred EEEccCCCEEEEEe--ccCCCceEEEEECCCcceee----ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 508 LFWSPSGRFIVLAG--LKGFNGQLEFYNVDELETMA----TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 508 ~~~spdg~~l~~~~--~~~~dg~v~i~d~~~~~~~~----~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
++|+|+|+++++++ . +|.|++|++.++.... ..|...|++++|+|+|++|++++. |+.+++|++..
T Consensus 309 ~~~s~~~~~l~~~~g~~---dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~-----dg~i~iw~~~~ 380 (401)
T 4aez_A 309 LIWSPHSKEIMSTHGFP---DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS-----DENLKFWRVYD 380 (401)
T ss_dssp EEECSSSSEEEEEECTT---TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT-----TSEEEEEECCC
T ss_pred EEECCCCCeEEEEeecC---CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC-----CCcEEEEECCC
Confidence 99999999999964 5 9999999999754433 256789999999999999999999 99999999874
Q ss_pred c
Q 005315 582 K 582 (702)
Q Consensus 582 ~ 582 (702)
.
T Consensus 381 ~ 381 (401)
T 4aez_A 381 G 381 (401)
T ss_dssp -
T ss_pred C
Confidence 3
No 69
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.7e-28 Score=264.11 Aligned_cols=290 Identities=11% Similarity=0.171 Sum_probs=204.4
Q ss_pred CCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc-----------eeeee-cC-------------CCeeEEEecCC
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-----------RLMRY-AH-------------PQVKLIDFSPG 254 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-----------~~~~~-~~-------------~~v~~i~fSpd 254 (702)
.|...|++++|||+|++||+|+.++ |+||+.. +.. .+..+ .| ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQE-QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEEC-C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEec-CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 4568899999999999999999999 8899988 444 23344 34 45999999999
Q ss_pred C--CEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEe---------------------------------------e-cc
Q 005315 255 E--KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR---------------------------------------D-FK 292 (702)
Q Consensus 255 g--~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~---------------------------------------~-~~ 292 (702)
+ .+|++++.| ++|++||+.++.... . ..
T Consensus 105 ~~~~~l~s~s~d----------~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 105 KNAAQFLLSTND----------KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CSSSEEEEEECS----------SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred CCcceEEEeCCC----------CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 8 899999999 999999997755421 1 23
Q ss_pred CCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCc-cccc-------ceeeccCCeeEEEeCCCC-C
Q 005315 293 GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESF-TLID-------KKSLKVENVMDFSWSPTD-P 363 (702)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~-~~~~-------~~~~~~~~v~~~~~sp~~-~ 363 (702)
+|...+. +++|+| ++++|+++.|+.|++||+.+. ..+. ....|...|.+++|+|++ +
T Consensus 175 ~h~~~v~-------------~~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 175 AHTYHIN-------------SISINS-DYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp CCSSCCC-------------EEEECT-TSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred CCCcceE-------------EEEEcC-CCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence 4444332 789999 999999988999999999843 3322 123456679999999998 8
Q ss_pred eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005315 364 IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 443 (702)
Q Consensus 364 ~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 443 (702)
+|++ ++.++.+++| ++...+..... .. .+.... .+
T Consensus 241 ~l~s-----~~~dg~i~iw--d~~~~~~~~~~-------~~-~~~~~~------------------------------~~ 275 (447)
T 3dw8_B 241 TFVY-----SSSKGTIRLC--DMRASALCDRH-------SK-LFEEPE------------------------------DP 275 (447)
T ss_dssp EEEE-----EETTSCEEEE--ETTTCSSSCTT-------CE-EECCC---------------------------------
T ss_pred EEEE-----EeCCCeEEEE--ECcCCccccce-------ee-EeccCC------------------------------Cc
Confidence 8888 6666665554 44332210000 00 000000 00
Q ss_pred eeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeec-ccCcCceEEEEEcCCCc-----------------e
Q 005315 444 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT-AQHAGRVSKLTTLKGKQ-----------------A 505 (702)
Q Consensus 444 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~-----------------v 505 (702)
.....+..|...|.+++|+|+|++|++++. + .|++||++. +. .+..+..+. +
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~---~v~iwd~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~i~~~ 345 (447)
T 3dw8_B 276 SNRSFFSEIISSISDVKFSHSGRYMMTRDY-L---SVKVWDLNMENR------PVETYQVHEYLRSKLCSLYENDCIFDK 345 (447)
T ss_dssp --CCHHHHHTTCEEEEEECTTSSEEEEEES-S---EEEEEETTCCSS------CSCCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred cccccccccCceEEEEEECCCCCEEEEeeC-C---eEEEEeCCCCcc------ccceeeccccccccccccccccccccc
Confidence 000012234569999999999999999888 7 999999975 33 223333231 2
Q ss_pred eEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee----------------------------------cccCceeee
Q 005315 506 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT----------------------------------AEHFMATDV 551 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~----------------------------------~~~~~i~~~ 551 (702)
..++|+|+|++|++++. ||.|++||+.+++.+.. .....|..+
T Consensus 346 ~~~~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 346 FECCWNGSDSVVMTGSY---NNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCEEECTTSSEEEEECS---TTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred eEEEECCCCCEEEEecc---CCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 34999999999999998 99999999998766531 112457889
Q ss_pred EECCCCCEEEEEEeecccccccEEEEEe
Q 005315 552 EWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 552 ~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
+|+|+|.+||+++. +.+++|.-
T Consensus 423 ~~~p~~~~la~~~~------~~~~~~~~ 444 (447)
T 3dw8_B 423 AWHPKENIIAVATT------NNLYIFQD 444 (447)
T ss_dssp EECSSSSEEEEECS------SCEEEEEC
T ss_pred EECCCCCEEEEEec------ceeeeecc
Confidence 99999999999987 56888863
No 70
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1.4e-28 Score=257.70 Aligned_cols=284 Identities=11% Similarity=0.136 Sum_probs=221.2
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCcccceEE
Q 005315 238 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFR 315 (702)
Q Consensus 238 ~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 315 (702)
+..++...|.+++|+|+|++|++++.+ +.|+|||+.+++ .+..+.+|...+. +++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d----------~~v~i~~~~~~~~~~~~~~~~h~~~v~-------------~~~ 59 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNN----------HEVHIYEKSGNKWVQVHELKEHNGQVT-------------GVD 59 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSS----------SEEEEEEEETTEEEEEEEEECCSSCEE-------------EEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCC----------CEEEEEeCCCCcEEeeeeecCCCCccc-------------EEE
Confidence 344556679999999999999999999 999999999887 8888988877764 799
Q ss_pred EcCCCCcEEEEec-CCeEEEEecCCcccccce--eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCccee
Q 005315 316 WGGGKDKYFAKLG-KNMISVYETESFTLIDKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 392 (702)
Q Consensus 316 ~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (702)
|+| ++++|++++ |+.|++|++.+++..... ..+...|.+++|+|++++|++ ++.++.+++|.++.....
T Consensus 60 ~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~d~~v~i~d~~~~~~~-- 131 (372)
T 1k8k_C 60 WAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV-----GSGSRVISICYFEQENDW-- 131 (372)
T ss_dssp EET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEE-----EETTSSEEEEEEETTTTE--
T ss_pred EeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEE-----EeCCCEEEEEEecCCCcc--
Confidence 999 999999998 999999999877643332 235567899999999998888 666666666554422100
Q ss_pred eeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEE
Q 005315 393 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 472 (702)
Q Consensus 393 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 472 (702)
........+|...|.+++|+|++++|++++
T Consensus 132 --------------------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 132 --------------------------------------------------WVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp --------------------------------------------------EEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred --------------------------------------------------eeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 000011236788999999999999999999
Q ss_pred cCCCCCeEEEEEeecccCc------------CceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcc
Q 005315 473 GDSPRPDISFYSMRTAQHA------------GRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE 538 (702)
Q Consensus 473 ~d~~~~~v~i~d~~~~~~~------------~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~ 538 (702)
.++ .|++||++..... .....+..+..+ .+.+++|+|+|++|++++. ||.|++||+.+++
T Consensus 162 ~dg---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 162 CDF---KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH---DSTVCLADADKKM 235 (372)
T ss_dssp TTS---CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET---TTEEEEEEGGGTT
T ss_pred CCC---CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC---CCEEEEEECCCCc
Confidence 999 9999997521100 011256666543 7999999999999999998 9999999999888
Q ss_pred eeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc--c--------------------------------
Q 005315 539 TMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG--K-------------------------------- 582 (702)
Q Consensus 539 ~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g--~-------------------------------- 582 (702)
.+.. .+...+++++|+|+|++|+++ . |+.+++|++.. .
T Consensus 236 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1k8k_C 236 AVATLASETLPLLAVTFITESSLVAAG-H-----DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309 (372)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEEEE-T-----TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred eeEEEccCCCCeEEEEEecCCCEEEEE-e-----CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence 7765 455789999999999988887 7 89999999876 2
Q ss_pred ----------eeeeeccccEeeEEEe-eCC---CCCCChhhHHHHH
Q 005315 583 ----------LLYRTLKDHFFQFLWR-PRP---PSFLTPEKEEEIA 614 (702)
Q Consensus 583 ----------~l~~~~~~~i~~~~w~-p~~---~~l~s~~~d~~i~ 614 (702)
.+...|...|.+++|. +++ .+|+|++.|+.|+
T Consensus 310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~ 355 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 355 (372)
T ss_dssp ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceE
Confidence 1223467899999987 555 8999999998875
No 71
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=243.38 Aligned_cols=280 Identities=15% Similarity=0.236 Sum_probs=211.6
Q ss_pred ccceEEECCCCcEEEEEeCCceEEeecCcCcceeeee--c-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005315 205 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY--A-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 280 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~--~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vw 280 (702)
..++|+||+++ +||+|....|+|||.. +++.+..+ + |. .|.+++|+|+|++||+|+.| ++|+||
T Consensus 27 y~~~l~WS~~~-~lAvg~D~tV~iWd~~-tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D----------g~v~iw 94 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS----------AEVQLW 94 (318)
T ss_dssp TCBCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT----------SEEEEE
T ss_pred cceEEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC----------CcEEEe
Confidence 35789999987 8888875559999999 77766555 2 33 39999999999999999999 999999
Q ss_pred EccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccc-ccceeeccCCeeEEEe
Q 005315 281 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL-IDKKSLKVENVMDFSW 358 (702)
Q Consensus 281 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~ 358 (702)
|+.+++.++.+.+|...+ ..+++ ++.++++++ ++.+.+|+...... +.....|...+..+.+
T Consensus 95 ~~~~~~~~~~~~~h~~~~---------------~~~~~-~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 95 DVQQQKRLRNMTSHSARV---------------GSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp ETTTTEEEEEEECCSSCE---------------EEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred ecCCceeEEEecCccceE---------------EEeec-CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 999999999999887654 46677 888999998 99999999876543 3334456677888899
Q ss_pred CCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEe
Q 005315 359 SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIK 438 (702)
Q Consensus 359 sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~ 438 (702)
++++++|++ ++.++.+++|. +.+.+...
T Consensus 159 ~~~~~~l~s-----~~~d~~i~iwd--~~~~~~~~--------------------------------------------- 186 (318)
T 4ggc_A 159 APDGRHLAS-----GGNDNLVNVWP--SAPGEGGW--------------------------------------------- 186 (318)
T ss_dssp CTTSSEEEE-----EETTSCEEEEE--SSCBTTBS---------------------------------------------
T ss_pred cCCCCEEEE-----EecCcceeEEE--CCCCcccc---------------------------------------------
Confidence 999988888 66666666543 32211000
Q ss_pred cCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEE
Q 005315 439 ERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIV 518 (702)
Q Consensus 439 ~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 518 (702)
........|.+.|.+++++|++..++..........|++|+...... .........+..+.|+|+++.++
T Consensus 187 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 187 -----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----LSAVDAHSQVCSILWSPHYKELI 256 (318)
T ss_dssp -----CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----EEEEECSSCEEEEEEETTTTEEE
T ss_pred -----cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----cccccceeeeeeeeecccccceE
Confidence 00011224578899999999776554332221122899999865441 22233355789999999999998
Q ss_pred EEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 519 LAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 519 ~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+++.. .|+.|++||+.+++.+.+ +|...|++++|+|+|++|++++. |++|+||++.
T Consensus 257 ~~sg~-~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~-----D~~v~iWd~~ 314 (318)
T 4ggc_A 257 SGHGF-AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA-----DETLRLWRCF 314 (318)
T ss_dssp EEECT-TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET-----TTEEEEECCS
T ss_pred EEEEc-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec-----CCeEEEEECC
Confidence 87622 289999999999888775 57789999999999999999999 9999999974
No 72
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.4e-27 Score=248.43 Aligned_cols=301 Identities=9% Similarity=0.089 Sum_probs=206.6
Q ss_pred EecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCCCeeEEEecCCCCEEE-EEcCC
Q 005315 186 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLV-TYSSH 264 (702)
Q Consensus 186 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~-t~s~d 264 (702)
+|.+ ....++..+..|...|++++|||||++||+++.++++||+.. ....+....+.++..+++++++++++ +++.+
T Consensus 3 i~s~-~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSM-ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVH-PVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSEEEEEEET-TEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred cccc-cccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecC-CcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence 3444 345556667889999999999999999999999999999998 77777766666799999999999885 56666
Q ss_pred CCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCc-ccc
Q 005315 265 EPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESF-TLI 343 (702)
Q Consensus 265 ~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~-~~~ 343 (702)
++|+|||+.+++.+..+..+.... ++.|++ + .++.+.++.|++|++.++ +.+
T Consensus 81 ----------~~v~iWd~~~~~~~~~~~~~~~v~--------------~v~~~~-~--~~~~~~~~~i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 81 ----------EVVHIWDDVKKQDVSRIKVDAPVK--------------DLFLSR-E--FIVVSYGDVISVFKFGNPWKRI 133 (355)
T ss_dssp ----------TEEEEEETTTTEEEEEEECSSCEE--------------EEEECS-S--EEEEEETTEEEEEESSTTCCBS
T ss_pred ----------cEEEEEECCCCcEEEEEECCCceE--------------EEEEcC-C--EEEEEEcCEEEEEECCCCceee
Confidence 799999999999998887544322 678877 5 455566899999999987 655
Q ss_pred cceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccc
Q 005315 344 DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 423 (702)
Q Consensus 344 ~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 423 (702)
..... ....++++| .++++ +++.....|.+|++.+......... .+...
T Consensus 134 ~~~~~---~~~~~~~s~--~~la~-----~sg~~~g~v~iwd~~~~~~~~~~~~----------~~~~~----------- 182 (355)
T 3vu4_A 134 TDDIR---FGGVCEFSN--GLLVY-----SNEFNLGQIHITKLQSSGSATTQDQ----------GVQQK----------- 182 (355)
T ss_dssp SCCEE---EEEEEEEET--TEEEE-----EESSCTTCEEEEECCC-----------------------------------
T ss_pred EEecc---CCceEEEEc--cEEEE-----eCCCcCcEEEEEECCCCCccccccc----------ccccc-----------
Confidence 54433 334456666 66766 3223333455555543321100000 00000
Q ss_pred ccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCe-EEEEEeecccCcCceEEEEEcC-
Q 005315 424 TKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD-ISFYSMRTAQHAGRVSKLTTLK- 501 (702)
Q Consensus 424 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~-v~i~d~~~~~~~~~~~~~~~~~- 501 (702)
.+ .+ ....+.+|.+.|.+++|+|+|++|++++.|+ + |++||++++. .+..+.
T Consensus 183 ---------~~-------~p-~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~---~~v~iwd~~~~~------~~~~~~~ 236 (355)
T 3vu4_A 183 ---------AI-------LG-KGVLIKAHTNPIKMVRLNRKSDMVATCSQDG---TIIRVFKTEDGV------LVREFRR 236 (355)
T ss_dssp ---------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC---SEEEEEETTTCC------EEEEEEC
T ss_pred ---------cc-------Cc-ccEEEEccCCceEEEEECCCCCEEEEEeCCC---CEEEEEECCCCc------EEEEEEc
Confidence 00 00 0134568999999999999999999999999 8 9999997654 455554
Q ss_pred ---CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-------------------------cccCceeeeEE
Q 005315 502 ---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-------------------------AEHFMATDVEW 553 (702)
Q Consensus 502 ---~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-------------------------~~~~~i~~~~~ 553 (702)
...|++++|+|+|++|++++. |+.|++||+........ ........++|
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s~s~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAVVSD---KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEEEET---TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEEC---CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 347999999999999999998 99999999975421100 01122367899
Q ss_pred CCCCCEEEEEEeecccccccEEEEEec
Q 005315 554 DPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 554 spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+++|++|++++. |+.+++|++.
T Consensus 314 ~~d~~~l~~~~~-----dg~~~~~~~~ 335 (355)
T 3vu4_A 314 ISESSLVVVWPH-----TRMIETFKVV 335 (355)
T ss_dssp SSSSEEEEEETT-----TTEEEEEEEE
T ss_pred eCCCCEEEEEeC-----CCeEEEEEEE
Confidence 999999999999 9999999976
No 73
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-30 Score=272.94 Aligned_cols=316 Identities=10% Similarity=0.094 Sum_probs=212.4
Q ss_pred cccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005315 204 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~ 283 (702)
.-|.+|+|||||+++|+++.|+... ++. ..+.+ .-|...|.+++|||+| .+ +.+.+|+.
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~-d~~-~~~~l-~gh~~~v~~V~FsPdg-------~~----------~~~~~~~~- 74 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG-QPK-YAKDI-NCNSKNLFHVKEFPLE-------FE----------NKLDFELA- 74 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE-EEC-CCSCC-SSBGGGTEEEEEECCC-------CC----------CTTTTSCC-
T ss_pred ccEEEEEECCCCCEEEEEcCCceee-ccc-cccee-cCCCccEEEEEECCCC-------Cc----------ceEEEEeC-
Confidence 5688999999999999999999433 766 44444 3233359999999999 34 44545553
Q ss_pred CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccC-----CeeEEE
Q 005315 284 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE-----NVMDFS 357 (702)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~-----~v~~~~ 357 (702)
.+..+..+. |...+. +++||| +|++||+++ +|.|++|+..+ ++.... |.. .+.+++
T Consensus 75 ~~~~~~~~~-~~~~V~-------------~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 75 QQNGLLNSQ-PVCYPR-------------VCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp CSSCSSTTS-CSCCEE-------------EEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEE
T ss_pred CCceEeecC-CCCcEE-------------EEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEE
Confidence 222333333 233332 799999 999999999 99999999654 333333 332 599999
Q ss_pred eCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc-----eeeeee----ecccccceeEEccCCCEEEEEEcccccccccc
Q 005315 358 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-----ELRQKN----LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 428 (702)
Q Consensus 358 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~----~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 428 (702)
|||+|++||+ ++.|+.++||........ .+.... .+......++|+|+| +++++.+++
T Consensus 137 fSPDG~~LAs-----gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t------ 203 (588)
T 2j04_A 137 WNPIESSIVV-----GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS------ 203 (588)
T ss_dssp ECSSSSCEEE-----EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC------
T ss_pred EcCCCCEEEE-----EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe------
Confidence 9999999999 777877776665443210 122221 123456678999999 777777776
Q ss_pred cccEEEEEEecCCcceeEEEe-cCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc-CCCcee
Q 005315 429 YTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGKQAN 506 (702)
Q Consensus 429 ~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~ 506 (702)
+++|++...........+ .+|...|.+++|+ |+.+|+++ ++ .|++|++.++.. ....+ +...++
T Consensus 204 ---VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~---tIkLWd~~~~~~-----~~~~~gh~~~V~ 269 (588)
T 2j04_A 204 ---VFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PG---YVHKIDLKNYSI-----SSLKTGSLENFH 269 (588)
T ss_dssp ---EEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS---EEEEEETTTTEE-----EEEECSCCSCCC
T ss_pred ---EEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CC---eEEEEECCCCeE-----EEEEcCCCceEE
Confidence 799998775532112234 3788999999999 68888886 56 999999865431 12222 233689
Q ss_pred EEEE--ccCCCEEEEEeccCCCceEEEEECCCc-----------------------ceeee-cccCceeeeEECCCCCEE
Q 005315 507 ALFW--SPSGRFIVLAGLKGFNGQLEFYNVDEL-----------------------ETMAT-AEHFMATDVEWDPTGRYV 560 (702)
Q Consensus 507 ~~~~--spdg~~l~~~~~~~~dg~v~i~d~~~~-----------------------~~~~~-~~~~~i~~~~~spdg~~l 560 (702)
.++| +|+|..|+++.. +|+ ++|..+.. ..+.. .+...|.+++|||||+.+
T Consensus 270 ~va~~~s~d~~~La~a~e---dG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~l 345 (588)
T 2j04_A 270 IIPLNHEKESTILLMSNK---TSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSI 345 (588)
T ss_dssp EEEETTCSSCEEEEECSS---CEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEE
T ss_pred EEEeeeCCCCCEEEEEcC---CCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEE
Confidence 9999 999999999998 899 99987521 01111 112346778888888888
Q ss_pred EEEEeecccccccEEEEEeccceeeeeccccEeeEEEeeCC
Q 005315 561 ATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRP 601 (702)
Q Consensus 561 ~t~s~~~~~~d~~v~iw~~~g~~l~~~~~~~i~~~~w~p~~ 601 (702)
|+++. | -....-++........+.|-|-.
T Consensus 346 A~~~~----------i--~~~~~~y~i~s~~~~~i~f~pL~ 374 (588)
T 2j04_A 346 AIVYD----------M--ERVAFKYKIASEQSFNIMFAPLY 374 (588)
T ss_dssp EEEEE----------E--ECSSCCCCCSSSCCEEEEEEESS
T ss_pred EEEEe----------c--cCceeEEeeccceEEEEEEEEcc
Confidence 88777 2 11222334444555666666643
No 74
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=1.2e-27 Score=242.39 Aligned_cols=261 Identities=14% Similarity=0.157 Sum_probs=195.9
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCc-Ccceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCc
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPR 270 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~~~~~-~~~-~v~~i~fSpd--g~~l~t~s~d~~~~~~ 270 (702)
..+.+|...|++++|||+|++||+++.|+ |+||+..+ ....+..+ .|. .|.+++|+|+ |++|++++.|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D------ 76 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------ 76 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC------
Confidence 45678999999999999999999999999 88999872 23444444 344 5999999874 8999999999
Q ss_pred CCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCcccceEEEcCCC--CcEEEEec-CCeEEEEecCCcccc--
Q 005315 271 DANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTLI-- 343 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d--g~~la~~~-d~~i~v~d~~~~~~~-- 343 (702)
++|+|||+.+++ .+..+.+|...+. +++|+| + +.+|++++ |+.|++|++.+....
T Consensus 77 ----~~v~iWd~~~~~~~~~~~~~~h~~~v~-------------~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 77 ----GKVMIWKEENGRWSQIAVHAVHSASVN-------------SVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp ----TEEEEEEBSSSCBCCCEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred ----CEEEEEEcCCCceEEEEEeecCCCcee-------------EEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 999999998874 4566677766653 799999 8 88999998 999999999866422
Q ss_pred cceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccc
Q 005315 344 DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 423 (702)
Q Consensus 344 ~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 423 (702)
.....|...|.+++|+|++..-. ... ...+++++|++++.++.
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~--------~~~----------------------------~~~~~~~~l~sgs~D~~- 181 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEED--------GEH----------------------------NGTKESRKFVTGGADNL- 181 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------------------------------------------CCEEEEEETTSC-
T ss_pred eeeecccCccceEeecCCccccc--------ccC----------------------------CCCCCcceEEEEcCCCc-
Confidence 22335667799999999752110 000 01335677888887776
Q ss_pred ccccccccEEEEEEecCCcce-eEEEecCCCCceeEEEEeeCC---cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE
Q 005315 424 TKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEPKG---HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT 499 (702)
Q Consensus 424 ~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp~g---~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~ 499 (702)
+++|++....... ....+.+|...|.+++|+|++ .+|++++.|+ .|+||+++..... . ....
T Consensus 182 --------v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~---~v~iWd~~~~~~~--~-~~~~ 247 (297)
T 2pm7_B 182 --------VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR---TCIIWTQDNEQGP--W-KKTL 247 (297)
T ss_dssp --------EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS---CEEEEEESSTTSC--C-EEEE
T ss_pred --------EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC---cEEEEEeCCCCCc--c-ceee
Confidence 7888887543222 234577899999999999985 8999999999 9999999754321 1 1112
Q ss_pred c--C--CCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 500 L--K--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 500 ~--~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
+ . ...+.+++|+|+|++|++++. ||.|++|+..
T Consensus 248 ~~~~~~~~~v~~~~~s~~g~~las~~~---D~~v~lw~~~ 284 (297)
T 2pm7_B 248 LKEEKFPDVLWRASWSLSGNVLALSGG---DNKVTLWKEN 284 (297)
T ss_dssp SSSSCCSSCEEEEEECSSSCCEEEEET---TSCEEEEEEC
T ss_pred eecccCCCcEEEEEECCCCCEEEEEcC---CCcEEEEEEC
Confidence 2 2 346899999999999999998 9999999976
No 75
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=4.5e-28 Score=275.81 Aligned_cols=273 Identities=12% Similarity=0.201 Sum_probs=216.9
Q ss_pred cCCCeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCC-----cEEeeccCCCcccccCCCCCCCCcccceEE
Q 005315 242 AHPQVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTG-----KVMRDFKGSADEFAVGGTGGVAGVSWPVFR 315 (702)
Q Consensus 242 ~~~~v~~i~fSpdg-~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 315 (702)
|...|++++|+|++ ++|+|++.| ++|+||++.++ ...+.+.+|...+. +++
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D----------~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~-------------~v~ 437 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRD----------KSIILWKLTKDDKAYGVAQRRLTGHSHFVE-------------DVV 437 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETT----------SEEEEEECCCSTTCSCEEEEEEECCSSCEE-------------EEE
T ss_pred CCceeEEEEecCCCCCEEEEEeCC----------CcEEEEEccCCCcccccccceecCCCCcEE-------------EEE
Confidence 33459999999975 799999999 99999998653 45677888887764 799
Q ss_pred EcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 316 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 316 ~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
|+| ++++|++++ |+.|+|||+.++..+.....|...|.+++|+|++++|++ ++.|+.+++|. .
T Consensus 438 ~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-----~s~D~~i~iwd--~-------- 501 (694)
T 3dm0_A 438 LSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS-----ASRDRTIKLWN--T-------- 501 (694)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE-----EETTSCEEEEC--T--------
T ss_pred ECC-CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEE-----EeCCCEEEEEE--C--------
Confidence 999 999999999 999999999998887777778889999999999999998 77888877653 1
Q ss_pred eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC--cEEEEEE
Q 005315 395 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--HRFAVIH 472 (702)
Q Consensus 395 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--~~l~~~~ 472 (702)
.+.... .+.. ...+|...|.+++|+|++ ..|++++
T Consensus 502 ---------------~~~~~~--------------------~~~~--------~~~~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 502 ---------------LGECKY--------------------TISE--------GGEGHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp ---------------TSCEEE--------------------EECS--------STTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred ---------------CCCcce--------------------eecc--------CCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence 111000 0000 012678899999999987 5799999
Q ss_pred cCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-cccCcee
Q 005315 473 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMAT 549 (702)
Q Consensus 473 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~~i~ 549 (702)
.|+ .|++||+++.. ....+.+| .|++++|+|+|++|++++. ||.|++||+.+++.+.. .++..+.
T Consensus 539 ~d~---~v~vwd~~~~~------~~~~~~~h~~~v~~v~~spdg~~l~sg~~---Dg~i~iwd~~~~~~~~~~~~~~~v~ 606 (694)
T 3dm0_A 539 WDK---TVKVWNLSNCK------LRSTLAGHTGYVSTVAVSPDGSLCASGGK---DGVVLLWDLAEGKKLYSLEANSVIH 606 (694)
T ss_dssp TTS---CEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSEEEEEET---TSBCEEEETTTTEEEECCBCSSCEE
T ss_pred CCC---eEEEEECCCCc------EEEEEcCCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceEEEecCCCcEE
Confidence 999 99999996543 55556544 6999999999999999998 99999999998887765 3457799
Q ss_pred eeEECCCCCEEEEEEeecccccccEEEEEecccee-eeec---------------------cccEeeEEEeeCCCCCCCh
Q 005315 550 DVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL-YRTL---------------------KDHFFQFLWRPRPPSFLTP 607 (702)
Q Consensus 550 ~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l-~~~~---------------------~~~i~~~~w~p~~~~l~s~ 607 (702)
+++|+|++.+|++++. ++|+|||+....+ .... .-.+.+++|+|++++|+++
T Consensus 607 ~~~~sp~~~~l~~~~~------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg 680 (694)
T 3dm0_A 607 ALCFSPNRYWLCAATE------HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680 (694)
T ss_dssp EEEECSSSSEEEEEET------TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCcEEEEEcC------CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE
Confidence 9999999988877654 7799999875432 2211 0136789999999999999
Q ss_pred hhHHHHH
Q 005315 608 EKEEEIA 614 (702)
Q Consensus 608 ~~d~~i~ 614 (702)
+.|+.|+
T Consensus 681 s~Dg~i~ 687 (694)
T 3dm0_A 681 YTDGVIR 687 (694)
T ss_dssp ETTSEEE
T ss_pred cCCCeEE
Confidence 9988764
No 76
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=4.4e-27 Score=243.26 Aligned_cols=302 Identities=14% Similarity=0.164 Sum_probs=193.2
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCc----ceeeee-cCC-CeeEEEecC--CCCEEEEEcCCCCC
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF----NRLMRY-AHP-QVKLIDFSP--GEKYLVTYSSHEPS 267 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~----~~~~~~-~~~-~v~~i~fSp--dg~~l~t~s~d~~~ 267 (702)
..+.+|...|++++|+|+|++||+++.++ |+||+.. +. ..+..+ .|. .|.+++|+| ++++|++++.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d--- 80 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLD-KDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD--- 80 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEEC-SSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT---
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECC-CCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC---
Confidence 45679999999999999999999999999 8899988 44 233333 243 599999999 69999999999
Q ss_pred CCcCCCccEEEEEEccCC---------cEEeeccCCCcccccCCCCCCCCcccceEEEcCCC--CcEEEEec-CCeEEEE
Q 005315 268 NPRDANRVVINIFDVRTG---------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVY 335 (702)
Q Consensus 268 ~~~~~~~~~i~vwd~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d--g~~la~~~-d~~i~v~ 335 (702)
+.|++||+.++ +.+..+..|...+. +++|+| + +.+|++++ |+.|++|
T Consensus 81 -------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~l~~~~~dg~v~iw 139 (351)
T 3f3f_A 81 -------KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY-------------SVKFAP-AHLGLKLACLGNDGILRLY 139 (351)
T ss_dssp -------SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTCEEEEE
T ss_pred -------CeEEEEecCCCcccccccCcceeeeecccCCcee-------------EEEEcC-CCCCcEEEEecCCCcEEEe
Confidence 99999999887 55777877777663 799999 9 99999988 9999999
Q ss_pred ecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccC---CC
Q 005315 336 ETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS---GD 412 (702)
Q Consensus 336 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---g~ 412 (702)
|+.+++.+....... .+..+.+.+.+ .......+.|+|+ +.
T Consensus 140 d~~~~~~~~~~~~~~-~~~~~~~~~~~-----------------------------------~~~~~~~~~~~p~~~~~~ 183 (351)
T 3f3f_A 140 DALEPSDLRSWTLTS-EMKVLSIPPAN-----------------------------------HLQSDFCLSWCPSRFSPE 183 (351)
T ss_dssp ECSSTTCTTCCEEEE-EEESCSCCCSS-----------------------------------CSCCCEEEEECCCSSSCC
T ss_pred cCCChHHhccccccc-cccccccccCC-----------------------------------cccceeEEEeccCCCCCc
Confidence 999877654332110 01111111100 0011122344554 55
Q ss_pred EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC----cEEEEEEcCCCCCeEEEEEeecc
Q 005315 413 YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG----HRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 413 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g----~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
+++++..++. + +|.....+.......+.+|...|.+++|+|++ ++|++++.|+ .|++||++.+
T Consensus 184 ~l~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg---~i~iwd~~~~ 250 (351)
T 3f3f_A 184 KLAVSALEQA---------I-IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG---RIRIFKITEK 250 (351)
T ss_dssp EEEEEETTEE---------E-EEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS---CEEEEEEEEC
T ss_pred EEEEecCCCc---------E-EEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC---eEEEEeCCCC
Confidence 5555555443 2 33332222222334566889999999999998 8999999999 9999999865
Q ss_pred cCcCceEEEEEcCCCceeEEEEccCCCEEEEEecc-CCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEe
Q 005315 489 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLK-GFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 489 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~-~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
... ..............+++....+..+... .....+.+|+....+.+.. .|...|++++|+|+|++|++++.
T Consensus 251 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 326 (351)
T 3f3f_A 251 LSP----LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD 326 (351)
T ss_dssp C-------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET
T ss_pred cCc----cccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC
Confidence 421 1111111123334444444444433221 0144455666555555543 56689999999999999999999
Q ss_pred ecccccccEEEEEecc
Q 005315 566 SVHEMENGFNIWSFNG 581 (702)
Q Consensus 566 ~~~~~d~~v~iw~~~g 581 (702)
|+.|+||++..
T Consensus 327 -----dg~v~iw~~~~ 337 (351)
T 3f3f_A 327 -----DGKVRLWKATY 337 (351)
T ss_dssp -----TSCEEEEEECT
T ss_pred -----CCcEEEEecCc
Confidence 99999999974
No 77
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.4e-27 Score=244.07 Aligned_cols=265 Identities=15% Similarity=0.136 Sum_probs=191.0
Q ss_pred cccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc--eeeee-cCC-CeeEEEecC--CCCEEEEEcCCCCCCCc
Q 005315 198 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRY-AHP-QVKLIDFSP--GEKYLVTYSSHEPSNPR 270 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~-~~~-~v~~i~fSp--dg~~l~t~s~d~~~~~~ 270 (702)
.+.+|...|++++|+|+|++||+++.|+ |+|||+. +.. .+..+ .|. .|.+++|+| ++++|++++.|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~-~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D------ 80 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR-NGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD------ 80 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEE-TTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEec-CCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC------
Confidence 4578999999999999999999999999 8899998 443 34444 354 599999986 48999999999
Q ss_pred CCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCcccceEEEcCCC--CcEEEEec-CCeEEEEecCCccc---
Q 005315 271 DANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTL--- 342 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d--g~~la~~~-d~~i~v~d~~~~~~--- 342 (702)
++|+|||+.++. .+..+.+|...+. +++|+| + +.+|++++ |+.|++|++.....
T Consensus 81 ----~~v~iWd~~~~~~~~~~~~~~h~~~V~-------------~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 81 ----RKVIIWREENGTWEKSHEHAGHDSSVN-------------SVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp ----SCEEEECCSSSCCCEEEEECCCSSCCC-------------EEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred ----CEEEEEECCCCcceEEEEccCCCCceE-------------EEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 999999998874 5667777876653 799999 8 78999999 99999999986532
Q ss_pred ccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccc
Q 005315 343 IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 422 (702)
Q Consensus 343 ~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 422 (702)
......|...|.+++|+|++..-.. ...+.. .....+.+|++++.++.
T Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~~~~----------------~~~~~~----------------~~~~~~~~l~sgs~D~~ 190 (316)
T 3bg1_A 143 KKINNAHTIGCNAVSWAPAVVPGSL----------------IDHPSG----------------QKPNYIKRFASGGCDNL 190 (316)
T ss_dssp CCBTTSSSSCBCCCEECCCCCC----------------------CCS----------------CCCCCCCBEECCBTTSB
T ss_pred eeeeccccCCcceEEEccccCCccc----------------cccccc----------------cCccccceEEEecCCCe
Confidence 2223346667899999997421000 000000 01223556777766665
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC----cEEEEEEcCCCCCeEEEEEeecccC-cCceEEE
Q 005315 423 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG----HRFAVIHGDSPRPDISFYSMRTAQH-AGRVSKL 497 (702)
Q Consensus 423 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g----~~l~~~~~d~~~~~v~i~d~~~~~~-~~~~~~~ 497 (702)
+++|++...........+.+|...|.+++|+|++ .+|++++.|+ .|++|++.+... ......+
T Consensus 191 ---------v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~---~v~iw~~~~~~~~~~~~~~~ 258 (316)
T 3bg1_A 191 ---------IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG---RVFIWTCDDASSNTWSPKLL 258 (316)
T ss_dssp ---------CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC---EEEEEECSSTTCCCCBCCEE
T ss_pred ---------EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC---eEEEEEccCccccchhhhhh
Confidence 6777775432222334567899999999999987 8899999999 999999975321 1111123
Q ss_pred EEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 498 TTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 498 ~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
.. ....+.+++|+|+|++|++++. ||.|++|+..
T Consensus 259 ~~-~~~~v~~v~~sp~g~~las~~~---D~~v~lw~~~ 292 (316)
T 3bg1_A 259 HK-FNDVVWHVSWSITANILAVSGG---DNKVTLWKES 292 (316)
T ss_dssp EE-CSSCEEEEEECTTTCCEEEEES---SSCEEEEEEC
T ss_pred hc-CCCcEEEEEEcCCCCEEEEEcC---CCeEEEEEEC
Confidence 32 2457999999999999999998 9999999976
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=3.4e-27 Score=239.05 Aligned_cols=242 Identities=16% Similarity=0.286 Sum_probs=186.6
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC--CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT--GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
...|.+++|||+|++||+++.| ++|+|||+.+ ++.+..+.+|...+. +++|++ +
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D----------~~v~iw~~~~~~~~~~~~l~gH~~~V~-------------~v~~s~-~ 64 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSD----------KTIKIFEVEGETHKLIDTLTGHEGPVW-------------RVDWAH-P 64 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETT----------SCEEEEEBCSSCBCCCEEECCCSSCEE-------------EEEECC-G
T ss_pred cCceEEEEECCCCCEEEEEeCC----------CEEEEEecCCCCcEEEEEEccccCCeE-------------EEEecC-C
Confidence 3359999999999999999999 9999999864 467888999988773 789986 5
Q ss_pred --CcEEEEec-CCeEEEEecCCcc--cccceeeccCCeeEEEeCCC--CCeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 321 --DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 321 --g~~la~~~-d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
+++|++++ |++|+||++.++. .+.....|...|.+++|+|+ +.+|++ ++.++.+++|.+.. ...
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s-----~s~d~~v~~wd~~~--~~~-- 135 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV-----ASSDGKVSVVEFKE--NGT-- 135 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE-----EETTSEEEEEEBCS--SSC--
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE-----EECCCcEEEEEecC--CCc--
Confidence 88999999 9999999998764 33333446677999999997 778887 66666655543321 100
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC---------
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--------- 464 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--------- 464 (702)
. ....+.+|...|.+++|+|+
T Consensus 136 -------------------------------------------------~-~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 136 -------------------------------------------------T-SPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp -------------------------------------------------B-CCEEEECCSSCEEEEEECCCC--------
T ss_pred -------------------------------------------------e-eeeeeecccCccceEeecCCcccccccCC
Confidence 0 00123467788888888886
Q ss_pred ----CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCC---CEEEEEeccCCCceEEEEECC
Q 005315 465 ----GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG---RFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 465 ----g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg---~~l~~~~~~~~dg~v~i~d~~ 535 (702)
+++|++++.|+ .|++||++++.. .......+.+| .|.+++|+|++ ++|++++. |+.|++||+.
T Consensus 166 ~~~~~~~l~sgs~D~---~v~lwd~~~~~~--~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~---D~~v~iWd~~ 237 (297)
T 2pm7_B 166 GTKESRKFVTGGADN---LVKIWKYNSDAQ--TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ---DRTCIIWTQD 237 (297)
T ss_dssp ----CCEEEEEETTS---CEEEEEEETTTT--EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET---TSCEEEEEES
T ss_pred CCCCcceEEEEcCCC---cEEEEEEcCCCc--eEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC---CCcEEEEEeC
Confidence 57999999999 999999976442 12344556555 69999999995 88999998 9999999998
Q ss_pred Ccc-----eee--ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 536 ELE-----TMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 536 ~~~-----~~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+.. .+. ..+...+.+++|+|+|++||+++. |+.|+||+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~-----D~~v~lw~~~ 284 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-----DNKVTLWKEN 284 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET-----TSCEEEEEEC
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC-----CCcEEEEEEC
Confidence 632 111 234578999999999999999999 9999999975
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=2.3e-27 Score=245.40 Aligned_cols=274 Identities=13% Similarity=0.115 Sum_probs=205.9
Q ss_pred ccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcc----eeeeecCC-CeeEEEecCCCC-EEEEEcCCCCCCCcC
Q 005315 199 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN----RLMRYAHP-QVKLIDFSPGEK-YLVTYSSHEPSNPRD 271 (702)
Q Consensus 199 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~----~~~~~~~~-~v~~i~fSpdg~-~l~t~s~d~~~~~~~ 271 (702)
..+|...|++++|+|+|++||+++.++ |.||+.. +.. ......|. .|.+++|+|+++ +|++++.+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------- 78 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD-IQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ------- 78 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEE-TTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-------
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeC-CCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC-------
Confidence 458999999999999999999999998 8899998 554 33344454 599999999999 99999999
Q ss_pred CCccEEEEEEc-cCCcEEeeccC--CCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCC--------
Q 005315 272 ANRVVINIFDV-RTGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-------- 339 (702)
Q Consensus 272 ~~~~~i~vwd~-~~g~~~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~-------- 339 (702)
+.|++||+ .+++. ..+.. |...+. +++|+| +.+|++++ |+.|++|++.+
T Consensus 79 ---g~i~~wd~~~~~~~-~~~~~~~~~~~v~-------------~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 139 (342)
T 1yfq_A 79 ---GEILKVDLIGSPSF-QALTNNEANLGIC-------------RICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp ---SCEEEECSSSSSSE-EECBSCCCCSCEE-------------EEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred ---CeEEEEEeccCCce-EeccccCCCCceE-------------EEEeCC--CCEEEEEcCCCeEEEEcccccccccccc
Confidence 99999999 77765 66666 666553 789998 55666666 99999999987
Q ss_pred -cccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEE
Q 005315 340 -FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 418 (702)
Q Consensus 340 -~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 418 (702)
++.+.... +...|.+++|+|++ +++ ++.++. |.+|++...
T Consensus 140 ~~~~~~~~~-~~~~v~~~~~~~~~--l~~-----~~~d~~--i~i~d~~~~----------------------------- 180 (342)
T 1yfq_A 140 KNLNSNNTK-VKNKIFTMDTNSSR--LIV-----GMNNSQ--VQWFRLPLC----------------------------- 180 (342)
T ss_dssp EESCSSSSS-SCCCEEEEEECSSE--EEE-----EESTTE--EEEEESSCC-----------------------------
T ss_pred cCCeeeEEe-eCCceEEEEecCCc--EEE-----EeCCCe--EEEEECCcc-----------------------------
Confidence 66555443 55678888888877 554 334443 333333220
Q ss_pred cccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEE
Q 005315 419 DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKL 497 (702)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~ 497 (702)
...... .....|...+.+++|+| ++++|++++.++ .|++|+++..........+
T Consensus 181 ---------------------~~~~~~-~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg---~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 181 ---------------------EDDNGT-IEESGLKYQIRDVALLPKEQEGYACSSIDG---RVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp ---------------------TTCCCE-EEECSCSSCEEEEEECSGGGCEEEEEETTS---EEEEEECCTTCCSTTCTTC
T ss_pred ---------------------ccccce-eeecCCCCceeEEEECCCCCCEEEEEecCC---cEEEEEEcCCCcccccccc
Confidence 111001 11225678899999999 999999999999 9999999765100000022
Q ss_pred EEcCCC-----------ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cc-cCceeeeEECCCCCEEEEE
Q 005315 498 TTLKGK-----------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE-HFMATDVEWDPTGRYVATA 563 (702)
Q Consensus 498 ~~~~~~-----------~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~-~~~i~~~~~spdg~~l~t~ 563 (702)
..+..+ .+++++|+|+|++|++++. ||.|++||+.+++.+.. .| ...|++++ |+|++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~ 310 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS---DGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEE
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecC---CceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEE
Confidence 222222 7999999999999999998 99999999998887765 44 67889998 999999999
Q ss_pred Eeeccccccc
Q 005315 564 VTSVHEMENG 573 (702)
Q Consensus 564 s~~~~~~d~~ 573 (702)
+. |+.
T Consensus 311 s~-----Dg~ 315 (342)
T 1yfq_A 311 TS-----DDT 315 (342)
T ss_dssp EE-----CTH
T ss_pred ec-----CCc
Confidence 99 777
No 80
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=4.8e-27 Score=244.37 Aligned_cols=285 Identities=12% Similarity=0.168 Sum_probs=210.2
Q ss_pred cCCCeeEEEecCCCCEEE-EEcC---CCCCCCcCCCccEEEEEEccCCcEEeecc-CCCcccccCCCCCCCCcccceEEE
Q 005315 242 AHPQVKLIDFSPGEKYLV-TYSS---HEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRW 316 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~-t~s~---d~~~~~~~~~~~~i~vwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~ 316 (702)
|...|.+++|+|++.+++ +++. + +.|+|||+.+++...... .|...+. +++|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d----------~~v~iw~~~~~~~~~~~~~~~~~~v~-------------~~~~ 73 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGT----------GVIQLYEIQHGDLKLLREIEKAKPIK-------------CGTF 73 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCC----------EEEEEEEECSSSEEEEEEEEESSCEE-------------EEEC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCC----------cEEEEEeCCCCcccceeeecccCcEE-------------EEEE
Confidence 334599999999996554 5555 6 899999999988754433 4444442 7899
Q ss_pred cCCC---CcEEEEec-CCeEEEEecCCcc-cccceeeccCCeeEE------EeCCCCCeEEEEeecCCCCCCCcEEEEEe
Q 005315 317 GGGK---DKYFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDF------SWSPTDPIISLFVPELGGGNQPARVSLVQ 385 (702)
Q Consensus 317 s~~d---g~~la~~~-d~~i~v~d~~~~~-~~~~~~~~~~~v~~~------~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 385 (702)
+| + +.+|++++ ++.|++|++.++. .+.....|...|.++ +|+|++++|++ ++.++.++ +|+
T Consensus 74 ~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~-----~~~d~~i~--vwd 145 (357)
T 3i2n_A 74 GA-TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT-----GSRDGTVK--VWD 145 (357)
T ss_dssp TT-CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEE-----EETTSCEE--EEC
T ss_pred cC-CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEE-----EeCCCeEE--EEe
Confidence 99 8 69999988 9999999999887 666666677889998 45789999998 66666655 455
Q ss_pred cCCcc-eeeeeeeccc----ccceeE----EccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005315 386 IPSKE-ELRQKNLFSV----SDCKMY----WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 456 (702)
Q Consensus 386 ~~~~~-~~~~~~~~~~----~~~~~~----~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 456 (702)
+.... .+.....+.. ....+. |+|++.+|+++..++. +.+|++..... .....|...|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~---------i~i~d~~~~~~----~~~~~~~~~v 212 (357)
T 3i2n_A 146 PRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD---------IKLFDLRNMAL----RWETNIKNGV 212 (357)
T ss_dssp TTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSE---------EEEEETTTTEE----EEEEECSSCE
T ss_pred CCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCe---------EEEEECccCce----eeecCCCCce
Confidence 55443 2322221111 223334 7899999999998876 78998875432 2334678999
Q ss_pred eEEEEee---CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEE-EEcCCCceeEEEEccCCC-EEEEEeccCCCceEEE
Q 005315 457 IAFAWEP---KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKL-TTLKGKQANALFWSPSGR-FIVLAGLKGFNGQLEF 531 (702)
Q Consensus 457 ~~~~~sp---~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~-~l~~~~~~~~dg~v~i 531 (702)
.+++|+| ++.+|++++.++ .|++||++++......... ...+...+++++|+|+|+ +|++++. ||.|++
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i 286 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEG---KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG---AGGLHL 286 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTT---EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET---TSEEEE
T ss_pred EEEEcCCCCCCCCEEEEECCCC---eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC---CCcEEE
Confidence 9999999 999999999999 9999999875432222111 112345799999999999 7888887 999999
Q ss_pred EECCCcc-------------------eee--ecccCceeeeEECCCCCEEE-EEEeecccccccEEEEEecc
Q 005315 532 YNVDELE-------------------TMA--TAEHFMATDVEWDPTGRYVA-TAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 532 ~d~~~~~-------------------~~~--~~~~~~i~~~~~spdg~~l~-t~s~~~~~~d~~v~iw~~~g 581 (702)
||+.... .+. ..|...|++++|+|+|++|+ +++. |+.++||++..
T Consensus 287 wd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~-----d~~i~iw~~~~ 353 (357)
T 3i2n_A 287 WKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF-----DQTVRVLIVTK 353 (357)
T ss_dssp EEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET-----TSEEEEEEECC
T ss_pred eecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC-----CCcEEEEECCC
Confidence 9997432 222 35678899999999999998 7888 99999999863
No 81
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=6e-27 Score=241.94 Aligned_cols=270 Identities=13% Similarity=0.234 Sum_probs=209.8
Q ss_pred CC-CeeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-----EEeeccCCCcccccCCCCCCCCcccceEE
Q 005315 243 HP-QVKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-----VMRDFKGSADEFAVGGTGGVAGVSWPVFR 315 (702)
Q Consensus 243 ~~-~v~~i~fSpd-g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 315 (702)
|. .|++|+|+|+ +++||||+.| ++|+|||+.+++ +.+.+.+|...+. ++.
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D----------~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~-------------~~~ 93 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRD----------KTIIMWKLTRDETNYGIPQRALRGHSHFVS-------------DVV 93 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETT----------SCEEEEEECCSSSCSEEEEEEECCCSSCEE-------------EEE
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCC----------CeEEEEECCCCCcccceeeEEEeCCCCCEE-------------EEE
Confidence 44 5999999998 6899999999 999999987653 5677888877764 799
Q ss_pred EcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 316 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 316 ~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
|+| ++++|++++ |+.|++|+............+...+....++|++.+|++ ++.++..++| +..
T Consensus 94 ~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-----~s~d~~~~~~--d~~------- 158 (340)
T 4aow_A 94 ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS-----GSRDKTIKLW--NTL------- 158 (340)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE-----EETTSCEEEE--CTT-------
T ss_pred ECC-CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCcccee-----ecCCCeEEEE--EeC-------
Confidence 999 999999999 999999999877666555555666778888888888887 5566555543 211
Q ss_pred eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCC--cEEEEEE
Q 005315 395 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--HRFAVIH 472 (702)
Q Consensus 395 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--~~l~~~~ 472 (702)
+.. .......+|...+..++|++++ ..+++++
T Consensus 159 ----------------~~~------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 159 ----------------GVC------------------------------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp ----------------SCE------------------------------EEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred ----------------CCc------------------------------eEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 110 0112234678889999998865 4677888
Q ss_pred cCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-cccCcee
Q 005315 473 GDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMAT 549 (702)
Q Consensus 473 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~~i~ 549 (702)
.|+ .|++|+++++. .+..+.+ ..|++++|+|+|++|++++. ||.|++||+.+.+.+.. .++..++
T Consensus 193 ~d~---~i~i~d~~~~~------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~v~ 260 (340)
T 4aow_A 193 WDK---LVKVWNLANCK------LKTNHIGHTGYLNTVTVSPDGSLCASGGK---DGQAMLWDLNEGKHLYTLDGGDIIN 260 (340)
T ss_dssp TTS---CEEEEETTTTE------EEEEECCCSSCEEEEEECTTSSEEEEEET---TCEEEEEETTTTEEEEEEECSSCEE
T ss_pred CCC---EEEEEECCCCc------eeeEecCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEEeccCceeeeecCCceEE
Confidence 888 89999997544 4555554 47999999999999999998 99999999998887765 4457899
Q ss_pred eeEECCCCCEEEEEEeecccccccEEEEEeccceee-e-----------eccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 550 DVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY-R-----------TLKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 550 ~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~-~-----------~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.+.|+|++.++ +++. |+.+++|++.+..+. . .+...|++++|+|++++|++++.|+.|+
T Consensus 261 ~~~~~~~~~~~-~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~ 331 (340)
T 4aow_A 261 ALCFSPNRYWL-CAAT-----GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331 (340)
T ss_dssp EEEECSSSSEE-EEEE-----TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeecCCCCcee-eccC-----CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 99999988655 5556 799999998865332 1 2456899999999999999999887664
No 82
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=3.3e-27 Score=246.39 Aligned_cols=292 Identities=12% Similarity=0.134 Sum_probs=208.8
Q ss_pred cccccccCCC---CCceEEEEeCCceEEEecCCCCCCCcccccC-----CCcccceEEECCC----CcEEEEEeCCc-eE
Q 005315 161 NLQKWLTDEK---ARDQFVIRSGTDTEVLWNDARHLKPEPVYKR-----SYWTESFVQWSPL----GTYLATVHRQG-AA 227 (702)
Q Consensus 161 ~~~~~~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-----~~~~v~~v~~Spd----g~~lat~~~~~-i~ 227 (702)
.+.+..++|. +...+++..+++.+.+|+. ...+....+.. |...+++++|+|+ |++||+++.++ |.
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYEC-HSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEE-CGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEc-CCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 3445555553 6667788888888889998 34444444433 5678999999999 78999999999 88
Q ss_pred EeecCcCcceeeeec-CC-CeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeec---cCCCcccccC
Q 005315 228 VWGGANTFNRLMRYA-HP-QVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF---KGSADEFAVG 301 (702)
Q Consensus 228 iw~~~~~~~~~~~~~-~~-~v~~i~fSp-dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~---~~~~~~~~~~ 301 (702)
+|+.. +.+.+..+. |. .|.+++|+| ++++|++++.+ +.|++||+.+++.+..+ ..|...+.
T Consensus 99 v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~v~-- 165 (366)
T 3k26_A 99 IINPI-TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD----------HALRLWNIQTDTLVAIFGGVEGHRDEVL-- 165 (366)
T ss_dssp EECTT-TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETT----------SCEEEEETTTTEEEEEECSTTSCSSCEE--
T ss_pred EEEch-hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCC----------CeEEEEEeecCeEEEEecccccccCcee--
Confidence 99999 777777774 44 499999999 99999999999 99999999999988887 56666553
Q ss_pred CCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceee----------------------------ccCC
Q 005315 302 GTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL----------------------------KVEN 352 (702)
Q Consensus 302 ~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~----------------------------~~~~ 352 (702)
+++|+| ++++|++++ |+.|++|++.+++.+..... |...
T Consensus 166 -----------~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 166 -----------SADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp -----------EEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred -----------EEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 799999 999999998 99999999998765432221 3344
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccE
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 432 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 432 (702)
|.+++|+ +.+|++ ++.++.+++| +........... .+..
T Consensus 234 v~~~~~~--~~~l~~-----~~~d~~i~~w--d~~~~~~~~~~~-----------~~~~--------------------- 272 (366)
T 3k26_A 234 VDCVRWL--GDLILS-----KSCENAIVCW--KPGKMEDDIDKI-----------KPSE--------------------- 272 (366)
T ss_dssp CCEEEEE--TTEEEE-----ECSSSEEEEE--EESSTTCCGGGC-----------CTTC---------------------
T ss_pred EEEEEEc--CCEEEE-----EecCCEEEEE--eCCCcccccccc-----------ccCC---------------------
Confidence 5555555 345554 3333333332 222211000000 0000
Q ss_pred EEEEEecCCcceeEEEecCCCCceeEEEEeeC--CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC----CCcee
Q 005315 433 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----GKQAN 506 (702)
Q Consensus 433 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~v~ 506 (702)
........+..|...|.+++|+|+ +++|++++.++ .|++|++.++.... .....+. ...++
T Consensus 273 --------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~--~~~~~~~~~~~~~~v~ 339 (366)
T 3k26_A 273 --------SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG---KLYVWDLEVEDPHK--AKCTTLTHHKCGAAIR 339 (366)
T ss_dssp --------CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS---CEEEEECCSSSGGG--CEEEEECCTTCCSCEE
T ss_pred --------cchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC---cEEEEECCCCCCcc--ccceEEcccccCCceE
Confidence 000112345577889999999999 99999999999 99999997654221 1333343 34799
Q ss_pred EEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 507 ALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 507 ~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
+++|+|+|++|++++. ||.|++||+.
T Consensus 340 ~~~~s~~~~~l~s~~~---dg~i~iwd~~ 365 (366)
T 3k26_A 340 QTSFSRDSSILIAVCD---DASIWRWDRL 365 (366)
T ss_dssp EEEECTTSSEEEEEET---TSEEEEEEC-
T ss_pred EEEeCCCCCeEEEEeC---CCEEEEEEec
Confidence 9999999999999998 9999999985
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.2e-28 Score=259.04 Aligned_cols=249 Identities=15% Similarity=0.186 Sum_probs=184.7
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--cEEeeccCCCcccccCCCCCCCCcccceEE
Q 005315 238 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFR 315 (702)
Q Consensus 238 ~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 315 (702)
+..++...|.+++|||+|++|++++.+ +.|+|||+.++ +.+..+.+|...+. +++
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d----------~~i~iw~~~~~~~~~~~~~~~h~~~v~-------------~~~ 62 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTAT----------NQVELYEQDGNGWKHARTFSDHDKIVT-------------CVD 62 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSS----------SCBCEEEEETTEEEECCCBCCCSSCEE-------------EEE
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCC----------CEEEEEEccCCceEEEEEEecCCceEE-------------EEE
Confidence 445556679999999999999999999 99999999988 78888988887764 799
Q ss_pred EcCCCCcEEEEec-CCeEEEEecCCcc---cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcce
Q 005315 316 WGGGKDKYFAKLG-KNMISVYETESFT---LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 391 (702)
Q Consensus 316 ~s~~dg~~la~~~-d~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 391 (702)
|+| ++++|++++ |+.|++|++.++. .......|...|.+++|+|++++|++ ++.++.+++|.++. .+.
T Consensus 63 ~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~d~~i~iwd~~~--~~~ 134 (377)
T 3dwl_C 63 WAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV-----GSGARVISVCYFEQ--END 134 (377)
T ss_dssp ECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEE-----EESSSCEEECCC-------
T ss_pred EeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEE-----EecCCeEEEEEECC--ccc
Confidence 999 999999999 9999999999876 33333446677999999999999888 66666655543221 110
Q ss_pred eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC-CCCceeEEEEeeCCcEEEE
Q 005315 392 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN-KNDKIIAFAWEPKGHRFAV 470 (702)
Q Consensus 392 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~~ 470 (702)
. .....+.. |...|.+++|+|++++|++
T Consensus 135 ~---------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 135 W---------------------------------------------------WVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp C---------------------------------------------------CCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred c---------------------------------------------------eeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 0 00012334 7899999999999999999
Q ss_pred EEcCCCCCeEEEEEeecccCcC------------ceEEEEEc-CCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCc
Q 005315 471 IHGDSPRPDISFYSMRTAQHAG------------RVSKLTTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 537 (702)
Q Consensus 471 ~~~d~~~~~v~i~d~~~~~~~~------------~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~ 537 (702)
++.|+ .|++||+....... ....+..+ +...+++++|+|+|++|++++. ||.|++||+.++
T Consensus 164 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~ 237 (377)
T 3dwl_C 164 GCADR---KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH---DSSVTIAYPSAP 237 (377)
T ss_dssp EESSS---CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET---TTEEC-CEECST
T ss_pred EeCCC---EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC---CCcEEEEECCCC
Confidence 99999 99999996322110 12244444 2236999999999999999998 999999999987
Q ss_pred ce----ee--ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 538 ET----MA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 538 ~~----~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+. +. ..|...+++++|+|+|++|++++. +.+.+|+..
T Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~~~ 280 (377)
T 3dwl_C 238 EQPPRALITVKLSQLPLRSLLWANESAIVAAGYN------YSPILLQGN 280 (377)
T ss_dssp TSCEEECCCEECSSSCEEEEEEEETTEEEEEESS------SSEEEECCC
T ss_pred CCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC------CcEEEEEeC
Confidence 65 33 356678999999999999988865 455577654
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.6e-26 Score=243.30 Aligned_cols=272 Identities=18% Similarity=0.318 Sum_probs=207.8
Q ss_pred eEEEEeCCceEEEecCCCCCCCcccccC-CCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CC-CeeEE
Q 005315 174 QFVIRSGTDTEVLWNDARHLKPEPVYKR-SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLI 249 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i 249 (702)
.+++.+.++.+.+|+. ..++....+.. |...|++++|+|+|++||+++.++ |.+|+.. +...+..+. |. .|.++
T Consensus 105 ~l~~~~~d~~v~lw~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 105 NVVAVALERNVYVWNA-DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE-SQTKLRTMAGHQARVGCL 182 (401)
T ss_dssp SEEEEEETTEEEEEET-TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEE
T ss_pred CEEEEECCCeEEEeeC-CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc-CCeEEEEecCCCCceEEE
Confidence 4566677888889998 45555555544 788999999999999999999999 8899999 777776663 43 59999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec
Q 005315 250 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 328 (702)
Q Consensus 250 ~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~ 328 (702)
+| ++++|++++.+ +.|++||+. .+..+..+..|...+. ++.|+| ++++|++++
T Consensus 183 ~~--~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~s~~ 236 (401)
T 4aez_A 183 SW--NRHVLSSGSRS----------GAIHHHDVRIANHQIGTLQGHSSEVC-------------GLAWRS-DGLQLASGG 236 (401)
T ss_dssp EE--ETTEEEEEETT----------SEEEEEETTSSSCEEEEEECCSSCEE-------------EEEECT-TSSEEEEEE
T ss_pred EE--CCCEEEEEcCC----------CCEEEEecccCcceeeEEcCCCCCee-------------EEEEcC-CCCEEEEEe
Confidence 99 56899999999 999999998 5667888888877764 799999 999999999
Q ss_pred -CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEE
Q 005315 329 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 407 (702)
Q Consensus 329 -d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (702)
|+.|++||+.++..+.....+...|.+++|+|++..+++. +++.....|.+|+..+.+.+.
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~----~~gs~d~~i~i~d~~~~~~~~-------------- 298 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLAT----GGGTMDKQIHFWNAATGARVN-------------- 298 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEE----ECCTTTCEEEEEETTTCCEEE--------------
T ss_pred CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEE----ecCCCCCEEEEEECCCCCEEE--------------
Confidence 9999999999887776666677789999999987655542 332234445555543322110
Q ss_pred ccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEE--cCCCCCeEEEEEe
Q 005315 408 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH--GDSPRPDISFYSM 485 (702)
Q Consensus 408 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~--~d~~~~~v~i~d~ 485 (702)
.+ .|...|.+++|+|+++++++++ .++ .|++|++
T Consensus 299 ----------------------------------------~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg---~i~v~~~ 334 (401)
T 4aez_A 299 ----------------------------------------TV-DAGSQVTSLIWSPHSKEIMSTHGFPDN---NLSIWSY 334 (401)
T ss_dssp ----------------------------------------EE-ECSSCEEEEEECSSSSEEEEEECTTTC---EEEEEEE
T ss_pred ----------------------------------------EE-eCCCcEEEEEECCCCCeEEEEeecCCC---cEEEEec
Confidence 11 2366799999999999999976 577 9999999
Q ss_pred ecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee
Q 005315 486 RTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 542 (702)
Q Consensus 486 ~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~ 542 (702)
.++.. .....+. ...+.+++|+|+|++|++++. ||.|++|++.+++.+..
T Consensus 335 ~~~~~----~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~---dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 335 SSSGL----TKQVDIPAHDTRVLYSALSPDGRILSTAAS---DENLKFWRVYDGDHVKR 386 (401)
T ss_dssp ETTEE----EEEEEEECCSSCCCEEEECTTSSEEEEECT---TSEEEEEECCC------
T ss_pred CCccc----eeEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEECCCCccccc
Confidence 76432 2333343 347999999999999999998 99999999998776653
No 85
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=6.1e-27 Score=247.62 Aligned_cols=288 Identities=11% Similarity=0.116 Sum_probs=212.7
Q ss_pred ccccccCCCCCceEEEEeCCceEEEecCCCCCC------CcccccCCCcccceEEECCC----C---cEEEEEeCCc-eE
Q 005315 162 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLK------PEPVYKRSYWTESFVQWSPL----G---TYLATVHRQG-AA 227 (702)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~------~~~~~~~~~~~v~~v~~Spd----g---~~lat~~~~~-i~ 227 (702)
+.+..++| ..++..+.++.+.+|+.. ... ....+.+|...|++++|+|+ | ++|++++.++ |.
T Consensus 19 i~~~~~~~---~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~ 94 (397)
T 1sq9_A 19 IFSVSACN---SFTVSCSGDGYLKVWDNK-LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 94 (397)
T ss_dssp EEEEEECS---SEEEEEETTSEEEEEESB-CCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred eEEEEecC---CeEEEEcCCCEEEEEECC-CcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEE
Confidence 44444455 567777788899999984 444 56677899999999999999 9 9999999998 88
Q ss_pred EeecCcCcce-----eeee-cC------CCeeEEEec----CCCCE-EEEEcCCCCCCCcCCCccEEEEEEccC------
Q 005315 228 VWGGANTFNR-----LMRY-AH------PQVKLIDFS----PGEKY-LVTYSSHEPSNPRDANRVVINIFDVRT------ 284 (702)
Q Consensus 228 iw~~~~~~~~-----~~~~-~~------~~v~~i~fS----pdg~~-l~t~s~d~~~~~~~~~~~~i~vwd~~~------ 284 (702)
+|+.. +... +..+ .| ..|.+++|+ |++++ |++++.+ +.|++||+.+
T Consensus 95 iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 95 FYRIT-REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK----------GTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEE-ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT----------SCEEEEEEESSSSHHH
T ss_pred EEEcc-CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC----------CcEEEEeCCccccccc
Confidence 99998 5553 4444 34 569999999 99999 9999999 9999999988
Q ss_pred CcEEe-----eccC-------CCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceee---
Q 005315 285 GKVMR-----DFKG-------SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--- 348 (702)
Q Consensus 285 g~~~~-----~~~~-------~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~--- 348 (702)
++.+. .+.+ |...+. +++|+| ++ +|++++ ++.|.+|++.+++.+.....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-------------~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFAT-------------SVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCC-------------EEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred cceeeccCcceeeeeeccccCCCCCce-------------EEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEecccc
Confidence 66665 5532 333332 789999 99 999988 99999999998887776666
Q ss_pred c---cCCeeEEEeCCCCCeEEEEeecCCCCC-CCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccc
Q 005315 349 K---VENVMDFSWSPTDPIISLFVPELGGGN-QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT 424 (702)
Q Consensus 349 ~---~~~v~~~~~sp~~~~la~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~ 424 (702)
| ...|.+++|+|++++|++ ++.+ ....|.+|++.+.+.+....... .+..
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~-----~~~d~~~g~i~i~d~~~~~~~~~~~~~~--------~~~~------------- 282 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAI-----AHDSNSFGCITLYETEFGERIGSLSVPT--------HSSQ------------- 282 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEE-----EEEETTEEEEEEEETTTCCEEEEECBC--------------------------
T ss_pred ccccCCccceEEECCCCCEEEE-----EecCCCCceEEEEECCCCcccceeccCc--------cccc-------------
Confidence 6 778999999999999988 4333 11456666665443222111000 0000
Q ss_pred cccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC---
Q 005315 425 KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--- 501 (702)
Q Consensus 425 ~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--- 501 (702)
..+....|...|.+++|+|++++|++++.|+ .|++||+.++. .+..+.
T Consensus 283 --------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~------~~~~~~~~~ 333 (397)
T 1sq9_A 283 --------------------ASLGEFAHSSWVMSLSFNDSGETLCSAGWDG---KLRFWDVKTKE------RITTLNMHC 333 (397)
T ss_dssp -----------------------CCBSBSSCEEEEEECSSSSEEEEEETTS---EEEEEETTTTE------EEEEEECCG
T ss_pred --------------------ccccccccCCcEEEEEECCCCCEEEEEeCCC---eEEEEEcCCCc------eeEEEeccc
Confidence 0000113788999999999999999999999 99999997654 444444
Q ss_pred --------------------CCceeEEEEccCC----------CEEEEEeccCCCceEEEEECCCc
Q 005315 502 --------------------GKQANALFWSPSG----------RFIVLAGLKGFNGQLEFYNVDEL 537 (702)
Q Consensus 502 --------------------~~~v~~~~~spdg----------~~l~~~~~~~~dg~v~i~d~~~~ 537 (702)
...|++++|+|+| ++|++++. ||.|++|++.++
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~g 396 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL---DRSIRWFREAGG 396 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET---TTEEEEEEEEC-
T ss_pred CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC---CCcEEEEEcCCC
Confidence 4579999999999 79999998 999999999865
No 86
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.6e-28 Score=260.83 Aligned_cols=308 Identities=10% Similarity=0.099 Sum_probs=227.7
Q ss_pred eEEECCCCcEEEEEeCCceEEeecCcCcceeeee--cC-CCeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005315 208 FVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY--AH-PQVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 208 ~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~--~~-~~v~~i~fSp-dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~ 283 (702)
...|+|+|+.+++++ .|+.. ++.+..+ +| ..|.+++|+| ++++||+++.| ++|+|||+.
T Consensus 32 ~~~f~~~~~~~~~~~-----~w~~~--g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d----------g~v~vwd~~ 94 (437)
T 3gre_A 32 YKEFGPIQEIVRSPN-----MGNLR--GKLIATLMENEPNSITSSAVSPGETPYLITGSDQ----------GVIKIWNLK 94 (437)
T ss_dssp CGGGCCCCCCCCCCC-----GGGCC--CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETT----------SEEEEEEHH
T ss_pred hhhcCCccccccccc-----ccccc--ceEEeeeccCCCCceEEEEECCCCCCEEEEecCC----------ceEEEeECc
Confidence 345889998888766 48755 5556555 34 4599999999 99999999999 999999987
Q ss_pred C---CcE---EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecC---CcccccceeeccCCe
Q 005315 284 T---GKV---MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE---SFTLIDKKSLKVENV 353 (702)
Q Consensus 284 ~---g~~---~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~---~~~~~~~~~~~~~~v 353 (702)
+ +.. ...+ .|...+. +++|+| ++++|++++ |+.|++|++. +++.+.....+ .+
T Consensus 95 ~~~~~~~~~~~~~~-~h~~~v~-------------~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i 157 (437)
T 3gre_A 95 EIIVGEVYSSSLTY-DCSSTVT-------------QITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CI 157 (437)
T ss_dssp HHHTTCCCSCSEEE-ECSSCEE-------------EEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EE
T ss_pred ccccCcccceeeec-cCCCCEE-------------EEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--ee
Confidence 6 432 2222 2444442 799999 999999999 9999999995 44443322222 56
Q ss_pred eEEEeCCCC--CeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc
Q 005315 354 MDFSWSPTD--PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 431 (702)
Q Consensus 354 ~~~~~sp~~--~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 431 (702)
..+.|+|++ ..+.. +...+++++.+|++++.++.
T Consensus 158 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~l~~~~~d~~--------- 193 (437)
T 3gre_A 158 RKINLKNFGKNEYAVR-----------------------------------MRAFVNEEKSLLVALTNLSR--------- 193 (437)
T ss_dssp EEEEGGGGSSCCCEEE-----------------------------------EEEEECSSCEEEEEEETTSE---------
T ss_pred EEEEccCcccccCceE-----------------------------------EEEEEcCCCCEEEEEeCCCe---------
Confidence 777777632 22211 11236889999999998877
Q ss_pred EEEEEEecCCcceeEEEecC--CCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC---CCcee
Q 005315 432 FELFRIKERDIPIEVLELDN--KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---GKQAN 506 (702)
Q Consensus 432 ~~l~~l~~~~~~~~~~~l~~--h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~~v~ 506 (702)
+.+|++..... . ..+.+ |...|.+++|+|++++|++++.|+ .|++||++++. .+..+. ..++.
T Consensus 194 i~iwd~~~~~~-~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~------~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 194 VIIFDIRTLER-L--QIIENSPRHGAVSSICIDEECCVLILGTTRG---IIDIWDIRFNV------LIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEETTTCCE-E--EEEECCGGGCCEEEEEECTTSCEEEEEETTS---CEEEEETTTTE------EEEEEBCTTCEEEE
T ss_pred EEEEeCCCCee-e--EEEccCCCCCceEEEEECCCCCEEEEEcCCC---eEEEEEcCCcc------EEEEEecCCCCceE
Confidence 88998865432 2 23334 789999999999999999999999 99999997643 555543 23689
Q ss_pred EEEEc----cCCCEEEEEeccCCCceEEEEECCCcceeeec----------------------------ccCceeeeEEC
Q 005315 507 ALFWS----PSGRFIVLAGLKGFNGQLEFYNVDELETMATA----------------------------EHFMATDVEWD 554 (702)
Q Consensus 507 ~~~~s----pdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~----------------------------~~~~i~~~~~s 554 (702)
+++|+ |+|++|++++. ||.|++||+.+++.+... +...|++++|+
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSS---KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEECTTTCTTEEEEEEEST---TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred EEEeccccCCCccEEEEEcC---CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 99665 46889999988 999999999977654321 34568889999
Q ss_pred CCCCEEEEEEeecccccccEEEEEecc-ceeeee---------------------------------------ccccEee
Q 005315 555 PTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT---------------------------------------LKDHFFQ 594 (702)
Q Consensus 555 pdg~~l~t~s~~~~~~d~~v~iw~~~g-~~l~~~---------------------------------------~~~~i~~ 594 (702)
++++|++++. |+.|++|++.. ..+... |.+.|.+
T Consensus 339 -~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 412 (437)
T 3gre_A 339 -NDKILLTDEA-----TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS 412 (437)
T ss_dssp -TTEEEEEEGG-----GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEE
T ss_pred -CceEEEecCC-----CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceee
Confidence 7899999999 99999999863 222111 5678999
Q ss_pred EEEeeC--CCCCCChhhHHHHH
Q 005315 595 FLWRPR--PPSFLTPEKEEEIA 614 (702)
Q Consensus 595 ~~w~p~--~~~l~s~~~d~~i~ 614 (702)
+.|.++ +..|++++.++.|+
T Consensus 413 i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 413 ISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp EEEEESSSSEEEEEEETTSCEE
T ss_pred EeeeccCCceEEEEEcCCceEE
Confidence 999998 67888988887653
No 87
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=1.8e-26 Score=242.91 Aligned_cols=282 Identities=10% Similarity=0.103 Sum_probs=209.1
Q ss_pred cccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccc--cCCCcccceEEECC-CCcEEEEEeCCc-eEEeecCcCcc
Q 005315 161 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVY--KRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFN 236 (702)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~ 236 (702)
.+.+..++|++...++..+.++.+.+|+.. ..+....+ .+|...|++++|+| ++++|++++.++ |++|+.. +.
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~- 151 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYD-VQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS-GS- 151 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETT-STTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT-SC-
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCC-CcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC-CC-
Confidence 355566677776677888888999999983 44544444 47999999999999 789999999999 8899999 43
Q ss_pred eeeee-c-C---CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCccc
Q 005315 237 RLMRY-A-H---PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 311 (702)
Q Consensus 237 ~~~~~-~-~---~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w 311 (702)
.+..+ . + ..|.+++|+|++++|++++.+ +.|++||+ +++.+..+..|...+.
T Consensus 152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~i~d~-~~~~~~~~~~h~~~v~------------ 208 (383)
T 3ei3_B 152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST----------GRLLLLGL-DGHEIFKEKLHKAKVT------------ 208 (383)
T ss_dssp EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT----------SEEEEEET-TSCEEEEEECSSSCEE------------
T ss_pred ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC----------CCEEEEEC-CCCEEEEeccCCCcEE------------
Confidence 33333 2 2 349999999999999999999 99999998 7888999988887764
Q ss_pred ceEEEcCCCCc-EEEEec-CCeEEEEecCCc----ccccceeeccCCeeEEEeCC-CCCeEEEEeecCCCCCCCcEEEEE
Q 005315 312 PVFRWGGGKDK-YFAKLG-KNMISVYETESF----TLIDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLV 384 (702)
Q Consensus 312 ~~~~~s~~dg~-~la~~~-d~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~ 384 (702)
+++|+| +++ +|++++ |+.|++||+.++ ..+... .|...|.+++|+| ++.+|++ ++.++. |.+|
T Consensus 209 -~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~-----~~~d~~--i~iw 278 (383)
T 3ei3_B 209 -HAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT-----TDQRNE--IRVY 278 (383)
T ss_dssp -EEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE-----EESSSE--EEEE
T ss_pred -EEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE-----EcCCCc--EEEE
Confidence 799999 998 888888 999999999973 333333 4667899999999 9999998 555554 5556
Q ss_pred ecCCcceeeeeeecc------cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeE
Q 005315 385 QIPSKEELRQKNLFS------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA 458 (702)
Q Consensus 385 ~~~~~~~~~~~~~~~------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~ 458 (702)
++.+.+.......+. ...+...|+| .+.+..
T Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------------------------------------------~~~~~~ 315 (383)
T 3ei3_B 279 SSYDWSKPDQIIIHPHRQFQHLTPIKATWHP-------------------------------------------MYDLIV 315 (383)
T ss_dssp ETTBTTSCSEEEECCBCCCTTSCCCCCEECS-------------------------------------------SSSEEE
T ss_pred ECCCCccccccccccccccccccceEEeccC-------------------------------------------CCCceE
Confidence 655444322211110 1111122332 334455
Q ss_pred EEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC----CceeEEEEccCCCEEEEEeccCCCceEEEEEC
Q 005315 459 FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG----KQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 534 (702)
Q Consensus 459 ~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~ 534 (702)
++|+|+|++ +++.|+ .|++||+.++. .+..+.+ ..+..++|+|+|++|++++ ||.|++||+
T Consensus 316 ~~~s~dg~~--s~s~d~---~i~iwd~~~~~------~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s----d~~i~iw~~ 380 (383)
T 3ei3_B 316 AGRYPDDQL--LLNDKR---TIDIYDANSGG------LVHQLRDPNAAGIISLNKFSPTGDVLASGM----GFNILIWNR 380 (383)
T ss_dssp EECBCCTTT--CTTCCC---CEEEEETTTCC------EEEEECBTTBCSCCCEEEECTTSSEEEEEE----TTEEEEEEC
T ss_pred EEecCCccc--ccCCCC---eEEEEecCCCc------eeeeecCCCCCceEEEEEEecCccEEEEec----CCcEEEEec
Confidence 777888877 666677 99999997654 5555543 3467789999999999985 899999998
Q ss_pred CC
Q 005315 535 DE 536 (702)
Q Consensus 535 ~~ 536 (702)
++
T Consensus 381 ~~ 382 (383)
T 3ei3_B 381 ED 382 (383)
T ss_dssp C-
T ss_pred CC
Confidence 73
No 88
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=255.69 Aligned_cols=305 Identities=14% Similarity=0.242 Sum_probs=201.5
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-----------EEeeccCCC------------ccccc
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-----------VMRDFKGSA------------DEFAV 300 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~-----------~~~~~~~~~------------~~~~~ 300 (702)
..|.+++|||+|++||+|+.+ +.|+||++.+++ .+..+.+|. ..+.
T Consensus 29 ~~V~~v~~s~~g~~la~g~~d----------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~- 97 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKG----------GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN- 97 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETT----------SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC-
T ss_pred CcEEEEEECCCCCEEEEEcCC----------CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE-
Confidence 359999999999999999999 999999998877 577888886 3342
Q ss_pred CCCCCCCCcccceEEEcCCCC--cEEEEec-CCeEEEEecCCcccccce---eeccCCeeEEEeCCCCCeEEEEeecCCC
Q 005315 301 GGTGGVAGVSWPVFRWGGGKD--KYFAKLG-KNMISVYETESFTLIDKK---SLKVENVMDFSWSPTDPIISLFVPELGG 374 (702)
Q Consensus 301 ~~~~~~~~~~w~~~~~s~~dg--~~la~~~-d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~ 374 (702)
+++|+| ++ .+|++++ |+.|++|++.++...... ..+.+.+....-. ..-.+....+
T Consensus 98 ------------~l~~~~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~---- 159 (447)
T 3dw8_B 98 ------------KIRWLP-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTV-TTLRVPVFRP---- 159 (447)
T ss_dssp ------------EEEECC-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCC-CSCCCCEEEE----
T ss_pred ------------EEEEcC-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccc-cceEeccccc----
Confidence 789999 88 6788877 999999998865432100 0000000000000 0000000000
Q ss_pred CCCCcEEEEEecCCcceeee-eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEE-----E
Q 005315 375 GNQPARVSLVQIPSKEELRQ-KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVL-----E 448 (702)
Q Consensus 375 ~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~ 448 (702)
.. +..... .... ...+......+.|+|+|++|+++ .++. +.+|++...+.....+ .
T Consensus 160 ----~~-~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~---------i~iwd~~~~~~~~~~~~~~~~~ 221 (447)
T 3dw8_B 160 ----MD-LMVEAS---PRRIFANAHTYHINSISINSDYETYLSA-DDLR---------INLWHLEITDRSFNIVDIKPAN 221 (447)
T ss_dssp ----EE-EEEEEE---EEEEECSCCSSCCCEEEECTTSSEEEEE-CSSE---------EEEEETTEEEEEEEEEECCCSS
T ss_pred ----hh-eeeecc---ceEEeccCCCcceEEEEEcCCCCEEEEe-CCCe---------EEEEECCCCCceeeeeeccccc
Confidence 00 000000 0000 11133445567889998888887 5655 6788776332222222 3
Q ss_pred ecCCCCceeEEEEeeCC-cEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--------------ceeEEEEccC
Q 005315 449 LDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--------------QANALFWSPS 513 (702)
Q Consensus 449 l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--------------~v~~~~~spd 513 (702)
+.+|...|.+++|+|++ ++|++++.|+ .|++||++++..... .+..+..+ .+.+++|+|+
T Consensus 222 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (447)
T 3dw8_B 222 MEELTEVITAAEFHPNSCNTFVYSSSKG---TIRLCDMRASALCDR--HSKLFEEPEDPSNRSFFSEIISSISDVKFSHS 296 (447)
T ss_dssp GGGCCCCEEEEEECSSCTTEEEEEETTS---CEEEEETTTCSSSCT--TCEEECCC-----CCHHHHHTTCEEEEEECTT
T ss_pred ccccCcceEEEEECCCCCcEEEEEeCCC---eEEEEECcCCccccc--eeeEeccCCCccccccccccCceEEEEEECCC
Confidence 55889999999999998 9999999999 999999976542100 12333322 7999999999
Q ss_pred CCEEEEEeccCCCceEEEEECCC-cceeee--cccCc---------------eeeeEECCCCCEEEEEEeecccccccEE
Q 005315 514 GRFIVLAGLKGFNGQLEFYNVDE-LETMAT--AEHFM---------------ATDVEWDPTGRYVATAVTSVHEMENGFN 575 (702)
Q Consensus 514 g~~l~~~~~~~~dg~v~i~d~~~-~~~~~~--~~~~~---------------i~~~~~spdg~~l~t~s~~~~~~d~~v~ 575 (702)
|++|++++ ++.|++||+.. ++.+.. .|... +..++|+|+|++|++++. |+.|+
T Consensus 297 g~~l~~~~----~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-----dg~v~ 367 (447)
T 3dw8_B 297 GRYMMTRD----YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY-----NNFFR 367 (447)
T ss_dssp SSEEEEEE----SSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS-----TTEEE
T ss_pred CCEEEEee----CCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEecc-----CCEEE
Confidence 99999887 58999999986 655543 22211 234999999999999999 99999
Q ss_pred EEEeccceeeee-----------------------------------ccccEeeEEEeeCCCCCCChhh
Q 005315 576 IWSFNGKLLYRT-----------------------------------LKDHFFQFLWRPRPPSFLTPEK 609 (702)
Q Consensus 576 iw~~~g~~l~~~-----------------------------------~~~~i~~~~w~p~~~~l~s~~~ 609 (702)
+|++........ ....+..++|+|++..|++++.
T Consensus 368 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 436 (447)
T 3dw8_B 368 MFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT 436 (447)
T ss_dssp EEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred EEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEec
Confidence 999875432221 1246788999999999987654
No 89
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=8.2e-27 Score=243.37 Aligned_cols=279 Identities=10% Similarity=0.079 Sum_probs=192.3
Q ss_pred ccccccCCCCCceEEEEe-CCc-------eEEEecCCCCCCCc---------ccccCCCcccceEEECCCCcEEEEEeC-
Q 005315 162 LQKWLTDEKARDQFVIRS-GTD-------TEVLWNDARHLKPE---------PVYKRSYWTESFVQWSPLGTYLATVHR- 223 (702)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-~~~-------~~~~w~~~~~~~~~---------~~~~~~~~~v~~v~~Spdg~~lat~~~- 223 (702)
+++..+.|+++ +++++ ++. .+.+|+........ ..+.+|...+.++++ ++..++++..
T Consensus 17 V~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~ 92 (365)
T 4h5i_A 17 AYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNE 92 (365)
T ss_dssp EEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCC
T ss_pred EEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECC
Confidence 44444556554 44444 322 35699874332221 235677777877765 4667777643
Q ss_pred ----------Cc-eEEeecCcCcceeee-----e-c---C-CCeeEEEecCCCCEEEEEc--CCCCCCCcCCCccEEEEE
Q 005315 224 ----------QG-AAVWGGANTFNRLMR-----Y-A---H-PQVKLIDFSPGEKYLVTYS--SHEPSNPRDANRVVINIF 280 (702)
Q Consensus 224 ----------~~-i~iw~~~~~~~~~~~-----~-~---~-~~v~~i~fSpdg~~l~t~s--~d~~~~~~~~~~~~i~vw 280 (702)
++ +++|+.......+.. + . + ..+.+++|||||++|++++ .| ++|+||
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d----------~~i~iw 162 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVP----------AIMRII 162 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS----------CEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC----------CEEEEe
Confidence 34 778887622221111 1 1 1 1288999999999987655 56 899999
Q ss_pred EccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccce--eeccCCeeEEEe
Q 005315 281 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK--SLKVENVMDFSW 358 (702)
Q Consensus 281 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~ 358 (702)
|+.+++++..+..+ ..+. +++||| ||++|++++++.+.+|+..++..+... ..|...|.+++|
T Consensus 163 d~~~~~~~~~~~~~-~~V~-------------~v~fsp-dg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~f 227 (365)
T 4h5i_A 163 DPSDLTEKFEIETR-GEVK-------------DLHFST-DGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINF 227 (365)
T ss_dssp ETTTTEEEEEEECS-SCCC-------------EEEECT-TSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEE
T ss_pred ECCCCcEEEEeCCC-CceE-------------EEEEcc-CCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEE
Confidence 99999999888644 3332 799999 999999999888888888777654332 234456899999
Q ss_pred CCCCCeEEEEeecCCCCCCC--cEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEE
Q 005315 359 SPTDPIISLFVPELGGGNQP--ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFR 436 (702)
Q Consensus 359 sp~~~~la~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~ 436 (702)
+|+++.+++ ++.++. ..++.|+......
T Consensus 228 spdg~~l~~-----~s~d~~~~~~i~~~~~~~~~~--------------------------------------------- 257 (365)
T 4h5i_A 228 IADDTVLIA-----ASLKKGKGIVLTKISIKSGNT--------------------------------------------- 257 (365)
T ss_dssp EETTEEEEE-----EEESSSCCEEEEEEEEETTEE---------------------------------------------
T ss_pred cCCCCEEEE-----EecCCcceeEEeeccccccee---------------------------------------------
Confidence 999998887 333332 2344443221110
Q ss_pred EecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc-CCC--ceeEEEEccC
Q 005315 437 IKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGK--QANALFWSPS 513 (702)
Q Consensus 437 l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~--~v~~~~~spd 513 (702)
.......+.+|...|++++|||+|++||+++.|+ .|+|||++++. ++.++ .+| .|++++||||
T Consensus 258 -----~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~---~V~iwd~~~~~------~~~~~~~gH~~~V~~v~fSpd 323 (365)
T 4h5i_A 258 -----SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN---SIALVKLKDLS------MSKIFKQAHSFAITEVTISPD 323 (365)
T ss_dssp -----EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS---CEEEEETTTTE------EEEEETTSSSSCEEEEEECTT
T ss_pred -----cceeeeeecCCCCCeEeEEECCCCCceEEEcCCC---EEEEEECCCCc------EEEEecCcccCCEEEEEECCC
Confidence 0011133557889999999999999999999999 99999997654 56654 444 7999999999
Q ss_pred CCEEEEEeccCCCceEEEEECCC
Q 005315 514 GRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 514 g~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
|++|++++. |++|+||++..
T Consensus 324 g~~laS~S~---D~tvrvw~ip~ 343 (365)
T 4h5i_A 324 STYVASVSA---ANTIHIIKLPL 343 (365)
T ss_dssp SCEEEEEET---TSEEEEEECCT
T ss_pred CCEEEEEeC---CCeEEEEEcCC
Confidence 999999998 99999999963
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=7.7e-27 Score=238.65 Aligned_cols=242 Identities=18% Similarity=0.272 Sum_probs=184.2
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
...|.+++|+|+|++||+++.| ++|+|||+.++. .+..+.+|...+. +++|++ +
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D----------~~v~lwd~~~~~~~~~~~l~gH~~~V~-------------~v~~~~-~ 68 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSD----------RSVKIFDVRNGGQILIADLRGHEGPVW-------------QVAWAH-P 68 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETT----------TEEEEEEEETTEEEEEEEEECCSSCEE-------------EEEECC-G
T ss_pred cCeEEEeeEcCCCCEEEEEeCC----------CeEEEEEecCCCcEEEEEEcCCCccEE-------------EEEeCC-C
Confidence 3459999999999999999999 999999998875 4678889988763 789986 5
Q ss_pred --CcEEEEec-CCeEEEEecCCccc--ccceeeccCCeeEEEeCCC--CCeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 321 --DKYFAKLG-KNMISVYETESFTL--IDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 321 --g~~la~~~-d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
+++|++++ |++|++||+.++.. +.....|...|.+++|+|+ +.+|++ ++.|+.+++|.+.........
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-----gs~D~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-----GSSDGAISLLTYTGEGQWEVK 143 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-----ECSSSCEEEEEECSSSCEEEC
T ss_pred CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-----EcCCCCEEEEecCCCCCccee
Confidence 78999999 99999999987642 2233346678999999998 778888 778888777655422100000
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC---------
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--------- 464 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--------- 464 (702)
..+.+|...|.+++|+|+
T Consensus 144 -----------------------------------------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 144 -----------------------------------------------------KINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp -----------------------------------------------------CBTTSSSSCBCCCEECCCCCC------
T ss_pred -----------------------------------------------------eeeccccCCcceEEEccccCCcccccc
Confidence 011234445555555554
Q ss_pred --------CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCC----CEEEEEeccCCCceEE
Q 005315 465 --------GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG----RFIVLAGLKGFNGQLE 530 (702)
Q Consensus 465 --------g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg----~~l~~~~~~~~dg~v~ 530 (702)
+++|++++.|+ .|++|+++... ....+..+.+| .|.+++|+|++ ++|++++. ||.|+
T Consensus 171 ~~~~~~~~~~~l~sgs~D~---~v~lWd~~~~~---~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~---D~~v~ 241 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDN---LIKLWKEEEDG---QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ---DGRVF 241 (316)
T ss_dssp CCSCCCCCCCBEECCBTTS---BCCEEEECTTS---CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET---TCEEE
T ss_pred ccccCccccceEEEecCCC---eEEEEEeCCCC---ccceeeecccCCCceEEEEecCCCCCCCceEEEEcC---CCeEE
Confidence 57899999999 99999996432 12355566655 69999999987 88999998 99999
Q ss_pred EEECCCcc------eeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 531 FYNVDELE------TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 531 i~d~~~~~------~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+|++.+.. .+...+...|.+++|+|+|++||+++. |+.++||+..
T Consensus 242 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~-----D~~v~lw~~~ 292 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG-----DNKVTLWKES 292 (316)
T ss_dssp EEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES-----SSCEEEEEEC
T ss_pred EEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC-----CCeEEEEEEC
Confidence 99997521 122345678999999999999999999 9999999975
No 91
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=8.5e-27 Score=243.36 Aligned_cols=295 Identities=13% Similarity=0.155 Sum_probs=206.9
Q ss_pred CCCCCcccccCCCcccceEEECCC---CcEEEEEeCCc-eEEeecCcCccee-eee-cCC-CeeEEEecCCCCEEEEEcC
Q 005315 191 RHLKPEPVYKRSYWTESFVQWSPL---GTYLATVHRQG-AAVWGGANTFNRL-MRY-AHP-QVKLIDFSPGEKYLVTYSS 263 (702)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~v~~Spd---g~~lat~~~~~-i~iw~~~~~~~~~-~~~-~~~-~v~~i~fSpdg~~l~t~s~ 263 (702)
...++...+.+|...|++++|+|+ |++||+++.++ |+||+.......+ ..+ .|. .|.+++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 456667788999999999999999 69999999999 8899998324443 333 344 5999999999999999999
Q ss_pred CCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEE--cCCCCcEEEEec-CCeEEEEecCCc
Q 005315 264 HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW--GGGKDKYFAKLG-KNMISVYETESF 340 (702)
Q Consensus 264 d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--s~~dg~~la~~~-d~~i~v~d~~~~ 340 (702)
+ +.|++||+.+++.+.. ..|...+. ++.| ++ ++++|++++ |+.|++||+.++
T Consensus 107 d----------g~v~iwd~~~~~~~~~-~~~~~~v~-------------~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 107 D----------KTAKMWDLSSNQAIQI-AQHDAPVK-------------TIHWIKAP-NYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp T----------SEEEEEETTTTEEEEE-EECSSCEE-------------EEEEEECS-SCEEEEEEETTSEEEEECSSCS
T ss_pred C----------CcEEEEEcCCCCceee-ccccCceE-------------EEEEEeCC-CCCEEEEccCCCcEEEEECCCC
Confidence 9 9999999999887764 44555542 7889 99 999999998 999999999988
Q ss_pred ccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee--cccccceeEEccCC--CEEEE
Q 005315 341 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL--FSVSDCKMYWQSSG--DYLAV 416 (702)
Q Consensus 341 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g--~~l~~ 416 (702)
+.+.....+ ..+.++.+.++ .+++ ++.++.+.+|.++............ .......+.+.... ..+++
T Consensus 162 ~~~~~~~~~-~~~~~~~~~~~--~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 162 NPMMVLQLP-ERCYCADVIYP--MAVV-----ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp SCSEEEECS-SCEEEEEEETT--EEEE-----EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred cEEEEEecC-CCceEEEecCC--eeEE-----EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 877555433 34566666543 5555 3355555554443222111111111 11222222232222 22888
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCC------------ceeEEEEeeCCcEEEEEEcCCCCCeEEEEE
Q 005315 417 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND------------KIIAFAWEPKGHRFAVIHGDSPRPDISFYS 484 (702)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~------------~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 484 (702)
++.++. +.+|++...........+.+|.. .|.+++|+|++++|++++.|+ .|++||
T Consensus 234 ~~~dg~---------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd 301 (368)
T 3mmy_A 234 GSIEGR---------VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG---RFSFWD 301 (368)
T ss_dssp EETTSE---------EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS---CEEEEE
T ss_pred ecCCCc---------EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC---eEEEEE
Confidence 887766 78998876543223334445554 799999999999999999999 999999
Q ss_pred eecccCcCceEEEEEcCC--CceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 485 MRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
+.++. .+..+.. ..+.+++|+|+|++|++++.......+.+|+...
T Consensus 302 ~~~~~------~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~ 349 (368)
T 3mmy_A 302 KDART------KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK 349 (368)
T ss_dssp TTTTE------EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred CCCCc------EEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCCc
Confidence 97654 5666664 4799999999999999998722223344454443
No 92
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.4e-26 Score=241.05 Aligned_cols=254 Identities=14% Similarity=0.153 Sum_probs=199.1
Q ss_pred CCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCc-Ccceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCC
Q 005315 194 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPS 267 (702)
Q Consensus 194 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~~~~~-~~~-~v~~i~fSpd--g~~l~t~s~d~~~ 267 (702)
++...+.+|...|++++|||+|++||+++.++ |+||+..+ +...+..+ .|. .|.+++|+|+ +++|++++.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d--- 78 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD--- 78 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT---
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC---
Confidence 45567889999999999999999999999998 88999862 23344444 244 5999999988 9999999999
Q ss_pred CCcCCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCcccceEEEcCCC--CcEEEEec-CCeEEEEecCCccc
Q 005315 268 NPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTL 342 (702)
Q Consensus 268 ~~~~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d--g~~la~~~-d~~i~v~d~~~~~~ 342 (702)
+.|+|||+.+++ .+..+..|...+. +++|+| + +.+|++++ ++.|++|++.+...
T Consensus 79 -------g~v~iwd~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 79 -------GKVLIWKEENGRWSQIAVHAVHSASVN-------------SVQWAP-HEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp -------SCEEEEEEETTEEEEEEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred -------CEEEEEEcCCCceeEeeeecCCCcceE-------------EEEeCC-CCCCCEEEEecCCCcEEEEecCCCCc
Confidence 999999999987 7777777776653 799999 9 89999998 99999999987744
Q ss_pred ccc--eeeccCCeeEEEeCC-------------CCCeEEEEeecCCCCCCCcEEEEEecCCcc--eeeeeeeccccccee
Q 005315 343 IDK--KSLKVENVMDFSWSP-------------TDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKM 405 (702)
Q Consensus 343 ~~~--~~~~~~~v~~~~~sp-------------~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~ 405 (702)
... ...+...|.+++|+| ++.+|++ ++.++.+++|.+...... .......+......+
T Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-----GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212 (379)
T ss_dssp CCEEEEECCTTCEEEEEECCCC----------CTTCEEEE-----EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEE-----EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence 332 234666799999999 6889988 777887777766544322 222333345556678
Q ss_pred EEccC---CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe--cCCCCceeEEEEeeCCcEEEEEEcCCCCCeE
Q 005315 406 YWQSS---GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL--DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 480 (702)
Q Consensus 406 ~~s~~---g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 480 (702)
.|+|+ +.+|++++.++. +.+|++.....+.....+ ..|...|.+++|+|+|++|++++.|+ .|
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~---------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i 280 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRT---------CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KV 280 (379)
T ss_dssp EECCCCSSSEEEEEEETTSC---------EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS---SE
T ss_pred EECCCCCCCCeEEEEeCCCE---------EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC---cE
Confidence 99999 899999998877 899999875433332333 34788999999999999999999999 99
Q ss_pred EEEEeecc
Q 005315 481 SFYSMRTA 488 (702)
Q Consensus 481 ~i~d~~~~ 488 (702)
++|++...
T Consensus 281 ~iw~~~~~ 288 (379)
T 3jrp_A 281 TLWKENLE 288 (379)
T ss_dssp EEEEEEET
T ss_pred EEEeCCCC
Confidence 99999754
No 93
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=7.3e-26 Score=244.82 Aligned_cols=295 Identities=13% Similarity=0.202 Sum_probs=227.4
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
+.++.| ++++|++++.| ++|++||+.+++.+..+.+|...+. +++|++ ++ +|+
T Consensus 125 ~~~~~~--~~~~l~sgs~d----------g~i~vwd~~~~~~~~~~~~h~~~V~-------------~l~~~~-~~-~l~ 177 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADD----------KMIRVYDSINKKFLLQLSGHDGGVW-------------ALKYAH-GG-ILV 177 (464)
T ss_dssp EEEEEE--ETTEEEEEETT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEECS-TT-EEE
T ss_pred EEEEEE--CCCEEEEEcCC----------CcEEEEECCCCcEEEEEeCCCcCEE-------------EEEEcC-CC-EEE
Confidence 466555 67899999999 9999999999999999999988774 799999 88 777
Q ss_pred Eec-CCeEEEEecCCcccccceeeccCCeeEEEeC--CCCCeEEEEeecCCCCCCCcEEEEEecCCcceee---------
Q 005315 326 KLG-KNMISVYETESFTLIDKKSLKVENVMDFSWS--PTDPIISLFVPELGGGNQPARVSLVQIPSKEELR--------- 393 (702)
Q Consensus 326 ~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s--p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--------- 393 (702)
+++ |++|++|++.+++.+.....|...|.+++|+ |++++|++ ++.++.+++|.+.........
T Consensus 178 s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s-----~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT-----GSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEE-----EETTSCEEEEECCCCCCC------CCSSEE
T ss_pred EEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEE-----EcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 777 9999999999998877777788889999998 57788888 777777776655432211000
Q ss_pred ----------eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee
Q 005315 394 ----------QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 463 (702)
Q Consensus 394 ----------~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 463 (702)
...+.........+++++.++++++.++. +.+|++.... ....+.+|...|.+++|+|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~---------i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT---------LIVWDVAQMK---CLYILSGHTDRIYSTIYDH 320 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSC---------EEEEETTTTE---EEEEECCCSSCEEEEEEET
T ss_pred eeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCe---------EEEEECCCCc---EEEEecCCCCCEEEEEEcC
Confidence 00111111112245788999999998877 8899886432 2345678999999999999
Q ss_pred CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceee
Q 005315 464 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 541 (702)
Q Consensus 464 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~ 541 (702)
+++++++++.|+ .|++||++++. .+..+.++ .+.+++|+ +++|++++. ||.|++||+.++....
T Consensus 321 ~~~~l~sg~~dg---~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~--~~~l~s~s~---dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 321 ERKRCISASMDT---TIRIWDLENGE------LMYTLQGHTALVGLLRLS--DKFLVSAAA---DGSIRGWDANDYSRKF 386 (464)
T ss_dssp TTTEEEEEETTS---CEEEEETTTTE------EEEEECCCSSCEEEEEEC--SSEEEEEET---TSEEEEEETTTCCEEE
T ss_pred CCCEEEEEeCCC---cEEEEECCCCc------EEEEEeCCCCcEEEEEEc--CCEEEEEeC---CCcEEEEECCCCceee
Confidence 999999999999 99999997654 56666554 68888887 579999998 9999999999877666
Q ss_pred ec-ccCceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeee---eccccEeeEEEeeCCCCCCC
Q 005315 542 TA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR---TLKDHFFQFLWRPRPPSFLT 606 (702)
Q Consensus 542 ~~-~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~---~~~~~i~~~~w~p~~~~l~s 606 (702)
.. +...+..++|+|+|++|++++. +.+++|++. |+.+.. .+...+++++|+ +..++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~l~~~~d------g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~ 448 (464)
T 3v7d_B 387 SYHHTNLSAITTFYVSDNILVSGSE------NQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVA 448 (464)
T ss_dssp EEECTTCCCEEEEEECSSEEEEEET------TEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEE
T ss_pred eecCCCCccEEEEEeCCCEEEEecC------CeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEE
Confidence 54 4466778899999999888764 899999987 555543 255789999997 444443
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=1.5e-25 Score=238.89 Aligned_cols=275 Identities=20% Similarity=0.319 Sum_probs=204.9
Q ss_pred cccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccc--cCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcce
Q 005315 161 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVY--KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR 237 (702)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~ 237 (702)
++.+|-. ...++++ .++++.+|+. .+++....+ .+|...|++|+|||+|++||+|+.++ |+||++. +++.
T Consensus 109 ~~l~wS~----~n~lAvg-ld~tV~lWd~-~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~-~~~~ 181 (420)
T 4gga_A 109 NLVDWSS----GNVLAVA-LDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKR 181 (420)
T ss_dssp BCEEECT----TSEEEEE-ETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEE
T ss_pred eeEEECC----CCEEEEE-eCCEEEEEEC-CCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC-CCcE
Confidence 4556642 2344444 4788889998 566655544 57778899999999999999999999 8899999 8887
Q ss_pred eeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-cEEeeccCCCcccccCCCCCCCCcccceE
Q 005315 238 LMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 238 ~~~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 314 (702)
+..+. |. .+.++++ ++.+|++++.+ +.+++||.... ..+..+.+|...+. .+
T Consensus 182 ~~~~~~h~~~v~~~s~--~~~~l~sgs~d----------~~i~~~d~~~~~~~~~~~~~h~~~~~-------------~~ 236 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW--NSYILSSGSRS----------GHIHHHDVRVAEHHVATLSGHSQEVC-------------GL 236 (420)
T ss_dssp EEEECCCSSCEEEEEE--ETTEEEEEETT----------SEEEEEETTSSSCEEEEEECCSSCEE-------------EE
T ss_pred EEEEeCCCCceEEEee--CCCEEEEEeCC----------CceeEeeecccceeeEEeccccccee-------------ee
Confidence 77774 33 3666555 67899999999 99999998764 45677888877653 78
Q ss_pred EEcCCCCcEEEEec-CCeEEEEecCCcccc----cceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 315 RWGGGKDKYFAKLG-KNMISVYETESFTLI----DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 315 ~~s~~dg~~la~~~-d~~i~v~d~~~~~~~----~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
.|+| +++++++++ |+.+.+|+..+++.. .....+...|..++|+|.+..+++... ++.|+.+ .+|++.+.
T Consensus 237 ~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~--gs~D~~I--~iwd~~t~ 311 (420)
T 4gga_A 237 RWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--GTSDRHI--RIWNVCSG 311 (420)
T ss_dssp EECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE--CTTTCEE--EEEETTTT
T ss_pred eecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe--ecCCCEE--EEEeCCcc
Confidence 9999 999999999 999999999876532 223345667999999998765543211 2244444 44444322
Q ss_pred ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEE
Q 005315 390 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 469 (702)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 469 (702)
+.+. .+ .+...+.++.|+|+++.++
T Consensus 312 ~~~~------------------------------------------------------~~-~~~~~v~~~~~~~~~~~lv 336 (420)
T 4gga_A 312 ACLS------------------------------------------------------AV-DAHSQVCSILWSPHYKELI 336 (420)
T ss_dssp EEEE------------------------------------------------------EE-ECSSCEEEEEEETTTTEEE
T ss_pred ccce------------------------------------------------------ee-ccccceeeeeecCCCCeEE
Confidence 1110 01 1256788999999999999
Q ss_pred EEEc--CCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce
Q 005315 470 VIHG--DSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 539 (702)
Q Consensus 470 ~~~~--d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~ 539 (702)
++++ |+ .|+|||+.++. ++.++.+| .|++++|||+|++|++++. |++|+|||+.....
T Consensus 337 ~~sg~~d~---~I~iwd~~~~~------~v~~l~gH~~~V~~l~~spdg~~l~S~s~---D~tvriWdv~~~~~ 398 (420)
T 4gga_A 337 SGHGFAQN---QLVIWKYPTMA------KVAELKGHTSRVLSLTMSPDGATVASAAA---DETLRLWRCFELDP 398 (420)
T ss_dssp EEECTTTC---CEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSCEEEEET---TTEEEEECCSCSSC
T ss_pred EEEecCCC---EEEEEECCCCc------EEEEEcCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEECCCCCc
Confidence 8874 56 89999997654 67777765 6999999999999999998 99999999975443
No 95
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-26 Score=245.73 Aligned_cols=294 Identities=9% Similarity=0.036 Sum_probs=212.3
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
.+|.+++|||||++|||++.| ++|+ |...++ .+.+|...+ | +++|+| +|
T Consensus 16 ~~v~sv~~SpDG~~iASas~D----------~TV~--d~~~~~---~l~gh~~~v------------~-~V~FsP-dg-- 64 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPD----------ISIG--QPKYAK---DINCNSKNL------------F-HVKEFP-LE-- 64 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSS----------EEEE--EECCCS---CCSSBGGGT------------E-EEEEEC-CC--
T ss_pred ccEEEEEECCCCCEEEEEcCC----------ceee--cccccc---eecCCCccE------------E-EEEECC-CC--
Confidence 459999999999999999999 9998 755554 446776665 4 799999 98
Q ss_pred EEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc---
Q 005315 324 FAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV--- 400 (702)
Q Consensus 324 la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--- 400 (702)
.++.+.+|+......+. . .+.+.|.+++|||+|+.||+ ++.++.+++|. ... .+.... +..
T Consensus 65 ----~~~~~~~~~~~~~~~~~-~-~~~~~V~~vawSPdG~~LAs-----~s~dg~V~iwd--~~~--~l~~l~-~~~~~~ 128 (588)
T 2j04_A 65 ----FENKLDFELAQQNGLLN-S-QPVCYPRVCKPSPIDDWMAV-----LSNNGNVSVFK--DNK--MLTNLD-SKGNLS 128 (588)
T ss_dssp ----CCCTTTTSCCCSSCSST-T-SCSCCEEEEEECSSSSCEEE-----EETTSCEEEEE--TTE--EEEECC-CSSCST
T ss_pred ----CcceEEEEeCCCceEee-c-CCCCcEEEEEECCCCCEEEE-----EeCCCcEEEEe--CCc--eeeecc-CCCccc
Confidence 45555555544322222 1 23567999999999999999 77888877765 222 222212 221
Q ss_pred --ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCc--c--eeEEEe----cCCCCceeEEEEeeCCcEEEE
Q 005315 401 --SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI--P--IEVLEL----DNKNDKIIAFAWEPKGHRFAV 470 (702)
Q Consensus 401 --~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~--~~~~~l----~~h~~~v~~~~~sp~g~~l~~ 470 (702)
....++|||+|++|++++.+++ +.+|++..... + +....+ .+|...|.+++|+|+| +++
T Consensus 129 ~~sv~svafSPDG~~LAsgs~DGt---------VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa 197 (588)
T 2j04_A 129 SRTYHCFEWNPIESSIVVGNEDGE---------LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA 197 (588)
T ss_dssp TTCEEEEEECSSSSCEEEEETTSE---------EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE
T ss_pred cccEEEEEEcCCCCEEEEEcCCCE---------EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE
Confidence 3456899999999999999988 89999987542 1 112333 5788899999999999 788
Q ss_pred EEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce-eee-cccCce
Q 005315 471 IHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-MAT-AEHFMA 548 (702)
Q Consensus 471 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~-~~~-~~~~~i 548 (702)
++.|+ .|++|++.++........+...+...|.+++|+ |+.|++++ ++.|++||+.+++. ... +|...+
T Consensus 198 ss~D~---tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~----~~tIkLWd~~~~~~~~~~~gh~~~V 268 (588)
T 2j04_A 198 ALSNN---SVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC----PGYVHKIDLKNYSISSLKTGSLENF 268 (588)
T ss_dssp EETTC---CEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC----SSEEEEEETTTTEEEEEECSCCSCC
T ss_pred EeCCC---eEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe----CCeEEEEECCCCeEEEEEcCCCceE
Confidence 88888 999999976442100011222233469999999 68898886 68999999998777 444 677899
Q ss_pred eeeEE--CCCCCEEEEEEeecccccccEEEEEec------------------------cceeeee-ccccEeeEEEeeCC
Q 005315 549 TDVEW--DPTGRYVATAVTSVHEMENGFNIWSFN------------------------GKLLYRT-LKDHFFQFLWRPRP 601 (702)
Q Consensus 549 ~~~~~--spdg~~l~t~s~~~~~~d~~v~iw~~~------------------------g~~l~~~-~~~~i~~~~w~p~~ 601 (702)
.+++| +|||..|++++. +|. ++|.++ |+.+... ....|++++++|+|
T Consensus 269 ~~va~~~s~d~~~La~a~e-----dG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG 342 (588)
T 2j04_A 269 HIIPLNHEKESTILLMSNK-----TSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDG 342 (588)
T ss_dssp CEEEETTCSSCEEEEECSS-----CEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTS
T ss_pred EEEEeeeCCCCCEEEEEcC-----CCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCC
Confidence 99999 999999999997 677 777752 1111111 11248889999999
Q ss_pred CCCCChhhH
Q 005315 602 PSFLTPEKE 610 (702)
Q Consensus 602 ~~l~s~~~d 610 (702)
+.+++++.-
T Consensus 343 ~~lA~~~~i 351 (588)
T 2j04_A 343 YSIAIVYDM 351 (588)
T ss_dssp SEEEEEEEE
T ss_pred CEEEEEEec
Confidence 999988754
No 96
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5e-26 Score=238.68 Aligned_cols=244 Identities=16% Similarity=0.295 Sum_probs=192.1
Q ss_pred ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--CCcEEeeccCCCcccccCCCCCCCCcccceEEEcC
Q 005315 241 YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 318 (702)
Q Consensus 241 ~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~ 318 (702)
.|...|.+++|+|++++|++++.+ +.|+|||+. +++.+..+.+|...+. +++|++
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~h~~~v~-------------~~~~~~ 65 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSD----------KTIKIFEVEGETHKLIDTLTGHEGPVW-------------RVDWAH 65 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETT----------SCEEEEEEETTEEEEEEEECCCSSCEE-------------EEEECC
T ss_pred CCcccEEEEEEcCCCCEEEEEECC----------CcEEEEecCCCcceeeeEecCCCCcEE-------------EEEeCC
Confidence 344569999999999999999999 999999998 6677888988887764 789998
Q ss_pred CC--CcEEEEec-CCeEEEEecCCcc--cccceeeccCCeeEEEeCCC--CCeEEEEeecCCCCCCCcEEEEEecCCcce
Q 005315 319 GK--DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEE 391 (702)
Q Consensus 319 ~d--g~~la~~~-d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 391 (702)
+ +++|++++ |+.|++|++.+++ .+.....|...|.+++|+|+ +.+|++ ++.++.+++|.+. ...
T Consensus 66 -~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~d~~i~v~d~~--~~~- 136 (379)
T 3jrp_A 66 -PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-----ASSDGKVSVVEFK--ENG- 136 (379)
T ss_dssp -GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-----EETTSEEEEEECC--TTS-
T ss_pred -CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEE-----ecCCCcEEEEecC--CCC-
Confidence 7 89999999 9999999999876 44444456677999999998 888887 5555554444322 110
Q ss_pred eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee--------
Q 005315 392 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-------- 463 (702)
Q Consensus 392 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-------- 463 (702)
. .....+..|...|.+++|+|
T Consensus 137 --------------------------------------------------~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 137 --------------------------------------------------T-TSPIIIDAHAIGVNSASWAPATIEEDGE 165 (379)
T ss_dssp --------------------------------------------------C-CCEEEEECCTTCEEEEEECCCC------
T ss_pred --------------------------------------------------c-eeeEEecCCCCceEEEEEcCcccccccc
Confidence 0 01122346788999999999
Q ss_pred -----CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEEEEccC---CCEEEEEeccCCCceEEEEE
Q 005315 464 -----KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPS---GRFIVLAGLKGFNGQLEFYN 533 (702)
Q Consensus 464 -----~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spd---g~~l~~~~~~~~dg~v~i~d 533 (702)
++.+|++++.|+ .|++||++++... ...+..+.. ..+.+++|+|+ +++|++++. ||.|++||
T Consensus 166 ~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~---dg~i~iwd 237 (379)
T 3jrp_A 166 HNGTKESRKFVTGGADN---LVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ---DRTCIIWT 237 (379)
T ss_dssp ----CTTCEEEEEETTS---CEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET---TSCEEEEE
T ss_pred ccCCCCCCEEEEEeCCC---eEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC---CCEEEEEe
Confidence 699999999999 9999999865422 234445554 47999999999 899999998 99999999
Q ss_pred CCCcc-----eeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 534 VDELE-----TMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 534 ~~~~~-----~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+.++. .+.. .+...+++++|+|+|++|++++. |+.+++|++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----dg~i~iw~~~ 286 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-----DNKVTLWKEN 286 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-----SSSEEEEEEE
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-----CCcEEEEeCC
Confidence 99753 2222 35678999999999999999999 9999999987
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-25 Score=241.00 Aligned_cols=278 Identities=11% Similarity=0.046 Sum_probs=205.3
Q ss_pred cccceEEECCCCcEEEEEeCCceEEeecCcCcc---eeeeecC-------------------------------------
Q 005315 204 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFN---RLMRYAH------------------------------------- 243 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~---~~~~~~~------------------------------------- 243 (702)
.++.+++|||+|++|+++..+.|.+|++. +++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQ-SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEE-TTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECC-CCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 47889999999998888877779999988 666 4433321
Q ss_pred ------------------C-CeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEcc--CCcEEeeccC--CCcccc
Q 005315 244 ------------------P-QVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKG--SADEFA 299 (702)
Q Consensus 244 ------------------~-~v~~i~fSpdg~~l-~t~s~d~~~~~~~~~~~~i~vwd~~--~g~~~~~~~~--~~~~~~ 299 (702)
. .|.+++|||+|++| ++++.+ +.|+|||+. +++.+..+.. +...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~v~ 153 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD----------KSLLVFDVDKTSKNVLKLRKRFCFSKRPN 153 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGG----------TEEEEEEECSSSSSCEEEEEEEECSSCEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC----------CeEEEEECcCCCCceeeeeecccCCCCce
Confidence 1 49999999999996 899888 999999998 8888888763 333332
Q ss_pred cCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccc----ceeeccCCeeEEEeCCC---CCeEEEEeec
Q 005315 300 VGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID----KKSLKVENVMDFSWSPT---DPIISLFVPE 371 (702)
Q Consensus 300 ~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~----~~~~~~~~v~~~~~sp~---~~~la~~~~~ 371 (702)
+++|+| ++++|++++ ++.|.+|++.++.... ....|...|.+++|+|+ +++|++
T Consensus 154 -------------~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s---- 215 (450)
T 2vdu_B 154 -------------AISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT---- 215 (450)
T ss_dssp -------------EEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE----
T ss_pred -------------EEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE----
Confidence 789999 999999998 8999999998776543 44557778999999998 888887
Q ss_pred CCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC
Q 005315 372 LGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN 451 (702)
Q Consensus 372 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 451 (702)
++.++.+++|.+ .+.+.+ ...+.+
T Consensus 216 -~~~d~~i~vwd~--~~~~~~-----------------------------------------------------~~~~~~ 239 (450)
T 2vdu_B 216 -SDRDEHIKISHY--PQCFIV-----------------------------------------------------DKWLFG 239 (450)
T ss_dssp -EETTSCEEEEEE--SCTTCE-----------------------------------------------------EEECCC
T ss_pred -EcCCCcEEEEEC--CCCcee-----------------------------------------------------eeeecC
Confidence 556665554432 211100 011336
Q ss_pred CCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC---------------------------CCc
Q 005315 452 KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---------------------------GKQ 504 (702)
Q Consensus 452 h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---------------------------~~~ 504 (702)
|...|.+++|+ ++++|++++.|+ .|++||+.++. .+..+. ...
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~---~v~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDD---KIFAWDWKTGK------NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSS---EEEEEETTTCC------EEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred CCCceEEEEEC-CCCEEEEEeCCC---eEEEEECCCCc------EeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 78999999999 999999999999 99999997654 233222 135
Q ss_pred eeEEEEccCCCEEEEEe-ccCCCceEEEEEC--CCc---ceeee-cccCceeeeEECCCCCEEEEEEeecc--cccccEE
Q 005315 505 ANALFWSPSGRFIVLAG-LKGFNGQLEFYNV--DEL---ETMAT-AEHFMATDVEWDPTGRYVATAVTSVH--EMENGFN 575 (702)
Q Consensus 505 v~~~~~spdg~~l~~~~-~~~~dg~v~i~d~--~~~---~~~~~-~~~~~i~~~~~spdg~~l~t~s~~~~--~~d~~v~ 575 (702)
+..++|+|+|++|++++ . ++.|++|++ .+. +.+.. ..+..+.+++|+|++ .+++.+.... ..++.+.
T Consensus 310 v~~i~~~~~~~~l~~~~~~---d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~ 385 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEA---TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE-FQVTLDNKESSGVQKNFAK 385 (450)
T ss_dssp EEEEEECSSSSEEEEEETT---CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE-EEEEECCTTCCSSCCCSEE
T ss_pred EEEEEEeCCCCEEEEEECC---CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc-EEEEEecccCCCCCCcceE
Confidence 78999999999999988 5 899999999 444 33333 223789999999964 4444433100 0145688
Q ss_pred EEEec
Q 005315 576 IWSFN 580 (702)
Q Consensus 576 iw~~~ 580 (702)
+|.+.
T Consensus 386 v~~~~ 390 (450)
T 2vdu_B 386 FIEYN 390 (450)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
No 98
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.5e-26 Score=247.78 Aligned_cols=290 Identities=10% Similarity=0.049 Sum_probs=198.7
Q ss_pred ccccccCCCCCceEEEEeCCceEEEecCCCCC-CCcccccCCCcccceEEECC-CCcEEEEEeCCc-eEEeecCcCccee
Q 005315 162 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHL-KPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRL 238 (702)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~ 238 (702)
+.+..++|.....+++++.++.+.+|+..... .....+.+|...|++|+|+| +|.+|++++.|+ |+|||+. +....
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~-~~~~~ 200 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNILR 200 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT-SCEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc-CCcee
Confidence 44555677666677888889999999984322 23345678999999999998 789999999999 8899998 44332
Q ss_pred eee-cCC---CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceE
Q 005315 239 MRY-AHP---QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 239 ~~~-~~~---~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 314 (702)
... ++. .+.+++|+|++++|++|+.+ +.|++||+ .++.+..+.+|...+. ++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d----------g~i~~wd~-~~~~~~~~~~h~~~v~-------------~v 256 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNV----------GNVILLNM-DGKELWNLRMHKKKVT-------------HV 256 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSS----------SBEEEEES-SSCBCCCSBCCSSCEE-------------EE
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCC----------CcEeeecc-CcceeEEEecccceEE-------------ee
Confidence 222 222 37899999999999999999 99999997 5677888888887764 79
Q ss_pred EEcCCCCc-EEEEec-CCeEEEEecCCcccccce---eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 315 RWGGGKDK-YFAKLG-KNMISVYETESFTLIDKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 315 ~~s~~dg~-~la~~~-d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
+|+| ++. +|++++ |+.|+|||+.+....... ..|...|.+++|+|+|++|++ ++.|+.++|| +..+.
T Consensus 257 ~~~p-~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s-----~~~D~~i~iw--d~~~~ 328 (435)
T 4e54_B 257 ALNP-CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT-----TDQKSEIRVY--SASQW 328 (435)
T ss_dssp EECT-TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE-----EESSSCEEEE--ESSSS
T ss_pred eecC-CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE-----EcCCCEEEEE--ECCCC
Confidence 9999 876 677777 999999999876544322 346678999999999999998 6677776655 44433
Q ss_pred ceeeeeeec------ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee
Q 005315 390 EELRQKNLF------SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 463 (702)
Q Consensus 390 ~~~~~~~~~------~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 463 (702)
........+ ........|+|++..+ .+.+++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~ 365 (435)
T 4e54_B 329 DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI-------------------------------------------VVGRYP 365 (435)
T ss_dssp SSEEEECCCCCCCCSSSCCCBCEECSSSSCE-------------------------------------------EEECCC
T ss_pred ccceEEecccccccccceeEEEEEcCCCCEE-------------------------------------------EEEEcC
Confidence 322111100 0111112233322222 222333
Q ss_pred CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC---CCceeEE-EEccCCCEEEEEeccCCCceEEEEECCCcce
Q 005315 464 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---GKQANAL-FWSPSGRFIVLAGLKGFNGQLEFYNVDELET 539 (702)
Q Consensus 464 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~~v~~~-~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~ 539 (702)
++..+++.+.++ ..|++||..++. .+..+. ...|.++ +|||+|++|++++ |+.|+||++.+++.
T Consensus 366 d~~~~~~~~~~~--~~i~iwd~~~g~------~~~~l~~~~~~~v~s~~~fspdg~~lasg~----d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 366 DPNFKSCTPYEL--RTIDVFDGNSGK------MMCQLYDPESSGISSLNEFNPMGDTLASAM----GYHILIWSQQEART 433 (435)
T ss_dssp CTTSCCSSTTCC--CCEEEECSSSCC------EEEEECCSSCCCCCCEEEECTTSSCEEEEC----SSEEEECCCC----
T ss_pred CCCeEEEEecCC--CEEEEEECCCCc------EEEEEeCCCCCcEEEEEEECCCCCEEEEEc----CCcEEEEECCcCee
Confidence 444333333332 279999987654 444443 2256666 7999999998875 78999999997754
No 99
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-26 Score=249.01 Aligned_cols=303 Identities=8% Similarity=0.058 Sum_probs=206.2
Q ss_pred EEEEeCCceEEEecCCCCCCCc----ccccCCCcccceEEECCC------CcEEEEEeCCc-eEEeecCcCcce------
Q 005315 175 FVIRSGTDTEVLWNDARHLKPE----PVYKRSYWTESFVQWSPL------GTYLATVHRQG-AAVWGGANTFNR------ 237 (702)
Q Consensus 175 ~~~~~~~~~~~~w~~~~~~~~~----~~~~~~~~~v~~v~~Spd------g~~lat~~~~~-i~iw~~~~~~~~------ 237 (702)
++..+.++++.+|+.. ..+.. ..+.+|...|++++|+|+ +.+||+++.|+ |+||++. ....
T Consensus 176 laS~s~D~tI~iWd~~-~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~-~~~~~~~~~~ 253 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMN-TSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII-DNATDVHVFK 253 (524)
T ss_dssp ------CEEEEEEEEE-TTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC-CCSSSSSEEE
T ss_pred hccCCCCceEEEEEcc-CCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC-CCccccccce
Confidence 3445567788899973 33322 235677889999999997 67999999999 8899997 4321
Q ss_pred -----eeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-EEeeccCCCcccccCCCCCCCCc
Q 005315 238 -----LMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-VMRDFKGSADEFAVGGTGGVAGV 309 (702)
Q Consensus 238 -----~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~-~~~~~~~~~~~~~~~~~~~~~~~ 309 (702)
...+ +...|.+++|+|++ +|++|+.| ++|++||+.++. +...+.+|...+.
T Consensus 254 ~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D----------gtV~lWD~~~~~~~~~~~~~H~~~V~---------- 312 (524)
T 2j04_B 254 MCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN----------GFVAEFDLTDPEVPSFYDQVHDSYIL---------- 312 (524)
T ss_dssp CCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT----------SEEEEEETTBCSSCSEEEECSSSCEE----------
T ss_pred eecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC----------CEEEEEECCCCCCceEEeecccccEE----------
Confidence 1122 23359999999864 89999999 999999998774 4456778877663
Q ss_pred ccceE--EEcCCCC-cEEEEec-CCeEEEEecCCcccccceeeccC--CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEE
Q 005315 310 SWPVF--RWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSLKVE--NVMDFSWSPTDPIISLFVPELGGGNQPARVSL 383 (702)
Q Consensus 310 ~w~~~--~~s~~dg-~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~ 383 (702)
++ .|++ ++ .+||+++ |++|+|||+.+++.+.....|.. .|.+++|+|+++.+++ ++.++.+ .+
T Consensus 313 ---sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s-----~~~d~tv--~l 381 (524)
T 2j04_B 313 ---SVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY-----SDGASSL--RA 381 (524)
T ss_dssp ---EEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEE-----ECSSSEE--EE
T ss_pred ---EEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEE-----eCCCCcE--EE
Confidence 45 6788 88 8999999 99999999998876655544543 4789999999999887 6666654 55
Q ss_pred EecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeE-EEecCCCCceeEEEEe
Q 005315 384 VQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV-LELDNKNDKIIAFAWE 462 (702)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~s 462 (702)
|++.....+.....+......++|+|+|++|++++.+++ +.+|++...-..... ..-..+...+.+++|+
T Consensus 382 wd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt---------v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~s 452 (524)
T 2j04_B 382 VPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS---------LIITNAARRLLHGIKNSSATQKSLRLWKWDYS 452 (524)
T ss_dssp EETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE---------EECCBSCSSTTTCC------CCCCEEEECBCC
T ss_pred EECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE---------EEEEechHhhccccccCccceeeeEEEEeccC
Confidence 666665544444445566677899999999999999988 677776532111000 0000112357789999
Q ss_pred eCCcEEEEEEcCCCCCeEEEEEee-cccCcCceEEEEEcCC--CceeEEEEccCCC---EEEEEeccCCCceEEEEECC
Q 005315 463 PKGHRFAVIHGDSPRPDISFYSMR-TAQHAGRVSKLTTLKG--KQANALFWSPSGR---FIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 463 p~g~~l~~~~~d~~~~~v~i~d~~-~~~~~~~~~~~~~~~~--~~v~~~~~spdg~---~l~~~~~~~~dg~v~i~d~~ 535 (702)
|+|+.+.. .+. +.+|... ++. .+..+.+ ..|++++|||++. .+++++. +|.|+||++.
T Consensus 453 p~g~~~~~--~~~----~~~~~~~~~g~------~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~---~g~vrlw~l~ 516 (524)
T 2j04_B 453 IKDDKYRI--DSS----YEVYPLTVNDV------SKAKIDAHGINITCTKWNETSAGGKCYAFSNS---AGLLTLEYLS 516 (524)
T ss_dssp SSSCEEEE--CCC----CCCCC-------------------CCCSCCCEEECCSTTTTTEEEEECT---TSEEEEEECS
T ss_pred CCCCeEEc--cCC----ceecccccCCc------ceeeecCCCceEEEEECCCCCCccHHHHhhcc---CceEEEEEcc
Confidence 99985532 222 2233321 111 3444444 3799999999964 8999887 9999999987
No 100
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=2.9e-25 Score=238.76 Aligned_cols=293 Identities=11% Similarity=0.162 Sum_probs=231.4
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-
Q 005315 250 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 328 (702)
Q Consensus 250 ~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~- 328 (702)
+++++|++|++++.| +.|++||+.+++.+..+.+|...+. ++.|++ .++++++
T Consensus 124 ~~~~~g~~l~sg~~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~---~~l~s~~~ 177 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDD----------NTLKVWSAVTGKCLRTLVGHTGGVW-------------SSQMRD---NIIISGST 177 (445)
T ss_dssp EEEEETTEEEEEETT----------SCEEEEETTTCCEEEECCCCSSCEE-------------EEEEET---TEEEEEET
T ss_pred EEEEcCCEEEEEECC----------CcEEEEECCCCcEEEEEcCCCCCEE-------------EEEecC---CEEEEEeC
Confidence 355679999999999 9999999999999999999887763 577754 6888888
Q ss_pred CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEc
Q 005315 329 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 408 (702)
Q Consensus 329 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 408 (702)
|+.|++|++.+++.+.....|...|.++.|+ ++.+++ ++.++. |.+|++.+.+.+.....+......+.|
T Consensus 178 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s-----~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVS-----GSRDAT--LRVWDIETGQCLHVLMGHVAAVRCVQY- 247 (445)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEE-----EETTSE--EEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred CCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEE-----EeCCCE--EEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence 9999999999998887777788889999996 466777 556655 556677666665555445555555666
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 409 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
+|.++++++.++. +.+|++.... ....+.+|...|.+++| ++.++++++.|+ .|++||++++
T Consensus 248 -~~~~l~~~~~dg~---------i~iwd~~~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~---~i~i~d~~~~ 309 (445)
T 2ovr_B 248 -DGRRVVSGAYDFM---------VKVWDPETET---CLHTLQGHTNRVYSLQF--DGIHVVSGSLDT---SIRVWDVETG 309 (445)
T ss_dssp -CSSCEEEEETTSC---------EEEEEGGGTE---EEEEECCCSSCEEEEEE--CSSEEEEEETTS---CEEEEETTTC
T ss_pred -CCCEEEEEcCCCE---------EEEEECCCCc---EeEEecCCCCceEEEEE--CCCEEEEEeCCC---eEEEEECCCC
Confidence 7889999998877 7889876532 23456688999999999 889999999999 9999999765
Q ss_pred cCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeec-----ccCceeeeEECCCCCEEEEE
Q 005315 489 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA-----EHFMATDVEWDPTGRYVATA 563 (702)
Q Consensus 489 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~-----~~~~i~~~~~spdg~~l~t~ 563 (702)
. .+..+.++.....+++++++++++++. ||.|++||+.+++.+... +...|++++|+ +++|+++
T Consensus 310 ~------~~~~~~~~~~~v~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 378 (445)
T 2ovr_B 310 N------CIHTLTGHQSLTSGMELKDNILVSGNA---DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS 378 (445)
T ss_dssp C------EEEEECCCCSCEEEEEEETTEEEEEET---TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred C------EEEEEcCCcccEEEEEEeCCEEEEEeC---CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEE
Confidence 4 566666654333445557889999998 999999999988877652 55789999996 6899999
Q ss_pred EeecccccccEEEEEec-cceeeee-------ccccEeeEEEeeCCCCCCChhhHHH
Q 005315 564 VTSVHEMENGFNIWSFN-GKLLYRT-------LKDHFFQFLWRPRPPSFLTPEKEEE 612 (702)
Q Consensus 564 s~~~~~~d~~v~iw~~~-g~~l~~~-------~~~~i~~~~w~p~~~~l~s~~~d~~ 612 (702)
+. |+.|++|++. +..+... +.+.+++++|+|++..+++++.++.
T Consensus 379 ~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 379 SD-----DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp ET-----TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred eC-----CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 99 9999999987 5544433 3478999999999999999887764
No 101
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=4.5e-25 Score=262.25 Aligned_cols=389 Identities=11% Similarity=0.094 Sum_probs=251.5
Q ss_pred eEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCC----c---eEEeecCcCcceeeeecCC-C
Q 005315 174 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----G---AAVWGGANTFNRLMRYAHP-Q 245 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~---i~iw~~~~~~~~~~~~~~~-~ 245 (702)
.++..+. +...+|+.. +.....+..|...+.+++|||||++||+++.+ + |.+|+.. ++.......|. .
T Consensus 26 ~iaf~~~-~~l~~~~~~--gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~-~g~~~~lt~~~~~ 101 (1045)
T 1k32_A 26 RIIFVCC-DDLWEHDLK--SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE-NGEIKRITYFSGK 101 (1045)
T ss_dssp EEEEEET-TEEEEEETT--TCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT-TTEEEECCCCCEE
T ss_pred EEEEEEC-CcEEEEECC--CCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC-CCCeEEcccCCCc
Confidence 4444333 556688872 33456678899999999999999999998653 2 7799998 55432222344 3
Q ss_pred e-------eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCccccc------CC----------
Q 005315 246 V-------KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV------GG---------- 302 (702)
Q Consensus 246 v-------~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~------~~---------- 302 (702)
+ .+++|||||+.+++++.+.. ......|++|++.++........+...... .+
T Consensus 102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~----~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~ 177 (1045)
T 1k32_A 102 STGRRMFTDVAGFDPDGNLIISTDAMQP----FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWK 177 (1045)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSS----STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTST
T ss_pred ccccccccccccCCCCCEEEEEECCcCC----CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccc
Confidence 6 89999999996666664311 111246888888777644322221100000 00
Q ss_pred --CC-------------------CCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCC-cccccceeeccCCeeEEEeC
Q 005315 303 --TG-------------------GVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-FTLIDKKSLKVENVMDFSWS 359 (702)
Q Consensus 303 --~~-------------------~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~s 359 (702)
.+ +..+- ..++.|++ + .+++++. ++.+.||.+.. +...... .....+..++||
T Consensus 178 ~~~g~~~~~lw~~~~~~~~~~l~~~~~~-v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~~~~~~~~S 253 (1045)
T 1k32_A 178 GYRGGTRGKIWIEVNSGAFKKIVDMSTH-VSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFTDYYPRHLN 253 (1045)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEECCSSC-CEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEEC-CCCCSSCEEEEE
T ss_pred cccCCCcCCEEEECCCCCeEECcCCCCc-ccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEe-cCCCCcceeeEc
Confidence 00 00000 11467888 7 5555555 78888987653 2222222 122346678999
Q ss_pred CCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee-----------cccccceeEEc-cCCCEEEEEEccccccccc
Q 005315 360 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-----------FSVSDCKMYWQ-SSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 360 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s-~~g~~l~~~~~~~~~~~~~ 427 (702)
|+|+.|++ + ....|++|+..... +..... +......+.|+ |+|++|++.... .
T Consensus 254 pDG~~la~-----~---~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~-~----- 318 (1045)
T 1k32_A 254 TDGRRILF-----S---KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG-Q----- 318 (1045)
T ss_dssp ESSSCEEE-----E---ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT-E-----
T ss_pred CCCCEEEE-----E---eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcC-E-----
Confidence 99999998 3 13468888773332 221111 11235567899 999999988732 1
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCC-ceeEEEEeeCCcEEEEEEcCCCCCeEE-EEEeecccCcCceEEEEEcCCCce
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKND-KIIAFAWEPKGHRFAVIHGDSPRPDIS-FYSMRTAQHAGRVSKLTTLKGKQA 505 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~-~v~~~~~sp~g~~l~~~~~d~~~~~v~-i~d~~~~~~~~~~~~~~~~~~~~v 505 (702)
+.+|++. ... ...+..|.. .+.+++|+ +|+.|++++.+. .+. +|++.++. ...+. -....+
T Consensus 319 ----i~~~~~~--~~~--~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~---~l~~~~d~~~~~----~~~l~-~~~~~~ 381 (1045)
T 1k32_A 319 ----AFIQDVS--GTY--VLKVPEPLRIRYVRRGGD-TKVAFIHGTREG---DFLGIYDYRTGK----AEKFE-ENLGNV 381 (1045)
T ss_dssp ----EEEECTT--SSB--EEECSCCSCEEEEEECSS-SEEEEEEEETTE---EEEEEEETTTCC----EEECC-CCCCSE
T ss_pred ----EEEEcCC--CCc--eEEccCCCcceEEeeeEc-CCCeEEEEECCC---ceEEEEECCCCC----ceEec-CCccce
Confidence 3444432 222 234556677 89999999 999999998855 787 88875432 11222 223468
Q ss_pred eEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeec-----ccccccEEEEE
Q 005315 506 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSV-----HEMENGFNIWS 578 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~-----~~~d~~v~iw~ 578 (702)
..++|||||++|++++. ++.|++||+.+++.... .+...+.+++|||||++|++++... ...++.+++|+
T Consensus 382 ~~~~~SpDG~~la~~~~---~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVAND---RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred eeeEECCCCCEEEEECC---CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 89999999999999987 89999999998776544 4567789999999999999988720 00125899999
Q ss_pred eccceeeee--ccccEeeEEEeeCCCCCCChhh
Q 005315 579 FNGKLLYRT--LKDHFFQFLWRPRPPSFLTPEK 609 (702)
Q Consensus 579 ~~g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~ 609 (702)
+.+..+... +...+..+.|+|+|+.|+..+.
T Consensus 459 ~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 459 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp TTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 986554433 4466888999999998876654
No 102
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=1.1e-24 Score=233.37 Aligned_cols=329 Identities=10% Similarity=0.129 Sum_probs=231.7
Q ss_pred cccceEE---ECCCCcEEEEEeC--------------Cc-eEEeecCc---CcceeeeecCC-CeeEEEecCCCCEEEEE
Q 005315 204 WTESFVQ---WSPLGTYLATVHR--------------QG-AAVWGGAN---TFNRLMRYAHP-QVKLIDFSPGEKYLVTY 261 (702)
Q Consensus 204 ~~v~~v~---~Spdg~~lat~~~--------------~~-i~iw~~~~---~~~~~~~~~~~-~v~~i~fSpdg~~l~t~ 261 (702)
..+..++ |+|++..++..+. ++ +.||..+. ....+..+... .+.+++|+|++.+++++
T Consensus 61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 140 (433)
T 3bws_A 61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPL 140 (433)
T ss_dssp EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEB
T ss_pred CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEe
Confidence 3455666 7887776665432 12 24454431 22455555433 47899999977888888
Q ss_pred cCCCCCCCcCCCccEEEEEEccCCcEEee-----ccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEE
Q 005315 262 SSHEPSNPRDANRVVINIFDVRTGKVMRD-----FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVY 335 (702)
Q Consensus 262 s~d~~~~~~~~~~~~i~vwd~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~ 335 (702)
+.+ +.|++||+.+++.++. +.+|...+. +++|++ +++++++++ ++.|++|
T Consensus 141 ~~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~s~~~d~~v~~~ 196 (433)
T 3bws_A 141 LED----------EGMDVLDINSGQTVRLSPPEKYKKKLGFVE-------------TISIPE-HNELWVSQMQANAVHVF 196 (433)
T ss_dssp TTS----------SSEEEEETTTCCEEEECCCHHHHTTCCEEE-------------EEEEGG-GTEEEEEEGGGTEEEEE
T ss_pred CCC----------CeEEEEECCCCeEeeecCcccccccCCcee-------------EEEEcC-CCEEEEEECCCCEEEEE
Confidence 777 8899999999998873 345544442 689999 999999998 9999999
Q ss_pred ecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEE
Q 005315 336 ETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLA 415 (702)
Q Consensus 336 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 415 (702)
++.+++.+.....+...+.+++|+|+++.+++. ++.+ ..|.+|+..+.+.+..... ......+.|+|+|++++
T Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~--~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 197 DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCS----NWIS--EDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELY 269 (433)
T ss_dssp ETTTCCEEEEEECSSSSEEEEEEETTTTEEEEE----ETTT--TEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEE
T ss_pred ECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEE----ecCC--CcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEE
Confidence 999888776665666789999999999988652 2233 4677788777665444332 22355678999999998
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEE-EcCCCCCeEEEEEeecccCcCce
Q 005315 416 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI-HGDSPRPDISFYSMRTAQHAGRV 494 (702)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~-~~d~~~~~v~i~d~~~~~~~~~~ 494 (702)
++....... ....+.+.+|++.... . .....|...+.+++|+|++++++++ +.++ .|++|++.++.
T Consensus 270 ~~~~~~~~~-~~~dg~i~~~d~~~~~-~---~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~---~v~v~d~~~~~----- 336 (433)
T 3bws_A 270 IAQFSASNQ-ESGGGRLGIYSMDKEK-L---IDTIGPPGNKRHIVSGNTENKIYVSDMCCS---KIEVYDLKEKK----- 336 (433)
T ss_dssp EEEEESCTT-CSCCEEEEEEETTTTE-E---EEEEEEEECEEEEEECSSTTEEEEEETTTT---EEEEEETTTTE-----
T ss_pred EEECCCCcc-ccCCCeEEEEECCCCc-E---EeeccCCCCcceEEECCCCCEEEEEecCCC---EEEEEECCCCc-----
Confidence 877422100 0011236777776432 1 2222345688899999999877655 5566 99999997543
Q ss_pred EEEEEcC-CCceeEEEEccCCCEEEEEeccCC------------CceEEEEECCCcceeeec-ccCceeeeEECCCCCEE
Q 005315 495 SKLTTLK-GKQANALFWSPSGRFIVLAGLKGF------------NGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYV 560 (702)
Q Consensus 495 ~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~------------dg~v~i~d~~~~~~~~~~-~~~~i~~~~~spdg~~l 560 (702)
.+..+. ...+.+++|+|+|++|++++.+.. ||.|++||+.+++.+... ....+.+++|+|+|++|
T Consensus 337 -~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 415 (433)
T 3bws_A 337 -VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYL 415 (433)
T ss_dssp -EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEE
T ss_pred -EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEE
Confidence 333333 446899999999999998875321 479999999988877653 34678999999999999
Q ss_pred EEEEeecccccccEEEEEecc
Q 005315 561 ATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 561 ~t~s~~~~~~d~~v~iw~~~g 581 (702)
++++.. |+.+++|++++
T Consensus 416 ~~~~~~----d~~i~v~~~~~ 432 (433)
T 3bws_A 416 VISDFL----DHQIRVYRRDG 432 (433)
T ss_dssp EEEETT----TTEEEEEEETT
T ss_pred EEEECC----CCeEEEEEecC
Confidence 988743 89999999874
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=1.3e-25 Score=237.91 Aligned_cols=288 Identities=15% Similarity=0.283 Sum_probs=218.3
Q ss_pred CCCcccceEEECCCCcEEE-EEeCCc-eEEeecCcCcc---eeeee-cCC-CeeEEEecC-CCCEEEEEcCCCCCCCcCC
Q 005315 201 RSYWTESFVQWSPLGTYLA-TVHRQG-AAVWGGANTFN---RLMRY-AHP-QVKLIDFSP-GEKYLVTYSSHEPSNPRDA 272 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~la-t~~~~~-i~iw~~~~~~~---~~~~~-~~~-~v~~i~fSp-dg~~l~t~s~d~~~~~~~~ 272 (702)
...+...+++++|+...++ +++.+| |.||+...... .+..+ .|. .|.+++|+| ++++|++++.|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d-------- 103 (402)
T 2aq5_A 32 QTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED-------- 103 (402)
T ss_dssp CCCCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT--------
T ss_pred cCccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC--------
Confidence 4456777899999987655 466677 89999872322 12222 244 599999999 99999999999
Q ss_pred CccEEEEEEccCC-------cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC-cEEEEec-CCeEEEEecCCcccc
Q 005315 273 NRVVINIFDVRTG-------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLI 343 (702)
Q Consensus 273 ~~~~i~vwd~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg-~~la~~~-d~~i~v~d~~~~~~~ 343 (702)
+.|+|||+.++ +.+..+.+|...+. +++|+| ++ .+|++++ |+.|++||+.+++.+
T Consensus 104 --g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~ 167 (402)
T 2aq5_A 104 --CTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-------------IVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAV 167 (402)
T ss_dssp --SEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-------------EEEECS-SBTTEEEEEETTSCEEEEETTTTEEE
T ss_pred --CeEEEEEccCCCCccccCCceEEecCCCCeEE-------------EEEECc-CCCCEEEEEcCCCEEEEEECCCCCcc
Confidence 99999999888 56778888877664 799999 98 6888888 999999999998877
Q ss_pred cce--eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee-eecccc-cceeEEccCCCEEEEE--
Q 005315 344 DKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NLFSVS-DCKMYWQSSGDYLAVK-- 417 (702)
Q Consensus 344 ~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~-~~~~~~s~~g~~l~~~-- 417 (702)
... ..|...|.+++|+|++++|++ ++.++ .|.+|++.+.+.+... ..+... ...+.|+|+|.+|+++
T Consensus 168 ~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 240 (402)
T 2aq5_A 168 LTLGPDVHPDTIYSVDWSRDGALICT-----SCRDK--RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 (402)
T ss_dssp EEECTTTCCSCEEEEEECTTSSCEEE-----EETTS--EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred EEEecCCCCCceEEEEECCCCCEEEE-----EecCC--cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence 655 457778999999999999998 55555 4666777766655544 233332 5678899999999988
Q ss_pred -EcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEE-cCCCCCeEEEEEeecccCcCceE
Q 005315 418 -VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVS 495 (702)
Q Consensus 418 -~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~ 495 (702)
..++. +.+|++.....+.....+ .|...+.+++|+|++++|++++ .|+ .|++|++.++.. ...
T Consensus 241 ~~~d~~---------i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg---~i~i~d~~~~~~--~~~ 305 (402)
T 2aq5_A 241 RMSERQ---------VALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDS---SIRYFEITSEAP--FLH 305 (402)
T ss_dssp TTCCEE---------EEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCS---CEEEEEECSSTT--CEE
T ss_pred CCCCce---------EEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCC---eEEEEEecCCCc--ceE
Confidence 34444 899998876555444444 5678899999999999998666 577 999999976542 123
Q ss_pred EEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce
Q 005315 496 KLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 539 (702)
Q Consensus 496 ~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~ 539 (702)
.+..+. ...+.+++|+|+|.++++ . ++.+++|++.++.+
T Consensus 306 ~l~~~~~~~~v~~~~~sp~~~~~~s--~---~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 306 YLSMFSSKESQRGMGYMPKRGLEVN--K---CEIARFYKLHERKC 345 (402)
T ss_dssp EEEEECCSSCCSEEEECCGGGSCGG--G---TEEEEEEEEETTEE
T ss_pred eecccccCCcccceEEeccccccee--c---ceeEEEEEcCCCcE
Confidence 444443 457999999999998764 3 67999999986543
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=4e-25 Score=236.36 Aligned_cols=284 Identities=13% Similarity=0.277 Sum_probs=202.5
Q ss_pred CcccceEEECCCC----------cEEEEEeC-----CceEEeecC---------------------------cCcceeee
Q 005315 203 YWTESFVQWSPLG----------TYLATVHR-----QGAAVWGGA---------------------------NTFNRLMR 240 (702)
Q Consensus 203 ~~~v~~v~~Spdg----------~~lat~~~-----~~i~iw~~~---------------------------~~~~~~~~ 240 (702)
.|+..++.|.|+. .+|+.|.. ++|.++++. +.......
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 124 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIK 124 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEE
Confidence 4778889999875 46776653 236666421 01122334
Q ss_pred ecCC-CeeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccC----------CcEEeeccCCCcccccCCCCCCCC
Q 005315 241 YAHP-QVKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRT----------GKVMRDFKGSADEFAVGGTGGVAG 308 (702)
Q Consensus 241 ~~~~-~v~~i~fSpd-g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~----------g~~~~~~~~~~~~~~~~~~~~~~~ 308 (702)
+.|. .|.+++|+|+ +.+|++++.+ +.|+||++.+ ...+..+.+|...+.
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~d----------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~--------- 185 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPS----------SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY--------- 185 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSS----------SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC---------
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCC----------CcEEEEECCCcccccCccccCCCcEEecCCCCCeE---------
Confidence 4555 4999999997 6899999999 9999999976 567777777776653
Q ss_pred cccceEEEcCCCCc-EEEEec-CCeEEEEecCCccc-------ccceeeccCCeeEEEeCC-CCCeEEEEeecCCCCCCC
Q 005315 309 VSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFTL-------IDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQP 378 (702)
Q Consensus 309 ~~w~~~~~s~~dg~-~la~~~-d~~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~ 378 (702)
+++|+| ++. +|++++ +|.|.+|++.++.. ......|...|.+++|+| ++.+|++ ++.++.
T Consensus 186 ----~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s-----~~~dg~ 255 (430)
T 2xyi_A 186 ----GLSWNP-NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-----VADDQK 255 (430)
T ss_dssp ----CEEECT-TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEE-----EETTSE
T ss_pred ----EEEeCC-CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEE-----EeCCCe
Confidence 789999 988 999888 99999999987432 112224555688888888 4556665 444444
Q ss_pred cEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeE
Q 005315 379 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA 458 (702)
Q Consensus 379 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~ 458 (702)
++ +|++.. .........+..|...|++
T Consensus 256 i~--i~d~~~---------------------------------------------------~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 256 LM--IWDTRN---------------------------------------------------NNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp EE--EEETTC---------------------------------------------------SCSSSCSEEEECCSSCEEE
T ss_pred EE--EEECCC---------------------------------------------------CCCCcceeEeecCCCCeEE
Confidence 33 333322 1100011223467899999
Q ss_pred EEEeeCCc-EEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc--CCCceeEEEEccCCC-EEEEEeccCCCceEEEEEC
Q 005315 459 FAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPSGR-FIVLAGLKGFNGQLEFYNV 534 (702)
Q Consensus 459 ~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~-~l~~~~~~~~dg~v~i~d~ 534 (702)
++|+|++. .|++++.++ .|++||++.... .+..+ +...+.+++|+|+|+ +|++++. ||.|++||+
T Consensus 283 i~~~p~~~~~l~tg~~dg---~v~vwd~~~~~~-----~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~---d~~i~iwd~ 351 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADK---TVALWDLRNLKL-----KLHSFESHKDEIFQVQWSPHNETILASSGT---DRRLHVWDL 351 (430)
T ss_dssp EEECSSCTTEEEEEETTS---EEEEEETTCTTS-----CSEEEECCSSCEEEEEECSSCTTEEEEEET---TSCCEEEEG
T ss_pred EEeCCCCCCEEEEEeCCC---eEEEEeCCCCCC-----CeEEeecCCCCEEEEEECCCCCCEEEEEeC---CCcEEEEeC
Confidence 99999997 578888888 999999976332 23333 345799999999996 5777777 999999999
Q ss_pred CC--------------cceeee--cccCceeeeEECCCCC-EEEEEEeecccccccEEEEEecccee
Q 005315 535 DE--------------LETMAT--AEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGKLL 584 (702)
Q Consensus 535 ~~--------------~~~~~~--~~~~~i~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~~l 584 (702)
.. .+++.. .|...|++++|+|+++ +|++++. |+.|+||++....+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-----dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE-----DNIMQVWQMAENVY 413 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET-----TSEEEEEEECHHHH
T ss_pred CCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC-----CCCEEEeEcccccc
Confidence 86 234333 4567899999999999 7888888 99999999975544
No 105
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=2.1e-24 Score=227.67 Aligned_cols=267 Identities=13% Similarity=0.130 Sum_probs=196.7
Q ss_pred eEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEE-EEEeCCc-eEEeecCcCcceeeeecCC-CeeEEE
Q 005315 174 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYL-ATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLID 250 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~l-at~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~ 250 (702)
.++..+.++.+.+|+. ..++....+..|. .+.+++|+|+|++| ++++.++ |.+||.. +++.+..+.+. .+.+++
T Consensus 4 l~vs~~~d~~v~v~d~-~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~v~~~~ 80 (391)
T 1l0q_A 4 AYIANSESDNISVIDV-TSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA-TNNVIATVPAGSSPQGVA 80 (391)
T ss_dssp EEEEETTTTEEEEEET-TTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT-TTEEEEEEECSSSEEEEE
T ss_pred EEEEcCCCCEEEEEEC-CCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC-CCeEEEEEECCCCccceE
Confidence 3455556788889998 4566666666665 47999999999987 5565666 8899998 77777777543 699999
Q ss_pred ecCCCCEEEE-EcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEE-EEec
Q 005315 251 FSPGEKYLVT-YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF-AKLG 328 (702)
Q Consensus 251 fSpdg~~l~t-~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~l-a~~~ 328 (702)
|+|+|++|++ ++.+ +.|++||+.+++.+..+..+.... .++|+| ++++| ++++
T Consensus 81 ~spdg~~l~~~~~~~----------~~v~v~d~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~l~~~~~ 135 (391)
T 1l0q_A 81 VSPDGKQVYVTNMAS----------STLSVIDTTSNTVAGTVKTGKSPL--------------GLALSP-DGKKLYVTNN 135 (391)
T ss_dssp ECTTSSEEEEEETTT----------TEEEEEETTTTEEEEEEECSSSEE--------------EEEECT-TSSEEEEEET
T ss_pred ECCCCCEEEEEECCC----------CEEEEEECCCCeEEEEEeCCCCcc--------------eEEECC-CCCEEEEEeC
Confidence 9999998864 4456 899999999999988887665443 789999 99977 5666
Q ss_pred -CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEE
Q 005315 329 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 407 (702)
Q Consensus 329 -d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (702)
++.|.+||+.+++.+..... ...+..++|+|+++.|++. ++.+ ..|.+|+..+.+..
T Consensus 136 ~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~----~~~~--~~v~~~d~~~~~~~--------------- 193 (391)
T 1l0q_A 136 GDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVA----NFDS--MSISVIDTVTNSVI--------------- 193 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEE----ETTT--TEEEEEETTTTEEE---------------
T ss_pred CCCEEEEEECCCCcEEEEEec-CCCcceEEECCCCCEEEEE----eCCC--CEEEEEECCCCeEE---------------
Confidence 99999999998876654433 3457889999999877541 2233 34555554322110
Q ss_pred ccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc---CCCCCeEEEEE
Q 005315 408 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG---DSPRPDISFYS 484 (702)
Q Consensus 408 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~---d~~~~~v~i~d 484 (702)
..+ .+...+.+++|+|+|+++++++. ++ .|++||
T Consensus 194 ---------------------------------------~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~---~v~~~d 230 (391)
T 1l0q_A 194 ---------------------------------------DTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFN---TVSMID 230 (391)
T ss_dssp ---------------------------------------EEE-ECSSEEEEEEECTTSSEEEEEEECSSCC---EEEEEE
T ss_pred ---------------------------------------EEE-ecCCCccceEECCCCCEEEEEecCcCCC---cEEEEE
Confidence 001 12557788999999999999884 55 999999
Q ss_pred eecccCcCceEEEEEcCC-CceeEEEEccCCCEEEEE-eccCCCceEEEEECCCcceeee
Q 005315 485 MRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLA-GLKGFNGQLEFYNVDELETMAT 542 (702)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~-~~~~~dg~v~i~d~~~~~~~~~ 542 (702)
+.++. .+..+.. ..+.+++|+|+|++|+++ +. ++.|++||+.+++++..
T Consensus 231 ~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~s~~~---d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 231 TGTNK------ITARIPVGPDPAGIAVTPDGKKVYVALSF---XNTVSVIDTATNTITAT 281 (391)
T ss_dssp TTTTE------EEEEEECCSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEE
T ss_pred CCCCe------EEEEEecCCCccEEEEccCCCEEEEEcCC---CCEEEEEECCCCcEEEE
Confidence 96543 4444443 357889999999988554 55 89999999998877654
No 106
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=8.2e-25 Score=231.84 Aligned_cols=320 Identities=13% Similarity=0.186 Sum_probs=204.2
Q ss_pred ccccccccCC-CCCceEEEEeCCceEEEecCCCCCCCcccc-------------cCCCcccceEEECC-CCcEEEEEeCC
Q 005315 160 ENLQKWLTDE-KARDQFVIRSGTDTEVLWNDARHLKPEPVY-------------KRSYWTESFVQWSP-LGTYLATVHRQ 224 (702)
Q Consensus 160 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-------------~~~~~~v~~v~~Sp-dg~~lat~~~~ 224 (702)
..+.+..+.| ++ ..+++.+.++.+.+|+.. .......+ .+|...|++++|+| ++.+|++++.+
T Consensus 44 ~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 44 GGINTLDIEPVEG-RYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp SCEEEEEECTTTC-CEEEEEETTSCEEEEECC-CCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred CcEEEEEEecCCC-CEEEEEcCCCeEEEEECC-CCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 3445555666 44 356667778889999984 44443333 25999999999999 78899999999
Q ss_pred c-eEEeecCcCcceeeeecCC-CeeEEEecCCC---CEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccc
Q 005315 225 G-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGE---KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA 299 (702)
Q Consensus 225 ~-i~iw~~~~~~~~~~~~~~~-~v~~i~fSpdg---~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~ 299 (702)
+ |++|+.. +...+..+.+. .+.++.|+|.+ .+|++++.+ +.|++||+.+++.+..+..|...+.
T Consensus 122 ~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 122 KTLKVWDTN-TLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG----------PKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp SEEEEEETT-TTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS----------SSEEEEESSSSCCCEEECCCCSCEE
T ss_pred CeEEEeeCC-CCccceeccCCCceeeeEeecCCCCCcEEEEEcCC----------CeEEEEeCCCcceeeeecCCCCcEE
Confidence 8 8899999 78877777655 48999999854 599999999 9999999999999999988877664
Q ss_pred cCCCCCCCCcccceEEEcCCCCcE-EEEec-CCeEEEEecCCccc-cc---------------ceeeccCCeeEEEeCCC
Q 005315 300 VGGTGGVAGVSWPVFRWGGGKDKY-FAKLG-KNMISVYETESFTL-ID---------------KKSLKVENVMDFSWSPT 361 (702)
Q Consensus 300 ~~~~~~~~~~~w~~~~~s~~dg~~-la~~~-d~~i~v~d~~~~~~-~~---------------~~~~~~~~v~~~~~sp~ 361 (702)
+++|+| ++.+ |++++ ++.|++|++.++.. +. ....+...|.+++|+|+
T Consensus 191 -------------~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 191 -------------AVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp -------------EEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred -------------EEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 799999 9984 77777 99999999976541 11 11245567999999999
Q ss_pred CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCC
Q 005315 362 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD 441 (702)
Q Consensus 362 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 441 (702)
+++|++ ++.++.++ +|++.+.+...........
T Consensus 257 ~~~l~~-----~~~dg~i~--vwd~~~~~~~~~~~~~~~~---------------------------------------- 289 (408)
T 4a11_B 257 GLHLLT-----VGTDNRMR--LWNSSNGENTLVNYGKVCN---------------------------------------- 289 (408)
T ss_dssp SSEEEE-----EETTSCEE--EEETTTCCBCCCCCCCCCC----------------------------------------
T ss_pred CCEEEE-----ecCCCeEE--EEECCCCccceeccccccc----------------------------------------
Confidence 999998 55666544 4454443321110000000
Q ss_pred cceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEE
Q 005315 442 IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVL 519 (702)
Q Consensus 442 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~ 519 (702)
.....+........+..+++++.++ .|++|++.++. .+..+.++ .|.+++|+|+|++|++
T Consensus 290 ---------~~~~~~~~~~~~~~~~~~~~~~~~~---~i~v~d~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 290 ---------NSKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGE------QITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp ---------CCSSCCCCEECCSSSSCEEEEEETT---EEEEEETTTCC------EEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred ---------cccccceeEEecCCCceEEEEecCC---EEEEEECcCCc------ceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 0001111111122455667777777 99999997654 56666544 7999999999999999
Q ss_pred EeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCE-EEEEEeecccccccEEEEEec
Q 005315 520 AGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRY-VATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 520 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~-l~t~s~~~~~~d~~v~iw~~~ 580 (702)
++. ||.|++|++.+++.+....... ....++|.... +.+++. ++.+++|+..
T Consensus 352 ~~~---dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~W~~~ 404 (408)
T 4a11_B 352 GSR---DCNILAWVPSLYEPVPDDDETT-TKSQLNPAFEDAWSSSDE-----EGGTSAWSHP 404 (408)
T ss_dssp EET---TSCEEEEEECC---------------------------------------------
T ss_pred ECC---CCeEEEEeCCCCCccCCCCceE-eccccccccceeecccCc-----cCceeecCCc
Confidence 998 9999999999887765432211 22334443333 333444 8999999753
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.94 E-value=9.2e-25 Score=234.04 Aligned_cols=266 Identities=15% Similarity=0.252 Sum_probs=201.1
Q ss_pred cCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005315 200 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 276 (702)
Q Consensus 200 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~ 276 (702)
.+|...|.|++| +|++||+|+.++ |++||.. +++.+..+. |. .|.+++| ++++|++|+.| +.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~d----------g~ 194 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQY--DERVIITGSSD----------ST 194 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEEC--CSSEEEEEETT----------SC
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCC-CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCC----------Ce
Confidence 456667877776 899999999999 8899999 777777663 44 4999998 88999999999 99
Q ss_pred EEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccc---cceeeccCC
Q 005315 277 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI---DKKSLKVEN 352 (702)
Q Consensus 277 i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~---~~~~~~~~~ 352 (702)
|++||+.+++.+..+.+|...+. ++.|++ .++++++ |+.|++|++.++... .....|...
T Consensus 195 i~vwd~~~~~~~~~~~~h~~~v~-------------~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 258 (435)
T 1p22_A 195 VRVWDVNTGEMLNTLIHHCEAVL-------------HLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258 (435)
T ss_dssp EEEEESSSCCEEEEECCCCSCEE-------------EEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred EEEEECCCCcEEEEEcCCCCcEE-------------EEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCc
Confidence 99999999999999998877663 677765 4888888 999999999877654 222334555
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccE
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 432 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 432 (702)
|.+++| ++++|++ ++.++.+++ |++.+.+
T Consensus 259 v~~~~~--~~~~l~s-----~~~dg~i~v--wd~~~~~------------------------------------------ 287 (435)
T 1p22_A 259 VNVVDF--DDKYIVS-----ASGDRTIKV--WNTSTCE------------------------------------------ 287 (435)
T ss_dssp EEEEEE--ETTEEEE-----EETTSEEEE--EETTTCC------------------------------------------
T ss_pred EEEEEe--CCCEEEE-----EeCCCeEEE--EECCcCc------------------------------------------
Confidence 666666 5566666 444444333 3322111
Q ss_pred EEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEE
Q 005315 433 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFW 510 (702)
Q Consensus 433 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~ 510 (702)
....+.+|...|.+++| +++++++++.|+ .|++||++++. .+..+.++ .+.+++|
T Consensus 288 ------------~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg---~i~iwd~~~~~------~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 288 ------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGA------CLRVLEGHEELVRCIRF 344 (435)
T ss_dssp ------------EEEEEECCSSCEEEEEE--ETTEEEEEETTS---CEEEEETTTCC------EEEEECCCSSCEEEEEC
T ss_pred ------------EEEEEcCCCCcEEEEEe--CCCEEEEEeCCC---eEEEEECCCCC------EEEEEeCCcCcEEEEEe
Confidence 11234467888988888 578999999999 99999997654 56666654 6788888
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCCcc---------eee--ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDELE---------TMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~~~---------~~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
++++|++++. ||.|++||+.++. .+. ..|...|++++| +|++|++++. |+.|++|++
T Consensus 345 --~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-----Dg~i~iwd~ 412 (435)
T 1p22_A 345 --DNKRIVSGAY---DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH-----DDTILIWDF 412 (435)
T ss_dssp --CSSEEEEEET---TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS-----SSEEEEEC-
T ss_pred --cCCEEEEEeC---CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC-----CCEEEEEEC
Confidence 7899999998 9999999997654 443 356788999999 7899999999 999999998
Q ss_pred ccc
Q 005315 580 NGK 582 (702)
Q Consensus 580 ~g~ 582 (702)
...
T Consensus 413 ~~~ 415 (435)
T 1p22_A 413 LND 415 (435)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 108
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.6e-25 Score=225.60 Aligned_cols=268 Identities=12% Similarity=0.141 Sum_probs=205.0
Q ss_pred cceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccc
Q 005315 235 FNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 312 (702)
Q Consensus 235 ~~~~~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~ 312 (702)
.+....+ .|. .|.+++| |++++|++++.+ +.|++||+.+++....+..|...+.
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~d----------g~v~vw~~~~~~~~~~~~~~~~~v~------------- 63 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRD----------GTVRLWSKDDQWLGTVVYTGQGFLN------------- 63 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETT----------SEEEEEEESSSEEEEEEEECSSCEE-------------
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcC----------CcEEEEECCCCEEEEEeecCCccEE-------------
Confidence 3444444 244 5999999 999999999999 9999999999998888888876653
Q ss_pred eEEEcCCCCcEEEEec-CCeEEEEecCCcc---cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC
Q 005315 313 VFRWGGGKDKYFAKLG-KNMISVYETESFT---LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 388 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~-d~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 388 (702)
+++|+| ++++|++++ ++.|++|++.... .+.....|...|.+++| ++.++++ ++.++.+++|
T Consensus 64 ~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~-----~~~d~~i~~~------ 129 (313)
T 3odt_A 64 SVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVIS-----GSWDKTAKVW------ 129 (313)
T ss_dssp EEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEE-----EETTSEEEEE------
T ss_pred EEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEE-----EeCCCCEEEE------
Confidence 799999 999999999 9999999987542 33333445566777777 4556665 4445444433
Q ss_pred cceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcE
Q 005315 389 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHR 467 (702)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~ 467 (702)
+ .. .....+..|...+.+++|+| ++++
T Consensus 130 -----------------------------------------------d---~~--~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 130 -----------------------------------------------K---EG--SLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp -----------------------------------------------E---TT--EEEEEEECCSSCEEEEEEEETTTTE
T ss_pred -----------------------------------------------c---CC--cEEEecccCCCceeEEEEccCCCCE
Confidence 2 00 01123446788999999999 9999
Q ss_pred EEEEEcCCCCCeEEEEEeecccCcCceEEEEEc---CCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--
Q 005315 468 FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL---KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-- 542 (702)
Q Consensus 468 l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-- 542 (702)
+++++.++ .|++||... .+..+ ....+.+++|+|++. +++++. +|.|++||+.+++.+..
T Consensus 158 l~~~~~d~---~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 158 FLTASADK---TIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDGH-FISCSN---DGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEEEETTS---CEEEEETTE--------EEEEECSSCSSCEEEEEEEETTE-EEEEET---TSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCC---CEEEEecCc--------eEEEEeccCcccEEEEEEcCCCe-EEEccC---CCeEEEEECCchhhhhhhh
Confidence 99999999 999999421 33333 344799999999998 778877 99999999998887765
Q ss_pred cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeee--ccccEeeEEEeeCCCCCCChhhHHHHH
Q 005315 543 AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 543 ~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.|...+++++|+|+| .|++++. |+.+++|++. +..+... +...+.++.|+|+++ +++++.++.|+
T Consensus 223 ~~~~~i~~~~~~~~~-~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~ 290 (313)
T 3odt_A 223 GHESFVYCIKLLPNG-DIVSCGE-----DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVR 290 (313)
T ss_dssp CCSSCEEEEEECTTS-CEEEEET-----TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEE
T ss_pred cCCceEEEEEEecCC-CEEEEec-----CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEE
Confidence 467899999999999 5888988 9999999986 4444333 557899999999998 66677777664
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=5.7e-25 Score=229.46 Aligned_cols=278 Identities=12% Similarity=0.171 Sum_probs=207.3
Q ss_pred Ccceeeee-cC-CCeeEEEecCC---CCEEEEEcCCCCCCCcCCCccEEEEEEccC-CcEE-eeccCCCcccccCCCCCC
Q 005315 234 TFNRLMRY-AH-PQVKLIDFSPG---EKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVM-RDFKGSADEFAVGGTGGV 306 (702)
Q Consensus 234 ~~~~~~~~-~~-~~v~~i~fSpd---g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~-g~~~-~~~~~~~~~~~~~~~~~~ 306 (702)
....+..+ .| ..|.+++|+|+ |++|++++.+ +.|+|||+.+ +..+ ..+.+|...+.
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~h~~~v~------- 90 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWA----------NDVRCWEVQDSGQTIPKAQQMHTGPVL------- 90 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETT----------SEEEEEEECTTSCEEEEEEEECSSCEE-------
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCC----------CcEEEEEcCCCCceeEEEeccccCCEE-------
Confidence 34444444 34 45999999999 6999999999 9999999987 5555 77777877664
Q ss_pred CCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEe--CCCCCeEEEEeecCCCCCCCcEEEE
Q 005315 307 AGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSW--SPTDPIISLFVPELGGGNQPARVSL 383 (702)
Q Consensus 307 ~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~--sp~~~~la~~~~~~~~~~~~~~i~~ 383 (702)
+++|+| ++++|++++ |+.|++|++.++..+. ...|...|.+++| +|++.+|++ ++.++. |.+
T Consensus 91 ------~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~--i~v 155 (368)
T 3mmy_A 91 ------DVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMT-----GSWDKT--LKF 155 (368)
T ss_dssp ------EEEECT-TSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEE-----EETTSE--EEE
T ss_pred ------EEEECc-CCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEE-----ccCCCc--EEE
Confidence 799999 999999998 9999999999887664 4457778999999 999999988 555655 556
Q ss_pred EecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee
Q 005315 384 VQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 463 (702)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 463 (702)
|++.+.+.+....... . ...+...+..++++..++. +.+|++........... ..+...+.++++.+
T Consensus 156 wd~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 222 (368)
T 3mmy_A 156 WDTRSSNPMMVLQLPE-R--CYCADVIYPMAVVATAERG---------LIVYQLENQPSEFRRIE-SPLKHQHRCVAIFK 222 (368)
T ss_dssp ECSSCSSCSEEEECSS-C--EEEEEEETTEEEEEEGGGC---------EEEEECSSSCEEEEECC-CSCSSCEEEEEEEE
T ss_pred EECCCCcEEEEEecCC-C--ceEEEecCCeeEEEeCCCc---------EEEEEeccccchhhhcc-ccccCCCceEEEcc
Confidence 6666665544443222 2 2234445567777777665 78888876544332222 13345666777776
Q ss_pred CCcE----EEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--------------ceeEEEEccCCCEEEEEeccCC
Q 005315 464 KGHR----FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--------------QANALFWSPSGRFIVLAGLKGF 525 (702)
Q Consensus 464 ~g~~----l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--------------~v~~~~~spdg~~l~~~~~~~~ 525 (702)
++.. +++++.++ .|++|+++...... .+..+..+ .+++++|+|+|++|++++.
T Consensus 223 ~~~~~~~~~~~~~~dg---~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--- 293 (368)
T 3mmy_A 223 DKQNKPTGFALGSIEG---RVAIHYINPPNPAK---DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS--- 293 (368)
T ss_dssp CTTSCEEEEEEEETTS---EEEEEESSCSCHHH---HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET---
T ss_pred cCCCCCCeEEEecCCC---cEEEEecCCCCccc---cceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc---
Confidence 6654 99999999 99999997643200 12222222 5899999999999999998
Q ss_pred CceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEe
Q 005315 526 NGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 526 dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
||.|++||+.+++.+.. .|...|++++|+|+|++|++++.
T Consensus 294 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 294 DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp TSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred CCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 99999999999888765 55688999999999999999998
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=5.9e-24 Score=217.17 Aligned_cols=266 Identities=19% Similarity=0.264 Sum_probs=199.5
Q ss_pred EEEEeCCceEEEecCCCCCCCcccc--cCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCCeeEEEe
Q 005315 175 FVIRSGTDTEVLWNDARHLKPEPVY--KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDF 251 (702)
Q Consensus 175 ~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~f 251 (702)
+++.+.++++.+|+. .+++....+ .+|...|++++|+|+|++||+|+.|+ |+||+.. +++.+..+.........+
T Consensus 38 ~lAvg~D~tV~iWd~-~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~-~~~~~~~~~~h~~~~~~~ 115 (318)
T 4ggc_A 38 VLAVALDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRLRNMTSHSARVGSL 115 (318)
T ss_dssp EEEEEETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEE
T ss_pred EEEEEeCCEEEEEEC-CCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC-CceeEEEecCccceEEEe
Confidence 344455888889998 566665554 56778899999999999999999999 8899999 888877775444445567
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C
Q 005315 252 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K 329 (702)
Q Consensus 252 Spdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d 329 (702)
++++.+|++++.+ +.+++|+..++ ..+..+.+|...+. .+.|++ ++++|++++ |
T Consensus 116 ~~~~~~l~s~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~l~s~~~d 171 (318)
T 4ggc_A 116 SWNSYILSSGSRS----------GHIHHHDVRVAEHHVATLSGHSQEVC-------------GLRWAP-DGRHLASGGND 171 (318)
T ss_dssp EEETTEEEEEETT----------SEEEEEETTSSSCEEEEEECCSSCEE-------------EEEECT-TSSEEEEEETT
T ss_pred ecCCCEEEEEecC----------CceEeeecCCCceeEEEEcCccCceE-------------EEEEcC-CCCEEEEEecC
Confidence 7788999999999 99999998766 45667777766653 689999 999999998 9
Q ss_pred CeEEEEecCCcccccc----eeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccccccee
Q 005315 330 NMISVYETESFTLIDK----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKM 405 (702)
Q Consensus 330 ~~i~v~d~~~~~~~~~----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 405 (702)
+.|++||+.+++.... ...+...|..+.++|++..++.... ++.++. |.+|+......
T Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~--i~lwd~~~~~~-------------- 233 (318)
T 4ggc_A 172 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--GTSDRH--IRIWNVCSGAC-------------- 233 (318)
T ss_dssp SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE--CTTTCE--EEEEETTTCCE--------------
T ss_pred cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe--cCCCCE--EEEEecccccc--------------
Confidence 9999999987764322 2234456889999998765553221 223333 33333221110
Q ss_pred EEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc--CCCCCeEEEE
Q 005315 406 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG--DSPRPDISFY 483 (702)
Q Consensus 406 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~--d~~~~~v~i~ 483 (702)
.....+...+..+.|+|++..++++++ |+ .|++|
T Consensus 234 -----------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~---~i~iw 269 (318)
T 4ggc_A 234 -----------------------------------------LSAVDAHSQVCSILWSPHYKELISGHGFAQN---QLVIW 269 (318)
T ss_dssp -----------------------------------------EEEEECSSCEEEEEEETTTTEEEEEECTTTC---CEEEE
T ss_pred -----------------------------------------cccccceeeeeeeeecccccceEEEEEcCCC---EEEEE
Confidence 011133677889999999999988774 56 89999
Q ss_pred EeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCc
Q 005315 484 SMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 537 (702)
Q Consensus 484 d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~ 537 (702)
|+.++. .+.++.+| .|++++|+|+|++|++++. ||+|+|||+.+.
T Consensus 270 d~~~~~------~~~~l~gH~~~V~~l~~spdg~~l~S~s~---D~~v~iWd~~~~ 316 (318)
T 4ggc_A 270 KYPTMA------KVAELKGHTSRVLSLTMSPDGATVASAAA---DETLRLWRCFEL 316 (318)
T ss_dssp ETTTCC------EEEEECCCSSCEEEEEECTTSSCEEEEET---TTEEEEECCSCC
T ss_pred ECCCCc------EEEEEcCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEECCCC
Confidence 997654 67777765 7999999999999999998 999999998743
No 111
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=9.5e-25 Score=231.74 Aligned_cols=310 Identities=13% Similarity=0.150 Sum_probs=218.7
Q ss_pred CcccceEEECCCCc-EEEEEe----CCc-----eEEeec--CcCcceeee--e-cCC-CeeEEEecC-------------
Q 005315 203 YWTESFVQWSPLGT-YLATVH----RQG-----AAVWGG--ANTFNRLMR--Y-AHP-QVKLIDFSP------------- 253 (702)
Q Consensus 203 ~~~v~~v~~Spdg~-~lat~~----~~~-----i~iw~~--~~~~~~~~~--~-~~~-~v~~i~fSp------------- 253 (702)
...+.+..|++.|. ++++|+ .+| ++|||+ . +++.+.. + .|. .+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGA-PGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSS-TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCC-CCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 35678899999986 555775 344 689999 7 6665532 3 232 377777665
Q ss_pred -CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CC-
Q 005315 254 -GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KN- 330 (702)
Q Consensus 254 -dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~- 330 (702)
.+..|++++.+.. +...+.|++||+. +..++.+..|...+. +++||| ||++|++++ ++
T Consensus 141 ~~~~~l~~~s~~~~----~~~~~~i~i~d~~-g~~~~~l~~~~~~v~-------------~~~~Sp-dg~~la~~s~~~~ 201 (415)
T 2hqs_A 141 AFRTRIAYVVQTNG----GQFPYELRVSDYD-GYNQFVVHRSPQPLM-------------SPAWSP-DGSKLAYVTFESG 201 (415)
T ss_dssp CTTCEEEEEEECSS----SSCCEEEEEEETT-SCSCEEEEEESSCEE-------------EEEECT-TSSEEEEEECTTS
T ss_pred cCCCEEEEEEecCC----CCccceEEEEcCC-CCCCEEEeCCCCcce-------------eeEEcC-CCCEEEEEEecCC
Confidence 2667777665410 1111689999985 555666666655542 789999 999999988 53
Q ss_pred --eEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEc
Q 005315 331 --MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 408 (702)
Q Consensus 331 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 408 (702)
.|++||+.+++.. ....+...+.+++|+|+|+.|++. ++.++...|++|++.+.+.
T Consensus 202 ~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~----~~~~g~~~i~~~d~~~~~~----------------- 259 (415)
T 2hqs_A 202 RSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFA----LSKTGSLNLYVMDLASGQI----------------- 259 (415)
T ss_dssp SCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEE----ECTTSSCEEEEEETTTCCE-----------------
T ss_pred CcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEE----EecCCCceEEEEECCCCCE-----------------
Confidence 9999999987654 233344568899999999988852 3345556677666543221
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 409 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
..+..|...+.+++|+|+|++|++++.+.....|++|++.++
T Consensus 260 --------------------------------------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~ 301 (415)
T 2hqs_A 260 --------------------------------------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG 301 (415)
T ss_dssp --------------------------------------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred --------------------------------------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence 123355677889999999999999887543346777787554
Q ss_pred cCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecc
Q 005315 489 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVH 568 (702)
Q Consensus 489 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~ 568 (702)
.. .........+.+++|||+|++|++++....++.|++||+.+++......+..+.+++|+|||++|++++.
T Consensus 302 ~~-----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~--- 373 (415)
T 2hqs_A 302 AP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS--- 373 (415)
T ss_dssp CC-----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEE---
T ss_pred CE-----EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEc---
Confidence 31 1112234568899999999999988762223689999999877655444458889999999999999988
Q ss_pred cccc---cEEEEEeccceeeee--ccccEeeEEEeeCCC
Q 005315 569 EMEN---GFNIWSFNGKLLYRT--LKDHFFQFLWRPRPP 602 (702)
Q Consensus 569 ~~d~---~v~iw~~~g~~l~~~--~~~~i~~~~w~p~~~ 602 (702)
++ .+++|++.|..+... +.+.+.+++|+|.-.
T Consensus 374 --~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 374 --QGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp --ETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred --CCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 55 799999998776655 457899999999653
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=3.7e-25 Score=234.53 Aligned_cols=267 Identities=15% Similarity=0.191 Sum_probs=203.9
Q ss_pred EeCCceEEEecCCCCC---CCcccccCCCcccceEEECC-CCcEEEEEeCCc-eEEeecCcCc-------ceeeee-cCC
Q 005315 178 RSGTDTEVLWNDARHL---KPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTF-------NRLMRY-AHP 244 (702)
Q Consensus 178 ~~~~~~~~~w~~~~~~---~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~-------~~~~~~-~~~ 244 (702)
.++++.+.+|+....+ .....+.+|...|++++|+| ++++||+++.++ |+||++. +. ..+..+ .|.
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~-~~~~~~~~~~~~~~~~~h~ 131 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP-DGGLVLPLREPVITLEGHT 131 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC-TTCCSSCBCSCSEEEECCS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc-CCCCccccCCceEEecCCC
Confidence 4567888899974433 34456789999999999999 999999999999 8899998 54 334444 244
Q ss_pred -CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeec--cCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 245 -QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 245 -~v~~i~fSpdg-~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
.|.+++|+|++ .+|++++.| +.|+|||+.+++.+..+ ..|...+. +++|+| +
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~ 187 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCD----------NVILVWDVGTGAAVLTLGPDVHPDTIY-------------SVDWSR-D 187 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETT----------SCEEEEETTTTEEEEEECTTTCCSCEE-------------EEEECT-T
T ss_pred CeEEEEEECcCCCCEEEEEcCC----------CEEEEEECCCCCccEEEecCCCCCceE-------------EEEECC-C
Confidence 59999999998 699999999 99999999999999998 67766653 799999 9
Q ss_pred CcEEEEec-CCeEEEEecCCcccccce-eeccCC-eeEEEeCCCCCeEEEEeecCCC-CCCCcEEEEEecCCcce-eeee
Q 005315 321 DKYFAKLG-KNMISVYETESFTLIDKK-SLKVEN-VMDFSWSPTDPIISLFVPELGG-GNQPARVSLVQIPSKEE-LRQK 395 (702)
Q Consensus 321 g~~la~~~-d~~i~v~d~~~~~~~~~~-~~~~~~-v~~~~~sp~~~~la~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~ 395 (702)
+++|++++ |+.|++||+.+++.+... ..|... +..+.|+|++.+|++ +. ......|.+|+...... +...
T Consensus 188 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----g~~~~~d~~i~iwd~~~~~~~~~~~ 262 (402)
T 2aq5_A 188 GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT-----GFSRMSERQVALWDTKHLEEPLSLQ 262 (402)
T ss_dssp SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE-----EECTTCCEEEEEEETTBCSSCSEEE
T ss_pred CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE-----eccCCCCceEEEEcCccccCCceEE
Confidence 99999998 999999999988877655 345444 889999999999987 41 13445566677665442 2222
Q ss_pred ee-cccccceeEEccCCCEEEEEE-cccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc
Q 005315 396 NL-FSVSDCKMYWQSSGDYLAVKV-DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 396 ~~-~~~~~~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 473 (702)
.. .......+.|+|+|.+|++.. .++. +.+|++.........+....|...|.+++|+|++.++++ .
T Consensus 263 ~~~~~~~v~~~~~s~~~~~l~~~g~~dg~---------i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 263 ELDTSSGVLLPFFDPDTNIVYLCGKGDSS---------IRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp ECCCCSSCEEEEEETTTTEEEEEETTCSC---------EEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred eccCCCceeEEEEcCCCCEEEEEEcCCCe---------EEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 21 334556779999999998665 4655 899999876532333333246799999999999998764 4
Q ss_pred CCCCCeEEEEEeecc
Q 005315 474 DSPRPDISFYSMRTA 488 (702)
Q Consensus 474 d~~~~~v~i~d~~~~ 488 (702)
++ .+++|++.++
T Consensus 332 ~~---~~~~~~l~~~ 343 (402)
T 2aq5_A 332 CE---IARFYKLHER 343 (402)
T ss_dssp TE---EEEEEEEETT
T ss_pred ce---eEEEEEcCCC
Confidence 55 8999999754
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=3.9e-25 Score=228.55 Aligned_cols=274 Identities=9% Similarity=0.086 Sum_probs=204.8
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---EEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
..|.+++|+|++++|++++.+ +.|+||++.++. .+..+..|...+. +++|+| +
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d----------~~v~iw~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~ 67 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWD----------GSLTVYKFDIQAKNVDLLQSLRYKHPLL-------------CCNFID-N 67 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETT----------SEEEEEEEETTTTEEEEEEEEECSSCEE-------------EEEEEE-S
T ss_pred CcEEEEEEcCCCCEEEEEcCC----------CeEEEEEeCCCCccccceeeeecCCceE-------------EEEECC-C
Confidence 359999999999999999999 999999998887 3444556655553 799999 9
Q ss_pred Cc-EEEEec-CCeEEEEec-CCcccccceee--ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee
Q 005315 321 DK-YFAKLG-KNMISVYET-ESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 395 (702)
Q Consensus 321 g~-~la~~~-d~~i~v~d~-~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 395 (702)
++ +|++++ ++.|++|++ .++.. ..... |...|.+++|+| +..|++ ++.++.+++| ++.+..
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s-----~~~d~~i~iw--d~~~~~----- 133 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIA-----ASWDGLIEVI--DPRNYG----- 133 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEE-----EETTSEEEEE--CHHHHT-----
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEE-----EcCCCeEEEE--cccccc-----
Confidence 99 999988 999999999 77654 33345 777899999999 888888 6566655544 332100
Q ss_pred eecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCC
Q 005315 396 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 475 (702)
Q Consensus 396 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 475 (702)
+....... .+. ..+ .|...|.+++|+|++ +++++.++
T Consensus 134 ---------------~~~~~~~~-----------------------~~~--~~~-~~~~~v~~~~~~~~~--l~~~~~d~ 170 (342)
T 1yfq_A 134 ---------------DGVIAVKN-----------------------LNS--NNT-KVKNKIFTMDTNSSR--LIVGMNNS 170 (342)
T ss_dssp ---------------TBCEEEEE-----------------------SCS--SSS-SSCCCEEEEEECSSE--EEEEESTT
T ss_pred ---------------cccccccC-----------------------Cee--eEE-eeCCceEEEEecCCc--EEEEeCCC
Confidence 00000000 000 011 257889999999987 88888888
Q ss_pred CCCeEEEEEeec-ccCcCceEEEEEcCCCceeEEEEcc-CCCEEEEEeccCCCceEEEEECCCc------ceeee--ccc
Q 005315 476 PRPDISFYSMRT-AQHAGRVSKLTTLKGKQANALFWSP-SGRFIVLAGLKGFNGQLEFYNVDEL------ETMAT--AEH 545 (702)
Q Consensus 476 ~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~dg~v~i~d~~~~------~~~~~--~~~ 545 (702)
.|++|++++ +... ...........+.+++|+| +|+++++++. +|.|++|+++.. +.... .+.
T Consensus 171 ---~i~i~d~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 171 ---QVQWFRLPLCEDDN--GTIEESGLKYQIRDVALLPKEQEGYACSSI---DGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp ---EEEEEESSCCTTCC--CEEEECSCSSCEEEEEECSGGGCEEEEEET---TSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred ---eEEEEECCcccccc--ceeeecCCCCceeEEEECCCCCCEEEEEec---CCcEEEEEEcCCCcccccccceeeeccc
Confidence 999999976 3321 1122222345799999999 9999999998 999999999765 33332 332
Q ss_pred ---------CceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeee--c-cccEeeEEEeeCCCCCCChhhHHH
Q 005315 546 ---------FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--L-KDHFFQFLWRPRPPSFLTPEKEEE 612 (702)
Q Consensus 546 ---------~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~--~-~~~i~~~~w~p~~~~l~s~~~d~~ 612 (702)
..|++++|+|+|++|++++. |+.|++|++. +..+... + ...+.+++ |++.+|++++.|+.
T Consensus 243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGS-----DGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEET-----TSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccccccccceeEEEEEEcCCCCEEEEecC-----CceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 38999999999999999999 9999999987 5544443 4 67899988 99999999999987
Q ss_pred H
Q 005315 613 I 613 (702)
Q Consensus 613 i 613 (702)
+
T Consensus 316 ~ 316 (342)
T 1yfq_A 316 F 316 (342)
T ss_dssp H
T ss_pred c
Confidence 3
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.1e-25 Score=255.25 Aligned_cols=266 Identities=13% Similarity=0.130 Sum_probs=196.4
Q ss_pred ccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCc-Ccceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCc
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPR 270 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~~~~~-~~~-~v~~i~fSpd--g~~l~t~s~d~~~~~~ 270 (702)
..+.+|...|++++|||+|++||+++.+| |+||+..+ +...+..+ .|. .|.+++|+|+ +++|++++.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D------ 76 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------ 76 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC------
Confidence 45789999999999999999999999999 88999862 23444444 244 5999999998 9999999999
Q ss_pred CCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCcccceEEEcCCC--CcEEEEec-CCeEEEEecCCcccccc
Q 005315 271 DANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTLIDK 345 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d--g~~la~~~-d~~i~v~d~~~~~~~~~ 345 (702)
+.|++||+.+++ .+..+..|...+. +++|+| + ++++++++ |+.|++|++.++.....
T Consensus 77 ----g~I~vwd~~~~~~~~~~~~~~h~~~V~-------------~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 77 ----GKVLIWKEENGRWSQIAVHAVHSASVN-------------SVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp ----SCEEEEEEETTEEEEEEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred ----CeEEEEECCCCcccccccccCCCCCeE-------------EEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 999999999987 6777887877664 799999 9 99999999 99999999987743322
Q ss_pred --eeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccc
Q 005315 346 --KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 423 (702)
Q Consensus 346 --~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 423 (702)
...|...|.+++|+|....... . ....++|.++++++.++.
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~----------~--------------------------~~~~~d~~~l~sgs~dg~- 181 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDG----------E--------------------------HNGTKESRKFVTGGADNL- 181 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------------------------------------------CGGGCCEEEEETTSC-
T ss_pred eEeecCCCceEEEEecCccccccc----------c--------------------------cccCCCCCEEEEEECCCe-
Confidence 2345667999999995211000 0 012445566666666555
Q ss_pred ccccccccEEEEEEecCCcc-eeEEEecCCCCceeEEEEeeC---CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE
Q 005315 424 TKKSTYTGFELFRIKERDIP-IEVLELDNKNDKIIAFAWEPK---GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT 499 (702)
Q Consensus 424 ~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h~~~v~~~~~sp~---g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~ 499 (702)
+.+|+++..... .....+.+|...|.+++|+|+ +++|++++.|+ .|++||+.++...... .+..
T Consensus 182 --------I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg---~I~iwd~~~~~~~~~~-~~~~ 249 (753)
T 3jro_A 182 --------VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR---TCIIWTQDNEQGPWKK-TLLK 249 (753)
T ss_dssp --------EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS---CEEEEEESSSSSCCBC-CBSS
T ss_pred --------EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC---EEEEecCCCCCCccee-EEec
Confidence 667766654332 222356689999999999999 89999999999 9999999865321100 1111
Q ss_pred c--CCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcc
Q 005315 500 L--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE 538 (702)
Q Consensus 500 ~--~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~ 538 (702)
. ....+++++|+|+|+++++++. ||.|++|++....
T Consensus 250 ~~~~~~~v~~l~~spdg~~l~s~s~---Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 250 EEKFPDVLWRASWSLSGNVLALSGG---DNKVTLWKENLEG 287 (753)
T ss_dssp SSCCSSCCCCEEECTTTCCEEEECS---SSCEECCBCCSSS
T ss_pred cCCCCCceEEEEEcCCCCEEEEEcC---CCEEEEEecCCCC
Confidence 1 2346899999999999999988 9999999998543
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.1e-24 Score=230.04 Aligned_cols=273 Identities=10% Similarity=0.055 Sum_probs=195.5
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---EEeeccCCCcccc-------------c--------
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFA-------------V-------- 300 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~---~~~~~~~~~~~~~-------------~-------- 300 (702)
.+.+++|||+|++|++++ + +.|++||+.+|+ .+..+..+..... .
T Consensus 6 p~~~v~~s~dg~~l~~~~-~----------~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAII-K----------NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENK 74 (450)
T ss_dssp CCCEEEECSSSSEEEEEE-T----------TEEEEEEEETTTEEEEEEEEECCC--------------------------
T ss_pred cEEEEEecCCCCEEEEEe-C----------CeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccc
Confidence 478999999999777765 4 589999999999 7776664432000 0
Q ss_pred --------------------CC-CCCCCCcccceEEEcCCCCcEE-EEec-CCeEEEEecC--Cccccccee--eccCCe
Q 005315 301 --------------------GG-TGGVAGVSWPVFRWGGGKDKYF-AKLG-KNMISVYETE--SFTLIDKKS--LKVENV 353 (702)
Q Consensus 301 --------------------~~-~~~~~~~~w~~~~~s~~dg~~l-a~~~-d~~i~v~d~~--~~~~~~~~~--~~~~~v 353 (702)
+. ..+..+ ...+++|+| ++++| ++++ |+.|+||++. ++..+.... .+...|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 75 KLKSNKGDSIKRTAAKVPSPGLGAPPIYS-YIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP 152 (450)
T ss_dssp -------------------------CCCC-CEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred ccccCcCccccccCccccCCCCCCCccCC-ceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence 00 000000 122789999 99996 7787 9999999998 777665543 334679
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEE
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 433 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 433 (702)
.+++|+|++++|++ ++. .+.++.|++........
T Consensus 153 ~~~~~sp~~~~l~~-----~~~--~g~v~~~~~~~~~~~~~--------------------------------------- 186 (450)
T 2vdu_B 153 NAISIAEDDTTVII-----ADK--FGDVYSIDINSIPEEKF--------------------------------------- 186 (450)
T ss_dssp EEEEECTTSSEEEE-----EET--TSEEEEEETTSCCCSSC---------------------------------------
T ss_pred eEEEEcCCCCEEEE-----EeC--CCcEEEEecCCcccccc---------------------------------------
Confidence 99999999999988 433 44556665533221100
Q ss_pred EEEEecCCcceeEEEecCCCCceeEEEEeeC---CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE-cC--CCceeE
Q 005315 434 LFRIKERDIPIEVLELDNKNDKIIAFAWEPK---GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LK--GKQANA 507 (702)
Q Consensus 434 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~---g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~--~~~v~~ 507 (702)
....+.+|...|.+++|+|+ +++|++++.|+ .|++||+.++. .+.. +. ...+.+
T Consensus 187 -----------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~---~i~vwd~~~~~------~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 187 -----------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE---HIKISHYPQCF------IVDKWLFGHKHFVSS 246 (450)
T ss_dssp -----------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS---CEEEEEESCTT------CEEEECCCCSSCEEE
T ss_pred -----------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCC---cEEEEECCCCc------eeeeeecCCCCceEE
Confidence 00113367889999999999 99999999998 99999997654 3333 32 347999
Q ss_pred EEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc---------------------------cCceeeeEECCCCCEE
Q 005315 508 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---------------------------HFMATDVEWDPTGRYV 560 (702)
Q Consensus 508 ~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~---------------------------~~~i~~~~~spdg~~l 560 (702)
++|+ +|++|++++. |+.|++||+.+++.+.... ...+.+++|+|+|++|
T Consensus 247 ~~~s-d~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGG---DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEEC-STTEEEEEES---SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred EEEC-CCCEEEEEeC---CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 9999 9999999998 9999999999887665422 2457899999999999
Q ss_pred EEEE-eecccccccEEEEEe--c-c---ceeeee-ccccEeeEEEeeCCCCCC
Q 005315 561 ATAV-TSVHEMENGFNIWSF--N-G---KLLYRT-LKDHFFQFLWRPRPPSFL 605 (702)
Q Consensus 561 ~t~s-~~~~~~d~~v~iw~~--~-g---~~l~~~-~~~~i~~~~w~p~~~~l~ 605 (702)
++++ . ++.|+||++ . + ..+... ....+.+++|+|++.+++
T Consensus 323 ~~~~~~-----d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ 370 (450)
T 2vdu_B 323 AFFVEA-----TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVT 370 (450)
T ss_dssp EEEETT-----CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEE
T ss_pred EEEECC-----CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEE
Confidence 9999 6 899999999 3 3 222222 227899999999643333
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=2.6e-23 Score=219.27 Aligned_cols=266 Identities=14% Similarity=0.135 Sum_probs=195.5
Q ss_pred cEEEEEeCCc-eEEeecCcCcceeeeec-CCCeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCcEEeecc
Q 005315 216 TYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK 292 (702)
Q Consensus 216 ~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~fSpdg~~l-~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~ 292 (702)
.++++++.++ |.+||.. +++.+..+. +..+.+++|+|+|++| ++++.+ +.|++||+.+++.+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d----------~~i~v~d~~~~~~~~~~~ 71 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVT-SNKVTATIPVGSNPMGAVISPDGTKVYVANAHS----------NDVSIIDTATNNVIATVP 71 (391)
T ss_dssp EEEEEETTTTEEEEEETT-TTEEEEEEECSSSEEEEEECTTSSEEEEEEGGG----------TEEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECC-CCeEEEEeecCCCcceEEECCCCCEEEEECCCC----------CeEEEEECCCCeEEEEEE
Confidence 4677777777 8899999 777777774 5569999999999987 666677 899999999999998888
Q ss_pred CCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEee
Q 005315 293 GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 370 (702)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~ 370 (702)
.+.... +++|+| ++++|+.++ ++.|.+||+.+++.+.... +...+.+++|+|+++.|++.
T Consensus 72 ~~~~v~--------------~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~-- 133 (391)
T 1l0q_A 72 AGSSPQ--------------GVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVT-- 133 (391)
T ss_dssp CSSSEE--------------EEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEE--
T ss_pred CCCCcc--------------ceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEE--
Confidence 766333 789999 999886554 7999999999887765443 33468899999999877542
Q ss_pred cCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005315 371 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 450 (702)
Q Consensus 371 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 450 (702)
++.++ .|.+|+..+.+.+. .+.
T Consensus 134 --~~~~~--~v~~~d~~~~~~~~------------------------------------------------------~~~ 155 (391)
T 1l0q_A 134 --NNGDK--TVSVINTVTKAVIN------------------------------------------------------TVS 155 (391)
T ss_dssp --ETTTT--EEEEEETTTTEEEE------------------------------------------------------EEE
T ss_pred --eCCCC--EEEEEECCCCcEEE------------------------------------------------------EEe
Confidence 22333 45555543221110 011
Q ss_pred CCCCceeEEEEeeCCcEEEEEE-cCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCce
Q 005315 451 NKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQ 528 (702)
Q Consensus 451 ~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~ 528 (702)
. ...+.+++|+|+|+++++++ .++ .|++||++++. .+..+. ...+.+++|+|+|++|++++.+..++.
T Consensus 156 ~-~~~~~~~~~~~dg~~l~~~~~~~~---~v~~~d~~~~~------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 156 V-GRSPKGIAVTPDGTKVYVANFDSM---SISVIDTVTNS------VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp C-CSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTTE------EEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred c-CCCcceEEECCCCCEEEEEeCCCC---EEEEEECCCCe------EEEEEecCCCccceEECCCCCEEEEEecCcCCCc
Confidence 1 34568899999999886554 456 89999997643 333333 346789999999999998873212899
Q ss_pred EEEEECCCcceeeec-ccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc
Q 005315 529 LEFYNVDELETMATA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 529 v~i~d~~~~~~~~~~-~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
|++||+.+++.+... .+..+.+++|+|+|++|+.++.. |+.+++||+...
T Consensus 226 v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~----d~~v~v~d~~~~ 276 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF----XNTVSVIDTATN 276 (391)
T ss_dssp EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT----TTEEEEEETTTT
T ss_pred EEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCC----CCEEEEEECCCC
Confidence 999999988776653 34567899999999988555432 899999998743
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=9.8e-25 Score=230.22 Aligned_cols=262 Identities=10% Similarity=0.064 Sum_probs=166.0
Q ss_pred ccceEEECCCCcEEEEEeCCc-eEEeecCcCcceee-----ee-cCC-CeeEEEecC--------CCCEEEEEcCCCCCC
Q 005315 205 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM-----RY-AHP-QVKLIDFSP--------GEKYLVTYSSHEPSN 268 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~-----~~-~~~-~v~~i~fSp--------dg~~l~t~s~d~~~~ 268 (702)
......+++++.+||+++.|+ |+||+.. ...... .+ +|. .|.+++|+| ||++||+++.|
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~-~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D---- 165 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITK-NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD---- 165 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEE-TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT----
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECC-CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC----
Confidence 334445566788999999999 8999988 554322 22 244 499999998 89999999999
Q ss_pred CcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc-EEEEec-CCeEEEEecCCcccccce
Q 005315 269 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFTLIDKK 346 (702)
Q Consensus 269 ~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~-~la~~~-d~~i~v~d~~~~~~~~~~ 346 (702)
++|+|||+.++..+..+..|...+. +++|+| ++. +|++++ |++|++||+.+++.....
T Consensus 166 ------~tv~~Wd~~~~~~~~~~~~~~~~v~-------------~v~~~p-~~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 166 ------CTLIIWRLTDEGPILAGYPLSSPGI-------------SVQFRP-SNPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp ------SEEEEEEEETTEEEEEEEECSSCEE-------------EEEEET-TEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred ------CeEEEEECCCCceeeeecCCCCCcE-------------EEEECC-CCCceEEecCCCCEEEEEECCCCcccccc
Confidence 9999999998888777777766653 799999 875 788888 999999999876543222
Q ss_pred eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccc
Q 005315 347 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 426 (702)
Q Consensus 347 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 426 (702)
..+....... ... ....+...
T Consensus 226 ~~~~~~~~~~--------~~s-------------------------------------~~~~~~~~-------------- 246 (393)
T 4gq1_A 226 SQTELVKNPW--------LLT-------------------------------------LNTLPLVN-------------- 246 (393)
T ss_dssp -----CSCCC--------SEE-------------------------------------EESGGGC---------------
T ss_pred cccCCcccce--------EEe-------------------------------------ccccccee--------------
Confidence 1110000000 000 00000000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceeEEEEe-eCCcEEEEEEcCCCCCeEEEEEeecccCcCceEE---------
Q 005315 427 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSK--------- 496 (702)
Q Consensus 427 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~--------- 496 (702)
.....+|...+.++.|+ |+|+.+++++.|+ .+++||+..+.....+..
T Consensus 247 -------------------~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~---~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 247 -------------------TCHSSGIASSLANVRWIGSDGSGILAMCKSG---AWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp ------------------------CCSSSCSEEEEETTTTCEEEEECTTS---EEEEEEC-------------------C
T ss_pred -------------------eeecccccccceeeeeecCCCCEEEEEeCCC---CEEEEECccCCCCceEeeecCccccEE
Confidence 01122567788888886 7899999988888 899999865432110000
Q ss_pred ----EEEcC-CCceeEEEEcc--CCCEEEEEeccCCCceEEEEECCCcceee--ecccCceeeeEECCCCCEEEEEEeec
Q 005315 497 ----LTTLK-GKQANALFWSP--SGRFIVLAGLKGFNGQLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSV 567 (702)
Q Consensus 497 ----~~~~~-~~~v~~~~~sp--dg~~l~~~~~~~~dg~v~i~d~~~~~~~~--~~~~~~i~~~~~spdg~~l~t~s~~~ 567 (702)
..... ........|+| ++.++++++. ||.|++||+.+++.+. ..+...|++++|||||++||+++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~---Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~-- 379 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ---HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE-- 379 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETT---TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES--
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECC---CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 00000 01122233444 3345556666 9999999999876654 356789999999999999999976
Q ss_pred ccccccEEEEEecc
Q 005315 568 HEMENGFNIWSFNG 581 (702)
Q Consensus 568 ~~~d~~v~iw~~~g 581 (702)
+++.+|.+.|
T Consensus 380 ----~Gv~lvrL~g 389 (393)
T 4gq1_A 380 ----GSVLLTRLMG 389 (393)
T ss_dssp ----SEEEEEEEGG
T ss_pred ----CCeEEEEEeC
Confidence 6788888765
No 118
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=5e-23 Score=236.31 Aligned_cols=332 Identities=9% Similarity=0.072 Sum_probs=215.2
Q ss_pred cccceEEECCCCcEEEEEeC-Cc------eEEeecCcCcceeeeecC--------------------------CCeeEEE
Q 005315 204 WTESFVQWSPLGTYLATVHR-QG------AAVWGGANTFNRLMRYAH--------------------------PQVKLID 250 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~-~~------i~iw~~~~~~~~~~~~~~--------------------------~~v~~i~ 250 (702)
..+++++|||||++||+++. ++ |.+|+.. +++....+.+ ..|.+++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETT-TCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECC-CCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 46889999999999999987 54 7799998 5554433321 1278999
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec
Q 005315 251 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 328 (702)
Q Consensus 251 fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~ 328 (702)
|||||++|++++. +.|++||+.++. .++.+..+...+. .++||| ||++||+++
T Consensus 116 ~SpDg~~l~~~~~-----------~~i~~~d~~~~~~~~~~~l~~~~~~~~-------------~~~~SP-DG~~la~~~ 170 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-----------GELYLYDLKQEGKAAVRQLTHGEGFAT-------------DAKLSP-KGGFVSFIR 170 (741)
T ss_dssp ECTTSSEEEEEET-----------TEEEEEESSSCSTTSCCBCCCSSSCEE-------------EEEECT-TSSEEEEEE
T ss_pred ECCCCCEEEEEeC-----------CcEEEEECCCCCcceEEEcccCCcccc-------------cccCCC-CCCEEEEEe
Confidence 9999999999885 479999998873 3445555543332 689999 999999999
Q ss_pred CCeEEEEecCCcccccceeeccC----------------CeeEEEeCCCCCeEEEEeecC--------------------
Q 005315 329 KNMISVYETESFTLIDKKSLKVE----------------NVMDFSWSPTDPIISLFVPEL-------------------- 372 (702)
Q Consensus 329 d~~i~v~d~~~~~~~~~~~~~~~----------------~v~~~~~sp~~~~la~~~~~~-------------------- 372 (702)
++.|.+|++.++........+.. .+..++|||||++|++.....
T Consensus 171 ~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 171 GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 88999999988764432211211 147899999999999853221
Q ss_pred ------CCCCCCcEEEEEecCC-cceeeeee--ecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005315 373 ------GGGNQPARVSLVQIPS-KEELRQKN--LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 443 (702)
Q Consensus 373 ------~~~~~~~~i~~~~~~~-~~~~~~~~--~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 443 (702)
+..+....|++|+..+ .+...... ........+.| |+|++|++...+... ....+.+|++....
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~----~~~~i~~~d~~~g~-- 323 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ----KKLDLVEVTLASNQ-- 323 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS----SEEEEEEEETTTCC--
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC----CeEEEEEEECCCCc--
Confidence 0011334788888876 55332211 12233456789 999999987653210 11224455544322
Q ss_pred eeEEEecCCC-C---ceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEE-EEccCCCE
Q 005315 444 IEVLELDNKN-D---KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANAL-FWSPSGRF 516 (702)
Q Consensus 444 ~~~~~l~~h~-~---~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~-~~spdg~~ 516 (702)
...+ +..+. . .+.+++|+|+|++++++..++ .+.||.+.... . ...+.. ..+..+ .|||+|+.
T Consensus 324 ~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~---~---~~~l~~~~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 324 QRVL-AHETSPTWVPLHNSLRFLDDGSILWSSERTG---FQHLYRIDSKG---K---AAALTHGNWSVDELLAVDEKAGL 393 (741)
T ss_dssp EEEE-EEEECSSCCCCCSCCEECTTSCEEEEECTTS---SCEEEEECSSS---C---EEESCCSSSCEEEEEEEETTTTE
T ss_pred eEEE-EEcCCCCcCCcCCceEECCCCeEEEEecCCC---ccEEEEEcCCC---C---eeeeeecceEEEeEeEEeCCCCE
Confidence 2111 11222 2 456899999999777776666 67777764221 1 333433 356666 59999998
Q ss_pred EEEEeccCCCc--eEEEEECCC-cceeee-cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 517 IVLAGLKGFNG--QLEFYNVDE-LETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 517 l~~~~~~~~dg--~v~i~d~~~-~~~~~~-~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
|++.+.. ++ .+++|++.. +..... .....+..++|||||++|++...+. .....+.+|+..+
T Consensus 394 l~~~~~~--~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~-~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 394 AYFRAGI--ESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNN-STPPQIELFRANG 459 (741)
T ss_dssp EEEEECS--SCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEET-TEEEEEEEEETTS
T ss_pred EEEEEeC--CCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCC-CCCCeEEEEEcCC
Confidence 8766542 33 888998763 332222 2245678999999999998876630 0124677777654
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.6e-24 Score=246.28 Aligned_cols=243 Identities=16% Similarity=0.299 Sum_probs=192.6
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCC
Q 005315 242 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 319 (702)
Q Consensus 242 ~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~ 319 (702)
|...|.+++|||+|++|++++.+ +.|+|||+. +++.+..+.+|...+. +++|+|
T Consensus 8 H~~~V~~l~~s~dg~~latg~~d----------g~I~vwd~~~~~~~~~~~l~~h~~~V~-------------~l~~s~- 63 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSD----------KTIKIFEVEGETHKLIDTLTGHEGPVW-------------RVDWAH- 63 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETT----------TEEEEEEEETTEEEEEEEECCCSSCEE-------------EEEECC-
T ss_pred CcceeEEEEECCCCCeEEEEECC----------CcEEEEecCCCCCccceeccCCcCceE-------------EEEecC-
Confidence 44469999999999999999999 999999998 5677888988887764 799998
Q ss_pred C--CcEEEEec-CCeEEEEecCCcc--cccceeeccCCeeEEEeCCC--CCeEEEEeecCCCCCCCcEEEEEecCCccee
Q 005315 320 K--DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEEL 392 (702)
Q Consensus 320 d--g~~la~~~-d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (702)
+ +++|++++ ||.|++|++.++. .+.....|...|.+++|+|+ ++.+++ ++.++.+++|.+. ...
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s-----gs~dg~I~vwdl~--~~~-- 134 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-----ASSDGKVSVVEFK--ENG-- 134 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-----EETTSEEEEEECC--SSS--
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEE-----EeCCCcEEEEEee--cCC--
Confidence 8 99999999 9999999999875 44444456778999999998 888888 5566655544332 110
Q ss_pred eeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee---------
Q 005315 393 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP--------- 463 (702)
Q Consensus 393 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp--------- 463 (702)
. .....+.+|...|.+++|+|
T Consensus 135 -------------------------------------------------~-~~~~~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 135 -------------------------------------------------T-TSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp -------------------------------------------------C-CCCEEEECCSSCEEEEEECCCC-------
T ss_pred -------------------------------------------------C-cceeEeecCCCceEEEEecCccccccccc
Confidence 0 00122346788899999999
Q ss_pred ----CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEEEEccC---CCEEEEEeccCCCceEEEEEC
Q 005315 464 ----KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPS---GRFIVLAGLKGFNGQLEFYNV 534 (702)
Q Consensus 464 ----~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spd---g~~l~~~~~~~~dg~v~i~d~ 534 (702)
++.+|++++.|+ .|++||++++... ...+..+.+ ..+++++|+|+ |++|++++. ||.|++||+
T Consensus 165 ~~~~d~~~l~sgs~dg---~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~---Dg~I~iwd~ 236 (753)
T 3jro_A 165 NGTKESRKFVTGGADN---LVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ---DRTCIIWTQ 236 (753)
T ss_dssp --CGGGCCEEEEETTS---CEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES---SSCEEEEEE
T ss_pred ccCCCCCEEEEEECCC---eEEEEeccCCccc--ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec---CCEEEEecC
Confidence 589999999999 9999999865422 234555554 47999999999 899999998 999999999
Q ss_pred CCcc-----eee--ecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 535 DELE-----TMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 535 ~~~~-----~~~--~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
.++. .+. ..+...+++++|+|+|++|++++. |+.|++|++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-----Dg~I~vwd~~ 284 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-----DNKVTLWKEN 284 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS-----SSCEECCBCC
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC-----CCEEEEEecC
Confidence 8753 121 235678999999999999999999 9999999986
No 120
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=3.9e-23 Score=245.58 Aligned_cols=354 Identities=9% Similarity=0.006 Sum_probs=232.3
Q ss_pred ccccccCCCCCceEEEEeC-----CceEEEecCCCCCCCcccccCCCccc-------ceEEECCCCcEEEEEeCC----c
Q 005315 162 LQKWLTDEKARDQFVIRSG-----TDTEVLWNDARHLKPEPVYKRSYWTE-------SFVQWSPLGTYLATVHRQ----G 225 (702)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~v-------~~v~~Spdg~~lat~~~~----~ 225 (702)
..+..++|+|+........ +..+.+|+.. ......++.|...+ .+++|||||+++++++.+ +
T Consensus 55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~--~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~ 132 (1045)
T 1k32_A 55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE--NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS 132 (1045)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT--TTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTT
T ss_pred ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC--CCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcc
Confidence 4455667888865554432 2345578773 33356778888888 899999999977777644 2
Q ss_pred ---eEEeecCcCcceeeeecC--------------------------------------------------C-CeeEEEe
Q 005315 226 ---AAVWGGANTFNRLMRYAH--------------------------------------------------P-QVKLIDF 251 (702)
Q Consensus 226 ---i~iw~~~~~~~~~~~~~~--------------------------------------------------~-~v~~i~f 251 (702)
+.+|+.. ++.......+ . .+.++.|
T Consensus 133 ~~~l~~~~~~-~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~ 211 (1045)
T 1k32_A 133 MTCLYRVEND-GINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVI 211 (1045)
T ss_dssp CCEEEEEEGG-GTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEE
T ss_pred cceEEEEECC-CCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEE
Confidence 6677776 3332211111 1 1444455
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-CcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCC
Q 005315 252 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKN 330 (702)
Q Consensus 252 Spdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~ 330 (702)
+++ ..+++++.+ +.+.||.+.. +...+.+..+... ..+.||| ||++|+++.++
T Consensus 212 s~d-~l~~~~~~d----------g~~~l~~~~~~g~~~~~l~~~~~~--------------~~~~~Sp-DG~~la~~~~~ 265 (1045)
T 1k32_A 212 VGH-RIYFITDID----------GFGQIYSTDLDGKDLRKHTSFTDY--------------YPRHLNT-DGRRILFSKGG 265 (1045)
T ss_dssp ETT-EEEEEECTT----------SSCEEEEEETTSCSCEECCCCCSS--------------CEEEEEE-SSSCEEEEETT
T ss_pred eCC-EEEEEEecc----------CceEEEEEeCCCCcceEecCCCCc--------------ceeeEcC-CCCEEEEEeCC
Confidence 554 333333333 4556666532 3344445444322 2679999 99999998999
Q ss_pred eEEEEecCCcccccceee-----------ccCCeeEEEeC-CCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec
Q 005315 331 MISVYETESFTLIDKKSL-----------KVENVMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 398 (702)
Q Consensus 331 ~i~v~d~~~~~~~~~~~~-----------~~~~v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 398 (702)
.|.+|++....+. .... +...+..++|| |+|+.|++ ++ ...+++++......... ...
T Consensus 266 ~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~-----~~---~~~i~~~~~~~~~~~~~-~~~ 335 (1045)
T 1k32_A 266 SIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF-----VS---RGQAFIQDVSGTYVLKV-PEP 335 (1045)
T ss_dssp EEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE-----EE---TTEEEEECTTSSBEEEC-SCC
T ss_pred EEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEE-----EE---cCEEEEEcCCCCceEEc-cCC
Confidence 9999998543322 1111 22358899999 99999998 33 34688888766543321 112
Q ss_pred cc-ccceeEEccCCCEEEEEEcccccccccccccEE-EEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC
Q 005315 399 SV-SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE-LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 476 (702)
Q Consensus 399 ~~-~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 476 (702)
.. ....+.|+ +|+.|++.+.+.. +. +|++.. ... ..+.+|...+.+++|||+|++|++++.++
T Consensus 336 ~~~~~~~~~~s-dg~~l~~~s~~~~---------l~~~~d~~~--~~~--~~l~~~~~~~~~~~~SpDG~~la~~~~~~- 400 (1045)
T 1k32_A 336 LRIRYVRRGGD-TKVAFIHGTREGD---------FLGIYDYRT--GKA--EKFEENLGNVFAMGVDRNGKFAVVANDRF- 400 (1045)
T ss_dssp SCEEEEEECSS-SEEEEEEEETTEE---------EEEEEETTT--CCE--EECCCCCCSEEEEEECTTSSEEEEEETTS-
T ss_pred CcceEEeeeEc-CCCeEEEEECCCc---------eEEEEECCC--CCc--eEecCCccceeeeEECCCCCEEEEECCCC-
Confidence 22 34456899 9999998876322 33 444332 222 33447778999999999999999999888
Q ss_pred CCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEecc-------CCCceEEEEECCCcceeee-cccCce
Q 005315 477 RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLK-------GFNGQLEFYNVDELETMAT-AEHFMA 548 (702)
Q Consensus 477 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~-------~~dg~v~i~d~~~~~~~~~-~~~~~i 548 (702)
.|++||+.++.. ..+..-+...+.+++|||||++|++++.. ..++.|++||+.+++.... .+...+
T Consensus 401 --~v~~~d~~tg~~----~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~ 474 (1045)
T 1k32_A 401 --EIMTVDLETGKP----TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 474 (1045)
T ss_dssp --EEEEEETTTCCE----EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBE
T ss_pred --eEEEEECCCCce----EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCccc
Confidence 999999976542 23332334467899999999999888751 1135999999998774433 445667
Q ss_pred eeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 549 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 549 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
..++|+|||++|++++. ++...+|+..
T Consensus 475 ~~~~~spdG~~l~~~s~-----~~~~~~~~~~ 501 (1045)
T 1k32_A 475 YAPAFDADSKNLYYLSY-----RSLDPSPDRV 501 (1045)
T ss_dssp EEEEECTTSCEEEEEES-----CCCCCEECSS
T ss_pred CCceEcCCCCEEEEEec-----ccCCcCcchh
Confidence 88999999999999988 6777778754
No 121
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=7.8e-23 Score=216.97 Aligned_cols=306 Identities=13% Similarity=0.113 Sum_probs=208.2
Q ss_pred ccccccccCCCCCceEEEEe----CCc----eEEEecC--CCCCCCc--ccccCCCcccceEEECC--------------
Q 005315 160 ENLQKWLTDEKARDQFVIRS----GTD----TEVLWND--ARHLKPE--PVYKRSYWTESFVQWSP-------------- 213 (702)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~----~~~----~~~~w~~--~~~~~~~--~~~~~~~~~v~~v~~Sp-------------- 213 (702)
-++..|-. .|.+.++... +++ ...+|+. . .++.+ ..+.+|...+..+++++
T Consensus 65 ~~~~~w~~--~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 65 VQPAAWSA--LGIDAVVVGQVTPNPDGSYNVAYQLVDTGGA-PGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp CCHHHHHT--TTCCEEEEEEEEECTTSCEEEEEEEEECSSS-TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCHHHHHh--cCCCEEEEEEEEECCCCeEEEEEEEEeCCCC-CCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35566654 4555554433 345 5679998 4 34444 44788888888888775
Q ss_pred CCcEEEEEeCC------c-eEEeecCcCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005315 214 LGTYLATVHRQ------G-AAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 285 (702)
Q Consensus 214 dg~~lat~~~~------~-i~iw~~~~~~~~~~~~-~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g 285 (702)
.++.||+++.+ + |.+||.. +....... +...+.+++|||||++|++++.+. +...|++||+.++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-------~~~~i~~~d~~tg 213 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-------GRSALVIQTLANG 213 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTT-------SSCEEEEEETTTC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-------CCcEEEEEECCCC
Confidence 26777777653 4 8899998 43332222 334599999999999999999771 1148999999998
Q ss_pred cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE-Eec-C--CeEEEEecCCcccccceeeccCCeeEEEeCCC
Q 005315 286 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA-KLG-K--NMISVYETESFTLIDKKSLKVENVMDFSWSPT 361 (702)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la-~~~-d--~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~ 361 (702)
+... +..+...+. +++||| ||++|+ +++ + ..|.+|++.+++.. ....+...+.+++|+|+
T Consensus 214 ~~~~-l~~~~~~~~-------------~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 214 AVRQ-VASFPRHNG-------------APAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp CEEE-EECCSSCEE-------------EEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTT
T ss_pred cEEE-eecCCCccc-------------CEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCCCcccceEECCC
Confidence 8754 444443332 789999 999888 444 4 45999999877653 23334456889999999
Q ss_pred CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCC
Q 005315 362 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD 441 (702)
Q Consensus 362 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 441 (702)
|+.|++. +..++...||+++....+.
T Consensus 278 g~~l~~~----s~~~g~~~i~~~d~~~~~~-------------------------------------------------- 303 (415)
T 2hqs_A 278 SQNLAFT----SDQAGRPQVYKVNINGGAP-------------------------------------------------- 303 (415)
T ss_dssp SSEEEEE----ECTTSSCEEEEEETTSSCC--------------------------------------------------
T ss_pred CCEEEEE----ECCCCCcEEEEEECCCCCE--------------------------------------------------
Confidence 9988873 1124555676666533221
Q ss_pred cceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEE
Q 005315 442 IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLA 520 (702)
Q Consensus 442 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~ 520 (702)
..+..|...+.+++|+|+|++|++++.+.....|.+|++.++. . ..+. ...+.+++|+|+|++|+++
T Consensus 304 -----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~------~-~~l~~~~~~~~~~~spdg~~l~~~ 371 (415)
T 2hqs_A 304 -----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------V-QVLSSTFLDETPSLAPNGTMVIYS 371 (415)
T ss_dssp -----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------E-EECCCSSSCEEEEECTTSSEEEEE
T ss_pred -----EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC------E-EEecCCCCcCCeEEcCCCCEEEEE
Confidence 1122335677889999999999998876333489999987543 2 2233 2368899999999999998
Q ss_pred eccCCCceEEEEECCCcceee-ecccCceeeeEECCCCC
Q 005315 521 GLKGFNGQLEFYNVDELETMA-TAEHFMATDVEWDPTGR 558 (702)
Q Consensus 521 ~~~~~dg~v~i~d~~~~~~~~-~~~~~~i~~~~~spdg~ 558 (702)
+.......|++||+.+..... ..+...|.+++|+|.-.
T Consensus 372 s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 372 SSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred EcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 862111289999998655443 35568899999999754
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=1.5e-22 Score=216.61 Aligned_cols=290 Identities=13% Similarity=0.104 Sum_probs=209.8
Q ss_pred cccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee------cCC-CeeEEEecCCCCEEEEEcCCCCCCC
Q 005315 198 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY------AHP-QVKLIDFSPGEKYLVTYSSHEPSNP 269 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~------~~~-~v~~i~fSpdg~~l~t~s~d~~~~~ 269 (702)
.+..+ ..+.+++|+|++.++++++.++ |.+||.. +++.+... .|. .|.+++|+|+++++++++.+
T Consensus 118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d----- 190 (433)
T 3bws_A 118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDIN-SGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA----- 190 (433)
T ss_dssp EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETT-TCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----
T ss_pred EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECC-CCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----
Confidence 34443 3466999999888888887777 9999998 66665522 233 49999999999999999999
Q ss_pred cCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE-Eec-CCeEEEEecCCccccccee
Q 005315 270 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA-KLG-KNMISVYETESFTLIDKKS 347 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la-~~~-d~~i~v~d~~~~~~~~~~~ 347 (702)
+.|++||+.+++.+..+..+...+. +++|+| ++++++ ++. ++.|.+||+.+++.+....
T Consensus 191 -----~~v~~~d~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 251 (433)
T 3bws_A 191 -----NAVHVFDLKTLAYKATVDLTGKWSK-------------ILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTD 251 (433)
T ss_dssp -----TEEEEEETTTCCEEEEEECSSSSEE-------------EEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred -----CEEEEEECCCceEEEEEcCCCCCee-------------EEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence 9999999999999988887665542 789999 999774 454 8999999999887654433
Q ss_pred eccCCeeEEEeCCCCCeEEEEeecCCCC-CCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEE-ccccccc
Q 005315 348 LKVENVMDFSWSPTDPIISLFVPELGGG-NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV-DRYTKTK 425 (702)
Q Consensus 348 ~~~~~v~~~~~sp~~~~la~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~-~~~~~~~ 425 (702)
. ...+.+++|+|+++.|++.....+.. .....|.+|+..+.+.+.... .......+.|+|+|+++++.. .++.
T Consensus 252 ~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~--- 326 (433)
T 3bws_A 252 K-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSK--- 326 (433)
T ss_dssp C-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTE---
T ss_pred C-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCE---
Confidence 2 34589999999999888732211000 034578888887766544432 223445678999998776654 4433
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCC------------CeEEEEEeecccCcCc
Q 005315 426 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR------------PDISFYSMRTAQHAGR 493 (702)
Q Consensus 426 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~------------~~v~i~d~~~~~~~~~ 493 (702)
+.+|++... .... .+ .+...+.+++|+|+|+++++++.+... ..|++||+.++.
T Consensus 327 ------v~v~d~~~~-~~~~--~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---- 392 (433)
T 3bws_A 327 ------IEVYDLKEK-KVQK--SI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---- 392 (433)
T ss_dssp ------EEEEETTTT-EEEE--EE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE----
T ss_pred ------EEEEECCCC-cEEE--Ee-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc----
Confidence 778887642 2222 22 357889999999999999988874211 189999986544
Q ss_pred eEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 494 VSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 494 ~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
.+..+. ...+.+++|+|+|++|++++. .++.|++|+++.
T Consensus 393 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~d~~i~v~~~~~ 432 (433)
T 3bws_A 393 --VKEFWEAGNQPTGLDVSPDNRYLVISDF--LDHQIRVYRRDG 432 (433)
T ss_dssp --EEEEEECSSSEEEEEECTTSCEEEEEET--TTTEEEEEEETT
T ss_pred --EEEEecCCCCCceEEEcCCCCEEEEEEC--CCCeEEEEEecC
Confidence 444443 346899999999999988762 189999999863
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.8e-23 Score=216.46 Aligned_cols=273 Identities=12% Similarity=0.037 Sum_probs=193.4
Q ss_pred ceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--
Q 005315 207 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-- 283 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~-- 283 (702)
....+.+++.+||+|+.|+ |++||.. +++.+..+....|.++.|+|+ +++++.| ++|++|+..
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~-~~~~~~~~~~~~v~~~~~~~~---~~s~s~D----------~~i~~w~~~~~ 105 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLK-DSKTITTITTPNPRTGGEHPA---IISRGPC----------NRLLLLYPGNQ 105 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEES-SSSCEEEEEEECCCTTCCCCS---EEEECST----------TEEEEEETTTE
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECC-CCcEEEEEecCCceeeeeCCc---eEEecCC----------CeEEEEEccCc
Confidence 3345668899999999999 8899999 888777777667999999998 9999999 999999754
Q ss_pred -------CCcEEeecc-CCCcccccCCCCCCCCcccceEEEcCC-CCcEEEEec-CCeEEEEecCCcccccceee-ccCC
Q 005315 284 -------TGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLG-KNMISVYETESFTLIDKKSL-KVEN 352 (702)
Q Consensus 284 -------~g~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~s~~-dg~~la~~~-d~~i~v~d~~~~~~~~~~~~-~~~~ 352 (702)
+++.++.+. .|...+. +++|+|. ++++|++++ |+.|++||+.+++.+..... +...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 106 ITILDSKTNKVLREIEVDSANEII-------------YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp EEEEETTTCCEEEEEECCCSSCEE-------------EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred eEEeecCCcceeEEeecCCCCCEE-------------EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 445444444 3333332 6788873 577899888 99999999998876533322 2335
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccE
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 432 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 432 (702)
+.+++|+|++.+|++ ++.++.+++|. +.+.+
T Consensus 173 i~~~~~~pdg~~las-----g~~dg~i~iwd--~~~~~------------------------------------------ 203 (343)
T 3lrv_A 173 YSSGVLHKDSLLLAL-----YSPDGILDVYN--LSSPD------------------------------------------ 203 (343)
T ss_dssp CCEEEECTTSCEEEE-----ECTTSCEEEEE--SSCTT------------------------------------------
T ss_pred eEEEEECCCCCEEEE-----EcCCCEEEEEE--CCCCC------------------------------------------
Confidence 888899998888888 66666555443 22211
Q ss_pred EEEEEecCCcceeEEEecC-CCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--Cce--eE
Q 005315 433 ELFRIKERDIPIEVLELDN-KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQA--NA 507 (702)
Q Consensus 433 ~l~~l~~~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v--~~ 507 (702)
.. ...+.. |..+|.+++|+|+|.+|++++ ++ .|++||+++...... +..+.. ..+ .+
T Consensus 204 ---------~~--~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~---~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 204 ---------QA--SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ---TVVCFDLRKDVGTLA---YPTYTIPEFKTGTVT 265 (343)
T ss_dssp ---------SC--CEECCCCTTSCEEEEEECTTSSEEEEEE-SS---BEEEEETTSSTTCBS---SCCCBC-----CCEE
T ss_pred ---------CC--ccEEeccCCCCEEEEEEeCCCCEEEEEe-CC---eEEEEEcCCCCccee---ecccccccccccceE
Confidence 10 012334 889999999999999999998 55 799999976542111 111111 223 36
Q ss_pred EEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECC---CCCEEEEEEeecccccccEEEEEeccc
Q 005315 508 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDP---TGRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 508 ~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~sp---dg~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
++|+|+|++|++++.+ ++.+++|++.+....... ..+..+.|+| +++.|++++. |+.+.++-..+.
T Consensus 266 ~~~~~~g~~l~~~s~~--d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-----d~~~~~~~~~~~ 334 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNE--SNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCG-----DGGIAAILKTND 334 (343)
T ss_dssp EEECTTSSEEEEEETT--TTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEE-----TTEEEEEEECSS
T ss_pred EEECCCCCEEEEecCC--CCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEec-----CCceEEEEecCC
Confidence 9999999999997631 688999999754332222 5677899999 9999999999 899998876544
No 124
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=4.2e-22 Score=228.68 Aligned_cols=341 Identities=11% Similarity=0.041 Sum_probs=225.7
Q ss_pred ccccccCCCCCceEEEEeCCc-----eEEEecCCCCCCCcccccCCC------------------------cccceEEEC
Q 005315 162 LQKWLTDEKARDQFVIRSGTD-----TEVLWNDARHLKPEPVYKRSY------------------------WTESFVQWS 212 (702)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~------------------------~~v~~v~~S 212 (702)
......+|+|+..+.....++ ...+|+. ..++....+..+. ..+.+++||
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDI-GSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEET-TTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEEC-CCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 344556778876555444254 6678987 4455544444332 348999999
Q ss_pred CCCcEEEEEeCCceEEeecCcCc---ceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEE
Q 005315 213 PLGTYLATVHRQGAAVWGGANTF---NRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 288 (702)
Q Consensus 213 pdg~~lat~~~~~i~iw~~~~~~---~~~~~~~~-~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~ 288 (702)
|||++|++++...|.+|++. ++ .......+ ..+.+++|||||++|++++.+ .|++||+.+++..
T Consensus 118 pDg~~l~~~~~~~i~~~d~~-~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~-----------~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 118 PDAQRLLFPLGGELYLYDLK-QEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR-----------NLWVIDLASGRQM 185 (741)
T ss_dssp TTSSEEEEEETTEEEEEESS-SCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT-----------EEEEEETTTTEEE
T ss_pred CCCCEEEEEeCCcEEEEECC-CCCcceEEEcccCCcccccccCCCCCCEEEEEeCC-----------cEEEEecCCCCEE
Confidence 99999999998669999998 55 33322233 459999999999999998744 7999999888776
Q ss_pred eeccCCCcccccCCCCCC----CCcccceEEEcCCCCcEEEEec-CC---------------------------------
Q 005315 289 RDFKGSADEFAVGGTGGV----AGVSWPVFRWGGGKDKYFAKLG-KN--------------------------------- 330 (702)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~----~~~~w~~~~~s~~dg~~la~~~-d~--------------------------------- 330 (702)
+....+...+..+....+ .+ ....+.||| ||++|++++ ++
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~-~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMD-RHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSC-CCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EeccCCccceeccccceeeeeccc-cccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 655444321100000000 00 001589999 999999886 44
Q ss_pred eEEEEecCC-ccccccee--eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc----ccc
Q 005315 331 MISVYETES-FTLIDKKS--LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV----SDC 403 (702)
Q Consensus 331 ~i~v~d~~~-~~~~~~~~--~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~ 403 (702)
.|.+|++.+ ++...... .+...+..++| |||+.|++..... ......|++|+..+.+.......... ...
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR--DQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET--TSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc--cCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 788899887 66432211 13345889999 9999999855433 44567899999887764433222211 223
Q ss_pred eeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEE-EEeeCCcEEEEEEcCCCCCeEEE
Q 005315 404 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF-AWEPKGHRFAVIHGDSPRPDISF 482 (702)
Q Consensus 404 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~-~~sp~g~~l~~~~~d~~~~~v~i 482 (702)
.+.|+|+|++++++..++. ..||.++..+. ...+..|...+.++ +|+|+|+.+++.+.+.....++|
T Consensus 341 ~~~~spdg~~~~~~~~~g~---------~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l 408 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGF---------QHLYRIDSKGK---AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQI 408 (741)
T ss_dssp CCEECTTSCEEEEECTTSS---------CEEEEECSSSC---EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEE
T ss_pred ceEECCCCeEEEEecCCCc---------cEEEEEcCCCC---eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEE
Confidence 5789999997666655443 57888775433 35566777888887 59999998887776543336889
Q ss_pred EEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccC-CCceEEEEECCCc
Q 005315 483 YSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKG-FNGQLEFYNVDEL 537 (702)
Q Consensus 483 ~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~-~dg~v~i~d~~~~ 537 (702)
|++..... ....+. ...+..++|||||++|++...+. ..+.+.+++..+.
T Consensus 409 ~~~~~~g~-----~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 409 YAVPLQGG-----QPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEETTCC-----CCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEEEcCCC-----CeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 99864221 122333 34578999999999998875421 1367899988644
No 125
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.4e-23 Score=240.37 Aligned_cols=332 Identities=11% Similarity=0.146 Sum_probs=206.0
Q ss_pred ccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CC----CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005315 205 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP----QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 278 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~----~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~ 278 (702)
...+++|||||+++++ +.++ |.+|+.. +++....+. +. .|.+++|||||++|++++.+... ......+.|+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~-~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~-~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI-YQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC-SSSCCCSEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECC-CCcEEEEeccccccccccceEEECCCCCEEEEEecCccc-eeecceeeEE
Confidence 4678999999998877 5666 8999998 666555553 33 38999999999999999765211 1111226899
Q ss_pred EEEccCCcEEeeccCCC---cccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCC---
Q 005315 279 IFDVRTGKVMRDFKGSA---DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVEN--- 352 (702)
Q Consensus 279 vwd~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~--- 352 (702)
+||+.+++. +.+.... ..+. .++||| ||++||+++++.|.+|++.++........+...
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~-------------~~~~SP-dG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQ-------------YAGWGP-KGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCS-------------BCCBCS-STTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred EEECCCCce-EeccCCcccccccc-------------ccEECC-CCCEEEEEECCeEEEEECCCCceEEEecCCCCCceE
Confidence 999988876 3333221 1121 579999 999999999999999999887654322222222
Q ss_pred ---------------eeEEEeCCCCCeEEEEeecC---------------------------CCCCCCcEEEEEecCCcc
Q 005315 353 ---------------VMDFSWSPTDPIISLFVPEL---------------------------GGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 353 ---------------v~~~~~sp~~~~la~~~~~~---------------------------~~~~~~~~i~~~~~~~~~ 390 (702)
+.+++|||||+.|++..... +..+....|++|+..+.+
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 37899999999999854321 001123478888887665
Q ss_pred eeeeeeec------ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce----eEEE
Q 005315 391 ELRQKNLF------SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI----IAFA 460 (702)
Q Consensus 391 ~~~~~~~~------~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v----~~~~ 460 (702)
........ ......+.|+|||++|++...+.. ....+.+|++.... ...+....+...+ .+++
T Consensus 240 ~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 240 HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ-----NVSILTLCDATTGV--CTKKHEDESEAWLHRQNEEPV 312 (723)
T ss_dssp CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS-----CEEEEEEEETTTCC--EEEEEEEECSSCCCCCCCCCE
T ss_pred eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC-----CeEEEEEEeCCCCc--ceEEEEeccCCEEeccCCCce
Confidence 32222111 223345789999998877665421 11224555554332 2222111233443 3789
Q ss_pred EeeCCcEEEEE-EcCCC----CCeEEEEE-eecccCcCceEEEEEcCC--Ccee-EEEEccCCCEEEEEeccCCCceEEE
Q 005315 461 WEPKGHRFAVI-HGDSP----RPDISFYS-MRTAQHAGRVSKLTTLKG--KQAN-ALFWSPSGRFIVLAGLKGFNGQLEF 531 (702)
Q Consensus 461 ~sp~g~~l~~~-~~d~~----~~~v~i~d-~~~~~~~~~~~~~~~~~~--~~v~-~~~~spdg~~l~~~~~~~~dg~v~i 531 (702)
|||||+.|++. +.... ...|.+|+ ..++... ....+.. ..+. .++|||+|++|++.+.....+.+.+
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND----NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC----CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc----ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 99999988876 43221 12466666 2222200 0122222 2344 3799999999987765111178889
Q ss_pred EECCCc---ceee-ec---ccCceeeeEECCCCCEEEEEEe
Q 005315 532 YNVDEL---ETMA-TA---EHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 532 ~d~~~~---~~~~-~~---~~~~i~~~~~spdg~~l~t~s~ 565 (702)
|+++.. .... +. +...+..++|||||++|+....
T Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 988632 1211 11 3456889999999999887655
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.1e-21 Score=214.63 Aligned_cols=333 Identities=15% Similarity=0.183 Sum_probs=233.9
Q ss_pred EECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc--cCC
Q 005315 210 QWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV--RTG 285 (702)
Q Consensus 210 ~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~--~~g 285 (702)
+|+|+|.++++.+.++ |.+||.. +++.+.++. +..+.+++|||||++|++++.+ +.|.+||+ .++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d----------~~V~v~D~~~~t~ 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGD-SKKIVKVIDTGYAVHISRMSASGRYLLVIGRD----------ARIDMIDLWAKEP 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETT-TCCEEEEEECSTTEEEEEECTTSCEEEEEETT----------SEEEEEETTSSSC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECC-CceEEEEEecCcccceEEECCCCCEEEEECCC----------CeEEEEECcCCCC
Confidence 4899999999998888 8899999 888888876 3348999999999999999998 89999999 899
Q ss_pred cEEeeccCCCcccccCCCCCCCCcccceEEEcC--C-CCcEEEEec--CCeEEEEecCCcccccceee----------cc
Q 005315 286 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG--G-KDKYFAKLG--KNMISVYETESFTLIDKKSL----------KV 350 (702)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~--~-dg~~la~~~--d~~i~v~d~~~~~~~~~~~~----------~~ 350 (702)
+.+.++..+.... .++||| + ||+++++++ +++|.|||..+++++..... |.
T Consensus 213 ~~~~~i~~g~~p~--------------~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 213 TKVAEIKIGIEAR--------------SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp EEEEEEECCSEEE--------------EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred cEEEEEecCCCcc--------------eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccccc
Confidence 9888887655443 688986 1 578888776 89999999998887655433 12
Q ss_pred C-CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee-cccccceeEEccCCCEEEEEEc-cccccccc
Q 005315 351 E-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-FSVSDCKMYWQSSGDYLAVKVD-RYTKTKKS 427 (702)
Q Consensus 351 ~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~ 427 (702)
. .+..+.++|++..+++. ......|++++....+.+....+ .......+.|+|+|++++++.. +++
T Consensus 279 ~~~v~~i~~s~~~~~~~vs------~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~----- 347 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVN------VKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK----- 347 (543)
T ss_dssp CCCEEEEEECSSSSEEEEE------ETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE-----
T ss_pred CCceEEEEECCCCCEEEEE------ECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe-----
Confidence 2 58899999988776652 23456788888876554331111 1223345789999999887765 333
Q ss_pred ccccEEEEEEecCCcceeEEEec--CCCCceeEEEEeeC-CcEEEEEE-cCCCCCeEEEEEeecccCc-CceEEEEEcCC
Q 005315 428 TYTGFELFRIKERDIPIEVLELD--NKNDKIIAFAWEPK-GHRFAVIH-GDSPRPDISFYSMRTAQHA-GRVSKLTTLKG 502 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~--~h~~~v~~~~~sp~-g~~l~~~~-~d~~~~~v~i~d~~~~~~~-~~~~~~~~~~~ 502 (702)
+.+|++.... ....+... .|.+....+ ++|+ |..+++++ +++ +|.+|++.+.... ...+.+.++..
T Consensus 348 ----v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~---~V~v~d~~~~~~~~~~~~~v~~l~~ 418 (543)
T 1nir_A 348 ----VAVIDSKDRR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG---SISLIGTDPKNHPQYAWKKVAELQG 418 (543)
T ss_dssp ----EEEEETTTTE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS---EEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred ----EEEEECCCCe-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc---eEEEEEeCCCCCchhcCeEEEEEEc
Confidence 6777765432 22222221 255444444 4777 55555554 456 9999999763211 11346677664
Q ss_pred C--ceeEEEEccCCCEEEEEeccC----CCceEEEEECCCccee-ee----------cccCceeeeEECCCCCEEEEEEe
Q 005315 503 K--QANALFWSPSGRFIVLAGLKG----FNGQLEFYNVDELETM-AT----------AEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 503 ~--~v~~~~~spdg~~l~~~~~~~----~dg~v~i~d~~~~~~~-~~----------~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
+ .+..++++|+|++|++++..+ .+++|.+||+.+++.. .. .+...+..++|+|+|++|+++..
T Consensus 419 ~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 419 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEE
T ss_pred CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEee
Confidence 4 567899999999999987211 1679999999987765 22 22467889999999999998754
Q ss_pred ecccccccEEEEEeccc-eeeee
Q 005315 566 SVHEMENGFNIWSFNGK-LLYRT 587 (702)
Q Consensus 566 ~~~~~d~~v~iw~~~g~-~l~~~ 587 (702)
.....++.|.|||.... ++...
T Consensus 499 ~~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp CCTTSCCEEEEEETTTTEEEEEE
T ss_pred cCCCCCCeEEEEECCCceEEEee
Confidence 21112799999998744 44433
No 127
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=5.8e-23 Score=219.56 Aligned_cols=250 Identities=14% Similarity=0.262 Sum_probs=182.9
Q ss_pred cccCCCcccceEEECCC-CcEEEEEeCCc-eEEeecCcC----------cceeeee-cCC-CeeEEEecCCCC-EEEEEc
Q 005315 198 VYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGANT----------FNRLMRY-AHP-QVKLIDFSPGEK-YLVTYS 262 (702)
Q Consensus 198 ~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~----------~~~~~~~-~~~-~v~~i~fSpdg~-~l~t~s 262 (702)
....|...|++++|+|+ +.+||+++.+| |.||+.. . ...+..+ .|. .|.+++|+|+++ +|++++
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYT-KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGG-GSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECC-CcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 34578899999999997 78999999998 8999987 4 4444444 243 499999999998 999999
Q ss_pred CCCCCCCcCCCccEEEEEEccCCcE-------EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEE
Q 005315 263 SHEPSNPRDANRVVINIFDVRTGKV-------MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISV 334 (702)
Q Consensus 263 ~d~~~~~~~~~~~~i~vwd~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v 334 (702)
.+ +.|++|++.++.. ...+.+|...+. +++|+|.++.+|++++ ++.|++
T Consensus 202 ~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-------------~v~~~p~~~~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 202 DD----------HTICLWDINATPKEHRVIDAKNIFTGHTAVVE-------------DVAWHLLHESLFGSVADDQKLMI 258 (430)
T ss_dssp TT----------SCEEEEETTSCCBGGGEEECSEEECCCSSCEE-------------EEEECSSCTTEEEEEETTSEEEE
T ss_pred CC----------CeEEEEeCCCCCCCCceeccceeecCCCCCEe-------------eeEEeCCCCCEEEEEeCCCeEEE
Confidence 99 9999999987432 345556665553 7899993356777877 999999
Q ss_pred EecCCc---ccccceeeccCCeeEEEeCCCCCe-EEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccC
Q 005315 335 YETESF---TLIDKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 410 (702)
Q Consensus 335 ~d~~~~---~~~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 410 (702)
||+.++ ..+.....|...|.+++|+|++.. |++ ++.++.++ +|++.
T Consensus 259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~t-----g~~dg~v~--vwd~~----------------------- 308 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT-----GSADKTVA--LWDLR----------------------- 308 (430)
T ss_dssp EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEE-----EETTSEEE--EEETT-----------------------
T ss_pred EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEE-----EeCCCeEE--EEeCC-----------------------
Confidence 999976 344444456677889999998874 555 44454433 33322
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCc-EEEEEEcCCCCCeEEEEEeeccc
Q 005315 411 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQ 489 (702)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~ 489 (702)
....++ ..+..|...|.+++|+|+++ .|++++.|+ .|++|++....
T Consensus 309 ----------------------------~~~~~~--~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~---~i~iwd~~~~~ 355 (430)
T 2xyi_A 309 ----------------------------NLKLKL--HSFESHKDEIFQVQWSPHNETILASSGTDR---RLHVWDLSKIG 355 (430)
T ss_dssp ----------------------------CTTSCS--EEEECCSSCEEEEEECSSCTTEEEEEETTS---CCEEEEGGGTT
T ss_pred ----------------------------CCCCCe--EEeecCCCCEEEEEECCCCCCEEEEEeCCC---cEEEEeCCCCc
Confidence 111111 22346789999999999995 588888888 99999997622
Q ss_pred CcC--------ceEEEEEcCCC--ceeEEEEccCCC-EEEEEeccCCCceEEEEECCCc
Q 005315 490 HAG--------RVSKLTTLKGK--QANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDEL 537 (702)
Q Consensus 490 ~~~--------~~~~~~~~~~~--~v~~~~~spdg~-~l~~~~~~~~dg~v~i~d~~~~ 537 (702)
... ....+..+.+| .+++++|+|+++ +|++++. ||.|++|++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~---dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE---DNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET---TSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC---CCCEEEeEcccc
Confidence 100 01255555544 699999999999 7888887 999999999843
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=1.3e-22 Score=221.99 Aligned_cols=357 Identities=11% Similarity=0.068 Sum_probs=237.6
Q ss_pred ccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeec--CcCcceeeeec
Q 005315 166 LTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGG--ANTFNRLMRYA 242 (702)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~--~~~~~~~~~~~ 242 (702)
.++|.+ ..|+..+.++.+.+|+. ..++....+..+.. +.+++|||||++|++++.++ |.+||+ . +.+.+.++.
T Consensus 144 ~~~p~~-~~~vs~~~d~~V~v~D~-~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~-t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPN-LFSVTLRDAGQIALVDG-DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK-EPTKVAEIK 219 (543)
T ss_dssp CCCGGG-EEEEEEGGGTEEEEEET-TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSS-SCEEEEEEE
T ss_pred ccCCCC-EEEEEEcCCCeEEEEEC-CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCC-CCcEEEEEe
Confidence 456654 35666667778889998 56777777763333 78999999999999999888 889999 7 777777776
Q ss_pred CC-CeeEEEecC----CCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEE
Q 005315 243 HP-QVKLIDFSP----GEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 316 (702)
Q Consensus 243 ~~-~v~~i~fSp----dg~~l~t~s~-d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 316 (702)
+. .+.+++||| ||++|++++. + ++|.|||..++++++.+..+...+. ...-..+-.-..+.+
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~----------~~v~v~D~~t~~~~~~i~~~g~~~~--~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWP----------PQFAIMDGETLEPKQIVSTRGMTVD--TQTYHPEPRVAAIIA 287 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEES----------SEEEEEETTTCCEEEEEECCEECSS--SCCEESCCCEEEEEE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccC----------CeEEEEeccccccceeecccCcccC--ccccccCCceEEEEE
Confidence 54 489999999 9999999885 5 7899999999999988875421100 000000000016789
Q ss_pred cCCCCcEEE-Eec-CCeEEEEecCCcccccceee-ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 317 GGGKDKYFA-KLG-KNMISVYETESFTLIDKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 317 s~~dg~~la-~~~-d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
|| ++..++ +.. ++.|.+||..+.+.+....+ +...+.++.|+|+|+++++. ......|.+|+..+.+.+.
T Consensus 288 s~-~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va------~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 288 SH-EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTA------ANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp CS-SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEE------EGGGTEEEEEETTTTEEEE
T ss_pred CC-CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEE------ecCCCeEEEEECCCCeEEE
Confidence 99 877554 444 89999999987665432222 23347889999999987652 2233456678888877655
Q ss_pred eeeec----ccccceeEEccCCCEEEEEE--cccccccccccccEEEEEEecCCc----ceeEEEecCCCCceeEEEEee
Q 005315 394 QKNLF----SVSDCKMYWQSSGDYLAVKV--DRYTKTKKSTYTGFELFRIKERDI----PIEVLELDNKNDKIIAFAWEP 463 (702)
Q Consensus 394 ~~~~~----~~~~~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~l~~h~~~v~~~~~sp 463 (702)
..... ......+ ++|++..+++.. .+++ +.+|++...+. -.....+..|...+..++++|
T Consensus 361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~---------V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS---------ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE---------EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred eeccCCCCCCCCCccc-CCCCCccEEEeccCCCce---------EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence 44331 1112222 467754444433 2344 78888876221 122345666778888999999
Q ss_pred CCcEEEEEEcCCC----CCeEEEEEeecccCcCceEEEE-----EcCCCceeEEEEccCCCEEEEEecc--CCCceEEEE
Q 005315 464 KGHRFAVIHGDSP----RPDISFYSMRTAQHAGRVSKLT-----TLKGKQANALFWSPSGRFIVLAGLK--GFNGQLEFY 532 (702)
Q Consensus 464 ~g~~l~~~~~d~~----~~~v~i~d~~~~~~~~~~~~~~-----~~~~~~v~~~~~spdg~~l~~~~~~--~~dg~v~i~ 532 (702)
+|++|++.+.-++ ..+|.+||+.+.........+. .-.+..+.++.|+|+|+.|+++... +.++.|.||
T Consensus 431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~ 510 (543)
T 1nir_A 431 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 510 (543)
T ss_dssp TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEE
T ss_pred CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEE
Confidence 9999999873111 1289999998765310110010 0113468899999999999987431 237999999
Q ss_pred ECCCcceeeecccCceeeeEECCCCCE
Q 005315 533 NVDELETMATAEHFMATDVEWDPTGRY 559 (702)
Q Consensus 533 d~~~~~~~~~~~~~~i~~~~~spdg~~ 559 (702)
|..+++++.+.....+ .+|+|+|
T Consensus 511 D~~t~~~~~~i~~~~~----~~p~g~~ 533 (543)
T 1nir_A 511 DDKTLKLKAVVKDPRL----ITPTGKF 533 (543)
T ss_dssp ETTTTEEEEEECCTTC----CSEEEEE
T ss_pred ECCCceEEEeecCCCc----cCCCeee
Confidence 9999999877654333 3455554
No 129
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=4.8e-22 Score=226.83 Aligned_cols=333 Identities=11% Similarity=0.109 Sum_probs=213.1
Q ss_pred ccceEEECCCCcEEEEEeCCceEEeecCcCcce--eeeecC------------------CCeeEEEecCCCCEEEEEcCC
Q 005315 205 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNR--LMRYAH------------------PQVKLIDFSPGEKYLVTYSSH 264 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~--~~~~~~------------------~~v~~i~fSpdg~~l~t~s~d 264 (702)
.+..++|+ |..+++++.++| +||.. +++. ...+.+ ..|.+++|||| ++++.+. +
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~i-~~d~~-tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDDL-VFNKA-NGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTEE-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred cCCCCcCc--CCeEEEEeCCcE-EEECC-CCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 35678999 667777778889 99998 5554 222221 45999999999 6666553 4
Q ss_pred CCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCC-----
Q 005315 265 EPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETES----- 339 (702)
Q Consensus 265 ~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~----- 339 (702)
+.|++||+.+++....... ...+. .++||| ||++||++.++.|.+|++.+
T Consensus 101 ----------~~i~~~d~~~~~~~~l~~~-~~~~~-------------~~~~Sp-dG~~la~~~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 101 ----------GGLVGFDMLARKVTYLFDT-NEETA-------------SLDFSP-VGDRVAYVRNHNLYIARGGKLGEGM 155 (706)
T ss_dssp ----------TEEEEEETTTTEEEEEECC-TTCCT-------------TCEECT-TSSEEEEEETTEEEEEECBCTTSCC
T ss_pred ----------CEEEEEECCCCceEEccCC-ccccc-------------CCcCCC-CCCEEEEEECCeEEEEecCcccccC
Confidence 5899999988876554433 22221 579999 99999998899999999988
Q ss_pred cccccceeeccCC--------------eeEEEeCCCCCeEEEEeecC--------------------------CCCCCCc
Q 005315 340 FTLIDKKSLKVEN--------------VMDFSWSPTDPIISLFVPEL--------------------------GGGNQPA 379 (702)
Q Consensus 340 ~~~~~~~~~~~~~--------------v~~~~~sp~~~~la~~~~~~--------------------------~~~~~~~ 379 (702)
++........... +.++.|||||++|++..... +..+...
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 6544322222222 47899999999999853110 0123456
Q ss_pred EEEEEecCCcceeeeee--ecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC---
Q 005315 380 RVSLVQIPSKEELRQKN--LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--- 454 (702)
Q Consensus 380 ~i~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--- 454 (702)
.|++|++.+.+...... ........+.|+|+|++|++...+... ....+.+|++.... ....+....+..
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~v~~~d~~~g~-~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ----NECKVNAYDAETGR-FVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS----CEEEEEEEETTTCC-EEEEEEEEECSSCCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC----CeeEEEEEECCCCc-eeeEEEEccCCCeEC
Confidence 78999987765332221 122234567899999999987654320 01124555544321 222221112222
Q ss_pred ceeEEEEee--CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeE-EEEccCCCEEEEEeccCC--Cc
Q 005315 455 KIIAFAWEP--KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANA-LFWSPSGRFIVLAGLKGF--NG 527 (702)
Q Consensus 455 ~v~~~~~sp--~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~-~~~spdg~~l~~~~~~~~--dg 527 (702)
.+.+++|+| +|++++++..++ .++||.+..... .+..+..+ .+.. ++|+|+|+.|++++.... ..
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~-----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGR-----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSC-----EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred ccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCC-----EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 346789999 999888777777 788888762211 44555543 4555 899999999887765221 13
Q ss_pred eEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc
Q 005315 528 QLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 528 ~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
.|+.||+.+++.....+...+.+++|||||++|+++..+. ...+.+++|++.+.
T Consensus 383 ~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~-~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSP-TVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECS-SCSCEEEEEESSSC
T ss_pred EEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCC-CCCcEEEEEECCCC
Confidence 7777888776644444566788999999999998876620 01256999997654
No 130
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=1.2e-22 Score=210.92 Aligned_cols=277 Identities=9% Similarity=0.098 Sum_probs=181.7
Q ss_pred EeecCcCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCC
Q 005315 228 VWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 305 (702)
Q Consensus 228 iw~~~~~~~~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~ 305 (702)
||+.. +...+... +...|.+++|||||++|++++.+ + ++||++.+++.+.....+. ..
T Consensus 3 i~s~~-~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~----------~-~~iw~~~~~~~~~~~~~~~-~~------- 62 (355)
T 3vu4_A 3 LGSMI-TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLK----------S-FEIYNVHPVAHIMSQEMRH-LS------- 62 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSS----------E-EEEEEETTEEEEEEEECSC-CC-------
T ss_pred ccccc-ccCCccccccCCCceEEEEECCCCCEEEEEcCC----------E-EEEEecCCcceeeeeecCC-eE-------
Confidence 44544 44444433 34469999999999999999877 5 7899998887665543331 11
Q ss_pred CCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEE
Q 005315 306 VAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSL 383 (702)
Q Consensus 306 ~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~ 383 (702)
.+.|++ ++++++..+ ++.|++||..+++.+.... +...|.++.|+++...++ .++ .|.+
T Consensus 63 -------~~~~~~-~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--------~~~--~i~i 123 (355)
T 3vu4_A 63 -------KVRMLH-RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--------YGD--VISV 123 (355)
T ss_dssp -------EEEECT-TSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--------ETT--EEEE
T ss_pred -------EEEEcC-CCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--------EcC--EEEE
Confidence 578888 888876544 7899999999888776553 445688999988643322 222 3445
Q ss_pred EecCCc-ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEe
Q 005315 384 VQIPSK-EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 462 (702)
Q Consensus 384 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 462 (702)
|++... +.+.... .+...++++
T Consensus 124 ~d~~~~~~~~~~~~---------------------------------------------------------~~~~~~~~s 146 (355)
T 3vu4_A 124 FKFGNPWKRITDDI---------------------------------------------------------RFGGVCEFS 146 (355)
T ss_dssp EESSTTCCBSSCCE---------------------------------------------------------EEEEEEEEE
T ss_pred EECCCCceeeEEec---------------------------------------------------------cCCceEEEE
Confidence 554332 1111000 011223445
Q ss_pred eCCcEEEEE--EcCCCCCeEEEEEeecccCc---------CceEE-EEEcCCC--ceeEEEEccCCCEEEEEeccCCCce
Q 005315 463 PKGHRFAVI--HGDSPRPDISFYSMRTAQHA---------GRVSK-LTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQ 528 (702)
Q Consensus 463 p~g~~l~~~--~~d~~~~~v~i~d~~~~~~~---------~~~~~-~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~ 528 (702)
| .+++++ +.++ .|++||+.++... ....+ +..+.+| .|++++|+|+|++|++++. ||+
T Consensus 147 ~--~~la~~sg~~~g---~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~---d~~ 218 (355)
T 3vu4_A 147 N--GLLVYSNEFNLG---QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ---DGT 218 (355)
T ss_dssp T--TEEEEEESSCTT---CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET---TCS
T ss_pred c--cEEEEeCCCcCc---EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC---CCC
Confidence 5 567765 4466 8999999754300 00011 4445544 7999999999999999998 998
Q ss_pred -EEEEECCCcceeeec----ccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee----------------
Q 005315 529 -LEFYNVDELETMATA----EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---------------- 587 (702)
Q Consensus 529 -v~i~d~~~~~~~~~~----~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~---------------- 587 (702)
|++||+.+++.+... |...|++++|+|+|++|++++. |+.++||++........
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD-----KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET-----TCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC-----CCEEEEEEccCCCCcccccccceeecccccccc
Confidence 999999988877652 6688999999999999999999 99999999863211100
Q ss_pred ----------ccccEeeEEEeeCCCCCCChhhHHHH
Q 005315 588 ----------LKDHFFQFLWRPRPPSFLTPEKEEEI 613 (702)
Q Consensus 588 ----------~~~~i~~~~w~p~~~~l~s~~~d~~i 613 (702)
.......++|+|+++.|++++.++.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 01123668999999999988877654
No 131
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=3.7e-22 Score=206.11 Aligned_cols=296 Identities=12% Similarity=0.153 Sum_probs=187.1
Q ss_pred cccccccCCCCCceEEEEeCCceEEEecCCCCC---CCcccccCCCcccceEEECC--CCcEEEEEeCCc-eEEeecCcC
Q 005315 161 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHL---KPEPVYKRSYWTESFVQWSP--LGTYLATVHRQG-AAVWGGANT 234 (702)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~v~~v~~Sp--dg~~lat~~~~~-i~iw~~~~~ 234 (702)
.+.+..++|+++ .++..+.++.+.+|+..... .....+.+|...|++++|+| +|++|++++.++ |++|+.. .
T Consensus 13 ~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~-~ 90 (351)
T 3f3f_A 13 LVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED-P 90 (351)
T ss_dssp CEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC-T
T ss_pred ceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC-C
Confidence 355666677665 55667778888899984322 24455688999999999999 699999999999 8899998 4
Q ss_pred c---------ceeeee-cC-CCeeEEEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccC
Q 005315 235 F---------NRLMRY-AH-PQVKLIDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVG 301 (702)
Q Consensus 235 ~---------~~~~~~-~~-~~v~~i~fSpd--g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~ 301 (702)
. ..+..+ .| ..|.+++|+|+ +++|++++.+ +.|++||+.+++.+..+..........
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND----------GILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT----------CEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC----------CcEEEecCCChHHhccccccccccccc
Confidence 4 334444 23 35999999999 9999999999 999999999887665543211000000
Q ss_pred C--CCCCCCcccceEEEcCCC---CcEEEEec-CCeEEEEecCCccc--ccceeeccCCeeEEEeCCCC----CeEEEEe
Q 005315 302 G--TGGVAGVSWPVFRWGGGK---DKYFAKLG-KNMISVYETESFTL--IDKKSLKVENVMDFSWSPTD----PIISLFV 369 (702)
Q Consensus 302 ~--~~~~~~~~w~~~~~s~~d---g~~la~~~-d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~sp~~----~~la~~~ 369 (702)
. ...... ..++.|+| + +.++++++ ++.+.+|+...+.. +.....|...|.+++|+|++ ++|++
T Consensus 161 ~~~~~~~~~--~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s-- 235 (351)
T 3f3f_A 161 IPPANHLQS--DFCLSWCP-SRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT-- 235 (351)
T ss_dssp CCCSSCSCC--CEEEEECC-CSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE--
T ss_pred cccCCcccc--eeEEEecc-CCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE--
Confidence 0 000011 12789999 7 88999888 88887777766554 33344567789999999998 78888
Q ss_pred ecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005315 370 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 449 (702)
Q Consensus 370 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 449 (702)
++.++.+++|.+............. .......+++....+..+..... ......+...........+
T Consensus 236 ---~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 236 ---GCKDGRIRIFKITEKLSPLASEESL--TNSNMFDNSADVDMDAQGRSDSN--------TEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp ---EETTSCEEEEEEEECC-------------------------------------------------CCSEEEEEEEEE
T ss_pred ---EcCCCeEEEEeCCCCcCccccCCcc--cceeccCCCcccccccccccccc--------cceeeeecccccccEEEEE
Confidence 7788888887776543221111110 01111112223222222221111 0111111111111223446
Q ss_pred cCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeeccc
Q 005315 450 DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 489 (702)
Q Consensus 450 ~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 489 (702)
.+|...|.+++|+|++++|++++.|+ .|++|++.++.
T Consensus 303 ~~h~~~v~~~~~s~~~~~l~s~~~dg---~v~iw~~~~~~ 339 (351)
T 3f3f_A 303 DDHNGEVWSVSWNLTGTILSSAGDDG---KVRLWKATYSN 339 (351)
T ss_dssp CTTSSCEEEEEECSSSCCEEEEETTS---CEEEEEECTTS
T ss_pred ecccccEEEEEEcCCCCEEEEecCCC---cEEEEecCcCc
Confidence 68999999999999999999999999 99999997643
No 132
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=3.1e-22 Score=198.62 Aligned_cols=276 Identities=9% Similarity=0.048 Sum_probs=177.9
Q ss_pred cCCCCCceEEEEeCCceEEEecCCCCC---CCcccccCCCcccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecC
Q 005315 167 TDEKARDQFVIRSGTDTEVLWNDARHL---KPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAH 243 (702)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~ 243 (702)
.-+.++...++..++.++.+|+. ... +....++.|..+|..++|+||-.-|++..- ..++.
T Consensus 48 ~~~~~~~~~~~~~~~~~v~lw~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------~~~~~ 111 (356)
T 2w18_A 48 ERAGCKEPCIITACEDVVSLWKA-LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL---------------GNLEI 111 (356)
T ss_dssp C----CEEEEEEEESSEEEEEEE-SSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE---------------CSSSE
T ss_pred ccCCCCccEEEEeccceEEEccc-CCCccceeeEEEeccCceeEEEEEcCcccceeeeee---------------ccccc
Confidence 34567788899999999999998 345 566778899999999999998754443311 11233
Q ss_pred CCeeEEEecCC----CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEee-ccCCCcccccCCCCCCCCcccceEEEcC
Q 005315 244 PQVKLIDFSPG----EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGG 318 (702)
Q Consensus 244 ~~v~~i~fSpd----g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~s~ 318 (702)
..|+.++|||| ++++++++.+ +.||++.+|+.+.+ ..+|
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~------------~~v~~l~~g~lv~ss~~g~------------------------ 155 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNI------------KAVLGLTKRRLVSSSGTLS------------------------ 155 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEE------------EEEEEETTTEEEEEESSST------------------------
T ss_pred cceEEEEECCCccccccEEEeCCCe------------EEEEecCCCcEEEecccCC------------------------
Confidence 45889999999 9999997744 77887654444433 2223
Q ss_pred CCCcEEEEecCCeEEEEec-CCcccccceeeccCCeeEEEeCC---CCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 319 GKDKYFAKLGKNMISVYET-ESFTLIDKKSLKVENVMDFSWSP---TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 319 ~dg~~la~~~d~~i~v~d~-~~~~~~~~~~~~~~~v~~~~~sp---~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
++.|++|++ ++++.+.....|...+..++|+| ++..|++ ++.|++++|| ++.+++.+..
T Consensus 156 ----------d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaS-----gS~D~TIkIW--Dl~TGk~l~t 218 (356)
T 2w18_A 156 ----------DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLG-----TTIMNNIVIW--NLKTGQLLKK 218 (356)
T ss_dssp ----------TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEE-----EETTSEEEEE--ETTTCCEEEE
T ss_pred ----------CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEE-----ecCCCcEEEE--ECCCCcEEEE
Confidence 555666665 33555555557777788888888 6788888 6777776654 4444433322
Q ss_pred eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEE------
Q 005315 395 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF------ 468 (702)
Q Consensus 395 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l------ 468 (702)
...+. .+...+.+++|+|+|.++
T Consensus 219 L~g~~---------------------------------------------------~~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 219 MHIDD---------------------------------------------------SYQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp EECCC------------------------------------------------------CCCEEEEEEETTEEEEEEC--
T ss_pred EcCCC---------------------------------------------------cceeeeEEEEECCCCCEEEEeccC
Confidence 21100 001234444555555554
Q ss_pred ------EEEEcCCCCCeEEEEEeecccCcCceEEEEEc----C-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCc
Q 005315 469 ------AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL----K-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 537 (702)
Q Consensus 469 ------~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~----~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~ 537 (702)
++++.|+ +|++|+..++. .+..+ + ++....+..+.+|.++++++. |++|+|||+.++
T Consensus 248 ~~~w~laSGs~D~---tIklWd~~tgk------~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~---DgTIkIWDl~tG 315 (356)
T 2w18_A 248 CAKESESLRSPVF---QLIVINPKTTL------SVGVMLYCLPPGQAGRFLEGDVKDHCAAAILT---SGTIAIWDLLLG 315 (356)
T ss_dssp ----------CCE---EEEEEETTTTE------EEEEEEECCCTTCCCCEEEEEEETTEEEEEET---TSCEEEEETTTC
T ss_pred CCcceeeccCCCc---EEEEEECCCCE------EEEEEEeeccCCCcceeEccccCCCEEEEEcC---CCcEEEEECCCC
Confidence 4555667 89999986554 22222 2 333233344445788999888 999999999999
Q ss_pred ceeeec--ccCcee-eeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 538 ETMATA--EHFMAT-DVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 538 ~~~~~~--~~~~i~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
+++.+. |...+. .++|||||++|++|+. |++|+||++
T Consensus 316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~-----D~TIklWd~ 355 (356)
T 2w18_A 316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQK-----DGNIFVYHY 355 (356)
T ss_dssp SEEEEECCC--CCCCEEEECSSSSEEEEECT-----TSCEEEEEE
T ss_pred cEEEEecCCCCCeEEEEEECCCCCEEEEEEC-----CCcEEEecC
Confidence 988773 444444 5899999999999999 999999996
No 133
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=6.1e-22 Score=212.03 Aligned_cols=277 Identities=15% Similarity=0.199 Sum_probs=195.6
Q ss_pred ceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec-CC-CeeEE
Q 005315 173 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLI 249 (702)
Q Consensus 173 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i 249 (702)
..+++.+.++.+.+|+. ..++....+.+|...|++++| +|++|++++.+| |++|+.. +++.+..+. |. .|.++
T Consensus 144 ~~l~~g~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 144 QKIVSGLRDNTIKIWDK-NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN-TGEMLNTLIHHCEAVLHL 219 (435)
T ss_dssp SEEEEEESSSCEEEEES-SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS-SCCEEEEECCCCSCEEEE
T ss_pred CEEEEEeCCCeEEEEeC-CCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC-CCcEEEEEcCCCCcEEEE
Confidence 35667778888999998 577788889999999999999 789999999999 8899999 777777763 33 49999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEE---eeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEE
Q 005315 250 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM---RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 326 (702)
Q Consensus 250 ~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~ 326 (702)
+|++ .+|++++.+ +.|++||+.++..+ ..+.+|...+. ++.| ++++|++
T Consensus 220 ~~~~--~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~v~-------------~~~~---~~~~l~s 271 (435)
T 1p22_A 220 RFNN--GMMVTCSKD----------RSIAVWDMASPTDITLRRVLVGHRAAVN-------------VVDF---DDKYIVS 271 (435)
T ss_dssp ECCT--TEEEEEETT----------SCEEEEECSSSSCCEEEEEECCCSSCEE-------------EEEE---ETTEEEE
T ss_pred EEcC--CEEEEeeCC----------CcEEEEeCCCCCCceeeeEecCCCCcEE-------------EEEe---CCCEEEE
Confidence 9974 599999999 99999999888765 56667766542 4555 6688888
Q ss_pred ec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccccccee
Q 005315 327 LG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKM 405 (702)
Q Consensus 327 ~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 405 (702)
++ |+.|++||+.+++.+.....|...|.++.|+ +.++++ ++.++.+++| ++.+.+
T Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~-----g~~dg~i~iw--d~~~~~--------------- 327 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS-----GSSDNTIRLW--DIECGA--------------- 327 (435)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEE-----EETTSCEEEE--ETTTCC---------------
T ss_pred EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEE-----EeCCCeEEEE--ECCCCC---------------
Confidence 88 9999999999988777666677778777773 566666 5555554443 222111
Q ss_pred EEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEe
Q 005315 406 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 485 (702)
Q Consensus 406 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 485 (702)
....+.+|...|.+++| ++.+|++++.|+ .|++||+
T Consensus 328 ---------------------------------------~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg---~i~vwd~ 363 (435)
T 1p22_A 328 ---------------------------------------CLRVLEGHEELVRCIRF--DNKRIVSGAYDG---KIKVWDL 363 (435)
T ss_dssp ---------------------------------------EEEEECCCSSCEEEEEC--CSSEEEEEETTS---CEEEEEH
T ss_pred ---------------------------------------EEEEEeCCcCcEEEEEe--cCCEEEEEeCCC---cEEEEEC
Confidence 11234467889999998 789999999999 9999999
Q ss_pred ecccCcC---ceEEEEEcCCC--ceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-cccCceeeeEEC
Q 005315 486 RTAQHAG---RVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWD 554 (702)
Q Consensus 486 ~~~~~~~---~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-~~~~~i~~~~~s 554 (702)
.++.... ....+..+.+| .|.+++| +|++|++++. ||.|++||+.+...... ....+...+.|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 364 VAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH---DDTILIWDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp HHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS---SSEEEEEC----------------------
T ss_pred CCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC---CCEEEEEECCCCCCcccCCCCCCccceeee
Confidence 7654211 01134444444 6888998 7889999988 99999999986554433 222334444443
No 134
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=3.1e-21 Score=220.15 Aligned_cols=326 Identities=11% Similarity=0.104 Sum_probs=209.5
Q ss_pred eEEEEeCCceEEEecCCCCCCC--cccccCC----------------CcccceEEECCCCcEEEEEeCCceEEeecCcCc
Q 005315 174 QFVIRSGTDTEVLWNDARHLKP--EPVYKRS----------------YWTESFVQWSPLGTYLATVHRQGAAVWGGANTF 235 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~----------------~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~ 235 (702)
.|+...+++ + +|+. .+++. ...+..+ ...+.+++|||| ++++++....+.+||.. ++
T Consensus 37 ~~~~~~~~~-i-~~d~-~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~~~i~~~d~~-~~ 111 (706)
T 2z3z_A 37 NYVFIEGDD-L-VFNK-ANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQGGLVGFDML-AR 111 (706)
T ss_dssp EEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEETTEEEEEETT-TT
T ss_pred eEEEEeCCc-E-EEEC-CCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEECCEEEEEECC-CC
Confidence 566666666 5 9998 45555 2222221 146899999999 66666666559999998 66
Q ss_pred ceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-----CcEEeeccCCCcccccCCC---CCC
Q 005315 236 NRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-----GKVMRDFKGSADEFAVGGT---GGV 306 (702)
Q Consensus 236 ~~~~~~~~-~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~-----g~~~~~~~~~~~~~~~~~~---~~~ 306 (702)
+......+ ..+.+++|||||++|+++ .+ +.|++|++.+ ++..+....+...+..+.. ...
T Consensus 112 ~~~~l~~~~~~~~~~~~SpdG~~la~~-~~----------~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~ 180 (706)
T 2z3z_A 112 KVTYLFDTNEETASLDFSPVGDRVAYV-RN----------HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF 180 (706)
T ss_dssp EEEEEECCTTCCTTCEECTTSSEEEEE-ET----------TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT
T ss_pred ceEEccCCcccccCCcCCCCCCEEEEE-EC----------CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc
Confidence 55444444 358999999999999996 45 6899999988 8766655444331100000 000
Q ss_pred CCcccceEEEcCCCCcEEEEec----------------------------------CCeEEEEecCCccccccee--ecc
Q 005315 307 AGVSWPVFRWGGGKDKYFAKLG----------------------------------KNMISVYETESFTLIDKKS--LKV 350 (702)
Q Consensus 307 ~~~~w~~~~~s~~dg~~la~~~----------------------------------d~~i~v~d~~~~~~~~~~~--~~~ 350 (702)
.. ...+.||| ||++|++++ +..|.+||+.++....... .+.
T Consensus 181 ~~--~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 257 (706)
T 2z3z_A 181 GI--EKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE 257 (706)
T ss_dssp TC--CCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred CC--CceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence 00 01689999 999999875 3579999998876432221 233
Q ss_pred CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeee-eccc----ccceeEEcc--CCCEEEEEEccccc
Q 005315 351 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN-LFSV----SDCKMYWQS--SGDYLAVKVDRYTK 423 (702)
Q Consensus 351 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~----~~~~~~~s~--~g~~l~~~~~~~~~ 423 (702)
..+..++|+|+|+.|++..... ......|++|+..+.+...... .... ....+.|+| +|++++++..++.
T Consensus 258 ~~~~~~~~spdg~~l~~~~~~~--~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~- 334 (706)
T 2z3z_A 258 KFLTNLSWSPDENILYVAEVNR--AQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW- 334 (706)
T ss_dssp CEEEEEEECTTSSEEEEEEECT--TSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS-
T ss_pred eeEeeEEEECCCCEEEEEEeCC--CCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc-
Confidence 4588999999999998743332 3445688999988763222111 1111 123468999 9998877655543
Q ss_pred ccccccccEEEEEEecCCcceeEEEecCCCCceeE-EEEeeCCcEEEEEEcCCCC--CeEEEEEeecccCcCceEEEEEc
Q 005315 424 TKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA-FAWEPKGHRFAVIHGDSPR--PDISFYSMRTAQHAGRVSKLTTL 500 (702)
Q Consensus 424 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~-~~~sp~g~~l~~~~~d~~~--~~v~i~d~~~~~~~~~~~~~~~~ 500 (702)
..||.++..+... ..+..|...+.+ ++|+|+|+.|++++.+... ..|..|++.++. +..+
T Consensus 335 --------~~l~~~~~~~~~~--~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-------~~~l 397 (706)
T 2z3z_A 335 --------NHLYLYDTTGRLI--RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-------TKDL 397 (706)
T ss_dssp --------CEEEEEETTSCEE--EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-------CEES
T ss_pred --------cEEEEEECCCCEE--EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-------ceec
Confidence 6788887443322 345566777877 7999999999888775421 244445543322 1222
Q ss_pred -CCCceeEEEEccCCCEEEEEeccC-CCceEEEEECCCcc
Q 005315 501 -KGKQANALFWSPSGRFIVLAGLKG-FNGQLEFYNVDELE 538 (702)
Q Consensus 501 -~~~~v~~~~~spdg~~l~~~~~~~-~dg~v~i~d~~~~~ 538 (702)
....+.+++|||+|++++++..+. ..+.|++||+.+++
T Consensus 398 ~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 398 TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 244688999999999998875421 23679999998776
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=2.7e-20 Score=191.32 Aligned_cols=288 Identities=11% Similarity=0.106 Sum_probs=196.2
Q ss_pred EEecCCCCE-EEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe
Q 005315 249 IDFSPGEKY-LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 327 (702)
Q Consensus 249 i~fSpdg~~-l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~ 327 (702)
..|++++++ +++.+.+ +.|.+||+.+++.+..+..+.... .++|+| +|++++.+
T Consensus 3 ~~~~~~~~~~~v~~~~~----------~~v~~~d~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~l~~~ 57 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHL----------RRISFFSTDTLEILNQITLGYDFV--------------DTAITS-DCSNVVVT 57 (331)
T ss_dssp ----CCCCEEEEEEGGG----------TEEEEEETTTCCEEEEEECCCCEE--------------EEEECS-SSCEEEEE
T ss_pred eeEcCCCCEEEEEecCC----------CeEEEEeCcccceeeeEEccCCcc--------------eEEEcC-CCCEEEEE
Confidence 456676665 5666667 899999999999988877554332 689999 99966655
Q ss_pred c--CCeEEEEecCCccc-ccceeeccCCeeEEEeCCCCCeEEEEeecCCCCC-CCcEEEEEecCCcceeeeeeecccccc
Q 005315 328 G--KNMISVYETESFTL-IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN-QPARVSLVQIPSKEELRQKNLFSVSDC 403 (702)
Q Consensus 328 ~--d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~ 403 (702)
+ ++.|.+||+.+++. ......+.....+++|+|+|++|++ +..+ +...|++|+..+.+.+..... .....
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~ 131 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVT-----VTGLNHPFNMQSYSFLKNKFISTIPI-PYDAV 131 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEE-----CCCSSSSCEEEEEETTTTEEEEEEEC-CTTEE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEE-----ecCCCCcccEEEEECCCCCeEEEEEC-CCCcc
Confidence 5 78999999998876 4333333333334999999999885 3333 334788899887776554432 22345
Q ss_pred eeEEccCCCEEEEEEccccccccccccc-EEEEEEecCCcceeE-EEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeE
Q 005315 404 KMYWQSSGDYLAVKVDRYTKTKKSTYTG-FELFRIKERDIPIEV-LELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDI 480 (702)
Q Consensus 404 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v 480 (702)
.+.|+|+|+++++..... .. +.+|++...+..... .....+...+..++|+|+|++++++.. ++ .|
T Consensus 132 ~~~~spdg~~l~~~~~~~--------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~---~v 200 (331)
T 3u4y_A 132 GIAISPNGNGLILIDRSS--------ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN---SI 200 (331)
T ss_dssp EEEECTTSSCEEEEEETT--------TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT---EE
T ss_pred ceEECCCCCEEEEEecCC--------CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC---eE
Confidence 678999999877765432 13 678888754432211 111133556889999999998877765 45 89
Q ss_pred EEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce--eeecc------c---Cce
Q 005315 481 SFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET--MATAE------H---FMA 548 (702)
Q Consensus 481 ~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~--~~~~~------~---~~i 548 (702)
.+||+.++.. ...+..+. +..+..++|+|+|++|++++. .++.|.+||+.+++. +.... . ...
T Consensus 201 ~v~d~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 201 GILETQNPEN---ITLLNAVGTNNLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA 275 (331)
T ss_dssp EEEECSSTTS---CEEEEEEECSSCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC
T ss_pred EEEECCCCcc---cceeeeccCCCCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCceeeecccccccccCCCCcccc
Confidence 9999976542 11244444 346788999999998877653 167899999998776 22111 1 123
Q ss_pred eeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee
Q 005315 549 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT 587 (702)
Q Consensus 549 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~ 587 (702)
..++|+|||++|++++.. ++.+.+|++.+..+...
T Consensus 276 ~~~~~spdg~~l~v~~~~----~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 276 NQMALNKTETKLFISANI----SRELKVFTISGKVVGYV 310 (331)
T ss_dssp CCEEECTTSSEEEEEETT----TTEEEEEETTSCEEEEC
T ss_pred cceEECCCCCEEEEecCC----CCcEEEEEecCCcccce
Confidence 458999999999887763 67999999987665433
No 136
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.5e-21 Score=199.07 Aligned_cols=255 Identities=10% Similarity=0.062 Sum_probs=186.1
Q ss_pred eEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCc--------Ccceeeee--c
Q 005315 174 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN--------TFNRLMRY--A 242 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~--------~~~~~~~~--~ 242 (702)
.++..+.++.+.+|+. ..++....+. ...|.++.|+|+ +++++.|+ +++|+..+ +...+..+ .
T Consensus 50 ~l~sg~~Dg~v~iwd~-~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQL-KDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEEETTEEEEEEE-SSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCcEEEEEC-CCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 4566667888899998 4566655555 467889999998 99999998 78997651 22223232 2
Q ss_pred CC-CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCc-ccccCCCCCCCCcccceEEEcC
Q 005315 243 HP-QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGG 318 (702)
Q Consensus 243 ~~-~v~~i~fSp--dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~s~ 318 (702)
|. .|.+++|+| ++++|++++.| ++|++||+.+++.+..+..+.. .+. +++|+|
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~~wd~~~~~~~~~~~~~~~~~i~-------------~~~~~p 180 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNR----------GTIGFQSYEDDSQYIVHSAKSDVEYS-------------SGVLHK 180 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETT----------CCEEEEESSSSCEEEEECCCSSCCCC-------------EEEECT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCC----------CcEEEEECCCCcEEEEEecCCCCceE-------------EEEECC
Confidence 33 499999999 99999999999 9999999999998776654433 221 789999
Q ss_pred CCCcEEEEec-CCeEEEEecCCcccc-cceee-ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee
Q 005315 319 GKDKYFAKLG-KNMISVYETESFTLI-DKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 395 (702)
Q Consensus 319 ~dg~~la~~~-d~~i~v~d~~~~~~~-~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 395 (702)
++.+||+++ |+.|++||+.+++.+ ..... |...|.+++|+|++.+|++ ++ ++ .|.+|++...+.+...
T Consensus 181 -dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s-----~~-~~--~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 181 -DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV-----EC-DQ--TVVCFDLRKDVGTLAY 251 (343)
T ss_dssp -TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE-----EE-SS--BEEEEETTSSTTCBSS
T ss_pred -CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE-----Ee-CC--eEEEEEcCCCCcceee
Confidence 999999988 999999999998876 45555 7788999999999999998 55 33 5667777665543322
Q ss_pred ee-----cccccceeEEccCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee---CCc
Q 005315 396 NL-----FSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP---KGH 466 (702)
Q Consensus 396 ~~-----~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp---~g~ 466 (702)
.. .......+.|+|+|++|++++. ++. +.+|++......... .++..++|+| +++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~---------i~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 315 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS---------LTIYKFDKKTKNWTK-------DEESALCLQSDTADFT 315 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTE---------EEEEEECTTTCSEEE-------EEEEECCC----CCCC
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCc---------EEEEEEcccccceEe-------cCceeEecCccccccc
Confidence 21 1112134899999999999887 655 789988654332211 4566788888 888
Q ss_pred EEEEEEcCCCCCeEEEEEe
Q 005315 467 RFAVIHGDSPRPDISFYSM 485 (702)
Q Consensus 467 ~l~~~~~d~~~~~v~i~d~ 485 (702)
.+++++.++ .+.++-.
T Consensus 316 ~l~~~~~d~---~~~~~~~ 331 (343)
T 3lrv_A 316 DMDVVCGDG---GIAAILK 331 (343)
T ss_dssp EEEEEEETT---EEEEEEE
T ss_pred eeEEEecCC---ceEEEEe
Confidence 899888888 6766543
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=7e-21 Score=217.85 Aligned_cols=342 Identities=10% Similarity=0.058 Sum_probs=210.1
Q ss_pred CCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCc---ccceEEECCCCcEEEEEeCC---------c-eEEeecCcC
Q 005315 168 DEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYW---TESFVQWSPLGTYLATVHRQ---------G-AAVWGGANT 234 (702)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~v~~v~~Spdg~~lat~~~~---------~-i~iw~~~~~ 234 (702)
.|+|+ ++....++...+|+. .+++....+.+|.. .+.+++|||||++||+++.+ + +.+||+. +
T Consensus 25 spdg~--~~~~~~dg~i~~~d~-~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~-~ 100 (723)
T 1xfd_A 25 ISDTE--FIYREQKGTVRLWNV-ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP-H 100 (723)
T ss_dssp SSSSC--BCCCCSSSCEEEBCG-GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS-S
T ss_pred cCCCc--EEEEeCCCCEEEEEC-CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC-C
Confidence 45565 344456778889998 45666666666654 48999999999999999863 3 7799998 5
Q ss_pred ccee--eee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCccccc-CCCC-----
Q 005315 235 FNRL--MRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV-GGTG----- 304 (702)
Q Consensus 235 ~~~~--~~~-~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~-~~~~----- 304 (702)
++.. ... .+. .+.+++|||||++||+++.. .|++||+.+++..+....+...+.. +...
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~-----------~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN-----------NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT-----------EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred CceEeccCCccccccccccEECCCCCEEEEEECC-----------eEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 5431 111 122 28899999999999998864 7999999988877665543321100 0000
Q ss_pred CCCCcccceEEEcCCCCcEEEEec-CC----------------------------------eEEEEecCCcccccceeec
Q 005315 305 GVAGVSWPVFRWGGGKDKYFAKLG-KN----------------------------------MISVYETESFTLIDKKSLK 349 (702)
Q Consensus 305 ~~~~~~w~~~~~s~~dg~~la~~~-d~----------------------------------~i~v~d~~~~~~~~~~~~~ 349 (702)
...+ ....+.||| ||++|++++ ++ .|.+||+.+++.......+
T Consensus 170 e~~~-~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 170 EILK-THIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp TTSS-SSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred Eecc-CcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 0000 001689999 999999887 32 7899999877643222221
Q ss_pred ------cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecc---cc--cceeEEccCCCEEEEE-
Q 005315 350 ------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS---VS--DCKMYWQSSGDYLAVK- 417 (702)
Q Consensus 350 ------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~--~~~~~~s~~g~~l~~~- 417 (702)
...+..++|||||++|+++... ......|++|+..+.+......... .. ...+.|+|+|+.|++.
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 324 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNR---AQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR 324 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEET---TSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcC---CCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEE
Confidence 3358899999999988764321 2345678899987766433222111 11 1256899999988876
Q ss_pred EcccccccccccccEEEEEEe-cCCcc-eeEEEecCCCCceeE-EEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCce
Q 005315 418 VDRYTKTKKSTYTGFELFRIK-ERDIP-IEVLELDNKNDKIIA-FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 494 (702)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~l~-~~~~~-~~~~~l~~h~~~v~~-~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 494 (702)
...... ......||.++ ..+.. .....+..+...+.. ++|+|+|++|++.+.+.....+.+|++......
T Consensus 325 ~~~~~~----~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~--- 397 (723)
T 1xfd_A 325 AIPQGG----RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF--- 397 (723)
T ss_dssp EECCSS----SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC---
T ss_pred ecccCC----CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC---
Confidence 322110 00124566665 22221 001233333344554 699999999988877531127899998643221
Q ss_pred EEEEEcC-----CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCc
Q 005315 495 SKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 537 (702)
Q Consensus 495 ~~~~~~~-----~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~ 537 (702)
....+. ...+..++|||+|++|++...+...-...+++..++
T Consensus 398 -~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~ 444 (723)
T 1xfd_A 398 -NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK 444 (723)
T ss_dssp -CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred -CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCC
Confidence 111222 335788999999999988754321112334455433
No 138
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.88 E-value=6.3e-22 Score=208.71 Aligned_cols=254 Identities=11% Similarity=0.037 Sum_probs=152.1
Q ss_pred eEEEEeCCceEEEecCCCCC----CCcccccCCCcccceEEECC--------CCcEEEEEeCCc-eEEeecCcCcceeee
Q 005315 174 QFVIRSGTDTEVLWNDARHL----KPEPVYKRSYWTESFVQWSP--------LGTYLATVHRQG-AAVWGGANTFNRLMR 240 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~----~~~~~~~~~~~~v~~v~~Sp--------dg~~lat~~~~~-i~iw~~~~~~~~~~~ 240 (702)
.++..+.|+++.+|+..... .+...+.+|...|++|+|+| ||++||+++.|+ |+|||+.........
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence 45666678899999973221 12345789999999999998 899999999999 889999833333344
Q ss_pred ec-CCCeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccc-------------cCCCCC
Q 005315 241 YA-HPQVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA-------------VGGTGG 305 (702)
Q Consensus 241 ~~-~~~v~~i~fSpdg~-~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~-------------~~~~~~ 305 (702)
+. +..|.+++|+|++. +|++++.| ++|++||+.+++.......+..... .....+
T Consensus 183 ~~~~~~v~~v~~~p~~~~~l~~~~~d----------~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 183 YPLSSPGISVQFRPSNPNQLIVGERN----------GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp EECSSCEEEEEEETTEEEEEEEEETT----------SEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred cCCCCCcEEEEECCCCCceEEecCCC----------CEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 44 44699999999985 79999999 9999999998876554432211100 000000
Q ss_pred CCCcccceEEEc-CCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEE
Q 005315 306 VAGVSWPVFRWG-GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSL 383 (702)
Q Consensus 306 ~~~~~w~~~~~s-~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~ 383 (702)
.... ..++.|+ + |++.|++++ |+++++|++..+........+...+..+.++|+...+.
T Consensus 253 ~~~~-v~~v~~~~~-dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------------- 313 (393)
T 4gq1_A 253 IASS-LANVRWIGS-DGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS----------------- 313 (393)
T ss_dssp CSSS-CSEEEEETT-TTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC-----------------
T ss_pred cccc-ceeeeeecC-CCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc-----------------
Confidence 1111 1156765 7 999999999 99999999886654433322222222333332211111
Q ss_pred EecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee
Q 005315 384 VQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 463 (702)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 463 (702)
.+...+ ...|+|
T Consensus 314 -------------------------------------------------------------------~~~~~~-~~~~~~ 325 (393)
T 4gq1_A 314 -------------------------------------------------------------------LFPSLL-GACPHP 325 (393)
T ss_dssp -------------------------------------------------------------------SSCCSS-CCEECS
T ss_pred -------------------------------------------------------------------ccCcce-eEEEcc
Confidence 001111 222333
Q ss_pred --CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECC
Q 005315 464 --KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 535 (702)
Q Consensus 464 --~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~ 535 (702)
++.++++++.|+ .|++||+.++... ....-...+|.+++|||||++||+++ ++.+.+|.+.
T Consensus 326 ~~~~~~~~sgs~Dg---~V~lwd~~~~~~~----~~~~~~~~~V~svafspdG~~LA~as----~~Gv~lvrL~ 388 (393)
T 4gq1_A 326 RYMDYFATAHSQHG---LIQLINTYEKDSN----SIPIQLGMPIVDFCWHQDGSHLAIAT----EGSVLLTRLM 388 (393)
T ss_dssp SCTTEEEEEETTTT---EEEEEETTCTTCC----EEEEECSSCEEEEEECTTSSEEEEEE----SSEEEEEEEG
T ss_pred CCCCEEEEEECCCC---EEEEEECCCCcEE----EEecCCCCcEEEEEEcCCCCEEEEEe----CCCeEEEEEe
Confidence 344455566688 9999999765432 22223345899999999999999998 4557777654
No 139
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=1.7e-21 Score=193.34 Aligned_cols=282 Identities=11% Similarity=0.105 Sum_probs=185.4
Q ss_pred CcceeeeecCCC------eeEEEecCCCC---EEEEEcCCCCCCCcCCCccEEEEEEccCC---cEEeeccCCCcccccC
Q 005315 234 TFNRLMRYAHPQ------VKLIDFSPGEK---YLVTYSSHEPSNPRDANRVVINIFDVRTG---KVMRDFKGSADEFAVG 301 (702)
Q Consensus 234 ~~~~~~~~~~~~------v~~i~fSpdg~---~l~t~s~d~~~~~~~~~~~~i~vwd~~~g---~~~~~~~~~~~~~~~~ 301 (702)
+.+.+.++..+. +.++-|-.-|- -|++++.. .|++|+..++ ++++++..+..++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~lw~~~~~~~~~~~~~~~~~~~~v~-- 90 (356)
T 2w18_A 24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACED-----------VVSLWKALDAWQWEKLYTWHFAEVPVL-- 90 (356)
T ss_dssp CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESS-----------EEEEEEESSSSBEEEEEEEECCSSCEE--
T ss_pred eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccc-----------eEEEcccCCCccceeeEEEeccCceeE--
Confidence 344555554332 55666654443 57777776 7999999999 89999999987763
Q ss_pred CCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCC----CCeEEEEeecCCCCCC
Q 005315 302 GTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPT----DPIISLFVPELGGGNQ 377 (702)
Q Consensus 302 ~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~----~~~la~~~~~~~~~~~ 377 (702)
.+.++| |..-|++..=|. ++...|..++++|+ +++++. ++ .
T Consensus 91 -----------~~~~~~-~~~~~~~~~~~~----------------~~~~~v~sla~spd~~~~~~~l~s-----~g--~ 135 (356)
T 2w18_A 91 -----------QIVPVP-DVYNLVCVALGN----------------LEIREIRALFCSSDDESEKQVLLK-----SG--N 135 (356)
T ss_dssp -----------EECCCT-TCCSCEEEEECS----------------SSEEEEEEECC------CCEEEEE-----EE--E
T ss_pred -----------EEEEcC-cccceeeeeecc----------------ccccceEEEEECCCccccccEEEe-----CC--C
Confidence 678888 766554443111 33445889999999 888887 22 2
Q ss_pred CcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEE--cccccccccccccEEEEEEecCCcceeEEEecCCCCc
Q 005315 378 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV--DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK 455 (702)
Q Consensus 378 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~ 455 (702)
..++ +.++ +|+.+.+.. .+.. +++|.+...+.... .+.+|...
T Consensus 136 ~~~v--~~l~----------------------~g~lv~ss~~g~d~~---------V~~~~~s~dG~~~~--s~~~~~~~ 180 (356)
T 2w18_A 136 IKAV--LGLT----------------------KRRLVSSSGTLSDQQ---------VEVMTFAEDGGGKE--NQFLMPPE 180 (356)
T ss_dssp EEEE--EEET----------------------TTEEEEEESSSTTCE---------EEEEEECTTSCEEE--EEEECCCS
T ss_pred eEEE--EecC----------------------CCcEEEecccCCCCc---------EEEEEECCCCceee--eeccCCCc
Confidence 2333 3322 233333322 1222 56777655443222 33467888
Q ss_pred eeEEEEee---CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC-----ceeEEEEccCCCEEEEEec-----
Q 005315 456 IIAFAWEP---KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-----QANALFWSPSGRFIVLAGL----- 522 (702)
Q Consensus 456 v~~~~~sp---~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-----~v~~~~~spdg~~l~~~~~----- 522 (702)
+..++|+| ++.+|++++.|+ +|+|||+++++ .++++.++ .+.+++|||+|+++++++.
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~---TIkIWDl~TGk------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w 251 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMN---NIVIWNLKTGQ------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE 251 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTS---EEEEEETTTCC------EEEEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred eeeEEeeccCCCCceEEEecCCC---cEEEEECCCCc------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence 88999999 779999999999 99999998765 66666532 4667899999998855321
Q ss_pred ----cCCCceEEEEECCCcceeee-------cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeee--c
Q 005315 523 ----KGFNGQLEFYNVDELETMAT-------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--L 588 (702)
Q Consensus 523 ----~~~dg~v~i~d~~~~~~~~~-------~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~--~ 588 (702)
+..|++|++||..+++.+.. +|...+.+..+ +|.++|+++. |++|+|||+. |+.+... |
T Consensus 252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~-----DgTIkIWDl~tGk~l~tL~gH 324 (356)
T 2w18_A 252 SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILT-----SGTIAIWDLLLGQCTALLPPV 324 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEET-----TSCEEEEETTTCSEEEEECCC
T ss_pred eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcC-----CCcEEEEECCCCcEEEEecCC
Confidence 22389999999998877643 22223333333 3778999999 9999999998 5555554 4
Q ss_pred cccEe-eEEEeeCCCCCCChhhHHHHH
Q 005315 589 KDHFF-QFLWRPRPPSFLTPEKEEEIA 614 (702)
Q Consensus 589 ~~~i~-~~~w~p~~~~l~s~~~d~~i~ 614 (702)
.+.+. .++|+|++++|++++.|++||
T Consensus 325 ~~~vvs~vafSPDG~~LaSGS~D~TIk 351 (356)
T 2w18_A 325 SDQHWSFVKWSGTDSHLLAGQKDGNIF 351 (356)
T ss_dssp --CCCCEEEECSSSSEEEEECTTSCEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCcEE
Confidence 44455 589999999999999998775
No 140
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=2.9e-21 Score=203.34 Aligned_cols=307 Identities=10% Similarity=-0.009 Sum_probs=195.2
Q ss_pred EecCCCCCCCcccccCCCcccce-----EEECCCCcEEEEEeC-Cc---eEEeecCcCcceeeeecCC-C-eeEEEecCC
Q 005315 186 LWNDARHLKPEPVYKRSYWTESF-----VQWSPLGTYLATVHR-QG---AAVWGGANTFNRLMRYAHP-Q-VKLIDFSPG 254 (702)
Q Consensus 186 ~w~~~~~~~~~~~~~~~~~~v~~-----v~~Spdg~~lat~~~-~~---i~iw~~~~~~~~~~~~~~~-~-v~~i~fSpd 254 (702)
+|-.+..+.....++.|...+.. ++|||||++||+++. ++ +.+|+.. +++........ . +..+.||||
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~-~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLN-TQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT-TCEEEECCCSSCBCSSSCEECTT
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCC-CCceEEeeeCCCCCccceEEcCC
Confidence 34443556666667766654444 899999999999987 56 6788988 55554444333 2 447889999
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec------
Q 005315 255 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG------ 328 (702)
Q Consensus 255 g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~------ 328 (702)
|++|++++.+ ..|++||+.+++....+..+..... .....+++ ++++++...
T Consensus 92 g~~l~~~~~~----------~~l~~~d~~~g~~~~~~~~~~~~~~-----------~~~~~~~~-dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 92 DDALFYVKDG----------RNLMRVDLATLEENVVYQVPAEWVG-----------YGTWVANS-DCTKLVGIEIRREDW 149 (388)
T ss_dssp SSEEEEEETT----------TEEEEEETTTCCEEEEEECCTTEEE-----------EEEEEECT-TSSEEEEEEEEGGGC
T ss_pred CCEEEEEeCC----------CeEEEEECCCCcceeeeechhhccc-----------ccceeECC-CCCeeccccccCccc
Confidence 9999999988 7899999999987766655543220 00234589 999887431
Q ss_pred -----------------CCeEEEEecCCcccccceeeccCCeeEEEeCC-CCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 329 -----------------KNMISVYETESFTLIDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 329 -----------------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
+..|.+|++.+++... ...+...+..+.||| +|+.|++..... ......+||+++.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~-~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGP-HDLVDARMWLINEDGTN 227 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSC-TTTSSCSEEEEETTSCC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecC-CCCCcceEEEEeCCCCc
Confidence 4679999998875432 223334578899999 999888742210 00113345554432211
Q ss_pred eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC--CceeEEEEeeCCcEE
Q 005315 391 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN--DKIIAFAWEPKGHRF 468 (702)
Q Consensus 391 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~--~~v~~~~~sp~g~~l 468 (702)
. ..+..+. ..+..++|||||+.|
T Consensus 228 ~-------------------------------------------------------~~l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 228 M-------------------------------------------------------RKVKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp C-------------------------------------------------------EESCCCCTTEEEEEEEECTTSSCE
T ss_pred e-------------------------------------------------------EEeeeCCCCcccccceECCCCCEE
Confidence 0 1111112 246678899999988
Q ss_pred EEEEcCCCCC--eEEEEEeecccCcCceEEEEEcCCC-----ceeEEEEccCCCEEEEEecc------CCCceEEEEECC
Q 005315 469 AVIHGDSPRP--DISFYSMRTAQHAGRVSKLTTLKGK-----QANALFWSPSGRFIVLAGLK------GFNGQLEFYNVD 535 (702)
Q Consensus 469 ~~~~~d~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~-----~v~~~~~spdg~~l~~~~~~------~~dg~v~i~d~~ 535 (702)
++.+...... .|++||+.++.. ..+..+... ....++|||||+.|++.... ..+..|++||+.
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLEN----RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCE----EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred EEEecCCCCCcceEEEEecCCCce----EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 7776532222 399999876542 244444431 12234799999998865321 126789999999
Q ss_pred Ccceeeec-ccC-----------ceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 536 ELETMATA-EHF-----------MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 536 ~~~~~~~~-~~~-----------~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+++..... +.. .+.+++|||||++|++++.. ++...||.++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~----~g~~~l~~~~ 381 (388)
T 3pe7_A 329 NGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV----HGKPALYLAT 381 (388)
T ss_dssp TTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT----TSSCEEEEEE
T ss_pred CCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC----CCceeEEEEE
Confidence 87654432 223 47889999999999988863 5666676553
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=3.4e-20 Score=186.58 Aligned_cols=252 Identities=12% Similarity=0.164 Sum_probs=180.8
Q ss_pred cEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCC-cccccceeec-cCC
Q 005315 275 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETES-FTLIDKKSLK-VEN 352 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~-~~~~~~~~~~-~~~ 352 (702)
+.|++||+.+++...... +...+. +++|+| +|++|++++++.|.+|++.+ +........+ ...
T Consensus 22 ~~i~~~d~~~~~~~~~~~-~~~~v~-------------~~~~sp-dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQ-TPELFE-------------APNWSP-DGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSCCE-------------EEEECT-TSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred eeEEEEeCCCCceeeecc-CCcceE-------------eeEECC-CCCEEEEEcCCeEEEEeCCCCCCceEecccccccc
Confidence 899999998887664443 433332 789999 99999999999999999998 6654333223 245
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEE-ccccccccccccc
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV-DRYTKTKKSTYTG 431 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~ 431 (702)
+.+++|+|++++|++... ..++...||.++........... ......+.|+|+|++|++.. .++.
T Consensus 87 ~~~~~~spdg~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~--------- 152 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDK---VEFGKSAIYLLPSTGGTPRLMTK--NLPSYWHGWSPDGKSFTYCGIRDQV--------- 152 (297)
T ss_dssp CSCCEECTTSSEEEEEEC---TTTSSCEEEEEETTCCCCEECCS--SSSEEEEEECTTSSEEEEEEEETTE---------
T ss_pred ccceEECCCCCEEEEEEe---CCCCcceEEEEECCCCceEEeec--CCCccceEECCCCCEEEEEECCCCc---------
Confidence 788999999999998321 03467889999876654222111 11244568999999988544 4433
Q ss_pred EEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEE
Q 005315 432 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANAL 508 (702)
Q Consensus 432 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~ 508 (702)
+.+|.++..+... ..+..|...+.+++|+|+|++|++++. ++ .+.+|++..... .+..+.. ..+..+
T Consensus 153 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~~~~~~~ 222 (297)
T 2ojh_A 153 FDIYSMDIDSGVE--TRLTHGEGRNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGS-----SVERITDSAYGDWFP 222 (297)
T ss_dssp EEEEEEETTTCCE--EECCCSSSCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSS-----CEEECCCCSEEEEEE
T ss_pred eEEEEEECCCCcc--eEcccCCCccccceECCCCCEEEEEecCCC---CccEEEECCCCC-----CcEEEecCCcccCCe
Confidence 6889887644332 445567788999999999999988875 55 788998863222 2344443 357889
Q ss_pred EEccCCCEEEEEeccC--------CCceEEEEECCCcce--eee--cccCceeeeEECCCCCEEEEEEe
Q 005315 509 FWSPSGRFIVLAGLKG--------FNGQLEFYNVDELET--MAT--AEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 509 ~~spdg~~l~~~~~~~--------~dg~v~i~d~~~~~~--~~~--~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
+|+|+|++|++++... .++.|++||+.+++. +.. .+...+.+++|+|+|++|++++.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 9999999999887521 126799999987655 332 44578899999999999999987
No 142
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=3.8e-21 Score=219.79 Aligned_cols=341 Identities=10% Similarity=0.091 Sum_probs=201.8
Q ss_pred ceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecC-C----CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005315 207 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAH-P----QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 280 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~-~----~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vw 280 (702)
..++|||||++++++. ++ |.+|+.. +++....+.+ . .+.+++|||||++|++++..... -.....+.|++|
T Consensus 19 ~~~~~s~dg~~~~~~~-d~~i~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~-~~~s~~~~i~~~ 95 (719)
T 1z68_A 19 FFPNWISGQEYLHQSA-DNNIVLYNIE-TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKL-WRYSYTATYYIY 95 (719)
T ss_dssp CCCEESSSSEEEEECT-TSCEEEEESS-SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEEC-SSSCEEEEEEEE
T ss_pred CccEECCCCeEEEEcC-CCCEEEEEcC-CCcEEEEEccccccccceeeEEECCCCCeEEEEecCcee-EEeecceEEEEE
Confidence 3789999998777664 55 9999999 6665544432 2 38999999999999998761000 000001789999
Q ss_pred EccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccce-eecc---------
Q 005315 281 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK-SLKV--------- 350 (702)
Q Consensus 281 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~-~~~~--------- 350 (702)
|+.+|+.+....... .+. .++||| ||++||++.++.|++|++.++...... ..+.
T Consensus 96 d~~~g~~~~~~~l~~-~~~-------------~~~~SP-DG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~ 160 (719)
T 1z68_A 96 DLSNGEFVRGNELPR-PIQ-------------YLCWSP-VGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPD 160 (719)
T ss_dssp ETTTTEECCSSCCCS-SBC-------------CEEECS-STTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred ECCCCccccceecCc-ccc-------------cceECC-CCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence 998887632111111 111 589999 999999999999999999877643211 0111
Q ss_pred --------CCeeEEEeCCCCCeEEEEeecCC---------------------------CCCCCcEEEEEecCCccee---
Q 005315 351 --------ENVMDFSWSPTDPIISLFVPELG---------------------------GGNQPARVSLVQIPSKEEL--- 392 (702)
Q Consensus 351 --------~~v~~~~~sp~~~~la~~~~~~~---------------------------~~~~~~~i~~~~~~~~~~~--- 392 (702)
.....++|||||+.|++...... ..+....|++|++.+.+..
T Consensus 161 ~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~ 240 (719)
T 1z68_A 161 WVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ 240 (719)
T ss_dssp HHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE
T ss_pred ceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee
Confidence 11248999999999998543210 0012337788888766532
Q ss_pred eee-----eecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEe--cCCcceeEEE---ecCCCCcee-----
Q 005315 393 RQK-----NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIK--ERDIPIEVLE---LDNKNDKII----- 457 (702)
Q Consensus 393 ~~~-----~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~~---l~~h~~~v~----- 457 (702)
... .........+.|+|||+.+++...+... ...+.+|++. ..+.....+. ...|...+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~-----~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 315 (719)
T 1z68_A 241 EVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN-----VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVS 315 (719)
T ss_dssp ECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT-----EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCC
T ss_pred EccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC-----eEEEEEEcccCCCCCCceEEEEecccccCCceEccccCC
Confidence 110 0012233457899998766654433210 1124444421 2221111010 025566666
Q ss_pred EEEEeeCCcEEEEE-EcCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeEEEEccCCCEEEEEecc--CCCceEEEE
Q 005315 458 AFAWEPKGHRFAVI-HGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLK--GFNGQLEFY 532 (702)
Q Consensus 458 ~~~~sp~g~~l~~~-~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~--~~dg~v~i~ 532 (702)
+++|+|+|+.|++. +.......|.+|++.++. ...+.. ..+..+.++ +|+.|++.+.. ..++...+|
T Consensus 316 ~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 316 TPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-------AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp CCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-------CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred ccEECCCCCeEEEEEEccCCceEEEEEECCCCc-------eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence 88999999987764 322223367777775433 122322 246677777 88888887752 113667777
Q ss_pred ECC--Ccc----eeee---cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 533 NVD--ELE----TMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 533 d~~--~~~----~~~~---~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
.+. ++. .+.. .+...+..+.|||+|++++....... ...+.+|++.
T Consensus 388 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~--~p~~~l~d~~ 442 (719)
T 1z68_A 388 RISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPG--IPISTLHDGR 442 (719)
T ss_dssp EEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBS--SCEEEEECSS
T ss_pred EEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCC--CCeEEEEECC
Confidence 765 231 1211 13356778999999998886654210 1346667653
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=8.9e-20 Score=189.08 Aligned_cols=279 Identities=10% Similarity=0.073 Sum_probs=197.6
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
..+..++|||+|++|++++.+... ....+.|.+||..+++.+..+....... .+.|+| +|++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~---~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~ 102 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRK---LDKGGVVYRLDPVTLEVTQAIHNDLKPF--------------GATINN-TTQT 102 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTT---TEESEEEEEECTTTCCEEEEEEESSCCC--------------SEEEET-TTTE
T ss_pred cCccceEECCCCCEEEEEcCCCcC---CCCCccEEEEcCCCCeEEEEEecCCCcc--------------eEEECC-CCCE
Confidence 358899999999999888754110 0012789999999999888886544333 689999 9996
Q ss_pred EEEec--CCeEEEEecCCcccccceeeccC---------CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCccee
Q 005315 324 FAKLG--KNMISVYETESFTLIDKKSLKVE---------NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 392 (702)
Q Consensus 324 la~~~--d~~i~v~d~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (702)
++.+. ++.|.+||..+++.+.....+.. .+.+++|+|+|+.+++ ++......|++|+..+.+.+
T Consensus 103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-----~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYI-----SGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEE-----EEESSSCEEEEEETTTTEEE
T ss_pred EEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEE-----EecCCCceEEEEcCCCCceE
Confidence 65544 79999999998887655443221 2688999999998876 32234567899998887766
Q ss_pred eeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec--CCCCceeEEEEeeCCcEEEE
Q 005315 393 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD--NKNDKIIAFAWEPKGHRFAV 470 (702)
Q Consensus 393 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~~ 470 (702)
............+.|+|+|++|++...++. +.+|++... .....+... ++...+.+++|+|+|+++++
T Consensus 178 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---------i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALDSEGKRLYTTNADGE---------LITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp EEECCCCTTCCCCEEETTTTEEEEECTTSE---------EEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred EEecCCCCccceEEECCCCCEEEEEcCCCe---------EEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 554433333556789999999998776543 556655432 122222221 24556788999999998888
Q ss_pred EEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc-cCcee
Q 005315 471 IHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMAT 549 (702)
Q Consensus 471 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~-~~~i~ 549 (702)
+..+. ..|.+||+.++. .+..+.......++|+|+|+++++++. .++.|.+||+.+++.+.... ...+.
T Consensus 248 ~~~~~--~~v~~~d~~~~~------~~~~~~~~~~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~ 317 (353)
T 3vgz_A 248 TDSKA--AEVLVVDTRNGN------ILAKVAAPESLAVLFNPARNEAYVTHR--QAGKVSVIDAKSYKVVKTFDTPTHPN 317 (353)
T ss_dssp EESSS--SEEEEEETTTCC------EEEEEECSSCCCEEEETTTTEEEEEET--TTTEEEEEETTTTEEEEEEECCSEEE
T ss_pred EeCCC--CEEEEEECCCCc------EEEEEEcCCCceEEECCCCCEEEEEEC--CCCeEEEEECCCCeEEEEEecCCCCC
Confidence 77652 289999996654 344444333467999999998777663 17999999999888776533 35678
Q ss_pred eeEECCCCCEEEEEEe
Q 005315 550 DVEWDPTGRYVATAVT 565 (702)
Q Consensus 550 ~~~~spdg~~l~t~s~ 565 (702)
+++|+|+|++|+++..
T Consensus 318 ~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 318 SLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEECTTSCEEEEEEE
T ss_pred eEEEcCCCCEEEEEEc
Confidence 9999999998887776
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=7.6e-20 Score=188.12 Aligned_cols=281 Identities=12% Similarity=0.104 Sum_probs=193.2
Q ss_pred cEEEEEeCCc-eEEeecCcCcceeeeecCC----CeeEEEecCCCCEEEE-EcCCCCCCCcCCCccEEEEEEccCCcEEe
Q 005315 216 TYLATVHRQG-AAVWGGANTFNRLMRYAHP----QVKLIDFSPGEKYLVT-YSSHEPSNPRDANRVVINIFDVRTGKVMR 289 (702)
Q Consensus 216 ~~lat~~~~~-i~iw~~~~~~~~~~~~~~~----~v~~i~fSpdg~~l~t-~s~d~~~~~~~~~~~~i~vwd~~~g~~~~ 289 (702)
.+|++++.++ |.+||.. +++.+..+..+ .+.+++|||+|++|++ +..+ +.|.+||+.+++.+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~----------~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE-KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS----------ESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETT-TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT----------TEEEEEETTTCCEEE
T ss_pred cEEEEcCCCCeEEEEECC-CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC----------CeEEEEECCCCCeEe
Confidence 4788888887 8899999 77777776533 4889999999987654 4445 789999999999887
Q ss_pred eccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe-------------cCCeEEEEecCCcccccceeeccCCeeEE
Q 005315 290 DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-------------GKNMISVYETESFTLIDKKSLKVENVMDF 356 (702)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 356 (702)
.+........ ... ...++|+| +|++++++ .++.|.+|++.+++.+..... ...+.++
T Consensus 71 ~~~~~~~~~~---~~~-----~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 71 RIDLSTPEER---VKS-----LFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp EEECCBTTEE---EEC-----TTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred eEEcCCcccc---ccc-----ccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 7764320000 000 01689999 99988877 368999999998776543322 3357889
Q ss_pred EeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccc-----------
Q 005315 357 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK----------- 425 (702)
Q Consensus 357 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~----------- 425 (702)
+|+|+|++|++ + + ..|++|+..+.+......... ....+.|+|+|.++++.........
T Consensus 141 ~~s~dg~~l~~-----~--~--~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 210 (337)
T 1pby_B 141 AWARDGSKLYG-----L--G--RDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID 210 (337)
T ss_dssp EECTTSSCEEE-----E--S--SSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred EECCCCCEEEE-----e--C--CeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccc
Confidence 99999998887 3 2 357888887776554433222 1123468999987765443221000
Q ss_pred ----ccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC
Q 005315 426 ----KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 501 (702)
Q Consensus 426 ----~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 501 (702)
......+.+|++.... ...+.+..+...+.+++|+|+|++++++ ++ .|.+||+.++. .+..+.
T Consensus 211 ~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~---~v~~~d~~~~~------~~~~~~ 277 (337)
T 1pby_B 211 PADPTAYRTGLLTMDLETGE--MAMREVRIMDVFYFSTAVNPAKTRAFGA--YN---VLESFDLEKNA------SIKRVP 277 (337)
T ss_dssp TTSGGGEEEEEEEEETTTCC--EEEEEEEECSSCEEEEEECTTSSEEEEE--ES---EEEEEETTTTE------EEEEEE
T ss_pred cccccccccceEEEeCCCCC--ceEeecCCCCCceeeEEECCCCCEEEEe--CC---eEEEEECCCCc------Ccceec
Confidence 0000024455544332 2244555667788899999999999888 44 89999986543 333333
Q ss_pred -CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeec
Q 005315 502 -GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA 543 (702)
Q Consensus 502 -~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~ 543 (702)
+..+.+++|+|+|++|++++. ++.|.+||+.+++.+...
T Consensus 278 ~~~~~~~~~~s~dg~~l~~~~~---~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 278 LPHSYYSVNVSTDGSTVWLGGA---LGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp CSSCCCEEEECTTSCEEEEESB---SSEEEEEETTTCCEEEEE
T ss_pred CCCceeeEEECCCCCEEEEEcC---CCcEEEEECcCCcEEEEE
Confidence 346789999999999999876 899999999988877653
No 145
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=6.6e-20 Score=209.54 Aligned_cols=341 Identities=9% Similarity=0.009 Sum_probs=211.5
Q ss_pred CCCCceEEEEeCCceEEEecCCCCCCCcccccCCCc---ccceEEECCCCcEEEEEeC---------Cc-eEEeecCcCc
Q 005315 169 EKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYW---TESFVQWSPLGTYLATVHR---------QG-AAVWGGANTF 235 (702)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~v~~v~~Spdg~~lat~~~---------~~-i~iw~~~~~~ 235 (702)
|+| +++....++...+|+. ..+++...+.+|.. .+.+++|||||++||+++. ++ +.+|++. ++
T Consensus 25 ~dg--~~~~~~~d~~i~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~-~g 100 (719)
T 1z68_A 25 SGQ--EYLHQSADNNIVLYNI-ETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS-NG 100 (719)
T ss_dssp SSS--EEEEECTTSCEEEEES-SSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TT
T ss_pred CCC--eEEEEcCCCCEEEEEc-CCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC-CC
Confidence 455 5666667888889998 45665555555543 4899999999999999876 44 8899998 66
Q ss_pred cee--eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcc-cccCCCCCC-----C
Q 005315 236 NRL--MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE-FAVGGTGGV-----A 307 (702)
Q Consensus 236 ~~~--~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~-~~~~~~~~~-----~ 307 (702)
+.+ ..+. ..+.+++|||||++||++. + +.|++|++.+|+..+........ +..+....+ .
T Consensus 101 ~~~~~~~l~-~~~~~~~~SPDG~~la~~~-~----------~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 101 EFVRGNELP-RPIQYLCWSPVGSKLAYVY-Q----------NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp EECCSSCCC-SSBCCEEECSSTTCEEEEE-T----------TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTT
T ss_pred ccccceecC-cccccceECCCCCEEEEEE-C----------CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecc
Confidence 552 2222 4589999999999999986 4 58999999888876543222111 100000000 0
Q ss_pred CcccceEEEcCCCCcEEEEec-CC----------------------------------eEEEEecCCcccc---c-----
Q 005315 308 GVSWPVFRWGGGKDKYFAKLG-KN----------------------------------MISVYETESFTLI---D----- 344 (702)
Q Consensus 308 ~~~w~~~~~s~~dg~~la~~~-d~----------------------------------~i~v~d~~~~~~~---~----- 344 (702)
+. ...+.||| ||++||+++ +. .|.+|++.++... .
T Consensus 169 ~~-~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 169 AT-KYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp CS-SCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred cC-cccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence 00 02589999 999999887 42 7889999887643 1
Q ss_pred ceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEe----cCCcceeeee----eecccccc-----eeEEccCC
Q 005315 345 KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ----IPSKEELRQK----NLFSVSDC-----KMYWQSSG 411 (702)
Q Consensus 345 ~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~----~~~~~~~~-----~~~~s~~g 411 (702)
....+...+..++||||+++++++. .. ......|++++ ..+.+..... ........ .+.|+|+|
T Consensus 247 ~~~~~~~~~~~~~~SpD~~~~~~~~-~~--~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 247 MIASSDYYFSWLTWVTDERVCLQWL-KR--VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp HHHTSCEEEEEEEESSSSEEEEEEE-ES--STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred cCCCCcceEEEeEEeCCCeEEEEEe-cc--ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 0112334588999999977655532 22 34556899998 6555432222 11111111 56899999
Q ss_pred CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcC--CCCCeEEEEEeeccc
Q 005315 412 DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD--SPRPDISFYSMRTAQ 489 (702)
Q Consensus 412 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d--~~~~~v~i~d~~~~~ 489 (702)
+.+++...+.. +...||.++..+.. ...+..+...+..+.++ +++.+++.+.+ .......+|.+....
T Consensus 324 ~~l~~~~~~~~-------g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~ 393 (719)
T 1z68_A 324 ISYYKIFSDKD-------GYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS 393 (719)
T ss_dssp SCEEEEEECTT-------SCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred CeEEEEEEccC-------CceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence 98776433221 11345555443322 23455556678887777 89888888875 111268888886422
Q ss_pred CcCceEEEEE-cC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCccee
Q 005315 490 HAGRVSKLTT-LK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 540 (702)
Q Consensus 490 ~~~~~~~~~~-~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~ 540 (702)
+......+.. +. ...+..+.|||+|++++....+.....+.+||+.+++.+
T Consensus 394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 2101111111 11 124678999999998886543322357889998876643
No 146
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=8e-20 Score=209.01 Aligned_cols=359 Identities=8% Similarity=0.065 Sum_probs=209.4
Q ss_pred ccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeec-CC----Ce--eEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005315 205 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA-HP----QV--KLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 277 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~-~~----~v--~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i 277 (702)
...+++|+|||++|+++ ...|.+|+.. +++....+. +. .+ ..++|||||++|++++.+... -.....+.+
T Consensus 18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~-~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ-ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ-WRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSSEEEEEE-TTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC-SSSCEEEEE
T ss_pred cccccEECCCCcEEEEc-CCcEEEEECC-CCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeee-EEEccceEE
Confidence 45689999999999997 3338999998 665444443 22 12 448999999999998875110 001112567
Q ss_pred EEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCccccccee-ecc------
Q 005315 278 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKS-LKV------ 350 (702)
Q Consensus 278 ~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~-~~~------ 350 (702)
.+||+.+|+..+ +..+..... .++||| ||+.||++.++.|.+|++.++....... .+.
T Consensus 95 ~~~d~~~~~~~~-l~~~~~~~~-------------~~~~SP-dG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g 159 (740)
T 4a5s_A 95 DIYDLNKRQLIT-EERIPNNTQ-------------WVTWSP-VGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNG 159 (740)
T ss_dssp EEEETTTTEECC-SSCCCTTEE-------------EEEECS-STTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred EEEECCCCcEEE-cccCCCcce-------------eeEECC-CCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecC
Confidence 899998887654 444333321 679999 9999999999999999998776432110 111
Q ss_pred -----------CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEc
Q 005315 351 -----------ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD 419 (702)
Q Consensus 351 -----------~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 419 (702)
.....+.|||||+.||+... .+..+++|.+....... ........+.+.+.|...
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~----d~~~v~~~~~~~~~~~~-----~~~~~~~~~~yp~~G~~~----- 225 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQF----NDTEVPLIEYSFYSDES-----LQYPKTVRVPYPKAGAVN----- 225 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTSSEEEEEEE----ECTTCCEEEEEECCSTT-----CSSCEEEEEECCBTTSCC-----
T ss_pred cccccccchhcCCCcceEECCCCCEEEEEEE----cccCCceEEEEeecCCC-----CCCCcceeecCCCCcCcC-----
Confidence 11235899999999998432 22234555443222110 000111122333443210
Q ss_pred ccccccccccccEEEEEEec---CCcceeEEEec------CCCCceeEEEEeeCCcEEEEEEcC-CCCCeEEEEEeeccc
Q 005315 420 RYTKTKKSTYTGFELFRIKE---RDIPIEVLELD------NKNDKIIAFAWEPKGHRFAVIHGD-SPRPDISFYSMRTAQ 489 (702)
Q Consensus 420 ~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~l~------~h~~~v~~~~~sp~g~~l~~~~~d-~~~~~v~i~d~~~~~ 489 (702)
....+.+|++.. ... .....+. +|...+.+++|||||+.++..... +....|.+||+.++.
T Consensus 226 --------~~~~l~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 226 --------PTVKFFVVNTDSLSSVTN-ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp --------CEEEEEEEETTSCCSSSC-CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred --------CeeEEEEEECCCCCCCCc-ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 011245566554 211 1122332 377889999999999977766543 222368999998765
Q ss_pred C----cCceEEEEEcCCCce-----eEEEEccCCCEEE-EEeccCCCceEEEEECCCcceeeec-ccCceeeeEECCCCC
Q 005315 490 H----AGRVSKLTTLKGKQA-----NALFWSPSGRFIV-LAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPTGR 558 (702)
Q Consensus 490 ~----~~~~~~~~~~~~~~v-----~~~~~spdg~~l~-~~~~~~~dg~v~i~d~~~~~~~~~~-~~~~i~~~~~spdg~ 558 (702)
. ......+..-....+ ..++|||||+.|+ ..+..+....|++||+.+++..... ....+..+. ++||+
T Consensus 297 ~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~ 375 (740)
T 4a5s_A 297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSD 375 (740)
T ss_dssp TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSS
T ss_pred cccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCC
Confidence 1 000112222233333 3789999999887 6654322467899999876654432 234455543 25588
Q ss_pred EEEEEEee--cccccccEEEEEeccceee-eec------cccEeeEEEeeCCCCCC
Q 005315 559 YVATAVTS--VHEMENGFNIWSFNGKLLY-RTL------KDHFFQFLWRPRPPSFL 605 (702)
Q Consensus 559 ~l~t~s~~--~~~~d~~v~iw~~~g~~l~-~~~------~~~i~~~~w~p~~~~l~ 605 (702)
.|+..+.. .......++..++.|.... ... ......+.|+|++++++
T Consensus 376 ~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~ 431 (740)
T 4a5s_A 376 YLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ 431 (740)
T ss_dssp EEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred EEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEE
Confidence 88777761 1011234444455554332 111 24678899999998665
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=2.5e-19 Score=184.01 Aligned_cols=281 Identities=7% Similarity=0.064 Sum_probs=181.2
Q ss_pred cCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeC-Cc-eEEeecCcCcce-eeeec-
Q 005315 167 TDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR-QG-AAVWGGANTFNR-LMRYA- 242 (702)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~~-~~~~~- 242 (702)
+++.+...|+....++.+.+|+. ..++....+..+.... +++|||+|++|++++. ++ |.+||.. +... ...+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~ 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFST-DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ-LEPPKVVAIQE 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEET-TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECS-SSSCEEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeC-cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC-CCceeEEeccc
Confidence 34445556777777778889998 4566666665555666 9999999998877766 44 8899998 6654 44443
Q ss_pred CCCeeE-EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 243 HPQVKL-IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 243 ~~~v~~-i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
+..... ++|+|+|++|+++..+ ++.+.|.+||+.+++.+..+..+.... .++|+| ||
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~-------~~~~~i~v~d~~~~~~~~~~~~~~~~~--------------~~~~sp-dg 139 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGL-------NHPFNMQSYSFLKNKFISTIPIPYDAV--------------GIAISP-NG 139 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCS-------SSSCEEEEEETTTTEEEEEEECCTTEE--------------EEEECT-TS
T ss_pred CCCCccceEECCCCCEEEEecCC-------CCcccEEEEECCCCCeEEEEECCCCcc--------------ceEECC-CC
Confidence 344555 9999999999944333 001289999999999888877655443 789999 99
Q ss_pred cEEEEec--CCe-EEEEecCCcccccce----eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 322 KYFAKLG--KNM-ISVYETESFTLIDKK----SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 322 ~~la~~~--d~~-i~v~d~~~~~~~~~~----~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
++++++. ++. |.+|++.....+... .........++|+|+|+++++. ......|.+|+..+.+...
T Consensus 140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~------~~~~~~v~v~d~~~~~~~~- 212 (331)
T 3u4y_A 140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA------NLIGNSIGILETQNPENIT- 212 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE------ETTTTEEEEEECSSTTSCE-
T ss_pred CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE------eCCCCeEEEEECCCCcccc-
Confidence 8666554 577 999998754332111 1112346778888888765541 1122334444443322100
Q ss_pred eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc-
Q 005315 395 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG- 473 (702)
Q Consensus 395 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~- 473 (702)
....+. +...+..++|+|+|++++++..
T Consensus 213 ------------------------------------------------~~~~~~---~~~~~~~~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 213 ------------------------------------------------LLNAVG---TNNLPGTIVVSRDGSTVYVLTES 241 (331)
T ss_dssp ------------------------------------------------EEEEEE---CSSCCCCEEECTTSSEEEEECSS
T ss_pred ------------------------------------------------eeeecc---CCCCCceEEECCCCCEEEEEEcC
Confidence 001111 1455678899999998877665
Q ss_pred CCCCCeEEEEEeecccCcCceEEEEEcCC------Cc---eeEEEEccCCCEEEEEeccCCCceEEEEECCCcce
Q 005315 474 DSPRPDISFYSMRTAQHAGRVSKLTTLKG------KQ---ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 539 (702)
Q Consensus 474 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~------~~---v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~ 539 (702)
++ .|.+||+.++.. ..+..+.. .. .+.++|+|+|++|++++. .++.|.+||+.+...
T Consensus 242 ~~---~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 242 TV---DVFNFNQLSGTL----SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN--ISRELKVFTISGKVV 307 (331)
T ss_dssp EE---EEEEEETTTTEE----EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET--TTTEEEEEETTSCEE
T ss_pred CC---EEEEEECCCCce----eeecccccccccCCCCcccccceEECCCCCEEEEecC--CCCcEEEEEecCCcc
Confidence 34 799999865432 12333221 11 356899999999887764 167999999986544
No 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=4.8e-19 Score=182.58 Aligned_cols=294 Identities=10% Similarity=0.037 Sum_probs=187.5
Q ss_pred EEEEeCCceEEEecCCCCCCCc-ccccCCCcccceEEECCCCcEEEEEeCC-c-eEEeecC--c-Ccceeeeec-CCCee
Q 005315 175 FVIRSGTDTEVLWNDARHLKPE-PVYKRSYWTESFVQWSPLGTYLATVHRQ-G-AAVWGGA--N-TFNRLMRYA-HPQVK 247 (702)
Q Consensus 175 ~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~v~~v~~Spdg~~lat~~~~-~-i~iw~~~--~-~~~~~~~~~-~~~v~ 247 (702)
|+....++.+.+|+....+... .....|...+.+++|||+|++|++++.+ + +.+|++. + ....+..+. +..+.
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT 87 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc
Confidence 3333557777899874333221 2223466788999999999999998886 4 8899986 1 223444443 23689
Q ss_pred EEEecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEc---cCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 248 LIDFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDV---RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 248 ~i~fSpdg~~l~t~s~-d~~~~~~~~~~~~i~vwd~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
+++|+|+|++|++++. + +.|.+||+ .+++.+..+..+.... .++|+| ++++
T Consensus 88 ~~~~s~dg~~l~~~~~~~----------~~i~~~d~~~~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~ 142 (343)
T 1ri6_A 88 HISTDHQGQFVFVGSYNA----------GNVSVTRLEDGLPVGVVDVVEGLDGCH--------------SANISP-DNRT 142 (343)
T ss_dssp EEEECTTSSEEEEEETTT----------TEEEEEEEETTEEEEEEEEECCCTTBC--------------CCEECT-TSSE
T ss_pred EEEEcCCCCEEEEEecCC----------CeEEEEECCCCccccccccccCCCCce--------------EEEECC-CCCE
Confidence 9999999998877665 5 78999999 4445555555444332 679999 9997
Q ss_pred EEEec--CCeEEEEecCC-cccccc----eeec-cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecC--Ccce--
Q 005315 324 FAKLG--KNMISVYETES-FTLIDK----KSLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP--SKEE-- 391 (702)
Q Consensus 324 la~~~--d~~i~v~d~~~-~~~~~~----~~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~--~~~~-- 391 (702)
+++++ ++.|.+|++.+ +++... .... ...+..++|+|++++|++. +..++ .+.+|+.. +...
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~----~~~~~--~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV----NELNS--SVDVWELKDPHGNIEC 216 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE----ETTTT--EEEEEESSCTTSCCEE
T ss_pred EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE----eCCCC--EEEEEEecCCCCcEEE
Confidence 77665 89999999987 543221 1111 2357889999999977652 22333 55566653 2322
Q ss_pred eeeeeecc------cccceeEEccCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEE-EecCCCCceeEEEEee
Q 005315 392 LRQKNLFS------VSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVL-ELDNKNDKIIAFAWEP 463 (702)
Q Consensus 392 ~~~~~~~~------~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~h~~~v~~~~~sp 463 (702)
........ .....+.|+|+|++|++... ++. +.+|++...+.....+ .+..+ ..+.+++|+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~---------i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~ 286 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL---------ITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDH 286 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE---------EEEEEECTTSCCEEEEEEEECS-SSCCCEEECT
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCE---------EEEEEEcCCCCceEEeeeecCC-CccceEEECC
Confidence 11111111 12225789999999887653 333 7899987432222222 23233 3488999999
Q ss_pred CCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcCC-CceeEEEEccCC
Q 005315 464 KGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSG 514 (702)
Q Consensus 464 ~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg 514 (702)
+|++|++++. ++ .|.+|+++...+ ....+..+.. ....+++|.|+-
T Consensus 287 dg~~l~~~~~~~~---~v~v~~~d~~~g--~~~~~~~~~~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 287 SGKYLIAAGQKSH---HISVYEIVGEQG--LLHEKGRYAVGQGPMWVVVNAHE 334 (343)
T ss_dssp TSSEEEEECTTTC---EEEEEEEETTTT--EEEEEEEEECSSSCCEEEEEEEC
T ss_pred CCCEEEEecCCCC---eEEEEEEcCCCc--eeeEccccccCCCCeeEEEEccc
Confidence 9999998885 56 899998764322 1234444443 346677777654
No 149
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=1.7e-18 Score=178.43 Aligned_cols=288 Identities=10% Similarity=0.087 Sum_probs=181.5
Q ss_pred cEEEEEEcc-CCc--EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C-CeEEEEecC--Cccccccee
Q 005315 275 VVINIFDVR-TGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K-NMISVYETE--SFTLIDKKS 347 (702)
Q Consensus 275 ~~i~vwd~~-~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d-~~i~v~d~~--~~~~~~~~~ 347 (702)
+.|++|++. ++. .+..+....... .++|+| ++++|++++ + +.|.+|++. ++.......
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVDVPGQVQ--------------PMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSCCC--------------CEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEEEECCCCcEEEeeeEecCCCCc--------------eEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 899999985 343 333333222222 689999 999888877 4 899999987 444322111
Q ss_pred ec-cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC---cceeeeeeecccccceeEEccCCCEEEEEE-cccc
Q 005315 348 LK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS---KEELRQKNLFSVSDCKMYWQSSGDYLAVKV-DRYT 422 (702)
Q Consensus 348 ~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~-~~~~ 422 (702)
.. ...+..++|+|++++|++. +..++. |.+|++.. .+.+.... .......+.|+|+|++++++. .++.
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~----~~~~~~--i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 80 SALPGSLTHISTDHQGQFVFVG----SYNAGN--VSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDR 152 (343)
T ss_dssp EECSSCCSEEEECTTSSEEEEE----ETTTTE--EEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred cccCCCCcEEEEcCCCCEEEEE----ecCCCe--EEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCE
Confidence 11 2368899999999988762 223444 45555422 22222221 122344578999999998876 4433
Q ss_pred cccccccccEEEEEEecCCcceeEE--Eec-CCCCceeEEEEeeCCcEEEEEE-cCCCCCeEEEEEeecccCcCc-eEEE
Q 005315 423 KTKKSTYTGFELFRIKERDIPIEVL--ELD-NKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGR-VSKL 497 (702)
Q Consensus 423 ~~~~~~~~~~~l~~l~~~~~~~~~~--~l~-~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~-~~~~ 497 (702)
+.+|++...+...... .+. .....+.+++|+|+|+++++++ .++ .|.+|++....+... ...+
T Consensus 153 ---------v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~---~i~~~~~~~~~g~~~~~~~~ 220 (343)
T 1ri6_A 153 ---------ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS---SVDVWELKDPHGNIECVQTL 220 (343)
T ss_dssp ---------EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT---EEEEEESSCTTSCCEEEEEE
T ss_pred ---------EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC---EEEEEEecCCCCcEEEEeec
Confidence 7889887633222211 222 2345788899999999887776 455 899999964222111 1122
Q ss_pred EEcCCC-----ceeEEEEccCCCEEEEEeccCCCceEEEEECC--C--cceeeec-ccCceeeeEECCCCCEEEEEEeec
Q 005315 498 TTLKGK-----QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--E--LETMATA-EHFMATDVEWDPTGRYVATAVTSV 567 (702)
Q Consensus 498 ~~~~~~-----~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~--~--~~~~~~~-~~~~i~~~~~spdg~~l~t~s~~~ 567 (702)
..+... .+..++|+|+|++|+++.. .++.|.+|++. + .+.+... ....+.+++|+|+|++|++++..
T Consensus 221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~- 297 (343)
T 1ri6_A 221 DMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK- 297 (343)
T ss_dssp ECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT-
T ss_pred cccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCC-
Confidence 222221 3567999999998886652 17999999998 2 3333332 23448899999999999988842
Q ss_pred ccccccEEEEEec---cce--eeeecc-ccEeeEEEeeCCC
Q 005315 568 HEMENGFNIWSFN---GKL--LYRTLK-DHFFQFLWRPRPP 602 (702)
Q Consensus 568 ~~~d~~v~iw~~~---g~~--l~~~~~-~~i~~~~w~p~~~ 602 (702)
++.+.+|+++ |.+ +..... .....++|.|+.+
T Consensus 298 ---~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 298 ---SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp ---TCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred ---CCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence 7999999775 322 222222 5677888888764
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=2.5e-19 Score=180.25 Aligned_cols=253 Identities=14% Similarity=0.124 Sum_probs=176.0
Q ss_pred CCc-eEEeecCcCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-CcEEeeccCCCcccc
Q 005315 223 RQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRDFKGSADEFA 299 (702)
Q Consensus 223 ~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~-g~~~~~~~~~~~~~~ 299 (702)
.++ |.+|+.. +.+......|. .|.+++|||+|++|++++ + +.|++||+.+ ++....+..+....
T Consensus 20 ~~~~i~~~d~~-~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~----------~~i~~~d~~~~~~~~~~~~~~~~~~- 86 (297)
T 2ojh_A 20 MRSSIEIFNIR-TRKMRVVWQTPELFEAPNWSPDGKYLLLNS-E----------GLLYRLSLAGDPSPEKVDTGFATIC- 86 (297)
T ss_dssp CCEEEEEEETT-TTEEEEEEEESSCCEEEEECTTSSEEEEEE-T----------TEEEEEESSSCCSCEECCCTTCCCB-
T ss_pred cceeEEEEeCC-CCceeeeccCCcceEeeEECCCCCEEEEEc-C----------CeEEEEeCCCCCCceEecccccccc-
Confidence 445 8899998 66655555555 499999999999999986 5 6899999998 88776665553211
Q ss_pred cCCCCCCCCcccceEEEcCCCCcEEEEec-C--CeEEEE--ecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCC
Q 005315 300 VGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K--NMISVY--ETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG 374 (702)
Q Consensus 300 ~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d--~~i~v~--d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~ 374 (702)
..+++|+| ++++|+++. + +...|| +..++... .......+..++|+|+++.|++. ++
T Consensus 87 -----------~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~----~~ 148 (297)
T 2ojh_A 87 -----------NNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGTPR--LMTKNLPSYWHGWSPDGKSFTYC----GI 148 (297)
T ss_dssp -----------CSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCCCE--ECCSSSSEEEEEECTTSSEEEEE----EE
T ss_pred -----------ccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCceE--EeecCCCccceEECCCCCEEEEE----EC
Confidence 11689999 999999887 2 344454 54444321 11233358889999999988853 33
Q ss_pred CCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005315 375 GNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 453 (702)
Q Consensus 375 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 453 (702)
.++..+||.++........ ..........+.|+|+|++|++... ++. ..+|.+...+... ..+..|.
T Consensus 149 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~---------~~i~~~~~~~~~~--~~~~~~~ 216 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSGVETR-LTHGEGRNDGPDYSPDGRWIYFNSSRTGQ---------MQIWRVRVDGSSV--ERITDSA 216 (297)
T ss_dssp ETTEEEEEEEETTTCCEEE-CCCSSSCEEEEEECTTSSEEEEEECTTSS---------CEEEEEETTSSCE--EECCCCS
T ss_pred CCCceEEEEEECCCCcceE-cccCCCccccceECCCCCEEEEEecCCCC---------ccEEEECCCCCCc--EEEecCC
Confidence 5566788888776554322 1222334456789999999988764 333 6889887544332 4455677
Q ss_pred CceeEEEEeeCCcEEEEEEcCCC--------CCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEec
Q 005315 454 DKIIAFAWEPKGHRFAVIHGDSP--------RPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 454 ~~v~~~~~sp~g~~l~~~~~d~~--------~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~ 522 (702)
..+.+++|+|+|++|++++.++. ...|.+|++.++.. ..+..+. ...+..++|+|+|++|++++.
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV----ETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----EEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----eeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 88999999999999999887531 12699999865442 2444432 446889999999999998876
No 151
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=1e-19 Score=191.86 Aligned_cols=324 Identities=11% Similarity=0.039 Sum_probs=201.0
Q ss_pred ecCCCCCCCcccccCCCc-----ccceEEECCCCcEEEEEeCC----ceEEeecCcCcceeeeec-CCC-eeEEEecCCC
Q 005315 187 WNDARHLKPEPVYKRSYW-----TESFVQWSPLGTYLATVHRQ----GAAVWGGANTFNRLMRYA-HPQ-VKLIDFSPGE 255 (702)
Q Consensus 187 w~~~~~~~~~~~~~~~~~-----~v~~v~~Spdg~~lat~~~~----~i~iw~~~~~~~~~~~~~-~~~-v~~i~fSpdg 255 (702)
|-....+.....++.+.. .+.+++|||||++||+.... .+.+|+.. +++...... ... ...+.|||||
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLE-TQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT-TTEEEECCCSSCBCTTTCEECTTS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECC-CCcEEEeecCCCCccccceECCCC
Confidence 433344544444544432 37889999999999988654 26788888 554333322 223 3348899999
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEE
Q 005315 256 KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISV 334 (702)
Q Consensus 256 ~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v 334 (702)
++|++++.+ +.|++||+.+++....+..+. .|++ +|++|+... +....+
T Consensus 93 ~~l~~~~~~----------~~l~~~d~~~~~~~~~~~~~~-------------------~~~~-~g~~l~~~~~~~~~~~ 142 (396)
T 3c5m_A 93 RAFFYVKNE----------LNLMKVDLETLEEQVIYTVDE-------------------EWKG-YGTWVANSDCTKLVGI 142 (396)
T ss_dssp SEEEEEETT----------TEEEEEETTTCCEEEEEECCT-------------------TEEE-EEEEEECTTSSEEEEE
T ss_pred CEEEEEEcC----------CcEEEEECCCCCcEEEEeccc-------------------ccCC-CCCEEEeccCCccccc
Confidence 999999988 789999998887655554331 2677 888888777 444444
Q ss_pred EecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEcc-CCCE
Q 005315 335 YETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS-SGDY 413 (702)
Q Consensus 335 ~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~ 413 (702)
|. ..+.|+|+++.+++.... .......|+++++.+.+..... ........+.|+| +|+.
T Consensus 143 ~~-----------------~~~~~spdg~~~~~~~~~--~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~ 202 (396)
T 3c5m_A 143 EI-----------------LKRDWQPLTSWEKFAEFY--HTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDST 202 (396)
T ss_dssp EE-----------------EGGGCCCCCSHHHHHHHH--HTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEE
T ss_pred cc-----------------cccccCCCCcceeeeeec--cCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCE
Confidence 42 134688999888751100 0245667888988765533222 1223344568999 8988
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEecCC--CCceeEEEEeeCCcEEEEEEcCCCCCe--EEEEEeeccc
Q 005315 414 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK--NDKIIAFAWEPKGHRFAVIHGDSPRPD--ISFYSMRTAQ 489 (702)
Q Consensus 414 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h--~~~v~~~~~sp~g~~l~~~~~d~~~~~--v~i~d~~~~~ 489 (702)
|++....... ... ..||.++..+... ..+..+ ...+..++|+|+|++|++++.+..... |++||+.++.
T Consensus 203 l~~~~~~~~~---~~~--~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 203 VGFCHEGPHD---LVD--ARMWLVNEDGSNV--RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp EEEEECSCSS---SCS--CCCEEEETTSCCC--EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred EEEEecCCCC---CCC--ceEEEEECCCCce--eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 8887642210 001 2344443322221 223222 235788999999999888876432224 9999986543
Q ss_pred CcCceEEEEEcCCCceeEEEEcc-CCCEEEEEecc-------------CCCceEEEEECCCcceeeec-ccC--------
Q 005315 490 HAGRVSKLTTLKGKQANALFWSP-SGRFIVLAGLK-------------GFNGQLEFYNVDELETMATA-EHF-------- 546 (702)
Q Consensus 490 ~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~-------------~~dg~v~i~d~~~~~~~~~~-~~~-------- 546 (702)
...+..+.. .. +.|+| +|+++++++.. ..++.|++||+.+++..... +..
T Consensus 276 ----~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (396)
T 3c5m_A 276 ----NEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGD 348 (396)
T ss_dssp ----EEEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTB
T ss_pred ----eEEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccc
Confidence 223444432 33 89999 99988875420 01478999999876543322 222
Q ss_pred ---ceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 547 ---MATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 547 ---~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
.+..++|+|||++|++++.. ++...||.+
T Consensus 349 ~~~~~~~~~~s~dg~~l~~~s~~----~~~~~l~~~ 380 (396)
T 3c5m_A 349 RQITHPHPSFTPNDDGVLFTSDF----EGVPAIYIA 380 (396)
T ss_dssp SSTTCCCCEECTTSSEEEEEECT----TSSCEEEEE
T ss_pred ccCCCCCceEccCCCeEEEEecC----CCCceEEEE
Confidence 25678999999999988863 445555543
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=4.4e-18 Score=176.23 Aligned_cols=274 Identities=10% Similarity=0.044 Sum_probs=190.4
Q ss_pred cccceEEECCCCcEEEEEeCC-------c-eEEeecCcCcceeeeecCC-CeeEEEecCCCCEEEEEc-CCCCCCCcCCC
Q 005315 204 WTESFVQWSPLGTYLATVHRQ-------G-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYS-SHEPSNPRDAN 273 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~-------~-i~iw~~~~~~~~~~~~~~~-~v~~i~fSpdg~~l~t~s-~d~~~~~~~~~ 273 (702)
.....++|||+|++|++++.+ + |.+||.. +++.+..+... .+..++|+|+|++|++++ .+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~--------- 110 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV-TLEVTQAIHNDLKPFGATINNTTQTLWFGNTVN--------- 110 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT-TCCEEEEEEESSCCCSEEEETTTTEEEEEETTT---------
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC-CCeEEEEEecCCCcceEEECCCCCEEEEEecCC---------
Confidence 346789999999999888743 3 8899999 77777777543 488999999999766554 45
Q ss_pred ccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec---CCeEEEEecCCcccccceeecc
Q 005315 274 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKV 350 (702)
Q Consensus 274 ~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~---d~~i~v~d~~~~~~~~~~~~~~ 350 (702)
+.|.+||+.+++.+..+..+..... ....+.. -..+.|+| ++++++.+. ++.|.+||..+++.+.....+.
T Consensus 111 -~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 184 (353)
T 3vgz_A 111 -SAVTAIDAKTGEVKGRLVLDDRKRT--EEVRPLQ--PRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG 184 (353)
T ss_dssp -TEEEEEETTTCCEEEEEESCCCCCC--SSCCCCE--EEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC
T ss_pred -CEEEEEeCCCCeeEEEEecCCCccc--cccCCCC--CceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCC
Confidence 7899999999998888766432110 0000000 01589999 999776654 7889999999887765443334
Q ss_pred CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec----ccccceeEEccCCCEEEEEEcccccccc
Q 005315 351 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF----SVSDCKMYWQSSGDYLAVKVDRYTKTKK 426 (702)
Q Consensus 351 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 426 (702)
..+..++|+|+|+.|++ ++. ...+++|+..+.+.+...... ......+.|+|+|+++++......
T Consensus 185 ~~~~~~~~s~dg~~l~~-----~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---- 253 (353)
T 3vgz_A 185 KMSTGLALDSEGKRLYT-----TNA--DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA---- 253 (353)
T ss_dssp TTCCCCEEETTTTEEEE-----ECT--TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS----
T ss_pred CccceEEECCCCCEEEE-----EcC--CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC----
Confidence 45788999999999887 333 457778898887765544431 122334789999999887765421
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcC-CCc
Q 005315 427 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQ 504 (702)
Q Consensus 427 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~ 504 (702)
.+.+|++.... ....+.. .. ...++|+|+|++++++.. ++ .|.+||+.++. .+..+. +..
T Consensus 254 ----~v~~~d~~~~~-~~~~~~~---~~-~~~~~~s~dg~~l~v~~~~~~---~v~~~d~~~~~------~~~~~~~~~~ 315 (353)
T 3vgz_A 254 ----EVLVVDTRNGN-ILAKVAA---PE-SLAVLFNPARNEAYVTHRQAG---KVSVIDAKSYK------VVKTFDTPTH 315 (353)
T ss_dssp ----EEEEEETTTCC-EEEEEEC---SS-CCCEEEETTTTEEEEEETTTT---EEEEEETTTTE------EEEEEECCSE
T ss_pred ----EEEEEECCCCc-EEEEEEc---CC-CceEEECCCCCEEEEEECCCC---eEEEEECCCCe------EEEEEecCCC
Confidence 25666654322 2233333 22 256999999998777774 55 89999986554 344443 346
Q ss_pred eeEEEEccCCCEEEEEec
Q 005315 505 ANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 505 v~~~~~spdg~~l~~~~~ 522 (702)
...++|+|+|++|+++..
T Consensus 316 ~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 316 PNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEEEECTTSCEEEEEEE
T ss_pred CCeEEEcCCCCEEEEEEc
Confidence 789999999998888775
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=4.1e-18 Score=176.12 Aligned_cols=293 Identities=11% Similarity=0.065 Sum_probs=184.0
Q ss_pred ceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCC---CeeEEEecCCCCEEEEE-cCCCCCCCcCCCccEEEEEE
Q 005315 207 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP---QVKLIDFSPGEKYLVTY-SSHEPSNPRDANRVVINIFD 281 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~---~v~~i~fSpdg~~l~t~-s~d~~~~~~~~~~~~i~vwd 281 (702)
+.++++++++++++++.++ |.+||.. +++.+..+..+ .+..++|+|+|++++++ ..+ +.|.+||
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~----------~~i~~~d 71 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY----------GDIYGID 71 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETT-TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT----------TEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECC-CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC----------CcEEEEe
Confidence 4578899999999998888 8899999 77777666533 48899999999976544 455 7899999
Q ss_pred ccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C------------CeEEEEecCCccccccee-
Q 005315 282 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K------------NMISVYETESFTLIDKKS- 347 (702)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d------------~~i~v~d~~~~~~~~~~~- 347 (702)
+.+++.+..+..+.... ..+.....+.|+| ||++|+++. + +.|.+||+.+++......
T Consensus 72 ~~t~~~~~~~~~~~~~~-------~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 143 (349)
T 1jmx_B 72 LDTCKNTFHANLSSVPG-------EVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 143 (349)
T ss_dssp TTTTEEEEEEESCCSTT-------EEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred CCCCcEEEEEEcccccc-------cccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence 99998887766432100 0000001689999 999998887 4 899999998865433211
Q ss_pred -eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccc-------cceeEEccCCC--EEE--
Q 005315 348 -LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS-------DCKMYWQSSGD--YLA-- 415 (702)
Q Consensus 348 -~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~g~--~l~-- 415 (702)
.+...+.+++|+|+|+ +++ ++.+ |++|+..+.+.+......... .....|...+. .+.
T Consensus 144 ~~~~~~~~~~~~s~dg~-l~~-----~~~~----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 144 FPMPRQVYLMRAADDGS-LYV-----AGPD----IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp EECCSSCCCEEECTTSC-EEE-----ESSS----EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred ccCCCcccceeECCCCc-EEE-----ccCc----EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 1233578899999999 544 2222 888888776654433221100 00001111110 000
Q ss_pred ---EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCCCCCeEEEEEeecccCc
Q 005315 416 ---VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHA 491 (702)
Q Consensus 416 ---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~ 491 (702)
....+.............++.+......+..+.+..+...+.+++|+| +|++++++ ++ .|.+||+.++.
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~---~v~~~d~~~~~-- 286 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN---RLAKYDLKQRK-- 286 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES---EEEEEETTTTE--
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC---eEEEEECccCe--
Confidence 000000000000000011222333233333344444567888999999 99999888 45 89999997644
Q ss_pred CceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee
Q 005315 492 GRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 542 (702)
Q Consensus 492 ~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~ 542 (702)
.+..+. ++.+.+++|+|+|++|++++. ++.|.+||+.+++.+..
T Consensus 287 ----~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 287 ----LIKAANLDHTYYCVAFDKKGDKLYLGGT---FNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp ----EEEEEECSSCCCEEEECSSSSCEEEESB---SSEEEEEETTTTEEEEE
T ss_pred ----EEEEEcCCCCccceEECCCCCEEEEecC---CCeEEEEeccccceeee
Confidence 333433 446789999999999988766 89999999998887765
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=1.2e-17 Score=190.93 Aligned_cols=362 Identities=11% Similarity=0.117 Sum_probs=215.3
Q ss_pred eEEEEeCCceEEEecCCCCCCCcccccCCCcc---cc--eEEECCCCcEEEEEeCC---------c-eEEeecCcCccee
Q 005315 174 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWT---ES--FVQWSPLGTYLATVHRQ---------G-AAVWGGANTFNRL 238 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---v~--~v~~Spdg~~lat~~~~---------~-i~iw~~~~~~~~~ 238 (702)
++++.. ++.+.+|+. .+++....+.+|... +. .++|||||++||+++.+ + +.+||+. +++..
T Consensus 29 ~~~~~~-~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~-~~~~~ 105 (740)
T 4a5s_A 29 EYLYKQ-ENNILVFNA-EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-KRQLI 105 (740)
T ss_dssp EEEEEE-TTEEEEEET-TTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEEC
T ss_pred cEEEEc-CCcEEEEEC-CCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC-CCcEE
Confidence 456555 788889998 566666667776533 32 37899999999998874 3 5699999 66544
Q ss_pred eeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeecc-CCCcccccCCCCC-----CCCccc
Q 005315 239 MRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGG-----VAGVSW 311 (702)
Q Consensus 239 ~~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~-~~~~~~~~~~~~~-----~~~~~w 311 (702)
....++ .+..++|||||++||+++ + +.|++|++.+|...+... ++...+..+.... +.+. .
T Consensus 106 ~l~~~~~~~~~~~~SPdG~~la~~~-~----------~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~-~ 173 (740)
T 4a5s_A 106 TEERIPNNTQWVTWSPVGHKLAYVW-N----------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA-Y 173 (740)
T ss_dssp CSSCCCTTEEEEEECSSTTCEEEEE-T----------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS-S
T ss_pred EcccCCCcceeeEECCCCCEEEEEE-C----------CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC-C
Confidence 333333 499999999999999985 4 579999998887654332 2211110000000 0000 1
Q ss_pred ceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC-
Q 005315 312 PVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS- 388 (702)
Q Consensus 312 ~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~- 388 (702)
..+.||| ||++||+.. +..+.+|++....... .+.+.+..+.+.+.|. .+....|++|++.+
T Consensus 174 ~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~-----------~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 174 SALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA-----------VNPTVKFFVVNTDSL 238 (740)
T ss_dssp BCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS-----------CCCEEEEEEEETTSC
T ss_pred cceEECC-CCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC-----------cCCeeEEEEEECCCC
Confidence 1479999 999999987 4558888765322111 1233455666665542 34455788888877
Q ss_pred --cce--eeeeee------cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCC----c-ceeEEEecCCC
Q 005315 389 --KEE--LRQKNL------FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD----I-PIEVLELDNKN 453 (702)
Q Consensus 389 --~~~--~~~~~~------~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----~-~~~~~~l~~h~ 453 (702)
... ...... .......+.|+|||+.+++...+... ...+.+|++.... + ....+.-..|.
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~-----~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~ 313 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN-----YSVMDICDYDESSGRWNCLVARQHIEMSTT 313 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT-----EEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC-----EEEEEEEECCCCccccceeEEEEeeeccCC
Confidence 521 111111 22234456899999977776554321 1236677776543 1 11112113455
Q ss_pred Ccee-----EEEEeeCCcEEE-EEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEecc--
Q 005315 454 DKII-----AFAWEPKGHRFA-VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLK-- 523 (702)
Q Consensus 454 ~~v~-----~~~~sp~g~~l~-~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~-- 523 (702)
..+. +++|+|||+.|+ ..+...+...|++|++.++.. ..+..+ .+..+. +++|+.|+..+..
T Consensus 314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-------~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~ 385 (740)
T 4a5s_A 314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-------TFITKGTWEVIGIE-ALTSDYLYYISNEYK 385 (740)
T ss_dssp SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-------EESCCSSSCEEEEE-EECSSEEEEEESCGG
T ss_pred ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-------EecccCCEEEEEEE-EEeCCEEEEEEecCC
Confidence 5554 789999999988 666554445788888864431 223222 344433 3557777766543
Q ss_pred C--CCceEEEEECCCccee--eec----ccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 524 G--FNGQLEFYNVDELETM--ATA----EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 524 ~--~dg~v~i~d~~~~~~~--~~~----~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
. ....|+..++.++... .+. .......+.|||+|++++....... ...+.+++..
T Consensus 386 ~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~--~p~~~l~~~~ 448 (740)
T 4a5s_A 386 GMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG--LPLYTLHSSV 448 (740)
T ss_dssp GCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS--SCEEEEEETT
T ss_pred CCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC--CCEEEEEECC
Confidence 1 2345666666654432 121 2356778999999998877765310 1245555554
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=3.2e-19 Score=198.50 Aligned_cols=276 Identities=12% Similarity=0.053 Sum_probs=171.1
Q ss_pred CcccceEEECCCCcEEEEEeC-Cc-eEEeecCcCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005315 203 YWTESFVQWSPLGTYLATVHR-QG-AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 278 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~~~~~~~~~--~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~ 278 (702)
...|.+++|||||++||+++. ++ +.||++. ++.......+. .+.+++|||| +.+++++.+.. .....
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g-------~~~~~ 91 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGETVKLNREPINSVLDPHYGVG-RVILVRDVSKG-------AEQHA 91 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEEEECCSSCCSEECEECTTCS-EEEEEEECSTT-------SCCEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEc-CCCcEeeecccccccccccCCCC-eEEEEeccCCC-------CcceE
Confidence 457999999999999999886 77 7799987 55544333333 5999999999 77777664100 03344
Q ss_pred EEEcc---CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc--EEEEecCCeEEEEecCCcccccceeeccCCe
Q 005315 279 IFDVR---TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK--YFAKLGKNMISVYETESFTLIDKKSLKVENV 353 (702)
Q Consensus 279 vwd~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~--~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v 353 (702)
||.+. .|... .+....... ..+|+| ||+ ++++..++.+.+|++.+++..... ....
T Consensus 92 l~~~~~~~~g~~~-~l~~~~~~~--------------~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~--~~~~- 152 (582)
T 3o4h_A 92 LFKVNTSRPGEEQ-RLEAVKPMR--------------ILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELA--RLPG- 152 (582)
T ss_dssp EEEEETTSTTCCE-ECTTSCSBE--------------EEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEE--EESS-
T ss_pred EEEEeccCCCccc-cccCCCCce--------------eeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEee--cCCC-
Confidence 54432 23333 332222221 458888 876 445555666669999876543211 1112
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEE
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 433 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 433 (702)
.+++|||||++|++..... .+...|+++++.
T Consensus 153 ~~~~~spDG~~la~~~~~~---~~~~~i~~~d~~---------------------------------------------- 183 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFG---GGRVSLFTSNLS---------------------------------------------- 183 (582)
T ss_dssp CEEEEEEETTEEEEEEEEE---TTEEEEEEEETT----------------------------------------------
T ss_pred ceEEECCCCCEEEEEEEcC---CCCeEEEEEcCC----------------------------------------------
Confidence 5666777777766521110 011223333321
Q ss_pred EEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEE--
Q 005315 434 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALF-- 509 (702)
Q Consensus 434 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~-- 509 (702)
. ... ..+..|.+.+.+++|||||++|+++..++ ...|++||+.++. .. .+..+ .+..++
T Consensus 184 -----~--g~~--~~l~~~~~~~~~~~~SpDG~~l~~~~~~~-~~~i~~~d~~~~~------~~-~~~~~~~~~~~~~~~ 246 (582)
T 3o4h_A 184 -----S--GGL--RVFDSGEGSFSSASISPGMKVTAGLETAR-EARLVTVDPRDGS------VE-DLELPSKDFSSYRPT 246 (582)
T ss_dssp -----T--CCC--EEECCSSCEEEEEEECTTSCEEEEEECSS-CEEEEEECTTTCC------EE-ECCCSCSHHHHHCCS
T ss_pred -----C--CCc--eEeecCCCccccceECCCCCEEEEccCCC-eeEEEEEcCCCCc------EE-EccCCCcChhhhhhc
Confidence 1 111 23446678889999999999999555444 2378889986543 22 33332 355556
Q ss_pred ------EccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 510 ------WSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 510 ------~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
|||||..+++++. +|.+++|++ ++.+. .....+.+++|+ +|+++++++.. .....+++|+..+
T Consensus 247 ~~~~~~~spdg~~~~~~~~---~g~~~l~~~--g~~~~-~~~~~v~~~~~s-dg~~l~~~s~~--~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARR---EGRSAVFID--GERVE-APQGNHGRVVLW-RGKLVTSHTSL--STPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEECTTSCEEEEEEE---TTEEEEEET--TEEEC-CCSSEEEEEEEE-TTEEEEEEEET--TEEEEEEEETTCC
T ss_pred cccceeEcCCCcEEEEEEc---CCcEEEEEE--CCeec-cCCCceEEEEec-CCEEEEEEcCC--CCCCeEEEEcCCC
Confidence 9999988888887 899999999 55554 334678899999 99999888772 0013455565443
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=4.9e-18 Score=174.49 Aligned_cols=263 Identities=13% Similarity=0.102 Sum_probs=180.8
Q ss_pred eEEEEeCCceEEEecCCCCCCCcccccCCC-c-ccceEEECCCCcEEEEEeC-Cc-eEEeecCcCcceeeeecCC-----
Q 005315 174 QFVIRSGTDTEVLWNDARHLKPEPVYKRSY-W-TESFVQWSPLGTYLATVHR-QG-AAVWGGANTFNRLMRYAHP----- 244 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~-~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~~~~~~~~~----- 244 (702)
.+++...++...+|+. ..++....+.... . .+.+++|||+|++|+.++. ++ |.+||.. +++.+..+...
T Consensus 3 ~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 3 YILAPARPDKLVVIDT-EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEETTTEEEEEET-TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECCBTTEE
T ss_pred EEEEcCCCCeEEEEEC-CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC-CCCeEeeEEcCCcccc
Confidence 4555667778889988 4555554444222 2 4789999999987765554 44 8899998 77766655421
Q ss_pred --CeeEEEecCCCCEEEEEc------------CCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcc
Q 005315 245 --QVKLIDFSPGEKYLVTYS------------SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVS 310 (702)
Q Consensus 245 --~v~~i~fSpdg~~l~t~s------------~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (702)
.+.+++|+|+|++|++++ .+ +.|.+||+.+++.+..+.......
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~----------~~i~v~d~~~~~~~~~~~~~~~~~------------ 138 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP----------TRVALYDAETLSRRKAFEAPRQIT------------ 138 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECC----------CEEEEEETTTTEEEEEEECCSSCC------------
T ss_pred cccccceEECCCCCEEEEEecccccccccccccC----------ceEEEEECCCCcEEEEEeCCCCcc------------
Confidence 578899999999998886 34 789999999998887776543322
Q ss_pred cceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCc-----------
Q 005315 311 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA----------- 379 (702)
Q Consensus 311 w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~----------- 379 (702)
.+.|+| ++++|+++ ++.|.+|++.+++.+....... ....+.|+|++..+++ .+.....
T Consensus 139 --~~~~s~-dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~-----~~~~~~~~~~~~~~~~~~ 208 (337)
T 1pby_B 139 --MLAWAR-DGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWN-----QHESSGVMATPFYTARKD 208 (337)
T ss_dssp --CEEECT-TSSCEEEE-SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCC-----CCTTTTEEEEEEEEEBTT
T ss_pred --eeEECC-CCCEEEEe-CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEee-----eccCCCceeeeeeccccc
Confidence 678999 99988877 6889999999887654332222 0124488999987765 2222221
Q ss_pred -----------EEEEEecCCcceeeeeee--cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005315 380 -----------RVSLVQIPSKEELRQKNL--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 446 (702)
Q Consensus 380 -----------~i~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 446 (702)
.|++++..+.+.. ...+ .......+.|+|+|++++++ ++. +.+|++... .....
T Consensus 209 ~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~---------v~~~d~~~~-~~~~~ 275 (337)
T 1pby_B 209 IDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNV---------LESFDLEKN-ASIKR 275 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESE---------EEEEETTTT-EEEEE
T ss_pred cccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCe---------EEEEECCCC-cCcce
Confidence 5778888776643 2222 12233457899999999887 222 667776432 22222
Q ss_pred EEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeeccc
Q 005315 447 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 489 (702)
Q Consensus 447 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 489 (702)
+.. ...+.+++|+|+|+++++++.++ .|.+||+.++.
T Consensus 276 ~~~---~~~~~~~~~s~dg~~l~~~~~~~---~i~v~d~~~~~ 312 (337)
T 1pby_B 276 VPL---PHSYYSVNVSTDGSTVWLGGALG---DLAAYDAETLE 312 (337)
T ss_dssp EEC---SSCCCEEEECTTSCEEEEESBSS---EEEEEETTTCC
T ss_pred ecC---CCceeeEEECCCCCEEEEEcCCC---cEEEEECcCCc
Confidence 333 45678999999999999887766 99999997654
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=4.2e-17 Score=168.64 Aligned_cols=266 Identities=14% Similarity=0.153 Sum_probs=159.9
Q ss_pred ceEEeecCc-Ccce--eeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcE--EeeccCCCccc
Q 005315 225 GAAVWGGAN-TFNR--LMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV--MRDFKGSADEF 298 (702)
Q Consensus 225 ~i~iw~~~~-~~~~--~~~~-~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~--~~~~~~~~~~~ 298 (702)
++.+|.++. ++.. +... +...+..++|||||+ |++++.. +..+.|.+|++.++.. +..+..+....
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~-------~~~~~v~~~~~~~g~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE-------DDEGGIAAWQIDGQTAHKLNTVVAPGTPP 88 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE-------TTEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred CEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec-------CCCceEEEEEecCCcEEEeeeeecCCCCC
Confidence 466776542 3332 2222 344588899999999 5555431 0117899999977763 33322222222
Q ss_pred ccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCC-ccc--ccceeec---------cCCeeEEEeCCCCCe
Q 005315 299 AVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETES-FTL--IDKKSLK---------VENVMDFSWSPTDPI 364 (702)
Q Consensus 299 ~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~-~~~--~~~~~~~---------~~~v~~~~~sp~~~~ 364 (702)
. .++|+| ||++|++++ ++.|.+|++.. +.. +...... ...+.+++|+|+|++
T Consensus 89 ~-------------~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 89 A-------------YVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp S-------------EEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred E-------------EEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence 1 689999 999887776 78999999863 222 1111110 113667888888883
Q ss_pred EEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005315 365 ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 444 (702)
Q Consensus 365 la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 444 (702)
+++ ...++ .|++|++.. +|.....
T Consensus 155 ~v~-----~~~~~--~v~~~~~~~---------------------~g~~~~~---------------------------- 178 (347)
T 3hfq_A 155 AVI-----DLGSD--KVYVYNVSD---------------------AGQLSEQ---------------------------- 178 (347)
T ss_dssp EEE-----ETTTT--EEEEEEECT---------------------TSCEEEE----------------------------
T ss_pred EEE-----eCCCC--EEEEEEECC---------------------CCcEEEe----------------------------
Confidence 333 22232 344444321 1111000
Q ss_pred eEEEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcC---C-----CceeEEEEccCCC
Q 005315 445 EVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK---G-----KQANALFWSPSGR 515 (702)
Q Consensus 445 ~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~-----~~v~~~~~spdg~ 515 (702)
..... .....+..++|+|+|++++++.. ++ .|.+|++....+. ...+..+. . ..+..++|+|+|+
T Consensus 179 ~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~---~v~v~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 179 SVLTM-EAGFGPRHLVFSPDGQYAFLAGELSS---QIASLKYDTQTGA--FTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp EEEEC-CTTCCEEEEEECTTSSEEEEEETTTT---EEEEEEEETTTTE--EEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred eeEEc-CCCCCCceEEECCCCCEEEEEeCCCC---EEEEEEecCCCCc--eEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 00011 11335677999999998877665 44 8999999753221 22233322 1 2477899999999
Q ss_pred EEEEEeccCCCceEEEEECCC-c--ceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 516 FIVLAGLKGFNGQLEFYNVDE-L--ETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 516 ~l~~~~~~~~dg~v~i~d~~~-~--~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+|++++.+ ++.|.+|++.. + +.+.. .+...+..++|+|||++|++++.. ++.+.+|+++
T Consensus 253 ~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----~~~v~v~~~d 316 (347)
T 3hfq_A 253 FLYVSNRG--YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN----TDNATLYARD 316 (347)
T ss_dssp EEEEEEET--TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT----TTEEEEEEEC
T ss_pred EEEEEeCC--CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC----CCcEEEEEEe
Confidence 88665431 78999999972 2 33333 223457899999999999998873 5899999764
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=1.4e-18 Score=193.32 Aligned_cols=261 Identities=9% Similarity=0.004 Sum_probs=168.5
Q ss_pred CeeEEEecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 245 QVKLIDFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~-d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
.|.+++|||||++||+++. + +++.||++.+++..+....+...+. .+.||| | ++
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~----------g~~~lw~~~~g~~~~lt~~~~~~~~-------------~~~~sp-d-~~ 77 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSE----------GSVNAYLYDGGETVKLNREPINSVL-------------DPHYGV-G-RV 77 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEET----------TEEEEEEEETTEEEECCSSCCSEEC-------------EECTTC-S-EE
T ss_pred chheeecCCCCCeEEEEEccC----------CceeEEEEcCCCcEeeecccccccc-------------cccCCC-C-eE
Confidence 5999999999999999887 7 8999999866665444333322331 679999 8 66
Q ss_pred EEEec----CCeEEEEecCC--cccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee
Q 005315 324 FAKLG----KNMISVYETES--FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 397 (702)
Q Consensus 324 la~~~----d~~i~v~d~~~--~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 397 (702)
++++. +....+|.+.. ..... ......++...+|+|+|+.+++... .....
T Consensus 78 l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~----~~~~~------------------ 134 (582)
T 3o4h_A 78 ILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGA----TEDRV------------------ 134 (582)
T ss_dssp EEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEE----CSSCE------------------
T ss_pred EEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEec----CCCCc------------------
Confidence 66544 34556665443 11111 1122234556677777765554211 11111
Q ss_pred cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCC
Q 005315 398 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 477 (702)
Q Consensus 398 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 477 (702)
.+|++.... . ..+..+.. .+++|||||+++++++.+...
T Consensus 135 -----------------------------------~l~d~~~g~--~--~~l~~~~~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 135 -----------------------------------ALYALDGGG--L--RELARLPG--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp -----------------------------------EEEEEETTE--E--EEEEEESS--CEEEEEEETTEEEEEEEEETT
T ss_pred -----------------------------------eEEEccCCc--E--EEeecCCC--ceEEECCCCCEEEEEEEcCCC
Confidence 122222110 0 01111122 788999999999988776211
Q ss_pred -CeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCc--eEEEEECCCcceeee-cccCceeeeE-
Q 005315 478 -PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNG--QLEFYNVDELETMAT-AEHFMATDVE- 552 (702)
Q Consensus 478 -~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg--~v~i~d~~~~~~~~~-~~~~~i~~~~- 552 (702)
..|++||+.++.. ..+ +-....+..++|||||++|+++.. ++ .|++||+.+++.... .+...+..++
T Consensus 174 ~~~i~~~d~~~g~~----~~l-~~~~~~~~~~~~SpDG~~l~~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 174 RVSLFTSNLSSGGL----RVF-DSGEGSFSSASISPGMKVTAGLET---AREARLVTVDPRDGSVEDLELPSKDFSSYRP 245 (582)
T ss_dssp EEEEEEEETTTCCC----EEE-CCSSCEEEEEEECTTSCEEEEEEC---SSCEEEEEECTTTCCEEECCCSCSHHHHHCC
T ss_pred CeEEEEEcCCCCCc----eEe-ecCCCccccceECCCCCEEEEccC---CCeeEEEEEcCCCCcEEEccCCCcChhhhhh
Confidence 2789999865542 122 122335789999999999996655 66 899999998776522 3445566677
Q ss_pred -------ECCCCCEEEEEEeecccccccEEEEEeccceeeeeccccEeeEEEeeCCCCCCChhhH
Q 005315 553 -------WDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKE 610 (702)
Q Consensus 553 -------~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~~~~i~~~~w~p~~~~l~s~~~d 610 (702)
|||||+.+++++. ++.++||++ |+.+. ...+.+.+++|+ +++.+++.+.+
T Consensus 246 ~~~~~~~~spdg~~~~~~~~-----~g~~~l~~~-g~~~~-~~~~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARR-----EGRSAVFID-GERVE-APQGNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEE-----TTEEEEEET-TEEEC-CCSSEEEEEEEE-TTEEEEEEEET
T ss_pred ccccceeEcCCCcEEEEEEc-----CCcEEEEEE-CCeec-cCCCceEEEEec-CCEEEEEEcCC
Confidence 9999988888888 899999999 76554 444778899999 88888776543
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=5.9e-18 Score=177.94 Aligned_cols=314 Identities=11% Similarity=0.029 Sum_probs=179.1
Q ss_pred eecCcCcceeeeec-CC-CeeE-----EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccC
Q 005315 229 WGGANTFNRLMRYA-HP-QVKL-----IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVG 301 (702)
Q Consensus 229 w~~~~~~~~~~~~~-~~-~v~~-----i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~ 301 (702)
++.. ++..+.++. ++ .... ++|||||++|++++... +...|.+||+.+++......++.....
T Consensus 15 ~~~~-~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-------g~~~l~~~d~~~g~~~~lt~~~~~~~~-- 84 (388)
T 3pe7_A 15 QDAS-TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFD-------GPWNYYLLDLNTQVATQLTEGRGDNTF-- 84 (388)
T ss_dssp ECTT-TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT-------SSCEEEEEETTTCEEEECCCSSCBCSS--
T ss_pred ecCC-CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCC-------CCceEEEEeCCCCceEEeeeCCCCCcc--
Confidence 3444 555555553 23 2333 78999999999988731 113699999988887776655543321
Q ss_pred CCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeE--EEeCCCCCeEEEEeecCCCCCCC
Q 005315 302 GTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMD--FSWSPTDPIISLFVPELGGGNQP 378 (702)
Q Consensus 302 ~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~--~~~sp~~~~la~~~~~~~~~~~~ 378 (702)
.+.||| ||++|+++. ++.|.+|++.+++.......+...+.. ..++|++..++...... .+
T Consensus 85 -----------~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~--~~-- 148 (388)
T 3pe7_A 85 -----------GGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRR--ED-- 148 (388)
T ss_dssp -----------SCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEG--GG--
T ss_pred -----------ceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccC--cc--
Confidence 358999 999999988 789999999987654333223222322 34488888887521110 00
Q ss_pred cEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeE
Q 005315 379 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA 458 (702)
Q Consensus 379 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~ 458 (702)
.........+.. .+.... ...||.++...... ..+..+...+..
T Consensus 149 ----------~~~~~~~~~~~~-----~~~~~~-------------------~~~l~~~d~~~g~~--~~l~~~~~~~~~ 192 (388)
T 3pe7_A 149 ----------WVPLTDWKKFHE-----FYFTKP-------------------CCRLMRVDLKTGES--TVILQENQWLGH 192 (388)
T ss_dssp ----------CCCCCSHHHHHH-----HGGGCC-------------------CEEEEEEETTTCCE--EEEEEESSCEEE
T ss_pred ----------cccccccchhhh-----hhccCC-------------------cceEEEEECCCCce--EEeecCCccccc
Confidence 000000000000 000000 01233333222222 222234667889
Q ss_pred EEEee-CCcEEEEEEcCCC---CCeEEEEEeecccCcCceEEEEEcCC-CceeEEEEccCCCEEEEEeccC--CCceEEE
Q 005315 459 FAWEP-KGHRFAVIHGDSP---RPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKG--FNGQLEF 531 (702)
Q Consensus 459 ~~~sp-~g~~l~~~~~d~~---~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~--~dg~v~i 531 (702)
++|+| +|++|+++..... ...|.++++..+.. ..+..... ..+..++|||||+.|++.+... .++.|++
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM----RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC----EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce----EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 99999 9999998876321 23677777643321 12211111 2467889999999887765422 1234999
Q ss_pred EECCCcceeee--ccc-----CceeeeEECCCCCEEEEEEee----cccccccEEEEEeccceeeee--ccc--------
Q 005315 532 YNVDELETMAT--AEH-----FMATDVEWDPTGRYVATAVTS----VHEMENGFNIWSFNGKLLYRT--LKD-------- 590 (702)
Q Consensus 532 ~d~~~~~~~~~--~~~-----~~i~~~~~spdg~~l~t~s~~----~~~~d~~v~iw~~~g~~l~~~--~~~-------- 590 (702)
||+.+++.... ... .....+.|+|||++|++.... ....+..|++|++.+..+... +..
T Consensus 269 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (388)
T 3pe7_A 269 ADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGD 348 (388)
T ss_dssp ECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTB
T ss_pred EecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccc
Confidence 99998764322 111 112345899999998875420 001156899999987655433 222
Q ss_pred ---cEeeEEEeeCCCCCCChh
Q 005315 591 ---HFFQFLWRPRPPSFLTPE 608 (702)
Q Consensus 591 ---~i~~~~w~p~~~~l~s~~ 608 (702)
.+.+++|+|+|+.|+..+
T Consensus 349 ~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 349 RQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp SSTTCCCCEECTTSSEEEEEE
T ss_pred cccCCCCccCCCCCCEEEEEe
Confidence 467889999999887544
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.78 E-value=6e-16 Score=160.90 Aligned_cols=300 Identities=10% Similarity=0.086 Sum_probs=179.0
Q ss_pred CCCcEEEEEeC-----CceEEeecCc-Cc--ceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005315 213 PLGTYLATVHR-----QGAAVWGGAN-TF--NRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 284 (702)
Q Consensus 213 pdg~~lat~~~-----~~i~iw~~~~-~~--~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~ 284 (702)
+...+++.|+. .+|.+|.++. ++ ..+..++...+..++|||||++|++++.+. ...+.|.+|++..
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~------~~~~~v~~~~~~~ 84 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFS------KDQAAVSAFAFDK 84 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCS------STTCEEEEEEEET
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccC------CCCCcEEEEEEeC
Confidence 33445555532 2488886541 22 333334344588899999999999988751 1126899998865
Q ss_pred --CcE--EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceee----------
Q 005315 285 --GKV--MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSL---------- 348 (702)
Q Consensus 285 --g~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~---------- 348 (702)
|+. +.....+... ...++. ++++|+++. ++.|.+|++.....+.....
T Consensus 85 ~~g~~~~~~~~~~~~~~---------------p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~ 148 (361)
T 3scy_A 85 EKGTLHLLNTQKTMGAD---------------PCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPD 148 (361)
T ss_dssp TTTEEEEEEEEECSSSC---------------EEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC
T ss_pred CCCcEEEeeEeccCCCC---------------cEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCC
Confidence 443 2233222211 123334 667666665 88999999975443322110
Q ss_pred ----ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc----c-ee-----eeeee-cccccceeEEccCCCE
Q 005315 349 ----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK----E-EL-----RQKNL-FSVSDCKMYWQSSGDY 413 (702)
Q Consensus 349 ----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~----~-~~-----~~~~~-~~~~~~~~~~s~~g~~ 413 (702)
....+.+++|+|+|++|++. ...+..+.+|.++.... + .. ..... .......+.|+|+|++
T Consensus 149 ~~~~~~~~~~~~~~spdg~~l~~~----~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 149 KERQTMPHLHCVRITPDGKYLLAD----DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp TTTCSSCCEEEEEECTTSSEEEEE----ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred ccccCCCcceEEEECCCCCEEEEE----eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence 11235789999999977652 22344444444443332 1 10 11111 1223346789999999
Q ss_pred EEEEEc-ccccccccccccEEEEEEecCCcc-eeEEE-ecCCCCceeEEEEeeCCcEEEEEEcC--CCCCeEEEEEeecc
Q 005315 414 LAVKVD-RYTKTKKSTYTGFELFRIKERDIP-IEVLE-LDNKNDKIIAFAWEPKGHRFAVIHGD--SPRPDISFYSMRTA 488 (702)
Q Consensus 414 l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~-l~~h~~~v~~~~~sp~g~~l~~~~~d--~~~~~v~i~d~~~~ 488 (702)
+++... ++. +.+|++...... ...+. ...+...+.+++|+|+|++|+++..+ + .|.+|++...
T Consensus 225 l~v~~~~~~~---------v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~---~i~v~~~~~~ 292 (361)
T 3scy_A 225 AYLINEIGGT---------VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD---GVAIFKVDET 292 (361)
T ss_dssp EEEEETTTCE---------EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC---EEEEEEECTT
T ss_pred EEEEcCCCCe---------EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC---EEEEEEEcCC
Confidence 888764 333 788888732211 11111 22334557899999999999877765 4 8999999632
Q ss_pred cCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEEC--CCcceeeec---ccCceeeeEEC
Q 005315 489 QHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV--DELETMATA---EHFMATDVEWD 554 (702)
Q Consensus 489 ~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~--~~~~~~~~~---~~~~i~~~~~s 554 (702)
.+ ....+..+. +..+..++|+|+|++|++++.. ++.|.+|.+ .++++.... +...++|+.|.
T Consensus 293 ~g--~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~--~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 293 NG--TLTKVGYQLTGIHPRNFIITPNGKYLLVACRD--TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TC--CEEEEEEEECSSCCCEEEECTTSCEEEEEETT--TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CC--cEEEeeEecCCCCCceEEECCCCCEEEEEECC--CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 22 122344333 4467899999999999988741 688999654 466665443 33567788875
No 161
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.77 E-value=2.6e-16 Score=162.69 Aligned_cols=255 Identities=11% Similarity=0.136 Sum_probs=158.7
Q ss_pred CCCcccceEEECCCCcEEEEEeC---Cc-eEEeecCcCcc--eeeee--cCCCeeEEEecCCCCEEEEEc-CCCCCCCcC
Q 005315 201 RSYWTESFVQWSPLGTYLATVHR---QG-AAVWGGANTFN--RLMRY--AHPQVKLIDFSPGEKYLVTYS-SHEPSNPRD 271 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~---~~-i~iw~~~~~~~--~~~~~--~~~~v~~i~fSpdg~~l~t~s-~d~~~~~~~ 271 (702)
.+......++|||||+ |++++. ++ |.+|++. ++. .+..+ +...+..++|||||++|++++ .+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~-~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~------- 107 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQID-GQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK------- 107 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEE-TTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT-------
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEec-CCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC-------
Confidence 4456678899999999 555543 34 8899987 443 33332 234589999999999998887 45
Q ss_pred CCccEEEEEEcc-CCc--EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecC-Ccccccce
Q 005315 272 ANRVVINIFDVR-TGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE-SFTLIDKK 346 (702)
Q Consensus 272 ~~~~~i~vwd~~-~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~-~~~~~~~~ 346 (702)
+.|.+|++. +|. .+..+........ .........+++|+| ||+++++.. ++.|.+|++. ++.+....
T Consensus 108 ---~~v~v~~~~~~g~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~ 179 (347)
T 3hfq_A 108 ---GTAEVMKIAADGALTLTDTVQHSGHGPR----PEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQS 179 (347)
T ss_dssp ---TEEEEEEECTTSCEEEEEEEECCCCCSS----TTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred ---CEEEEEEeCCCCCeeecceeecCCCCCC----ccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEee
Confidence 789999985 333 2333322110000 000000011589999 999666555 8899999998 44432211
Q ss_pred --eecc-CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcce--eeeeeecc------cccceeEEccCCCEEE
Q 005315 347 --SLKV-ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE--LRQKNLFS------VSDCKMYWQSSGDYLA 415 (702)
Q Consensus 347 --~~~~-~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~------~~~~~~~~s~~g~~l~ 415 (702)
.... .++..++|+|+|++|++. ...++.+.+|.++....+. +....... .....+.|+|+|++|+
T Consensus 180 ~~~~~~g~~p~~~~~spdg~~l~v~----~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 180 VLTMEAGFGPRHLVFSPDGQYAFLA----GELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY 255 (347)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEE----ETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred eEEcCCCCCCceEEECCCCCEEEEE----eCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence 1112 257889999999977652 2344555555555433332 11111111 1234578999999987
Q ss_pred EEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeec
Q 005315 416 VKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 487 (702)
Q Consensus 416 ~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 487 (702)
+... ++. +.+|++...+.......+..+...+.+++|+|+|++|+++..+.. .|.+|++..
T Consensus 256 v~~~~~~~---------v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~--~v~v~~~d~ 317 (347)
T 3hfq_A 256 VSNRGYNT---------LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD--NATLYARDL 317 (347)
T ss_dssp EEEETTTE---------EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT--EEEEEEECT
T ss_pred EEeCCCCE---------EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC--cEEEEEEeC
Confidence 6554 333 788998754322233344455667899999999999998887532 899997753
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=3.5e-16 Score=162.88 Aligned_cols=251 Identities=10% Similarity=0.133 Sum_probs=159.4
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-CCcEEeeccC--CCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-TGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~-~g~~~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
.+..++|||+|++|++++.+ .|.+|++. +|+....... +.... .++|+| ||
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-----------~v~~~~~~~~g~~~~~~~~~~~g~~~--------------~~~~sp-dg 94 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-----------KWSSFAVKSPTEIVHEASHPIGGHPR--------------ANDADT-NT 94 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-----------EEEEEEEEETTEEEEEEEEECCSSGG--------------GGCTTS-CC
T ss_pred CCcEEEECCCCCEEEEEccc-----------eEEEEEECCCCCEEEeeEeecCCCCc--------------cEEECC-CC
Confidence 58899999999999888765 69999997 7876543321 11111 468999 99
Q ss_pred cE--EEEe--------------cCCeEEEEecC-Ccccccceee----ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcE
Q 005315 322 KY--FAKL--------------GKNMISVYETE-SFTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPAR 380 (702)
Q Consensus 322 ~~--la~~--------------~d~~i~v~d~~-~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 380 (702)
++ ++++ .++.+.+|++. ++++...... +...+.+++|+|+|++|++ +. .+...
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~-----~~-~~~~~ 168 (365)
T 1jof_A 95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS-----AD-LTANK 168 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE-----EE-TTTTE
T ss_pred CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE-----Ec-CCCCE
Confidence 94 4444 47789999987 3544322211 2345788888888887765 11 11224
Q ss_pred EEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEE
Q 005315 381 VSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 460 (702)
Q Consensus 381 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 460 (702)
|++|+... +|+... ...+.++.|...+..++
T Consensus 169 v~~~~~~~---------------------~g~~~~----------------------------~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 169 LWTHRKLA---------------------SGEVEL----------------------------VGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEECT---------------------TSCEEE----------------------------EEEEECSSTTCCEEEEE
T ss_pred EEEEEECC---------------------CCCEEE----------------------------eeeEecCCCCCCCCEeE
Confidence 44444320 111100 00011212345688899
Q ss_pred EeeCCcEEEEEEc-CCCCCeEEEEEeecccCcCc--eEEEEEcCCC------------ceeEEE-EccCCCEEEEEeccC
Q 005315 461 WEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGR--VSKLTTLKGK------------QANALF-WSPSGRFIVLAGLKG 524 (702)
Q Consensus 461 ~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~--~~~~~~~~~~------------~v~~~~-~spdg~~l~~~~~~~ 524 (702)
|+|+|++++++.. ++ .|.+|++....+... ...+..++.+ .+..++ |||||++|++++.+.
T Consensus 200 ~spdg~~l~v~~~~~~---~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 200 MHPTGNYLYALMEAGN---RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp ECTTSSEEEEEETTTT---EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred ECCCCCEEEEEECCCC---eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999988876 34 899998863222110 1123333321 367899 999999998876522
Q ss_pred CC----ceEEEEECC-Ccceee----e-cccCceeeeEECC---CCCEEEEEEeecccccccEEEEEecccee
Q 005315 525 FN----GQLEFYNVD-ELETMA----T-AEHFMATDVEWDP---TGRYVATAVTSVHEMENGFNIWSFNGKLL 584 (702)
Q Consensus 525 ~d----g~v~i~d~~-~~~~~~----~-~~~~~i~~~~~sp---dg~~l~t~s~~~~~~d~~v~iw~~~g~~l 584 (702)
+ +.|.+|+++ ++++.. . .+......++|+| ||++|++++.. ++.|.+|++++..+
T Consensus 277 -~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~----~~~v~v~~~~~~~l 344 (365)
T 1jof_A 277 -KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ----EGWLEIYRWKDEFL 344 (365)
T ss_dssp -STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS----SCEEEEEEEETTEE
T ss_pred -CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC----CCeEEEEEEchhhC
Confidence 2 289999996 555432 1 1334567899999 89999998862 48999999986644
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=7.8e-18 Score=177.42 Aligned_cols=300 Identities=11% Similarity=0.085 Sum_probs=181.2
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
+.+++|||||++|++..... +...|.+||+.+++.......+.... . .+.||| ||++|+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~-------g~~~l~~~d~~~~~~~~l~~~~~~~~------------~-~~~~sp-dg~~l~ 96 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFD-------GNRNYYLLNLETQQAVQLTEGKGDNT------------F-GGFIST-DERAFF 96 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTT-------SSCEEEEEETTTTEEEECCCSSCBCT------------T-TCEECT-TSSEEE
T ss_pred eecCcCCCCCCEEEEEEecC-------CCceEEEEECCCCcEEEeecCCCCcc------------c-cceECC-CCCEEE
Confidence 67889999999998876541 11478999998887654433332211 1 368999 999998
Q ss_pred Eec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccce
Q 005315 326 KLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 404 (702)
Q Consensus 326 ~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 404 (702)
+++ ++.|.+|++.++........+. .|+|+|+.|++ ........++. ..
T Consensus 97 ~~~~~~~l~~~d~~~~~~~~~~~~~~------~~~~~g~~l~~-----~~~~~~~~~~~-------------------~~ 146 (396)
T 3c5m_A 97 YVKNELNLMKVDLETLEEQVIYTVDE------EWKGYGTWVAN-----SDCTKLVGIEI-------------------LK 146 (396)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCT------TEEEEEEEEEC-----TTSSEEEEEEE-------------------EG
T ss_pred EEEcCCcEEEEECCCCCcEEEEeccc------ccCCCCCEEEe-----ccCCccccccc-------------------cc
Confidence 888 7789999998765432221111 27888888887 33332222111 01
Q ss_pred eEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee-CCcEEEEEEcCCC---CCeE
Q 005315 405 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSP---RPDI 480 (702)
Q Consensus 405 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~---~~~v 480 (702)
..|+|+|+.+++...... .....||.++..+..... +..+...+..+.|+| +|++|++++.+.. ...|
T Consensus 147 ~~~spdg~~~~~~~~~~~------~~~~~l~~~d~~~g~~~~--~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (396)
T 3c5m_A 147 RDWQPLTSWEKFAEFYHT------NPTCRLIKVDIETGELEV--IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM 218 (396)
T ss_dssp GGCCCCCSHHHHHHHHHT------CCCEEEEEEETTTCCEEE--EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred cccCCCCcceeeeeeccC------CCcceEEEEECCCCcEEe--eccCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence 347888887665421000 001234444433222222 223467789999999 8998888875321 0367
Q ss_pred EEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCC--ceEEEEECCCcceeeecccCceeeeEECC-C
Q 005315 481 SFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFN--GQLEFYNVDELETMATAEHFMATDVEWDP-T 556 (702)
Q Consensus 481 ~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~d--g~v~i~d~~~~~~~~~~~~~~i~~~~~sp-d 556 (702)
.+|++.++.. ..+..-. ...+..++|||+|++|++++..... +.|++||+.+++........... +.|+| |
T Consensus 219 ~~~d~~~~~~----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~d 293 (396)
T 3c5m_A 219 WLVNEDGSNV----RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFD 293 (396)
T ss_dssp EEEETTSCCC----EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSS
T ss_pred EEEECCCCce----eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCC
Confidence 7888743321 1211110 1247789999999988877652112 55999999877654332222233 89999 9
Q ss_pred CCEEEEEEeec-----------ccccccEEEEEeccceeeee--ccc-----------cEeeEEEeeCCCCCCChhh
Q 005315 557 GRYVATAVTSV-----------HEMENGFNIWSFNGKLLYRT--LKD-----------HFFQFLWRPRPPSFLTPEK 609 (702)
Q Consensus 557 g~~l~t~s~~~-----------~~~d~~v~iw~~~g~~l~~~--~~~-----------~i~~~~w~p~~~~l~s~~~ 609 (702)
|++|++++... ...+..+++|++.+..+... +.. ....+.|+|+++.|+..+.
T Consensus 294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp SSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 99888765210 00147899999875544332 122 2566899999998876543
No 164
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.76 E-value=1.9e-15 Score=157.18 Aligned_cols=299 Identities=12% Similarity=0.120 Sum_probs=182.7
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc--cCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec
Q 005315 251 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDV--RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 328 (702)
Q Consensus 251 fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~ 328 (702)
..+...+++.|+.... ..+.|.+|.+ .+|+.......+..... .++|+| ||++|++++
T Consensus 9 ~~~~~~~~~vg~y~~~------~~~~i~~~~~d~~~g~~~~~~~~~~~~p~-------------~l~~sp-dg~~l~~~~ 68 (361)
T 3scy_A 9 TTDSELTMLVGTYTSG------NSKGIYTFRFNEETGESLPLSDAEVANPS-------------YLIPSA-DGKFVYSVN 68 (361)
T ss_dssp GGGGEEEEEEEECCSS------SCCEEEEEEEETTTCCEEEEEEEECSCCC-------------SEEECT-TSSEEEEEE
T ss_pred hCCCceEEEEEeccCC------CCCCEEEEEEeCCCCCEEEeecccCCCCc-------------eEEECC-CCCEEEEEE
Confidence 3445566677765411 1256888866 45654332211221111 579999 999988887
Q ss_pred -C----CeEEEEecCC--cccccceee--ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee---e
Q 005315 329 -K----NMISVYETES--FTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK---N 396 (702)
Q Consensus 329 -d----~~i~v~d~~~--~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~ 396 (702)
+ +.|.+|++.. +.+...... +......+++ ++++|++. ......+.+|++.....+... .
T Consensus 69 ~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~------~~~~~~v~~~~~~~~g~~~~~~~~~ 140 (361)
T 3scy_A 69 EFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTA------NYSGGSITVFPIGQDGALLPASDVI 140 (361)
T ss_dssp CCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEE------ETTTTEEEEEEBCTTSCBCSCSEEE
T ss_pred ccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEE------ECCCCEEEEEEeCCCCcCcccceeE
Confidence 3 7999998865 332211112 2234667777 78877662 122345666665433222111 0
Q ss_pred ecc-----------cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCc----c-e------eEEEecCCCC
Q 005315 397 LFS-----------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI----P-I------EVLELDNKND 454 (702)
Q Consensus 397 ~~~-----------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~-~------~~~~l~~h~~ 454 (702)
.+. .....+.|+|+|++|++..... ..+.+|++..... . . ....+ .+..
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--------~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 211 (361)
T 3scy_A 141 EFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT--------DQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGS 211 (361)
T ss_dssp ECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT--------TEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTC
T ss_pred EccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC--------CEEEEEEEcCCCCcccccceeecccccceec-CCCC
Confidence 010 0113478999999888765421 1278888876542 1 1 12223 3355
Q ss_pred ceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcC---C--CceeEEEEccCCCEEEEEeccCCCce
Q 005315 455 KIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK---G--KQANALFWSPSGRFIVLAGLKGFNGQ 528 (702)
Q Consensus 455 ~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~--~~v~~~~~spdg~~l~~~~~~~~dg~ 528 (702)
.+..++|+|+|++++++.. ++ .|.+|++.++. +..+..+. . .....++|||||++|+++..+. ++.
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~---~v~v~~~~~g~----~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~-~~~ 283 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGG---TVIAFRYADGM----LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK-ADG 283 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTC---EEEEEEEETTE----EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-SCE
T ss_pred CCeEEEEcCCCCEEEEEcCCCC---eEEEEEecCCc----eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-CCE
Confidence 6789999999999888874 55 89999997543 22333332 1 2357899999999998887621 378
Q ss_pred EEEEECC--Ccc--eeeecc-cCceeeeEECCCCCEEEEEEeecccccccEEEEEec---cceeee---eccccEeeEEE
Q 005315 529 LEFYNVD--ELE--TMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN---GKLLYR---TLKDHFFQFLW 597 (702)
Q Consensus 529 v~i~d~~--~~~--~~~~~~-~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~---g~~l~~---~~~~~i~~~~w 597 (702)
|.+|+++ +++ .+.... ...+.+++|+|||++|++++.. ++.+.+|.++ |.+... .+...+.++.|
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~----~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD----TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETT----TTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECC----CCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 9999986 344 232221 3467899999999999998853 7899998765 333222 24467888888
Q ss_pred e
Q 005315 598 R 598 (702)
Q Consensus 598 ~ 598 (702)
.
T Consensus 360 ~ 360 (361)
T 3scy_A 360 V 360 (361)
T ss_dssp E
T ss_pred c
Confidence 6
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=4.3e-16 Score=160.82 Aligned_cols=270 Identities=13% Similarity=0.067 Sum_probs=170.6
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCC--cccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 248 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 248 ~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
.++++++++++++++.+ +.|.+||+.+++.++.+..+. ... .++|+| ++++++
T Consensus 4 g~~~~~~~~~~v~~~~~----------~~v~~~d~~~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~~~ 58 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYP----------NNLHVVDVASDTVYKSCVMPDKFGPG--------------TAMMAP-DNRTAY 58 (349)
T ss_dssp CCCCCTTCEEEEEEETT----------TEEEEEETTTTEEEEEEECSSCCSSC--------------EEEECT-TSSEEE
T ss_pred cccccCCCEEEEEeCCC----------CeEEEEECCCCcEEEEEecCCCCCCc--------------eeEECC-CCCEEE
Confidence 46789999999999998 899999999999888887654 222 689999 998665
Q ss_pred Ee-c-CCeEEEEecCCcccccceeecc------CCeeEEEeCCCCCeEEEEeec-----CCCCCCCcEEEEEecCCccee
Q 005315 326 KL-G-KNMISVYETESFTLIDKKSLKV------ENVMDFSWSPTDPIISLFVPE-----LGGGNQPARVSLVQIPSKEEL 392 (702)
Q Consensus 326 ~~-~-d~~i~v~d~~~~~~~~~~~~~~------~~v~~~~~sp~~~~la~~~~~-----~~~~~~~~~i~~~~~~~~~~~ 392 (702)
.+ . ++.|.+|++.+++.+....... ..+..++|+|+|++|++.... .........|++|++.+.+..
T Consensus 59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 44 4 8999999999887654433221 226889999999999873211 000001247888888764332
Q ss_pred eeeee--cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC-----------------
Q 005315 393 RQKNL--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN----------------- 453 (702)
Q Consensus 393 ~~~~~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~----------------- 453 (702)
..... .......+.|+|+|+ +++...+ +.+|++.... ....+......
T Consensus 139 ~~~~~~~~~~~~~~~~~s~dg~-l~~~~~~-----------i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (349)
T 1jmx_B 139 KPVRTFPMPRQVYLMRAADDGS-LYVAGPD-----------IYKMDVKTGK-YTVALPLRNWNRKGYSAPDVLYFWPHQS 205 (349)
T ss_dssp CCSEEEECCSSCCCEEECTTSC-EEEESSS-----------EEEECTTTCC-EEEEECSTTCCCTTBCCCBCCCCCCCCC
T ss_pred ceeeeccCCCcccceeECCCCc-EEEccCc-----------EEEEeCCCCc-eeccccccccCCccccCccceeeecCCC
Confidence 21111 122345567999999 5553221 4555443221 11111110000
Q ss_pred --C---ceeEEEEeeCCcEE----------EEEE-cCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEcc-CCCE
Q 005315 454 --D---KIIAFAWEPKGHRF----------AVIH-GDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP-SGRF 516 (702)
Q Consensus 454 --~---~v~~~~~sp~g~~l----------~~~~-~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~ 516 (702)
. ....+++++++... +... ..+ .+.++++.. .+..+..++|+| +|++
T Consensus 206 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~~~~~sp~dg~~ 269 (349)
T 1jmx_B 206 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG---KTHTQEFAD-------------LTELYFTGLRSPKDPNQ 269 (349)
T ss_dssp TTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC---CEEEEEEEE-------------CSSCEEEEEECSSCTTE
T ss_pred cceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC---cEEeccccc-------------CCCcceeeEecCCCCCE
Confidence 0 23345666544211 1011 112 344444311 234678899999 9999
Q ss_pred EEEEeccCCCceEEEEECCCcceeeec-ccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 517 IVLAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 517 l~~~~~~~~dg~v~i~d~~~~~~~~~~-~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
++++ ++.|.+||+.+++.+... ....+.+++|+|+|++|++++. ++.+.+|+...
T Consensus 270 l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~v~v~d~~~ 325 (349)
T 1jmx_B 270 IYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT-----FNDLAVFNPDT 325 (349)
T ss_dssp EEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB-----SSEEEEEETTT
T ss_pred EEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecC-----CCeEEEEeccc
Confidence 9887 479999999988876653 3345789999999999998766 89999999874
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=1.4e-15 Score=158.34 Aligned_cols=251 Identities=10% Similarity=0.048 Sum_probs=159.5
Q ss_pred cccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecC---CCeeEEEecCCCCE--EEEEc-------------CCC
Q 005315 204 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAH---PQVKLIDFSPGEKY--LVTYS-------------SHE 265 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~---~~v~~i~fSpdg~~--l~t~s-------------~d~ 265 (702)
..+.+++|||||++|++++.+.+.+|++..+++......+ ..+.+++|||||++ +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~- 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA- 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC-
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC-
Confidence 4678999999999999888878889998522333322221 23667999999995 44553 34
Q ss_pred CCCCcCCCccEEEEEEcc-CCcEEeeccC----CCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecC
Q 005315 266 PSNPRDANRVVINIFDVR-TGKVMRDFKG----SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETE 338 (702)
Q Consensus 266 ~~~~~~~~~~~i~vwd~~-~g~~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~ 338 (702)
+.+.+|++. +|+....+.. +.... ..+.|+| ||++++++. ++.|.+|++.
T Consensus 119 ---------g~v~v~~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~sp-dG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 119 ---------GYGNVFSVSETGKLEKNVQNYEYQENTGI-------------HGMVFDP-TETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp ---------CEEEEEEECTTCCEEEEEEEEECCTTCCE-------------EEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred ---------ceEEEEccCCCCcCcceEeeEEeCCCCcc-------------eEEEECC-CCCEEEEEcCCCCEEEEEEEC
Confidence 789999996 4665443331 11111 1689999 999887765 6899999998
Q ss_pred -Ccccccceeec----cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCccee---eeeeecc------c----
Q 005315 339 -SFTLIDKKSLK----VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL---RQKNLFS------V---- 400 (702)
Q Consensus 339 -~~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~------~---- 400 (702)
++++....... ..++..++|+|+|++|++. ...++.+.+|.++..+.+.. ....... .
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~----~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL----MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE----ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE----ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence 66543221221 3458999999999988762 11345556665654344321 1111110 1
Q ss_pred ---ccceeE-EccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE-ecCCCCceeEEEEee---CCcEEEEEE
Q 005315 401 ---SDCKMY-WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE-LDNKNDKIIAFAWEP---KGHRFAVIH 472 (702)
Q Consensus 401 ---~~~~~~-~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~h~~~v~~~~~sp---~g~~l~~~~ 472 (702)
....+. |+|+|++|++....... ...+.+.+|++...+....... +..+...+..++|+| +|++|+++.
T Consensus 252 ~~~~~~~i~~~spdG~~l~v~~~~~~~---~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 252 KGLYRADVCALTFSGKYMFASSRANKF---ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp SBSEEEEEEEECTTSSEEEEEEEESST---TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred cccccccEEEECCCCCEEEEECCCCCC---CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 244578 99999998776543210 0011378999874332221111 323455677899999 899999987
Q ss_pred cC-CCCCeEEEEEeecc
Q 005315 473 GD-SPRPDISFYSMRTA 488 (702)
Q Consensus 473 ~d-~~~~~v~i~d~~~~ 488 (702)
.+ + .|.+|++...
T Consensus 329 ~~~~---~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEG---WLEIYRWKDE 342 (365)
T ss_dssp SSSC---EEEEEEEETT
T ss_pred cCCC---eEEEEEEchh
Confidence 65 5 8999999653
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=7.5e-16 Score=159.71 Aligned_cols=288 Identities=13% Similarity=0.166 Sum_probs=177.3
Q ss_pred CceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeC----------Cc-eEEeecCcCcceeeeecC------
Q 005315 181 TDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWGGANTFNRLMRYAH------ 243 (702)
Q Consensus 181 ~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~~~~~~~~~~~~~~------ 243 (702)
++.+.+|+. ..++....+..+..+ .++|||||++|++++. ++ |.+||.. +.+.+.++..
T Consensus 30 d~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 30 ESRVHVYDY-TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GCEEEEEET-TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEEEECTTBCC
T ss_pred cCeEEEEEC-CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEEEcCccccc
Confidence 346668886 456666666666555 8999999999998862 33 8899998 7777766642
Q ss_pred --CCeeEEEecCCCCEEEEEcC--CCCCCCcCCCccEEEEEEccCCcEEee-ccCCCcccccCCCCCCCCcccceEEEcC
Q 005315 244 --PQVKLIDFSPGEKYLVTYSS--HEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGG 318 (702)
Q Consensus 244 --~~v~~i~fSpdg~~l~t~s~--d~~~~~~~~~~~~i~vwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~s~ 318 (702)
.....++|||||++|+++.. + +.|.+||+.+++.+.. +..+.. | .+.+.|
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~----------~~v~v~d~~~~~~~~~~i~~~~~--------------~-~v~~~p 160 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPA----------TSIGIVDVAKGDYVEDVTAAAGC--------------W-SVIPQP 160 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSS----------EEEEEEETTTTEEEEEEGGGTTE--------------E-EEEECT
T ss_pred cCCCcceEEECCCCCEEEEECCCCC----------CeEEEEECCCCcEEEEEecCCCc--------------c-eeEEcC
Confidence 23778999999999998863 4 7899999999998887 654321 2 145566
Q ss_pred CCC-cEEEEec-CCeEEEEecCC-ccccccee----eccC-CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 319 GKD-KYFAKLG-KNMISVYETES-FTLIDKKS----LKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 319 ~dg-~~la~~~-d~~i~v~d~~~-~~~~~~~~----~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
++ ..+++.+ +|.+.+|+... ++...... .+.. ....+.++|++..+++ .+.+ ..++.++.....
T Consensus 161 -~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~--~~v~v~d~~~~~ 232 (361)
T 2oiz_A 161 -NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHF-----VSYY--GNVYSADFSGDE 232 (361)
T ss_dssp -TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEE-----EBTT--SEEEEEECSSSS
T ss_pred -CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEE-----EeCC--CeEEEEEecCCC
Confidence 65 3344444 88888888764 33321100 0000 1112233455555554 1122 234555442211
Q ss_pred eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecC-CcceeEEEecCCCCceeEEEEeeCCcEEE
Q 005315 391 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER-DIPIEVLELDNKNDKIIAFAWEPKGHRFA 469 (702)
Q Consensus 391 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 469 (702)
.. ++ ..|.+... ..... . . ......++++|++++++
T Consensus 233 ~~---------------------~~-----------------~~~~~~~~~~~~~~-~-~---p~g~~~~a~~~dg~~ly 269 (361)
T 2oiz_A 233 VK---------------------VD-----------------GPWSLLNDEDKAKN-W-V---PGGYNLVGLHRASGRMY 269 (361)
T ss_dssp CE---------------------EE-----------------EEEESCCHHHHHTT-C-E---ECCSSCEEEETTTTEEE
T ss_pred ce---------------------ec-----------------ccccccCccccccc-c-c---cCCeeEEEEecCCCeEE
Confidence 00 00 00000000 00000 0 0 01112367899988877
Q ss_pred EEEc-CC-------CCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCc--ce
Q 005315 470 VIHG-DS-------PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL--ET 539 (702)
Q Consensus 470 ~~~~-d~-------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~--~~ 539 (702)
++.. ++ ....|.+||+.+.+ .+.++..+....++|+|+|++|++++ .+.|.+||..++ ++
T Consensus 270 v~~~~~~~~~~~~~~~~~v~viD~~t~~------~v~~i~~~~p~~ia~spdg~~l~v~n----~~~v~v~D~~t~~l~~ 339 (361)
T 2oiz_A 270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQ------RVARIPGRDALSMTIDQQRNLMLTLD----GGNVNVYDISQPEPKL 339 (361)
T ss_dssp EEEESSCCTTCTTCCCSEEEEEETTTTE------EEEEEECTTCCEEEEETTTTEEEEEC----SSCEEEEECSSSSCEE
T ss_pred EEEccCCCcccccCCCceEEEEECCCCc------EEEEEecCCeeEEEECCCCCEEEEeC----CCeEEEEECCCCccee
Confidence 7654 21 12379999987654 56666533389999999999998776 389999999999 88
Q ss_pred eeec--ccCceeeeEECCCCC
Q 005315 540 MATA--EHFMATDVEWDPTGR 558 (702)
Q Consensus 540 ~~~~--~~~~i~~~~~spdg~ 558 (702)
+.+. .......++++|+|+
T Consensus 340 ~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 340 LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEETTSCSSEEEEEECCCSC
T ss_pred eEEeccCCCCcEEEEecCCCC
Confidence 8773 345678899999996
No 168
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=1.4e-13 Score=149.99 Aligned_cols=327 Identities=13% Similarity=0.145 Sum_probs=215.0
Q ss_pred CCCcEEEEEeCCc-eEEeecCcCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--CCcEE
Q 005315 213 PLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVM 288 (702)
Q Consensus 213 pdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~--~g~~~ 288 (702)
|.+.++++...++ |.++|.. +++.+.++... .+..+.|||||++|++++.+ +.|.+||+. +++.+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~-t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~d----------g~V~viD~~~~t~~~v 233 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGS-TYEIKTVLDTGYAVHISRLSASGRYLFVIGRD----------GKVNMIDLWMKEPTTV 233 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETT-TCCEEEEEECSSCEEEEEECTTSCEEEEEETT----------SEEEEEETTSSSCCEE
T ss_pred CCceEEEEeCCCCeEEEEECC-CCeEEEEEeCCCCccceEECCCCCEEEEEcCC----------CeEEEEECCCCCCcEe
Confidence 4445555555556 8899999 88888888654 47899999999999999888 899999995 88888
Q ss_pred eeccCCCcccccCCCCCCCCcccceEEEc----CCCCcEEEEec--CCeEEEEecCCcccccceeec-----------cC
Q 005315 289 RDFKGSADEFAVGGTGGVAGVSWPVFRWG----GGKDKYFAKLG--KNMISVYETESFTLIDKKSLK-----------VE 351 (702)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~s----~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~-----------~~ 351 (702)
..+....... .+.|| | ||++++++. +++|.|+|..+++.+...... ..
T Consensus 234 ~~i~~G~~P~--------------~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 234 AEIKIGSEAR--------------SIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp EEEECCSEEE--------------EEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred EEEecCCCCc--------------eeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence 8887655544 68999 9 999998887 899999999888776543321 12
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc-ccceeEEccCCCEEEEEEcccccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-SDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
.+..+..++++..+++. .....+|++++....+.+....+... ....+.|+|+|++++++.....
T Consensus 299 rva~i~~s~~~~~~vv~------~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn-------- 364 (567)
T 1qks_A 299 RVAAILASHYRPEFIVN------VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN-------- 364 (567)
T ss_dssp CEEEEEECSSSSEEEEE------ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT--------
T ss_pred ceEEEEEcCCCCEEEEE------ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCC--------
Confidence 46788889988766653 23446788888765443322221111 1123579999999988775432
Q ss_pred cEEEEEEecCCcceeEEEe---cCCCCceeEEEEeeCCcEEEEEE--cCCCCCeEEEEEeecccC-cCceEEEEEcCCC-
Q 005315 431 GFELFRIKERDIPIEVLEL---DNKNDKIIAFAWEPKGHRFAVIH--GDSPRPDISFYSMRTAQH-AGRVSKLTTLKGK- 503 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l---~~h~~~v~~~~~sp~g~~l~~~~--~d~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~- 503 (702)
.+.++++.... ....+.+ ..|.+.-..+ ++|++..+.+.+ +++ .|.+++..+... ...++.+.++...
T Consensus 365 ~V~ViD~~t~k-l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~---~Vsvid~~~~~~~~~~~kvv~~i~~~g 439 (567)
T 1qks_A 365 KLVVIDTKEGK-LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDD---SVALIGTDPEGHPDNAWKILDSFPALG 439 (567)
T ss_dssp EEEEEETTTTE-EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSS---EEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred eEEEEECCCCc-EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCC---eEEEecCCCCCCccccCEEEEEEecCC
Confidence 14555554322 1222333 1243322223 578765555444 345 899999876321 1123355665532
Q ss_pred -ceeEEEEccCCCEEEEEeccCC----CceEEEEECCCc---------ceeeec-------ccCceeeeEECCCCCEEEE
Q 005315 504 -QANALFWSPSGRFIVLAGLKGF----NGQLEFYNVDEL---------ETMATA-------EHFMATDVEWDPTGRYVAT 562 (702)
Q Consensus 504 -~v~~~~~spdg~~l~~~~~~~~----dg~v~i~d~~~~---------~~~~~~-------~~~~i~~~~~spdg~~l~t 562 (702)
....+..+|+|++|.+....+. .+.|.++|+.+. +.+... ....+..+.|+|+|+++.+
T Consensus 440 ~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 519 (567)
T 1qks_A 440 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWF 519 (567)
T ss_dssp SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEE
T ss_pred CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEE
Confidence 2344788999999998763221 359999999876 223211 1357889999999999887
Q ss_pred EEeecccccccEEEEEecccee
Q 005315 563 AVTSVHEMENGFNIWSFNGKLL 584 (702)
Q Consensus 563 ~s~~~~~~d~~v~iw~~~g~~l 584 (702)
+.......++.|.|+|.....+
T Consensus 520 s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 520 SVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp EEECCTTSCCEEEEEETTTTEE
T ss_pred EeecCCCCCCcEEEEECCCceE
Confidence 7531111268999999775443
No 169
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.71 E-value=1.7e-15 Score=161.03 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=114.4
Q ss_pred cccceEEECCCCcEEEEEeCCceEEeecCcCc----------ce------eeeecCC-CeeEEEecCCCCEEE----EEc
Q 005315 204 WTESFVQWSPLGTYLATVHRQGAAVWGGANTF----------NR------LMRYAHP-QVKLIDFSPGEKYLV----TYS 262 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~----------~~------~~~~~~~-~v~~i~fSpdg~~l~----t~s 262 (702)
..++++++|+++.+|++++.++++||+.. .. .. ...++++ .|.+++|||+|++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dgv~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASGLQIFPTK-NLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHH-HHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCEEEEEEch-HhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 46889999999999999999998888643 11 01 1122333 399999999999999 788
Q ss_pred CCCCCCCcCCCccEEEEEEccCC--------c---EEeeccCCCcccccCCCCCCCCcccceEEEcCCC-CcEEEEec-C
Q 005315 263 SHEPSNPRDANRVVINIFDVRTG--------K---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-K 329 (702)
Q Consensus 263 ~d~~~~~~~~~~~~i~vwd~~~g--------~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d-g~~la~~~-d 329 (702)
.+ +.|+|||+.++ + .++.+.+|...+. +++|+| + +.+|++++ |
T Consensus 116 ~d----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-------------~v~~~p-~~~~~las~s~D 171 (434)
T 2oit_A 116 YG----------SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-------------DMKWNP-TVPSMVAVCLAD 171 (434)
T ss_dssp TE----------EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-------------EEEECS-SCTTEEEEEETT
T ss_pred CC----------ceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-------------EEEECC-CCCCEEEEEECC
Confidence 88 99999998765 1 2455566665553 799999 8 78999888 9
Q ss_pred CeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEE
Q 005315 330 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVS 382 (702)
Q Consensus 330 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 382 (702)
++|++||+.++..+.....|...|.+++|+|+|++|++ ++.++.+++|
T Consensus 172 g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~las-----gs~dg~v~iw 219 (434)
T 2oit_A 172 GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAV-----GKQNGTVVQY 219 (434)
T ss_dssp SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEE-----EETTSCEEEE
T ss_pred CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEE-----EcCCCcEEEE
Confidence 99999999987554444446678999999999999998 6667665544
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.69 E-value=4e-14 Score=146.65 Aligned_cols=312 Identities=11% Similarity=0.049 Sum_probs=184.8
Q ss_pred CCCcEEEEEeC------C-ceEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005315 213 PLGTYLATVHR------Q-GAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 285 (702)
Q Consensus 213 pdg~~lat~~~------~-~i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g 285 (702)
+++++++.... + .|.+||.. +++.+.++.......++|||||++|++++............+.|.+||+.++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~-t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYT-NGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETT-TCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCCEEEEECCCCCccccCeEEEEECC-CCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 46777766542 3 38899998 7777777754432399999999999988631000000011267999999999
Q ss_pred cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec---CCeEEEEecCCcccccceeeccCCeeEEEeCCCC
Q 005315 286 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 362 (702)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~ 362 (702)
+.+..+..+..... ....+ + .+.++| ||++|+++. ++.|.+||+.+++.+... +...+...+.+.|++
T Consensus 92 ~~~~~i~~~~~~~~--~g~~p----~-~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~-i~~~~~~~v~~~p~~ 162 (361)
T 2oiz_A 92 TFEKEISLPPKRVQ--GLNYD----G-LFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDV-TAAAGCWSVIPQPNR 162 (361)
T ss_dssp CEEEEEEECTTBCC--BCCCG----G-GEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEE-GGGTTEEEEEECTTS
T ss_pred cEEEEEEcCccccc--cCCCc----c-eEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEE-ecCCCcceeEEcCCC
Confidence 98887764321100 00000 1 589999 999998775 578999999988765430 233344445566765
Q ss_pred C-eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCC
Q 005315 363 P-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD 441 (702)
Q Consensus 363 ~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 441 (702)
. .++. .+.++...++.+ ..+|+........ .+
T Consensus 163 ~~~~~~-----~~~dg~~~~v~~-----------------------~~~g~~~~~~~~~------------~~------- 195 (361)
T 2oiz_A 163 PRSFMT-----ICGDGGLLTINL-----------------------GEDGKVASQSRSK------------QM------- 195 (361)
T ss_dssp SSEEEE-----EETTSSEEEEEE-----------------------CTTSSEEEEEECC------------CC-------
T ss_pred CeeEEE-----ECCCCcEEEEEE-----------------------CCCCcEeeecccc------------ce-------
Confidence 3 3332 112322222111 1111111000000 00
Q ss_pred cceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--C----------CceeEEE
Q 005315 442 IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--G----------KQANALF 509 (702)
Q Consensus 442 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~----------~~v~~~~ 509 (702)
+..+..+ ..+.++|++..+++.+.++ .|.++|+..... ..+..+. . .....++
T Consensus 196 -------~~~~~~~-~~~~~~~~g~~~~~~~~~~---~v~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~p~g~~~~a 260 (361)
T 2oiz_A 196 -------FSVKDDP-IFIAPALDKDKAHFVSYYG---NVYSADFSGDEV----KVDGPWSLLNDEDKAKNWVPGGYNLVG 260 (361)
T ss_dssp -------SCTTTSC-BCSCCEECSSEEEEEBTTS---EEEEEECSSSSC----EEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred -------EcCCCCc-eEEEecccCCEEEEEeCCC---eEEEEEecCCCc----eecccccccCccccccccccCCeeEEE
Confidence 0011111 1233467787777777666 888998854321 1222211 1 1122379
Q ss_pred EccCCCEEEEEec--c------CCCceEEEEECCCcceeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEec-
Q 005315 510 WSPSGRFIVLAGL--K------GFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN- 580 (702)
Q Consensus 510 ~spdg~~l~~~~~--~------~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~- 580 (702)
++|+|+.++++.. + +..+.|.+||+.+++.+.+.....+.+++|+|||++|++++ .+.|.+||..
T Consensus 261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n------~~~v~v~D~~t 334 (361)
T 2oiz_A 261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLD------GGNVNVYDISQ 334 (361)
T ss_dssp EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEEC------SSCEEEEECSS
T ss_pred EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeC------CCeEEEEECCC
Confidence 9999998887643 0 01358999999999988764332289999999999887654 3899999987
Q ss_pred c--ceeeee--ccccEeeEEEeeCCC
Q 005315 581 G--KLLYRT--LKDHFFQFLWRPRPP 602 (702)
Q Consensus 581 g--~~l~~~--~~~~i~~~~w~p~~~ 602 (702)
+ +.+... .......+.++|+|.
T Consensus 335 ~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 335 PEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CcceeeEEeccCCCCcEEEEecCCCC
Confidence 4 455553 235678899999986
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=4.1e-13 Score=146.27 Aligned_cols=350 Identities=9% Similarity=0.027 Sum_probs=214.6
Q ss_pred cccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecC-cCcceeeeec
Q 005315 165 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA-NTFNRLMRYA 242 (702)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~-~~~~~~~~~~ 242 (702)
|..|+ +...|++..+++.+.+++. .+++.+..+.... ...++.|||||++|++++.++ |.+||.. .+.+.+.++.
T Consensus 161 ~~~d~-~~~~~V~~~~~~~V~viD~-~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~ 237 (567)
T 1qks_A 161 NDWDL-ENLFSVTLRDAGQIALIDG-STYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK 237 (567)
T ss_dssp SCCCG-GGEEEEEETTTTEEEEEET-TTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred cccCC-CceEEEEeCCCCeEEEEEC-CCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence 34444 2334455555666668887 4556555554332 455899999999999999887 8899983 2566666665
Q ss_pred CC-CeeEEEec----CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEc
Q 005315 243 HP-QVKLIDFS----PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 317 (702)
Q Consensus 243 ~~-~v~~i~fS----pdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s 317 (702)
.. ....++|| |||+++++++..+ ++|.|+|..+.+.+..+......+. ............+..|
T Consensus 238 ~G~~P~~ia~s~~~~pDGk~l~v~n~~~---------~~v~ViD~~t~~~~~~i~~~~~~~~--~~~~~p~~rva~i~~s 306 (567)
T 1qks_A 238 IGSEARSIETSKMEGWEDKYAIAGAYWP---------PQYVIMDGETLEPKKIQSTRGMTYD--EQEYHPEPRVAAILAS 306 (567)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEET---------TEEEEEETTTCCEEEEEECCEECTT--TCCEESCCCEEEEEEC
T ss_pred cCCCCceeEEccccCCCCCEEEEEEccC---------CeEEEEECCCCcEEEEEeccccccc--cccccCCCceEEEEEc
Confidence 43 47899999 7999998887652 7899999999998887764321110 0000000001146778
Q ss_pred CCCCcEEE-Eec-CCeEEEEecCCcccccceeecc-CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 318 GGKDKYFA-KLG-KNMISVYETESFTLIDKKSLKV-ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 318 ~~dg~~la-~~~-d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
+ ++..++ ... .|.|.++|..+...+....+.. ....++.|+|+|+++++. .....+|.+++..+.+.+..
T Consensus 307 ~-~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va------~~~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 307 H-YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA------ANARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp S-SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE------EGGGTEEEEEETTTTEEEEE
T ss_pred C-CCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE------eCCCCeEEEEECCCCcEEEE
Confidence 8 766444 334 7999999987654322222222 236788999999988762 23455788899988776554
Q ss_pred eee-ccc----ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCC------cceeEEEecCCCCceeEEEEee
Q 005315 395 KNL-FSV----SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD------IPIEVLELDNKNDKIIAFAWEP 463 (702)
Q Consensus 395 ~~~-~~~----~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~~l~~h~~~v~~~~~sp 463 (702)
... ... .... .++|++..+.+...-+. ..+.+++....+ ..+..+.. ....-..+..+|
T Consensus 380 i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~-------~~Vsvid~~~~~~~~~~~kvv~~i~~--~g~g~~~i~~~p 449 (567)
T 1qks_A 380 EDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGD-------DSVALIGTDPEGHPDNAWKILDSFPA--LGGGSLFIKTHP 449 (567)
T ss_dssp EECSSSSBCCTTCEE-EEETTTEEEEEEEBSSS-------SEEEEEECCTTTCTTTBTSEEEEEEC--SCSCCCCEECCT
T ss_pred EeccCcCCCCcccee-eECCCCCcEEEeCCCCC-------CeEEEecCCCCCCccccCEEEEEEec--CCCCCEEEEeCC
Confidence 433 211 1122 24777666655442111 125666665422 11222333 122224467899
Q ss_pred CCcEEEEEEcCCC----CCeEEEEEeecc--cCcCce-EEEEE-----c--CCCceeEEEEccCCCEEEEEecc--CCCc
Q 005315 464 KGHRFAVIHGDSP----RPDISFYSMRTA--QHAGRV-SKLTT-----L--KGKQANALFWSPSGRFIVLAGLK--GFNG 527 (702)
Q Consensus 464 ~g~~l~~~~~d~~----~~~v~i~d~~~~--~~~~~~-~~~~~-----~--~~~~v~~~~~spdg~~l~~~~~~--~~dg 527 (702)
+++++.+...-++ ...|.+||+.+. .+.... ..+.. + .+..+.++.|+|+|+++.++... ..++
T Consensus 450 ~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~ 529 (567)
T 1qks_A 450 NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQES 529 (567)
T ss_dssp TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCC
T ss_pred CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCC
Confidence 9999988764222 238999999765 111111 22211 1 14468899999999998887431 2378
Q ss_pred eEEEEECCCcceeeeccc
Q 005315 528 QLEFYNVDELETMATAEH 545 (702)
Q Consensus 528 ~v~i~d~~~~~~~~~~~~ 545 (702)
.|.++|..+++++.....
T Consensus 530 ~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 530 ALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEEEETTTTEEEEEECC
T ss_pred cEEEEECCCceEEEEeCC
Confidence 999999999988876554
No 172
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.65 E-value=1.3e-14 Score=154.22 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=117.4
Q ss_pred CCcccceEEECCCCcEEE----EEeCCc-eEEeecCcCc--------ce---eeee-cC-CCeeEEEecCC-CCEEEEEc
Q 005315 202 SYWTESFVQWSPLGTYLA----TVHRQG-AAVWGGANTF--------NR---LMRY-AH-PQVKLIDFSPG-EKYLVTYS 262 (702)
Q Consensus 202 ~~~~v~~v~~Spdg~~la----t~~~~~-i~iw~~~~~~--------~~---~~~~-~~-~~v~~i~fSpd-g~~l~t~s 262 (702)
+...|++++|||+|++|| +++.++ |+|||+. +. +. +..+ .| ..|.+++|+|+ +.+|++++
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVR-TFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHH-HHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcc-ccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 456799999999999999 677777 8899987 43 11 2222 23 35999999998 89999999
Q ss_pred CCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcc
Q 005315 263 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 341 (702)
Q Consensus 263 ~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~ 341 (702)
.| ++|++||++++..+....+|...+. +++|+| +|++|++++ |+.|++||+. +.
T Consensus 170 ~D----------g~v~iwD~~~~~~~~~~~~~~~~v~-------------~v~wsp-dg~~lasgs~dg~v~iwd~~-~~ 224 (434)
T 2oit_A 170 AD----------GSIAVLQVTETVKVCATLPSTVAVT-------------SVCWSP-KGKQLAVGKQNGTVVQYLPT-LQ 224 (434)
T ss_dssp TT----------SCEEEEEESSSEEEEEEECGGGCEE-------------EEEECT-TSSCEEEEETTSCEEEECTT-CC
T ss_pred CC----------CeEEEEEcCCCcceeeccCCCCcee-------------EEEEcC-CCCEEEEEcCCCcEEEEccC-Cc
Confidence 99 9999999999877666666655543 799999 999999999 9999999988 33
Q ss_pred cccceeec-------cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 342 LIDKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 342 ~~~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
.......+ ...|.+++|++++.+++++....+.-.....+.+|++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 225 EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 32222111 1268999999999888765443211122234566666543
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=5.8e-14 Score=158.58 Aligned_cols=259 Identities=10% Similarity=-0.039 Sum_probs=158.0
Q ss_pred CceEEEecCCCCCCCcccccCCCcccc---------eEEEC--CCCcE-EEEEeCCc--eEEeecC----cCcceeeeec
Q 005315 181 TDTEVLWNDARHLKPEPVYKRSYWTES---------FVQWS--PLGTY-LATVHRQG--AAVWGGA----NTFNRLMRYA 242 (702)
Q Consensus 181 ~~~~~~w~~~~~~~~~~~~~~~~~~v~---------~v~~S--pdg~~-lat~~~~~--i~iw~~~----~~~~~~~~~~ 242 (702)
++...+|.. ........+..|...+. .+.|+ |||++ ||+++... |.+|+.. +....+....
T Consensus 46 ~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~ 124 (662)
T 3azo_A 46 AGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS 124 (662)
T ss_dssp TTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC
T ss_pred CCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc
Confidence 455668875 23344555666666666 66676 99999 88877644 5555554 1222222221
Q ss_pred ---CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC------CcEEeecc-CCCcccccCCCCCCCCccc
Q 005315 243 ---HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT------GKVMRDFK-GSADEFAVGGTGGVAGVSW 311 (702)
Q Consensus 243 ---~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~------g~~~~~~~-~~~~~~~~~~~~~~~~~~w 311 (702)
+. .+.+++|||||++|++++.+............|++||+.+ ++.. .+. .+...+.
T Consensus 125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~------------ 191 (662)
T 3azo_A 125 AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVT------------ 191 (662)
T ss_dssp CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEEC------------
T ss_pred cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCccc------------
Confidence 23 4889999999999998886511101112225899999977 5543 443 3322221
Q ss_pred ceEEEcCCCCcEEEEec-C--------CeEEEEecC-Cc---ccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCC
Q 005315 312 PVFRWGGGKDKYFAKLG-K--------NMISVYETE-SF---TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQP 378 (702)
Q Consensus 312 ~~~~~s~~dg~~la~~~-d--------~~i~v~d~~-~~---~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 378 (702)
.++||| ||++|+..+ + ..|.+|++. ++ ........+...+..+.|+|||+++++ +..++.
T Consensus 192 -~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~-----~~~~~~ 264 (662)
T 3azo_A 192 -GPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVA-----TDRTGW 264 (662)
T ss_dssp -CCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEE-----ECTTSS
T ss_pred -CceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEE-----ECCCCC
Confidence 579999 999998776 4 379999998 45 222111122456899999999995544 445566
Q ss_pred cEEEEEecCCcceeeeeeec--------ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005315 379 ARVSLVQIPSKEELRQKNLF--------SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 450 (702)
Q Consensus 379 ~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 450 (702)
.+||.++....+........ ......+.|+++|+.+++... +. ..||.++..+... ..+.
T Consensus 265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~---------~~l~~~d~~~~~~--~~l~ 332 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA---------AVLGILDPESGEL--VDAA 332 (662)
T ss_dssp CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS---------CEEEEEETTTTEE--EECC
T ss_pred eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc---------cEEEEEECCCCcE--EEec
Confidence 78999987554422211110 011234677888888877665 44 6888887654433 4455
Q ss_pred CCCCceeEEEEeeCCcEEEEEEc
Q 005315 451 NKNDKIIAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 451 ~h~~~v~~~~~sp~g~~l~~~~~ 473 (702)
.|...+..+ |+++++.+++.+.
T Consensus 333 ~~~~~~~~~-~s~~~~~~~~~~~ 354 (662)
T 3azo_A 333 GPWTEWAAT-LTVSGTRAVGVAA 354 (662)
T ss_dssp SSCCEEEEE-EEEETTEEEEEEE
T ss_pred CCCCeEEEE-EecCCCEEEEEEc
Confidence 666667665 2666766555443
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=7.5e-14 Score=144.01 Aligned_cols=281 Identities=10% Similarity=0.092 Sum_probs=169.9
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 322 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~ 322 (702)
...+..++| ||++|+....... ...+...+.|++||+.+++... + ..+. .++||| ||+
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~-l----~~~~-------------~~~~Sp-Dg~ 71 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKAN-LKDNKYENTIVIENLKNNARRF-I----ENAT-------------MPRISP-DGK 71 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEE-TTTTEEEEEEEEEETTTCCEEE-E----ESCE-------------EEEECT-TSS
T ss_pred eEEcccceE--CCcEEEEEEeecC-cccCCccceEEEEeCCCCceEE-c----ccCC-------------CeEECC-CCC
Confidence 344777888 9999887643200 0011122689999998887543 3 1111 679999 999
Q ss_pred EEEEec-C---Ce--EEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCC---------------CC-----C
Q 005315 323 YFAKLG-K---NM--ISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELG---------------GG-----N 376 (702)
Q Consensus 323 ~la~~~-d---~~--i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~---------------~~-----~ 376 (702)
+||+.+ + +. |.+|++.+++........ . +..++|+|+|+.|++...... .+ .
T Consensus 72 ~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 72 KIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------
T ss_pred EEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 999887 2 33 777788776544322222 2 889999999999998542100 00 1
Q ss_pred CCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005315 377 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 456 (702)
Q Consensus 377 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 456 (702)
....|+++++...+.+..... . ....+.|+|+| .+++...+.... .......||.++ .+ ... .+..+ ..+
T Consensus 150 ~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~--~~~~~~~l~~~d-~~-~~~--~l~~~-~~~ 219 (347)
T 2gop_A 150 EKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIP--QYFKFWDIYIWE-DG-KEE--KMFEK-VSF 219 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSC--CSSCCEEEEEEE-TT-EEE--EEEEE-ESE
T ss_pred ccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccc--cccccccEEEeC-CC-ceE--EeccC-cce
Confidence 246789999877655233332 3 55677899999 555543321100 000134677777 32 222 23233 344
Q ss_pred eEEEEeeCCcEEEEEEcCCC-----CCeEEEEEeecccCcCceEEEEEcCC--CceeE-EEEccCCCEEEEEeccCCCce
Q 005315 457 IAFAWEPKGHRFAVIHGDSP-----RPDISFYSMRTAQHAGRVSKLTTLKG--KQANA-LFWSPSGRFIVLAGLKGFNGQ 528 (702)
Q Consensus 457 ~~~~~sp~g~~l~~~~~d~~-----~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~-~~~spdg~~l~~~~~~~~dg~ 528 (702)
.+ ++|+|++|++++.+.. ...|.+|+ ++. ....... ..+.. +.|+ +| ++++++. ++.
T Consensus 220 ~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~------~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~---~~~ 284 (347)
T 2gop_A 220 YA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE------VMGILDEVDRGVGQAKIKD-GK-VYFTLFE---EGS 284 (347)
T ss_dssp EE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC------EEESSTTCCSEEEEEEEET-TE-EEEEEEE---TTE
T ss_pred ee--ECCCCCEEEEEEccccCCccccceEEEEC--CCc------eEeccccCCcccCCccEEc-Cc-EEEEEec---CCc
Confidence 44 4999999998886531 23577776 222 2222222 35665 8999 98 8888777 889
Q ss_pred EEEEECCCcceeee-cccCceeeeEECCCCCEEEEEEeecccccccE-EEEEec
Q 005315 529 LEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGF-NIWSFN 580 (702)
Q Consensus 529 v~i~d~~~~~~~~~-~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v-~iw~~~ 580 (702)
+++| +.+++.... .+...+.+++|+| +.+++++. ++.. .||.++
T Consensus 285 ~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~-----~~~~~~l~~~~ 330 (347)
T 2gop_A 285 VNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKET-----ATRLRELFTWD 330 (347)
T ss_dssp EEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEEC-----SSSCCEEEEES
T ss_pred EEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcC-----CCChHHheEeC
Confidence 9999 875554332 3356788999999 66666666 4443 777765
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=9.7e-14 Score=143.19 Aligned_cols=270 Identities=13% Similarity=0.111 Sum_probs=167.3
Q ss_pred cccceEEECCCCcEEEEEeC---------Cc-eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005315 204 WTESFVQWSPLGTYLATVHR---------QG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~---------~~-i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~ 273 (702)
..+..++| ||++||+... ++ +.+|+.. ++... .+ ..+.++.|||||++|++++.+.. ..
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~-~l--~~~~~~~~SpDg~~la~~~~~~~-----~~ 83 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLK-NNARR-FI--ENATMPRISPDGKKIAFMRANEE-----KK 83 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETT-TCCEE-EE--ESCEEEEECTTSSEEEEEEEETT-----TT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCC-CCceE-Ec--ccCCCeEECCCCCEEEEEEeccC-----CC
Confidence 34667788 9999988641 22 6788988 44432 22 56889999999999998875410 11
Q ss_pred ccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C-----------------------
Q 005315 274 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K----------------------- 329 (702)
Q Consensus 274 ~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d----------------------- 329 (702)
...|++|++.+++.......+. +. .+.||| ||+.|+.++ +
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~~~--~~-------------~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 147 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEAKN--IR-------------SLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFF 147 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEESE--EE-------------EEEECT-TSSEEEEEEECCCC---------CCCC-------
T ss_pred cceEEEEECCCCceEEEEcCCC--cc-------------ceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccc
Confidence 2468999988887655544333 21 689999 999988876 3
Q ss_pred ----CeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCC----C-CcEEEEEecCCcceeeeeeeccc
Q 005315 330 ----NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN----Q-PARVSLVQIPSKEELRQKNLFSV 400 (702)
Q Consensus 330 ----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~----~-~~~i~~~~~~~~~~~~~~~~~~~ 400 (702)
..|.+|++.++..+..... . .+..++|+|+| ++++. ... .+ . ...||.++ +.+. ...... .
T Consensus 148 ~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~-~~~--~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~ 217 (347)
T 2gop_A 148 DGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNV-PHR--EIIPQYFKFWDIYIWE--DGKE-EKMFEK-V 217 (347)
T ss_dssp --CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEE-ECC--CSSCCSSCCEEEEEEE--TTEE-EEEEEE-E
T ss_pred cCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEE-ecc--cccccccccccEEEeC--CCce-EEeccC-c
Confidence 5688999987765233322 2 78899999999 54442 111 11 2 55788888 3322 111111 1
Q ss_pred ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe-cCCCCceeE-EEEeeCCcEEEEEEcCCCCC
Q 005315 401 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL-DNKNDKIIA-FAWEPKGHRFAVIHGDSPRP 478 (702)
Q Consensus 401 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~-~~~sp~g~~l~~~~~d~~~~ 478 (702)
.. ..++|+|++|++.+.+... .......||.++ .+. . ..+ ..|...+.+ +.|+ +| .+++++.++
T Consensus 218 ~~--~~~spdg~~l~~~~~~~~~---~~~~~~~l~~~d-~~~-~--~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~--- 283 (347)
T 2gop_A 218 SF--YAVDSDGERILLYGKPEKK---YMSEHNKLYIYD-GKE-V--MGILDEVDRGVGQAKIKD-GK-VYFTLFEEG--- 283 (347)
T ss_dssp SE--EEEEECSSCEEEEECCSSS---CCCSSCEEEEEC-SSC-E--EESSTTCCSEEEEEEEET-TE-EEEEEEETT---
T ss_pred ce--eeECCCCCEEEEEEccccC---CccccceEEEEC-CCc-e--EeccccCCcccCCccEEc-Cc-EEEEEecCC---
Confidence 22 2349999999888765321 001123555555 221 1 222 345677886 9999 88 777777777
Q ss_pred eEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceE-EEEECC
Q 005315 479 DISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL-EFYNVD 535 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v-~i~d~~ 535 (702)
.++|| +.++. ...+.. ....+.+++|+| .++++++. ++.. .+|.++
T Consensus 284 ~~~l~-~~~g~----~~~~~~-~~~~v~~~~~s~--~~~~~~~~---~~~~~~l~~~~ 330 (347)
T 2gop_A 284 SVNLY-IWDGE----IKPIAK-GRHWIMGFDVDE--IVVYLKET---ATRLRELFTWD 330 (347)
T ss_dssp EEEEE-EESSS----EEEEEC-SSSEEEEEEESS--SEEEEEEC---SSSCCEEEEES
T ss_pred cEEEE-EcCCc----eEEEec-CCCeEEeeeeeC--cEEEEEcC---CCChHHheEeC
Confidence 89999 87321 222222 244688999999 56666654 3332 555554
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.63 E-value=3.3e-14 Score=160.58 Aligned_cols=296 Identities=9% Similarity=-0.035 Sum_probs=174.6
Q ss_pred ccccCCCcccceEEECCCCcEEEEE--eCCc-eEEeecCcCcceeeeecC-CCee---------EEEec--CCCCE-EEE
Q 005315 197 PVYKRSYWTESFVQWSPLGTYLATV--HRQG-AAVWGGANTFNRLMRYAH-PQVK---------LIDFS--PGEKY-LVT 260 (702)
Q Consensus 197 ~~~~~~~~~v~~v~~Spdg~~lat~--~~~~-i~iw~~~~~~~~~~~~~~-~~v~---------~i~fS--pdg~~-l~t 260 (702)
..+.+|...+..++||+++-++++. +.++ ..||.....+.......+ ..+. .+.|+ |||++ |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3467788899999999887777776 3455 668875413322222222 2344 56565 99999 877
Q ss_pred EcCCCCCCCcCCCccEEEEEEcc--C-CcEEeeccC-----CCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C--
Q 005315 261 YSSHEPSNPRDANRVVINIFDVR--T-GKVMRDFKG-----SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K-- 329 (702)
Q Consensus 261 ~s~d~~~~~~~~~~~~i~vwd~~--~-g~~~~~~~~-----~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d-- 329 (702)
.+.. ...|++|++. + +. .+.+.. +.... ..++||| ||++|++++ +
T Consensus 97 ~~~~---------~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~-------------~~~~~sp-Dg~~l~~~~~~~~ 152 (662)
T 3azo_A 97 THFG---------DQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRW-------------ADPVLLP-ERGEVWCMAEEFT 152 (662)
T ss_dssp EBTT---------TCCEEEECTTSTTCCC-CEECSCCCCSTTCEEE-------------EEEEEET-TTTEEEEEEEEEC
T ss_pred EECC---------CCeEEEEcCCCCCCCC-CEeccCCccCCCCccc-------------cCcEECC-CCCEEEEEEeccc
Confidence 6643 1567777764 2 43 444444 22222 1689999 999999887 5
Q ss_pred --------CeEEEEecCC------ccccccee-eccCCeeEEEeCCCCCeEEEEeecCCCCC---CCcEEEEEecC-Cc-
Q 005315 330 --------NMISVYETES------FTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGN---QPARVSLVQIP-SK- 389 (702)
Q Consensus 330 --------~~i~v~d~~~------~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~---~~~~i~~~~~~-~~- 389 (702)
..|.+|++.+ +... ... .+...+..++|||||++|++..... .. ....|+++++. +.
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~--~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDH--PRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECT--TCCTTTCEEEEEEEECTTSC
T ss_pred CCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCC--CCCCCCCcEEEEEEECCCCc
Confidence 5899999987 4432 222 2234577899999999999743211 11 23579999987 44
Q ss_pred --ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc---------eeE
Q 005315 390 --EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK---------IIA 458 (702)
Q Consensus 390 --~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~---------v~~ 458 (702)
+..............+.|+|+|+.+++...++. ..||.++..+... ..+..+... +.+
T Consensus 230 ~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~---------~~l~~~~~~~~~~--~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 230 FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW---------WNLHRVDPATGAA--TQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS---------CEEEEECTTTCCE--EESSCCSSBSSCCCCSTTCCS
T ss_pred ccccEEeCCCCCceEcceEECCCCeEEEEECCCCC---------eEEEEEECCCCce--eecccccccccCccccccCce
Confidence 222211212344556789999994444333322 3677766432222 223222222 467
Q ss_pred EEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC--ceeEEEEccCCCEEEEEeccC-CCceEEEEECC
Q 005315 459 FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKG-FNGQLEFYNVD 535 (702)
Q Consensus 459 ~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~-~dg~v~i~d~~ 535 (702)
++|+|+++.++++.. + .++||.+....+ .+..+..+ .+..+ |+++|+.+++.+.+. ....|+++|+.
T Consensus 299 ~~~~~~~~~~~~~~~-~---~~~l~~~d~~~~-----~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~ 368 (662)
T 3azo_A 299 FAPLANGLIAVVHGK-G---AAVLGILDPESG-----ELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTV 368 (662)
T ss_dssp EEECTTSCEEEEEBS-S---SCEEEEEETTTT-----EEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETT
T ss_pred EeEeCCCEEEEEEEc-C---ccEEEEEECCCC-----cEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECC
Confidence 889999998888776 6 777886543222 34445433 34444 267777655543321 12356777777
Q ss_pred Cccee
Q 005315 536 ELETM 540 (702)
Q Consensus 536 ~~~~~ 540 (702)
+++..
T Consensus 369 ~g~~~ 373 (662)
T 3azo_A 369 TGRAR 373 (662)
T ss_dssp TCCEE
T ss_pred CCceE
Confidence 66543
No 177
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=126.53 Aligned_cols=92 Identities=40% Similarity=0.700 Sum_probs=83.1
Q ss_pred cccccccCCCCcEEEECCCC-CC------ChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhC
Q 005315 49 DDDQEVESGFGNIIVVDNLP-VV------PKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN 120 (702)
Q Consensus 49 ~~~~~~~~~~~~~~~v~~lp-~~------~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~ 120 (702)
+++|..+.+.++.|||+||| .+ +++.+.++|+.+|. ..+.|+ +.+|+++|||||+|.++++|..|+..||
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~ 82 (105)
T 2nlw_A 5 KDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD 82 (105)
T ss_dssp SSCCCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCS
T ss_pred cCCCCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 56677788889999999999 77 56899999999998 578888 3589999999999999999999999999
Q ss_pred CCccCCeeEEEEEeccCccccc
Q 005315 121 GYKLDRAHIFAVNMFDDFDKFM 142 (702)
Q Consensus 121 ~~~~~~~h~~~v~~~~d~~~~~ 142 (702)
|..++++|.++|....++++|.
T Consensus 83 g~~~~g~~~l~V~~a~~~~k~~ 104 (105)
T 2nlw_A 83 GYKLDKQHTFRVNLFTDFDKYM 104 (105)
T ss_dssp SEECSTTCEEEEECSCCCCCCC
T ss_pred CcccCCCceEEEEEcchHhhhc
Confidence 9999999999999999998885
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=2.1e-12 Score=146.79 Aligned_cols=289 Identities=12% Similarity=0.028 Sum_probs=173.7
Q ss_pred CCCcEEEEEeCCc----eEEeec--CcC-cceee---eec--CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005315 213 PLGTYLATVHRQG----AAVWGG--ANT-FNRLM---RYA--HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 279 (702)
Q Consensus 213 pdg~~lat~~~~~----i~iw~~--~~~-~~~~~---~~~--~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v 279 (702)
|+|+++++...++ -.||-. .+. .+.+. .+. +. .+..++|||||++||+++.... .....|++
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G-----~~~~~i~v 155 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASG-----SDWVTIKF 155 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETT-----CSCEEEEE
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCC-----CceEEEEE
Confidence 9999999876442 145543 311 12221 111 21 3789999999999998776410 01138999
Q ss_pred EEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCe----------------EEEEecCCccc
Q 005315 280 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNM----------------ISVYETESFTL 342 (702)
Q Consensus 280 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~----------------i~v~d~~~~~~ 342 (702)
||+.+|+.+.....+.. +. .++||| ||+.|+++. ++. |.+|++.++..
T Consensus 156 ~d~~tg~~~~~~~~~~~-~~-------------~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~ 220 (710)
T 2xdw_A 156 MKVDGAKELPDVLERVK-FS-------------CMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS 220 (710)
T ss_dssp EETTTTEEEEEEEEEEC-SC-------------CEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG
T ss_pred EECCCCCCCcccccCcc-cc-------------eEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc
Confidence 99999987654222111 11 589999 999998877 544 99999987653
Q ss_pred ccceeec----cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC------cc-eeeeeeecccccceeEEccCC
Q 005315 343 IDKKSLK----VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS------KE-ELRQKNLFSVSDCKMYWQSSG 411 (702)
Q Consensus 343 ~~~~~~~----~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~------~~-~~~~~~~~~~~~~~~~~s~~g 411 (702)
....... ...+..+.|||+|++|++..... .+....|+++++.. .. ......... ......|+++|
T Consensus 221 ~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dg 297 (710)
T 2xdw_A 221 EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG--CDPVNRLWYCDLQQESNGITGILKWVKLIDNF-EGEYDYVTNEG 297 (710)
T ss_dssp GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS--SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-SSCEEEEEEET
T ss_pred cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc--CCCccEEEEEECcccccccCCccceEEeeCCC-CcEEEEEeccC
Confidence 2222122 22367899999999998854322 22256888998865 32 122222111 12223589999
Q ss_pred CEEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCC--ceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 412 DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKND--KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 412 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
+.|++.+.... ....|+.++..+... ....+..|.. .+.+++|++++..+++...++ ...|.+|++.++
T Consensus 298 ~~l~~~s~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g-~~~l~~~~~~~g 369 (710)
T 2xdw_A 298 TVFTFKTNRHS-------PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV-KNTLQLHDLATG 369 (710)
T ss_dssp TEEEEEECTTC-------TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT-EEEEEEEETTTC
T ss_pred CEEEEEECCCC-------CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC-EEEEEEEECCCC
Confidence 99988876432 113455444332210 1122334433 688899997776666666665 124556665333
Q ss_pred cCcCceEEEEEcC--CCceeEEEEccCCCEEEEEec-cCCCceEEEEECCCcc
Q 005315 489 QHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL-KGFNGQLEFYNVDELE 538 (702)
Q Consensus 489 ~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~-~~~dg~v~i~d~~~~~ 538 (702)
. .+..+. ...+..++++|+++.+++... ....+.|+.||+.+++
T Consensus 370 ~------~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 370 A------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp C------EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred C------EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2 333333 446788999999987765432 2236899999998766
No 179
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.57 E-value=7.9e-15 Score=119.62 Aligned_cols=75 Identities=29% Similarity=0.472 Sum_probs=70.5
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||+||| .+++++|.++|+.+|+ ..+.|+.|+.+|+++|||||+|.++++|.+|++.|||..++++ .++|..
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr-~l~V~~ 95 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK-TIKVSY 95 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE-EEEEEE
Confidence 6899999999 9999999999999998 5899999999999999999999999999999999999999987 788764
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=1.7e-12 Score=147.57 Aligned_cols=253 Identities=8% Similarity=-0.008 Sum_probs=158.0
Q ss_pred eEEEcCCCCcEEEEec--CC----eEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCC-----------
Q 005315 313 VFRWGGGKDKYFAKLG--KN----MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG----------- 375 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~--d~----~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~----------- 375 (702)
.++||| ||++||.+. .| .|++||+.+++.+... .....+..++|+|||+.|++..... .
T Consensus 129 ~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~~~~~~~~wspDg~~l~~~~~~~--~~~~~~~~~~~~ 204 (710)
T 2xdw_A 129 GYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKFSCMAWTHDGKGMFYNAYPQ--QDGKSDGTETST 204 (710)
T ss_dssp EEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECSCCEEECTTSSEEEEEECCC--CSSCCSSSCCCC
T ss_pred EEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccCcccceEEEEeCCCEEEEEEECC--cccccccccccc
Confidence 689999 999999876 22 8999999988765432 2222367899999999999843222 1
Q ss_pred CCCcEEEEEecCCcce----eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEec------CCccee
Q 005315 376 NQPARVSLVQIPSKEE----LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE------RDIPIE 445 (702)
Q Consensus 376 ~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~ 445 (702)
....+|+++++.+... +............+.|+|+|++|++.+.+... ....+.++++.. .....
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~~~~- 279 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD----PVNRLWYCDLQQESNGITGILKW- 279 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS----SCCEEEEEEGGGSSSSSCSSCCC-
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC----CccEEEEEECcccccccCCccce-
Confidence 1245688898876542 11111112223467899999999998764320 012345555543 21122
Q ss_pred EEEecCCCCceeEEEEeeCCcEEEEEEcCC-CCCeEEEEEeecccCcCceEEEEEcCC-CceeEEEEccCCCEEEEEecc
Q 005315 446 VLELDNKNDKIIAFAWEPKGHRFAVIHGDS-PRPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLK 523 (702)
Q Consensus 446 ~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~-~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~ 523 (702)
..+..+...+.. .|+|+|+.|++.+..+ +...|.+|++.++.. ..+..+..-.. ..+..++|++++.++++...
T Consensus 280 -~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~- 355 (710)
T 2xdw_A 280 -VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH- 355 (710)
T ss_dssp -EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-
T ss_pred -EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcCCEEEEEEEE-
Confidence 334445555544 5899999999888743 244788888865421 01223322222 25778999987777777765
Q ss_pred CCCc--eEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 524 GFNG--QLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 524 ~~dg--~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
++ .|++|++.+++.+.. .+...+..+.++|+++.|+....+ ....+.+++|++.+
T Consensus 356 --~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss-~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 356 --DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTS-FLSPGIIYHCDLTK 414 (710)
T ss_dssp --TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEEC-SSCCCEEEEEETTS
T ss_pred --CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeC-CCCCCEEEEEECCC
Confidence 55 567788866654433 345677889999999877655442 01256788888753
No 181
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=2.6e-15 Score=123.13 Aligned_cols=88 Identities=25% Similarity=0.392 Sum_probs=78.0
Q ss_pred cCCCCcEEEECCCCC-------CChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005315 55 ESGFGNIIVVDNLPV-------VPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 126 (702)
Q Consensus 55 ~~~~~~~~~v~~lp~-------~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 126 (702)
+.+++++|||+|||. ++++.|.++|+.+|. .++.||.|+.||+++|||||+|.++++|.+|++.|||..+++
T Consensus 2 ~~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 2 PLGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp CSCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 356789999999996 455678889998888 589999999999999999999999999999999999999998
Q ss_pred eeEEEEEeccCccccc
Q 005315 127 AHIFAVNMFDDFDKFM 142 (702)
Q Consensus 127 ~h~~~v~~~~d~~~~~ 142 (702)
++.++|....+.++|.
T Consensus 82 ~r~l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 82 KHRLFLYTMKDVERYN 97 (100)
T ss_dssp SCBCEEEESHHHHHHH
T ss_pred CeEEEEEECchhhhhh
Confidence 5599999988877764
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=5.7e-13 Score=151.02 Aligned_cols=286 Identities=11% Similarity=-0.021 Sum_probs=161.7
Q ss_pred ECCCCcEEEEEeCCc----eEEee--cCcC-cceeeeec-----CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005315 211 WSPLGTYLATVHRQG----AAVWG--GANT-FNRLMRYA-----HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 277 (702)
Q Consensus 211 ~Spdg~~lat~~~~~----i~iw~--~~~~-~~~~~~~~-----~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i 277 (702)
.+|+|+++++...++ -.||- ..+. .+.+.... |. .+.+++|||||++||.+..... .....|
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G-----~~~~~i 149 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNA-----ADEAVL 149 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETT-----CSCCEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCC-----CceEEE
Confidence 358999999887543 34554 3312 22232211 22 3889999999999996543310 111689
Q ss_pred EEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCe-------------EEEEecCCcccc
Q 005315 278 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNM-------------ISVYETESFTLI 343 (702)
Q Consensus 278 ~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~-------------i~v~d~~~~~~~ 343 (702)
++||+.+|+.+... +.... ....++||| ||+.|++++ +.. |++|++.++...
T Consensus 150 ~v~dl~tg~~~~~~--~~~~~-----------~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~ 215 (695)
T 2bkl_A 150 HVIDVDSGEWSKVD--VIEGG-----------KYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK 215 (695)
T ss_dssp EEEETTTCCBCSSC--CBSCC-----------TTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG
T ss_pred EEEECCCCCCcCCc--ccCcc-----------cccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh
Confidence 99999998865111 11000 001579999 999998887 554 999998876532
Q ss_pred cceee----ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEc
Q 005315 344 DKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD 419 (702)
Q Consensus 344 ~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 419 (702)
..... +...+..+.|||+|++|++..... .....||+++.+
T Consensus 216 ~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~---~~~~~l~~~~~~-------------------------------- 260 (695)
T 2bkl_A 216 DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG---WSENDVYWKRPG-------------------------------- 260 (695)
T ss_dssp CEEEECCCCCTTCEEEEEECTTSCCEEEEEEET---TTEEEEEEECTT--------------------------------
T ss_pred ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC---CCceEEEEEcCC--------------------------------
Confidence 22211 112466777788877777621110 022233333211
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEE
Q 005315 420 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLT 498 (702)
Q Consensus 420 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~ 498 (702)
+... ..+..+...+....| |+|. |++.+. +.+...|.+|++.++.. ..+..+.
T Consensus 261 ---------------------~~~~--~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~ 314 (695)
T 2bkl_A 261 ---------------------EKDF--RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR-ASWKEIV 314 (695)
T ss_dssp ---------------------CSSC--EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG-GGCEEEE
T ss_pred ---------------------CCce--EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc-cCCeEEe
Confidence 1111 112223444455556 7777 666655 32334889999865431 1122332
Q ss_pred EcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECC-Ccceeee--cc-cCceeeeEECCCCCEEEEEEeeccccccc
Q 005315 499 TLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD-ELETMAT--AE-HFMATDVEWDPTGRYVATAVTSVHEMENG 573 (702)
Q Consensus 499 ~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~-~~~~~~~--~~-~~~i~~~~~spdg~~l~t~s~~~~~~d~~ 573 (702)
.-. ...+..++|+ ++.++++... ++..++|.++ +++.... .+ ...+..++++|+|+.|+....+ ...++.
T Consensus 315 ~~~~~~~l~~~~~~-~~~lv~~~~~---dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss-~~~P~~ 389 (695)
T 2bkl_A 315 PEDSSASLLSVSIV-GGHLSLEYLK---DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS-FTTPRQ 389 (695)
T ss_dssp CCCSSCEEEEEEEE-TTEEEEEEEE---TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEE-TTEEEE
T ss_pred cCCCCCeEEEEEEE-CCEEEEEEEE---CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcC-CCCCCE
Confidence 222 3357778888 6667777666 7776666544 2433332 22 4667889999999877755542 011578
Q ss_pred EEEEEecc
Q 005315 574 FNIWSFNG 581 (702)
Q Consensus 574 v~iw~~~g 581 (702)
+++|++.+
T Consensus 390 v~~~d~~~ 397 (695)
T 2bkl_A 390 IYKTSVST 397 (695)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 88898764
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.54 E-value=3.9e-12 Score=130.27 Aligned_cols=269 Identities=9% Similarity=0.003 Sum_probs=168.2
Q ss_pred cccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005315 204 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 282 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~ 282 (702)
..+.+++|+|++..++..+.++ +.+|... ....+ .-+...+.+++|+|+|+.++++..+ +.|.+||.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~g~l~~~~~~~----------~~i~~~d~ 73 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-PWLEI-SKKGLQLEGLNFDRQGQLFLLDVFE----------GNIFKINP 73 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-EEEEE-ESSCCCEEEEEECTTSCEEEEETTT----------CEEEEECT
T ss_pred cccceeeecCCccceeEEeecccCcccccc-eeEEE-eccCccccCcEECCCCCEEEEECCC----------CEEEEEeC
Confidence 3467888999988887766555 7788433 22211 1133458899999999987788877 88999998
Q ss_pred cCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C----CeEEEEecCCccccccee--eccCCeeE
Q 005315 283 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K----NMISVYETESFTLIDKKS--LKVENVMD 355 (702)
Q Consensus 283 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d----~~i~v~d~~~~~~~~~~~--~~~~~v~~ 355 (702)
.+++....+..+...+. .+.|++ +|+++++.. + +.|.+|+..++....... .....+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~-------------~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 74 ETKEIKRPFVSHKANPA-------------AIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp TTCCEEEEEECSSSSEE-------------EEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred CCCcEEEEeeCCCCCcc-------------eEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 88876554422222221 689999 999877766 4 589999988765431111 12235788
Q ss_pred EEeCCCCCeEEEEeecCCCC----CCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccccc
Q 005315 356 FSWSPTDPIISLFVPELGGG----NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 431 (702)
Q Consensus 356 ~~~sp~~~~la~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 431 (702)
++++|+|++++. ... +....|+.++....+ .
T Consensus 140 i~~d~~g~l~v~-----~~~~~~~~~~~~l~~~~~~~~~----------------------~------------------ 174 (333)
T 2dg1_A 140 MVFDSKGGFYFT-----DFRGYSTNPLGGVYYVSPDFRT----------------------V------------------ 174 (333)
T ss_dssp EEECTTSCEEEE-----ECCCBTTBCCEEEEEECTTSCC----------------------E------------------
T ss_pred eEECCCCCEEEE-----eccccccCCCceEEEEeCCCCE----------------------E------------------
Confidence 999999876664 111 112334433321110 0
Q ss_pred EEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEeecc-cCcCce--EEEEEcCC-Ccee
Q 005315 432 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTA-QHAGRV--SKLTTLKG-KQAN 506 (702)
Q Consensus 432 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~-~~~~~~--~~~~~~~~-~~v~ 506 (702)
..+. .+...+..++|+|+|++++++.. ++ .|.+|++.+. ...... .....+.+ ..+.
T Consensus 175 -------------~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~---~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 236 (333)
T 2dg1_A 175 -------------TPII--QNISVANGIALSTDEKVLWVTETTAN---RLHRIALEDDGVTIQPFGATIPYYFTGHEGPD 236 (333)
T ss_dssp -------------EEEE--EEESSEEEEEECTTSSEEEEEEGGGT---EEEEEEECTTSSSEEEEEEEEEEECCSSSEEE
T ss_pred -------------EEee--cCCCcccceEECCCCCEEEEEeCCCC---eEEEEEecCCCcCcccccceEEEecCCCCCCC
Confidence 0000 00234677899999987766654 45 8999998532 110000 11122222 2567
Q ss_pred EEEEccCCCEEEEEeccCCCceEEEEECCCcceeeec--ccC------ceeeeEECCCCCEEEEEEe
Q 005315 507 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA--EHF------MATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 507 ~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~--~~~------~i~~~~~spdg~~l~t~s~ 565 (702)
.++++++|+++++... ++.|.+||.+ ++.+... ... .+.+++|+|||+.|++++.
T Consensus 237 ~i~~d~~G~l~v~~~~---~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 237 SCCIDSDDNLYVAMYG---QGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp EEEEBTTCCEEEEEET---TTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred ceEECCCCCEEEEEcC---CCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence 8999999997776655 6899999985 4444332 111 5789999999988877766
No 184
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=8.2e-12 Score=129.35 Aligned_cols=283 Identities=8% Similarity=0.072 Sum_probs=167.1
Q ss_pred CCCCceEEEEe-CCc---eEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeC----------Cc-eEEeecCc
Q 005315 169 EKARDQFVIRS-GTD---TEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWGGAN 233 (702)
Q Consensus 169 ~~~~~~~~~~~-~~~---~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~~~~ 233 (702)
+.++..|+... +.. .+.+++. ..++.+..+.....+ .+++||||++|+.+.. ++ |.+||..
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~- 105 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDA-GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV- 105 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEEC-CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC-
Confidence 44544455443 222 3446665 345555455443333 8999999999998862 33 7799998
Q ss_pred CcceeeeecCC---------CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEee-ccCCCcccccCCC
Q 005315 234 TFNRLMRYAHP---------QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGT 303 (702)
Q Consensus 234 ~~~~~~~~~~~---------~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~-~~~~~~~~~~~~~ 303 (702)
+.+.+.++..+ ....+.|||||++|++++... ...|.++| .+++.+.. +....
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~--------~~~v~viD-~t~~~~~~~i~~~~-------- 168 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA--------GPAVGLVV-QGGSSDDQLLSSPT-------- 168 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC--------CCeEEEEE-CCCCEEeEEcCCCc--------
Confidence 77777665432 256899999999999886420 15799999 99998887 65432
Q ss_pred CCCCCcccceEEEcCCCC--cEEEEecCCeEEEEecCCcccccceee---ccC--C-eeEEEeCCCCCeEEEEeecCCCC
Q 005315 304 GGVAGVSWPVFRWGGGKD--KYFAKLGKNMISVYETESFTLIDKKSL---KVE--N-VMDFSWSPTDPIISLFVPELGGG 375 (702)
Q Consensus 304 ~~~~~~~w~~~~~s~~dg--~~la~~~d~~i~v~d~~~~~~~~~~~~---~~~--~-v~~~~~sp~~~~la~~~~~~~~~ 375 (702)
++.+.| ++ .|++.+.+|.+.+++. +++....... ... . .....+.+++..+++ .+.
T Consensus 169 ---------~~~~~~-~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-----~~~ 232 (373)
T 2mad_H 169 ---------CYHIHP-GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW-----PVY 232 (373)
T ss_pred ---------eEEEEe-CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEE-----EcC
Confidence 233444 44 3444444999999999 7765522110 011 1 122345555554444 111
Q ss_pred CCCcEEEEEecCCcce--eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005315 376 NQPARVSLVQIPSKEE--LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 453 (702)
Q Consensus 376 ~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 453 (702)
...++.++...... +....+.........|. .
T Consensus 233 --~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~--------------------------------------------p 266 (373)
T 2mad_H 233 --SGKILQADISAAGATNKAPIDALSGGRKADTWR--------------------------------------------P 266 (373)
T ss_pred --CceEEEEeccCCcceEeeeeeecCCccccccee--------------------------------------------c
Confidence 22455555432211 00000000000000011 2
Q ss_pred CceeEEEEeeCCcEEEEEEcCC-------CCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCC-EEEEEeccC
Q 005315 454 DKIIAFAWEPKGHRFAVIHGDS-------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR-FIVLAGLKG 524 (702)
Q Consensus 454 ~~v~~~~~sp~g~~l~~~~~d~-------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~-~l~~~~~~~ 524 (702)
.....++++|+++++++....+ ..+.|.++|+.+.+ .+.++. ++....++|+|||+ .++++.. .
T Consensus 267 ~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~------vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~-~ 339 (373)
T 2mad_H 267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ------TSSQISLGHDVDAISVAQDGGPDLYALSA-G 339 (373)
T ss_pred CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE------EEEEEECCCCcCeEEECCCCCeEEEEEcC-C
Confidence 2334467889988888765421 12379999986654 556655 34589999999999 6666552 1
Q ss_pred CCceEEEEECCCcceeee
Q 005315 525 FNGQLEFYNVDELETMAT 542 (702)
Q Consensus 525 ~dg~v~i~d~~~~~~~~~ 542 (702)
++.|.+||+.+++.+.+
T Consensus 340 -~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 340 -TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred -CCeEEEEECCCCCEEee
Confidence 78999999999988866
No 185
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=8.2e-13 Score=134.83 Aligned_cols=300 Identities=10% Similarity=0.111 Sum_probs=179.3
Q ss_pred ccCCCCCceEEEEeC----CceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeC----------Cc-eEEee
Q 005315 166 LTDEKARDQFVIRSG----TDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWG 230 (702)
Q Consensus 166 ~~~~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~ 230 (702)
+..|+++..|+...+ .+...+.+. .+.+.+..+.....+ .+++||||++|+.++. ++ |.+||
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~-~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEEC-CCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445677777777664 444445565 455555555443444 3999999998887752 23 88999
Q ss_pred cCcCcceeeeecCC---------CeeEEEecCCCCEEEEEcC--CCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccc
Q 005315 231 GANTFNRLMRYAHP---------QVKLIDFSPGEKYLVTYSS--HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA 299 (702)
Q Consensus 231 ~~~~~~~~~~~~~~---------~v~~i~fSpdg~~l~t~s~--d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~ 299 (702)
.. +.+.+.++..+ ....+.|||||++|+++.. + +.|.|+|+.+++.+.++..+...
T Consensus 116 ~~-t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~----------~~VsVID~~t~~vv~tI~v~g~~-- 182 (386)
T 3sjl_D 116 PV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA----------PAVGVVDLEGKAFKRMLDVPDCY-- 182 (386)
T ss_dssp TT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS----------CEEEEEETTTTEEEEEEECCSEE--
T ss_pred CC-CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC----------CeEEEEECCCCcEEEEEECCCcc--
Confidence 99 88877776422 3678999999999888764 4 68999999999999988654311
Q ss_pred cCCCCCCCCcccceEEEcCCCCcE-EEEecCCeEEEEecCC-cccccceeecc----CCe-eEEEeC-CCCCeEEEEeec
Q 005315 300 VGGTGGVAGVSWPVFRWGGGKDKY-FAKLGKNMISVYETES-FTLIDKKSLKV----ENV-MDFSWS-PTDPIISLFVPE 371 (702)
Q Consensus 300 ~~~~~~~~~~~w~~~~~s~~dg~~-la~~~d~~i~v~d~~~-~~~~~~~~~~~----~~v-~~~~~s-p~~~~la~~~~~ 371 (702)
..+.. ..+. ++.+.||.+.+.++.+ ++......... ..+ ....|. ++|+++..
T Consensus 183 --------------~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v---- 243 (386)
T 3sjl_D 183 --------------HIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP---- 243 (386)
T ss_dssp --------------EEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEE----
T ss_pred --------------eeecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEE----
Confidence 11222 2233 3333377777777654 44321111011 111 123553 56654433
Q ss_pred CCCCCCCcEEEEEecCCcc--eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005315 372 LGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 449 (702)
Q Consensus 372 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 449 (702)
. .+ .+++.++..... .+....++........|.|.
T Consensus 244 -s-~~--g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~--------------------------------------- 280 (386)
T 3sjl_D 244 -T-YT--GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG--------------------------------------- 280 (386)
T ss_dssp -B-TT--SEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC---------------------------------------
T ss_pred -e-CC--CEEEEEECCCCcceeecceeccccccccccccCC---------------------------------------
Confidence 1 22 356666654332 11111111100000012221
Q ss_pred cCCCCceeEEEEeeCCcEEEEEEcC-------CCCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCC-EEEEE
Q 005315 450 DNKNDKIIAFAWEPKGHRFAVIHGD-------SPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR-FIVLA 520 (702)
Q Consensus 450 ~~h~~~v~~~~~sp~g~~l~~~~~d-------~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~-~l~~~ 520 (702)
....++++|+++++++...+ .+.+.|.++|+.+.+ .+.++. ++.++.+++||||+ +|+++
T Consensus 281 -----g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k------v~~~i~vg~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 281 -----GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE------RLAKFEMGHEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp -----SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC------EEEEEEEEEEECEEEECSSSSCEEEEE
T ss_pred -----CcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe------EEEEEECCCCcceEEECCCCCeEEEEE
Confidence 22235567888887776531 122478899987655 555554 34688999999997 66665
Q ss_pred eccCCCceEEEEECCCcceeeeccc-CceeeeEECCC
Q 005315 521 GLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDPT 556 (702)
Q Consensus 521 ~~~~~dg~v~i~d~~~~~~~~~~~~-~~i~~~~~spd 556 (702)
.. . ++.|.++|..+++.+.+... ...+.+.+++|
T Consensus 350 n~-~-~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 350 ST-G-DKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp ET-T-TTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred cC-C-CCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 42 2 78999999999999887544 55567777776
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.53 E-value=2.2e-12 Score=131.85 Aligned_cols=258 Identities=12% Similarity=0.090 Sum_probs=154.3
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCC--------------cCCCccEEEEEEccCCcEEeeccCCC-cccccCCCCCCCCc
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNP--------------RDANRVVINIFDVRTGKVMRDFKGSA-DEFAVGGTGGVAGV 309 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~--------------~~~~~~~i~vwd~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ 309 (702)
.+.+++++|+|+.+++.+.+..-.. .....+.|.+||..+|+.++.+.... ... .
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p--------~-- 94 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLP--------H-- 94 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSE--------E--
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCc--------e--
Confidence 4667777777766665554410000 00011479999998899877664322 111 1
Q ss_pred ccceEEEcCCCCcEEEEec-CCeEEEEecCCcc-cccce---------eeccCCeeEEEeCC-CCCeEEEEeecCCCCCC
Q 005315 310 SWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKK---------SLKVENVMDFSWSP-TDPIISLFVPELGGGNQ 377 (702)
Q Consensus 310 ~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~-~~~~~---------~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~ 377 (702)
.+++++ +|+++++.. ++.|.+|+..... .+... ..+......++++| ++.++++ .+ ..
T Consensus 95 ---gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~-----d~-~~ 164 (329)
T 3fvz_A 95 ---GLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS-----DG-YC 164 (329)
T ss_dssp ---EEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE-----EC-SS
T ss_pred ---EEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE-----eC-CC
Confidence 579999 999877777 8999999976432 22211 12233578899999 6776665 21 12
Q ss_pred CcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCcee
Q 005315 378 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII 457 (702)
Q Consensus 378 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~ 457 (702)
..+|..| +++|..+......+. +.. ...++-..+.
T Consensus 165 ~~~I~~~-----------------------~~~g~~~~~~~~~g~------------------~~~----~~~~~~~~p~ 199 (329)
T 3fvz_A 165 NSRIVQF-----------------------SPSGKFVTQWGEESS------------------GSS----PRPGQFSVPH 199 (329)
T ss_dssp CCEEEEE-----------------------CTTSCEEEEECEECC------------------SSS----CCTTEESCEE
T ss_pred CCeEEEE-----------------------cCCCCEEEEeccCCC------------------CCC----CCCcccCCCc
Confidence 3344443 444444332211100 000 0001123467
Q ss_pred EEEEeeC-CcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC----CCceeEEEEccCCCEEEEEec----cCCCce
Q 005315 458 AFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----GKQANALFWSPSGRFIVLAGL----KGFNGQ 528 (702)
Q Consensus 458 ~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~----~~~dg~ 528 (702)
.++++|+ |..+++...++ .|++|+..++. .+..+. +..+..++|+| |..++..+. +..+..
T Consensus 200 gia~d~~~g~l~v~d~~~~---~I~~~~~~~G~------~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~ 269 (329)
T 3fvz_A 200 SLALVPHLDQLCVADRENG---RIQCFKTDTKE------FVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQ 269 (329)
T ss_dssp EEEEETTTTEEEEEETTTT---EEEEEETTTCC------EEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCC
T ss_pred EEEEECCCCEEEEEECCCC---EEEEEECCCCc------EEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcE
Confidence 8999998 55544444455 89999986443 445542 33578899999 433333221 002568
Q ss_pred EEEEECCCcceeeec-----ccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccc
Q 005315 529 LEFYNVDELETMATA-----EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 582 (702)
Q Consensus 529 v~i~d~~~~~~~~~~-----~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 582 (702)
|.+|++.+++.+... +...+..++++|+|..+++... ++.|++|++.+.
T Consensus 270 v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~-----~~~I~~~~~~~~ 323 (329)
T 3fvz_A 270 GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH-----TNTVWKFTLTEK 323 (329)
T ss_dssp EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESS-----SCCEEEEEEEEC
T ss_pred EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECC-----CCEEEEEeCCcc
Confidence 999999988887763 3356789999999966666555 899999998864
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.50 E-value=1.1e-12 Score=148.85 Aligned_cols=256 Identities=11% Similarity=-0.049 Sum_probs=151.2
Q ss_pred CCCcccceEEECCCCcEEEEEeC-----Cc-eEEeecCcCcceeeeecCCCe--eEEEecCCCCEEEEEcCCCCCCC---
Q 005315 201 RSYWTESFVQWSPLGTYLATVHR-----QG-AAVWGGANTFNRLMRYAHPQV--KLIDFSPGEKYLVTYSSHEPSNP--- 269 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~-----~~-i~iw~~~~~~~~~~~~~~~~v--~~i~fSpdg~~l~t~s~d~~~~~--- 269 (702)
+|.+.+..++|||||++||++.. +. |++||+. +++.+.......+ ..++|||||+.|++++.+.....
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~-tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD-SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT-TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC-CCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 56778999999999999996542 23 8899999 6654411122233 78999999999999987632100
Q ss_pred cCCCccEEEEEEccCCc----EEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CC----eEEEEecCCc
Q 005315 270 RDANRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KN----MISVYETESF 340 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~----~i~v~d~~~~ 340 (702)
.......|++|++.++. ++.....+...+ ..+.||| ||++|+..+ ++ .|.+++..++
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~-------------~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF-------------LQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE-------------EEEEECT-TSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEE-------------EEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 00112469999998876 333332232222 1679999 999998777 44 5666665544
Q ss_pred ccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcce--eeeeeec--ccccceeEEccCCCEEEE
Q 005315 341 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE--LRQKNLF--SVSDCKMYWQSSGDYLAV 416 (702)
Q Consensus 341 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~--~~~~~~~~~s~~g~~l~~ 416 (702)
.. .....+...+....| |+|. +++... . .....+|+.+++.+... ....... ......+.|+ ++..+++
T Consensus 263 ~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~-~--~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~ 335 (695)
T 2bkl_A 263 DF-RLLVKGVGAKYEVHA-WKDR-FYVLTD-E--GAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLE 335 (695)
T ss_dssp SC-EEEEECSSCCEEEEE-ETTE-EEEEEC-T--TCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEE
T ss_pred ce-EEeecCCCceEEEEe-cCCc-EEEEEC-C--CCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEE
Confidence 32 222334445566666 6666 544211 1 22467888888765432 1111111 1112234566 4555555
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCC-CCceeEEEEeeCCcEEEEEEcC-CCCCeEEEEEeeccc
Q 005315 417 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-NDKIIAFAWEPKGHRFAVIHGD-SPRPDISFYSMRTAQ 489 (702)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~~~~~d-~~~~~v~i~d~~~~~ 489 (702)
...++. .+||.++..+... ..+..+ .+.+..++++|+++.+++.... ....+|++||+.++.
T Consensus 336 ~~~dg~---------~~l~~~~~~g~~~--~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 336 YLKDAT---------SEVRVATLKGKPV--RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTE---------EEEEEEETTCCEE--EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEECCE---------EEEEEEeCCCCee--EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 555544 5677766433322 223333 5678889999999887766542 111278899986543
No 188
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.50 E-value=3.3e-14 Score=114.34 Aligned_cols=75 Identities=13% Similarity=0.263 Sum_probs=67.9
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc---ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCc----cCCeeEEE
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE---DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK----LDRAHIFA 131 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~---~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~----~~~~h~~~ 131 (702)
+.|||+||| .+++++|.++|+.+|. .++.++.|+.||++||||||+|.++++|.+|++.|||.. ++++ .+.
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr-~i~ 88 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK-TIG 88 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE-EEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE-EEE
Confidence 489999999 9999999999999985 589999999999999999999999999999999999974 6776 777
Q ss_pred EEec
Q 005315 132 VNMF 135 (702)
Q Consensus 132 v~~~ 135 (702)
|..-
T Consensus 89 V~~A 92 (95)
T 2lkz_A 89 VDFA 92 (95)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7643
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.49 E-value=8.3e-12 Score=127.43 Aligned_cols=274 Identities=10% Similarity=0.041 Sum_probs=165.8
Q ss_pred ceEEeecCcCcceeeeec-------C-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCc
Q 005315 225 GAAVWGGANTFNRLMRYA-------H-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD 296 (702)
Q Consensus 225 ~i~iw~~~~~~~~~~~~~-------~-~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~ 296 (702)
+|.++|.. +++....+. . .....+.+. +++..++...+ +.|.+||..+++.+.++.....
T Consensus 18 ~l~~~d~~-t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~----------~~v~viD~~t~~~~~~i~~~~~ 85 (328)
T 3dsm_A 18 TLSYYDPA-TCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNS----------HVIFAIDINTFKEVGRITGFTS 85 (328)
T ss_dssp EEEEEETT-TTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGG----------TEEEEEETTTCCEEEEEECCSS
T ss_pred eEEEEECC-CCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCC----------CEEEEEECcccEEEEEcCCCCC
Confidence 38899998 666554431 1 126778774 34444555555 7899999999999888865443
Q ss_pred ccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeecc-----CCeeEEEeCCCCCeEEEEee
Q 005315 297 EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVMDFSWSPTDPIISLFVP 370 (702)
Q Consensus 297 ~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~la~~~~ 370 (702)
+. .+++++ +++.+++.. ++.|.+||..++++........ .....+++ ++..|.+
T Consensus 86 p~--------------~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv--- 145 (328)
T 3dsm_A 86 PR--------------YIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYV--- 145 (328)
T ss_dssp EE--------------EEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEE---
T ss_pred Cc--------------EEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEE---
Confidence 33 678989 887666663 8999999999887654332211 02344555 2333332
Q ss_pred cCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005315 371 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 450 (702)
Q Consensus 371 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 450 (702)
+.......|.+++..+.+.+. .+..
T Consensus 146 --~~~~~~~~v~viD~~t~~~~~----------------------------------------------------~i~~- 170 (328)
T 3dsm_A 146 --NCWSYQNRILKIDTETDKVVD----------------------------------------------------ELTI- 170 (328)
T ss_dssp --EECTTCCEEEEEETTTTEEEE----------------------------------------------------EEEC-
T ss_pred --EcCCCCCEEEEEECCCCeEEE----------------------------------------------------EEEc-
Confidence 111112244444443322111 1111
Q ss_pred CCCCceeEEEEeeCCcEEEEEEcCCC-------CCeEEEEEeecccCcCceEEEEE--cC-CCceeEEEEccCCCEEEEE
Q 005315 451 NKNDKIIAFAWEPKGHRFAVIHGDSP-------RPDISFYSMRTAQHAGRVSKLTT--LK-GKQANALFWSPSGRFIVLA 520 (702)
Q Consensus 451 ~h~~~v~~~~~sp~g~~l~~~~~d~~-------~~~v~i~d~~~~~~~~~~~~~~~--~~-~~~v~~~~~spdg~~l~~~ 520 (702)
......++++|+|+.+++...+.. ...|.++|..++. .... +. +...+.++|+|+|++|+++
T Consensus 171 --g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~------v~~~~~~~~g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 171 --GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT------VEKQFKFKLGDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp --SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE------EEEEEECCTTCCCEEEEECTTSCEEEEE
T ss_pred --CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe------EEEEEecCCCCCceeEEEecCCCEEEEE
Confidence 223456778888886665544300 1278889876543 2323 32 3367899999999999887
Q ss_pred eccCCCceEEEEECCCcceeee--cc--cCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeeecc-ccEeeE
Q 005315 521 GLKGFNGQLEFYNVDELETMAT--AE--HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK-DHFFQF 595 (702)
Q Consensus 521 ~~~~~dg~v~i~d~~~~~~~~~--~~--~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~~-~~i~~~ 595 (702)
. +.|.+||..++++... .. ......++++|++..|..+.......++.|.+|+..|+.+..... .....+
T Consensus 243 ~-----~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~~P~~~ 317 (328)
T 3dsm_A 243 N-----NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAF 317 (328)
T ss_dssp S-----SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEESEEEE
T ss_pred c-----cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEeccCcceE
Confidence 4 3899999988776422 11 356788999996555555540000016899999999887776644 334555
Q ss_pred EEe
Q 005315 596 LWR 598 (702)
Q Consensus 596 ~w~ 598 (702)
+|-
T Consensus 318 ~~~ 320 (328)
T 3dsm_A 318 CWK 320 (328)
T ss_dssp EEE
T ss_pred EEe
Confidence 553
No 190
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.49 E-value=8.7e-14 Score=115.72 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=71.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++|+++|+.+|+ .++.|+.|+.||+++|||||+|.+.++|++|++.|||..++++ .+.|..-.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr-~i~V~~a~ 84 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN-IIHAQLDI 84 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe-EEEEEECC
Confidence 5789999999 9999999999999998 5899999999999999999999999999999999999999988 88887644
No 191
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.48 E-value=3.1e-14 Score=114.21 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=67.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccc-c-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhC-CCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIK-E-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN-GYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~-~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~-~~~~~~~h~~~v~~ 134 (702)
+++|||+||| .+++++++++|+.+| + .++.|+.|+.||++||||||+|.++++|.+|++.++ +..++++ .+.|..
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr-~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQ-KVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTE-EEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCE-EEEEEE
Confidence 5799999999 999999999999998 5 589999999999999999999999999999999874 5667776 788763
No 192
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.47 E-value=6.5e-12 Score=130.68 Aligned_cols=303 Identities=9% Similarity=0.005 Sum_probs=176.9
Q ss_pred CCCcEEEEEeC------CceEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc
Q 005315 213 PLGTYLATVHR------QGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK 286 (702)
Q Consensus 213 pdg~~lat~~~------~~i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~ 286 (702)
|++++++.... +.|.+.|.. +.+.+.++....-..+.+||||++|+++.............+.|.++|..+++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~-t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGS-TGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETT-TTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECC-CCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 57776666654 348899999 89988888644322899999999988876310000000001689999999999
Q ss_pred EEeeccCC-CcccccCCCCCCCCcccceEEEcCCCCcEEEEec---CCeEEEEecCCcccccceeeccCCe---------
Q 005315 287 VMRDFKGS-ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENV--------- 353 (702)
Q Consensus 287 ~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~---d~~i~v~d~~~~~~~~~~~~~~~~v--------- 353 (702)
.++.+... ..... ....+. .+.++| ||+++..+. ++.|.++|+.+++.+..... ++.
T Consensus 161 vv~~I~v~g~~r~~--~g~~P~-----~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g~~~~~p~g~~ 230 (426)
T 3c75_H 161 PIADIELPDAPRFL--VGTYQW-----MNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PDCYHIFPASPT 230 (426)
T ss_dssp EEEEEEETTCCCCC--BSCCGG-----GSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSEEEEEEEETT
T ss_pred EEEEEECCCccccc--cCCCcc-----eEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CCceeeccCCCc
Confidence 98887532 00000 000011 579999 999888765 57899999999887754332 221
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecc-cccceeEEccCCCEEEEEEcccccccccccccE
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 432 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 432 (702)
.-+.++++|+++.+ ....+.... ... ..+ .... .....+.+.++|..+++....+. +
T Consensus 231 ~~v~~~~dG~~~~V-----~~~~~~v~~-~~~----~~~---~v~~~p~~~~~~~~~dg~~~~~~s~~g~---------V 288 (426)
T 3c75_H 231 VFYMNCRDGSLARV-----DFADGETKV-TNT----EVF---HTEDELLINHPAFSLRSGRLVWPTYTGK---------I 288 (426)
T ss_dssp EEEEEETTSSEEEE-----ECCTTCCEE-EEC----CCC---SCTTSCBCSCCEECTTTCEEEEEBTTSE---------E
T ss_pred EEEEEcCCCCEEEE-----ECCCCcEEE-Eee----eee---ccCCCceeeEeeecCCCCEEEEEeCCCc---------E
Confidence 12445555555544 111111110 000 000 0000 00112356888888777654332 4
Q ss_pred EEEEEecCCcce-eEEEecC--------CCCceeEEEEeeCCcEEEEEEcCC-------CCCeEEEEEeecccCcCceEE
Q 005315 433 ELFRIKERDIPI-EVLELDN--------KNDKIIAFAWEPKGHRFAVIHGDS-------PRPDISFYSMRTAQHAGRVSK 496 (702)
Q Consensus 433 ~l~~l~~~~~~~-~~~~l~~--------h~~~v~~~~~sp~g~~l~~~~~d~-------~~~~v~i~d~~~~~~~~~~~~ 496 (702)
.+.++......+ ....+.. .......++++|+++++++...++ +.+.|.++|+.+.+ .
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k------v 362 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE------R 362 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC------E
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe------E
Confidence 455543322110 1111100 011222368999998887775321 12379999987655 5
Q ss_pred EEEcCC-CceeEEEEccCCC-EEEEEeccCCCceEEEEECCCcceeeec-ccCceeeeEECCC
Q 005315 497 LTTLKG-KQANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPT 556 (702)
Q Consensus 497 ~~~~~~-~~v~~~~~spdg~-~l~~~~~~~~dg~v~i~d~~~~~~~~~~-~~~~i~~~~~spd 556 (702)
+.++.. .....++|+|||+ +++++... ++.|.++|+.+++.+.+. ..+.-..+..+||
T Consensus 363 v~~I~vg~~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~~ 423 (426)
T 3c75_H 363 INKIELGHEIDSINVSQDAEPLLYALSAG--TQTLHIYDAATGEELRSVDQLGRGPQIITTHD 423 (426)
T ss_dssp EEEEEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEEEECCCSSSCCEEECCC
T ss_pred EEEEECCCCcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCCCEEEEecCCCCCCcEEEcCC
Confidence 666653 3578999999999 78777631 799999999999998774 3444444666664
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=2.3e-11 Score=138.77 Aligned_cols=288 Identities=11% Similarity=0.037 Sum_probs=169.0
Q ss_pred CCCCcEEEEEeCCc----eEEeecC-----cC-cceeee---e--cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005315 212 SPLGTYLATVHRQG----AAVWGGA-----NT-FNRLMR---Y--AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRV 275 (702)
Q Consensus 212 Spdg~~lat~~~~~----i~iw~~~-----~~-~~~~~~---~--~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~ 275 (702)
+|+|+++++...++ ..||-.. +. .+.+.. + .+. .+..++|||||++||+++.+.. ....
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G-----~e~~ 189 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGG-----SDWR 189 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETT-----CSEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCC-----CceE
Confidence 49999999877543 3466543 12 222211 1 121 3789999999999998875411 1115
Q ss_pred EEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CC--------------eEEEEecCCc
Q 005315 276 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KN--------------MISVYETESF 340 (702)
Q Consensus 276 ~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~--------------~i~v~d~~~~ 340 (702)
.|++||+.+|+.+.... +.... ..+.||| | +.|+.+. ++ .|.+|++.++
T Consensus 190 ~i~v~dl~tg~~~~~~~-~~~~~-------------~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~ 253 (741)
T 1yr2_A 190 TVKFVGVADGKPLADEL-KWVKF-------------SGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTP 253 (741)
T ss_dssp EEEEEETTTCCEEEEEE-EEEES-------------CCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSC
T ss_pred EEEEEECCCCCCCCccC-CCcee-------------ccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCC
Confidence 79999999998765321 11111 1579999 9 8888776 43 3888998766
Q ss_pred ccccceeecc----CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc--ceeeeeeecccccceeEEccCCCEE
Q 005315 341 TLIDKKSLKV----ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKNLFSVSDCKMYWQSSGDYL 414 (702)
Q Consensus 341 ~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l 414 (702)
.......... ..+..+.|||||++|++..... .+....|++++.... .............. ..++|+|+.|
T Consensus 254 ~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~~~~dg~~l 330 (741)
T 1yr2_A 254 QSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG--TDPVNTVHVARVTNGKIGPVTALIPDLKAQW-DFVDGVGDQL 330 (741)
T ss_dssp GGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT--TCSCCEEEEEEEETTEECCCEEEECSSSSCE-EEEEEETTEE
T ss_pred chhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc--CCCcceEEEEECCCCCCcccEEecCCCCceE-EEEeccCCEE
Confidence 5322222221 1378899999999998854322 234567888887654 20222211111222 2356899999
Q ss_pred EEEEcccccccccccccEEEEEEecCCc-ceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCc
Q 005315 415 AVKVDRYTKTKKSTYTGFELFRIKERDI-PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR 493 (702)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 493 (702)
++.+.... .+..|+.++..+. ......++.+...+.+++|+ ++..+++...++ ..+||.+... +.
T Consensus 331 ~~~s~~~~-------~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg---~~~l~~~~~~-g~-- 396 (741)
T 1yr2_A 331 WFVSGDGA-------PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDA---KSQVLAFDLD-GK-- 396 (741)
T ss_dssp EEEECTTC-------TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETT---EEEEEEEETT-SC--
T ss_pred EEEECCCC-------CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECC---EEEEEEEeCC-CC--
Confidence 98876532 1134554443321 11112233445567678887 555566666666 5666655421 11
Q ss_pred eEEEEEcC---CCceeEEEEccCCCEEEEEec-cCCCceEEEEECCCcce
Q 005315 494 VSKLTTLK---GKQANALFWSPSGRFIVLAGL-KGFNGQLEFYNVDELET 539 (702)
Q Consensus 494 ~~~~~~~~---~~~v~~~~~spdg~~l~~~~~-~~~dg~v~i~d~~~~~~ 539 (702)
.+..+. ...+..+.++|+|+.|++... ....++|++||+.+++.
T Consensus 397 --~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 397 --PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp --EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred --ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 334343 335788999999987664432 22368999999987653
No 194
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.47 E-value=2e-14 Score=112.87 Aligned_cols=73 Identities=40% Similarity=0.647 Sum_probs=64.6
Q ss_pred CcEEEECCCC-CC------ChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 005315 59 GNIIVVDNLP-VV------PKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 130 (702)
Q Consensus 59 ~~~~~v~~lp-~~------~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~ 130 (702)
++.|||+||| .+ ++++++++|+.+|+ ..+.|| +.+|+++|||||+|.++++|..|++.|||..++++|++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999 77 56999999999998 578888 35899999999999999999999999999999988776
Q ss_pred EEE
Q 005315 131 AVN 133 (702)
Q Consensus 131 ~v~ 133 (702)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 653
No 195
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.47 E-value=3.6e-11 Score=120.06 Aligned_cols=236 Identities=13% Similarity=0.141 Sum_probs=151.5
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEE-cCCCCcE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW-GGGKDKY 323 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-s~~dg~~ 323 (702)
.+.+++++|+|+++++...+ +.|.+||.. ++.+..+....... +.... -..+++ .+ ++.+
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~----------~~i~~~d~~-g~~~~~~~~~~~~~-----~~~~~--p~~i~~~~~-~g~l 91 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNN----------HRIQIFDKE-GRFKFQFGECGKRD-----SQLLY--PNRVAVVRN-SGDI 91 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGG----------TEEEEECTT-SCEEEEECCBSSST-----TCBSS--EEEEEEETT-TTEE
T ss_pred CCceEEECCCCCEEEEECCC----------CEEEEECCC-CcEEEEecccCCCc-----ccccC--ceEEEEEcC-CCeE
Confidence 48899999999988887777 889999975 77776664321000 00000 015788 57 7877
Q ss_pred EEEec--CCeEEEEecCCcccccceee-ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc
Q 005315 324 FAKLG--KNMISVYETESFTLIDKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 400 (702)
Q Consensus 324 la~~~--d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 400 (702)
+++.. ++.|.+|+ .+++.+..... ....+.+++++|+|++++. ... ...|..|
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~-----~~~--~~~i~~~---------------- 147 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVV-----ECK--VMRVIIF---------------- 147 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEE-----ETT--TTEEEEE----------------
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEE-----ECC--CCEEEEE----------------
Confidence 77663 78999999 45554432211 2345788999999886654 222 2234333
Q ss_pred ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeE
Q 005315 401 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 480 (702)
Q Consensus 401 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 480 (702)
+++|..+... ....+...+..++++|+|+.+++...++ .|
T Consensus 148 -------~~~g~~~~~~------------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~---~i 187 (286)
T 1q7f_A 148 -------DQNGNVLHKF------------------------------GCSKHLEFPNGVVVNDKQEIFISDNRAH---CV 187 (286)
T ss_dssp -------CTTSCEEEEE------------------------------ECTTTCSSEEEEEECSSSEEEEEEGGGT---EE
T ss_pred -------cCCCCEEEEe------------------------------CCCCccCCcEEEEECCCCCEEEEECCCC---EE
Confidence 3333322111 0112234678899999998666655566 89
Q ss_pred EEEEeecccCcCceEEEEEcCC----CceeEEEEccCCCEEEEEeccCCCc-eEEEEECCCcceeeec----ccCceeee
Q 005315 481 SFYSMRTAQHAGRVSKLTTLKG----KQANALFWSPSGRFIVLAGLKGFNG-QLEFYNVDELETMATA----EHFMATDV 551 (702)
Q Consensus 481 ~i~d~~~~~~~~~~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~~~dg-~v~i~d~~~~~~~~~~----~~~~i~~~ 551 (702)
.+|+... . .+..+.. .....++++|+|+++++... ++ .|.+|+.. ++.+... ....+.++
T Consensus 188 ~~~~~~g-~------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~---~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 188 KVFNYEG-Q------YLRQIGGEGITNYPIGVGINSNGEILIADNH---NNFNLTIFTQD-GQLISALESKVKHAQCFDV 256 (286)
T ss_dssp EEEETTC-C------EEEEESCTTTSCSEEEEEECTTCCEEEEECS---SSCEEEEECTT-SCEEEEEEESSCCSCEEEE
T ss_pred EEEcCCC-C------EEEEEccCCccCCCcEEEECCCCCEEEEeCC---CCEEEEEECCC-CCEEEEEcccCCCCcceeE
Confidence 9999632 1 3444432 35788999999988777664 55 99999975 4443321 12346789
Q ss_pred EECCCCCEEEEEEeecccccccEEEEEec
Q 005315 552 EWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 552 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
+++|+|+.+++ +. ++.|++|++.
T Consensus 257 ~~~~~g~l~vs-~~-----~~~v~v~~~~ 279 (286)
T 1q7f_A 257 ALMDDGSVVLA-SK-----DYRLYIYRYV 279 (286)
T ss_dssp EEETTTEEEEE-ET-----TTEEEEEECS
T ss_pred EECCCCcEEEE-CC-----CCeEEEEEcc
Confidence 99999986666 56 8999999875
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.46 E-value=2.2e-11 Score=124.29 Aligned_cols=297 Identities=11% Similarity=0.046 Sum_probs=183.9
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec
Q 005315 249 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 328 (702)
Q Consensus 249 i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~ 328 (702)
....|+++.+........ ...+.|.+.|..+++.+..+.....+ .+.+|| ||++++.+.
T Consensus 38 ~~~~pd~~~vyV~~~~~~-----~~~~~V~ViD~~t~~v~~~I~vG~~P---------------~va~sp-DG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHF-----AAVTQQFVIDGEAGRVIGMIDGGFLP---------------NPVVAD-DGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGGG-----CSSEEEEEEETTTTEEEEEEEECSSC---------------EEEECT-TSSCEEEEE
T ss_pred eccCCCCCEEEEEcCccc-----CCCCEEEEEECCCCeEEEEEECCCCC---------------cEEECC-CCCEEEEEc
Confidence 556799988877765200 00168999999999999888654332 479999 999776553
Q ss_pred -----------CCeEEEEecCCcccccceeecc-------CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 329 -----------KNMISVYETESFTLIDKKSLKV-------ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 329 -----------d~~i~v~d~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
++.|.+||..+++.+....... .....+.++|||+++.+ +.......|.+++..+.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyV-----an~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF-----YQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEE-----EECSSSCEEEEEETTTTE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEE-----EEcCCCCeEEEEECCCCc
Confidence 5789999999988776543321 13567999999999887 222334678999999988
Q ss_pred eeeeeeeccc------cc-ceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCcee-EEEEe
Q 005315 391 ELRQKNLFSV------SD-CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII-AFAWE 462 (702)
Q Consensus 391 ~~~~~~~~~~------~~-~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~-~~~~s 462 (702)
.+........ .. .-+..+++|+.+.+......+ + + ..... .+.....++. ...|.
T Consensus 172 vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~--------v-~-~~~~~-------~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 172 FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT--------P-E-ITHTE-------VFHPEDEFLINHPAYS 234 (386)
T ss_dssp EEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC--------C-E-EEECC-------CCSCTTSCBCSCCEEE
T ss_pred EEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCe--------E-E-Eeecc-------eeccccccccccceeE
Confidence 7665543211 10 001334555554444332110 0 0 00000 0000012222 24664
Q ss_pred -eCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC------------CCceeEEEEccCCCEEEEEecc------
Q 005315 463 -PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK------------GKQANALFWSPSGRFIVLAGLK------ 523 (702)
Q Consensus 463 -p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~------------~~~v~~~~~spdg~~l~~~~~~------ 523 (702)
++|+++ +.+.++ .|+++|+.+.... .+..+. ......++++|+++.++++...
T Consensus 235 ~~dG~~~-~vs~~g---~V~v~d~~~~~~~----v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~h 306 (386)
T 3sjl_D 235 QKAGRLV-WPTYTG---KIHQIDLSSGDAK----FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH 306 (386)
T ss_dssp TTTTEEE-EEBTTS---EEEEEECTTSSCE----ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred cCCCcEE-EEeCCC---EEEEEECCCCcce----eecceeccccccccccccCCCcceeeECCCCCeEEEEecccccccc
Confidence 577544 455566 8999998543311 111111 1123457889999998887531
Q ss_pred -CCCceEEEEECCCcceeeeccc-CceeeeEECCCCC-EEEEEEeecccccccEEEEEec-cceeeeecc-ccEeeEEEe
Q 005315 524 -GFNGQLEFYNVDELETMATAEH-FMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFN-GKLLYRTLK-DHFFQFLWR 598 (702)
Q Consensus 524 -~~dg~v~i~d~~~~~~~~~~~~-~~i~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~~~-~~i~~~~w~ 598 (702)
...+.|.++|+.+++++..... ..+..++++|||+ +|+++... ++.|.++|.. ++.+..... ++..++.++
T Consensus 307 k~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~----~~~VsViD~~t~k~~~~i~~~~~p~~l~~s 382 (386)
T 3sjl_D 307 KTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG----DKTLYIHDAESGEELRSVNQLGHGPQVITT 382 (386)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT----TTEEEEEETTTCCEEEEECCCCSSCCEEEE
T ss_pred CCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC----CCeEEEEECCCCcEEEEecCCCCCceeEEC
Confidence 0136899999999999887544 4677999999998 56655442 7899999986 555555533 667778888
Q ss_pred eC
Q 005315 599 PR 600 (702)
Q Consensus 599 p~ 600 (702)
+|
T Consensus 383 ~d 384 (386)
T 3sjl_D 383 AD 384 (386)
T ss_dssp CC
T ss_pred Cc
Confidence 76
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.45 E-value=3.8e-11 Score=120.65 Aligned_cols=243 Identities=7% Similarity=-0.026 Sum_probs=146.2
Q ss_pred CCcccceEEECCCCc-EEEEEeCCc-eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005315 202 SYWTESFVQWSPLGT-YLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 279 (702)
Q Consensus 202 ~~~~v~~v~~Spdg~-~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v 279 (702)
+.....+++|+|+|+ +++++..++ |.+|+.. +.......+...+.+++|+|+|+.+++...+ +.|.+
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~----------~~i~~ 94 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD-GQLSPEMHPSHHQNGHCLNKQGHLIACSHGL----------RRLER 94 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT-SCEEEEESSCSSEEEEEECTTCCEEEEETTT----------TEEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECC-CCeEEEECCCCCcceeeECCCCcEEEEecCC----------CeEEE
Confidence 334456899999998 566665555 8899998 4422222233458999999999988887776 78999
Q ss_pred EEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe----c--------------CCeEEEEecCCcc
Q 005315 280 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL----G--------------KNMISVYETESFT 341 (702)
Q Consensus 280 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~----~--------------d~~i~v~d~~~~~ 341 (702)
||..+|+............ ... ...++++| +|+++++. . .+.|..++.. +.
T Consensus 95 ~d~~~g~~~~~~~~~~~~~-------~~~--~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKK-------LNS--PNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT 163 (296)
T ss_dssp ECSTTCCEEEEECEETTEE-------CCC--CCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC
T ss_pred EcCCCCcEEEEeeccCCCC-------CCC--CCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC
Confidence 9988887644332111110 000 11578999 99988862 2 2345555544 32
Q ss_pred cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccc
Q 005315 342 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 421 (702)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 421 (702)
. ............++|+|+++.+++ ......|+.|+... +|....
T Consensus 164 ~-~~~~~~~~~~~gi~~s~dg~~lv~-------~~~~~~i~~~~~~~---------------------~g~~~~------ 208 (296)
T 3e5z_A 164 L-SAPIRDRVKPNGLAFLPSGNLLVS-------DTGDNATHRYCLNA---------------------RGETEY------ 208 (296)
T ss_dssp E-EEEECCCSSEEEEEECTTSCEEEE-------ETTTTEEEEEEECS---------------------SSCEEE------
T ss_pred E-EEeecCCCCCccEEECCCCCEEEE-------eCCCCeEEEEEECC---------------------CCcCcC------
Confidence 2 122223344678888888887743 22223455554321 111000
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE--
Q 005315 422 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-- 499 (702)
Q Consensus 422 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-- 499 (702)
...++ ..+...+..++++++|+.+++. ++ .|.+|+.. +. .+..
T Consensus 209 ---------~~~~~--------------~~~~~~p~~i~~d~~G~l~v~~--~~---~v~~~~~~-g~------~~~~~~ 253 (296)
T 3e5z_A 209 ---------QGVHF--------------TVEPGKTDGLRVDAGGLIWASA--GD---GVHVLTPD-GD------ELGRVL 253 (296)
T ss_dssp ---------EEEEE--------------CCSSSCCCSEEEBTTSCEEEEE--TT---EEEEECTT-SC------EEEEEE
T ss_pred ---------CCeEe--------------eCCCCCCCeEEECCCCCEEEEc--CC---eEEEECCC-CC------EEEEEE
Confidence 00011 1124455678999999866655 45 79999974 22 3333
Q ss_pred cCCCceeEEEE-ccCCCEEEEEeccCCCceEEEEECCCcceee
Q 005315 500 LKGKQANALFW-SPSGRFIVLAGLKGFNGQLEFYNVDELETMA 541 (702)
Q Consensus 500 ~~~~~v~~~~~-spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~ 541 (702)
.+.. +++++| +|+++.|++++. +.|.-++..+.++-.
T Consensus 254 ~~~~-~~~~~f~~~d~~~L~v~t~----~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 254 TPQT-TSNLCFGGPEGRTLYMTVS----TEFWSIETNVRGLEH 291 (296)
T ss_dssp CSSC-CCEEEEESTTSCEEEEEET----TEEEEEECSCCBCCC
T ss_pred CCCC-ceeEEEECCCCCEEEEEcC----CeEEEEEcccccccc
Confidence 3334 888999 689999998884 456667777655543
No 198
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.45 E-value=3.7e-11 Score=119.98 Aligned_cols=236 Identities=11% Similarity=0.127 Sum_probs=149.6
Q ss_pred CCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecC--------CCeeEEEe-cCCCCEEEEEcC-CCCCCC
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAH--------PQVKLIDF-SPGEKYLVTYSS-HEPSNP 269 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~--------~~v~~i~f-Spdg~~l~t~s~-d~~~~~ 269 (702)
++.....+++++|+|+++++...++ |.+|+.. . ..+..+.. ..+..+++ .++|+.+++... +
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~----- 99 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-G-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT----- 99 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-S-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-----
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-C-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC-----
Confidence 4556678999999999888877666 8899987 2 33333321 24789999 578877776643 5
Q ss_pred cCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCccccccee-
Q 005315 270 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS- 347 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~- 347 (702)
+.|.+|| .+++.+..+....... ...+++++ +|+++++.. ++.|.+|+.. ++.+....
T Consensus 100 -----~~i~~~d-~~g~~~~~~~~~~~~~------------~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 159 (286)
T 1q7f_A 100 -----HQIQIYN-QYGQFVRKFGATILQH------------PRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGC 159 (286)
T ss_dssp -----CEEEEEC-TTSCEEEEECTTTCSC------------EEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred -----CEEEEEC-CCCcEEEEecCccCCC------------ceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCC
Confidence 6899999 6888877764322110 01689999 999877766 8899999964 33332221
Q ss_pred -eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccc
Q 005315 348 -LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 426 (702)
Q Consensus 348 -~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 426 (702)
.+...+..++++|+|+++++ ......|..|+ ++|..+...
T Consensus 160 ~~~~~~p~~i~~~~~g~l~v~-------~~~~~~i~~~~-----------------------~~g~~~~~~--------- 200 (286)
T 1q7f_A 160 SKHLEFPNGVVVNDKQEIFIS-------DNRAHCVKVFN-----------------------YEGQYLRQI--------- 200 (286)
T ss_dssp TTTCSSEEEEEECSSSEEEEE-------EGGGTEEEEEE-----------------------TTCCEEEEE---------
T ss_pred CCccCCcEEEEECCCCCEEEE-------ECCCCEEEEEc-----------------------CCCCEEEEE---------
Confidence 12335778888888875554 11122333332 233221110
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC----C
Q 005315 427 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----G 502 (702)
Q Consensus 427 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~ 502 (702)
...++...+..++++|+|+.+++...++ ..|.+|+.. +. .+..+. .
T Consensus 201 ---------------------~~~g~~~~p~~i~~d~~G~l~v~~~~~~--~~i~~~~~~-g~------~~~~~~~~~~~ 250 (286)
T 1q7f_A 201 ---------------------GGEGITNYPIGVGINSNGEILIADNHNN--FNLTIFTQD-GQ------LISALESKVKH 250 (286)
T ss_dssp ---------------------SCTTTSCSEEEEEECTTCCEEEEECSSS--CEEEEECTT-SC------EEEEEEESSCC
T ss_pred ---------------------ccCCccCCCcEEEECCCCCEEEEeCCCC--EEEEEECCC-CC------EEEEEcccCCC
Confidence 0011134677899999998777665542 179999853 21 223322 1
Q ss_pred CceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 503 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 503 ~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
..+..++++|+|+++++ +. ++.|++|++..
T Consensus 251 ~~~~~i~~~~~g~l~vs-~~---~~~v~v~~~~~ 280 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLA-SK---DYRLYIYRYVQ 280 (286)
T ss_dssp SCEEEEEEETTTEEEEE-ET---TTEEEEEECSC
T ss_pred CcceeEEECCCCcEEEE-CC---CCeEEEEEccc
Confidence 23678999999986665 55 89999999864
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.44 E-value=2.5e-10 Score=118.16 Aligned_cols=284 Identities=10% Similarity=-0.032 Sum_probs=169.6
Q ss_pred EEecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe
Q 005315 249 IDFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 327 (702)
Q Consensus 249 i~fSpdg~~l~t~s~-d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~ 327 (702)
...+|+++++.+... .. .. . .+|.+||..+++.+..+...... .+.+|| ||++++.+
T Consensus 26 ~~~~~~~~~~yv~~~~~~-~~----~-~~v~v~D~~t~~~~~~i~~g~~p---------------~i~~sp-Dg~~lyv~ 83 (373)
T 2mad_H 26 EAPGADGRRSYINLPAHH-SA----I-IQQWVLDAGSGSILGHVNGGFLP---------------NPVAAH-SGSEFALA 83 (373)
T ss_pred ccCCCCCCEEEEeCCccc-CC----c-cEEEEEECCCCeEEEEecCCCCC---------------CeEECC-CCCEEEEE
Confidence 345688888777664 20 00 0 07899999999988777644321 579999 99988877
Q ss_pred c-----------CCeEEEEecCCcccccceeec-------cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 328 G-----------KNMISVYETESFTLIDKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 328 ~-----------d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
. ++.|.+||..+++.+...... ......+.|+|+|++|++ ++......|++++ .+.
T Consensus 84 n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v-----~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 84 STSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLF-----FQFAAGPAVGLVV-QGG 157 (373)
T ss_pred eccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEE-----EecCCCCeEEEEE-CCC
Confidence 4 578999999887766443221 122458999999999987 3222245688888 877
Q ss_pred ceeee-eeecccccceeEEccCCCEEE-EEEcccccccccccccEEEEEEecCCcceeEEE---ecCCCCc-eeEEEEee
Q 005315 390 EELRQ-KNLFSVSDCKMYWQSSGDYLA-VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---LDNKNDK-IIAFAWEP 463 (702)
Q Consensus 390 ~~~~~-~~~~~~~~~~~~~s~~g~~l~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~h~~~-v~~~~~sp 463 (702)
+.+.. .... .+ +...|++...+ +...++. +.+++. . +....... ......+ .....+.+
T Consensus 158 ~~~~~~i~~~---~~-~~~~~~~~~~~~~~~~dg~---------~~~vd~-~-g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 158 SSDDQLLSSP---TC-YHIHPGAPSTFYLLCAQGG---------LAKTDH-A-GGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred CEEeEEcCCC---ce-EEEEeCCCceEEEEcCCCC---------EEEEEC-C-CcEEEEEeccccccCCcceeecceeEe
Confidence 76554 3321 11 22334443222 2222222 233333 1 11110010 0000112 12356677
Q ss_pred CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC------------CCceeEEEEccCCCEEEEEeccC-------
Q 005315 464 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK------------GKQANALFWSPSGRFIVLAGLKG------- 524 (702)
Q Consensus 464 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~------------~~~v~~~~~spdg~~l~~~~~~~------- 524 (702)
++..+++.+..+ .+.+.|+.+.... .+..+. ......++++|+|+.++++....
T Consensus 223 ~~~~~~~~~~~~---~v~vid~~~~~~~----v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~ 295 (373)
T 2mad_H 223 KSGRIVWPVYSG---KILQADISAAGAT----NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA 295 (373)
T ss_pred cCCEEEEEcCCc---eEEEEeccCCcce----EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccC
Confidence 776666666555 7888888543211 112211 11233478999999888865310
Q ss_pred CCceEEEEECCCcceeeeccc-CceeeeEECCCCC-EEEEEEeecccccccEEEEEecc-ceeee
Q 005315 525 FNGQLEFYNVDELETMATAEH-FMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNG-KLLYR 586 (702)
Q Consensus 525 ~dg~v~i~d~~~~~~~~~~~~-~~i~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g-~~l~~ 586 (702)
..+.|.++|+.+++.+.+... ....+++|+|||+ .++++... ++.|.+||... +.+..
T Consensus 296 ~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~----~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 296 AAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG----TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCC----CCeEEEEECCCCCEEee
Confidence 146899999999988877544 3578999999999 56665522 79999999874 44444
No 200
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.44 E-value=1.2e-13 Score=110.80 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=66.2
Q ss_pred EEEECCCC-CCChhhHHHhHhccc--c-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIK--E-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~--~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.|||+||| .+++++++++|+.+| + .++.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++ .++|..
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr-~i~V~~ 79 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ-NPVVTP 79 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC-CCEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE-EEEEEE
Confidence 68999999 999999999999999 6 6999999999999999999999999999999999999999987 666654
No 201
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.43 E-value=6.4e-12 Score=128.67 Aligned_cols=268 Identities=10% Similarity=0.043 Sum_probs=164.8
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 322 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~ 322 (702)
...|.++.|+|++..++..+.+ +.++.| .+.....+..+..... .++|++ +|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~-------------~~~~~~-~g~ 57 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISE----------SELQTI---TAEPWLEISKKGLQLE-------------GLNFDR-QGQ 57 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCG----------GGSCEE---ECEEEEEEESSCCCEE-------------EEEECT-TSC
T ss_pred ccccceeeecCCccceeEEeec----------ccCccc---ccceeEEEeccCcccc-------------CcEECC-CCC
Confidence 3457889999999888777666 678888 3445555544332221 689999 999
Q ss_pred EEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCC--CCcEEEEEecCCcceeeeeeecc
Q 005315 323 YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN--QPARVSLVQIPSKEELRQKNLFS 399 (702)
Q Consensus 323 ~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~ 399 (702)
++++.. ++.|.+|+..+++...........+.+++++|+|++++. ...+ ....|+.++........
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~-----~~~~~~~~~~i~~~d~~~~~~~~------ 126 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVC-----YLGDFKSTGGIFAATENGDNLQD------ 126 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEE-----ECTTSSSCCEEEEECTTSCSCEE------
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEE-----eCCCCCCCceEEEEeCCCCEEEE------
Confidence 777766 889999999877644322123456899999999987665 2222 11345444432211000
Q ss_pred cccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcC---CC
Q 005315 400 VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD---SP 476 (702)
Q Consensus 400 ~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d---~~ 476 (702)
+ +.-..+...+.+++++|+|+.+++...+ ..
T Consensus 127 ----------------------------------~------------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 127 ----------------------------------I------------IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp ----------------------------------E------------ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred ----------------------------------E------------EccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 0 0000113467788999999776655431 00
Q ss_pred CCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCC-cceee--------ec-ccC
Q 005315 477 RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE-LETMA--------TA-EHF 546 (702)
Q Consensus 477 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~-~~~~~--------~~-~~~ 546 (702)
...|..++..++. ...+.. .....+.++|+|+|++|+++... ++.|.+|++.+ +..+. .. ...
T Consensus 161 ~~~l~~~~~~~~~----~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~--~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~ 233 (333)
T 2dg1_A 161 LGGVYYVSPDFRT----VTPIIQ-NISVANGIALSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTGHE 233 (333)
T ss_dssp CEEEEEECTTSCC----EEEEEE-EESSEEEEEECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCSSS
T ss_pred CceEEEEeCCCCE----EEEeec-CCCcccceEECCCCCEEEEEeCC--CCeEEEEEecCCCcCcccccceEEEecCCCC
Confidence 0134444432221 112211 12346889999999977665421 68999999963 32221 11 123
Q ss_pred ceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeeecc--c------cEeeEEEeeCCCCCCC
Q 005315 547 MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK--D------HFFQFLWRPRPPSFLT 606 (702)
Q Consensus 547 ~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~~~--~------~i~~~~w~p~~~~l~s 606 (702)
.+..++++++|+.+++... ++.|.+|+.++..+..... . .+..++|+|++..|+.
T Consensus 234 ~~~~i~~d~~G~l~v~~~~-----~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v 296 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII 296 (333)
T ss_dssp EEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred CCCceEECCCCCEEEEEcC-----CCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEE
Confidence 5678999999997777766 6899999998776655432 1 5789999999876653
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=5.5e-11 Score=135.72 Aligned_cols=252 Identities=10% Similarity=0.055 Sum_probs=148.5
Q ss_pred eEEEcCCCCcEEEEec--C----CeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCC-------CCCCc
Q 005315 313 VFRWGGGKDKYFAKLG--K----NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG-------GNQPA 379 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~--d----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~-------~~~~~ 379 (702)
.++||| ||++||.+. + ..|++||+.+++.+... .....+..++|+|| +.|++....... .+...
T Consensus 167 ~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 167 AWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp EEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred eEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence 689999 999999876 2 36999999998765421 11112357899999 988884321100 00145
Q ss_pred EEEEEecCCcce----eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCCCC
Q 005315 380 RVSLVQIPSKEE----LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNKND 454 (702)
Q Consensus 380 ~i~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h~~ 454 (702)
+|+.+++.+... +............+.|+|+|++|++.+.+.. .....+.++++...... . ..+..+..
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~----~~~~~l~~~d~~~~~~~~~--~~l~~~~~ 317 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT----DPVNTVHVARVTNGKIGPV--TALIPDLK 317 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT----CSCCEEEEEEEETTEECCC--EEEECSSS
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC----CCcceEEEEECCCCCCccc--EEecCCCC
Confidence 688888865542 1111111112346789999999999876542 01223566666543112 2 23334444
Q ss_pred ceeEEEEeeCCcEEEEEEcCC-CCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEE
Q 005315 455 KIIAFAWEPKGHRFAVIHGDS-PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 533 (702)
Q Consensus 455 ~v~~~~~sp~g~~l~~~~~d~-~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d 533 (702)
.+... ++|+|+.|++.+..+ +...|.+|++.++. ..+..+..-....+..++|+ ++.++++... ++..+||.
T Consensus 318 ~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~---dg~~~l~~ 390 (741)
T 1yr2_A 318 AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-GNRLFASYIH---DAKSQVLA 390 (741)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-BTEEEEEEEE---TTEEEEEE
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-CCEEEEEEEE---CCEEEEEE
Confidence 45554 459999999988743 23478889886532 11222222112245667777 5556666665 66655554
Q ss_pred CC-Ccceeee--c-ccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 534 VD-ELETMAT--A-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 534 ~~-~~~~~~~--~-~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
++ ++..... . +...+..+.++|+|+.|+....+ ....+.+++||+.+
T Consensus 391 ~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss-~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 391 FDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSS-FTQPATVLALDPAT 441 (741)
T ss_dssp EETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEE-TTEEEEEEEEETTT
T ss_pred EeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcC-CCCCCEEEEEECCC
Confidence 43 2333332 2 34667889999999877655442 01157888998764
No 203
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.41 E-value=2.9e-13 Score=103.84 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=64.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
++-|||+||+ .++++.|+.||..+|+ .++++.. +||||||+|.++++|.+|++.|||.+++++ +++|+...
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr-~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANT-TIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTE-EEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCc-EEEEEECC
Confidence 5679999999 9999999999999998 4777754 799999999999999999999999999988 89998764
No 204
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.40 E-value=5.1e-11 Score=121.67 Aligned_cols=247 Identities=12% Similarity=0.077 Sum_probs=146.7
Q ss_pred CcccceEEECCCCcEEEEEeCC-------------------------ceEEeecCcCcceeeeecC---CCeeEEEecCC
Q 005315 203 YWTESFVQWSPLGTYLATVHRQ-------------------------GAAVWGGANTFNRLMRYAH---PQVKLIDFSPG 254 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~-------------------------~i~iw~~~~~~~~~~~~~~---~~v~~i~fSpd 254 (702)
...+.+|+++|+|+++++...+ .|.+||.. +++.+..+.. .....++++|+
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN-NAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT-TCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC-CCeEEeccCCCccCCceEEEECCC
Confidence 3568899999999999888777 38899988 6666655542 35889999999
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--EEeeccCCCcccccCCCCCCCCcccc-eEEEcCCCCcEEEEec--C
Q 005315 255 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGKDKYFAKLG--K 329 (702)
Q Consensus 255 g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~s~~dg~~la~~~--d 329 (702)
|+.+++...+ +.|++|+. +|. .+..+......- .. ...+..| .++++|.++.++++.+ +
T Consensus 102 g~l~v~d~~~----------~~v~~~~~-~g~~~~~~~~~~~~~~g---~~--~~~~~~P~~ia~~~~~g~lyv~d~~~~ 165 (329)
T 3fvz_A 102 GNYWVTDVAL----------HQVFKLDP-HSKEGPLLILGRSMQPG---SD--QNHFCQPTDVAVEPSTGAVFVSDGYCN 165 (329)
T ss_dssp SCEEEEETTT----------TEEEEECT-TCSSCCSEEESBTTBCC---CS--TTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred CCEEEEECCC----------CEEEEEeC-CCCeEEEEEecccCCCC---CC--ccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence 9988888777 89999996 444 455442211000 00 0001111 5788872355555553 7
Q ss_pred CeEEEEecCCcccccceee----------ccCCeeEEEeCCC-CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeec
Q 005315 330 NMISVYETESFTLIDKKSL----------KVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 398 (702)
Q Consensus 330 ~~i~v~d~~~~~~~~~~~~----------~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 398 (702)
+.|.+|+ .++..+..... +......++++|+ +.++++ .....+|..|+..+
T Consensus 166 ~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~-------d~~~~~I~~~~~~~---------- 227 (329)
T 3fvz_A 166 SRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA-------DRENGRIQCFKTDT---------- 227 (329)
T ss_dssp CEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE-------ETTTTEEEEEETTT----------
T ss_pred CeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE-------ECCCCEEEEEECCC----------
Confidence 8999999 44544432211 1223677788877 444443 22223444443321
Q ss_pred ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc----C
Q 005315 399 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG----D 474 (702)
Q Consensus 399 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~----d 474 (702)
|+++.. +....+...+.+++++| |..++..+. +
T Consensus 228 ------------G~~~~~------------------------------~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~ 264 (329)
T 3fvz_A 228 ------------KEFVRE------------------------------IKHASFGRNVFAISYIP-GFLFAVNGKPYFGD 264 (329)
T ss_dssp ------------CCEEEE------------------------------ECCTTTTTCEEEEEEET-TEEEEEECCCCTTC
T ss_pred ------------CcEEEE------------------------------EeccccCCCcceeeecC-CEEEEeCCCEEecc
Confidence 222211 11122345666777877 332222211 1
Q ss_pred CCCCeEEEEEeecccCcCceEEEEEcC-----CCceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 475 SPRPDISFYSMRTAQHAGRVSKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 475 ~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
.....|.+|++.++. .+..+. ......++++|+|..+++... ++.|++|++..
T Consensus 265 ~~~~~v~~~~~~~g~------~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~---~~~I~~~~~~~ 322 (329)
T 3fvz_A 265 QEPVQGFVMNFSSGE------IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH---TNTVWKFTLTE 322 (329)
T ss_dssp SCCCCEEEEETTTCC------EEEEECCSSSCCSSEEEEEECTTSEEEEEESS---SCCEEEEEEEE
T ss_pred CCCcEEEEEEcCCCe------EEEEEcCCCCccCCeeEEEECCCCCEEEEECC---CCEEEEEeCCc
Confidence 112378999986654 455542 124789999999965555554 78999999863
No 205
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=107.07 Aligned_cols=76 Identities=22% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-cc--------EEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DG--------LWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~--------~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
-.+.|||+||| .+++++++++|+.+|. .. +.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 46899999999 9999999999999988 35 99999988999999999999999999999999999999876
Q ss_pred eEEEEEe
Q 005315 128 HIFAVNM 134 (702)
Q Consensus 128 h~~~v~~ 134 (702)
.++|..
T Consensus 92 -~l~V~~ 97 (99)
T 2la6_A 92 -PIKVSF 97 (99)
T ss_dssp -BCEEEE
T ss_pred -EEEEEe
Confidence 676654
No 206
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.40 E-value=1e-12 Score=104.90 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=69.5
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||+||| .+++++++++|+.+|+ .++.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++ .+.|..
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~ 82 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR-QIRTNW 82 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe-EEEEEe
Confidence 5789999999 9999999999999988 5899999988999999999999999999999999999999887 777764
No 207
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.40 E-value=1.2e-12 Score=103.41 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=69.1
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
..|||+||| .++++++.++|+.+|+ .++.++.|+.+|+++|||||+|.++++|..|+..|||..++++ .++|..-
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR-PLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE-ECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCc-EEEEEec
Confidence 579999999 9999999999999988 5899999988999999999999999999999999999999877 7777653
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.39 E-value=5.9e-11 Score=123.47 Aligned_cols=293 Identities=12% Similarity=0.043 Sum_probs=183.0
Q ss_pred CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec----
Q 005315 253 PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---- 328 (702)
Q Consensus 253 pdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~---- 328 (702)
|+++++.+....... .. +.|.++|+.+++.+.++..... |.+.+|| ||++++.+.
T Consensus 82 ~~~~~vyV~n~~~~~----~~-~~VsVID~~t~~vv~~I~vG~~---------------Pgia~Sp-Dgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFA----AI-TQQFVIDGSTGRILGMTDGGFL---------------PHPVAAE-DGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTC----SS-EEEEEEETTTTEEEEEEEECSS---------------CEEEECT-TSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCC----CC-CeEEEEECCCCEEEEEEECCCC---------------CceEECC-CCCEEEEEecccc
Confidence 577777666653100 00 5899999999999988875432 2579999 999776653
Q ss_pred -------CCeEEEEecCCcccccceeec-------cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 329 -------KNMISVYETESFTLIDKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 329 -------d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
++.|.++|..+++.+....+. ......+.++|||+++.+ +.......|.++|..+.+.+..
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV-----~n~~~~~~VsVID~~t~kvv~~ 215 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLF-----YQFSPAPAVGVVDLEGKTFDRM 215 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEE-----EECSSSCEEEEEETTTTEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEE-----EecCCCCeEEEEECCCCeEEEE
Confidence 568999999998877554332 123567899999999887 3233356799999999887665
Q ss_pred eeeccc-------ccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc-eeEEEEeeCCc
Q 005315 395 KNLFSV-------SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK-IIAFAWEPKGH 466 (702)
Q Consensus 395 ~~~~~~-------~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~-v~~~~~sp~g~ 466 (702)
...... ...-+.++++|+.+++....+. +. .... . .+.. ...+ ...+.+++++.
T Consensus 216 I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~---------v~-~~~~-~-----~~~v--~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 216 LDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGE---------TK-VTNT-E-----VFHT--EDELLINHPAFSLRSG 277 (426)
T ss_dssp EECCSEEEEEEEETTEEEEEETTSSEEEEECCTTC---------CE-EEEC-C-----CCSC--TTSCBCSCCEECTTTC
T ss_pred EEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCc---------EE-EEee-e-----eecc--CCCceeeEeeecCCCC
Confidence 543211 1111334555555544432211 00 0000 0 0001 0111 12356789999
Q ss_pred EEEEEEcCCCCCeEEEEEeecccCcCceEEEEE--cC----------CCceeEEEEccCCCEEEEEeccC-------CCc
Q 005315 467 RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT--LK----------GKQANALFWSPSGRFIVLAGLKG-------FNG 527 (702)
Q Consensus 467 ~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~--~~----------~~~v~~~~~spdg~~l~~~~~~~-------~dg 527 (702)
.+++.+..+ .|.+.|+..... ..+.. +. ......++++|+|+.++++.... ..+
T Consensus 278 ~~~~~s~~g---~V~ViD~~~~~~----~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~ 350 (426)
T 3c75_H 278 RLVWPTYTG---KIFQADLTAEGA----TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR 350 (426)
T ss_dssp EEEEEBTTS---EEEEEEECSSCE----EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred EEEEEeCCC---cEEEEeccCCce----EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence 888887766 899999854321 01111 10 01123479999999888875210 146
Q ss_pred eEEEEECCCcceeeecccC-ceeeeEECCCCC-EEEEEEeecccccccEEEEEec-cceeeee-ccccEeeEEEeeC
Q 005315 528 QLEFYNVDELETMATAEHF-MATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFN-GKLLYRT-LKDHFFQFLWRPR 600 (702)
Q Consensus 528 ~v~i~d~~~~~~~~~~~~~-~i~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~-~~~~i~~~~w~p~ 600 (702)
.|.++|+.+.+.+.+...+ ....+.|+|||+ +++++... ++.|.++|.. ++.+... ..+.-..+..+||
T Consensus 351 ~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~----s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~~ 423 (426)
T 3c75_H 351 FVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG----TQTLHIYDAATGEELRSVDQLGRGPQIITTHD 423 (426)
T ss_dssp EEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT----TTEEEEEETTTCCEEEEECCCSSSCCEEECCC
T ss_pred EEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC----CCeEEEEECCCCCEEEEecCCCCCCcEEEcCC
Confidence 8999999999998875543 478999999999 77777632 7999999987 4455453 3444444555554
No 209
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.39 E-value=5.1e-13 Score=109.55 Aligned_cols=78 Identities=18% Similarity=0.113 Sum_probs=69.1
Q ss_pred CcEEEECCC----C-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCC----HHH----HHHHHH--HhCCC
Q 005315 59 GNIIVVDNL----P-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNT----PQE----AELAKE--KTNGY 122 (702)
Q Consensus 59 ~~~~~v~~l----p-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~----~~~----a~~a~~--~~~~~ 122 (702)
.+.|||+|| | .++++.++.+|+.+|+ ..+.++.|++||+++|||||+|.+ +++ |..|+. .+||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 478999999 9 9999999999999999 599999999999999999999996 544 888988 78999
Q ss_pred ccCCeeEEEEEeccC
Q 005315 123 KLDRAHIFAVNMFDD 137 (702)
Q Consensus 123 ~~~~~h~~~v~~~~d 137 (702)
.++++ .++|+.-.+
T Consensus 82 ~I~Gr-~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGF-KFEVILNKH 95 (136)
T ss_dssp EETTE-EEEEEECCT
T ss_pred eecCc-EEEEEECcc
Confidence 99998 899986544
No 210
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.39 E-value=1.6e-10 Score=117.76 Aligned_cols=277 Identities=13% Similarity=0.073 Sum_probs=164.1
Q ss_pred eEEEEeC-----CceEEEecCCCCCCCcccc-c---C--CCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee
Q 005315 174 QFVIRSG-----TDTEVLWNDARHLKPEPVY-K---R--SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY 241 (702)
Q Consensus 174 ~~~~~~~-----~~~~~~w~~~~~~~~~~~~-~---~--~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~ 241 (702)
.|++..+ ++...+++. .+++....+ . + .......+++.. ++.+++...++ |.+||.. +++.+.++
T Consensus 4 ~~v~neg~~g~~~~~l~~~d~-~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~-t~~~~~~i 80 (328)
T 3dsm_A 4 LFITNEGNFQYSNATLSYYDP-ATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDIN-TFKEVGRI 80 (328)
T ss_dssp EEEEECCCTTSCCBEEEEEET-TTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETT-TCCEEEEE
T ss_pred EEEEecCCCCCCCceEEEEEC-CCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECc-ccEEEEEc
Confidence 4555554 566667776 333332222 1 1 112345677743 44444444444 8899999 88887777
Q ss_pred c-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 242 A-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 242 ~-~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
. ......++++|+|+..++...+ +.|.+||..+++....+....... ....+. .+.+ . +
T Consensus 81 ~~~~~p~~i~~~~~g~lyv~~~~~----------~~v~~iD~~t~~~~~~i~~g~~~~---~~~~p~-----~i~~-~-~ 140 (328)
T 3dsm_A 81 TGFTSPRYIHFLSDEKAYVTQIWD----------YRIFIINPKTYEITGYIECPDMDM---ESGSTE-----QMVQ-Y-G 140 (328)
T ss_dssp ECCSSEEEEEEEETTEEEEEEBSC----------SEEEEEETTTTEEEEEEECTTCCT---TTCBCC-----CEEE-E-T
T ss_pred CCCCCCcEEEEeCCCeEEEEECCC----------CeEEEEECCCCeEEEEEEcCCccc---cCCCcc-----eEEE-E-C
Confidence 5 3458999999999655554466 789999999999887776543100 000111 3555 5 5
Q ss_pred CcEEEEe-c-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCC--------CcEEEEEecCCcc
Q 005315 321 DKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQ--------PARVSLVQIPSKE 390 (702)
Q Consensus 321 g~~la~~-~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~--------~~~i~~~~~~~~~ 390 (702)
++.+++. + ++.|.++|+.+++++..... ......+.++|+|+++++ +.++. ...|+.++..+.+
T Consensus 141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~-----~~~~~~~~~~~~~~~~v~~id~~t~~ 214 (328)
T 3dsm_A 141 KYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTI-----TDGGYEGSPYGYEAPSLYRIDAETFT 214 (328)
T ss_dssp TEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEE-----BCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred CEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEE-----ECCCccCCccccCCceEEEEECCCCe
Confidence 6655554 3 88999999998877654432 223577889999886654 21210 1334444332211
Q ss_pred eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEE
Q 005315 391 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 470 (702)
Q Consensus 391 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 470 (702)
.. ..+.++ ....+..++++|+++++++
T Consensus 215 v~----------------------------------------------------~~~~~~-~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 215 VE----------------------------------------------------KQFKFK-LGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp EE----------------------------------------------------EEEECC-TTCCCEEEEECTTSCEEEE
T ss_pred EE----------------------------------------------------EEEecC-CCCCceeEEEecCCCEEEE
Confidence 10 011121 1235788999999998888
Q ss_pred EEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccC--CCceEEEEECCCcceeee
Q 005315 471 IHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKG--FNGQLEFYNVDELETMAT 542 (702)
Q Consensus 471 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~--~dg~v~i~d~~~~~~~~~ 542 (702)
+.. .|.+||+.++... ....+. ......++++|++..|+++...+ .++.|.+||.. ++.+.+
T Consensus 242 ~~~-----~v~~~d~~t~~~~----~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 242 INN-----DIWRMPVEADRVP----VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp ESS-----SEEEEETTCSSCC----SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred Ecc-----EEEEEECCCCcee----eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 654 6888888654421 001111 34578899999655555554110 27899999998 776654
No 211
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.38 E-value=9.5e-13 Score=104.52 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=69.4
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .++++++.++|+.+|+ ..+.|+.|+.+|+++|||||+|.++++|..|++.|||..++++ .++|..
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~ 83 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR-TIRVNL 83 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc-EEEEEE
Confidence 6799999999 9999999999999988 5899999988999999999999999999999999999999877 777653
No 212
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.38 E-value=1.1e-12 Score=106.74 Aligned_cols=77 Identities=25% Similarity=0.414 Sum_probs=70.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
++.|||+||| .++++++.++|+.+|. ..+.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++ .+.|..-.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR-FLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe-EEEEEEcC
Confidence 5789999999 9999999999999988 5899999988999999999999999999999999999999986 78887644
No 213
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.38 E-value=1.2e-12 Score=110.26 Aligned_cols=75 Identities=25% Similarity=0.307 Sum_probs=67.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
+++|||+||| .+++++|.++|+.+|+ .++.|+.|+ +.+||||||+|.+.++|+.|++.|||..++++ .+.|....
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~-~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR-KVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE-ECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE-EEEEEECC
Confidence 4689999999 9999999999999998 588999985 66999999999999999999999999999987 88887543
No 214
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.38 E-value=2.5e-10 Score=114.61 Aligned_cols=245 Identities=12% Similarity=0.092 Sum_probs=151.0
Q ss_pred eEEEcCCCCc-EEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 313 VFRWGGGKDK-YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 313 ~~~~s~~dg~-~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
.+.|+| +++ ++++.. ++.|..|+..++ ......+...+.+++++|+|++++. ..+...|..|+..+.+
T Consensus 32 g~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~-------~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 32 GPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIAC-------SHGLRRLERQREPGGE 101 (296)
T ss_dssp EEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEE-------ETTTTEEEEECSTTCC
T ss_pred CCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEE-------ecCCCeEEEEcCCCCc
Confidence 689999 998 555555 899999999876 3333344456899999999997775 3334567888875554
Q ss_pred eeeeeeec----ccccceeEEccCCCEEEEEEccccccc------ccccccEEEEEEecCCcceeEEEecCCCCceeEEE
Q 005315 391 ELRQKNLF----SVSDCKMYWQSSGDYLAVKVDRYTKTK------KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 460 (702)
Q Consensus 391 ~~~~~~~~----~~~~~~~~~s~~g~~l~~~~~~~~~~~------~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 460 (702)
........ ......++++|+|+.+++....++... ......-.||.+...+. . ..+..+......++
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~--~~~~~~~~~~~gi~ 178 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-L--SAPIRDRVKPNGLA 178 (296)
T ss_dssp EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-E--EEEECCCSSEEEEE
T ss_pred EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-E--EEeecCCCCCccEE
Confidence 22211111 112345788999987776332111000 00001136777765432 2 22334566778999
Q ss_pred EeeCCcEEEEEEcCCCCCeEEEEEee-cccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce
Q 005315 461 WEPKGHRFAVIHGDSPRPDISFYSMR-TAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 539 (702)
Q Consensus 461 ~sp~g~~l~~~~~d~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~ 539 (702)
|+|+|+.+++.+.++ .|.+|++. ++........+ ......+..++++++|+++++. ++.|.+|+.. ++.
T Consensus 179 ~s~dg~~lv~~~~~~---~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-----~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 179 FLPSGNLLVSDTGDN---ATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-----GDGVHVLTPD-GDE 248 (296)
T ss_dssp ECTTSCEEEEETTTT---EEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-----TTEEEEECTT-SCE
T ss_pred ECCCCCEEEEeCCCC---eEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-----CCeEEEECCC-CCE
Confidence 999999984444455 89999986 22110001122 2233356789999999866554 4689999987 555
Q ss_pred eee--cccCceeeeEE-CCCCCEEEEEEeecccccccEEEEEeccceeeee
Q 005315 540 MAT--AEHFMATDVEW-DPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT 587 (702)
Q Consensus 540 ~~~--~~~~~i~~~~~-spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~ 587 (702)
+.. .+.. +++++| +|+|+.|++++. +.+.-++.....+.+.
T Consensus 249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~------~~l~~~~~~~~~~~~~ 292 (296)
T 3e5z_A 249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVS------TEFWSIETNVRGLEHH 292 (296)
T ss_dssp EEEEECSSC-CCEEEEESTTSCEEEEEET------TEEEEEECSCCBCCC-
T ss_pred EEEEECCCC-ceeEEEECCCCCEEEEEcC------CeEEEEEccccccccc
Confidence 443 2334 889999 699999998887 4555555555555443
No 215
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=115.97 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=70.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccc--c-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIK--E-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~--~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++|+++|+.+| + .++.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++ .|.|..
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr-~l~V~~ 133 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE-KVDVRP 133 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE-ECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe-EeEEEE
Confidence 4799999999 999999999999999 6 5899999999999999999999999999999999999999987 888875
Q ss_pred c
Q 005315 135 F 135 (702)
Q Consensus 135 ~ 135 (702)
.
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 4
No 216
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.5e-12 Score=106.69 Aligned_cols=77 Identities=25% Similarity=0.364 Sum_probs=71.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .++++++.++|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++ .+.|....
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~a~ 86 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR-MLHVLPST 86 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC-EEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc-EEEEEEcC
Confidence 6799999999 9999999999999988 5899999998999999999999999999999999999999876 78887644
No 217
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=105.34 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=70.2
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
++.|||+||| .++++++.++|+.+++ ..+.++.|+.+|+++|||||+|.+.++|..|++.|||..++++ .++|...
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~a 82 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR-PMRVGHV 82 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS-CCEEEES
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc-EEEEEEc
Confidence 5799999999 9999999999999988 5899999988999999999999999999999999999999877 7777653
No 218
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3e-12 Score=107.79 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=70.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccc---------cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKED---------GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 128 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~---------~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h 128 (702)
.+.|||+||| .+++++|.++|+.++.. .+.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~- 93 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS- 93 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE-
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC-
Confidence 6899999999 99999999999998884 499999988999999999999999999999999999999876
Q ss_pred EEEEEec
Q 005315 129 IFAVNMF 135 (702)
Q Consensus 129 ~~~v~~~ 135 (702)
.|+|...
T Consensus 94 ~l~V~~a 100 (113)
T 2cpe_A 94 KLKVSLA 100 (113)
T ss_dssp ECEEECS
T ss_pred EEEEEEC
Confidence 7887653
No 219
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.1e-12 Score=106.71 Aligned_cols=76 Identities=22% Similarity=0.364 Sum_probs=70.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
++.|||+||| .+++++|.++|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|..|+..|||..++++ .+.|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~a 92 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL-ILNVEWA 92 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE-ECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc-EEEEEEC
Confidence 6899999999 9999999999999988 5899999988999999999999999999999999999999877 7887753
No 220
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.5e-12 Score=106.07 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=70.0
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccE-EeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGL-WMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~-~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
++.|||+||| .++++++.++|+.++. ..+ .|+.|+.+|+++|||||+|.++++|..|++.|||..++++ .+.|...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~a 83 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR-PITVSYA 83 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE-ECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCE-EEEEEEe
Confidence 6899999999 9999999999999988 478 9999988999999999999999999999999999999877 7777653
No 221
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2e-12 Score=105.13 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=70.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
++.|||+||| .++++++.++|+.+++ ..+.|+.|+.+|+++|||||+|.++++|..|+..|||..++++ .+.|...
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~a 92 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR-RIRVSGP 92 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE-EEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE-EEEEEec
Confidence 6899999999 9999999999999988 5899999998999999999999999999999999999999877 7877643
No 222
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1e-12 Score=107.61 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=68.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
...|||+||| .+++++|..+|+.+|+ .++.||.|+. |+++|||||+|.++++|..|+. +||..++++ .+.|..-.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr-~l~V~~~~ 87 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET-DLLILFKD 87 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT-TCEEEEHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCE-EEEEEEch
Confidence 5789999999 9999999999999998 5899999985 9999999999999999999999 999999887 77776544
Q ss_pred C
Q 005315 137 D 137 (702)
Q Consensus 137 d 137 (702)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 223
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.6e-12 Score=106.83 Aligned_cols=76 Identities=26% Similarity=0.310 Sum_probs=70.0
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-++.|||+||| .++++++.++|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|..|+..|||..++++ .+.|..
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~ 99 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ-PISVDW 99 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS-BCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc-EEEEEe
Confidence 36899999999 9999999999999988 5899999998999999999999999999999999999999876 677664
No 224
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.34 E-value=1.8e-12 Score=105.37 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=69.0
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++++++|+.++. ..+.++.|+.+|+++|||||+|.++++|++|++.|||..++++ .++|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr-~l~v~~a 92 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR-KVKLSGP 92 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc-EEEEEec
Confidence 4799999999 9999999999999888 4578888888999999999999999999999999999999987 7777653
No 225
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.34 E-value=5.3e-12 Score=104.82 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=70.0
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-++.|||+||| .++++++.++|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|..|++.+||..++++ .++|..
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~-~l~V~~ 102 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR-PMKVGH 102 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS-CCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE-EEEEEE
Confidence 36899999999 9999999999999988 5899999988999999999999999999999999999999887 677764
No 226
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.7e-12 Score=107.06 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=71.2
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .++++++.++|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++ .+.|....
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~V~~a~ 90 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR-TIRVNLAK 90 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE-EEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc-EEEEEeCC
Confidence 6799999999 9999999999999988 5899999988999999999999999999999999999999877 88887543
No 227
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2e-12 Score=105.93 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=69.5
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-c-cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCee---EEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-D-GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH---IFA 131 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~-~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h---~~~ 131 (702)
-.+.|||+||| .++++++.++|+.+++ . .+.|+.|+.+|+++|||||+|.+.++|+.|++.|||..++++. .++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 46899999999 9999999999999988 5 8999999989999999999999999999999999999998773 155
Q ss_pred EEe
Q 005315 132 VNM 134 (702)
Q Consensus 132 v~~ 134 (702)
|..
T Consensus 88 v~~ 90 (99)
T 2div_A 88 LNY 90 (99)
T ss_dssp EEE
T ss_pred Eee
Confidence 553
No 228
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=105.21 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=69.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .++++++.++|+.+++ ..+.|+.|+.+|+++|||||+|.++++|..|++.|||..++++ .++|..
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~ 92 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR-VIKASI 92 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE-EEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc-EEEEEe
Confidence 6799999999 9999999999999988 5899999998999999999999999999999999999999977 777754
No 229
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=2.3e-12 Score=105.43 Aligned_cols=76 Identities=17% Similarity=0.110 Sum_probs=69.0
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccc-cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKED-GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~-~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++++++|..++.. .+.++.++.+|+++|||||+|.+.++|++|++.|||..++++ .++|...
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~-~l~V~~a 92 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR-KVKLVLG 92 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE-ECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe-EEEEEEc
Confidence 5789999999 99999999999998883 577888888999999999999999999999999999999987 7887753
No 230
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.4e-12 Score=106.15 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=70.4
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++|.++|+.+++ ..+.|+.|+.+++++|||||+|.++++|..|++.|||..++++ .++|....
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~a~ 90 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR-QIRVDQAG 90 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC-CCEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe-EEEEEECC
Confidence 5799999999 9999999999999988 5899999998999999999999999999999999999999876 67776543
No 231
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.33 E-value=4.2e-10 Score=111.37 Aligned_cols=219 Identities=11% Similarity=0.059 Sum_probs=152.6
Q ss_pred CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCc-ccccCCCCCCCCcccceEEEcCCCCcEEEEecCCe
Q 005315 253 PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM 331 (702)
Q Consensus 253 pdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~ 331 (702)
..+++|++++.+ +.|.+||..+|+.+..+..+.. ... .+.++| +|++++ +.++.
T Consensus 3 ~~~~~lv~~~~~----------~~v~~~d~~tG~~~w~~~~~~~~~~~-------------~~~~~p-dG~ilv-s~~~~ 57 (276)
T 3no2_A 3 SPQHLLVGGSGW----------NKIAIINKDTKEIVWEYPLEKGWECN-------------SVAATK-AGEILF-SYSKG 57 (276)
T ss_dssp CCCEEEEECTTC----------SEEEEEETTTTEEEEEEECCTTCCCC-------------EEEECT-TSCEEE-ECBSE
T ss_pred CCCcEEEeeCCC----------CEEEEEECCCCeEEEEeCCCccCCCc-------------CeEECC-CCCEEE-eCCCC
Confidence 346889999988 9999999889999999987641 111 678999 999998 45788
Q ss_pred EEEEecCCcccccceeecc-CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccC
Q 005315 332 ISVYETESFTLIDKKSLKV-ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 410 (702)
Q Consensus 332 i~v~d~~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 410 (702)
|..||. +++.+....... ..+.++.+.|+|++++. .+.+ ..+++. ++++
T Consensus 58 V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~-----~~~~-~~~v~~-----------------------vd~~ 107 (276)
T 3no2_A 58 AKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVA-----WCGH-PSTILE-----------------------VNMK 107 (276)
T ss_dssp EEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEE-----EEST-TEEEEE-----------------------ECTT
T ss_pred EEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEE-----ecCC-CCEEEE-----------------------EeCC
Confidence 999998 788777665432 34778889999998886 2221 334432 3555
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccC
Q 005315 411 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 490 (702)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 490 (702)
|+.+..... .. . +..+......++..++|+++++...++ .|..||.. ++
T Consensus 108 Gk~l~~~~~------------------~~-~-------~~~~~~~~~~v~~~~~G~~lv~~~~~~---~v~~~d~~-G~- 156 (276)
T 3no2_A 108 GEVLSKTEF------------------ET-G-------IERPHAQFRQINKNKKGNYLVPLFATS---EVREIAPN-GQ- 156 (276)
T ss_dssp SCEEEEEEE------------------CC-S-------CSSGGGSCSCCEECTTSCEEEEETTTT---EEEEECTT-SC-
T ss_pred CCEEEEEec------------------cC-C-------CCcccccccCceECCCCCEEEEecCCC---EEEEECCC-CC-
Confidence 554322111 00 0 001122344557788999998887777 89999985 44
Q ss_pred cCceEEEEEcCC-CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeeccc--------CceeeeEECCCCCEEE
Q 005315 491 AGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--------FMATDVEWDPTGRYVA 561 (702)
Q Consensus 491 ~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~--------~~i~~~~~spdg~~l~ 561 (702)
.+.++.. .....+...++|+.++++.. ++.|..+|..+++.+.+... ..++.++..++|..++
T Consensus 157 -----~~w~~~~~~~~~~~~~~~~g~~~v~~~~---~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 157 -----LLNSVKLSGTPFSSAFLDNGDCLVACGD---AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp -----EEEEEECSSCCCEEEECTTSCEEEECBT---TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred -----EEEEEECCCCccceeEcCCCCEEEEeCC---CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 4444442 34667888999999988876 77899999998888765321 2267888999999888
Q ss_pred EEEe
Q 005315 562 TAVT 565 (702)
Q Consensus 562 t~s~ 565 (702)
+...
T Consensus 229 ~~~~ 232 (276)
T 3no2_A 229 CNWQ 232 (276)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 8753
No 232
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.33 E-value=3.8e-12 Score=107.25 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=71.1
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.-++.|||+||| .++++++.++|+.+|. ..+.|+.|+ +|+++|||||+|.+.++|+.|++.|||..++++ .+.|..
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~-~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGK-AIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS-BCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE-EEEEEE
Confidence 346899999999 9999999999999988 589999998 999999999999999999999999999999887 777775
Q ss_pred cc
Q 005315 135 FD 136 (702)
Q Consensus 135 ~~ 136 (702)
..
T Consensus 83 a~ 84 (116)
T 2fy1_A 83 AK 84 (116)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 233
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.9e-12 Score=106.27 Aligned_cols=77 Identities=23% Similarity=0.200 Sum_probs=70.8
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.+.|||+||| .++++++.++|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++ .+.|...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a 92 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK-PIRVNKA 92 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC-BCEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe-EEEEEEC
Confidence 36899999999 9999999999999988 5899999988999999999999999999999999999999876 7777753
No 234
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=3e-12 Score=104.86 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=69.0
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|+++|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|..|++ +||..++++ .+.|...
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~-~l~V~~a 86 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK-KVEVKRA 86 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC-BCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe-EEEEEEC
Confidence 6899999999 9999999999999988 589999999899999999999999999999998 999999877 7777653
No 235
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.33 E-value=3.2e-12 Score=107.92 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=70.4
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|.++|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++ .++|...
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~a 102 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK-RLKVQLK 102 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE-ECEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE-EEEEEEc
Confidence 5799999999 9999999999999988 5899999988999999999999999999999999999999876 7887753
No 236
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.33 E-value=4e-12 Score=106.43 Aligned_cols=76 Identities=25% Similarity=0.329 Sum_probs=70.4
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-++.|||+||| .++++++..+|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|..|+..|||..++++ .+.|..
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~V~~ 102 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ-TIQVDW 102 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc-EEEEEE
Confidence 36899999999 9999999999999988 5899999988999999999999999999999999999999876 777765
No 237
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.7e-12 Score=106.35 Aligned_cols=73 Identities=12% Similarity=0.239 Sum_probs=66.7
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||.||| .+++++|+++|+.++...+.|+.|+ +|+++|||||+|.+.++|++|+. +|+..++++ .+.|..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr-~i~V~~ 88 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHR-YVELFL 88 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS-CCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc-EEEEEE
Confidence 5799999999 9999999999999887789999998 99999999999999999999994 799999877 666654
No 238
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.3e-12 Score=106.46 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=70.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .++++++.++|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++ .+.|....
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~V~~a~ 91 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR-ELRVQVAR 91 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB-CCEEEECS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc-EEEEEECC
Confidence 6899999999 9999999999999988 5899999998999999999999999999999999999999977 77777543
No 239
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.33 E-value=1.6e-12 Score=100.28 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=64.8
Q ss_pred EEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.|||+||| .++++++..+|+.+|+ ..+.++.|+.+|+++|||||+|.++++|+.|++ +||..++++ .+.|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~-~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK-MVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC-CCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE-EEEEE
Confidence 38999999 9999999999999988 589999998899999999999999999999998 999999877 66654
No 240
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.2e-12 Score=104.18 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=69.2
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .++++++.++|+.+++ ..+.|+.|+ +|+++|||||+|.+.++|..|++.|||..++++ .+.|...
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a 93 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN-IIKVAIS 93 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC-EEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE-EEEEEEC
Confidence 5789999999 9999999999999988 589999998 999999999999999999999999999999876 7887653
No 241
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.32 E-value=5.6e-12 Score=100.45 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=66.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .++++++.++|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|.+|++ +++..++++ .+.|..
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~-~i~v~~ 86 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGR-VIDPKK 86 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTE-EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCE-EEEEEe
Confidence 6799999999 9999999999999988 589999999899999999999999999999995 478788877 777653
No 242
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.32 E-value=1.5e-11 Score=103.77 Aligned_cols=77 Identities=21% Similarity=0.195 Sum_probs=71.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++|.++|+.++. ..+.|+.|+.+|+++|||||+|.+.++|+.|++.|||..++++ .+.|....
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~a~ 93 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR-QIRTNWAT 93 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE-ECEEEESS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE-EEEEEEcc
Confidence 6799999999 9999999999999988 5899999988999999999999999999999999999999887 78887644
No 243
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.31 E-value=4.7e-12 Score=102.87 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=68.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||+||| .++++++.++|+.+++ ..+.|+.|+ +|+++|||||+|.++++|..|++.|||..++++ .+.|..
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~ 91 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGR-PINVSG 91 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTE-ECEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCC-EEEEEE
Confidence 5799999999 9999999999999988 589999998 599999999999999999999999999999976 777764
No 244
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.31 E-value=4.5e-12 Score=105.35 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=69.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCcc---CCeeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL---DRAHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~---~~~h~~~v~ 133 (702)
.+.|||+||| .+++++|+++|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|..|++.|||..+ .++ .+.|.
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~-~l~v~ 91 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR-PIQVK 91 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS-CCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc-eEEEE
Confidence 6799999999 9999999999999988 5899999998999999999999999999999999999886 544 77776
Q ss_pred ecc
Q 005315 134 MFD 136 (702)
Q Consensus 134 ~~~ 136 (702)
...
T Consensus 92 ~a~ 94 (106)
T 2dgp_A 92 PAD 94 (106)
T ss_dssp ECC
T ss_pred ECC
Confidence 543
No 245
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.31 E-value=3.4e-10 Score=111.76 Aligned_cols=237 Identities=6% Similarity=-0.075 Sum_probs=143.0
Q ss_pred CeeEEEecCCCCEEE-EEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 245 QVKLIDFSPGEKYLV-TYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~-t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
...+++++|+|+.++ +...+ +.|.+|+..++........+.... . .+++++ +|++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~p--------~-----~i~~~~-~g~l 80 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMY----------GRVVKLATGSTGTTVLPFNGLYQP--------Q-----GLAVDG-AGTV 80 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSS----------CEEEEECC-----EECCCCSCCSC--------C-----CEEECT-TCCE
T ss_pred CccceEECCCCCEEEEccCCC----------CcEEEecCCCcccceEeeCCcCCc--------c-----eeEECC-CCCE
Confidence 678999999999766 43555 789999865544322111111111 1 578999 9986
Q ss_pred EEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccc
Q 005315 324 FAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 403 (702)
Q Consensus 324 la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 403 (702)
+++..++.|.+|+..+.............+.+++++|+|++++. ......|+.++..+....
T Consensus 81 ~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~-------~~~~~~i~~~~~~~~~~~----------- 142 (270)
T 1rwi_B 81 YVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVA-------DRGNNRVVKLAAGSKTQT----------- 142 (270)
T ss_dssp EEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEE-------EGGGTEEEEECTTCCSCE-----------
T ss_pred EEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEE-------ECCCCEEEEEECCCceeE-----------
Confidence 66655889999998754332111112245788888888875543 112223443322110000
Q ss_pred eeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEE
Q 005315 404 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 483 (702)
Q Consensus 404 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 483 (702)
.....+...+.+++++|+|+.+++...++ .|.+|
T Consensus 143 -------------------------------------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~---~i~~~ 176 (270)
T 1rwi_B 143 -------------------------------------------VLPFTGLNDPDGVAVDNSGNVYVTDTDNN---RVVKL 176 (270)
T ss_dssp -------------------------------------------ECCCCSCCSCCCEEECTTCCEEEEEGGGT---EEEEE
T ss_pred -------------------------------------------eeccccCCCceeEEEeCCCCEEEEECCCC---EEEEE
Confidence 00001123566788999998655554455 79999
Q ss_pred EeecccCcCceEEEEE-cCC-CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCE
Q 005315 484 SMRTAQHAGRVSKLTT-LKG-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRY 559 (702)
Q Consensus 484 d~~~~~~~~~~~~~~~-~~~-~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~ 559 (702)
+..... .... ... ..+..++++|+|..+++... ++.|.+|+..+...... .+...+.+++++|+|+.
T Consensus 177 ~~~~~~------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~---~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l 247 (270)
T 1rwi_B 177 EAESNN------QVVLPFTDITAPWGIAVDEAGTVYVTEHN---TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTV 247 (270)
T ss_dssp CTTTCC------EEECCCSSCCSEEEEEECTTCCEEEEETT---TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCE
T ss_pred ecCCCc------eEeecccCCCCceEEEECCCCCEEEEECC---CCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCE
Confidence 875432 1111 112 45788999999976666554 78899999976544332 22256789999999986
Q ss_pred EEEEEeecccccccEEEEEeccce
Q 005315 560 VATAVTSVHEMENGFNIWSFNGKL 583 (702)
Q Consensus 560 l~t~s~~~~~~d~~v~iw~~~g~~ 583 (702)
+++... ++.|+++++....
T Consensus 248 ~v~~~~-----~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 248 YVADRG-----NDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEGG-----GTEEEEECCCGGG
T ss_pred EEEECC-----CCEEEEEcCCCcc
Confidence 666666 8999999987543
No 246
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.31 E-value=6e-12 Score=104.77 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=69.4
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-.+.|||+||| .++++++.++|..++. ..+.|+.|+ +|+++|||||+|.+.++|..|++.|||..++++ .+.|..
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~ 104 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGR-PMNIQL 104 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc-EEEEEE
Confidence 36899999999 9999999999999988 589999998 999999999999999999999999999999877 777764
No 247
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.5e-12 Score=103.28 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=64.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
++.|||+||| .+++++++++|+.+++ ..+.|+.|+.+|+++|||||+|.++++|..|++.|||..++++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 5799999999 9999999999999988 5899999988999999999999999999999999999998865
No 248
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.31 E-value=3.3e-12 Score=102.36 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=68.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||+||| .++++++.++|+.++. ..+.++.|+.+|+++|||||+|.+.++|..|+ .+||..++++ .+.|..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~-~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR-QIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE-ECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc-EEEEEE
Confidence 4789999999 9999999999999988 58999999889999999999999999999999 9999999877 777765
No 249
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.31 E-value=1.3e-08 Score=101.92 Aligned_cols=275 Identities=8% Similarity=-0.021 Sum_probs=166.0
Q ss_pred CCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005315 201 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 277 (702)
Q Consensus 201 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i 277 (702)
.+...+.+++++|+|+++++...++ |.+|+.. ........ ....+.+++++++|..+++...+ +.|
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~----------~~i 80 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAA----------NKI 80 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTT----------TEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCC----------CeE
Confidence 3445788999999999887766444 8899887 32222222 23358999999999988887766 789
Q ss_pred EEEEccCCcEEeeccCC--CcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccce-eeccCCe
Q 005315 278 NIFDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-SLKVENV 353 (702)
Q Consensus 278 ~vwd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~-~~~~~~v 353 (702)
..|+.. ++. ..+..+ .... ..+.+.+ +|.++++.. ++.|.+|+. ++...... ......+
T Consensus 81 ~~~~~~-g~~-~~~~~~~~~~~~-------------~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 81 GRITKK-GII-KEYTLPNPDSAP-------------YGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEECTT-SCE-EEEECSSTTCCE-------------EEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEECCC-CcE-EEEeCCCcCCCc-------------eeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 999964 443 333221 1111 1678899 998877766 789999998 44432111 1123458
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee-eeecccccceeEEccCCCEEEEEEcccccccccccccE
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ-KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 432 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 432 (702)
..+++.|+|.+.+. ......|+.++. +.+.... ..........+.++++|...++....+. +
T Consensus 144 ~~i~~~~~g~l~v~-------~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~---------i 206 (299)
T 2z2n_A 144 SFITLGSDNALWFT-------ENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK---------I 206 (299)
T ss_dssp EEEEECTTSCEEEE-------ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE---------E
T ss_pred ceEEEcCCCCEEEE-------eCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce---------E
Confidence 89999999976665 223346777776 4332221 1101122345678888885444322222 3
Q ss_pred EEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEE
Q 005315 433 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFW 510 (702)
Q Consensus 433 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~ 510 (702)
..|+ .. .......+..+...+.+++++|+|+.+++...++ .|..|+.. +. ...+ .+. ...+.++++
T Consensus 207 ~~~~--~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~---~i~~~d~~-g~----~~~~-~~~~~~~~~~~i~~ 274 (299)
T 2z2n_A 207 GRIT--TS-GEITEFKIPTPNARPHAITAGAGIDLWFTEWGAN---KIGRLTSN-NI----IEEY-PIQIKSAEPHGICF 274 (299)
T ss_dssp EEEC--TT-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT---EEEEEETT-TE----EEEE-ECSSSSCCEEEEEE
T ss_pred EEEC--CC-CcEEEEECCCCCCCceeEEECCCCCEEEeccCCc---eEEEECCC-Cc----eEEE-eCCCCCCccceEEe
Confidence 3333 32 2223334444557789999999998555543555 79999872 21 1121 222 235788999
Q ss_pred ccCCCEEEEEeccCCCceEEEEECCCc
Q 005315 511 SPSGRFIVLAGLKGFNGQLEFYNVDEL 537 (702)
Q Consensus 511 spdg~~l~~~~~~~~dg~v~i~d~~~~ 537 (702)
++|++++... .+.|..++..+.
T Consensus 275 -~~g~l~v~~~----~~~l~~~~~~~~ 296 (299)
T 2z2n_A 275 -DGETIWFAME----CDKIGKLTLIKD 296 (299)
T ss_dssp -CSSCEEEEET----TTEEEEEEEC--
T ss_pred -cCCCEEEEec----CCcEEEEEcCcc
Confidence 8888766554 466777776643
No 250
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.31 E-value=3.3e-12 Score=102.17 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=68.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCc-eeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQK-SLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~-~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
++.|||+||| .++++++.++|+.+|. ..+.|+.|+.++. ++|||||+|.++++|..|+..|||..++++ .+.|...
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ-EITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCe-EEEEEEC
Confidence 5789999999 9999999999999988 5899999987766 999999999999999999999999999987 7777653
No 251
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3.8e-12 Score=105.40 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=70.4
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .++++++.++|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++ .++|....
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR-ALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS-CBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc-EEEEEeCC
Confidence 4789999999 9999999999999988 5899999988999999999999999999999999999999877 77776533
No 252
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=2.2e-12 Score=100.22 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=66.0
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
+.|||+||| .++++++.++|+.+|+ ..+.++.|+.+|+++|||||+|.++++|..|++.+| ..++++ .+.|..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~-~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK-TIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC-CCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE-EEEEEe
Confidence 468999999 9999999999999988 589999998899999999999999999999999999 888776 666543
No 253
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=3.5e-12 Score=104.29 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=68.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCC---CCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPE---TQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~---~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.+.|||+||| .++++++.++|+.+++ ..+.|+.|+. |++++|||||+|.+.++|..|++.|||..++++ .+.|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~ 83 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH-KLEVR 83 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE-ECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe-EEEEE
Confidence 5789999999 9999999999999988 5888998876 669999999999999999999999999999976 77777
Q ss_pred ec
Q 005315 134 MF 135 (702)
Q Consensus 134 ~~ 135 (702)
..
T Consensus 84 ~a 85 (98)
T 2cpf_A 84 IS 85 (98)
T ss_dssp CS
T ss_pred Ec
Confidence 53
No 254
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=4.8e-12 Score=104.45 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=67.2
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
+..|+|+||| .+++++|+++|+.++-.++.|+.|+ +|+++|||||+|.++++|.+|+ .+||..++++ .+.|....
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr-~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR-YVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTE-EEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCe-EEEEEECC
Confidence 4699999999 9999999999998844689999998 5999999999999999999999 7999999987 77776544
No 255
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.30 E-value=6e-12 Score=104.38 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=69.0
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe--eEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA--HIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~--h~~~v~~ 134 (702)
++.|||+||| .+++++|.++|+.+++ ..+.|+.|+ +|+++|||||+|.+.++|..|++.|||..+.+. +.|.|..
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 7899999999 9999999999999988 589999998 899999999999999999999999999999873 4777764
Q ss_pred c
Q 005315 135 F 135 (702)
Q Consensus 135 ~ 135 (702)
.
T Consensus 94 a 94 (105)
T 2dnh_A 94 A 94 (105)
T ss_dssp S
T ss_pred C
Confidence 3
No 256
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=9.3e-12 Score=104.45 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=70.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhC------CCccCCeeEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN------GYKLDRAHIF 130 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~------~~~~~~~h~~ 130 (702)
.+.|||+||| .+++++|.++|..+++ ..+.|+.|+.+|+++|||||+|.+.++|..|+..+| |..++++ .+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~-~l 93 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR-QL 93 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC-EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE-EE
Confidence 6799999999 9999999999999988 589999999899999999999999999999999999 9999877 78
Q ss_pred EEEecc
Q 005315 131 AVNMFD 136 (702)
Q Consensus 131 ~v~~~~ 136 (702)
.|....
T Consensus 94 ~v~~a~ 99 (111)
T 1x4h_A 94 KVDLAV 99 (111)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 877543
No 257
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=7.4e-12 Score=103.33 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=68.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|.++|+.++-..+.|+.|+.+|+++|||||+|.+.++|..|+ .|||..++++ .+.|...
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~-~l~V~~a 90 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR-SLRVDIA 90 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE-ECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe-EEEEEEe
Confidence 6899999999 999999999999886468999999989999999999999999999999 8999999887 7887753
No 258
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=9.7e-12 Score=100.00 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=67.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .++++++.++|+.++-..+.|+.| .+|+++|||||+|.+.++|..|++ +||..++++ .+.|....
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr-~i~v~~a~ 85 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR-YIEVFREK 85 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE-EEEEEEES
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc-EEEEEECC
Confidence 6799999999 999999999999883368999999 599999999999999999999999 999999987 78877543
No 259
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.29 E-value=4.9e-12 Score=108.85 Aligned_cols=74 Identities=15% Similarity=0.242 Sum_probs=68.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc----ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE----DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~----~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.+.|||+||| .+++++|+++|+.++. .++.|+.|+. |+++|||||+|.+.++|++|++ +||..++++ .+.|.
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr-~i~V~ 120 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR-YIEVF 120 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS-EEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE-EEEEE
Confidence 6799999999 9999999999999886 4899999985 9999999999999999999999 999999988 78887
Q ss_pred ec
Q 005315 134 MF 135 (702)
Q Consensus 134 ~~ 135 (702)
..
T Consensus 121 ~a 122 (136)
T 2hgl_A 121 KS 122 (136)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 260
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=8.3e-12 Score=102.88 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=68.0
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.+.|||+||| .+++++|.++|+.+. .+.++.|+.+++++|||||+|.+.++|..|++.|||..++++ .|.|...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~--~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~V~~a 89 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN-KVTLDWA 89 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS--EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE-ECEEEEC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe-EEEEEEe
Confidence 46899999999 999999999999764 488999988999999999999999999999999999999977 7777753
No 261
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.29 E-value=3.6e-12 Score=109.45 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=69.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||+||| .+++++|.++|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|++|++.|||..++++ .+.|..
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~-~l~V~~ 122 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR-RIRVDF 122 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS-CCEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE-EEEEEE
Confidence 6799999999 9999999999999988 5899999998999999999999999999999999999999877 666653
No 262
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.28 E-value=3.5e-12 Score=110.33 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=68.0
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccc-c--EEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCC----ccCCeeEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKED-G--LWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY----KLDRAHIF 130 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~-~--~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~----~~~~~h~~ 130 (702)
.+.|||+||| .+++++|+++|+.+|.. . +.|+.|+.||++||||||+|.+. +|.+|+..|||. .++++ .|
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr-~l 100 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK-TI 100 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC-CC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE-EE
Confidence 5799999999 99999999999999883 3 89999999999999999999999 999999999999 88877 66
Q ss_pred EEEec
Q 005315 131 AVNMF 135 (702)
Q Consensus 131 ~v~~~ 135 (702)
.|...
T Consensus 101 ~V~~a 105 (131)
T 2m2b_A 101 NVEFA 105 (131)
T ss_dssp CCEEC
T ss_pred EEEEC
Confidence 66643
No 263
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.28 E-value=7.4e-10 Score=109.34 Aligned_cols=236 Identities=9% Similarity=-0.011 Sum_probs=139.7
Q ss_pred ccceEEECCCCcEEE-EEeCCc-eEEeecCcCcceee-eec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005315 205 TESFVQWSPLGTYLA-TVHRQG-AAVWGGANTFNRLM-RYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 280 (702)
Q Consensus 205 ~v~~v~~Spdg~~la-t~~~~~-i~iw~~~~~~~~~~-~~~-~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vw 280 (702)
...+++++|+|++++ +...++ |.+|+.. +..... ... ...+.+++++|+|+.+++.. + +.|.+|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~----------~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATG-STGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-N----------NRVVTL 92 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-T----------TEEEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCC-CcccceEeeCCcCCcceeEECCCCCEEEEcC-C----------CEEEEE
Confidence 556899999999766 434444 8899876 433222 122 23588999999999766665 6 789999
Q ss_pred EccCCcEEeeccCCC-cccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEe
Q 005315 281 DVRTGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSW 358 (702)
Q Consensus 281 d~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 358 (702)
|..++. ...+.... ... + .+.+++ +|+++++.. ++.|.+|+..+.............+.++++
T Consensus 93 d~~~~~-~~~~~~~~~~~p------------~-~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 93 AAGSNN-QTVLPFDGLNYP------------E-GLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp CTTCSC-CEECCCCSCSSE------------E-EEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred eCCCce-EeeeecCCcCCC------------c-ceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 975443 33332211 111 1 688999 998777665 789999975543322111112234677888
Q ss_pred CCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEe
Q 005315 359 SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIK 438 (702)
Q Consensus 359 sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~ 438 (702)
+|+|++++. ......|..++. ++..+..
T Consensus 158 ~~~g~l~v~-------~~~~~~i~~~~~-----------------------~~~~~~~---------------------- 185 (270)
T 1rwi_B 158 DNSGNVYVT-------DTDNNRVVKLEA-----------------------ESNNQVV---------------------- 185 (270)
T ss_dssp CTTCCEEEE-------EGGGTEEEEECT-----------------------TTCCEEE----------------------
T ss_pred eCCCCEEEE-------ECCCCEEEEEec-----------------------CCCceEe----------------------
Confidence 888774443 111223433332 2211100
Q ss_pred cCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC-CceeEEEEccCCCEE
Q 005315 439 ERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFI 517 (702)
Q Consensus 439 ~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l 517 (702)
. ...+...+.+++++|+|..+++...++ .|.+|+...... ......+ ..+..++++|+|+.+
T Consensus 186 --------~-~~~~~~~p~~i~~d~~g~l~v~~~~~~---~v~~~~~~~~~~-----~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 186 --------L-PFTDITAPWGIAVDEAGTVYVTEHNTN---QVVKLLAGSTTS-----TVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp --------C-CCSSCCSEEEEEECTTCCEEEEETTTS---CEEEECTTCSCC-----EECCCCSCSCEEEEEECTTCCEE
T ss_pred --------e-cccCCCCceEEEECCCCCEEEEECCCC---cEEEEcCCCCcc-----eeeccCCCCCceeEEECCCCCEE
Confidence 0 001124567899999996555554455 799998754321 1111112 357899999999877
Q ss_pred EEEeccCCCceEEEEECCCcce
Q 005315 518 VLAGLKGFNGQLEFYNVDELET 539 (702)
Q Consensus 518 ~~~~~~~~dg~v~i~d~~~~~~ 539 (702)
++... ++.|.+|++...+.
T Consensus 249 v~~~~---~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 249 VADRG---NDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEGG---GTEEEEECCCGGGS
T ss_pred EEECC---CCEEEEEcCCCccc
Confidence 76665 89999999885443
No 264
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=6.5e-12 Score=104.61 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=69.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecC-CCCCceeeEEEEEeCCHHHHHHHHHHh-CCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVD-PETQKSLGYCFIEYNTPQEAELAKEKT-NGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d-~~~~~~~g~~fv~~~~~~~a~~a~~~~-~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++|.++|+.+++ ..+.|+.| +.+|+++|||||+|.+.++|..|+..| ||..++++ .+.|..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~-~l~v~~ 93 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR-RLVLEW 93 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC-BCEEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC-EEEEEe
Confidence 6899999999 9999999999999988 58999999 789999999999999999999999999 99999877 777765
Q ss_pred c
Q 005315 135 F 135 (702)
Q Consensus 135 ~ 135 (702)
.
T Consensus 94 a 94 (107)
T 2cph_A 94 A 94 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 265
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.28 E-value=5.4e-12 Score=107.13 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=69.2
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
-.+.|||+||| .+++++++++|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++ .++|.
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~V~ 115 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK-RLKVQ 115 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE-ECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE-EEEEE
Confidence 36899999999 9999999999999988 5899999988999999999999999999999999999999877 67665
No 266
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.27 E-value=8.3e-12 Score=105.49 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=67.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc----ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE----DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~----~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.+.|||+||| .+++++|.++|+.++. ..+.|+.|+. |+++|||||+|.+.++|++|++ +||..++++ .+.|.
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr-~i~V~ 93 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR-YIEVF 93 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE-EEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe-EEEEE
Confidence 6789999999 9999999999998876 5899999985 9999999999999999999999 999999887 77776
Q ss_pred ecc
Q 005315 134 MFD 136 (702)
Q Consensus 134 ~~~ 136 (702)
...
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 543
No 267
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.27 E-value=1.9e-12 Score=104.03 Aligned_cols=73 Identities=22% Similarity=0.215 Sum_probs=67.1
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
+.|||+||| .++++++.++|+.+|+ ..+.|+.|+.+|+++|||||+|.+.+ |..|+..|||..++++ .++|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~-~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR-TIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS-SCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe-EEEEEE
Confidence 479999999 9999999999999988 58999999989999999999999999 9999999999999877 666654
No 268
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=6.4e-12 Score=104.00 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=67.2
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhc-ccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCc-cCCeeEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGV-IKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK-LDRAHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~-~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~-~~~~h~~~v~ 133 (702)
-++.|||+||| .+++++|.++|+. +++ ..+.|+.|+ +|+++|||||+|.+.++|..|++.|||.. ++++ .+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~-~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK-PVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS-CCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCE-eEEEE
Confidence 46799999999 9999999999998 988 589999998 99999999999999999999999999999 8876 45544
No 269
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=6.8e-12 Score=105.74 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=70.2
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++|.++|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|..|+ .|||..++++ .|.|....
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~-~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV-PIIVQASQ 102 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE-EEEEEEHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe-EEEEEecC
Confidence 6899999999 9999999999999988 58999999989999999999999999999999 9999999877 88887543
No 270
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=8.6e-12 Score=102.53 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=67.9
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
-.+.|||+||| .+++++|+++|+.++. |.++.+ .+|+++|||||+|.+.++|++|+..|||..++++ .+.|..-.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~--v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~a~ 89 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATF--IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR-AIRLELQG 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSE--EECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE-EEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCE--EEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe-EEEEEEcC
Confidence 37899999999 9999999999999887 788888 5899999999999999999999999999999976 78887643
No 271
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=9.5e-12 Score=102.69 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=67.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|.++|+.+++ ..+.|+.| +|+++|||||+|.+.++|..|++.|||..++++ .+.|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~V~~a 90 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK-PLYVALA 90 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS-BCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc-EEEEEEe
Confidence 6799999999 9999999999999988 58889988 899999999999999999999999999999877 7777653
No 272
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.26 E-value=1.4e-11 Score=107.95 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=71.5
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.+.|||+||| .++++++.++|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++ .++|...
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a 119 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK-RLKVALA 119 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC-EEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe-EEEEEEC
Confidence 36799999999 9999999999999988 5899999998999999999999999999999999999999977 7888764
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 120 ~ 120 (139)
T 1u6f_A 120 A 120 (139)
T ss_dssp S
T ss_pred C
Confidence 3
No 273
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.26 E-value=3.7e-11 Score=102.88 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=71.2
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.-++.|||+||| .+++++++++|+.+|+ ..+.|+.|+ +|+++|||||+|.+.++|..|++.|||..++++ .+.|..
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR-PMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC-EEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc-EEEEEE
Confidence 446899999999 9999999999999988 589999998 999999999999999999999999999999877 788875
Q ss_pred cc
Q 005315 135 FD 136 (702)
Q Consensus 135 ~~ 136 (702)
..
T Consensus 111 a~ 112 (124)
T 2kt5_A 111 VA 112 (124)
T ss_dssp EC
T ss_pred eC
Confidence 43
No 274
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.2e-11 Score=101.65 Aligned_cols=75 Identities=24% Similarity=0.145 Sum_probs=69.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
++.|||+||| .+++++|.++|..+++ ..+.|+.|+ +|+++|||||+|.+.++|..|++.|||..++++ .+.|..-
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a 91 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR-PMHVKMD 91 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC-EEEEEEc
Confidence 6799999999 9999999999999988 578999998 799999999999999999999999999999876 7888753
No 275
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=9.4e-12 Score=101.04 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=66.2
Q ss_pred CcEEEECCCC-CCChhhHH----HhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFE----KLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~----~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
.+.|||+||| .+++++++ ++|+.+|+ ..+.|+.|+.+ +|||||+|.+.++|++|++.|||..++++ .++|
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr-~l~V 84 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK-KILV 84 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE-EEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe-EEEE
Confidence 5789999999 99999999 99998887 58999999754 99999999999999999999999999987 8888
Q ss_pred Eec
Q 005315 133 NMF 135 (702)
Q Consensus 133 ~~~ 135 (702)
...
T Consensus 85 ~~a 87 (96)
T 2dgx_A 85 SLA 87 (96)
T ss_dssp EEC
T ss_pred EEc
Confidence 753
No 276
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.26 E-value=1.2e-11 Score=106.48 Aligned_cols=75 Identities=27% Similarity=0.332 Sum_probs=69.5
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++|..+|+.++. ..+.|+.|..+|+++|||||+|.+.++|..|++.|||..++++ .|.|..
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~ 98 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ-PISVDW 98 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS-BCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe-EEEEEE
Confidence 6899999999 9999999999999988 5899999988999999999999999999999999999999877 677664
No 277
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.26 E-value=1.8e-11 Score=109.53 Aligned_cols=78 Identities=26% Similarity=0.376 Sum_probs=71.8
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.+.|||+||| .+++++|.++|+.+++ ..+.|+.|+.+++++|||||+|.+.++|.+|+..|||..++++ .|.|...
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR-IIRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE-ECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe-EEEEEEC
Confidence 46899999999 9999999999999988 5899999998999999999999999999999999999999876 7888764
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 117 ~ 117 (156)
T 1h2v_Z 117 A 117 (156)
T ss_dssp S
T ss_pred C
Confidence 4
No 278
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.26 E-value=6.2e-10 Score=114.12 Aligned_cols=175 Identities=12% Similarity=0.048 Sum_probs=122.4
Q ss_pred ccceEEECCCCcEEEEEeCCceEEeecCcCcc-----------eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005315 205 TESFVQWSPLGTYLATVHRQGAAVWGGANTFN-----------RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~-----------~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~ 273 (702)
.++.+++|+.+.+|++++.+++++|+.. ... ......++.|..++| |+++|+++ .+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~-~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~-~~--------- 105 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQ-LLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVS-TR--------- 105 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHH-HHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEE-ES---------
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhh-HhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEE-cC---------
Confidence 6899999999999999999999999865 332 223345566999999 99999998 66
Q ss_pred ccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCC
Q 005315 274 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVEN 352 (702)
Q Consensus 274 ~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~ 352 (702)
+.|++||+.+.........+...+. .+.+.+ .. +|.+. +|.|.+|++.++.... ...+
T Consensus 106 -~~l~v~dv~sl~~~~~~~~~~~~v~-------------~i~~~~-p~--~av~~~dG~L~v~dl~~~~~~~----~~~~ 164 (388)
T 1xip_A 106 -NALYSLDLEELSEFRTVTSFEKPVF-------------QLKNVN-NT--LVILNSVNDLSALDLRTKSTKQ----LAQN 164 (388)
T ss_dssp -SEEEEEESSSTTCEEEEEECSSCEE-------------EEEECS-SE--EEEEETTSEEEEEETTTCCEEE----EEES
T ss_pred -CcEEEEEchhhhccCccceeeccee-------------eEEecC-CC--EEEEECCCCEEEEEccCCcccc----ccCC
Confidence 7899999876654444443333321 456666 42 55555 9999999999776542 3467
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC---cceeeeee------ecccccceeEEccCCCEEEEEEcc
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS---KEELRQKN------LFSVSDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~------~~~~~~~~~~~s~~g~~l~~~~~~ 420 (702)
|.+++|||+| +++ +..++.++++..+... ...+.... ........+.|.+++.++++....
T Consensus 165 Vs~v~WSpkG--~~v-----g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~ 234 (388)
T 1xip_A 165 VTSFDVTNSQ--LAV-----LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNV 234 (388)
T ss_dssp EEEEEECSSE--EEE-----EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECC
T ss_pred ceEEEEcCCc--eEE-----EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCC
Confidence 9999999999 344 4478887777555433 21221100 123455668999999999876553
No 279
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.25 E-value=2.5e-08 Score=99.65 Aligned_cols=270 Identities=8% Similarity=-0.015 Sum_probs=164.3
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccC--CCcccccCCCCCCCCcccceEEEcCCCC
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
..+.+++++|+|+.+++...+ +.|.+||.. ++.. .+.. +.... ..+.+++ +|
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~----------~~v~~~d~~-~~~~-~~~~~~~~~~~-------------~~i~~~~-~g 68 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKA----------NMISCINLD-GKIT-EYPLPTPDAKV-------------MCLTISS-DG 68 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTT----------TEEEEECTT-CCEE-EEECSSTTCCE-------------EEEEECT-TS
T ss_pred CCccceEECCCCCEEEEecCC----------CcEEEEcCC-CCeE-EecCCcccCce-------------eeEEECC-CC
Confidence 358999999999988877666 789999976 5543 3221 11111 1678899 99
Q ss_pred cEEEEec-CCeEEEEecCCcccccceee--ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee-ee
Q 005315 322 KYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NL 397 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 397 (702)
.++++.. ++.|..|+.. +.. ..... ....+.++++.|+|.+++. ......|+.++. ..+..... ..
T Consensus 69 ~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~-------~~~~~~i~~~d~-~g~~~~~~~~~ 138 (299)
T 2z2n_A 69 EVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFT-------EMNGNRIGRITD-DGKIREYELPN 138 (299)
T ss_dssp CEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEE-------ETTTTEEEEECT-TCCEEEEECSS
T ss_pred CEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEE-------ecCCceEEEECC-CCCEEEecCCC
Confidence 8877766 7889999876 322 11111 2335889999999887665 222446777776 33221111 10
Q ss_pred cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCC
Q 005315 398 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 477 (702)
Q Consensus 398 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 477 (702)
.......+.+.++|...++....+ .++.++. ........+..+...+.+++++++|+.+++....+
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~-----------~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-- 204 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNN-----------AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN-- 204 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTT-----------EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT--
T ss_pred CCCCCceEEEcCCCCEEEEeCCCC-----------EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc--
Confidence 112334567888886555433222 2444443 22222333434456688999999998655544455
Q ss_pred CeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee---cccCceeeeE
Q 005315 478 PDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVE 552 (702)
Q Consensus 478 ~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~---~~~~~i~~~~ 552 (702)
.|.+|+. ++.. .. ..+. ...+..++++|+|+.+++... ++.|..||.. ++.... .+...+.+++
T Consensus 205 -~i~~~~~-~g~~----~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~ 273 (299)
T 2z2n_A 205 -KIGRITT-SGEI----TE-FKIPTPNARPHAITAGAGIDLWFTEWG---ANKIGRLTSN-NIIEEYPIQIKSAEPHGIC 273 (299)
T ss_dssp -EEEEECT-TCCE----EE-EECSSTTCCEEEEEECSTTCEEEEETT---TTEEEEEETT-TEEEEEECSSSSCCEEEEE
T ss_pred -eEEEECC-CCcE----EE-EECCCCCCCceeEEECCCCCEEEeccC---CceEEEECCC-CceEEEeCCCCCCccceEE
Confidence 7888987 4331 12 2222 235789999999986665544 6889999984 433221 2235678899
Q ss_pred ECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 553 WDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 553 ~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
+ ++|+..++... +.+..++...
T Consensus 274 ~-~~g~l~v~~~~------~~l~~~~~~~ 295 (299)
T 2z2n_A 274 F-DGETIWFAMEC------DKIGKLTLIK 295 (299)
T ss_dssp E-CSSCEEEEETT------TEEEEEEEC-
T ss_pred e-cCCCEEEEecC------CcEEEEEcCc
Confidence 9 88886555433 6677776653
No 280
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=8.1e-12 Score=105.39 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=66.3
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-----ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-----DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 130 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-----~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~ 130 (702)
.-...|||+||| .+++++++++|+.++. .++.|+.|+ +|+++|||||+|.+.++|++|++. |+..++++ .+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR-~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR-YI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC-EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe-EE
Confidence 346899999999 9999999999998875 479999996 999999999999999999999997 99888877 66
Q ss_pred EEEe
Q 005315 131 AVNM 134 (702)
Q Consensus 131 ~v~~ 134 (702)
.|..
T Consensus 98 ~V~~ 101 (123)
T 2dha_A 98 ELFR 101 (123)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 6654
No 281
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.1e-11 Score=102.46 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=68.5
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCC-CceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPET-QKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~-~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|.++|+.++-..+.|+.|+.+ |+++|||||+|.+.++|.+|+ .|||..++++ .+.|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~-~l~V~~a 91 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK-RIRVDVA 91 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE-ECEEEEC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc-EEEEEEc
Confidence 5899999999 999999999999988458999999887 999999999999999999999 9999999877 7777753
No 282
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.25 E-value=7.8e-12 Score=104.57 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=67.5
Q ss_pred CcEEEECCCC-CCChhhHH---HhHhcccc-ccEEeecCCCCC---ceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 005315 59 GNIIVVDNLP-VVPKEKFE---KLEGVIKE-DGLWMPVDPETQ---KSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 130 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~---~l~~~~~~-~~~~~~~d~~~~---~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~ 130 (702)
.+.|||+||| .++++++. ++|+.+++ ..+.|+.|..++ +++|||||+|.++++|++|++.|||..++++ .+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr-~l 93 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR-TL 93 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE-EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE-EE
Confidence 6799999999 99999999 99999988 588999997654 5669999999999999999999999999987 88
Q ss_pred EEEe
Q 005315 131 AVNM 134 (702)
Q Consensus 131 ~v~~ 134 (702)
.|..
T Consensus 94 ~V~~ 97 (111)
T 2cpi_A 94 KASL 97 (111)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8875
No 283
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.25 E-value=4.7e-09 Score=106.04 Aligned_cols=240 Identities=11% Similarity=0.107 Sum_probs=148.3
Q ss_pred CCeeEEEecCCCCEEEE-------EcCCCCCCCcCCCccEEEEEEccCCcEEeeccC----CCcccccCCCCCCCCcccc
Q 005315 244 PQVKLIDFSPGEKYLVT-------YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG----SADEFAVGGTGGVAGVSWP 312 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t-------~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~w~ 312 (702)
....+++|+++|+.+++ ...+ +.|.+||..+++....... +...+ .
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~~~------------~- 74 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPA----------GEILRIDLKTGKKTVICKPEVNGYGGIP------------A- 74 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEEC----------CEEEEECTTTCCEEEEECCEETTEECCE------------E-
T ss_pred CCccCceECCCCCEEEEEeccccCCCCC----------CEEEEEeCCCCcEEEEEecccCCCCCCC------------c-
Confidence 34789999999987777 4445 6899999878875432210 11111 1
Q ss_pred eEEEcCCC-CcEEEEecCCeEEEEecCCcccccc-ee----eccCCeeEEEeCCCCCeEEEEeecCCCCCC---------
Q 005315 313 VFRWGGGK-DKYFAKLGKNMISVYETESFTLIDK-KS----LKVENVMDFSWSPTDPIISLFVPELGGGNQ--------- 377 (702)
Q Consensus 313 ~~~~s~~d-g~~la~~~d~~i~v~d~~~~~~~~~-~~----~~~~~v~~~~~sp~~~~la~~~~~~~~~~~--------- 377 (702)
.+.+++ + |+++++...+.|.+|+.. ++.... .. .....+.+++++|+|++++. ...+.
T Consensus 75 ~i~~~~-~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~-----~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 75 GCQCDR-DANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT-----APAGEVAPADYTRS 147 (314)
T ss_dssp EEEECS-SSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEE-----ECBCBCTTSCCCBT
T ss_pred eEEEec-CCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEE-----ecCccccccccccc
Confidence 678999 8 776666655689999987 554321 11 11234778889998876654 11111
Q ss_pred ----CcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005315 378 ----PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 453 (702)
Q Consensus 378 ----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 453 (702)
...|+.+ .++|.... +..+.
T Consensus 148 ~~~~~~~l~~~-----------------------~~~g~~~~---------------------------------~~~~~ 171 (314)
T 1pjx_A 148 MQEKFGSIYCF-----------------------TTDGQMIQ---------------------------------VDTAF 171 (314)
T ss_dssp TSSSCEEEEEE-----------------------CTTSCEEE---------------------------------EEEEE
T ss_pred ccCCCCeEEEE-----------------------CCCCCEEE---------------------------------eccCC
Confidence 0122221 22211100 00112
Q ss_pred CceeEEEEe----eCCcEEEEEEc-CCCCCeEEEEEeec-ccCcCceEEEEEcCC---CceeEEEEccCCCEEEEEeccC
Q 005315 454 DKIIAFAWE----PKGHRFAVIHG-DSPRPDISFYSMRT-AQHAGRVSKLTTLKG---KQANALFWSPSGRFIVLAGLKG 524 (702)
Q Consensus 454 ~~v~~~~~s----p~g~~l~~~~~-d~~~~~v~i~d~~~-~~~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~~~ 524 (702)
.....++|+ |+|+.++++.. ++ .|.+|++.. +.. .....+..+.. .....++++++|+++++...
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~---~i~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-- 245 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTK---KLWSYDIKGPAKI-ENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-- 245 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTT---EEEEEEEEETTEE-EEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET--
T ss_pred CCcceEEEecccCCCCCEEEEEECCCC---eEEEEECCCCCcc-ccceEEEECCCCCCCCCCceEECCCCCEEEEEcC--
Confidence 345678999 99987766654 45 899999862 211 01112333433 34678999999988777655
Q ss_pred CCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 525 FNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 525 ~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
++.|.+||..+++.+.. .+...+.+++++|+|++|+.++.. ++.|..|++.
T Consensus 246 -~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~----~~~l~~~~~~ 298 (314)
T 1pjx_A 246 -SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE----NNAVWKFEWQ 298 (314)
T ss_dssp -TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT----TTEEEEEECS
T ss_pred -CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC----CCeEEEEeCC
Confidence 78999999986655433 334678899999999977766652 5788888876
No 284
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.25 E-value=4e-12 Score=98.10 Aligned_cols=71 Identities=25% Similarity=0.436 Sum_probs=63.5
Q ss_pred EEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.|||+||| .++++++.++|+.+|+ ..+.|+.|+.+|+++|||||+|.++++|..|++. ++..++++ .+.|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~-~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLS-KCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTB-CCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCE-EEEEE
Confidence 48999999 9999999999999988 5899999998999999999999999999999985 88888876 55443
No 285
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=108.69 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=69.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.+.|||+||| .+++++++++|+.+++ ..+.|+.|+.+|+++|||||+|.++++|.+|++.|||..++++ .++|.
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~ 138 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR-TIRVN 138 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE-EEEEE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE-EEEEE
Confidence 6899999999 9999999999999988 5899999988999999999999999999999999999999977 77765
No 286
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.25 E-value=1.5e-11 Score=99.10 Aligned_cols=73 Identities=23% Similarity=0.220 Sum_probs=65.4
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||+||| .+++++++++|+.+++ ..+.|+.+ +|+++|||||+|.+.++|..|++.|||..++++ .++|..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~ 82 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR-EIDVRI 82 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB-CCCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc-EEEEEE
Confidence 6799999999 9999999999999988 57888875 799999999999999999999999999999877 555543
No 287
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1e-11 Score=102.51 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=66.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccc-c-EEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKED-G-LWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~-~-~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|.++|+.++.. . +.|+.| .+|+++|||||+|.++++|++|+.. |+..++++ .+.|..-
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr-~i~v~~~ 91 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR-YIEIFKS 91 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS-CCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc-EEEEEEC
Confidence 5799999999 99999999999999883 3 889999 5999999999999999999999998 99999887 6666553
No 288
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=8.9e-12 Score=104.77 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=68.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccc--cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKED--GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~--~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|.++|+.++.. ++.|+.|+ +|+++|||||+|.+.++|.+|++. ||..++++ .+.|...
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr-~i~v~~a 91 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGR-EAFVHVV 91 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTE-EEEEEEE
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCe-EEEEEEC
Confidence 5789999999 99999999999988875 49999998 999999999999999999999988 99999887 7787765
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 92 ~ 92 (114)
T 2cpy_A 92 T 92 (114)
T ss_dssp C
T ss_pred C
Confidence 4
No 289
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.23 E-value=8.8e-12 Score=102.08 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=65.9
Q ss_pred cCCCCcEEEECCCC-CCChhhHHHhHhccccccEEeecCC-CCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 55 ESGFGNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDP-ETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 55 ~~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~-~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
...-.+.|||+||| .+++++++++|+.+|-..+.|+.|+ .+|+++|||||+|.+.++|..|+ .|||..++++ .+.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~-~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR-RIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB-CCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe-EEEE
Confidence 33457899999999 9999999999999884488999997 68999999999999999999999 9999999877 5555
Q ss_pred Ee
Q 005315 133 NM 134 (702)
Q Consensus 133 ~~ 134 (702)
..
T Consensus 93 ~~ 94 (100)
T 2j76_E 93 DV 94 (100)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 290
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=102.88 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=66.2
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc----ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE----DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~----~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
-.+.|||+||| .++++++..+|+.++. .++.|+.|+. |+++|||||+|.+.++|.+|+. +||..++++ .+.|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr-~i~V 86 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR-YVEV 86 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS-CCCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe-EEEE
Confidence 36899999999 9999999999998766 5899999985 9999999999999999999999 999999877 5665
Q ss_pred Ee
Q 005315 133 NM 134 (702)
Q Consensus 133 ~~ 134 (702)
..
T Consensus 87 ~~ 88 (107)
T 2lmi_A 87 YE 88 (107)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 291
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=1e-11 Score=102.92 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=67.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++|.++|+.+++ ..+.|+.|+.+|+++|||||+|.++++|..|+.. ||..++++ .+.|..
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~-~l~V~~ 91 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR-NIDPKP 91 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE-EEBCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE-EEEEEE
Confidence 5799999999 9999999999999988 5899999988999999999999999999999999 99999877 666654
No 292
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.22 E-value=1.2e-11 Score=102.88 Aligned_cols=75 Identities=17% Similarity=0.280 Sum_probs=67.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
++.|||+||| .++++++.++|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|.+|++.+ |..++++ .+.|...
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~-~l~V~~a 101 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK-TIDPKVA 101 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE-EEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE-EEEEEEc
Confidence 5799999999 9999999999999988 58999999989999999999999999999999987 4778876 7777653
No 293
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.22 E-value=2.7e-11 Score=109.45 Aligned_cols=76 Identities=25% Similarity=0.329 Sum_probs=69.8
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-++.|||+||| .++++.|..+|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|..|+..|||..+.++ .|.|..
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~V~~ 148 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ-TIQVDW 148 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE-EEEEEE
Confidence 46789999999 9999999999999998 5899999988999999999999999999999999999999876 777765
No 294
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.22 E-value=1e-09 Score=116.53 Aligned_cols=290 Identities=9% Similarity=0.093 Sum_probs=176.0
Q ss_pred eEEEecC-----CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeecc--CCCcccccCCCCCCCCcccceEEE-c-
Q 005315 247 KLIDFSP-----GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK--GSADEFAVGGTGGVAGVSWPVFRW-G- 317 (702)
Q Consensus 247 ~~i~fSp-----dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~w~~~~~-s- 317 (702)
..+..|. ||++|.....+ +..|.+.|+.+.++.+.+. ...... .+++ +
T Consensus 88 hh~~~s~t~g~~DG~~lfVnd~~---------~~rVavIdl~t~~~~~ii~ip~g~~ph--------------g~~~~~~ 144 (595)
T 1fwx_A 88 HHVHMSFTEGKYDGRFLFMNDKA---------NTRVARVRCDVMKCDAILEIPNAKGIH--------------GLRPQKW 144 (595)
T ss_dssp CCEEEEEETTEEEEEEEEEEETT---------TTEEEEEETTTTEEEEEEECSSCCSEE--------------EEEECCS
T ss_pred CccccCCCCCCcCCCEEEEEcCC---------CCEEEEEECCCceEeeEEeCCCCCCCc--------------ceeeeec
Confidence 3456665 89998887665 1679999999999888443 322222 4565 5
Q ss_pred CCCCcEEEEec-------------------CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCC-
Q 005315 318 GGKDKYFAKLG-------------------KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQ- 377 (702)
Q Consensus 318 ~~dg~~la~~~-------------------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~- 377 (702)
| +++|+.+.+ ++.+.+.|..+++.+....... ....++.+|+|+++.+..... ...
T Consensus 145 p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~s--e~~~ 220 (595)
T 1fwx_A 145 P-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNS--EKGM 220 (595)
T ss_dssp S-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCT--TCCS
T ss_pred C-CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCc--ccCc
Confidence 8 899887772 4689999999887776543322 456788999999888732211 110
Q ss_pred ---------CcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEec--CCcceeE
Q 005315 378 ---------PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE--RDIPIEV 446 (702)
Q Consensus 378 ---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~ 446 (702)
...+.+++.+.... ..++|++... +.+.+.+... .......
T Consensus 221 ~i~~~~~~~~d~v~V~~~~~~~~---------------~v~~Gk~~~i-------------~~V~VID~~~~~~~~~~~~ 272 (595)
T 1fwx_A 221 TLPEMTAAEMDHIVVFNIAEIEK---------------AIAAGDYQEL-------------NGVKVVDGRKEASSLFTRY 272 (595)
T ss_dssp SHHHHTCCSEEEEEEEEHHHHHH---------------HHHHTCSEEE-------------TTEEEEECSGGGCCSSEEE
T ss_pred chhhccccccceEEEeeccceeE---------------eccCCCeeEE-------------CcEEEEeCcccCCceeEEE
Confidence 02233333322111 1334443222 2255666554 2221334
Q ss_pred EEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeeccc------CcCceEEEEEcC-CCceeEEEEccCCCEEEE
Q 005315 447 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ------HAGRVSKLTTLK-GKQANALFWSPSGRFIVL 519 (702)
Q Consensus 447 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~------~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~ 519 (702)
+.. .....++.++|||++++++.... ++|.++|+.+.. ...+...+..+. +.....++|+|+| ++++
T Consensus 273 Ipv---g~~PhGv~~sPDGk~v~V~~~~s--~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~ 346 (595)
T 1fwx_A 273 IPI---ANNPHGCNMAPDKKHLCVAGKLS--PTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYT 346 (595)
T ss_dssp EEE---ESSCCCEEECTTSSEEEEECTTS--SBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEE
T ss_pred Eec---CCCceEEEEcCCCCEEEEeCCCC--CeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEE
Confidence 444 45677899999999998877643 389999997531 011111334444 4467889999999 6665
Q ss_pred EeccCCCceEEEEECCC----------cceeeeccc-Cc------eeeeEECCCCCEEEEEEeecccccccE--------
Q 005315 520 AGLKGFNGQLEFYNVDE----------LETMATAEH-FM------ATDVEWDPTGRYVATAVTSVHEMENGF-------- 574 (702)
Q Consensus 520 ~~~~~~dg~v~i~d~~~----------~~~~~~~~~-~~------i~~~~~spdg~~l~t~s~~~~~~d~~v-------- 574 (702)
... .+++|..||++. .+.+.+... .. ...+..+|||+||+++... ....+
T Consensus 347 t~~--ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~---skdr~~~~gp~~~ 421 (595)
T 1fwx_A 347 SLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF---SKDRFLNVGPLKP 421 (595)
T ss_dssp EET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC---CTTSSCCCCSSCC
T ss_pred EEe--cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC---CccccccCCCCCC
Confidence 543 389999999986 344443211 11 1245678999999988763 01233
Q ss_pred ---EEEEeccceeeeecc----ccEeeEEEeeCCC
Q 005315 575 ---NIWSFNGKLLYRTLK----DHFFQFLWRPRPP 602 (702)
Q Consensus 575 ---~iw~~~g~~l~~~~~----~~i~~~~w~p~~~ 602 (702)
.++++.|..+...+. .....+...|+.+
T Consensus 422 ~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~~~~ 456 (595)
T 1fwx_A 422 ENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSI 456 (595)
T ss_dssp EEEEEEECSSSSCEEEEEEEESSCCCCEEEECTTT
T ss_pred CcceEEEcCCCcEEEEEEEcCCCCCCceEEccHHH
Confidence 889998766554432 3444556666543
No 295
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.22 E-value=2.3e-11 Score=97.35 Aligned_cols=70 Identities=10% Similarity=-0.016 Sum_probs=61.0
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCc--cCCeeEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK--LDRAHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~--~~~~h~~~v~ 133 (702)
-+++|||+||| .+++++|..||+.+|+ .++.|+. .||||||+|.+.++|..|++.+||.. +.++ ++.|.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr-~i~V~ 92 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGH-PAFVN 92 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTE-EEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCc-EEEEE
Confidence 37899999999 9999999999999998 4777763 47999999999999999999999987 5566 77776
Q ss_pred e
Q 005315 134 M 134 (702)
Q Consensus 134 ~ 134 (702)
-
T Consensus 93 ~ 93 (100)
T 3r27_A 93 Y 93 (100)
T ss_dssp E
T ss_pred e
Confidence 4
No 296
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.3e-11 Score=99.93 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=60.2
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCC--CccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG--YKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~--~~~~~~h~~~v~~ 134 (702)
++.|||+||| .+++++|+.||+.+|+ .++.|+.| ||||||+|.+.++|..|++.+++ ..++++ ++.|..
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr-~l~V~~ 88 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ-PIYIQF 88 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTE-ECCBCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCE-EEEEEE
Confidence 6899999999 9999999999999998 58888865 79999999999999999998874 677776 666553
No 297
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.1e-11 Score=103.02 Aligned_cols=75 Identities=25% Similarity=0.242 Sum_probs=68.7
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|.++|+.+++ ..+.|+.|+.+++++|||||+|.+.++|++|++.+|+ .++++ .+.|...
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~-~l~V~~a 93 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR-KANVNLA 93 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE-ECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE-EEEEEEc
Confidence 5899999999 9999999999999988 5899999988999999999999999999999999998 78776 7777753
No 298
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.22 E-value=8.5e-12 Score=105.40 Aligned_cols=74 Identities=24% Similarity=0.347 Sum_probs=64.4
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhccccc--cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKED--GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~~--~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-++.|||+||| .+++++|+++|+.++-. ++.|+.|+. |+++|||||+|.++++|++|++. ++..++++ .+.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR-~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHR-YIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTB-CCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCE-EEEEEE
Confidence 36789999999 99999999999988545 799999985 99999999999999999999985 77888877 555543
No 299
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=8.1e-10 Score=124.84 Aligned_cols=254 Identities=9% Similarity=0.053 Sum_probs=152.9
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 324 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~l 324 (702)
.+..++|||||++||.+.... ......|++||+.+|+.+.... +.... ..++|+ ||+.|
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~-----G~~~~~i~v~dl~tg~~~~~~~-~~~k~-------------~~~~Ws--Dg~~l 188 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLA-----GSDWREIHLMDVESKQPLETPL-KDVKF-------------SGISWL--GNEGF 188 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECS-----SCCEEEEEEEETTTCSEEEEEE-EEEES-------------CCCEEE--TTTEE
T ss_pred EEEEEEECCCCCEEEEEEecC-----CCceEEEEEEECCCCCCCcccc-CCcee-------------ccEEEe--CCCEE
Confidence 478899999999999655431 1112689999999998765411 11100 046888 66767
Q ss_pred EEec-CC-------------eEEEEecCCcccccceeec-----cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEe
Q 005315 325 AKLG-KN-------------MISVYETESFTLIDKKSLK-----VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 385 (702)
Q Consensus 325 a~~~-d~-------------~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 385 (702)
+.+. +. .|.+|++.+.......... ...+.++.|||||++|++.... ......||+++
T Consensus 189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~~~~~~i~~~d 265 (693)
T 3iuj_A 189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAAN---STSGNRLYVKD 265 (693)
T ss_dssp EEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEES---SSSCCEEEEEE
T ss_pred EEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEcc---CCCCcEEEEEE
Confidence 6665 42 4899998766532222222 2236789999999998774321 22335889998
Q ss_pred cCCcc-eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCCceeEEEEee
Q 005315 386 IPSKE-ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEP 463 (702)
Q Consensus 386 ~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp 463 (702)
+.... ............. ..|+++|..|++.+.... .+..|+.++..+... ....+..|...+. .|+|
T Consensus 266 ~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~ 335 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADV-SLVDNKGSTLYLLTNRDA-------PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS 335 (693)
T ss_dssp TTSTTCCCEEEECSSSSCE-EEEEEETTEEEEEECTTC-------TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE
T ss_pred CCCCCCceEEEeCCCCceE-EEEeccCCEEEEEECCCC-------CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE
Confidence 76542 2222221111111 237888888888766431 123555555433211 1123445555554 8999
Q ss_pred CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc--CC-CceeEEEEccCCCEEEEEecc-CCCceEEEEECCCcce
Q 005315 464 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KG-KQANALFWSPSGRFIVLAGLK-GFNGQLEFYNVDELET 539 (702)
Q Consensus 464 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~-~~v~~~~~spdg~~l~~~~~~-~~dg~v~i~d~~~~~~ 539 (702)
++++|++...++....|++|++..+ ....+ +. ..+..+.++|+++.|++...+ ...+.|+.||+.+++.
T Consensus 336 ~g~~lv~~~~~~g~~~l~~~d~~g~-------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 336 GSGYLFAEYMVDATARVEQFDYEGK-------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ETTEEEEEEEETTEEEEEEECTTSC-------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCEEEEEEEECCeeEEEEEECCCC-------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 9999988877554447888887532 22222 22 346677888999877766541 1248899999986653
No 300
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.9e-11 Score=103.32 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=69.5
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++|..+|..+++ ..+.|+.|+.+|+++|||||+|.+.++|..|++. ||..++++ .+.|....
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~-~l~V~~a~ 104 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR-VVEPKRAV 104 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE-EEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE-EEEEEECC
Confidence 5899999999 9999999999999988 5899999988999999999999999999999998 99999877 78877543
No 301
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.21 E-value=1.4e-11 Score=117.19 Aligned_cols=77 Identities=9% Similarity=0.051 Sum_probs=69.8
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhccc--c-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIK--E-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~--~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
-.+.|||+||| .+++++|+++|+.++ + ..+.|+.|+.||++||||||+|.+.++|.+|++.|||..++++ .|.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr-~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ-NPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB-CCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE-EeEEE
Confidence 35689999999 999999999999999 6 6899999999999999999999999999999999999999987 77777
Q ss_pred ec
Q 005315 134 MF 135 (702)
Q Consensus 134 ~~ 135 (702)
..
T Consensus 146 ~a 147 (229)
T 3q2s_C 146 PV 147 (229)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 302
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.21 E-value=1.8e-11 Score=104.92 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=68.7
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++|.++|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|..|+ .|||..++++ .+.|..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~-~l~V~~ 111 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR-TIKVLP 111 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE-ECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCe-EEEEEE
Confidence 5799999999 9999999999999988 58999999889999999999999999999999 8999999877 787765
No 303
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.21 E-value=2.2e-11 Score=109.45 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=71.0
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.+.|||+||| .+++++|..+|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++ .+.|...
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a 147 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR-ELRVQMA 147 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS-EEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe-EEEEEEC
Confidence 36899999999 9999999999999988 5899999988999999999999999999999999999999877 7887753
No 304
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.6e-11 Score=100.93 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=66.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++++++|+.+|+ ..+.|+.|. ++++|||||+|.+.++|+.|++.|||..++++ .+.|..
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~V~~ 103 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR-KIEVNN 103 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE-EEEEEE
Confidence 6799999999 9999999999999998 589999985 56999999999999999999999999999987 777765
No 305
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=6.7e-11 Score=99.63 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=63.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
.+.|||+||| .++++++..+|+.+++ ..+.|+.|+ +|+++|||||+|.+.++|..|++.|||..++++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 5799999999 9999999999999988 589999998 999999999999999999999999999999643
No 306
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.1e-11 Score=106.00 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=66.1
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhccccc-cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKED-GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~~-~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.+.|||+||| .+++++|..+|..++.. .+.++.+..+|+++|||||+|.+.++|.+|+. +||..++++ .+.|...
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr-~i~V~~a 101 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR-FIQVHPI 101 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS-CBEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc-EEEEEEC
Confidence 35799999999 99999999999998883 44555555699999999999999999999999 999999987 6777654
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 307
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=5.1e-11 Score=98.25 Aligned_cols=75 Identities=24% Similarity=0.248 Sum_probs=67.4
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++|.++|+.+++ ..+.|+.|+ +.++|||||+|.+.++|..|++.|||..++++ .+.|....
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~a~ 91 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGK-EVKVNWAT 91 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTE-EEEEEECC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCC-eEEEEECC
Confidence 6899999999 9999999999999988 588999985 44799999999999999999999999999976 88887644
No 308
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.20 E-value=1.3e-09 Score=123.12 Aligned_cols=251 Identities=8% Similarity=0.069 Sum_probs=151.0
Q ss_pred eEEEcCCCCcEEEEec------CCeEEEEecCCcccccceeeccCCe--eEEEeCCCCCeEEEEeecCCC------CCCC
Q 005315 313 VFRWGGGKDKYFAKLG------KNMISVYETESFTLIDKKSLKVENV--MDFSWSPTDPIISLFVPELGG------GNQP 378 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~------d~~i~v~d~~~~~~~~~~~~~~~~v--~~~~~sp~~~~la~~~~~~~~------~~~~ 378 (702)
.++||| ||++||.+. ...|++||+.+++.+.. +...+ ..++|+ ||+.|++....... ....
T Consensus 133 ~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~ 207 (693)
T 3iuj_A 133 QLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ 207 (693)
T ss_dssp EEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred EEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence 679999 999999654 25799999999876532 33333 578999 99999885432200 0345
Q ss_pred cEEEEEecCCcce----eeeeee-cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005315 379 ARVSLVQIPSKEE----LRQKNL-FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 453 (702)
Q Consensus 379 ~~i~~~~~~~~~~----~~~~~~-~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 453 (702)
.+|+++++.+... +..... .......+.|+|+|++|++....... ...+.++++....... ..+..+.
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-----~~~i~~~d~~~~~~~~--~~l~~~~ 280 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS-----GNRLYVKDLSQENAPL--LTVQGDL 280 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS-----CCEEEEEETTSTTCCC--EEEECSS
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC-----CcEEEEEECCCCCCce--EEEeCCC
Confidence 6789988866432 222111 12223456899999999887654321 1124444443332222 3333445
Q ss_pred CceeEEEEeeCCcEEEEEEcC-CCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEE
Q 005315 454 DKIIAFAWEPKGHRFAVIHGD-SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFY 532 (702)
Q Consensus 454 ~~v~~~~~sp~g~~l~~~~~d-~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~ 532 (702)
...... |+++|..|++.+.. ++...|..+++.++.. ..+..+.. ....+. .|+|+|++|++....+....|++|
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~-~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIP-ERQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEEC-CCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEec-CCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 555454 78888888877763 3334788888865431 11222221 122232 999999999887652212378999
Q ss_pred ECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEecc
Q 005315 533 NVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 581 (702)
Q Consensus 533 d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 581 (702)
++.++..... .....+..+.++|+++.|+....+. ...+.++.|++.+
T Consensus 356 d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~-~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 356 DYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENY-AQPPTLYRFEPKS 405 (693)
T ss_dssp CTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECS-SSCCEEEEECTTT
T ss_pred ECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCC-CCCCEEEEEECCC
Confidence 9985543222 2345677888999999877766520 1136788887753
No 309
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=2.2e-11 Score=101.70 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=67.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc--ccEEee-cCCCCCceeeEEEEEeCCHHHHHHHHHHhC--CCccCCeeEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE--DGLWMP-VDPETQKSLGYCFIEYNTPQEAELAKEKTN--GYKLDRAHIFAV 132 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~--~~~~~~-~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~--~~~~~~~h~~~v 132 (702)
.+.|||+||| .++++++.++|..++. ..+.++ .|..+|+++|||||+|.+.++|..|++.|| +..++++ .+.|
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~-~l~V 86 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH-QIAV 86 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB-CCEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC-eEEE
Confidence 5789999999 9999999999998875 478888 888889999999999999999999999996 5888876 7777
Q ss_pred Eecc
Q 005315 133 NMFD 136 (702)
Q Consensus 133 ~~~~ 136 (702)
....
T Consensus 87 ~~a~ 90 (109)
T 2dis_A 87 DWAE 90 (109)
T ss_dssp EESC
T ss_pred EEcC
Confidence 7543
No 310
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=5.8e-11 Score=97.94 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=66.2
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++|..+|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|..|+. ++..++++ .+.|....
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~-~l~v~~a~ 91 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR-WCDCKLPN 91 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTE-EEEEECCC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCe-EEEEEecC
Confidence 5789999999 9999999999999988 589999998899999999999999999999999 46677766 77776533
No 311
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.20 E-value=1.1e-11 Score=107.40 Aligned_cols=75 Identities=24% Similarity=0.396 Sum_probs=69.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++|.++|+.+++ ..+.|+.|+.+|+++|||||+|.+.++|+.|++.|||..++++ .|+|..
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~-~l~V~~ 123 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR-ELRVQM 123 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS-CCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE-EEEEEE
Confidence 6789999999 9999999999999988 5899999988999999999999999999999999999999877 777765
No 312
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.19 E-value=1e-09 Score=112.24 Aligned_cols=287 Identities=8% Similarity=-0.089 Sum_probs=157.7
Q ss_pred ceEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCC
Q 005315 225 GAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTG 304 (702)
Q Consensus 225 ~i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~ 304 (702)
.+.+.|.. +++.+.++....-..+.+||||++|.++.........+...+.|.+||+.+++.++++..+.....+. ..
T Consensus 47 ~vsvID~~-t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~-g~ 124 (368)
T 1mda_H 47 ENWVSCAG-CGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV-GP 124 (368)
T ss_dssp EEEEEETT-TTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB-SC
T ss_pred eEEEEECC-CCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc-CC
Confidence 46689999 89988888544322899999999998886210000000112789999999999999986431000000 00
Q ss_pred CCCCcccceEEEcCCCCcEEEEec---CCeEEE--EecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCc
Q 005315 305 GVAGVSWPVFRWGGGKDKYFAKLG---KNMISV--YETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA 379 (702)
Q Consensus 305 ~~~~~~w~~~~~s~~dg~~la~~~---d~~i~v--~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~ 379 (702)
.+. .+.+|| ||++++.+. ++.+.+ +|+.+ +. .+..++. +...|++....+
T Consensus 125 ~P~-----~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~--~i~v~~~--~~~~p~g~~~~~------------ 179 (368)
T 1mda_H 125 RVH-----IIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQ--LTKSASC--FHIHPGAAATHY------------ 179 (368)
T ss_dssp CTT-----SEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EE--EEECSSC--CCCEEEETTEEE------------
T ss_pred Ccc-----eEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ce--EEECCCc--eEEccCCCeEEE------------
Confidence 001 589999 999888775 467888 88876 11 1222221 222344433222
Q ss_pred EEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcc-----cccccccccccEEEEEEecCCcceeEEEecCCCC
Q 005315 380 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR-----YTKTKKSTYTGFELFRIKERDIPIEVLELDNKND 454 (702)
Q Consensus 380 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~-----~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~ 454 (702)
..+++|+.+.+.... +. .++... .. +.+ ...
T Consensus 180 --------------------------~~~~dg~~~~vd~~~~~~~~~~----------v~~~~t-~~-----i~v--g~~ 215 (368)
T 1mda_H 180 --------------------------LGSCPASLAASDLAAAPAAAGI----------VGAQCT-GA-----QNC--SSQ 215 (368)
T ss_dssp --------------------------CCCCTTSCEEEECCSSCCCCEE----------CCCCSC-TT-----SCB--CSC
T ss_pred --------------------------EEcCCCCEEEEECccccccCCe----------EEEEee-ee-----eeC--CCC
Confidence 012222222211111 00 000000 00 000 022
Q ss_pred ceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC------------CceeEEEEccCCCEEEEEec
Q 005315 455 KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG------------KQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 455 ~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~------------~~v~~~~~spdg~~l~~~~~ 522 (702)
+. . ++++..++..+. + .|.+.|+.+... ..+..+.- .....++++|+|+.++++..
T Consensus 216 P~---~-~~~~~~~~~vs~-~---~V~viD~~~~~~----~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~ 283 (368)
T 1mda_H 216 AA---Q-ANYPGMLVWAVA-S---SILQGDIPAAGA----TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV 283 (368)
T ss_dssp CE---E-ETTTTEEEECBS-S---CCEEEECCSSCC----EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred cc---c-cccCCEEEEEcC-C---EEEEEECCCCcc----eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEec
Confidence 22 2 566666666666 5 788888754221 12222210 01122789999999887643
Q ss_pred cC-C-----CceEEEEECCCcceeeeccc-CceeeeEECCCCCEEEEEEe-ecccccccEEEEEecc-ceeeeecc-ccE
Q 005315 523 KG-F-----NGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVT-SVHEMENGFNIWSFNG-KLLYRTLK-DHF 592 (702)
Q Consensus 523 ~~-~-----dg~v~i~d~~~~~~~~~~~~-~~i~~~~~spdg~~l~t~s~-~~~~~d~~v~iw~~~g-~~l~~~~~-~~i 592 (702)
.. . .+.+.++|+.+.+.+..... .....++|+|||++++++.. . ++.|.++|... +.+..... ...
T Consensus 284 ~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~----~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 284 EHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG----TEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp ECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT----TTEEEEEESSSCEEEEECCCCSCC
T ss_pred cccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCC----CCeEEEEECCCCcEEEEEECCCCC
Confidence 01 0 12455999999988876443 35789999999996555443 2 79999999874 44444432 344
Q ss_pred eeEEEe
Q 005315 593 FQFLWR 598 (702)
Q Consensus 593 ~~~~w~ 598 (702)
+.+++.
T Consensus 360 ~~i~~~ 365 (368)
T 1mda_H 360 ESLSVQ 365 (368)
T ss_dssp CEEECC
T ss_pred CEEEee
Confidence 455444
No 313
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=2.6e-11 Score=103.05 Aligned_cols=73 Identities=19% Similarity=0.381 Sum_probs=63.2
Q ss_pred CcEEEECCCC-CCChhhHH----HhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFE----KLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~----~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
++.|||+||| .+++++++ .+|+.+|+ .+|.++. +|++||||||+|.+.++|..|++.|||..+.++ .++|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr-~l~V 104 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN-PLVI 104 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS-CCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC-EEEE
Confidence 6789999999 89999876 68998888 3666653 789999999999999999999999999999988 7777
Q ss_pred Eec
Q 005315 133 NMF 135 (702)
Q Consensus 133 ~~~ 135 (702)
...
T Consensus 105 ~~a 107 (127)
T 2a3j_A 105 TFS 107 (127)
T ss_dssp EEC
T ss_pred EEc
Confidence 653
No 314
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=6.1e-11 Score=97.79 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=66.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|.++|+.+++ ..+.|+.|+ +.++|||||+|.+.++|..|++.|||..++++ .+.|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a 90 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR-KIEVNNA 90 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTE-ECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCE-EEEEEEc
Confidence 5899999999 9999999999999988 588999986 34999999999999999999999999999877 7777653
No 315
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.18 E-value=1.1e-11 Score=102.01 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=65.4
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccc-cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKED-GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~-~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++|+++|+.++.. . .++.|..+|+++|||||+|.+.++|.+|++ |||..++++ .+.|..
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~-~l~V~~ 91 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN-EIKLEK 91 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB-CCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc-EEEEEE
Confidence 6799999999 99999999999988873 4 677787789999999999999999999999 999999976 777764
No 316
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.17 E-value=4.3e-08 Score=100.57 Aligned_cols=238 Identities=13% Similarity=0.114 Sum_probs=146.0
Q ss_pred EEc--CCCCcEEEEec--CCeEEEEecCCc----cccccee---e----ccCCeeEEEeCCCCCeEEEEeecCCCCCCCc
Q 005315 315 RWG--GGKDKYFAKLG--KNMISVYETESF----TLIDKKS---L----KVENVMDFSWSPTDPIISLFVPELGGGNQPA 379 (702)
Q Consensus 315 ~~s--~~dg~~la~~~--d~~i~v~d~~~~----~~~~~~~---~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~ 379 (702)
.++ + ++++|...+ ++.|.|+|+.+. ++..... + ....-..+..+|+| ++++ ......+++..
T Consensus 88 ~~~~~~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs-~~g~~~g~~~g 164 (462)
T 2ece_A 88 NGKPNI-ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYIS-ALGNEEGEGPG 164 (462)
T ss_dssp TCCTTC-CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEE-EEEETTSCSCC
T ss_pred ccCCCc-cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEE-cCCCcCCCCCC
Confidence 336 7 888888777 899999998644 2221110 0 11124567889999 4443 22222256678
Q ss_pred EEEEEecCCcceeeeeeecccc---cceeEEccCCCEEEEEEccc---ccccc-------cccccEEEEEEecCCcceeE
Q 005315 380 RVSLVQIPSKEELRQKNLFSVS---DCKMYWQSSGDYLAVKVDRY---TKTKK-------STYTGFELFRIKERDIPIEV 446 (702)
Q Consensus 380 ~i~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~g~~l~~~~~~~---~~~~~-------~~~~~~~l~~l~~~~~~~~~ 446 (702)
.|.+++..+.+.+......... ...+.|+|+++.+++..-.. ...++ .+...+.+|++... .....
T Consensus 165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~t 243 (462)
T 2ece_A 165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHS 243 (462)
T ss_dssp EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEE
T ss_pred eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeE
Confidence 8999999988877655432111 23467899999777763110 00000 12345788888753 33444
Q ss_pred EEecCCCCceeEEEE--eeCCcEEEEEEc-----CCCCCeEEEEEeecccCcCceEEEEE--cC----------------
Q 005315 447 LELDNKNDKIIAFAW--EPKGHRFAVIHG-----DSPRPDISFYSMRTAQHAGRVSKLTT--LK---------------- 501 (702)
Q Consensus 447 ~~l~~h~~~v~~~~~--sp~g~~l~~~~~-----d~~~~~v~i~d~~~~~~~~~~~~~~~--~~---------------- 501 (702)
+.+.........+.| +|+|+++++++. .. ++|.+|..+.+. +..... +.
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls--s~V~v~~~d~g~----~~~~~vIdi~~~~v~~~lp~~~~~f~ 317 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLS--SSIWLWFYEDGK----WNAEKVIEIPAEPLEGNLPEILKPFK 317 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCC--EEEEEEEEETTE----EEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCC--ceEEEEEecCCc----eeEEEEEeCCCccccccccccccccc
Confidence 555211223444545 999999888876 43 278777765422 112221 11
Q ss_pred --CCceeEEEEccCCCEEEEEeccCCCceEEEEECCC---cceeeecccC----------------ceeeeEECCCCCEE
Q 005315 502 --GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE---LETMATAEHF----------------MATDVEWDPTGRYV 560 (702)
Q Consensus 502 --~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~---~~~~~~~~~~----------------~i~~~~~spdg~~l 560 (702)
+.....|.+||||++|+++..+ .+.|.+||+.. .+++.....+ .-..+++||||++|
T Consensus 318 ~~~~~pa~I~lS~DGrfLYVSnrg--~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 318 AVPPLVTDIDISLDDKFLYLSLWG--IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp EECCCCCCEEECTTSCEEEEEETT--TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cCCCceeEEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 1235789999999999999874 58999999862 3444332222 35789999999999
Q ss_pred EEEE
Q 005315 561 ATAV 564 (702)
Q Consensus 561 ~t~s 564 (702)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9887
No 317
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.17 E-value=8.8e-12 Score=107.61 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=66.1
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-+..|||+||| .+++++|+++|+.++...+.|+.|+ +|+++|||||+|.++++|++|+ .+|+..++++ .+.|..
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR-~i~V~~ 119 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHR-YIELFL 119 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC-CCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCE-EEEEEE
Confidence 35789999999 9999999999999887789999998 5999999999999999999999 8899999877 555543
No 318
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.17 E-value=4.2e-11 Score=98.98 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=63.7
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccc-c-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIK-E-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~-~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|+++|+.+| + ..+.++. ++++|||||+|.+.++|++|++.|||..++++ .++|..-
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr-~i~V~~a 102 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGS-VITVERD 102 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTE-EEEEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCe-EEEEEEC
Confidence 5799999999 999999999999998 6 4666653 36899999999999999999999999999988 8888753
No 319
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.16 E-value=2.8e-11 Score=99.63 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=66.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
++.|||+||| .++++++.++|+.+|. ..+.|+.|+ +|+++|||||+|.+.++|..|+. ||..++++ .+.|....
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~-~l~v~~a~ 84 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK-KLKLGPAI 84 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE-ECEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE-EEEEEECC
Confidence 5799999999 9999999999999988 589999998 99999999999999999999999 88888876 66655433
No 320
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.16 E-value=4.2e-11 Score=97.35 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=63.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .++++++.++|+.+++ |.++ ..+|+++|||||+|.+.++|..|++.|||..++++ .+.|...
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~--v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a 88 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALE--IRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR-SVSLYYT 88 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEE--ECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE-EEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCc--EEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe-EEEEEEc
Confidence 6899999999 9999999999999887 4444 34899999999999999999999999999999887 7877653
No 321
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.16 E-value=2.8e-09 Score=109.08 Aligned_cols=288 Identities=8% Similarity=0.011 Sum_probs=162.8
Q ss_pred eEEEEeCCc----eEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeC----------Cc-eEEeecCcCccee
Q 005315 174 QFVIRSGTD----TEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWGGANTFNRL 238 (702)
Q Consensus 174 ~~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~~~~~~~~~ 238 (702)
.|+...+.+ ...+.+. .+.+.+..+.-...+ .+.+||||++|+++.. ++ |.+||.. +++.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~-~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~-T~~vv 109 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCA-GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV-TFLPI 109 (368)
T ss_dssp EEEEECTTTCSSEEEEEEET-TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT-TCCEE
T ss_pred EEEECCccCCccceEEEEEC-CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC-CCCEE
Confidence 445444433 3335555 456666655443445 7999999999998862 33 8899999 88888
Q ss_pred eeecCC---------CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE--EEccCCcEEeeccCCCcccccCCCCCCC
Q 005315 239 MRYAHP---------QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI--FDVRTGKVMRDFKGSADEFAVGGTGGVA 307 (702)
Q Consensus 239 ~~~~~~---------~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v--wd~~~g~~~~~~~~~~~~~~~~~~~~~~ 307 (702)
.++..+ ....++|||||++|+++...+ ...|.+ +|+.+ ++.+.....
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~--------~~~v~V~~iD~~t---v~~i~v~~~----------- 167 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS--------SAAAGLSVPGASD---DQLTKSASC----------- 167 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS--------SCEEEEEETTTEE---EEEEECSSC-----------
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCC--------CCeEEEEEEchhh---ceEEECCCc-----------
Confidence 887532 367899999999999886420 046778 99877 444432211
Q ss_pred CcccceEEEcCCCC--cEEEEecCCeEEEEecCC-----cccccce--eeccCCeeEEEeCCCCCeEEEEeecCCCCCCC
Q 005315 308 GVSWPVFRWGGGKD--KYFAKLGKNMISVYETES-----FTLIDKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQP 378 (702)
Q Consensus 308 ~~~w~~~~~s~~dg--~~la~~~d~~i~v~d~~~-----~~~~~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 378 (702)
+...| ++ .|++.+.++.+.+.++.+ ++..... .+..+.-.. . ++++..+++ .+.
T Consensus 168 ------~~~~p-~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~-----vs~--- 230 (368)
T 1mda_H 168 ------FHIHP-GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVW-----AVA--- 230 (368)
T ss_dssp ------CCCEE-EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEEE-----CBS---
T ss_pred ------eEEcc-CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEEE-----EcC---
Confidence 11233 43 334333478887788776 4433211 011111011 3 566666555 222
Q ss_pred cEEEEEecCCcc--eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005315 379 ARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 456 (702)
Q Consensus 379 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 456 (702)
..++.++..... .+....+.........| . ....
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~-----------------------------------------~---p~g~ 266 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGRKADNF-----------------------------------------R---SAGF 266 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTE-----------------------------------------E---ECSS
T ss_pred CEEEEEECCCCcceEEEEEEecccccccccc-----------------------------------------c---cCcc
Confidence 345555543211 11000000000000000 0 1111
Q ss_pred eEEEEeeCCcEEEEEEc-C-CC----CCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceE
Q 005315 457 IAFAWEPKGHRFAVIHG-D-SP----RPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQL 529 (702)
Q Consensus 457 ~~~~~sp~g~~l~~~~~-d-~~----~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v 529 (702)
..++++|+|++++++.. . +. ...+.++|+.+.+ .+.++. +.....++|+|||++++++.... ++.|
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~------vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~-~~~V 339 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ------TSGPISNGHDSDAIIAAQDGASDNYANSAG-TEVL 339 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC------EEECCEEEEEECEEEECCSSSCEEEEEETT-TTEE
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe------EEEEEECCCCcceEEECCCCCEEEEEccCC-CCeE
Confidence 22578999988887643 2 10 0156699997654 555555 23578999999998655554311 7999
Q ss_pred EEEECCCcceeeeccc-CceeeeEECC
Q 005315 530 EFYNVDELETMATAEH-FMATDVEWDP 555 (702)
Q Consensus 530 ~i~d~~~~~~~~~~~~-~~i~~~~~sp 555 (702)
.++|+.+++.+.+... .....+++.+
T Consensus 340 sVID~~t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred EEEECCCCcEEEEEECCCCCCEEEeec
Confidence 9999999999887543 3344555543
No 322
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.16 E-value=1e-08 Score=101.37 Aligned_cols=188 Identities=15% Similarity=0.136 Sum_probs=131.0
Q ss_pred EEEEeCCceEEEecCCCCCCCcccccCCC-cccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCC---CeeEEE
Q 005315 175 FVIRSGTDTEVLWNDARHLKPEPVYKRSY-WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP---QVKLID 250 (702)
Q Consensus 175 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~---~v~~i~ 250 (702)
+++..+++.+.+|+. .+++..-.+..+. ..+.+++++|+|++|+ ...++|..||.. ++.+.++..+ .+.++.
T Consensus 8 lv~~~~~~~v~~~d~-~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~--G~~~W~~~~~~~~~~~~~~ 83 (276)
T 3no2_A 8 LVGGSGWNKIAIINK-DTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRD--GRELWNIAAPAGCEMQTAR 83 (276)
T ss_dssp EEECTTCSEEEEEET-TTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTT--SCEEEEEECCTTCEEEEEE
T ss_pred EEeeCCCCEEEEEEC-CCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCC--CCEEEEEcCCCCccccccE
Confidence 334445666678886 5677766676665 4688999999999999 445568899985 4555666432 488999
Q ss_pred ecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-
Q 005315 251 FSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 328 (702)
Q Consensus 251 fSpdg~~l~t~s~-d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~- 328 (702)
++|+|++|++.+. . +.|..+|. +|+.+..+....... ..... ...+...+ +|+++++..
T Consensus 84 ~~~dG~~lv~~~~~~----------~~v~~vd~-~Gk~l~~~~~~~~~~-----~~~~~--~~~v~~~~-~G~~lv~~~~ 144 (276)
T 3no2_A 84 ILPDGNALVAWCGHP----------STILEVNM-KGEVLSKTEFETGIE-----RPHAQ--FRQINKNK-KGNYLVPLFA 144 (276)
T ss_dssp ECTTSCEEEEEESTT----------EEEEEECT-TSCEEEEEEECCSCS-----SGGGS--CSCCEECT-TSCEEEEETT
T ss_pred ECCCCCEEEEecCCC----------CEEEEEeC-CCCEEEEEeccCCCC-----ccccc--ccCceECC-CCCEEEEecC
Confidence 9999999999887 6 77888884 898887775322100 00000 11357789 999999888
Q ss_pred CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee
Q 005315 329 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 394 (702)
Q Consensus 329 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 394 (702)
++.|..||.. ++.+.+.... ....++...++|+++++ ++. ..+|..++..+.+.+..
T Consensus 145 ~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~-----~~~--~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 145 TSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVA-----CGD--AHCFVQLNLESNRIVRR 201 (276)
T ss_dssp TTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEE-----CBT--TSEEEEECTTTCCEEEE
T ss_pred CCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEE-----eCC--CCeEEEEeCcCCcEEEE
Confidence 8999999988 8887766443 34567788899998886 333 34677777666665443
No 323
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.16 E-value=5.7e-08 Score=97.99 Aligned_cols=244 Identities=8% Similarity=0.018 Sum_probs=143.3
Q ss_pred ccceEEECCCCcEEEE-------EeC-CceEEeecCcCcceee-ee-----cCCCeeEEEecCC-CCEEEEEcCCCCCCC
Q 005315 205 TESFVQWSPLGTYLAT-------VHR-QGAAVWGGANTFNRLM-RY-----AHPQVKLIDFSPG-EKYLVTYSSHEPSNP 269 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat-------~~~-~~i~iw~~~~~~~~~~-~~-----~~~~v~~i~fSpd-g~~l~t~s~d~~~~~ 269 (702)
...+++|+++|+++++ ... .+|.+|+.. +++... .. ....+.+++++++ |+.+++...
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------ 91 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK-TGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------ 91 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT-TCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC-CCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------
Confidence 4568999999988877 344 448899976 444321 11 1245899999999 775655543
Q ss_pred cCCCccEEEEEEccCCcEEee-ccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C---------------CeE
Q 005315 270 RDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K---------------NMI 332 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d---------------~~i 332 (702)
..|.+||.. ++.... ........ ... ...+.+++ +|+++++.. + +.|
T Consensus 92 -----~~l~~~d~~-g~~~~~~~~~~~~~~-------~~~--~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 92 -----LGLLVVQTD-GTFEEIAKKDSEGRR-------MQG--CNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp -----TEEEEEETT-SCEEECCSBCTTSCB-------CBC--CCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred -----CCEEEEeCC-CCEEEEEeccCCCcc-------ccC--CcCEEECC-CCCEEEEecCcccccccccccccCCCCeE
Confidence 358899987 765433 22111000 000 11689999 998777665 4 466
Q ss_pred EEEecCCcccccceeeccCCeeEEEeC----CCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEc
Q 005315 333 SVYETESFTLIDKKSLKVENVMDFSWS----PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 408 (702)
Q Consensus 333 ~v~d~~~~~~~~~~~~~~~~v~~~~~s----p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 408 (702)
..|+.. ++.. ...........++|+ |+++.|.+. ......|+.|+...
T Consensus 156 ~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~------~~~~~~i~~~~~~~-------------------- 207 (314)
T 1pjx_A 156 YCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVA------ETPTKKLWSYDIKG-------------------- 207 (314)
T ss_dssp EEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEE------ETTTTEEEEEEEEE--------------------
T ss_pred EEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEE------ECCCCeEEEEECCC--------------------
Confidence 666654 3322 111223346778888 888655441 11223454444210
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC-CceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeec
Q 005315 409 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN-DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 487 (702)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~-~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 487 (702)
+|.... ..++ ..+..+. ..+..++++++|+.+++...++ .|.+|+..+
T Consensus 208 -~g~~~~----------------~~~~-----------~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~---~i~~~d~~~ 256 (314)
T 1pjx_A 208 -PAKIEN----------------KKVW-----------GHIPGTHEGGADGMDFDEDNNLLVANWGSS---HIEVFGPDG 256 (314)
T ss_dssp -TTEEEE----------------EEEE-----------EECCCCSSCEEEEEEEBTTCCEEEEEETTT---EEEEECTTC
T ss_pred -CCcccc----------------ceEE-----------EECCCCCCCCCCceEECCCCCEEEEEcCCC---EEEEEcCCC
Confidence 010000 0000 1121222 5567899999998877776666 899999864
Q ss_pred ccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCC
Q 005315 488 AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 536 (702)
Q Consensus 488 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~ 536 (702)
+... .....+...+.+++|+|+|+.|++++.. ++.|..|++..
T Consensus 257 g~~~----~~~~~~~~~~~~i~~~~dg~~l~v~~~~--~~~l~~~~~~~ 299 (314)
T 1pjx_A 257 GQPK----MRIRCPFEKPSNLHFKPQTKTIFVTEHE--NNAVWKFEWQR 299 (314)
T ss_dssp BSCS----EEEECSSSCEEEEEECTTSSEEEEEETT--TTEEEEEECSS
T ss_pred CcEe----EEEeCCCCCceeEEECCCCCEEEEEeCC--CCeEEEEeCCC
Confidence 4321 2223344568899999999977666531 57899999874
No 324
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.3e-11 Score=102.76 Aligned_cols=78 Identities=23% Similarity=0.267 Sum_probs=65.7
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhccccc-cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKED-GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~~-~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-++.|||+||| .+++++|.++|+.++.. .+.++.+..+|+++|||||+|.+.++|..|++.|||..++++ .+.|...
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~-~l~v~~a 102 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK-ILVIEFG 102 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC-BCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc-EEEEEEc
Confidence 36899999999 99999999999988772 333444444899999999999999999999999999999876 7777753
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 103 ~ 103 (115)
T 2cpx_A 103 K 103 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 325
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.14 E-value=8e-11 Score=107.00 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=70.8
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.-++.|||+||| .+++++|..+|+.+++ ..+.|+.|+ +|+++|||||+|.+.++|..|++.|||..++++ .+.|..
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr-~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR-PMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS-BCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE-EEEEEE
Confidence 346899999999 9999999999999988 589999998 999999999999999999999999999999876 777765
Q ss_pred cc
Q 005315 135 FD 136 (702)
Q Consensus 135 ~~ 136 (702)
..
T Consensus 164 a~ 165 (177)
T 2f3j_A 164 VA 165 (177)
T ss_dssp ES
T ss_pred ec
Confidence 43
No 326
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=7.7e-11 Score=95.87 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=65.4
Q ss_pred cCCCCcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 55 ESGFGNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 55 ~~~~~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.....+.|||+||| .+++++++++|+.++...+.++. ++++|||||+|.+.++|..|++.|||..++++ .+.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD-TLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS-CCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCc-EEEEE
Confidence 34457899999999 99999999999999885455553 57899999999999999999999999999877 67776
Q ss_pred ec
Q 005315 134 MF 135 (702)
Q Consensus 134 ~~ 135 (702)
..
T Consensus 90 ~a 91 (97)
T 2e5j_A 90 LA 91 (97)
T ss_dssp EC
T ss_pred Ec
Confidence 53
No 327
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.14 E-value=5.2e-08 Score=97.62 Aligned_cols=232 Identities=7% Similarity=0.017 Sum_probs=143.3
Q ss_pred eEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 313 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
.+.|++ ++..|.... .+.|..|+..++... .. .....+.+++++|+|++++. . ...|+.++..+.+
T Consensus 17 gp~w~~-~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-------~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 17 SPVWEE-VSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-------I--GTKFCALNWKEQS 84 (297)
T ss_dssp EEEEET-TTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-------E--TTEEEEEETTTTE
T ss_pred CCeEEC-CCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-------E--CCeEEEEECCCCc
Confidence 578999 776555554 889999998876542 11 12346889999999996654 1 1367788876544
Q ss_pred eeeeeeec----ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCc
Q 005315 391 ELRQKNLF----SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH 466 (702)
Q Consensus 391 ~~~~~~~~----~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~ 466 (702)
........ ......+.++|+|++.+..................+|.+...+.... +..+....+.++|+|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EEEEESBEEEEEECTTSC
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---EeeccccccceEEcCCCC
Confidence 22111111 11123467899999655443321100000012246888875433221 112234567899999999
Q ss_pred EEEEEEc-CCCCCeEEEEEeecccCcC-ceEEEEEcCC--CceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee
Q 005315 467 RFAVIHG-DSPRPDISFYSMRTAQHAG-RVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 542 (702)
Q Consensus 467 ~l~~~~~-d~~~~~v~i~d~~~~~~~~-~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~ 542 (702)
.++++.. .+ .|..|++....+.. ....+..+.. .....++++++|++.++... .+.|..||..+++.+..
T Consensus 162 ~lyv~~~~~~---~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 162 IFYYIDSLSY---SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---GGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp EEEEEEGGGT---EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET---TTEEEEECTTTCCEEEE
T ss_pred EEEEecCCCC---cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC---CCEEEEEcCCCceEEEE
Confidence 8877665 34 89999984222110 1123333432 34678999999987766654 67899999998887765
Q ss_pred c--ccCceeeeEEC-CCCCEEEEEEe
Q 005315 543 A--EHFMATDVEWD-PTGRYVATAVT 565 (702)
Q Consensus 543 ~--~~~~i~~~~~s-pdg~~l~t~s~ 565 (702)
. +...+++++|+ |+++.|+.++.
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 3 33578999998 89998877776
No 328
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.2e-10 Score=97.01 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=65.3
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.+.|||+||| .+++++|.++|+.+++ ..+.|+.+ ++++|||||+|.+.++|..|++.|||..++++ .|.|...
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~V~~a 96 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY-RLRVEFP 96 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE-ECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe-EEEEEEc
Confidence 36899999999 9999999999999988 46777654 67999999999999999999999999999877 7777653
No 329
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=6.4e-11 Score=99.51 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=62.5
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCC---CceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPET---QKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~---~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
++.|||+||| .+++++|+++|+.+|+..+.++.++.+ |+++|||||+|.++++|++|++.+++ ++++ .+.+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~-~~~~~ 83 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGK-LYLCV 83 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTE-EEEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCc-EEEec
Confidence 5789999999 999999999999999966899999877 79999999999999999999999943 4554 44443
No 330
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=8.2e-11 Score=97.91 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=61.2
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCC--CccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG--YKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~--~~~~~~h~~~v~~ 134 (702)
+++|||+||| .+++++|+.+|+.+|+ .++.|+.+ ||||||+|.+.++|..|++.+++ ..++++ ++.|..
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr-~l~V~~ 103 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ-PIYIQF 103 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB-CCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCe-EEEEEE
Confidence 6899999999 9999999999999998 58888865 79999999999999999999874 578777 777765
No 331
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.13 E-value=8.6e-11 Score=99.10 Aligned_cols=76 Identities=16% Similarity=0.328 Sum_probs=67.3
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-++.|||+||| .++++++..+|+.+|. ..+.|+.| +.++|||||+|.+.++|..|+..|||..++++ .+.|...
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR-YLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC-BCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe-EEEEEEe
Confidence 46899999999 9999999999999988 57888875 56799999999999999999999999999876 7887765
Q ss_pred cC
Q 005315 136 DD 137 (702)
Q Consensus 136 ~d 137 (702)
..
T Consensus 83 ~~ 84 (115)
T 3lqv_A 83 NA 84 (115)
T ss_dssp CH
T ss_pred cC
Confidence 43
No 332
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.74 E-value=4.7e-12 Score=107.06 Aligned_cols=76 Identities=22% Similarity=0.198 Sum_probs=68.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccc-c--------EEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKED-G--------LWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 128 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~-~--------~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h 128 (702)
.+.|||+||| .++++++.++|+.++.. . +.|+.|+.+|+++|||||+|.+.++|..|++.|||..++++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~- 85 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN- 85 (116)
Confidence 5789999999 99999999999998883 4 88999988999999999999999999999999999999877
Q ss_pred EEEEEec
Q 005315 129 IFAVNMF 135 (702)
Q Consensus 129 ~~~v~~~ 135 (702)
.++|...
T Consensus 86 ~l~V~~a 92 (116)
T 2lcw_A 86 PIKVSFA 92 (116)
Confidence 7776653
No 333
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.13 E-value=3.4e-08 Score=99.00 Aligned_cols=230 Identities=12% Similarity=0.108 Sum_probs=134.0
Q ss_pred ceEEECCCCcEEEEEe-CCc-eEEeecCcCcceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005315 207 SFVQWSPLGTYLATVH-RQG-AAVWGGANTFNRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~-~~~-i~iw~~~~~~~~~~~~~~-~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~ 283 (702)
-++.|+|++..|+... ..+ |..|+.. +... ..+.. ..+.+++++|+|+++++. . ..|.+||..
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~-~~~~-~~~~~~~~~~~i~~~~dG~l~v~~--~----------~~l~~~d~~ 81 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSF-TKQV-QRVTMDAPVSSVALRQSGGYVATI--G----------TKFCALNWK 81 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETT-TCCE-EEEECSSCEEEEEEBTTSSEEEEE--T----------TEEEEEETT
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECC-CCcE-EEEeCCCceEEEEECCCCCEEEEE--C----------CeEEEEECC
Confidence 3789999765555544 444 8899988 4443 23333 359999999999966554 3 468999988
Q ss_pred CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C---------CeEEEEecCCcccccceeeccCCe
Q 005315 284 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K---------NMISVYETESFTLIDKKSLKVENV 353 (702)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d---------~~i~v~d~~~~~~~~~~~~~~~~v 353 (702)
+++............ ......+.++| +|+++++.. . ....||.+.....+..........
T Consensus 82 ~g~~~~~~~~~~~~~---------~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~p 151 (297)
T 3g4e_A 82 EQSAVVLATVDNDKK---------NNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDIS 151 (297)
T ss_dssp TTEEEEEEECCTTCS---------SEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBE
T ss_pred CCcEEEEEecCCCCC---------CCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccc
Confidence 776533222211100 00012688999 999776543 2 234555544222221222233446
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEE
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 433 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 433 (702)
..++|+|+++.|.+. .....+|+.++... .+|... . ..
T Consensus 152 ngi~~spdg~~lyv~------~~~~~~i~~~~~d~--------------------~~G~~~----~------------~~ 189 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYI------DSLSYSVDAFDYDL--------------------QTGQIS----N------------RR 189 (297)
T ss_dssp EEEEECTTSCEEEEE------EGGGTEEEEEEECT--------------------TTCCEE----E------------EE
T ss_pred cceEEcCCCCEEEEe------cCCCCcEEEEeccC--------------------CCCccc----C------------cE
Confidence 789999999877652 22234566665420 111100 0 00
Q ss_pred EEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE--cCCCceeEEEEc
Q 005315 434 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT--LKGKQANALFWS 511 (702)
Q Consensus 434 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~v~~~~~s 511 (702)
++ ..+..+...+..++++++|+..++....+ .|..|+..++. .+.. ++...+++++|+
T Consensus 190 ~~-----------~~~~~~~~~p~g~~~d~~G~lwva~~~~~---~v~~~d~~tG~------~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 190 SV-----------YKLEKEEQIPDGMCIDAEGKLWVACYNGG---RVIRLDPVTGK------RLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EE-----------EECCGGGCEEEEEEEBTTSCEEEEEETTT---EEEEECTTTCC------EEEEEECSSSBEEEEEEE
T ss_pred EE-----------EECCCCCCCCCeeEECCCCCEEEEEcCCC---EEEEEcCCCce------EEEEEECCCCCceEEEEe
Confidence 00 01111234567789999997776666656 79999986544 3333 334578999998
Q ss_pred -cCCCEEEEEec
Q 005315 512 -PSGRFIVLAGL 522 (702)
Q Consensus 512 -pdg~~l~~~~~ 522 (702)
|+++.|++++.
T Consensus 250 g~d~~~L~vt~~ 261 (297)
T 3g4e_A 250 GKNYSEMYVTCA 261 (297)
T ss_dssp SGGGCEEEEEEB
T ss_pred CCCCCEEEEEcC
Confidence 89998877764
No 334
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.1e-10 Score=94.78 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=60.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhC--CCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN--GYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~--~~~~~~~h~~~v~~ 134 (702)
+++|||+||| .+++++|+.+|+.+|+ ..+.|+.+ ||||||+|.+.++|..|++.++ +..++++ .+.|..
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr-~l~V~~ 87 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQ-PIYIQY 87 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTE-ECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCc-EEEEEE
Confidence 6799999999 9999999999999998 57888764 8999999999999999999774 5668777 777765
Q ss_pred c
Q 005315 135 F 135 (702)
Q Consensus 135 ~ 135 (702)
-
T Consensus 88 a 88 (101)
T 2cq1_A 88 S 88 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 335
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.12 E-value=2.8e-07 Score=92.01 Aligned_cols=257 Identities=11% Similarity=0.019 Sum_probs=156.6
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCC--cccccCCCCCCCCcccceEEEcCCCC
Q 005315 244 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 244 ~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
..+.+++++++|+..++...+ +.|.+||.. ++... +.... ... + .+.+.+ +|
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~----------~~v~~~~~~-~~~~~-~~~~~~~~~~------------~-~i~~~~-~g 73 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKA----------NKISSLDQS-GRIKE-FEVPTPDAKV------------M-CLIVSS-LG 73 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTT----------TEEEEECTT-SCEEE-EECSSTTCCE------------E-EEEECT-TS
T ss_pred CCcceeeECCCCCEEEEcCCC----------CeEEEECCC-CceEE-EECCCCCCcc------------e-eEEECC-CC
Confidence 358899999999988877666 789999976 65443 22111 111 1 678889 99
Q ss_pred cEEEEec-CCeEEEEecCCcccccceee--ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee-ee
Q 005315 322 KYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NL 397 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 397 (702)
.++++.. ++.|..|+.. ++.. .... ....+.++++.|+|.+++. ......|..++.. .+..... ..
T Consensus 74 ~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~-------~~~~~~i~~~~~~-g~~~~~~~~~ 143 (300)
T 2qc5_A 74 DIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFT-------QLNGDRIGKLTAD-GTIYEYDLPN 143 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEE-------ETTTTEEEEECTT-SCEEEEECSS
T ss_pred CEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEE-------ccCCCeEEEECCC-CCEEEccCCC
Confidence 8777766 7889999977 4432 1211 2245889999999987665 2223467777765 3322111 10
Q ss_pred cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCC
Q 005315 398 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 477 (702)
Q Consensus 398 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 477 (702)
.......+.+.++|+. .++..... .++.++..+ ......++.+...+..++++++|..+++....+
T Consensus 144 ~~~~~~~i~~d~~g~l-~v~~~~~~----------~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-- 209 (300)
T 2qc5_A 144 KGSYPAFITLGSDNAL-WFTENQNN----------SIGRITNTG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN-- 209 (300)
T ss_dssp TTCCEEEEEECTTSSE-EEEETTTT----------EEEEECTTC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTT--
T ss_pred CCCCceeEEECCCCCE-EEEecCCC----------eEEEECCCC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCC--
Confidence 1223345678888884 44332211 344444322 222233434456788999999997665544444
Q ss_pred CeEEEEEeecccCcCceEEEEEcC--CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee---cccCceeeeE
Q 005315 478 PDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVE 552 (702)
Q Consensus 478 ~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~---~~~~~i~~~~ 552 (702)
.|..|+. ++. ... ..+. ...+..++++++|+..++... ++.|..|+.. ++.... .....+.+++
T Consensus 210 -~i~~~~~-~g~----~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~---~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 278 (300)
T 2qc5_A 210 -KIGRITT-TGE----ISE-YDIPTPNARPHAITAGKNSEIWFTEWG---ANQIGRITND-NTIQEYQLQTENAEPHGIT 278 (300)
T ss_dssp -EEEEECT-TCC----EEE-EECSSTTCCEEEEEECSTTCEEEEETT---TTEEEEECTT-SCEEEEECCSTTCCCCCEE
T ss_pred -EEEEEcC-CCc----EEE-EECCCCCCCceEEEECCCCCEEEeccC---CCeEEEECCC-CcEEEEECCccCCccceeE
Confidence 7888887 222 112 1222 235788999999986665543 6889999984 433321 1235678899
Q ss_pred ECCCCCEEE
Q 005315 553 WDPTGRYVA 561 (702)
Q Consensus 553 ~spdg~~l~ 561 (702)
++++|+..+
T Consensus 279 ~~~~g~l~v 287 (300)
T 2qc5_A 279 FGKDGSVWF 287 (300)
T ss_dssp ECTTSCEEE
T ss_pred eCCCCCEEE
Confidence 999998443
No 336
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.11 E-value=1.6e-10 Score=109.44 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=68.7
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++|.++|+.+|+ .++.|+.|+.+|+++|||||+|.+.++|..|++.+||..+.++ .+++..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~-~i~~~~ 91 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK-PVRIMW 91 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc-cccccc
Confidence 4689999999 9999999999999998 5899999999999999999999999999999999999999877 555543
No 337
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.11 E-value=1.7e-10 Score=94.85 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=62.0
Q ss_pred CCcEEEECCCC-C-CChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCC--CccCCeeEEEE
Q 005315 58 FGNIIVVDNLP-V-VPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG--YKLDRAHIFAV 132 (702)
Q Consensus 58 ~~~~~~v~~lp-~-~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~--~~~~~~h~~~v 132 (702)
-+++|||+||| . +++++|+.||+.+|+ .++.|+ ++||||||+|.+.++|..|++.||+ ..++++ ++.|
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr-~l~V 96 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR-CVKV 96 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS-CCEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhccCCceECCE-EEEE
Confidence 47899999999 7 999999999999998 578886 3579999999999999999998865 447776 7777
Q ss_pred EeccC
Q 005315 133 NMFDD 137 (702)
Q Consensus 133 ~~~~d 137 (702)
..-..
T Consensus 97 ~~a~~ 101 (112)
T 1x4f_A 97 DLSEK 101 (112)
T ss_dssp EEECS
T ss_pred EECcc
Confidence 76443
No 338
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.11 E-value=2.6e-07 Score=92.18 Aligned_cols=269 Identities=11% Similarity=0.024 Sum_probs=161.9
Q ss_pred CcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005315 203 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 279 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v 279 (702)
.....+++++++|+..++...++ |.+|+.. ......... ...+.+++++++|+..++.... +.|.+
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~----------~~v~~ 87 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA----------NKIGK 87 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT----------TEEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCC----------CeEEE
Confidence 34667899999999877776544 8899877 222222222 2358999999999988877666 78999
Q ss_pred EEccCCcEEeeccCC--CcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccce-eeccCCeeE
Q 005315 280 FDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-SLKVENVMD 355 (702)
Q Consensus 280 wd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~-~~~~~~v~~ 355 (702)
||.. ++.. .+... .... ..+.+.+ +|+++++.. ++.|..|+.. ++..... ......+..
T Consensus 88 ~d~~-g~~~-~~~~~~~~~~~-------------~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 88 LSKK-GGFT-EYPLPQPDSGP-------------YGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp ECTT-SCEE-EEECSSTTCCE-------------EEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred ECCC-CCeE-EecCCCCCCCC-------------ccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 9976 6643 23221 1111 1678889 998877766 7899999887 4433111 112345889
Q ss_pred EEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeee--cccccceeEEccCCCEEEEEEcccccccccccccEE
Q 005315 356 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 433 (702)
Q Consensus 356 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 433 (702)
+++.|+|++.+. ......|+.++. ..+... ... .......+.++++|...++....+ .
T Consensus 151 i~~d~~g~l~v~-------~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-----------~ 210 (300)
T 2qc5_A 151 ITLGSDNALWFT-------ENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGN-----------K 210 (300)
T ss_dssp EEECTTSSEEEE-------ETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTT-----------E
T ss_pred EEECCCCCEEEE-------ecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCC-----------E
Confidence 999999985554 223346777776 333221 111 112234567788886544432222 2
Q ss_pred EEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeEEEEc
Q 005315 434 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWS 511 (702)
Q Consensus 434 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~s 511 (702)
++.+...+ ......++.+...+.+++++++|+.+++...++ .|..|+. ++. .. ...+. ...+.+++++
T Consensus 211 i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~---~i~~~~~-~g~----~~-~~~~~~~~~~~~~i~~~ 280 (300)
T 2qc5_A 211 IGRITTTG-EISEYDIPTPNARPHAITAGKNSEIWFTEWGAN---QIGRITN-DNT----IQ-EYQLQTENAEPHGITFG 280 (300)
T ss_dssp EEEECTTC-CEEEEECSSTTCCEEEEEECSTTCEEEEETTTT---EEEEECT-TSC----EE-EEECCSTTCCCCCEEEC
T ss_pred EEEEcCCC-cEEEEECCCCCCCceEEEECCCCCEEEeccCCC---eEEEECC-CCc----EE-EEECCccCCccceeEeC
Confidence 33333322 222233434456788999999998555544445 7888887 222 11 12222 2357889999
Q ss_pred cCCCEEEEEeccCCCceEEEEEC
Q 005315 512 PSGRFIVLAGLKGFNGQLEFYNV 534 (702)
Q Consensus 512 pdg~~l~~~~~~~~dg~v~i~d~ 534 (702)
++|+.++ ++. . .|..++.
T Consensus 281 ~~g~l~v-~~~---~-~i~~~~p 298 (300)
T 2qc5_A 281 KDGSVWF-ALK---C-KIGKLNL 298 (300)
T ss_dssp TTSCEEE-ECS---S-EEEEEEE
T ss_pred CCCCEEE-Ecc---C-ceEEeCC
Confidence 9998544 443 4 6666664
No 339
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=1.1e-10 Score=95.48 Aligned_cols=69 Identities=10% Similarity=-0.012 Sum_probs=59.5
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCc--cCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK--LDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~--~~~~h~~~v~~ 134 (702)
+++|||+||| .+++++|+.+|+.+|+ ..+.|+.+ ||||||+|.+.++|..|++.||+.. ++++ .+.|..
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr-~l~V~~ 87 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ-QAFFNY 87 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS-BCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE-EEEEEE
Confidence 5799999999 9999999999999998 47777753 7999999999999999999987754 6666 677664
No 340
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=1.1e-10 Score=95.74 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=64.7
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEeccC
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDD 137 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~d 137 (702)
+.|||+||| .++++++.++|+.+++ ..+.|+.| ++|||||+|.+.++|..|++.|||..++++ .+.|.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGS-RVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSC-CCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCc-EEEEEEccC
Confidence 579999999 9999999999999988 58889876 899999999999999999999999999887 677776443
No 341
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.09 E-value=1.1e-10 Score=97.28 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=61.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
++.|||+||| .+++++|+++|+.+|. ..+.|+. ++|||||+|.+.++|+.|++.|||..++++ .+.|...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~V~~a 81 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV-PLYLEWA 81 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS-BCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe-EEEEEEC
Confidence 5799999999 9999999999999988 4677763 679999999999999999999999999987 6666543
No 342
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.09 E-value=1.3e-10 Score=92.43 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=61.4
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||+||| .+++++++++|+.+ + ..+.++ +++|||||+|.++++|..|++.|||..++++ .++|..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~-~l~V~~ 74 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK-DLIVQL 74 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTE-EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCc-EEEEEE
Confidence 5789999999 99999999999988 5 567774 7899999999999999999999999999987 788765
No 343
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.09 E-value=7.6e-11 Score=96.06 Aligned_cols=74 Identities=14% Similarity=0.210 Sum_probs=65.3
Q ss_pred CCcEEEECCCC-CCChhhHH----HhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFE----KLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 131 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~----~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~ 131 (702)
-++.|||+||| .++++++. .+|+.+|. ..+.++. +|+++|||||+|.+.++|..|++.|||..++++ .+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~ 82 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK-PMR 82 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE-ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc-EEE
Confidence 46899999999 99999999 99999888 4677763 689999999999999999999999999999876 787
Q ss_pred EEec
Q 005315 132 VNMF 135 (702)
Q Consensus 132 v~~~ 135 (702)
|...
T Consensus 83 v~~a 86 (97)
T 1nu4_A 83 IQYA 86 (97)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7653
No 344
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.09 E-value=2.3e-10 Score=95.01 Aligned_cols=71 Identities=18% Similarity=0.131 Sum_probs=63.5
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCC-----eeEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR-----AHIF 130 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~-----~h~~ 130 (702)
-.+.|||+||| .+++++|.++|..+++ ..+.|+.| |||||+|.+.++|++|++.|||..+++ + .+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~-~i 85 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA-YI 85 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE-EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce-EE
Confidence 36899999999 9999999999999988 57888876 999999999999999999999999987 4 78
Q ss_pred EEEecc
Q 005315 131 AVNMFD 136 (702)
Q Consensus 131 ~v~~~~ 136 (702)
.|....
T Consensus 86 ~V~~a~ 91 (108)
T 1x4c_A 86 RVKVDG 91 (108)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 877644
No 345
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.08 E-value=2.9e-10 Score=103.31 Aligned_cols=75 Identities=33% Similarity=0.521 Sum_probs=69.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||+||| .++++++.++|+.+|+ .++.++.|+.+|+++|||||+|.++++|..|++.+||..+.++ .+.|..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-TIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc-eEEEEe
Confidence 4789999999 9999999999999988 5899999988999999999999999999999999999999876 777754
No 346
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.08 E-value=4.6e-10 Score=91.91 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=69.0
Q ss_pred CCcEEEECCCCCC------ChhhHHHhHhcccc-ccEEeecCCCC-CceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 005315 58 FGNIIVVDNLPVV------PKEKFEKLEGVIKE-DGLWMPVDPET-QKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 129 (702)
Q Consensus 58 ~~~~~~v~~lp~~------~~~~~~~l~~~~~~-~~~~~~~d~~~-~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~ 129 (702)
-+.+|++.||... .+++++.+|+.+|+ .++.|+.|+.+ ++++|||||+|.++++|.+|++.|||..++++ .
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr-~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR-V 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE-E
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc-E
Confidence 4679999999732 67889999999998 58999998654 68999999999999999999999999999988 8
Q ss_pred EEEEeccCcccc
Q 005315 130 FAVNMFDDFDKF 141 (702)
Q Consensus 130 ~~v~~~~d~~~~ 141 (702)
+.|..... ++|
T Consensus 86 i~v~~a~~-~~f 96 (105)
T 2pe8_A 86 VKACFYNL-DKF 96 (105)
T ss_dssp CEEEECCH-HHH
T ss_pred EEEEEcCH-HHh
Confidence 88876543 444
No 347
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.7e-10 Score=94.73 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=59.5
Q ss_pred CCcEEEE--CCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCcc----CCeeE
Q 005315 58 FGNIIVV--DNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL----DRAHI 129 (702)
Q Consensus 58 ~~~~~~v--~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~----~~~h~ 129 (702)
-.+.||| +||| .+++++|+++|+.+|+ ..+.||.+ ||||||+|.+.++|++|++.|||..+ ++..+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 3678999 8899 9999999999999998 47778742 79999999999999999999999977 23446
Q ss_pred EEEEe
Q 005315 130 FAVNM 134 (702)
Q Consensus 130 ~~v~~ 134 (702)
+.|.-
T Consensus 98 l~v~~ 102 (114)
T 2cq2_A 98 LYLNF 102 (114)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 66654
No 348
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=1.7e-10 Score=93.50 Aligned_cols=74 Identities=11% Similarity=0.096 Sum_probs=63.2
Q ss_pred CCcEEEECCCC--CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCc--cCCeeEEEE
Q 005315 58 FGNIIVVDNLP--VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK--LDRAHIFAV 132 (702)
Q Consensus 58 ~~~~~~v~~lp--~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~--~~~~h~~~v 132 (702)
-+++|||+||| .+++++|+.||+.+|+ .++.|+.| +|||||+|.+.++|..|++.||+.. ++++ ++.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr-~l~V 86 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGK-PVRV 86 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTE-ECEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCc-EEEE
Confidence 37899999999 5999999999999998 58888765 4899999999999999999999765 7777 7888
Q ss_pred EeccCc
Q 005315 133 NMFDDF 138 (702)
Q Consensus 133 ~~~~d~ 138 (702)
..-...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 765543
No 349
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.06 E-value=5.8e-08 Score=97.69 Aligned_cols=224 Identities=7% Similarity=0.015 Sum_probs=133.9
Q ss_pred cceEEECCCCcEEEEEe-CCc-eEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005315 206 ESFVQWSPLGTYLATVH-RQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~-~~~-i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~ 283 (702)
...+.|+|+|++|+..+ .++ |..|+.. ............+..++++|+|+.+++.... +.|.+|+..
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~----------~~v~~~~~~ 115 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGR----------RAITRSDAD 115 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTT----------TEEEEECTT
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCC----------CEEEEECCC
Confidence 45789999999555544 444 8889876 4333333344458999999999977766665 679999964
Q ss_pred CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEE----ec--------------CCeEEEEecCCcccccc
Q 005315 284 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK----LG--------------KNMISVYETESFTLIDK 345 (702)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~----~~--------------d~~i~v~d~~~~~~~~~ 345 (702)
|+.. .+........ ... ...+.+++ +|++.++ +. .+.|..|+..+++....
T Consensus 116 -g~~~-~~~~~~~~~~------~~~--~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 116 -GQAH-LLVGRYAGKR------LNS--PNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp -SCEE-EEECEETTEE------CSC--CCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred -CCEE-EEEeccCCCc------cCC--CCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 6532 2221110000 000 11578999 9998885 22 24577777666654322
Q ss_pred eeeccCCeeEEEeCCCCCeEEEEeecCCCCC----CCcEEEEEecCCcceeeeeeec----ccccceeEEccCCCEEEEE
Q 005315 346 KSLKVENVMDFSWSPTDPIISLFVPELGGGN----QPARVSLVQIPSKEELRQKNLF----SVSDCKMYWQSSGDYLAVK 417 (702)
Q Consensus 346 ~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~l~~~ 417 (702)
. .......++|+|+++.|.+. ... ....|+.++..... +.....+ ......+.+.++|+.. ++
T Consensus 185 -~-~~~~p~gl~~spdg~~lyv~-----~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~ 255 (305)
T 3dr2_A 185 -A-DLDHPNGLAFSPDEQTLYVS-----QTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SS 255 (305)
T ss_dssp -E-EESSEEEEEECTTSSEEEEE-----ECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-EC
T ss_pred -e-cCCCCcceEEcCCCCEEEEE-----ecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-Ee
Confidence 2 44557889999999977662 121 13578888765433 2211111 1222346778888843 33
Q ss_pred EcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCC
Q 005315 418 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 475 (702)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 475 (702)
..+ .|+.++..+.....+.+ ...+.+++|+|+++.|.+++.++
T Consensus 256 ~~~------------gv~~~~~~g~~~~~~~~---~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 256 SGT------------GVCVFDSDGQLLGHIPT---PGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CSS------------EEEEECTTSCEEEEEEC---SSCCCEEEECTTSCEEEEEETTE
T ss_pred cCC------------cEEEECCCCCEEEEEEC---CCceeEEEEeCCCCEEEEEcCCe
Confidence 221 23444444444444555 33588999999999888887754
No 350
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.06 E-value=7.7e-08 Score=100.89 Aligned_cols=234 Identities=9% Similarity=0.016 Sum_probs=140.5
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEE
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 324 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~l 324 (702)
....|+|+|+|+.+++...+ +.|++||..++.......... .++++|++ ++++|
T Consensus 132 ~P~~la~d~~g~lyv~d~~~----------~~I~~id~~~g~~~~~~~~~~---------------~~~ia~~~-~g~~l 185 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDD----------PRVRLISVDDNKVTTVHPGFK---------------GGKPAVTK-DKQRV 185 (409)
T ss_dssp CEEEEEECSTTEEEEEETTT----------TEEEEEETTTTEEEEEEETCC---------------BCBCEECT-TSSEE
T ss_pred CceEEEEeCCCCEEEEecCC----------CcEEEEECCCCEEEEeeccCC---------------CCceeEec-CCCcE
Confidence 47899999999977777766 789999987776654443311 11468999 99988
Q ss_pred EEec-CC--eEEEEecCCcccccce---ee-ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee---
Q 005315 325 AKLG-KN--MISVYETESFTLIDKK---SL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ--- 394 (702)
Q Consensus 325 a~~~-d~--~i~v~d~~~~~~~~~~---~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~--- 394 (702)
+.+. ++ .|.+++..++...... .. ....+.+++++|++..|.+ .+...+|+.++.........
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-------~d~~~~I~~~d~~~~~~~~~~~~ 258 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-------VDSNKNFGRFNVKTQEVTLIKQL 258 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-------ECTTCEEEEEETTTCCEEEEEEC
T ss_pred EEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-------EECCCcEEEEECCCCCEEEEecc
Confidence 7776 44 7888887654432111 01 3345788999996555554 23345788888765542111
Q ss_pred -eeeccccc-c-eeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC---------------CCce
Q 005315 395 -KNLFSVSD-C-KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK---------------NDKI 456 (702)
Q Consensus 395 -~~~~~~~~-~-~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h---------------~~~v 456 (702)
........ . .++|+|++..|++...... .|+.+...+. .. .+.++ -...
T Consensus 259 ~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~----------~I~~~~~~g~-~~--~~~g~~~~~g~~dg~~~~~~~~~P 325 (409)
T 3hrp_A 259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS----------SVYKITPDGE-CE--WFCGSATQKTVQDGLREEALFAQP 325 (409)
T ss_dssp CCCSCCCCSSCCEEEEETTTTEEEEEETTTT----------EEEEECTTCC-EE--EEEECTTCCSCBCEEGGGCBCSSE
T ss_pred cccCCCCCCccccEEEeCCCCEEEEEeCCCC----------EEEEEecCCC-EE--EEEeCCCCCCcCCCcccccEeCCC
Confidence 00011111 3 7889997666666544322 3444443332 11 11111 1347
Q ss_pred eEEEEeeCCcEEEEEE-cCCCCCeEEEEEeecccCcCceEEEEEcC--------------CCceeEEEEccCCCEEEEEe
Q 005315 457 IAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSKLTTLK--------------GKQANALFWSPSGRFIVLAG 521 (702)
Q Consensus 457 ~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--------------~~~v~~~~~spdg~~l~~~~ 521 (702)
..++++|+|+.+++-. .+. .|+.|++.++. ...+.... -.....++++|+|.++++-.
T Consensus 326 ~gia~d~dG~lyvad~~~~~---~I~~~~~~~G~----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~ 398 (409)
T 3hrp_A 326 NGMTVDEDGNFYIVDGFKGY---CLRKLDILDGY----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA 398 (409)
T ss_dssp EEEEECTTCCEEEEETTTTC---EEEEEETTTTE----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred eEEEEeCCCCEEEEeCCCCC---EEEEEECCCCE----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence 8899999998555544 444 89999864432 11221110 02367899999986666555
Q ss_pred ccCCCceEEEEEC
Q 005315 522 LKGFNGQLEFYNV 534 (702)
Q Consensus 522 ~~~~dg~v~i~d~ 534 (702)
. ++.|+.+++
T Consensus 399 ~---n~~Ir~i~~ 408 (409)
T 3hrp_A 399 W---GKAIRKYAV 408 (409)
T ss_dssp T---TCEEEEEEE
T ss_pred C---CCeEEEEEe
Confidence 4 677877765
No 351
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.05 E-value=3e-10 Score=103.37 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=69.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||+||| .++++++..+|+.+|+ .++.++.++.+|+++|||||+|.++++|..|++.+||..+.++ .+.|..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~l~v~~ 79 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK-RLKVSY 79 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc-EEEEEe
Confidence 5789999999 9999999999999988 5899999988999999999999999999999999999999877 777664
No 352
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.04 E-value=3.8e-10 Score=117.97 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=70.7
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.++|||+||| .++++.|..+|+.+|. ..|.|+.|..+|+++|||||+|.+.++|..|+..|||..|++. .|.|...
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr-~i~V~~a 179 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR-RVLVDVE 179 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE-EEEEEEe
Confidence 35799999999 9999999999999988 5899999988999999999999999999999999999999877 7877753
No 353
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=3.6e-10 Score=94.17 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=64.2
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.+.|||+||| .+++++|..+|+.+|+ ..+.|+.+ +|||||+|.+.++|..|++.|||..++++ .+.|...
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a 96 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGH-VVKCYWG 96 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCc-EEEEEec
Confidence 46899999999 9999999999999988 47888875 89999999999999999999999999977 7877753
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 97 ~ 97 (109)
T 1x4g_A 97 K 97 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 354
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.04 E-value=4.5e-10 Score=93.00 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=60.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .++++++.++|+.+|+ ..+.|+ +|||||+|.+.++|..|++.|||..++++ .+.|..
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~V~~ 99 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ-PLEVVY 99 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE-ECEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe-EEEEEE
Confidence 6899999999 9999999999999988 477776 89999999999999999999999999877 777764
No 355
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.04 E-value=2.4e-07 Score=95.01 Aligned_cols=243 Identities=12% Similarity=0.104 Sum_probs=141.3
Q ss_pred EEEec--CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----cEEeeccCCCcccccCCCCCCCCcccc-eEEEcCCC
Q 005315 248 LIDFS--PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGK 320 (702)
Q Consensus 248 ~i~fS--pdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~s~~d 320 (702)
+..++ +++++|+..+... ++|.|+|+.+. +..+++....-.. ..+..+| .+..+| +
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s---------~~I~viD~~t~p~~p~~~k~ie~~~~~~-------~~g~s~Ph~~~~~p-d 148 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRS---------SRIYIIDTKPNPREPKIIKVIEPEEVKK-------VSGYSRLHTVHCGP-D 148 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTT---------CCEEEEECCSCTTSCEEEEEECHHHHHH-------HHCEEEEEEEEECS-S
T ss_pred ccccCCCccCCEEEEccCCC---------CeEEEEECCCCCCCceeeeeechhhccc-------ccCCCcccceeECC-C
Confidence 34557 8899888766541 68999998765 5555552000000 0000011 457789 9
Q ss_pred CcEEEEec-C------CeEEEEecCCcccccceeeccC--C-eeEEEeCCCCCeEEEEeecCCCC---------------
Q 005315 321 DKYFAKLG-K------NMISVYETESFTLIDKKSLKVE--N-VMDFSWSPTDPIISLFVPELGGG--------------- 375 (702)
Q Consensus 321 g~~la~~~-d------~~i~v~d~~~~~~~~~~~~~~~--~-v~~~~~sp~~~~la~~~~~~~~~--------------- 375 (702)
| +++++. + +.|.++|..+++++........ . -.++.|+|+++.+++ ...
T Consensus 149 G-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvs-----S~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 149 A-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVS-----SEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp C-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEE-----CBCCCHHHHTTCCCTTTH
T ss_pred e-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEE-----ccCcCccccccccchhhh
Confidence 9 444443 4 7899999999988765432211 1 346889999998776 210
Q ss_pred --CCCcEEEEEecCCcceeeeeeecc--ccc--ceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCc-ceeEEE
Q 005315 376 --NQPARVSLVQIPSKEELRQKNLFS--VSD--CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI-PIEVLE 448 (702)
Q Consensus 376 --~~~~~i~~~~~~~~~~~~~~~~~~--~~~--~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~ 448 (702)
...-+|.+|+..+.+.+....+.. ... +.+.++|+|+++++...-.. +...+++.+|..+.... ....+.
T Consensus 223 ~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~---~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 223 KDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL---KDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp HHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET---TTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeec---cCCCceEEEEEecCCceeEEEEEe
Confidence 124578888888776655554421 112 23345999999888765000 00011233333332100 001111
Q ss_pred ecCC----------------CCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC---------
Q 005315 449 LDNK----------------NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--------- 503 (702)
Q Consensus 449 l~~h----------------~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--------- 503 (702)
+... ...+..+.+||||++|+++.... +.|.+|++.... +.+.+..+..+
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~--d~VavfdV~d~~---~~~lv~~I~tGG~~~~~~~~ 374 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI--GEVRQYDISNPF---KPVLTGKVKLGGIFHRADHP 374 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT--TEEEEEECSSTT---SCEEEEEEECBTTTTCBCCT
T ss_pred CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC--CEEEEEEecCCC---CcEEEEEEEeCCeecccccc
Confidence 1110 23467899999999999887744 389999985322 12344444322
Q ss_pred -------ceeEEEEccCCCEEEEEe
Q 005315 504 -------QANALFWSPSGRFIVLAG 521 (702)
Q Consensus 504 -------~v~~~~~spdg~~l~~~~ 521 (702)
.-..+.+||||++|+++.
T Consensus 375 ~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 375 AGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccCCCCCCEEEEcCCCCEEEEEc
Confidence 247799999999999987
No 356
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.04 E-value=3.5e-10 Score=103.31 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=69.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|+|+||| .++++++.++|+.+|+ ..+.++.|+.+|+++|||||+|.++++|.+|++.|||..++++ .+.|..
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~V~~ 170 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK-KLLVQR 170 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe-EEEEEe
Confidence 6899999999 9999999999999988 5899999988999999999999999999999999999999977 777764
No 357
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.04 E-value=8.2e-11 Score=103.53 Aligned_cols=77 Identities=22% Similarity=0.203 Sum_probs=64.3
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhccccc-cE--EeecC---CCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKED-GL--WMPVD---PETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 130 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~~-~~--~~~~d---~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~ 130 (702)
-++.|||+||| .+++++|..+|+.+|.. .+ .++.| ..+|+++|||||+|.+.++|..|+..|||..++++ .+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~-~l 122 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK-PM 122 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE-EC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc-EE
Confidence 46799999999 99999999999998873 22 12222 23799999999999999999999999999999877 78
Q ss_pred EEEec
Q 005315 131 AVNMF 135 (702)
Q Consensus 131 ~v~~~ 135 (702)
.|...
T Consensus 123 ~V~~a 127 (143)
T 3egn_A 123 VVQFA 127 (143)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 87753
No 358
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=3.3e-10 Score=92.11 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=60.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCC-eeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR-AHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~-~h~~~v~~ 134 (702)
.+.|||+||| .++++++.++|+.+++ ..+.|+.+ +|||||+|.+.++|+.|++.|||..+++ .+.+.|..
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 5799999999 9999999999999988 46777643 7999999999999999999999999983 33777764
No 359
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=4e-10 Score=90.15 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=60.7
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .++++++.++|+.+++ ..+.|+ +|||||+|.+.++|..|++.|||..++++ .++|...
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~a 77 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGV-NINVEAS 77 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSC-BCEEECS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCc-EEEEEEC
Confidence 5799999999 9999999999999988 467776 78999999999999999999999999877 7777653
No 360
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.03 E-value=3.1e-10 Score=90.30 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=59.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcc----c-------c-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccC
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVI----K-------E-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 125 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~----~-------~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 125 (702)
.+.|||+||| .++++++.++|+.+ + . .++.++.+ +|||||+|.++++|.+|+ .|||..++
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 6799999999 99999999999987 5 4 45666643 899999999999999999 99999999
Q ss_pred CeeEEEEEe
Q 005315 126 RAHIFAVNM 134 (702)
Q Consensus 126 ~~h~~~v~~ 134 (702)
++ .++|.+
T Consensus 79 g~-~l~V~r 86 (87)
T 2hzc_A 79 GQ-SLKIRR 86 (87)
T ss_dssp TE-ECEEEC
T ss_pred Ce-EEEEeC
Confidence 87 777764
No 361
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.03 E-value=7.5e-10 Score=100.44 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=69.8
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-.+.|+|+||| .++++++.++|+.+|. ..+.++.|+.+|+++|||||+|.+.++|..|+..|||..++++ .++|..
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v~~ 163 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR-PLRINW 163 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc-EEEEEe
Confidence 36789999999 9999999999999988 5899999988999999999999999999999999999999876 777764
No 362
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=3.8e-10 Score=92.18 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=63.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++|.++|+.+++ ..+.|+.+ +|||||+|.+.++|.+|++.|||..++++ .+.|....
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~a~ 87 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK-QLRVRFAC 87 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB-CCEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCc-eEEEEEcC
Confidence 5799999999 9999999999999988 57888754 79999999999999999999999999876 77776543
No 363
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.8e-10 Score=93.42 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=61.1
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
-++.|||+||| .+++++++.+|+.+|. .++.|+ +++|||||+|.+.++|..|+..|||..++++ .++|.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~V~ 96 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGR-NLRTG 96 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTE-ECCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCe-EEEEE
Confidence 46899999999 9999999999999988 477776 5689999999999999999999999999876 56554
No 364
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.02 E-value=8.4e-08 Score=96.46 Aligned_cols=232 Identities=8% Similarity=0.051 Sum_probs=135.0
Q ss_pred eEEEcCCCCcEEE-Eec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 313 VFRWGGGKDKYFA-KLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 313 ~~~~s~~dg~~la-~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
.+.|++ +++.|+ +.. ++.|..|+. ++.. .........+..++++|+|+++++ ......|..++.. .+
T Consensus 49 gp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~-------~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 49 GPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHC-------EHGRRAITRSDAD-GQ 117 (305)
T ss_dssp EEEEEG-GGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEE-------ETTTTEEEEECTT-SC
T ss_pred CCeEeC-CCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEE-------ECCCCEEEEECCC-CC
Confidence 579999 998444 444 889999987 3432 222234455889999999997765 3333467777754 22
Q ss_pred e--eeeeee--cccccceeEEccCCCEEEEEEcccccc------cccccccEEEEEEecCCcceeEEEecCCCCceeEEE
Q 005315 391 E--LRQKNL--FSVSDCKMYWQSSGDYLAVKVDRYTKT------KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 460 (702)
Q Consensus 391 ~--~~~~~~--~~~~~~~~~~s~~g~~l~~~~~~~~~~------~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 460 (702)
. +..... .......+.++++|+..++-..-++.. .......-.||.++........+. +......++
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl~ 194 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGLA 194 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEEE
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcceE
Confidence 1 111100 011223467899998766421101100 000011246777765332222222 234567899
Q ss_pred EeeCCcEEEEEEcCC---CCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCc
Q 005315 461 WEPKGHRFAVIHGDS---PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 537 (702)
Q Consensus 461 ~sp~g~~l~~~~~d~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~ 537 (702)
|+|+|+.|+++.... ....|.+|++.... ......+..........++++++|++. +++. + .|.+|+.+ +
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~---~-gv~~~~~~-g 267 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSG---T-GVCVFDSD-G 267 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-ECCS---S-EEEEECTT-S
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-EecC---C-cEEEECCC-C
Confidence 999999888876641 01279999986432 111112222223345679999999944 4443 4 49999985 4
Q ss_pred ceeeec-ccCceeeeEECCCCCEEEEEEe
Q 005315 538 ETMATA-EHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 538 ~~~~~~-~~~~i~~~~~spdg~~l~t~s~ 565 (702)
+.+... ....+++++|+|+++.|..++.
T Consensus 268 ~~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 268 QLLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp CEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred CEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 444432 2235889999999998888877
No 365
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.99 E-value=1.1e-09 Score=99.44 Aligned_cols=76 Identities=28% Similarity=0.263 Sum_probs=68.1
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe-eEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA-HIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~-h~~~v~ 133 (702)
-++.|+|+||| .++++++.++|+.+|. ..+.++.|+.+|+++|||||+|.+.++|..|++.|||..++++ ..++|.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 35789999999 9999999999999988 5889999988999999999999999999999999999999876 345554
No 366
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.99 E-value=5.1e-10 Score=93.97 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=56.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
.+.|||+||| .+++++|.++|..+++ ..+.|+.| |||||+|.+.++|++|++.|||..++++
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 5789999999 9999999999999988 57888776 9999999999999999999999999876
No 367
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.99 E-value=1e-09 Score=104.40 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=70.6
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.-.+.|||.||| .++++++.++|+.+++ ..+.++.|+.+|+++|||||+|.+.++|..|++.|||..++++ .+.|..
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ-YLRVGK 201 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSS-BCEEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCc-EEEEEE
Confidence 345799999999 9999999999999988 5899999988999999999999999999999999999999887 777764
No 368
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.98 E-value=3e-07 Score=93.34 Aligned_cols=226 Identities=12% Similarity=0.056 Sum_probs=131.1
Q ss_pred ceEEECCCCcEEEEEe-CCc-eEEeecCcCcceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005315 207 SFVQWSPLGTYLATVH-RQG-AAVWGGANTFNRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~-~~~-i~iw~~~~~~~~~~~~~~-~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~ 283 (702)
.+++|+|++..|+... ..+ |.+|+.. +.... .+.. ..+.+++|+|+|+++++. .+ .|.+||..
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~-~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~~-----------gl~~~d~~ 117 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLA-SGRKT-VHALPFMGSALAKISDSKQLIAS-DD-----------GLFLRDTA 117 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETT-TTEEE-EEECSSCEEEEEEEETTEEEEEE-TT-----------EEEEEETT
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECC-CCcEE-EEECCCcceEEEEeCCCeEEEEE-CC-----------CEEEEECC
Confidence 4688999865555444 334 8899988 44322 2333 359999999999988765 33 48999988
Q ss_pred CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C------CeEEEEecCCcccccceeeccCCeeEE
Q 005315 284 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K------NMISVYETESFTLIDKKSLKVENVMDF 356 (702)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d------~~i~v~d~~~~~~~~~~~~~~~~v~~~ 356 (702)
+++........... .......+.++| +|+++++.. . +.|..++ +++.. ...........+
T Consensus 118 ~g~~~~~~~~~~~~---------~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i 184 (326)
T 2ghs_A 118 TGVLTLHAELESDL---------PGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSI 184 (326)
T ss_dssp TCCEEEEECSSTTC---------TTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEE
T ss_pred CCcEEEEeeCCCCC---------CCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCe
Confidence 88754332211100 000012688999 999776543 2 3455555 34322 111223446789
Q ss_pred EeCCCCCeEEEEeecCCCCCCCcEEEEEecC--Cc-ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEE
Q 005315 357 SWSPTDPIISLFVPELGGGNQPARVSLVQIP--SK-EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 433 (702)
Q Consensus 357 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~--~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 433 (702)
+|+|+++.|++. ......|+.++.. +. . +.. . .
T Consensus 185 ~~s~dg~~lyv~------~~~~~~I~~~d~~~~~Gl~-~~~-----------------~--------------------~ 220 (326)
T 2ghs_A 185 CFSPDGTTGYFV------DTKVNRLMRVPLDARTGLP-TGK-----------------A--------------------E 220 (326)
T ss_dssp EECTTSCEEEEE------ETTTCEEEEEEBCTTTCCB-SSC-----------------C--------------------E
T ss_pred EEcCCCCEEEEE------ECCCCEEEEEEcccccCCc-ccC-----------------c--------------------e
Confidence 999999877652 1223466666643 11 1 000 0 0
Q ss_pred EEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEc-c
Q 005315 434 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS-P 512 (702)
Q Consensus 434 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-p 512 (702)
++ ..+......+..++++++|..+++....+ .|..|+. ++. ......++...+.+++|+ |
T Consensus 221 ~~-----------~~~~~~~~~p~gi~~d~~G~lwva~~~~~---~v~~~d~-~g~----~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 221 VF-----------IDSTGIKGGMDGSVCDAEGHIWNARWGEG---AVDRYDT-DGN----HIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EE-----------EECTTSSSEEEEEEECTTSCEEEEEETTT---EEEEECT-TCC----EEEEEECSCSBEEEEEEEST
T ss_pred EE-----------EECCCCCCCCCeeEECCCCCEEEEEeCCC---EEEEECC-CCC----EEEEEECCCCCcEEEEEecC
Confidence 00 00111133456788899998776665555 7888887 222 112223344468999998 9
Q ss_pred CCCEEEEEec
Q 005315 513 SGRFIVLAGL 522 (702)
Q Consensus 513 dg~~l~~~~~ 522 (702)
+++.|++++.
T Consensus 282 d~~~L~vt~~ 291 (326)
T 2ghs_A 282 DASRLLVTSA 291 (326)
T ss_dssp TSCEEEEEEB
T ss_pred CCCEEEEEec
Confidence 9888877654
No 369
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.98 E-value=9.5e-10 Score=101.55 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=66.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .++++.++.+|+.+|+ ..+.|+.|. +|+++|||||+|.+.++|..|+..++ ..++++ .+.|..-.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr-~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKET-DLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTE-ECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCE-EEEEEEhH
Confidence 5789999999 9999999999999998 589999997 69999999999999999999997765 478877 77777544
Q ss_pred C
Q 005315 137 D 137 (702)
Q Consensus 137 d 137 (702)
+
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 370
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.98 E-value=1e-09 Score=92.35 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=59.0
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeE-EEEEeCCHHHHHHHHHHhCCCccCC-eeEEEEE
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGY-CFIEYNTPQEAELAKEKTNGYKLDR-AHIFAVN 133 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~-~fv~~~~~~~a~~a~~~~~~~~~~~-~h~~~v~ 133 (702)
..|||+||| .++++.|.++|+.+|+ ..|.|+.+ ++|| |||+|.++++|..|++.|||..+.+ ..+++|.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 457899999 9999999999999998 47777753 3688 9999999999999999999999976 2366664
No 371
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.98 E-value=1e-09 Score=96.05 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=60.7
Q ss_pred cEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCC-eeEEEEEe
Q 005315 60 NIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR-AHIFAVNM 134 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~-~h~~~v~~ 134 (702)
..|||+||| .++++.|.++|+.+|+ ..|.|+. ++++|||||+|.+.++|..|++.|||..+.+ ...|+|..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~----k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT----KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE----SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe----CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 468999999 9999999999999998 4777753 3478999999999999999999999999964 23677764
No 372
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.98 E-value=7.1e-10 Score=98.39 Aligned_cols=71 Identities=23% Similarity=0.401 Sum_probs=64.0
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-.+.|||+||| .+++++|.++|+.+|+ ..+.|+.| ++|||||+|.+.++|..|+..|||..++++ .+.|..
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~ 144 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGC-RVRVEL 144 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSS-CCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCe-EEEEEE
Confidence 46899999999 9999999999999988 57888876 689999999999999999999999999876 777764
No 373
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.97 E-value=1.5e-09 Score=98.58 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=68.0
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCC-eeEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR-AHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~-~h~~~v~ 133 (702)
-++.|+|+||| .++++++.++|+.+|. ..+.++.|+.+|+++|||||+|.+.++|..|++.|||..+++ ...++|.
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 36799999999 9999999999999988 588899998899999999999999999999999999999975 2366654
No 374
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.97 E-value=1.7e-09 Score=87.65 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=60.7
Q ss_pred CCCcEEEECCCC--CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 57 GFGNIIVVDNLP--VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 57 ~~~~~~~v~~lp--~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.-++.|||+||| .++++++.++|+.+|+ ..+.|+ +|||||+|.+.++|..|++.|||..++++ .+.|.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~V~ 90 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGK-KLILE 90 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTE-ECEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCE-EEEEE
Confidence 357899999999 5999999999999988 466663 89999999999999999999999999877 77776
Q ss_pred e
Q 005315 134 M 134 (702)
Q Consensus 134 ~ 134 (702)
.
T Consensus 91 ~ 91 (97)
T 2xnq_A 91 V 91 (97)
T ss_dssp E
T ss_pred e
Confidence 4
No 375
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.7e-09 Score=88.31 Aligned_cols=68 Identities=25% Similarity=0.279 Sum_probs=59.1
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcc--cc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVI--KE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~--~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++|.++|+.+ +. ..+.+ .+|||||+|.+.++|..|+..|||..++++ .+.|..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~ 85 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--------IRDYAFVHFSNREDAVEAMKALNGKVLDGS-PIEVTL 85 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHSSEEETTE-EEEEEC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCc-EEEEEE
Confidence 5799999999 99999999999998 55 34443 378999999999999999999999999876 888775
Q ss_pred c
Q 005315 135 F 135 (702)
Q Consensus 135 ~ 135 (702)
.
T Consensus 86 a 86 (99)
T 2cpd_A 86 A 86 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 376
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=8.8e-10 Score=87.13 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=60.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHh-CCCccCCeeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT-NGYKLDRAHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~-~~~~~~~~h~~~v~ 133 (702)
.+.|||+||| .++++++.++|+.+|+ ..+.++. ++|||||+|.+.++|..|++.| ||..++++ .+.|.
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~-~l~v~ 82 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGR-RLNVK 82 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTE-ECCEE
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCC-EEEEE
Confidence 5799999999 9999999999999988 4777775 4799999999999999999999 99999876 66665
No 377
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.97 E-value=1.3e-09 Score=101.89 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=67.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .+++++|..+|+.+|+ ..+.|+.|+.+|+++|||||+|.++++|..|+.. ++..++++ .+.|...
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~-~l~v~~~ 89 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR-VVEPKRA 89 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE-ECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE-Eeeeecc
Confidence 6799999999 9999999999999998 5899999998999999999999999999999977 88888877 6766653
No 378
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.97 E-value=1e-08 Score=105.19 Aligned_cols=166 Identities=9% Similarity=0.044 Sum_probs=118.3
Q ss_pred ceeEEccCCCEEEEEEcccccccccccccEEEEEEecCC----------cceeEEEecCCCCceeEEEEeeCCcEEEEEE
Q 005315 403 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD----------IPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 472 (702)
Q Consensus 403 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 472 (702)
..+++++....+++++.++ +.+|++..-. .+.....+ .. |+.++| ++++|+++
T Consensus 41 nlLais~~~gll~a~~~~~----------l~v~~~~~l~~~~~~~~~~~~~~~~~~l---p~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGSK----------AVVGELQLLRDHITSDSTPLTFKWEKEI---PD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp BCEEEETTTTEEEEEETTE----------EEEEEHHHHHHHHHSSSCCCCCSEEEEC---TT-EEEEEE--ETTEEEEE-
T ss_pred cEEEEcCCCCEEEEeCCCE----------EEEEEhhHhhhhhccccccccceEEeeC---CC-eeEEEE--CCCEEEEE-
Confidence 3457889999988888764 3566654211 11122333 66 999999 99999998
Q ss_pred cCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeE
Q 005315 473 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVE 552 (702)
Q Consensus 473 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~ 552 (702)
.++ .|++||+.+... ......+ ...+.++.+.+.. +++++. ||.|.+||+.++.... ....|++++
T Consensus 104 ~~~---~l~v~dv~sl~~---~~~~~~~-~~~v~~i~~~~p~--~av~~~---dG~L~v~dl~~~~~~~--~~~~Vs~v~ 169 (388)
T 1xip_A 104 TRN---ALYSLDLEELSE---FRTVTSF-EKPVFQLKNVNNT--LVILNS---VNDLSALDLRTKSTKQ--LAQNVTSFD 169 (388)
T ss_dssp ESS---EEEEEESSSTTC---EEEEEEC-SSCEEEEEECSSE--EEEEET---TSEEEEEETTTCCEEE--EEESEEEEE
T ss_pred cCC---cEEEEEchhhhc---cCcccee-ecceeeEEecCCC--EEEEEC---CCCEEEEEccCCcccc--ccCCceEEE
Confidence 556 899999975432 2233333 3357777776543 777776 9999999999776654 346899999
Q ss_pred ECCCCCEEEEEEeecccccccEEEEEecccee---eee-----------ccccEeeEEEeeCCCCCCC
Q 005315 553 WDPTGRYVATAVTSVHEMENGFNIWSFNGKLL---YRT-----------LKDHFFQFLWRPRPPSFLT 606 (702)
Q Consensus 553 ~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l---~~~-----------~~~~i~~~~w~p~~~~l~s 606 (702)
|||+| ++.+.. ||.+++|+..+..+ ... +...+.++.|.+++.++++
T Consensus 170 WSpkG--~~vg~~-----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 170 VTNSQ--LAVLLK-----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ECSSE--EEEEET-----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCc--eEEEEc-----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999 677877 89999999987664 222 3467999999999887764
No 379
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=7.5e-10 Score=85.71 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=54.6
Q ss_pred cEEEECCCC-CCChhh----HHHhHhccc-c-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 005315 60 NIIVVDNLP-VVPKEK----FEKLEGVIK-E-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 132 (702)
Q Consensus 60 ~~~~v~~lp-~~~~~~----~~~l~~~~~-~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v 132 (702)
+.|||.||| .++++. |.+||+.+| + .+| +| |||||.|.+.++|.+|++.|||..+.++ .++|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr-~i~v 78 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN-RIIV 78 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS-CCEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc-eEEE
Confidence 459999999 999988 557888884 5 233 44 9999999999999999999999999988 7777
Q ss_pred Eecc
Q 005315 133 NMFD 136 (702)
Q Consensus 133 ~~~~ 136 (702)
....
T Consensus 79 ~~A~ 82 (96)
T 2diu_A 79 SFTP 82 (96)
T ss_dssp ESSC
T ss_pred EecC
Confidence 6433
No 380
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.96 E-value=9.7e-10 Score=104.56 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=66.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||+||| .+++++|..+|+.+|+ ..+.|+.|+.+|+++|||||+|.+.++|..|++.+||..+.++ .+.|..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~l~v~~ 104 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR-NIKVGR 104 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C-CCEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe-eEEEec
Confidence 6799999999 9999999999999988 5899999988999999999999999999999999999999877 677743
No 381
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=9.8e-10 Score=87.88 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=61.0
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++|..+|+.++. ..+.|+ +|||||+|.+.++|..|++.|||..++++ .+.|....
T Consensus 9 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a~ 79 (90)
T 2dnp_A 9 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGK-RINVELST 79 (90)
T ss_dssp SCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTE-ECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCc-EEEEEECC
Confidence 6789999999 9999999999999887 467776 44999999999999999999999999877 78877643
No 382
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.96 E-value=1.3e-09 Score=102.13 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=71.2
Q ss_pred CCCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 57 GFGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 57 ~~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.-.+.|||+||| .++++++.++|+.+|. ..+.++.|+.+|+++|||||+|.+.++|..|++.|||..++++ .+.|..
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK-KLLVQR 190 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE-EEEEEE
Confidence 346899999999 9999999999999988 5899999988999999999999999999999999999999877 777775
Q ss_pred c
Q 005315 135 F 135 (702)
Q Consensus 135 ~ 135 (702)
.
T Consensus 191 a 191 (198)
T 2yh0_A 191 A 191 (198)
T ss_dssp S
T ss_pred C
Confidence 3
No 383
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=7.1e-10 Score=89.35 Aligned_cols=69 Identities=28% Similarity=0.341 Sum_probs=59.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-c-cEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCC-CccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-D-GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG-YKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~-~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~-~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .+++++++++|+.+++ . .+.+ +++|||||+|.+.++|..|++.||| ..++++ .++|..
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~-~l~v~~ 79 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGK-IMEVDY 79 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTE-ECEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeECCE-EEEEEE
Confidence 5789999999 9999999999998887 3 3333 4689999999999999999999999 889876 788775
Q ss_pred c
Q 005315 135 F 135 (702)
Q Consensus 135 ~ 135 (702)
.
T Consensus 80 a 80 (93)
T 2cqh_A 80 S 80 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 384
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.95 E-value=1.6e-09 Score=86.11 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=56.2
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccC-CeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD-RAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~-~~h~~~v~~ 134 (702)
-.+.|||+||| .+++++|+++|+.+|+ .++.|+.| +||||||+|.++++|. .++|..+. +.+.+.|..
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEE
Confidence 36899999999 9999999999999998 58888874 8999999999999887 36777654 233677665
No 385
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.95 E-value=1.1e-09 Score=90.12 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=61.0
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++|.++|+.+++ ..+.++ +|||||+|.+.++|..|++.|||..++++ .+.|....
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a~ 81 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGE-NIEIVFAK 81 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTE-EEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCC-EEEEEEcC
Confidence 5789999999 9999999999999887 466665 56999999999999999999999999976 88887644
No 386
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.95 E-value=1.2e-09 Score=91.15 Aligned_cols=68 Identities=25% Similarity=0.384 Sum_probs=60.9
Q ss_pred CCcEEEECCCC-C-CChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-V-VPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~-~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.++.|||+||| . +++++|.++|+.+++ ..+.| ++|||||+|.+.++|..|++.|||..++++ .+.|..
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~V~~ 96 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQ-TLDINM 96 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTE-ECCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCe-EEEEEE
Confidence 36899999999 8 999999999999988 46666 689999999999999999999999999877 777765
No 387
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.95 E-value=8.5e-10 Score=100.19 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=68.0
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
.+.|||+||| .++++++.++|+.+|. ..+.++.|+.+|+++|||||+|.++++|..|++ +||..++++ .+.|..
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~-~i~V~~ 162 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR-KIEIKR 162 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS-CEEEEE
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe-EEEEee
Confidence 5689999999 9999999999999988 589999998899999999999999999999998 899999877 777765
No 388
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.95 E-value=1.7e-07 Score=98.16 Aligned_cols=232 Identities=10% Similarity=0.019 Sum_probs=137.0
Q ss_pred eEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcce
Q 005315 313 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 391 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 391 (702)
.++|++ +++++++.. ++.|++|+..++.+..... ...... ++|+|+++.|++ +..++...|+.++......
T Consensus 135 ~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~-~~~~~~-ia~~~~g~~l~~-----~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 135 GIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHP-GFKGGK-PAVTKDKQRVYS-----IGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp EEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEE-TCCBCB-CEECTTSSEEEE-----EBSSTTCEEEEEEGGGTTC
T ss_pred EEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeec-cCCCCc-eeEecCCCcEEE-----EecCCCceEEEEEcCCCce
Confidence 688999 999777766 7999999998765543221 122234 999999998776 3333333788888765433
Q ss_pred eeee-e--e-cccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE---ecCCCCce--eEEEEe
Q 005315 392 LRQK-N--L-FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---LDNKNDKI--IAFAWE 462 (702)
Q Consensus 392 ~~~~-~--~-~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~h~~~v--~~~~~s 462 (702)
.... . . .......++++|++..|++...++ .++.++........+. ..++.... ..++|+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~-----------~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNK-----------NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTC-----------EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCC-----------cEEEEECCCCCEEEEecccccCCCCCCccccEEEe
Confidence 2221 0 0 112334567899666666633222 3444443322222221 11222222 389999
Q ss_pred eCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcC--------------CCceeEEEEccCCCEEEEEe-ccCCC
Q 005315 463 PKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK--------------GKQANALFWSPSGRFIVLAG-LKGFN 526 (702)
Q Consensus 463 p~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~--------------~~~v~~~~~spdg~~l~~~~-~~~~d 526 (702)
|++..|+++.. .+ .|+.|+.... ...+.... -.....++++|+|+++++-. . +
T Consensus 276 p~~g~lyv~d~~~~---~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~---~ 344 (409)
T 3hrp_A 276 FVDSNFYMSDQNLS---SVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK---G 344 (409)
T ss_dssp TTTTEEEEEETTTT---EEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT---T
T ss_pred CCCCEEEEEeCCCC---EEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC---C
Confidence 96555555544 34 7888876421 11221111 12367899999999666554 4 7
Q ss_pred ceEEEEECCCcceeeecc----------------cCceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 527 GQLEFYNVDELETMATAE----------------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 527 g~v~i~d~~~~~~~~~~~----------------~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
+.|+.|++.++.+..... -.....++++++|..+++-.. .+.|+.+++
T Consensus 345 ~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~-----n~~Ir~i~~ 408 (409)
T 3hrp_A 345 YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW-----GKAIRKYAV 408 (409)
T ss_dssp CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST-----TCEEEEEEE
T ss_pred CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC-----CCeEEEEEe
Confidence 899999977666543211 134678999999766665555 677776654
No 389
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.94 E-value=1.8e-09 Score=102.24 Aligned_cols=75 Identities=25% Similarity=0.290 Sum_probs=67.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++|.++|+.+|. ..+.|+.|+ +.++|||||+|.+.++|.+|++.|||..++++ .+.|....
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~-~i~V~~a~ 179 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR-KVFVGRFK 179 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEECC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCE-EEEEEEcC
Confidence 4689999999 9999999999999988 588899985 66899999999999999999999999999987 88887654
No 390
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=9.5e-10 Score=89.24 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=63.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccE-EeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGL-WMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~-~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+||| .++++++.++|+.+|. ..+ .|+.|+.+|+ |||+|.+.++|..|++.|||..++++ .+.|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~-~l~V~~a 89 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENF-TLKVAYI 89 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSC-BCEEEEC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCc-EEEEEEc
Confidence 5789999999 9999999999999988 477 5888875544 99999999999999999999999877 7777754
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 90 ~ 90 (96)
T 2e44_A 90 P 90 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 391
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.94 E-value=2.3e-09 Score=89.98 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=58.2
Q ss_pred EEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeE-EEEEeCCHHHHHHHHHHhCCCccCCe-eEEEEEe
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGY-CFIEYNTPQEAELAKEKTNGYKLDRA-HIFAVNM 134 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~-~fv~~~~~~~a~~a~~~~~~~~~~~~-h~~~v~~ 134 (702)
.|||+||| .++++.|..+|+.+|+ ..+.|+. + .|| |||+|.+.++|..|++.|||..+++. ..++|..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 47899999 9999999999999998 4777753 2 286 99999999999999999999999863 4777763
No 392
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.94 E-value=2e-09 Score=98.57 Aligned_cols=75 Identities=11% Similarity=0.128 Sum_probs=66.6
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCC--eeEEEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR--AHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~--~h~~~v~ 133 (702)
-.+.|||+||| .++++++.++|+.+|. ..+.++.|+ +|+++|||||+|.+.++|..|++.|||..+.. ...+.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 46789999999 9999999999999988 588999997 79999999999999999999999999988764 2466665
No 393
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=4.2e-09 Score=84.56 Aligned_cols=69 Identities=10% Similarity=0.090 Sum_probs=61.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .+++++++++|+.++. ..+.|+ +|||||+|.+.++|..|++.|||..++++ .++|....
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~a~ 80 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGK-RMHVQLST 80 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTE-EEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCc-EEEEEEcc
Confidence 6899999999 9999999999999988 477776 34999999999999999999999999876 88887643
No 394
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.4e-09 Score=88.04 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=59.0
Q ss_pred CcEEEECCCC--CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP--VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp--~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||+||| .+++++|.++|+.+|. ..+.|+ +|||||+|.+.++|..|+..|||..+.++ .+.|..
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~V~~ 79 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGK-KLILEV 79 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTT-TBCEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCc-EEEEEE
Confidence 6799999999 6999999999999988 467774 79999999999999999999999999876 555544
No 395
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.7e-09 Score=97.98 Aligned_cols=73 Identities=22% Similarity=0.442 Sum_probs=65.8
Q ss_pred EEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 61 IIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 61 ~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.|||+||| .++++++.++|+.+|+ .++.++.|+ +|+++|||||+|.+.++|..|++.+||..+.++ .+.+...
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~i~v~~~ 76 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENN-IVKINWA 76 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEEC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCC-eeEEEEc
Confidence 69999999 9999999999999988 589999997 688999999999999999999999999999877 7777653
No 396
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.92 E-value=1.8e-09 Score=98.90 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=62.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCC--ceeeEEEEEeCCHHHHHHHHHHhCCCccC
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQ--KSLGYCFIEYNTPQEAELAKEKTNGYKLD 125 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~--~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 125 (702)
++.|||+||| .++++++.++|+.+|+ .++.|+.|+.+| +++|||||+|.++++|..|++.+||..+.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 5789999999 9999999999999988 589999998776 99999999999999999999999998774
No 397
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.5e-09 Score=87.64 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=59.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
.+.|||+||| .+++++|+.+|+.+++.. .++.|+.+|+ ||||+|.+.++|..|+. |||..++++ .+.|.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~-~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~-~l~V~ 77 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVA-SVVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGH-RLRVR 77 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEE-EEEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTE-ECCCB
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCE-EEEEE
Confidence 4689999999 999999999999988732 2377776776 99999999999999999 999999977 66665
No 398
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.91 E-value=4.6e-10 Score=91.88 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=58.4
Q ss_pred ECCCC-CCChhhHHHhH------------hcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 005315 64 VDNLP-VVPKEKFEKLE------------GVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 129 (702)
Q Consensus 64 v~~lp-~~~~~~~~~l~------------~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~ 129 (702)
++||| .++++++++.| +.+|+ .++.|+.|. +|+++|||||+|.++++|.+|++.|||..++++ .
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr-~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ-P 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE-E
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCE-E
Confidence 67888 88888887766 77787 589999987 689999999999999999999999999999988 6
Q ss_pred EEEE
Q 005315 130 FAVN 133 (702)
Q Consensus 130 ~~v~ 133 (702)
++|.
T Consensus 98 i~v~ 101 (104)
T 1jmt_A 98 IHAE 101 (104)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 6654
No 399
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.90 E-value=3e-09 Score=99.38 Aligned_cols=76 Identities=9% Similarity=0.085 Sum_probs=68.5
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
.+.|||+||| .++++++.++|+.+|. ..+.++.|+.+|+++|||||+|.+.++|..|+.. +|..++++ .+.|....
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~-~i~v~~a~ 181 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH-NCEVRKAL 181 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTE-ECEEEECC
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCE-EEEEEecC
Confidence 4789999999 9999999999999988 5889999988999999999999999999999987 79999877 77777543
No 400
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.89 E-value=5.9e-08 Score=99.40 Aligned_cols=261 Identities=9% Similarity=0.004 Sum_probs=150.1
Q ss_pred cccceEEECCCCcEEEEEeC--Cc-eEEeecCcCcceeeeec---------CCCeeEEEecCCCCEEEEEcC-----CCC
Q 005315 204 WTESFVQWSPLGTYLATVHR--QG-AAVWGGANTFNRLMRYA---------HPQVKLIDFSPGEKYLVTYSS-----HEP 266 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~--~~-i~iw~~~~~~~~~~~~~---------~~~v~~i~fSpdg~~l~t~s~-----d~~ 266 (702)
.....|+++|+|+.+++... ++ +.||.+. ++.. ..++ ...+..++|+|+|+.+++-.. .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~-- 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV-- 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC--
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC--
Confidence 45678999999999888642 23 4566654 3332 2221 234899999999986665433 3
Q ss_pred CCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEE-EE-e---cCCeEEEEecCCcc
Q 005315 267 SNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF-AK-L---GKNMISVYETESFT 341 (702)
Q Consensus 267 ~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~l-a~-~---~d~~i~v~d~~~~~ 341 (702)
..|.+||+.+++.++.+..+.... ..+.....+++++ ++.++ ++ . .++.|.+|++.+++
T Consensus 93 --------~~i~~~d~~tg~~~~~~~~~~~~~-------~~~~~~~~v~vd~-~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 93 --------PKLVAWDTLNNQLSRVIYLPPPIT-------LSNSFVNDLAVDL-IHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp --------CEEEEEETTTTEEEEEEECCTTTS-------CTTCCCCEEEEET-TTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred --------CeEEEEECCCCeEEEEEECChhhc-------ccccccceEEEec-CCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 579999999999877775432111 0000012678887 65443 33 2 46789999998776
Q ss_pred cccceeeccCC-eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcc
Q 005315 342 LIDKKSLKVEN-VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 342 ~~~~~~~~~~~-v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 420 (702)
.......+... .....++++|..+.+ ...++....| ......++|+|+|+.|++....
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~g~~~~~----------------~~~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQI-----GQPDGTVIRP----------------HLGVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBE-----ECTTSCEECC----------------CCCEEEEEECTTSCEEEEEESS
T ss_pred EEEEecCCCcccccccceeECCEEEEe-----ccCCCceece----------------ecccceeEeccCCCEEEEEeCC
Confidence 43322111010 001334445554443 1222222111 0112346899999998887665
Q ss_pred cccccccccccEEEEEEecC---Ccc------eeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCc
Q 005315 421 YTKTKKSTYTGFELFRIKER---DIP------IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA 491 (702)
Q Consensus 421 ~~~~~~~~~~~~~l~~l~~~---~~~------~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~ 491 (702)
.. .+|.+... ... ...+...++.+....++++++|..+++....+ .|.+|+..++.
T Consensus 216 ~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~---~V~~~d~~~G~-- 280 (343)
T 2qe8_A 216 ST----------SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHS---AIGVITSADRA-- 280 (343)
T ss_dssp CS----------EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGT---EEEEEETTTTE--
T ss_pred CC----------eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCC---eEEEEECCCCC--
Confidence 43 56666521 000 00011112234566799999998777776666 89999973332
Q ss_pred CceEEEEEcC-CCceeEEEEccCCCEEEEEec
Q 005315 492 GRVSKLTTLK-GKQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 492 ~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~ 522 (702)
...+.... ......++|+|+|+++++.+.
T Consensus 281 --~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 281 --YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp --EEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred --EEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 22333322 235789999999987777654
No 401
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.89 E-value=1.7e-09 Score=98.14 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=60.3
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
++.|||+||| .++++++.++|+.+|+ .++.|+.|+.+|+++|||||+|.++++|..|+.. +..++++
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~ 71 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGK 71 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCe
Confidence 5789999999 9999999999999988 5899999988999999999999999999999985 4455554
No 402
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.89 E-value=5.4e-07 Score=92.20 Aligned_cols=276 Identities=8% Similarity=0.043 Sum_probs=152.9
Q ss_pred cceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceE
Q 005315 235 FNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 314 (702)
Q Consensus 235 ~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 314 (702)
.+.+..+. ..+..++++|+|+.+++..... .+.++||.+.+|+ +..+....... ...... -..+
T Consensus 9 ~~~v~~~~-~~p~~va~~~~g~~~v~~~~~~--------~~~~~l~~~~~g~-~~~~p~~~~~~----~~~~~~--p~gv 72 (343)
T 2qe8_A 9 LEVVAELS-LAPGNITLTPDGRLFLSLHQFY--------QPEMQVAELTQDG-LIPFPPQSGNA----IITFDT--VLGI 72 (343)
T ss_dssp CEEEEEES-SCEEEEEECTTSCEEEEECGGG--------CCSCSEEEEETTE-EEESCCCCSSC----CCCCSC--EEEE
T ss_pred eEEEEEcC-CCcceEEECCCCCEEEEeCCCC--------CCceEEEEECCCC-eecCCCcccCc----ccceeE--eeEE
Confidence 44555555 5689999999999988864320 0214566655554 34443211000 000011 1167
Q ss_pred EEcCCCCcEEEEec------CCeEEEEecCCcccccceeec------cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEE
Q 005315 315 RWGGGKDKYFAKLG------KNMISVYETESFTLIDKKSLK------VENVMDFSWSPTDPIISLFVPELGGGNQPARVS 382 (702)
Q Consensus 315 ~~s~~dg~~la~~~------d~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 382 (702)
++++ +++++++-. ++.|.+||+.+++++....+. ...+.+++++|++..+.+. . .+......|.
T Consensus 73 ~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt-d--~~~~~~~~i~ 148 (343)
T 2qe8_A 73 KSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS-D--PAPDDKAALI 148 (343)
T ss_dssp EECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE-E--CCSGGGCEEE
T ss_pred EEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE-c--CccCCCCeEE
Confidence 8999 988666543 378999999988765443322 1236889999875544331 0 0111456788
Q ss_pred EEecCCcceeeeeeec-ccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEE
Q 005315 383 LVQIPSKEELRQKNLF-SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 461 (702)
Q Consensus 383 ~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 461 (702)
+++..+.+..+....+ ........+.++|..+.+...++. +. .+ ...+..++|
T Consensus 149 v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~---------~~--------------~~---~~~~~gia~ 202 (343)
T 2qe8_A 149 RVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGT---------VI--------------RP---HLGVNGIVL 202 (343)
T ss_dssp EEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSC---------EE--------------CC---CCCEEEEEE
T ss_pred EEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCc---------ee--------------ce---ecccceeEe
Confidence 8887665543322110 000000122334443333222211 00 01 234678999
Q ss_pred eeCCcEEEEEEcCCCCCeEEEEEeeccc---Cc-------CceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEE
Q 005315 462 EPKGHRFAVIHGDSPRPDISFYSMRTAQ---HA-------GRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEF 531 (702)
Q Consensus 462 sp~g~~l~~~~~d~~~~~v~i~d~~~~~---~~-------~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i 531 (702)
+|+|+.|+++...+. ++|.+.... .. ..+..... ......++++++|+++++... ++.|.+
T Consensus 203 s~dg~~ly~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~g~--~g~pdgia~d~~G~l~va~~~---~~~V~~ 273 (343)
T 2qe8_A 203 DAENEWLYLSPMHST----SMYRIKSADLSNLQLTDAELGSKIERYSE--KPICDGISIDKDHNIYVGDLA---HSAIGV 273 (343)
T ss_dssp CTTSCEEEEEESSCS----EEEEEEHHHHTCTTCCHHHHHTTCEEEEE--CCSCSCEEECTTCCEEEEEGG---GTEEEE
T ss_pred ccCCCEEEEEeCCCC----eEEEEEHHHhcCCCCChhhhhcceEeccc--CCCCceEEECCCCCEEEEccC---CCeEEE
Confidence 999999988877652 445543210 00 00111111 124567999999988887766 789999
Q ss_pred EECCCcceee--ecc-cCceeeeEECCCCCEEEEEEe
Q 005315 532 YNVDELETMA--TAE-HFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 532 ~d~~~~~~~~--~~~-~~~i~~~~~spdg~~l~t~s~ 565 (702)
||..+++... ... ....++++++++|+.+++.+.
T Consensus 274 ~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 274 ITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp EETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred EECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 9994454322 222 345789999999987777665
No 403
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.88 E-value=2.8e-09 Score=87.30 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=63.7
Q ss_pred CcEEEECCC--C-CCCh--------hhHHHhHhcccc-ccEEeecCCCC--CceeeEEEEEeCCHHHHHHHHHHhCCCcc
Q 005315 59 GNIIVVDNL--P-VVPK--------EKFEKLEGVIKE-DGLWMPVDPET--QKSLGYCFIEYNTPQEAELAKEKTNGYKL 124 (702)
Q Consensus 59 ~~~~~v~~l--p-~~~~--------~~~~~l~~~~~~-~~~~~~~d~~~--~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 124 (702)
+.+|++.|+ | .+.+ ++++++|+.+|+ .++.||.|+.+ ++++|||||+|.++++|.+|++.|||..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 568888998 4 3332 578888888888 58999999755 36899999999999999999999999999
Q ss_pred CCeeEEEEEecc
Q 005315 125 DRAHIFAVNMFD 136 (702)
Q Consensus 125 ~~~h~~~v~~~~ 136 (702)
+++ .+.|.-++
T Consensus 85 ~GR-~i~v~~~~ 95 (105)
T 3v4m_A 85 ANR-VVVTKYCD 95 (105)
T ss_dssp TTE-ECEEEEEC
T ss_pred CCC-EEEEEEeC
Confidence 988 77776543
No 404
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.88 E-value=2.4e-07 Score=98.57 Aligned_cols=268 Identities=11% Similarity=0.018 Sum_probs=164.2
Q ss_pred CCCcEEEEEeCCc--eEEeecCcCcceee--eecC-CCeeEEEe-c-CCCCEEEEEcCCCCCCC--------cCCCccEE
Q 005315 213 PLGTYLATVHRQG--AAVWGGANTFNRLM--RYAH-PQVKLIDF-S-PGEKYLVTYSSHEPSNP--------RDANRVVI 277 (702)
Q Consensus 213 pdg~~lat~~~~~--i~iw~~~~~~~~~~--~~~~-~~v~~i~f-S-pdg~~l~t~s~d~~~~~--------~~~~~~~i 277 (702)
+||++|.....++ |.+.|+. +++... .++. .+...+++ + |+++|++.++......+ .+...+.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCD-VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETT-TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECC-CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 3899999888766 8899999 888666 4443 45889998 5 99999988864322111 12334789
Q ss_pred EEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--C--------------CeEEEEecCCcc
Q 005315 278 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--K--------------NMISVYETESFT 341 (702)
Q Consensus 278 ~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d--------------~~i~v~d~~~~~ 341 (702)
.+.|..+++.+.++......- .+..+| +|+++++.+ . ..|.+.+.+...
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd--------------~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLD--------------NCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCC--------------CEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred EEEECCCCeEEEEEEeCCCcc--------------ceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 999999998888876433332 578999 999988777 2 225555543221
Q ss_pred cccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC--cce-eeeeeecccccceeEEccCCCEEEEEE
Q 005315 342 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS--KEE-LRQKNLFSVSDCKMYWQSSGDYLAVKV 418 (702)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~~g~~l~~~~ 418 (702)
.+.++|+.... + .|.+++..+ .+. +..... ......+.++|||+++++..
T Consensus 243 ---------------~~v~~Gk~~~i-------~----~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~ 295 (595)
T 1fwx_A 243 ---------------KAIAAGDYQEL-------N----GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAG 295 (595)
T ss_dssp ---------------HHHHHTCSEEE-------T----TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEEC
T ss_pred ---------------EeccCCCeeEE-------C----cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeC
Confidence 12233444332 1 155666655 223 222222 23444567899999998876
Q ss_pred cccccccccccccEEEEEEecCC-----------cceeEEEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEee
Q 005315 419 DRYTKTKKSTYTGFELFRIKERD-----------IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMR 486 (702)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~l~~~~-----------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~ 486 (702)
.... .+.++++.... .....+.+ ......++|+|+| ++++... ++ +|..|++.
T Consensus 296 ~~s~--------~VsVid~~~~~~~~~~~l~~~~~v~~~v~v---G~gP~h~aF~~dG-~aY~t~~lds---qV~kwdi~ 360 (595)
T 1fwx_A 296 KLSP--------TVTVLDVTRFDAVFYENADPRSAVVAEPEL---GLGPLHTAFDGRG-NAYTSLFLDS---QVVKWNIE 360 (595)
T ss_dssp TTSS--------BEEEEEGGGHHHHHHSCCCGGGGEEECCBC---CSCEEEEEECTTS-EEEEEETTTT---EEEEEEHH
T ss_pred CCCC--------eEEEEECcccccccccccCcccceEEEcCC---CCCcceEEECCCC-eEEEEEecCC---cEEEEEhh
Confidence 5432 25666665321 11112223 5678889999999 5555544 55 89999997
Q ss_pred ccc----CcCceEEEEEcCCC-cee------EEEEccCCCEEEEEeccCCCce----------EEEEECCCcc
Q 005315 487 TAQ----HAGRVSKLTTLKGK-QAN------ALFWSPSGRFIVLAGLKGFNGQ----------LEFYNVDELE 538 (702)
Q Consensus 487 ~~~----~~~~~~~~~~~~~~-~v~------~~~~spdg~~l~~~~~~~~dg~----------v~i~d~~~~~ 538 (702)
+.. +......+.++.-+ +.. .+..+|||++|+++.....|.- -.++|+.+++
T Consensus 361 ~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 361 DAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp HHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred HhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 621 11112355555543 222 2345899999999886542332 2889997544
No 405
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=6.8e-09 Score=84.22 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=61.0
Q ss_pred CcEEEECCCCCCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLPVVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
.+.|||+|| .+++++|+++|+.+++ ..+.|+ +++|||||+|.+.++|..|+..|||..++++ .+.|...
T Consensus 15 ~~~l~V~n~-~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~-~l~v~~a 84 (97)
T 1x5p_A 15 GNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV-QLKVNIA 84 (97)
T ss_dssp CSEEEEECS-SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTE-EEEEECC
T ss_pred CCEEEEcCC-CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCe-EEEEEEC
Confidence 679999997 8999999999999988 466663 6789999999999999999999999999876 8888753
No 406
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.85 E-value=3.5e-09 Score=98.91 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=63.6
Q ss_pred CcEEEECCCC--CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP--VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp--~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
+++|||+||| .+++++|..||+.+|+ .++.|+.| .+|||||+|.++++|..|++.|||..+.++ .+.|..-
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~-~l~v~~s 77 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQ-KMNVCVS 77 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEEC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCc-eEEEEEc
Confidence 5799999999 6999999999999998 57888765 379999999999999999999999999987 7888753
No 407
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.84 E-value=5.7e-07 Score=91.27 Aligned_cols=221 Identities=9% Similarity=-0.067 Sum_probs=128.8
Q ss_pred cCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCceEEeecCcCccee--eeec--
Q 005315 167 TDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRL--MRYA-- 242 (702)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~--~~~~-- 242 (702)
.++++...+++....+.+..|+.. .++ ...+. ....+.+++|+|+|+++++. .+++.+|+.. ++... ....
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~-~~~-~~~~~-~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~-~g~~~~~~~~~~~ 130 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLA-SGR-KTVHA-LPFMGSALAKISDSKQLIAS-DDGLFLRDTA-TGVLTLHAELESD 130 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETT-TTE-EEEEE-CSSCEEEEEEEETTEEEEEE-TTEEEEEETT-TCCEEEEECSSTT
T ss_pred EeCCCCEEEEEECCCCEEEEEECC-CCc-EEEEE-CCCcceEEEEeCCCeEEEEE-CCCEEEEECC-CCcEEEEeeCCCC
Confidence 345555566665555566677652 222 22222 23468899999999987765 6679999987 44432 2211
Q ss_pred C--CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCC
Q 005315 243 H--PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 320 (702)
Q Consensus 243 ~--~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~d 320 (702)
. ..+.++.++|+|+++++...... ....+.|..++ +++............ .++|+| |
T Consensus 131 ~~~~~~~~i~~d~~G~l~v~~~~~~~----~~~~~~l~~~~--~g~~~~~~~~~~~~~--------------~i~~s~-d 189 (326)
T 2ghs_A 131 LPGNRSNDGRMHPSGALWIGTMGRKA----ETGAGSIYHVA--KGKVTKLFADISIPN--------------SICFSP-D 189 (326)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTC----CTTCEEEEEEE--TTEEEEEEEEESSEE--------------EEEECT-T
T ss_pred CCCCCCCCEEECCCCCEEEEeCCCcC----CCCceEEEEEe--CCcEEEeeCCCcccC--------------CeEEcC-C
Confidence 1 13889999999997765542100 11124566666 555433221111111 679999 9
Q ss_pred CcEEEEec--CCeEEEEecC--Cc-ccccceee-----ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc
Q 005315 321 DKYFAKLG--KNMISVYETE--SF-TLIDKKSL-----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 390 (702)
Q Consensus 321 g~~la~~~--d~~i~v~d~~--~~-~~~~~~~~-----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 390 (702)
+++++.+. ++.|.+|++. ++ .+...... .......+++.++|.+.+. ..+...|..|+. ..+
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva-------~~~~~~v~~~d~-~g~ 261 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA-------RWGEGAVDRYDT-DGN 261 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE-------EETTTEEEEECT-TCC
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE-------EeCCCEEEEECC-CCC
Confidence 98765554 7899999986 55 33221111 1123678899999986654 112236777776 444
Q ss_pred eeeeeeecccccceeEEc-cCCCEEEEEEccc
Q 005315 391 ELRQKNLFSVSDCKMYWQ-SSGDYLAVKVDRY 421 (702)
Q Consensus 391 ~~~~~~~~~~~~~~~~~s-~~g~~l~~~~~~~ 421 (702)
.+............++|+ ++++.|++.+...
T Consensus 262 ~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 262 HIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 444443333344567787 8888887766543
No 408
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.83 E-value=5.3e-09 Score=95.67 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=64.3
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhccccccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-.+.|||+||| .++++++.++|+.+++ |.++ ..+|+++|||||+|.+.++|..|++.|||..++++ .+.|..
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~--v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v~~ 170 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALE--IRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR-SVSLYY 170 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSE--EEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTE-EEEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCe--EEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCe-EEEEEe
Confidence 36799999999 9999999999999887 5555 45899999999999999999999999999999987 777764
No 409
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.83 E-value=6.2e-09 Score=87.94 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=61.6
Q ss_pred CCcEEEECCCCCCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLPVVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-++.|||+|+ .+++++|+++|+.+|+ ..+.|+ +++|||||+|.+.++|..|+..|||..++++ .+.|...
T Consensus 38 ~~~~lfVgnl-~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~-~l~V~~a 108 (121)
T 2bz2_A 38 KGNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV-QLKVNIA 108 (121)
T ss_dssp CCCEEEEECS-SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSC-BCEEEEC
T ss_pred CCCEEEEcCC-CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCe-EEEEEEe
Confidence 3689999996 6999999999999988 477775 6789999999999999999999999999876 7777653
No 410
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.82 E-value=7e-09 Score=86.56 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=64.7
Q ss_pred CCcEEEECCCCC---CC---hhhHHHhHhcccc-ccEEeecCCC----CCceeeEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005315 58 FGNIIVVDNLPV---VP---KEKFEKLEGVIKE-DGLWMPVDPE----TQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 126 (702)
Q Consensus 58 ~~~~~~v~~lp~---~~---~~~~~~l~~~~~~-~~~~~~~d~~----~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 126 (702)
.+.+|++.|+-. +. +++++..|+.+|+ .++.||.|+. +++++||+||+|.++++|.+|++.|||..|++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 478999999852 22 4677788888888 5889998864 46889999999999999999999999999998
Q ss_pred eeEEEEEecc
Q 005315 127 AHIFAVNMFD 136 (702)
Q Consensus 127 ~h~~~v~~~~ 136 (702)
+ .+.|..+.
T Consensus 99 R-~i~v~~~~ 107 (118)
T 3ue2_A 99 R-KVVAEVYD 107 (118)
T ss_dssp E-ECEEEEEC
T ss_pred c-EEEEEEcC
Confidence 8 78877654
No 411
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.81 E-value=6.2e-07 Score=86.49 Aligned_cols=210 Identities=11% Similarity=0.087 Sum_probs=128.7
Q ss_pred CcceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcc
Q 005315 234 TFNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVS 310 (702)
Q Consensus 234 ~~~~~~~~~~~~---v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (702)
+.+.+.+++|+. ...+.|+|++...++.+.. ..+.|.++|+.+|+.++.+.......
T Consensus 8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~--------~~s~v~~iD~~tg~v~~~i~l~~~~f------------ 67 (266)
T 2iwa_A 8 IVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLY--------GRSSVRQVALQTGKVENIHKMDDSYF------------ 67 (266)
T ss_dssp EEEEEEEEECCTTCCEEEEEECSTTEEEEEECST--------TTCEEEEEETTTCCEEEEEECCTTCC------------
T ss_pred CceEEEEEECCCCCCcccEEEeCCCeEEEECCCC--------CCCEEEEEECCCCCEEEEEecCCCcc------------
Confidence 345667777764 5799999997555544431 11689999999999999876543322
Q ss_pred cceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC
Q 005315 311 WPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 388 (702)
Q Consensus 311 w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 388 (702)
...+.. +++.|..+. ++.+.++|..+++.+...... .+ ....++++|+.+.+ .++...|+.++..+
T Consensus 68 --geGi~~-~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~-~g~glt~Dg~~l~v-------s~gs~~l~viD~~t 135 (266)
T 2iwa_A 68 --GEGLTL-LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK-DGWGLATDGKILYG-------SDGTSILYEIDPHT 135 (266)
T ss_dssp --EEEEEE-ETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS-SCCEEEECSSSEEE-------ECSSSEEEEECTTT
T ss_pred --eEEEEE-eCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC-CeEEEEECCCEEEE-------ECCCCeEEEEECCC
Confidence 122333 444444444 999999999998887654333 12 23446678877776 23566788887766
Q ss_pred cceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEE
Q 005315 389 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF 468 (702)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l 468 (702)
.+.+....... .+.+ -..++.+.|. +|. +
T Consensus 136 ~~v~~~I~Vg~----------------------------------------~~~p---------~~~~nele~~-dg~-l 164 (266)
T 2iwa_A 136 FKLIKKHNVKY----------------------------------------NGHR---------VIRLNELEYI-NGE-V 164 (266)
T ss_dssp CCEEEEEECEE----------------------------------------TTEE---------CCCEEEEEEE-TTE-E
T ss_pred CcEEEEEEECC----------------------------------------CCcc---------cccceeEEEE-CCE-E
Confidence 55433222100 0000 1234556666 664 4
Q ss_pred EEEEc-CCCCCeEEEEEeecccCcCceEEEEEcCC---------------CceeEEEEccCCCEEEEEeccCCCceEEEE
Q 005315 469 AVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKG---------------KQANALFWSPSGRFIVLAGLKGFNGQLEFY 532 (702)
Q Consensus 469 ~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~---------------~~v~~~~~spdg~~l~~~~~~~~dg~v~i~ 532 (702)
.+... .+ .|.+.|+.++. .+..+.- ...+.++|+|+++.+++++.. .+.|...
T Consensus 165 yvn~~~~~---~V~vID~~tg~------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~--~~~v~~i 233 (266)
T 2iwa_A 165 WANIWQTD---CIARISAKDGT------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL--WPKLFEI 233 (266)
T ss_dssp EEEETTSS---EEEEEETTTCC------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT--CSEEEEE
T ss_pred EEecCCCC---eEEEEECCCCc------EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC--CCeEEEE
Confidence 44443 34 88888887655 3333321 134899999999888777642 6788888
Q ss_pred ECCCc
Q 005315 533 NVDEL 537 (702)
Q Consensus 533 d~~~~ 537 (702)
++...
T Consensus 234 ~l~~~ 238 (266)
T 2iwa_A 234 KLHLV 238 (266)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 87643
No 412
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.77 E-value=1.6e-08 Score=100.60 Aligned_cols=76 Identities=26% Similarity=0.377 Sum_probs=69.7
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
++.|||+||| .++++++..+|+.+|. ..+.++.|+.+|+++|||||+|.+.++|..|+..+||..++++ .+.|...
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~i~v~~a 172 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR-TLYVHWT 172 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEEC
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc-EEEEEEC
Confidence 5789999999 9999999999999988 5788999988999999999999999999999999999999877 7777653
No 413
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.77 E-value=1.5e-08 Score=100.72 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=69.5
Q ss_pred CCcEEEECCCC-CC-ChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VV-PKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~-~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-.+.|||.||| .+ +++++..+|+.+|. ..+.++.|+ +|+++|||||+|.++++|..|+..|||..++++ .+.|..
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~ 260 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGS-HLRVSF 260 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe-EEEEEE
Confidence 46899999999 75 99999999999998 589999997 899999999999999999999999999999877 787775
Q ss_pred cc
Q 005315 135 FD 136 (702)
Q Consensus 135 ~~ 136 (702)
..
T Consensus 261 a~ 262 (284)
T 3smz_A 261 CA 262 (284)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 414
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=2.7e-08 Score=82.96 Aligned_cols=79 Identities=13% Similarity=0.259 Sum_probs=64.7
Q ss_pred CCcEEEECCCCCCC------------hhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCcc
Q 005315 58 FGNIIVVDNLPVVP------------KEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 124 (702)
Q Consensus 58 ~~~~~~v~~lp~~~------------~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 124 (702)
-+++|+|.||.... +++++++|+.+|+ ..+.| .|+ .++|||||+|.+.++|..|++.|||..+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 47899999996333 4789999999988 47766 454 4899999999999999999999999999
Q ss_pred CCeeEEEEEeccCcccc
Q 005315 125 DRAHIFAVNMFDDFDKF 141 (702)
Q Consensus 125 ~~~h~~~v~~~~d~~~~ 141 (702)
+++ .+.|.......++
T Consensus 90 ~gr-~l~v~~a~~~~~~ 105 (112)
T 2dit_A 90 GGR-QITAQAWDGTTDY 105 (112)
T ss_dssp TTE-ECEEEECCSCCCS
T ss_pred CCc-EEEEEEeCCCCCc
Confidence 977 8888876654444
No 415
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.75 E-value=3.9e-09 Score=96.59 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=64.6
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-++.|||+||| .++++++.++|..++. .+ .++.|..+|+++|||||+|.++++|..|+ .|||..+.++ .+.|...
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~-~l~v~~~ 88 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGN-EIKLEKP 88 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTE-EEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCe-EEEEecC
Confidence 36899999999 9999999999998776 23 44556568999999999999999999999 5999999977 7887654
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 89 ~ 89 (175)
T 1fje_B 89 K 89 (175)
T ss_dssp C
T ss_pred C
Confidence 3
No 416
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.74 E-value=9.6e-09 Score=95.95 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=59.8
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc---ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE---DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~---~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
+++|||.||| .+++++|++||+.+|. ..+.++.|. +..+|||||+|.+.++|..|+..|||+.+++.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 5689999999 9999999999998887 367777774 66779999999999999999999999998765
No 417
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.73 E-value=1.1e-06 Score=98.30 Aligned_cols=73 Identities=11% Similarity=0.091 Sum_probs=51.1
Q ss_pred ceEEEEECCCcceeeeccc-CceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeeeccc---cEeeEEEeeCC
Q 005315 527 GQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD---HFFQFLWRPRP 601 (702)
Q Consensus 527 g~v~i~d~~~~~~~~~~~~-~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~~~~---~i~~~~w~p~~ 601 (702)
|.|..||+.+++.+-+... ..+....++.+|..+++++. |+.+++||.. |+.+...... .-.-+.|.++|
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~-----dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G 531 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA-----DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG 531 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-----TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC-----CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCC
Confidence 7899999999988766433 44556677788888888877 8999999976 7776655321 12234555666
Q ss_pred CCC
Q 005315 602 PSF 604 (702)
Q Consensus 602 ~~l 604 (702)
+.+
T Consensus 532 ~~~ 534 (677)
T 1kb0_A 532 RQY 534 (677)
T ss_dssp EEE
T ss_pred EEE
Confidence 533
No 418
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.73 E-value=2.7e-08 Score=98.80 Aligned_cols=74 Identities=14% Similarity=0.213 Sum_probs=64.8
Q ss_pred CCcEEEECCCC-CCChhhHH----HhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFE----KLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 131 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~----~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~ 131 (702)
-++.|||+||| .+++++|+ .+|+.+|+ ..+.++. +|+++|||||+|.+.++|..|++.|||..+.++ .+.
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~ 83 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK-PMR 83 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc-EEE
Confidence 37899999999 99999977 78888887 4677764 789999999999999999999999999999886 777
Q ss_pred EEec
Q 005315 132 VNMF 135 (702)
Q Consensus 132 v~~~ 135 (702)
|...
T Consensus 84 v~~a 87 (282)
T 3pgw_A 84 IQYA 87 (282)
T ss_pred EEEe
Confidence 7654
No 419
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.72 E-value=1.9e-08 Score=98.40 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=66.7
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCC---eeEEEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR---AHIFAVN 133 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~---~h~~~v~ 133 (702)
++.|||+||| .++++++..+|+.+|. ..+.++.|+ +|+++|||||+|.+.++|..|+..||+..+.. .+++.|.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 5789999999 9999999999999988 588999995 99999999999999999999999996544431 3377776
Q ss_pred eccCc
Q 005315 134 MFDDF 138 (702)
Q Consensus 134 ~~~d~ 138 (702)
.....
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 65543
No 420
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=5.9e-09 Score=82.86 Aligned_cols=66 Identities=11% Similarity=0.189 Sum_probs=53.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCcc--CCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL--DRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~--~~~h~~~v~~ 134 (702)
++.|||+||| .+++++|+++|+.+++ ..+.|+.+ ++|||||+|.+.++|++ +++..+ .+ ..+.|..
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g-~~l~v~~ 74 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKG-ISVHISN 74 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETT-EEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCC-EEEEEEe
Confidence 6899999999 9999999999999988 57888764 89999999999999874 566544 33 3666654
No 421
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.69 E-value=1.9e-08 Score=100.41 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=67.2
Q ss_pred CCcEEEECCCC-C-CChhhHHHhHhcccc-ccEEeecCCC-CCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 005315 58 FGNIIVVDNLP-V-VPKEKFEKLEGVIKE-DGLWMPVDPE-TQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 133 (702)
Q Consensus 58 ~~~~~~v~~lp-~-~~~~~~~~l~~~~~~-~~~~~~~d~~-~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~ 133 (702)
-.+.|||.||| . ++++++.++|+.+|. ..+.++.|.. ||+++|||||+|.+.++|..|+ .|||..++++ .+.|.
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~-~i~V~ 286 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNR-EISVS 286 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTE-EEEEE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCc-EEEEE
Confidence 46899999999 8 999999999999988 5899999975 5999999999999999999999 9999999876 78776
Q ss_pred ec
Q 005315 134 MF 135 (702)
Q Consensus 134 ~~ 135 (702)
..
T Consensus 287 ~a 288 (292)
T 2ghp_A 287 LA 288 (292)
T ss_dssp EC
T ss_pred Ee
Confidence 53
No 422
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.69 E-value=2.4e-08 Score=99.37 Aligned_cols=68 Identities=28% Similarity=0.280 Sum_probs=57.3
Q ss_pred ccccCCCCcEEEECC--CC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccC
Q 005315 52 QEVESGFGNIIVVDN--LP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 125 (702)
Q Consensus 52 ~~~~~~~~~~~~v~~--lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 125 (702)
+.....-+++|||+| |+ .+++++|+++|+.+|+ .++.||. +||||||+|.+.++|++|++.|||..+.
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 333344578999999 56 8999999999999998 4677763 4799999999999999999999999873
No 423
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.67 E-value=8.1e-06 Score=91.46 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=95.5
Q ss_pred CCcEEEEEeCCc-eEEeecCcCcceeeeecCC----CeeEEEecC---CCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005315 214 LGTYLATVHRQG-AAVWGGANTFNRLMRYAHP----QVKLIDFSP---GEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 285 (702)
Q Consensus 214 dg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~----~v~~i~fSp---dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g 285 (702)
++..|++++.++ +..+|.. +++.+-++... ....+..+| ++..++..+... ....+.|..||..+|
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~-TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~-----~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAK-TGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAE-----FGVRGYVTAYDAETG 193 (689)
T ss_dssp ETTEEEEECTTSEEEEEETT-TCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTT-----TCCBCEEEEEETTTC
T ss_pred ECCEEEEEccCCEEEEEECC-CCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCc-----cCCCCEEEEEECCCC
Confidence 355777777777 8899998 77777665432 122233344 555444332210 011278999999999
Q ss_pred cEEeeccCCC-ccc-c-------cC-CC--C------CCCCcccceEEEcCCCCcEEEEec-CC----------------
Q 005315 286 KVMRDFKGSA-DEF-A-------VG-GT--G------GVAGVSWPVFRWGGGKDKYFAKLG-KN---------------- 330 (702)
Q Consensus 286 ~~~~~~~~~~-~~~-~-------~~-~~--~------~~~~~~w~~~~~s~~dg~~la~~~-d~---------------- 330 (702)
+.+-.+.... ... . .+ .+ + .-.+..|..+.++| ++..++.+. ++
T Consensus 194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~ 272 (689)
T 1yiq_A 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNL 272 (689)
T ss_dssp CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCT
T ss_pred cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCce
Confidence 9887765311 000 0 00 00 0 01123465678899 888777776 54
Q ss_pred ---eEEEEecCCcccccceeeccCC---------eeEEEeCCCCC---eEEEEeecCCCCCCCcEEEEEecCCcceeeee
Q 005315 331 ---MISVYETESFTLIDKKSLKVEN---------VMDFSWSPTDP---IISLFVPELGGGNQPARVSLVQIPSKEELRQK 395 (702)
Q Consensus 331 ---~i~v~d~~~~~~~~~~~~~~~~---------v~~~~~sp~~~---~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 395 (702)
.|..+|..+++.+......... +.......+|+ .++. .+....++.++..+.+.+...
T Consensus 273 y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~-------~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 273 FLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQ-------APKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEE-------CCTTSEEEEEETTTCCEEEEE
T ss_pred eeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEE-------ECCCCeEEEEECCCCCEeccc
Confidence 3899999999888765432111 11111112443 4444 555667888888887766443
Q ss_pred e
Q 005315 396 N 396 (702)
Q Consensus 396 ~ 396 (702)
.
T Consensus 346 ~ 346 (689)
T 1yiq_A 346 G 346 (689)
T ss_dssp E
T ss_pred c
Confidence 3
No 424
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.67 E-value=2.3e-06 Score=81.49 Aligned_cols=126 Identities=10% Similarity=0.157 Sum_probs=84.8
Q ss_pred cceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCccc
Q 005315 235 FNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 311 (702)
Q Consensus 235 ~~~~~~~~~~~---v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w 311 (702)
.+.+.+++|.. ...+.|+ ++...++.+.+ +.+.|+++|+.+|+.++.+.......
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~--------g~S~v~~vD~~Tgkv~~~~~l~~~~F------------- 88 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLN--------GRSSIRKVDIESGKTLQQIELGKRYF------------- 88 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE-TTEEEEEEEET--------TEEEEEEECTTTCCEEEEEECCTTCC-------------
T ss_pred eEEEEEecCCCCcccceEEEE-CCEEEEECCCC--------CCceEEEEECCCCcEEEEEecCCccc-------------
Confidence 34566777764 6899999 67666666554 11489999999999999887654432
Q ss_pred ceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCc
Q 005315 312 PVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 389 (702)
Q Consensus 312 ~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 389 (702)
.....+ +++.|.... ++.+.+||..+++++....... ....++++++.|.. .++..+|+.+|..+.
T Consensus 89 -geGit~-~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~-------SdGs~~i~~iDp~T~ 156 (262)
T 3nol_A 89 -GEGISD-WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIM-------SDGTPVLRFLDPESL 156 (262)
T ss_dssp -EEEEEE-ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEE-------CCSSSEEEEECTTTC
T ss_pred -eeEEEE-eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEE-------ECCCCeEEEEcCCCC
Confidence 112233 444444334 9999999999998886654432 33445577888876 456778888887776
Q ss_pred ceeee
Q 005315 390 EELRQ 394 (702)
Q Consensus 390 ~~~~~ 394 (702)
+.+..
T Consensus 157 ~v~~~ 161 (262)
T 3nol_A 157 TPVRT 161 (262)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 65443
No 425
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.64 E-value=1.4e-05 Score=82.75 Aligned_cols=290 Identities=9% Similarity=0.045 Sum_probs=151.7
Q ss_pred CcEEEEEeCCc-eEEeecCcCcceeeeecC----------CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005315 215 GTYLATVHRQG-AAVWGGANTFNRLMRYAH----------PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 215 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~----------~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~ 283 (702)
+..|++++.++ +..+|.. +++.+-++.. ..........++..|+.++.+ +.|..+|..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~----------g~l~a~d~~ 121 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNAD-DGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK----------AQVYALNTS 121 (376)
T ss_dssp TTEEEEECTTSEEEEEETT-TCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT----------SEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEEcc-CCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC----------CEEEEEECC
Confidence 55666666665 7788887 6666555433 111111222245667777777 889999999
Q ss_pred CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCe-----eEEEe
Q 005315 284 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENV-----MDFSW 358 (702)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v-----~~~~~ 358 (702)
+|+.+..+........ .... . ++..++...++.|..+|..+++.+.......... .....
T Consensus 122 tG~~~W~~~~~~~~~~-------------~p~~-~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~ 186 (376)
T 3q7m_A 122 DGTVAWQTKVAGEALS-------------RPVV-S-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT 186 (376)
T ss_dssp TCCEEEEEECSSCCCS-------------CCEE-E-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE
T ss_pred CCCEEEEEeCCCceEc-------------CCEE-E-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE
Confidence 9998876655432210 1122 2 4444444448999999999998776554322111 11111
Q ss_pred CCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc-----------ccceeEEccCCCEEEEEEccccccccc
Q 005315 359 SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-----------SDCKMYWQSSGDYLAVKVDRYTKTKKS 427 (702)
Q Consensus 359 sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~g~~l~~~~~~~~~~~~~ 427 (702)
. +..+.+ + .....+..++..+.+.+-....... ...... -.+..+++++.++.
T Consensus 187 ~--~~~v~~-----g--~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~v~~~~~~g~----- 250 (376)
T 3q7m_A 187 A--FGAAVV-----G--GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV--VVNGVVFALAYNGN----- 250 (376)
T ss_dssp E--TTEEEE-----C--CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE--EETTEEEEECTTSC-----
T ss_pred E--CCEEEE-----E--cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE--EECCEEEEEecCcE-----
Confidence 1 234444 2 2234566677666554333221100 000001 12344444443322
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC---CCc
Q 005315 428 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---GKQ 504 (702)
Q Consensus 428 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~~ 504 (702)
+..++.... ...-... ......+.. ++..+++++.++ .|..+|..++. .+.... ...
T Consensus 251 ----l~~~d~~tG-~~~w~~~----~~~~~~~~~--~~~~l~~~~~~g---~l~~~d~~tG~------~~w~~~~~~~~~ 310 (376)
T 3q7m_A 251 ----LTALDLRSG-QIMWKRE----LGSVNDFIV--DGNRIYLVDQND---RVMALTIDGGV------TLWTQSDLLHRL 310 (376)
T ss_dssp ----EEEEETTTC-CEEEEEC----CCCEEEEEE--ETTEEEEEETTC---CEEEEETTTCC------EEEEECTTTTSC
T ss_pred ----EEEEECCCC-cEEeecc----CCCCCCceE--ECCEEEEEcCCC---eEEEEECCCCc------EEEeecccCCCc
Confidence 222222111 1111111 112233332 466777777777 78899987654 222222 222
Q ss_pred eeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeeccc--Ccee-eeEECCCCCEEEEEEeecccccccEEEEE
Q 005315 505 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--FMAT-DVEWDPTGRYVATAVTSVHEMENGFNIWS 578 (702)
Q Consensus 505 v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~--~~i~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 578 (702)
...+.. .+..|++++. +|.|..+|..+++.+..... ..+. .+.. .+..|+.++. ++.+..|+
T Consensus 311 ~~~~~~--~~~~l~v~~~---~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~-----~G~l~~~~ 375 (376)
T 3q7m_A 311 LTSPVL--YNGNLVVGDS---EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAK-----DGTVYSIT 375 (376)
T ss_dssp CCCCEE--ETTEEEEECT---TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBT-----TSCEEEEE
T ss_pred ccCCEE--ECCEEEEEeC---CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeC-----CCEEEEEe
Confidence 333333 3567777776 89999999999988765332 2222 2222 2456777777 78888876
No 426
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.62 E-value=5.4e-06 Score=79.93 Aligned_cols=181 Identities=10% Similarity=0.031 Sum_probs=120.9
Q ss_pred cceEEECCCCcEEEEEeC---CceEEeecCcCcceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005315 206 ESFVQWSPLGTYLATVHR---QGAAVWGGANTFNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 279 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~~---~~i~iw~~~~~~~~~~~~~~~~---v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~v 279 (702)
...++|+|||.+.++.+. +.|.+.|.. +++.+.++..+. ...++++ |+.|..+.... +.+.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~-tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~---------~~v~v 90 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQ-TGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK---------NIGFI 90 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETT-TCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC---------SEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECC-CCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC---------CEEEE
Confidence 357899999866655543 338899999 888887765332 3345554 55555554331 78999
Q ss_pred EEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeecc-----CCe
Q 005315 280 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENV 353 (702)
Q Consensus 280 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~-----~~v 353 (702)
+|..+++.+.++... ... ....++ ||+.+..+. ++.|.++|..+.+.+....... ..+
T Consensus 91 iD~~t~~v~~~i~~g-~~~--------------g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQ-MKD--------------GWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp EETTTTEEEEEEECC-SSS--------------CCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EECCCCcEEEEEECC-CCC--------------eEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 999999999988654 111 124566 777666555 8999999999887765543322 236
Q ss_pred eEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc-------------ccceeEEccCCCEEEEEEcc
Q 005315 354 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-------------SDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 354 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~s~~g~~l~~~~~~ 420 (702)
..+.|. +|...+. ......|..++..+.+.+....+... ....++|+|+++.+++....
T Consensus 155 nele~~-dg~lyvn-------~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 155 NELEYI-NGEVWAN-------IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp EEEEEE-TTEEEEE-------ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEEE-CCEEEEe-------cCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 678888 6643332 23345799999999887776654311 22467899999988887765
Q ss_pred cc
Q 005315 421 YT 422 (702)
Q Consensus 421 ~~ 422 (702)
..
T Consensus 227 ~~ 228 (266)
T 2iwa_A 227 WP 228 (266)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 427
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.62 E-value=4.7e-05 Score=74.44 Aligned_cols=252 Identities=10% Similarity=-0.007 Sum_probs=143.1
Q ss_pred cEEEEecCCeEEEEecCCccccc---c--eeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeee
Q 005315 322 KYFAKLGKNMISVYETESFTLID---K--KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 396 (702)
Q Consensus 322 ~~la~~~d~~i~v~d~~~~~~~~---~--~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 396 (702)
.+|..+..+.|+.+++....... . .......+..++|+|++..|.+. .....+|+.++...........
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~------d~~~~~I~~~~~~g~~~~~~~~ 75 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWT------DISEPSIGRASLHGGEPTTIIR 75 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEE------ETTTTEEEEEESSSCCCEEEEC
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEE------ECCCCEEEEEecCCCCcEEEEE
Confidence 45555555678888877543210 0 11122346789999987766652 2234578888776543211111
Q ss_pred ecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCC
Q 005315 397 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 476 (702)
Q Consensus 397 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 476 (702)
........+++++++..|++...... .++.++..+.....+ ..........++++|++.+|+++.....
T Consensus 76 ~~~~~p~~ia~d~~~~~lyv~d~~~~----------~I~~~~~~g~~~~~~-~~~~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 76 QDLGSPEGIALDHLGRTIFWTDSQLD----------RIEVAKMDGTQRRVL-FDTGLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEE-ECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred CCCCCccEEEEEecCCeEEEEECCCC----------EEEEEEcCCCCEEEE-EECCCCCccEEEEeeCCCEEEEEECCCC
Confidence 11123345678888777777654322 333333322221212 2111246788999997766666654311
Q ss_pred CCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc-cCceeeeEECC
Q 005315 477 RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDP 555 (702)
Q Consensus 477 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~-~~~i~~~~~sp 555 (702)
...|..+++.... ...+........+.++++|++.+|+++..+ .+.|..+++.+........ ......++.
T Consensus 145 ~~~I~~~~~dg~~----~~~~~~~~~~~P~gia~d~~~~~lyv~d~~--~~~I~~~~~~g~~~~~~~~~~~~P~gi~~-- 216 (267)
T 1npe_A 145 NPKIETSHMDGTN----RRILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPGRRKVLEGLQYPFAVTS-- 216 (267)
T ss_dssp SCEEEEEETTSCC----CEEEECTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEEEEEEEECCCSEEEEEE--
T ss_pred CcEEEEEecCCCC----cEEEEECCCCCCcEEEEcCCCCEEEEEECC--CCEEEEEecCCCceEEEecCCCCceEEEE--
Confidence 1277777764321 112222223356889999998888777652 5789999998544322211 123345554
Q ss_pred CCCEEEEEEeecccccccEEEEEec-cceeeeeccc---cEeeEEEeeCCC
Q 005315 556 TGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD---HFFQFLWRPRPP 602 (702)
Q Consensus 556 dg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~~~~---~i~~~~w~p~~~ 602 (702)
++.+|+.+... .+.|.+++.. |+.+.....+ ..+.+++.|++.
T Consensus 217 d~~~lyva~~~----~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 217 YGKNLYYTDWK----TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTEEEEEETT----TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred eCCEEEEEECC----CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 45666666642 5789999986 5666555433 478899998865
No 428
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.61 E-value=5.2e-08 Score=97.26 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=63.0
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhccc-c-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIK-E-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~-~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-.+.|||+||| .++++++..+|+.+| + ..+.++.|+ .|+++|||||+|.+.++|..|+..|||..++++ .+.|..
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~ 193 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY-TLVTKV 193 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc-EEEEEE
Confidence 46899999999 999999999999999 7 689999997 599999999999999999999999999999876 777764
Q ss_pred c
Q 005315 135 F 135 (702)
Q Consensus 135 ~ 135 (702)
.
T Consensus 194 a 194 (292)
T 2ghp_A 194 S 194 (292)
T ss_dssp C
T ss_pred C
Confidence 3
No 429
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.60 E-value=1.5e-08 Score=92.31 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=58.6
Q ss_pred CcEEEECCCC-CCChhhHHHhHhcccc-ccEE-----eecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLW-----MPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 131 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~-----~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~ 131 (702)
++.|||+||| .++++++.++|+.+++ .++. ...+..+++++|||||+|.++++|..|+ .+||..++++ .+.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~-~i~ 81 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ-SLK 81 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTE-ECE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCc-eee
Confidence 5799999999 9999999999998743 1211 1111124667999999999999999999 8999999877 777
Q ss_pred EEe
Q 005315 132 VNM 134 (702)
Q Consensus 132 v~~ 134 (702)
|..
T Consensus 82 v~~ 84 (172)
T 2g4b_A 82 IRR 84 (172)
T ss_dssp EEC
T ss_pred ecC
Confidence 764
No 430
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.60 E-value=3.8e-08 Score=92.59 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=55.2
Q ss_pred CCcEEEECCCC-CC---------ChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCcc
Q 005315 58 FGNIIVVDNLP-VV---------PKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 124 (702)
Q Consensus 58 ~~~~~~v~~lp-~~---------~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 124 (702)
-.+.|||+||| .+ +++.|..+|+.+|+ .+|.|+. +||||||+|.+.++|+.|++.|||..+
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 36799999999 77 69999999999998 5777774 589999999999999999999999999
No 431
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.60 E-value=4.6e-06 Score=94.74 Aligned_cols=165 Identities=7% Similarity=-0.059 Sum_probs=95.7
Q ss_pred CCCc-ccceEEEC-CCCcEEEEEeCC----c--eEEeecCcCc-ceeee-ecCCCeeEEEecCCCCEEEEEcCCCCCCCc
Q 005315 201 RSYW-TESFVQWS-PLGTYLATVHRQ----G--AAVWGGANTF-NRLMR-YAHPQVKLIDFSPGEKYLVTYSSHEPSNPR 270 (702)
Q Consensus 201 ~~~~-~v~~v~~S-pdg~~lat~~~~----~--i~iw~~~~~~-~~~~~-~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~ 270 (702)
+|.. .+..++|| |||++||++... . |.++++. ++ +.+.. +. .....+.|||||+.|+....+..
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~-~g~~~l~~~~~-~~~~~~~WspDg~~l~y~~~d~~---- 243 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS-DPSQTIADKVS-GTNGEIVWGPDHTSLFYVTKDET---- 243 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETT-CTTCCCCCCEE-EECSCCEECSSTTEEEEEEECTT----
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECC-CCCEeCCcccc-CceeeEEEecCCCEEEEEEECCC----
Confidence 3443 67889999 999999987542 1 7788998 55 42211 11 11457899999999988776521
Q ss_pred CCCccEEEEEEccCCcE--EeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec----CCeEEEEecCCccc-c
Q 005315 271 DANRVVINIFDVRTGKV--MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTL-I 343 (702)
Q Consensus 271 ~~~~~~i~vwd~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~----d~~i~v~d~~~~~~-~ 343 (702)
.....|+++++.++.. ...+....... +..+.||| ||++|+... ...|.++++.++.. .
T Consensus 244 -~~~~~v~~~~lgt~~~~~~lv~~~~~~~~------------~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 244 -LRENKVWRHVMGKLQSEDVCLYEEHNPLF------------SAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp -CCEEEEEEEETTSCGGGCEEEEECCCTTC------------EEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCC
T ss_pred -CCCCEEEEEECCCCchhcEEEEecCCCce------------EEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCc
Confidence 1114788899877642 22222211111 11578999 999988765 35688888876521 1
Q ss_pred --cceee-ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCC
Q 005315 344 --DKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 388 (702)
Q Consensus 344 --~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 388 (702)
..... ......++.|+. |..|++.+... .....+|+.++...
T Consensus 310 ~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~--~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 310 TLEIVRPREKGVRYDVQMHG-TSHLVILTNEG--GAVNHKLLIAPRGQ 354 (751)
T ss_dssp CEEESSCCCTTCCEEEEEET-TTEEEEEECTT--TCTTCEEEEEETTS
T ss_pred eeEEeecCCCCceEEEeeee-CCEEEEEeCCC--CCCCcEEEEEcCCC
Confidence 11101 111223333332 66666543211 13567888888754
No 432
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.60 E-value=1.2e-08 Score=95.52 Aligned_cols=77 Identities=14% Similarity=0.244 Sum_probs=60.9
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEE-----eecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLW-----MPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 130 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~-----~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~ 130 (702)
.++.|||+||| .+++++|.++|+.+++ .++. ...+..+++++|||||+|.++++|.+|+ .|||..++++ .+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~-~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ-SL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTE-EE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCc-eE
Confidence 36899999999 9999999999998754 1221 1112235778999999999999999999 8999999877 78
Q ss_pred EEEecc
Q 005315 131 AVNMFD 136 (702)
Q Consensus 131 ~v~~~~ 136 (702)
.|....
T Consensus 81 ~v~~~~ 86 (198)
T 2yh0_A 81 KIRRPH 86 (198)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 887543
No 433
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.59 E-value=1.7e-05 Score=88.60 Aligned_cols=307 Identities=11% Similarity=0.065 Sum_probs=164.3
Q ss_pred CCcEEEEEeCCc-eEEeecCcCcceeeeecCC-C---eeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc
Q 005315 214 LGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-Q---VKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK 286 (702)
Q Consensus 214 dg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~---v~~i~fSp--dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~ 286 (702)
++..|++++.++ +..+|.. +++.+-++... . ...+.-+| .+..+++++.... ....+.|+.||..+|+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~-tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~----~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAA-TGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE----YGVRGYITAYDAETGE 201 (677)
T ss_dssp ETTEEEEECTTSEEEEEETT-TCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT----TCCBCEEEEEETTTCC
T ss_pred ECCEEEEEcCCCEEEEEECC-CCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc----cCCCCEEEEEECCCCc
Confidence 456777777776 8899998 77777666432 1 01111112 2344444443100 0112789999999999
Q ss_pred EEeeccCCCcccccCC----------C----C-----CCCCcccceEEEcCCCCcEEEEec-CC----------------
Q 005315 287 VMRDFKGSADEFAVGG----------T----G-----GVAGVSWPVFRWGGGKDKYFAKLG-KN---------------- 330 (702)
Q Consensus 287 ~~~~~~~~~~~~~~~~----------~----~-----~~~~~~w~~~~~s~~dg~~la~~~-d~---------------- 330 (702)
.+..+........... . + ...+..|..+.+++ ++..+..+. ++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCe
Confidence 9877754322100000 0 0 00112355678899 888777665 43
Q ss_pred ---eEEEEecCCcccccceeeccC---------CeeEEEeCCCC---CeEEEEeecCCCCCCCcEEEEEecCCcceeeee
Q 005315 331 ---MISVYETESFTLIDKKSLKVE---------NVMDFSWSPTD---PIISLFVPELGGGNQPARVSLVQIPSKEELRQK 395 (702)
Q Consensus 331 ---~i~v~d~~~~~~~~~~~~~~~---------~v~~~~~sp~~---~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 395 (702)
.|..+|..+++.+........ ...-+....+| ..+++ .+....++.++..+.+.+...
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~-------~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH-------APKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE-------CCTTSEEEEEETTTCCEEEEE
T ss_pred eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE-------ECCCCEEEEEECCCCCEeccc
Confidence 488999999988776543211 11112222356 44555 455667888888887766554
Q ss_pred eecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC--ceeEEEEeeCCcEEEEEEc
Q 005315 396 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 396 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~ 473 (702)
.+...... -.+...|+.+.....+ + .+.+ ....++..+ .-..++++|++.++++...
T Consensus 354 ~~~~~~~~-~~~d~~g~~~~~~~~~--------~----------~~~~--~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~ 412 (677)
T 1kb0_A 354 NFVPVNWA-SGYDKHGKPIGIAAAR--------D----------GSKP--QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ 412 (677)
T ss_dssp ESSCCSSE-EEECTTSCEEECGGGG--------C----------TTSC--EECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred cccccCcc-cccCCCCceeeccccC--------c----------CCCc--cEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence 43221100 0011122211100000 0 0000 001111011 1125677887777766543
Q ss_pred CC----------------------------------------CCCeEEEEEeecccCcCceEEEEEcC-CCceeEEEEcc
Q 005315 474 DS----------------------------------------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSP 512 (702)
Q Consensus 474 d~----------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~sp 512 (702)
+. +...|..||+.+++ .+-++. +.+.....+++
T Consensus 413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~------~~W~~~~~~~~~~g~~~~ 486 (677)
T 1kb0_A 413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK------AAWSVEHVSPWNGGTLTT 486 (677)
T ss_dssp ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE------EEEEEEESSSCCCCEEEE
T ss_pred hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc------EEeecCCCCCCcCcceEe
Confidence 20 01268888887655 222222 23445556778
Q ss_pred CCCEEEEEeccCCCceEEEEECCCcceeeeccc---CceeeeEECCCCCEEEEE
Q 005315 513 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGRYVATA 563 (702)
Q Consensus 513 dg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~---~~i~~~~~spdg~~l~t~ 563 (702)
.|..+++++. +|.+++||..+++.+.+... ...+-+.|+++|+.++..
T Consensus 487 ~g~~v~~g~~---dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 487 AGNVVFQGTA---DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp TTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCCEEEEECC---CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 8888888876 99999999999999876432 233456778899854443
No 434
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.57 E-value=7e-05 Score=73.21 Aligned_cols=249 Identities=8% Similarity=-0.033 Sum_probs=136.2
Q ss_pred CcEEEEEeCCceEEeecCcCcce------eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEE
Q 005315 215 GTYLATVHRQGAAVWGGANTFNR------LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 288 (702)
Q Consensus 215 g~~lat~~~~~i~iw~~~~~~~~------~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~ 288 (702)
|.+|.++..+.|..++..+.... +...+...+..++|+|++.+|..+... .+.|.+++...+...
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~---------~~~I~~~~~~g~~~~ 71 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS---------EPSIGRASLHGGEPT 71 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT---------TTEEEEEESSSCCCE
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC---------CCEEEEEecCCCCcE
Confidence 56777777666888887733221 122222347899999987766655543 178999998655433
Q ss_pred eeccCC-CcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeE
Q 005315 289 RDFKGS-ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPII 365 (702)
Q Consensus 289 ~~~~~~-~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 365 (702)
..+... ..+. .+++++ ++..|..+. .+.|.++++..................++++|++..|
T Consensus 72 ~~~~~~~~~p~--------------~ia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~l 136 (267)
T 1npe_A 72 TIIRQDLGSPE--------------GIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL 136 (267)
T ss_dssp EEECTTCCCEE--------------EEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred EEEECCCCCcc--------------EEEEEe-cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEE
Confidence 222211 1121 578888 766555444 7899999986432111011122357889999976665
Q ss_pred EEEeecCCCCCCCcEEEEEecCCcc--eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005315 366 SLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 443 (702)
Q Consensus 366 a~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 443 (702)
.+. .......+|+.++..... .+.... -.....+++++++.+|++...... .++.++..+..
T Consensus 137 yv~----~~~~~~~~I~~~~~dg~~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~----------~I~~~~~~g~~ 200 (267)
T 1npe_A 137 YWT----DWNRDNPKIETSHMDGTNRRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTH----------RAECLNPAQPG 200 (267)
T ss_dssp EEE----ECCSSSCEEEEEETTSCCCEEEECTT--CSCEEEEEEETTTTEEEEEETTTT----------EEEEEETTEEE
T ss_pred EEE----ECCCCCcEEEEEecCCCCcEEEEECC--CCCCcEEEEcCCCCEEEEEECCCC----------EEEEEecCCCc
Confidence 541 111124567777654322 111111 123345688999888877765432 33333332221
Q ss_pred eeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCC---ceeEEEEccCCC
Q 005315 444 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK---QANALFWSPSGR 515 (702)
Q Consensus 444 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~ 515 (702)
...+ +.. ......++. ++..++++...+ ..|..++..++. .+..+... ....+++.|++.
T Consensus 201 ~~~~-~~~-~~~P~gi~~--d~~~lyva~~~~--~~v~~~d~~~g~------~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 201 RRKV-LEG-LQYPFAVTS--YGKNLYYTDWKT--NSVIAMDLAISK------EMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEE-EEC-CCSEEEEEE--ETTEEEEEETTT--TEEEEEETTTTE------EEEEECCSSCCCCCCEEEECSCC
T ss_pred eEEE-ecC-CCCceEEEE--eCCEEEEEECCC--CeEEEEeCCCCC------ceEEEccccccccceeeecCccC
Confidence 1111 111 223345554 466676666543 278888876543 45555422 357788888764
No 435
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.56 E-value=1e-07 Score=91.09 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=63.7
Q ss_pred CCcEEEECCCC--CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP--VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp--~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-++.|||+||| .++++++.++|+.+|+ .++.|+.|+ +|||||+|.+.++|.+|++.|||..+.++ .+.|..
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~-~l~v~~ 106 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK-PIRITL 106 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSS-BCEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCe-EEEEEE
Confidence 46899999999 4999999999999988 578888874 89999999999999999999999999876 777764
Q ss_pred c
Q 005315 135 F 135 (702)
Q Consensus 135 ~ 135 (702)
.
T Consensus 107 a 107 (229)
T 2adc_A 107 S 107 (229)
T ss_dssp C
T ss_pred e
Confidence 3
No 436
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.55 E-value=1.4e-05 Score=75.34 Aligned_cols=129 Identities=12% Similarity=0.134 Sum_probs=84.5
Q ss_pred cceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCccc
Q 005315 235 FNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 311 (702)
Q Consensus 235 ~~~~~~~~~~~---v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w 311 (702)
.+.+.+++|+. ...+.|++ +....+.+.. +.+.|+++|+.+|+.++....+..... .
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~--------g~S~v~~vD~~tgkv~~~~~l~~~~fg-------e---- 68 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLR-GHLYESTGET--------GRSSVRKVDLETGRILQRAEVPPPYFG-------A---- 68 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEET-TEEEEEECCT--------TSCEEEEEETTTCCEEEEEECCTTCCE-------E----
T ss_pred eEEEEEcCCCCccccccEEEEC-CEEEEECCCC--------CCceEEEEECCCCCEEEEEeCCCCcce-------e----
Confidence 45667777775 78999987 5555555543 125899999999999998876554331 0
Q ss_pred ceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcce
Q 005315 312 PVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 391 (702)
Q Consensus 312 ~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 391 (702)
.+.... +.-|.++..++.+.+||..+++++........+ ..+++++..|.+ .++..+|+.+|..+.+.
T Consensus 69 -Gi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~v-------Sdgs~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 69 -GIVAWR-DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYM-------SDGTAVIRKLDPDTLQQ 136 (243)
T ss_dssp -EEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEE-------ECSSSEEEEECTTTCCE
T ss_pred -EEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEE-------ECCCCeEEEEeCCCCeE
Confidence 223323 222333333999999999999888765543333 344567777776 45677888888777665
Q ss_pred eeee
Q 005315 392 LRQK 395 (702)
Q Consensus 392 ~~~~ 395 (702)
+...
T Consensus 137 ~~~I 140 (243)
T 3mbr_X 137 VGSI 140 (243)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 437
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.54 E-value=1.4e-07 Score=93.52 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=62.4
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
-+++|||+||| .+++++|.++|+.+|. ..+.|+.++ +|||||+|.+.++|..|++.|||..++..+.|+|..
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 36789999999 9999999999999888 477787553 699999999999999999999999998334777753
No 438
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.53 E-value=8.6e-08 Score=89.50 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=63.0
Q ss_pred CcEEEECCCC--CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 59 GNIIVVDNLP--VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 59 ~~~~~v~~lp--~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
++.|||+||| .++++++..+|+.+|. ..+.|+.|+ +|||||+|.++++|..|++.|||..++++ .+.|...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK-PIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSC-CCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCe-EEEEEEe
Confidence 4789999999 4999999999999988 588888874 89999999999999999999999999876 6777653
No 439
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.50 E-value=1.4e-05 Score=80.94 Aligned_cols=263 Identities=10% Similarity=-0.069 Sum_probs=146.3
Q ss_pred CcccceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005315 203 YWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 280 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~--v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vw 280 (702)
...+.++...++|.+++. ..+ +..+|.. +..+..+.... .....+. +..|..++.+ +.|..+
T Consensus 59 ~~~~~~~~~~~~g~l~v~-t~~-l~~~d~~--g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~----------~~l~~~ 122 (330)
T 3hxj_A 59 EIIECRPSIGKDGTIYFG-SDK-VYAINPD--GTEKWRFDTKKAIVSDFTIF--EDILYVTSMD----------GHLYAI 122 (330)
T ss_dssp GEEEECCEETTTTEECCS-SCE-EEEECCC--GGGGGGSCC-----CCEEEE--TTEEEEECTT----------SEEEEE
T ss_pred CCcccceEEecCCcEEEe-cCc-EEEECCC--CcEEEEEECCCCcccCceEE--CCEEEEEecC----------CEEEEE
Confidence 345677888888875553 334 7777754 33333332221 3333333 4556667767 789999
Q ss_pred EccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCC
Q 005315 281 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSP 360 (702)
Q Consensus 281 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp 360 (702)
|.. |+.+..+..+..... .+...+ ++.+++...++.|..|+.. ++.+.........+.++...+
T Consensus 123 d~~-g~~~~~~~~~~~~~~-------------~~~~~~-~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~ 186 (330)
T 3hxj_A 123 NTD-GTEKWRFKTKKAIYA-------------TPIVSE-DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK 186 (330)
T ss_dssp CTT-SCEEEEEECSSCCCS-------------CCEECT-TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT
T ss_pred cCC-CCEEEEEcCCCceee-------------eeEEcC-CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC
Confidence 987 877666554332221 456677 7776665558999999988 666554444444566777777
Q ss_pred CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecC
Q 005315 361 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 440 (702)
Q Consensus 361 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 440 (702)
++.+.+. + ..++.++ ++.+.+............+...++|... +++.++ .++.++..
T Consensus 187 ~g~l~v~------t----~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~-----------gl~~~~~~ 243 (330)
T 3hxj_A 187 DGTIYFG------S----DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDG-----------HLYAINPD 243 (330)
T ss_dssp TCCEEEE------S----SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTT-----------EEEEECTT
T ss_pred CCEEEEE------e----CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCC-----------eEEEECCC
Confidence 7776553 2 4567777 5544333333222233445566676543 343322 23333333
Q ss_pred CcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEE
Q 005315 441 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLA 520 (702)
Q Consensus 441 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 520 (702)
+........ ....+.++...++| .+.+++.++ .|..++. ++. ......+....+.++...++|+..+ +
T Consensus 244 g~~~~~~~~--~~~~~~~~~~~~~g-~l~v~t~~g---gl~~~d~-~g~----~~~~~~~~~~~~~~~~~d~~g~l~~-g 311 (330)
T 3hxj_A 244 GTEKWRFKT--GKRIESSPVIGNTD-TIYFGSYDG---HLYAINP-DGT----EKWNFETGSWIIATPVIDENGTIYF-G 311 (330)
T ss_dssp SCEEEEEEC--SSCCCSCCEECTTS-CEEEECTTC---EEEEECT-TSC----EEEEEECSSCCCSCCEECTTCCEEE-E
T ss_pred CCEeEEeeC--CCCccccceEcCCC-eEEEecCCC---CEEEECC-CCc----EEEEEEcCCccccceEEcCCCEEEE-E
Confidence 322222222 12233445555555 566667666 6888874 322 1122334445677788888887554 5
Q ss_pred eccCCCceEEEEECC
Q 005315 521 GLKGFNGQLEFYNVD 535 (702)
Q Consensus 521 ~~~~~dg~v~i~d~~ 535 (702)
+. +|.+.+....
T Consensus 312 t~---~G~~~~~~~~ 323 (330)
T 3hxj_A 312 TR---NGKFYALFNL 323 (330)
T ss_dssp CT---TSCEEEEEC-
T ss_pred cC---CCeEEEEecc
Confidence 55 8888887765
No 440
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.50 E-value=2.6e-07 Score=90.24 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=62.9
Q ss_pred CCcEEEECCCC-CCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEec
Q 005315 58 FGNIIVVDNLP-VVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 135 (702)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~ 135 (702)
-.+.|||+||| .++++++..+|+.+|. ..+.|+. ++|||||+|.++++|..|+..+||..+.++ .+.|...
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~-~l~v~~a 93 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSR-PLRIRFA 93 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTE-ECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCc-eeEeeec
Confidence 36799999999 9999999999999988 4777753 479999999999999999999999999876 7777654
Q ss_pred c
Q 005315 136 D 136 (702)
Q Consensus 136 ~ 136 (702)
.
T Consensus 94 ~ 94 (261)
T 3sde_A 94 T 94 (261)
T ss_dssp C
T ss_pred c
Confidence 3
No 441
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.47 E-value=0.00048 Score=78.88 Aligned_cols=374 Identities=6% Similarity=0.034 Sum_probs=202.9
Q ss_pred ccccccccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCC-c---ccceEEECCCCcEEEEEeCCceEEeecCcCc
Q 005315 160 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSY-W---TESFVQWSPLGTYLATVHRQGAAVWGGANTF 235 (702)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~---~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~ 235 (702)
..+.+.+.|++|+ .++ ...++ ...|+. ...+. ..+.... . .|.++...++|.+.+... .|+.+|+.. +.
T Consensus 88 n~I~~i~~d~~g~-lWi-gT~~G-l~~yd~-~~~~f-~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~-~gl~~~~~~-~~ 160 (795)
T 4a2l_A 88 DISRIVKTDSQGR-VWI-GTRDG-LSRYDE-EKDIF-QNFFYEKNGKHLQVNGIEEISPEQLLISTP-EGLIMFDIK-ES 160 (795)
T ss_dssp SCEEEEEECTTSC-EEE-EESSC-EEEEET-TTTEE-EEECCEETTEECCCCEEEEEETTEEEEEET-TEEEEEETT-TT
T ss_pred cceeEEEECCCCC-EEE-EeCCc-hheeCC-CCCeE-EeccccccCCCceEEEEEECCCCCEEEEEC-CceEEEECC-CC
Confidence 4456666777665 333 33333 446665 22221 1221111 1 188899999998766544 789999976 43
Q ss_pred ceeeeec----CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCC-CcccccCCCCCCCCc
Q 005315 236 NRLMRYA----HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS-ADEFAVGGTGGVAGV 309 (702)
Q Consensus 236 ~~~~~~~----~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 309 (702)
.. ..+. ... |.++...++|...+..... -|..|+..+++........ ...+
T Consensus 161 ~~-~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~-----------Gl~~~~~~~~~~~~~~~~~~~~~i----------- 217 (795)
T 4a2l_A 161 KF-IDDSFSTAMHKTIASTLYRQGDQIYIGTSTD-----------GLYTYSITQKTFEKVIPILGTKQI----------- 217 (795)
T ss_dssp EE-ECSSSCHHHHTCCEEEEEEETTEEEEEESSS-----------CEEEEETTTCCEEECC----CCCE-----------
T ss_pred EE-EeccCCCCCCcceEEEEECCCCCEEEEECCC-----------CEEEEeCCCCeEEEecCCCCCCee-----------
Confidence 32 2221 123 8889888888766643333 4888997776654322111 1111
Q ss_pred ccceEEEcCCCCcEEEEecCCeEEEEecCCcccccce-------eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEE
Q 005315 310 SWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK-------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVS 382 (702)
Q Consensus 310 ~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 382 (702)
.++...+ ++.+.+...++.|.+|+..++....-. .+....|.++...++|.+.+. +.+ -|.
T Consensus 218 --~~i~~d~-~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig------t~~---Gl~ 285 (795)
T 4a2l_A 218 --QAILQQS-PTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG------TFN---DLN 285 (795)
T ss_dssp --EEEEEEE-TTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE------ESS---CEE
T ss_pred --EEEEEcC-CCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE------eCC---hhh
Confidence 1455566 777666554556888987765432111 112345888888888876553 222 256
Q ss_pred EEecCCcceeee-------eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-----
Q 005315 383 LVQIPSKEELRQ-------KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD----- 450 (702)
Q Consensus 383 ~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~----- 450 (702)
.++......... ..+.......+...++|... +++..+. +..++... .........
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~G---------l~~~~~~~--~~~~~~~~~~~~~~ 353 (795)
T 4a2l_A 286 IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGG---------LNYYHPIR--NRFKNIRNIPYKNS 353 (795)
T ss_dssp EEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSC---------EEEECGGG--GSSEEECCCTTSSS
T ss_pred eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCC---------eEEeCCCc--ccceEEcCCCCCCC
Confidence 666544332111 01112223344556666533 3333221 22332211 111111100
Q ss_pred CCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEE--------EcCCCceeEEEEccCCCEEEEEec
Q 005315 451 NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT--------TLKGKQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 451 ~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~--------~~~~~~v~~~~~spdg~~l~~~~~ 522 (702)
-....|.++...++|... +++.++ -|..|+..++. +.... .+....|.+++..++|+.|.+++.
T Consensus 354 l~~~~V~~i~~d~~g~lW-iGt~~~---Gl~~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~ 425 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKNLW-IGTNDG---GLNLYNPITQR----FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH 425 (795)
T ss_dssp CSCSSEEEEEECTTSCEE-EEESSS---CEEEECTTTCC----EEEECCC------CCSCSCEEEEEEETTTTEEEEEET
T ss_pred CCCCeeEEEEECCCCCEE-EEECCC---CeEEEcCCCCc----EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC
Confidence 014568889888888644 456554 47888765432 11221 123456888999999985566665
Q ss_pred cCCCceEEEEECCCcceeeec------ccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee---------
Q 005315 523 KGFNGQLEFYNVDELETMATA------EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT--------- 587 (702)
Q Consensus 523 ~~~dg~v~i~d~~~~~~~~~~------~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~--------- 587 (702)
++.|..||..+++..... ....|.++..+++|+..+. +. +++.+|+.........
T Consensus 426 ---~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~------~Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 426 ---AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL------SALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp ---TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES------SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred ---cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec------CceeEEeCCCCeEEEcccccccccc
Confidence 678999998876544321 2356888999998885443 33 4678888664433222
Q ss_pred ccccEeeEEEeeCCCCCC
Q 005315 588 LKDHFFQFLWRPRPPSFL 605 (702)
Q Consensus 588 ~~~~i~~~~w~p~~~~l~ 605 (702)
....+.++...+++...+
T Consensus 496 ~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 496 VSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp CCCCEEEEEECTTCCEEE
T ss_pred CCceEEEEEECCCCCEEE
Confidence 124567777777665443
No 442
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.47 E-value=2.2e-05 Score=74.71 Aligned_cols=181 Identities=12% Similarity=0.145 Sum_probs=121.4
Q ss_pred cceEEECCCCcEEEEEeCCc---eEEeecCcCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005315 206 ESFVQWSPLGTYLATVHRQG---AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 281 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~~~~---i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd 281 (702)
...+.|+ +|.++.+.+..| |+++|.. +++.+.+...+. .....+.+++..|....... +.+.+||
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~---------~~v~v~D 113 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIE-SGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN---------GLGFVWN 113 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTT-TCCEEEEEECCTTCCEEEEEEETTEEEEEESSS---------SEEEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECC-CCcEEEEEecCCccceeEEEEeCCEEEEEEeeC---------CEEEEEE
Confidence 4578898 777777776653 8899999 888888776443 44433444555555554321 6899999
Q ss_pred ccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeecc-----CCeeE
Q 005315 282 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVMD 355 (702)
Q Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~-----~~v~~ 355 (702)
..+++.+.++...... | .+ ++ |++.|+.+. ++.|.++|..+++.+....... ..++.
T Consensus 114 ~~t~~~~~ti~~~~eG-------------~-gl--t~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 114 IRNLRQVRSFNYDGEG-------------W-GL--TH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE 176 (262)
T ss_dssp TTTCCEEEEEECSSCC-------------C-CE--EE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred CccCcEEEEEECCCCc-------------e-EE--ec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence 9999999999865422 3 23 35 777666655 8889999999988776554422 33556
Q ss_pred EEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc------------ccceeEEccCCCEEEEEEcccc
Q 005315 356 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV------------SDCKMYWQSSGDYLAVKVDRYT 422 (702)
Q Consensus 356 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------~~~~~~~s~~g~~l~~~~~~~~ 422 (702)
+.|. +|...+. .-....|..+|..+++.+....+... ....++|+|+++.|++....-.
T Consensus 177 Le~~-~G~lyan-------~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp 247 (262)
T 3nol_A 177 LEWV-DGEIFAN-------VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP 247 (262)
T ss_dssp EEEE-TTEEEEE-------ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred eEEE-CCEEEEE-------EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 7886 6654432 22344788888888877665554211 1134789999999988877655
No 443
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.45 E-value=9.4e-06 Score=77.18 Aligned_cols=124 Identities=6% Similarity=0.053 Sum_probs=81.8
Q ss_pred ceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccc
Q 005315 236 NRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 312 (702)
Q Consensus 236 ~~~~~~~~~~---v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~ 312 (702)
+.+.+++|+. ...+.|+. +...++.+.+ +.|+++|+.+|+.++.+ ....... .
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~----------g~v~~iD~~Tgkv~~~~-l~~~~Fg-------e----- 99 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQ----------GTLRQLSLESAQPVWME-RLGNIFA-------E----- 99 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTT----------TEEEECCSSCSSCSEEE-ECTTCCE-------E-----
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCC----------CEEEEEECCCCcEEeEE-CCCCcce-------e-----
Confidence 4566777764 67899983 5666666666 78999999999988887 4332220 0
Q ss_pred eEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCccee
Q 005315 313 VFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 392 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (702)
.+.... +.-|+++..++.+.+||..+++++........+ ..++++++.|.. .++..+|+.+|..+.+.+
T Consensus 100 Git~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~v-------SdGs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 100 GLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG---WGLCYWNGKLVR-------SDGGTMLTFHEPDGFALV 168 (268)
T ss_dssp EEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC---CCEEEETTEEEE-------ECSSSEEEEECTTTCCEE
T ss_pred EEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce---eEEecCCCEEEE-------ECCCCEEEEEcCCCCeEE
Confidence 234434 333444444999999999999888765543222 334467777776 446778888887776654
Q ss_pred ee
Q 005315 393 RQ 394 (702)
Q Consensus 393 ~~ 394 (702)
..
T Consensus 169 ~~ 170 (268)
T 3nok_A 169 GA 170 (268)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 444
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.43 E-value=4.8e-07 Score=74.75 Aligned_cols=73 Identities=7% Similarity=0.043 Sum_probs=57.4
Q ss_pred CcEEEECCCCCCCh-----------hhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005315 59 GNIIVVDNLPVVPK-----------EKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 126 (702)
Q Consensus 59 ~~~~~v~~lp~~~~-----------~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 126 (702)
+.+|++.|+=...+ ++++.+|+.+|+ .++.++.+. ++||+||+|.++++|.+|++.|||..|++
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56777777763322 355677778887 588887653 59999999999999999999999999998
Q ss_pred eeEEEEEecc
Q 005315 127 AHIFAVNMFD 136 (702)
Q Consensus 127 ~h~~~v~~~~ 136 (702)
+ .+.|..+.
T Consensus 83 R-~i~v~~~~ 91 (114)
T 3s6e_A 83 K-MITAAYVP 91 (114)
T ss_dssp E-ECEEEEEC
T ss_pred E-EEEEEEEc
Confidence 8 78877654
No 445
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.42 E-value=3.1e-05 Score=86.78 Aligned_cols=316 Identities=8% Similarity=0.073 Sum_probs=166.2
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCccccc-CCC-CCCCCcccceEEEcCCCCcEEEEec-CCe
Q 005315 255 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV-GGT-GGVAGVSWPVFRWGGGKDKYFAKLG-KNM 331 (702)
Q Consensus 255 g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~-~~~-~~~~~~~w~~~~~s~~dg~~la~~~-d~~ 331 (702)
+..|++++.+ +.|..+|..+|+.+-.+..+...... ... ..+.. .+.. ++..|+.++ ++.
T Consensus 70 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~---~~g~v~v~~~dg~ 132 (689)
T 1yiq_A 70 DGVMYTTGPF----------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNR----GVAV---WKGKVYVGVLDGR 132 (689)
T ss_dssp TTEEEEECGG----------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC----CCEE---ETTEEEEECTTSE
T ss_pred CCEEEEEcCC----------CeEEEEECCCCceeEEEcCCCCccccccccccCCCC----ccEE---ECCEEEEEccCCE
Confidence 5566666766 78999999999998887654321100 000 00000 1122 333455555 999
Q ss_pred EEEEecCCcccccceeec--cCCeeEEEeCC---CCCeEEEEeecCCCCC----CCcEEEEEecCCcceeeeeeecc---
Q 005315 332 ISVYETESFTLIDKKSLK--VENVMDFSWSP---TDPIISLFVPELGGGN----QPARVSLVQIPSKEELRQKNLFS--- 399 (702)
Q Consensus 332 i~v~d~~~~~~~~~~~~~--~~~v~~~~~sp---~~~~la~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~--- 399 (702)
|..+|..+++.+...... ......+..+| ++ .+++ ++.. ....|+.++..+.+.+-......
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~v-----g~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p 206 (689)
T 1yiq_A 133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVI-----GNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDP 206 (689)
T ss_dssp EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEE-----CCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEE-----EeCCCccCCCCEEEEEECCCCcEEEEecccCCCc
Confidence 999999999988765432 11111222233 33 3333 2211 24567777776665432221100
Q ss_pred ----------------------------cccceeEEccCCCEEEEEEccccc---------ccccccccEEEEEEecCC-
Q 005315 400 ----------------------------VSDCKMYWQSSGDYLAVKVDRYTK---------TKKSTYTGFELFRIKERD- 441 (702)
Q Consensus 400 ----------------------------~~~~~~~~s~~g~~l~~~~~~~~~---------~~~~~~~~~~l~~l~~~~- 441 (702)
..-..+.+++++..+++++.+... .....|.. .++-++...
T Consensus 207 ~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~-~v~AlD~~TG 285 (689)
T 1yiq_A 207 KLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS-SIVAVNADTG 285 (689)
T ss_dssp TSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT-EEEEEETTTC
T ss_pred ccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee-eEEEEEccCC
Confidence 000134567788888887765420 00011111 233333322
Q ss_pred cceeEEEecCCC-------CceeEEEEeeCCc---EEEEEEcCCCCCeEEEEEeecccCcCc-------eEE--------
Q 005315 442 IPIEVLELDNKN-------DKIIAFAWEPKGH---RFAVIHGDSPRPDISFYSMRTAQHAGR-------VSK-------- 496 (702)
Q Consensus 442 ~~~~~~~l~~h~-------~~v~~~~~sp~g~---~l~~~~~d~~~~~v~i~d~~~~~~~~~-------~~~-------- 496 (702)
...-......|. ..+.......+|+ .++.++.++ .++++|..+++.... +..
T Consensus 286 ~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~ 362 (689)
T 1yiq_A 286 EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNG---FFYVIDRATGELLSAKGIVPQSWTKGMDMKTGR 362 (689)
T ss_dssp CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS---EEEEEETTTCCEEEEEESSCCSSEEEEETTTTE
T ss_pred ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCC---eEEEEECCCCCEeccccccccccccccCccCCC
Confidence 222222222221 1122222233565 566766777 899999877652100 000
Q ss_pred -EE---------------EcC----CCceeEEEEccCCCEEEEEecc---------------------------------
Q 005315 497 -LT---------------TLK----GKQANALFWSPSGRFIVLAGLK--------------------------------- 523 (702)
Q Consensus 497 -~~---------------~~~----~~~v~~~~~spdg~~l~~~~~~--------------------------------- 523 (702)
+. ..+ ++.-..++++|+...+++....
T Consensus 363 pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 442 (689)
T 1yiq_A 363 PILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEG 442 (689)
T ss_dssp EEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSS
T ss_pred cccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcc
Confidence 00 000 0111237899998888775321
Q ss_pred ---------CCCceEEEEECCCcceeeecc-cCceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeeeccc--
Q 005315 524 ---------GFNGQLEFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD-- 590 (702)
Q Consensus 524 ---------~~dg~v~i~d~~~~~~~~~~~-~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~~~~-- 590 (702)
..+|.|..||+.+++.+-+.. ........++..|..|++++. |+.++.||.. |+.+.+....
T Consensus 443 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~-----dg~l~a~D~~tG~~lw~~~~~~~ 517 (689)
T 1yiq_A 443 AEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSA-----DGRVIAYAADTGEKLWEQPAASG 517 (689)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-----TSEEEEEETTTCCEEEEEECSSC
T ss_pred cccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECC-----CCcEEEEECCCCccceeeeCCCC
Confidence 014889999999999876533 334455577778888888887 9999999976 7776554321
Q ss_pred -cEeeEEEeeCCC
Q 005315 591 -HFFQFLWRPRPP 602 (702)
Q Consensus 591 -~i~~~~w~p~~~ 602 (702)
.-.-+.|.++|+
T Consensus 518 ~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 518 VMAAPVTYSVDGE 530 (689)
T ss_dssp CCSCCEEEEETTE
T ss_pred cccCceEEEECCE
Confidence 112345566665
No 446
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.42 E-value=2.7e-07 Score=86.13 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=60.0
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccc-c-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIK-E-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~-~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
+++|+|.||| .++++++.++|+.+| + ..+.+..+ .+|||||+|.+.++|..|+..|||..+++.+.++|..
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 6899999999 999999999999998 6 46777433 2799999999999999999999999998333666553
No 447
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.39 E-value=3.3e-05 Score=78.01 Aligned_cols=296 Identities=9% Similarity=-0.045 Sum_probs=159.8
Q ss_pred cceEEECCCCcEEEEEeCCceEEeecCcCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005315 206 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~--~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~ 283 (702)
..++....+|...+.....++..|+ . +++.+..+..+ .+.++...++|...+ +.. + |..+|.
T Consensus 22 ~~~~~~d~~g~l~v~t~~~~l~~~d-~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v--~t~----------~-l~~~d~- 85 (330)
T 3hxj_A 22 DSSPILAKNGTIYLGSSNKNLYAIN-T-DGSVKWFFKSGEIIECRPSIGKDGTIYF--GSD----------K-VYAINP- 85 (330)
T ss_dssp CCCCEECTTSCEECSSTTTTTEEEC-T-TSCEEESSCGGGEEEECCEETTTTEECC--SSC----------E-EEEECC-
T ss_pred ccCceEccCCeEEEEcCCCEEEEEC-C-CCcEEEEEecCCCcccceEEecCCcEEE--ecC----------c-EEEECC-
Confidence 3456676777655444345588999 6 56655554433 256777777776443 334 5 888885
Q ss_pred CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCC
Q 005315 284 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDP 363 (702)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~ 363 (702)
+|+.+..+..+..... ..... ++.+.+...++.|..++.. ++...........+.++...+++.
T Consensus 86 ~g~~~~~~~~~~~~~~-------------~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~ 149 (330)
T 3hxj_A 86 DGTEKWRFDTKKAIVS-------------DFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT 149 (330)
T ss_dssp CGGGGGGSCC-----C-------------CEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC
T ss_pred CCcEEEEEECCCCccc-------------CceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE
Confidence 7776555543322110 12222 3444444448899999988 665544433333456667777777
Q ss_pred eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005315 364 IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 443 (702)
Q Consensus 364 ~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 443 (702)
+++. +. ...++.++.. .+.+............+...++|...+. + +. ++.++..+..
T Consensus 150 l~vg------t~--~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~-----------l~~~d~~g~~ 206 (330)
T 3hxj_A 150 IYVG------SN--DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DK-----------VYAINPDGTE 206 (330)
T ss_dssp EEEE------CT--TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SS-----------EEEECTTSCE
T ss_pred EEEE------cC--CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CE-----------EEEECCCCcE
Confidence 5542 22 2456777766 4433333322222333455566664433 2 21 3333322222
Q ss_pred eeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEc--CCCceeEEEEccCCCEEEEEe
Q 005315 444 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPSGRFIVLAG 521 (702)
Q Consensus 444 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~ 521 (702)
. .........+.++...++|. +.+++.++ .|..++. ++. .+..+ ....+..+...++|. |.+++
T Consensus 207 ~--~~~~~~~~~~~~~~~~~~g~-l~v~t~~~---gl~~~~~-~g~------~~~~~~~~~~~~~~~~~~~~g~-l~v~t 272 (330)
T 3hxj_A 207 K--WNFYAGYWTVTRPAISEDGT-IYVTSLDG---HLYAINP-DGT------EKWRFKTGKRIESSPVIGNTDT-IYFGS 272 (330)
T ss_dssp E--EEECCSSCCCSCCEECTTSC-EEEEETTT---EEEEECT-TSC------EEEEEECSSCCCSCCEECTTSC-EEEEC
T ss_pred E--EEEccCCcceeceEECCCCe-EEEEcCCC---eEEEECC-CCC------EeEEeeCCCCccccceEcCCCe-EEEec
Confidence 1 12222245577788888775 44455555 5777753 221 22222 222345566666775 45555
Q ss_pred ccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 522 LKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 522 ~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
. +|.|..+|. +++.+.. .....+.++..+++|+. ..++. +|.+++....
T Consensus 273 ~---~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~-----~G~~~~~~~~ 323 (330)
T 3hxj_A 273 Y---DGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTR-----NGKFYALFNL 323 (330)
T ss_dssp T---TCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECT-----TSCEEEEEC-
T ss_pred C---CCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcC-----CCeEEEEecc
Confidence 5 778999996 4555443 23455677888888874 44566 6777776543
No 448
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.39 E-value=0.0022 Score=73.40 Aligned_cols=344 Identities=9% Similarity=0.040 Sum_probs=188.1
Q ss_pred CcccceEEECCCCcEEEEEeCCceEEeecCcCcceee-ee--------cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005315 203 YWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLM-RY--------AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 273 (702)
Q Consensus 203 ~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~-~~--------~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~ 273 (702)
...|.++...++|.+.+....+|+.+|+.. +..... .. ....|.++...++|...+.. ..
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~--------- 282 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPK-TKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN--------- 282 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETT-TTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS---------
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCC-CCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC---------
Confidence 456888888889987776667789999987 433221 11 12349999999998866543 33
Q ss_pred ccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccc------ee
Q 005315 274 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDK------KS 347 (702)
Q Consensus 274 ~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~------~~ 347 (702)
| |.+|+..++........+...... ....+ + ++...+ +|.+-+...++.|..|+..+.....- ..
T Consensus 283 -G-l~~~~~~~~~~~~~~~~~~~~~~l----~~~~i-~-~i~~D~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 353 (795)
T 4a2l_A 283 -D-LNIYHEGTDSFASYSSNPVENGSL----SQRSV-R-SIFMDS-QGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNS 353 (795)
T ss_dssp -C-EEEEETTTTEEEEECCCTTSTTSC----SSSCE-E-EEEECT-TSCEEEEESSSCEEEECGGGGSSEEECCCTTSSS
T ss_pred -h-hheEcCCCCeEEEEecCCCCCCCC----CCCcE-E-EEEEeC-CcCEEEEECCCCeEEeCCCcccceEEcCCCCCCC
Confidence 3 789997766543322211110000 00011 1 566777 77766655577888888665432110 01
Q ss_pred eccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee--------eecccccceeEEccCCCEEEEEEc
Q 005315 348 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK--------NLFSVSDCKMYWQSSGDYLAVKVD 419 (702)
Q Consensus 348 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~g~~l~~~~~ 419 (702)
+....|.++...++|.+-+. +.++ -|..++..+.....-. .+.......+...++|..|.+++.
T Consensus 354 l~~~~V~~i~~d~~g~lWiG------t~~~--Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~ 425 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKNLWIG------TNDG--GLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH 425 (795)
T ss_dssp CSCSSEEEEEECTTSCEEEE------ESSS--CEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET
T ss_pred CCCCeeEEEEECCCCCEEEE------ECCC--CeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC
Confidence 12334888888888775542 2222 2455554433211110 111122334445567764555554
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEec---CCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEE
Q 005315 420 RYTKTKKSTYTGFELFRIKERDIPIEVLELD---NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSK 496 (702)
Q Consensus 420 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~---~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~ 496 (702)
.+. |+.++............ .+...|.++...++|...+. +.. .|.+|+..++. +..
T Consensus 426 ~~G-----------l~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~----Gl~~~~~~~~~----~~~ 485 (795)
T 4a2l_A 426 AGG-----------LSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS----ALVRFNPEQRS----FTT 485 (795)
T ss_dssp TTE-----------EEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS----CEEEEETTTTE----EEE
T ss_pred cCc-----------eeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC----ceeEEeCCCCe----EEE
Confidence 322 33333222222111110 12457888888888875544 443 47888875432 112
Q ss_pred EE------EcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-------cccCceeeeEECCCCCEEEEE
Q 005315 497 LT------TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-------AEHFMATDVEWDPTGRYVATA 563 (702)
Q Consensus 497 ~~------~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-------~~~~~i~~~~~spdg~~l~t~ 563 (702)
+. .+....+.++...++|+..+... +.|..|+..+.+.... .....|.++..+++|+..+ +
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-----~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-g 559 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-----EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWV-G 559 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-----SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEE-E
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeC-----CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEE-E
Confidence 21 11234688899999998665432 3588888776544111 2234688899999998544 3
Q ss_pred EeecccccccEEEEEeccceeeee------ccccEeeEEEeeCCCCCCC
Q 005315 564 VTSVHEMENGFNIWSFNGKLLYRT------LKDHFFQFLWRPRPPSFLT 606 (702)
Q Consensus 564 s~~~~~~d~~v~iw~~~g~~l~~~------~~~~i~~~~w~p~~~~l~s 606 (702)
+. +++..|+..+..+... ....+.++...++|...++
T Consensus 560 T~------~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~ 602 (795)
T 4a2l_A 560 TR------EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLS 602 (795)
T ss_dssp ES------SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEE
T ss_pred eC------CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEE
Confidence 44 4788888765443322 1245777777777765544
No 449
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.38 E-value=4.3e-07 Score=86.75 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=59.9
Q ss_pred CcEEEECCCC-CCChhhHHHhHhccc-c-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 59 GNIIVVDNLP-VVPKEKFEKLEGVIK-E-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~l~~~~~-~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
++.|||.||| .++++++.++|+.+| + ..+.+.. +.+|||||+|.+.++|.+|++.|||..+++...++|..
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-----KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS-----SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE-----CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 6899999999 999999999999998 6 4666632 23799999999999999999999999998333777654
No 450
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=6.2e-07 Score=72.14 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=48.9
Q ss_pred CCCChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEe
Q 005315 68 PVVPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 134 (702)
Q Consensus 68 p~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~ 134 (702)
+.+++++|+++|+.+|+ ..+.|+ ++++|||||+|.+.++|..|++.+++. .++ .++|..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~--~g~-~l~V~~ 86 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGL--VDN-PLKISW 86 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBC--SSS-BCEEEC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCC--CCC-eEEEEE
Confidence 46899999999999998 578887 589999999999999999999997664 333 566653
No 451
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.32 E-value=7.5e-05 Score=84.73 Aligned_cols=197 Identities=11% Similarity=0.156 Sum_probs=109.6
Q ss_pred eeEEEeC-CCCCeEEEEeecCCCCCCCcEEEEEecCCc-ceeeeeeecccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 353 VMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSK-EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 353 v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
+..++|| |||++||+..... ++....|+++++.++ +.+.. .+.. ....+.|+|||+.|++...+.. ..
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~--G~~~~~l~v~dl~~g~~~l~~-~~~~-~~~~~~WspDg~~l~y~~~d~~------~~ 245 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMS--GNEVYTIEFKRISDPSQTIAD-KVSG-TNGEIVWGPDHTSLFYVTKDET------LR 245 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESS--SSSCEEEEEEETTCTTCCCCC-CEEE-ECSCCEECSSTTEEEEEEECTT------CC
T ss_pred EeeeEecCCCCCEEEEEEeCC--CCceEEEEEEECCCCCEeCCc-cccC-ceeeEEEecCCCEEEEEEECCC------CC
Confidence 5678999 9999999865433 344467999998877 53321 1111 1345789999999888765431 01
Q ss_pred cEEEEEEecCCccee-EEEec-CCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC---CCce
Q 005315 431 GFELFRIKERDIPIE-VLELD-NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---GKQA 505 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~-~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~~v 505 (702)
...||.....+.... .+.+. .......++.|||||++|++.+..+....|.++++.++... . .+..+. ....
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~--~-~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH--N-TLEIVRPREKGVR 322 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC--C-CEEESSCCCTTCC
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC--c-eeEEeecCCCCce
Confidence 124555554332211 12111 22344667899999999998886554557888888654221 1 012222 1233
Q ss_pred eEEEEccCCCEEEEEeccC--CCceEEEEECCCc-c--e-eee-cccCceeeeEECCCCCEEEEEEe
Q 005315 506 NALFWSPSGRFIVLAGLKG--FNGQLEFYNVDEL-E--T-MAT-AEHFMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 506 ~~~~~spdg~~l~~~~~~~--~dg~v~i~d~~~~-~--~-~~~-~~~~~i~~~~~spdg~~l~t~s~ 565 (702)
.++.|+. |+.|++.+..+ ....|..+++.+. . . +.. .....+..+.+. +.+|+....
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~ 386 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR 386 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE
Confidence 4444433 66655554321 2457888888742 2 2 221 112234455554 566655554
No 452
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.30 E-value=0.001 Score=66.24 Aligned_cols=223 Identities=8% Similarity=-0.030 Sum_probs=121.7
Q ss_pred eEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcce
Q 005315 313 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 391 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 391 (702)
.++|++ +++++++.. ++.|..|+.... ..... ........++++|+|++++. .......+|+.++.++.+.
T Consensus 36 gia~~~-~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~va-----d~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 36 NLASAP-DGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVAT-----GWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp EEEECT-TSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEE-----EECTTSCEEEEEECTTSCE
T ss_pred eEEECC-CCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEE-----eccCCcceEEEEcCCCCeE
Confidence 689999 998777665 889999987643 22111 11234788999999986554 1122334677777655543
Q ss_pred eeeeeecccc-cceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE---------ecCCCCceeEEEE
Q 005315 392 LRQKNLFSVS-DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---------LDNKNDKIIAFAW 461 (702)
Q Consensus 392 ~~~~~~~~~~-~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---------l~~h~~~v~~~~~ 461 (702)
.......... ...+...+++ .+++..... -.+|.++.......... ....-...+.+
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~----------g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDT-QYLTADSYR----------GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSS-EEEEEETTT----------TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred EEEEeCCCccccCcccccCCC-cEEEEECCC----------CeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 2111111100 0011112333 333322111 14555553321111110 00111233445
Q ss_pred eeCCcEEEEEEcCCCCCeEEEEEeec-ccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcce-
Q 005315 462 EPKGHRFAVIHGDSPRPDISFYSMRT-AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET- 539 (702)
Q Consensus 462 sp~g~~l~~~~~d~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~- 539 (702)
+|++++|+++.... +.|..|++.. +.. .....+..+ .....++++++|+++++... .+.|.+++.. ++.
T Consensus 175 s~dg~~lyv~d~~~--~~I~~~~~~~~g~~-~~~~~~~~~--~~P~gi~vd~dG~l~va~~~---~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 175 KRFGNFLYVSNTEK--MLLLRIPVDSTDKP-GEPEIFVEQ--TNIDDFAFDVEGNLYGATHI---YNSVVRIAPD-RSTT 245 (306)
T ss_dssp EEETTEEEEEETTT--TEEEEEEBCTTSCB-CCCEEEEES--CCCSSEEEBTTCCEEEECBT---TCCEEEECTT-CCEE
T ss_pred CcCCCEEEEEeCCC--CEEEEEEeCCCCCC-CccEEEecc--CCCCCeEECCCCCEEEEeCC---CCeEEEECCC-CCEE
Confidence 89998887776543 2899999864 211 111222222 24577999999987655544 6789999986 544
Q ss_pred -eeec--ccCceeeeEEC---CCCCEEEEEEe
Q 005315 540 -MATA--EHFMATDVEWD---PTGRYVATAVT 565 (702)
Q Consensus 540 -~~~~--~~~~i~~~~~s---pdg~~l~t~s~ 565 (702)
+... .....++++|. |+++.|+.++.
T Consensus 246 ~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 246 IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 2222 22567899999 89888877766
No 453
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.28 E-value=0.00016 Score=68.16 Aligned_cols=180 Identities=12% Similarity=0.138 Sum_probs=117.9
Q ss_pred cceEEECCCCcEEEEEeCC---ceEEeecCcCcceeeeecCCC-eeEEEecCCCCEEEEEc-CCCCCCCcCCCccEEEEE
Q 005315 206 ESFVQWSPLGTYLATVHRQ---GAAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYS-SHEPSNPRDANRVVINIF 280 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~~~---~i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg~~l~t~s-~d~~~~~~~~~~~~i~vw 280 (702)
...+.|++ ++++.+.+.. .|.++|.. +++.+.+...+. .......+.+..|.... .+ +.+.+|
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~-tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~----------~~v~v~ 90 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLE-TGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN----------HEGFVY 90 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETT-TCCEEEEEECCTTCCEEEEEEETTEEEEEESSS----------SEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECC-CCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC----------CEEEEE
Confidence 44788986 6666666654 38899999 888888876543 43333334455555444 33 789999
Q ss_pred EccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeecc-----CCee
Q 005315 281 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVM 354 (702)
Q Consensus 281 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~-----~~v~ 354 (702)
|..+.+.+.++...... | .++ + +++.|..+. ++.|.++|..+++.+....... ..++
T Consensus 91 D~~tl~~~~ti~~~~~G-------------w-glt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEG-------------W-ALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp ETTTTEEEEEEECSSCC-------------C-EEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred ECCcCcEEEEEeCCCCc-------------e-EEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 99999999999865432 3 343 4 666555444 8999999999988776554432 2456
Q ss_pred EEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc-------------ccceeEEccCCCEEEEEEccc
Q 005315 355 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-------------SDCKMYWQSSGDYLAVKVDRY 421 (702)
Q Consensus 355 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~s~~g~~l~~~~~~~ 421 (702)
.+.|. +|...+- .-..-.|..+|..+++.+....+... ....++|+|+++.|++....-
T Consensus 154 eLe~~-~G~lyan-------vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w 225 (243)
T 3mbr_X 154 ELEWV-NGELLAN-------VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW 225 (243)
T ss_dssp EEEEE-TTEEEEE-------ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred eeEEe-CCEEEEE-------ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence 67766 5554432 12234788888888876665543311 113478999999988887765
Q ss_pred c
Q 005315 422 T 422 (702)
Q Consensus 422 ~ 422 (702)
.
T Consensus 226 p 226 (243)
T 3mbr_X 226 P 226 (243)
T ss_dssp S
T ss_pred C
Confidence 5
No 454
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.28 E-value=6.2e-05 Score=71.55 Aligned_cols=178 Identities=8% Similarity=0.070 Sum_probs=116.1
Q ss_pred ceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCCC-eeEEEecCCCCEEEEEc-CCCCCCCcCCCccEEEEEEcc
Q 005315 207 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYS-SHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~fSpdg~~l~t~s-~d~~~~~~~~~~~~i~vwd~~ 283 (702)
..+.|+ ++.+..+.+.++ |.++|.. +++.+.+. .+. .......++++.|.... .+ +.+.+||..
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~iD~~-Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~----------~~v~V~D~~ 124 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQLSLE-SAQPVWME-RLGNIFAEGLASDGERLYQLTWTE----------GLLFTWSGM 124 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEECCSS-CSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS----------CEEEEEETT
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEEECC-CCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC----------CEEEEEECC
Confidence 467887 356666666666 8899999 88877766 433 33322333444444433 33 689999999
Q ss_pred CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCcccccceeecc-----CCeeEEE
Q 005315 284 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVMDFS 357 (702)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~ 357 (702)
+++.+.++...... | .++ + |++.|+.+. ++.|.++|..+++.+....... ..++.+.
T Consensus 125 Tl~~~~ti~~~~eG-------------w-GLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 125 PPQRERTTRYSGEG-------------W-GLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp TTEEEEEEECSSCC-------------C-CEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred cCcEEEEEeCCCce-------------e-EEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 99999999864322 3 233 4 777666666 8999999999988776554422 2356778
Q ss_pred eCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeeccc-------------ccceeEEccCCCEEEEEEcccc
Q 005315 358 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-------------SDCKMYWQSSGDYLAVKVDRYT 422 (702)
Q Consensus 358 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~s~~g~~l~~~~~~~~ 422 (702)
|. +|...+. .-..-.|..+|..+++.+....+... .-..++|+|+++.|++......
T Consensus 188 ~~-dG~lyan-------vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 188 CA-NGVIYAN-------IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp EE-TTEEEEE-------ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred Ee-CCEEEEE-------ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence 77 6654332 22334788899888887665554311 1134789999888888766544
No 455
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.17 E-value=1.5e-06 Score=89.70 Aligned_cols=202 Identities=11% Similarity=0.068 Sum_probs=98.3
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeE
Q 005315 254 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMI 332 (702)
Q Consensus 254 dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i 332 (702)
++..|++++.+ +.|..||..+|+.+..+.. . .+. +..+.. ++..++.++ ++.|
T Consensus 8 ~~~~v~~gs~d----------g~v~a~d~~tG~~~W~~~~-~-~~~-------------s~p~~~-~g~~~v~~s~dg~l 61 (369)
T 2hz6_A 8 PETLLFVSTLD----------GSLHAVSKRTGSIKWTLKE-D-PVL-------------QVPTHV-EEPAFLPDPNDGSL 61 (369)
T ss_dssp CTTEEEEEETT----------SEEEEEETTTCCEEEEEEC-C-CSC-------------CCC------CCEEECTTTCCE
T ss_pred eCCEEEEEcCC----------CEEEEEECCCCCEEEEecC-C-Cce-------------ecceEc-CCCEEEEeCCCCEE
Confidence 57788999998 8999999999999888776 2 220 123345 776777655 9999
Q ss_pred EEEecCCcccccceeeccCCee--EEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccC
Q 005315 333 SVYETESFTLIDKKSLKVENVM--DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 410 (702)
Q Consensus 333 ~v~d~~~~~~~~~~~~~~~~v~--~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 410 (702)
..||..+++.+.....+.+... ....+ .+..|++ ++ ....++.++..+++
T Consensus 62 ~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~-----g~--~dg~v~a~D~~tG~-------------------- 113 (369)
T 2hz6_A 62 YTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYM-----GK--KQDIWYVIDLLTGE-------------------- 113 (369)
T ss_dssp EEC-----CCSEECSCCHHHHHTTCSCC------CCC-----CE--EEEEEEEECCC-----------------------
T ss_pred EEEECCCCceeeeeeccCccccccCceEe-cCCEEEE-----Ee--CCCEEEEEECCCCc--------------------
Confidence 9999988877654433221110 00111 1222322 11 12233333322221
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccC
Q 005315 411 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 490 (702)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 490 (702)
.+|.+... . ...++|++..+++++.++ .|..||.+++..
T Consensus 114 ----------------------~~w~~~~~------------~----~~~~~p~~~~v~~~~~dg---~v~a~d~~tG~~ 152 (369)
T 2hz6_A 114 ----------------------KQQTLSSA------------F----ADSLSPSTSLLYLGRTEY---TITMYDTKTREL 152 (369)
T ss_dssp ---------------------------------------------------------EEEEEEEE---EEECCCSSSSSC
T ss_pred ----------------------EEEEecCC------------C----cccccccCCEEEEEecCC---EEEEEECCCCCE
Confidence 12221110 0 123456777888888777 899999877653
Q ss_pred cCceEEEEEcCCCceeEEEEccCC---CEEEEEeccCCCceEEEEECCCcceeeecc-cCce-eeeEECCCCCE
Q 005315 491 AGRVSKLTTLKGKQANALFWSPSG---RFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMA-TDVEWDPTGRY 559 (702)
Q Consensus 491 ~~~~~~~~~~~~~~v~~~~~spdg---~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~-~~~i-~~~~~spdg~~ 559 (702)
...... . ....+++++++ ..+++++. +|.|..||..+++.+.+.. ..++ ....++++|..
T Consensus 153 ~W~~~~-~-----~~~~~~~~~~~~~~~~v~~~~~---dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 153 RWNATY-F-----DYAASLPEDDVDYKMSHFVSNG---DGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp CCEEEE-E-----EECCBCCCCCTTCCCCEEEEET---SCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred EEeEec-c-----cccCccccCCccccceEEEECC---CCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 211111 1 11223334432 45666666 8999999999988876533 2333 34566777753
No 456
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.15 E-value=0.0011 Score=66.14 Aligned_cols=228 Identities=9% Similarity=0.059 Sum_probs=120.8
Q ss_pred cceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005315 206 ESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~ 283 (702)
...++|+|+|+++++-..++ |..|+..+. ....+..+ .+..++++|+|+.+++.... ....|..++..
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~~~~~~p~gia~~~dG~l~vad~~~--------~~~~v~~~d~~ 103 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNA--------DSIPVVSLVKS 103 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECT--------TSCEEEEEECT
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEEeCCCCceeEEEcCCCcEEEEeccC--------CcceEEEEcCC
Confidence 34789999999666654555 888888732 22223222 48899999999966655332 00346677777
Q ss_pred CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-CCeEEEEecCCc--ccc--cc------eeeccCC
Q 005315 284 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF--TLI--DK------KSLKVEN 352 (702)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d~~i~v~d~~~~--~~~--~~------~~~~~~~ 352 (702)
+|+............ .. .+...+ ++..+++-. ++.|.+++..++ ++. .. .......
T Consensus 104 ~g~~~~~~~~~~~~~-------~~-----g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 104 DGTVETLLTLPDAIF-------LN-----GITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp TSCEEEEEECTTCSC-------EE-----EEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred CCeEEEEEeCCCccc-------cC-----cccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 777543322211110 01 233345 565555554 788888887643 211 00 0011123
Q ss_pred eeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeee-ec-ccccceeEEccCCCEEEEEEcccccccccccc
Q 005315 353 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN-LF-SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 430 (702)
Q Consensus 353 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 430 (702)
...+ +|+++.|.+. .....+|+.++......+.... +. ......++++++|...++....+
T Consensus 171 pngi--s~dg~~lyv~------d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~--------- 233 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVS------NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYN--------- 233 (306)
T ss_dssp EEEE--EEETTEEEEE------ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTC---------
T ss_pred CCCc--CcCCCEEEEE------eCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCC---------
Confidence 4455 7888766652 2334578888765311111111 11 12334567789997544432222
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceeEEEEe---eCCcEEEEEEcCC
Q 005315 431 GFELFRIKERDIPIEVLELDNKNDKIIAFAWE---PKGHRFAVIHGDS 475 (702)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s---p~g~~l~~~~~d~ 475 (702)
.+..++..+.......+.......++++|. |+++.|+++...+
T Consensus 234 --~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 234 --SVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp --CEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred --eEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 233344333221111222223568899998 8888887776643
No 457
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=6.3e-06 Score=67.95 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=57.8
Q ss_pred CCcEEEECCCC-C-CChhhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCC-HHHHHHHHHHhC--CCccCCeeEEE
Q 005315 58 FGNIIVVDNLP-V-VPKEKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNT-PQEAELAKEKTN--GYKLDRAHIFA 131 (702)
Q Consensus 58 ~~~~~~v~~lp-~-~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~-~~~a~~a~~~~~--~~~~~~~h~~~ 131 (702)
-+++|+|+||| . ++.++++.+|+.+++ ..|.+..|+. .|||+|.+ +.+|..|++.+| +..+.+. .++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~-~~~ 89 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK-EVT 89 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS-SEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc-EEE
Confidence 47899999999 8 999999999999988 4777887764 39999999 899999999995 5556553 555
Q ss_pred EEec
Q 005315 132 VNMF 135 (702)
Q Consensus 132 v~~~ 135 (702)
+..+
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5444
No 458
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.07 E-value=0.0014 Score=67.39 Aligned_cols=282 Identities=11% Similarity=0.039 Sum_probs=136.0
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEE
Q 005315 254 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMIS 333 (702)
Q Consensus 254 dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~ 333 (702)
.+..|++++.+ +.|..+|..+|+.+..+......... ......+ ...+.. . ++..++...++.|.
T Consensus 52 ~~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~--~~~~~~~-~~~~~~-~-~~~v~v~~~~g~l~ 116 (376)
T 3q7m_A 52 ADNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWF--SKEPALL-SGGVTV-S-GGHVYIGSEKAQVY 116 (376)
T ss_dssp ETTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CC--SCCCCCE-EEEEEE-E-TTEEEEEETTSEEE
T ss_pred ECCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccc--cccCccc-ccCceE-e-CCEEEEEcCCCEEE
Confidence 35667777777 78999999999988766543211000 0000000 001111 2 34444444489999
Q ss_pred EEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccc-----cceeEEc
Q 005315 334 VYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS-----DCKMYWQ 408 (702)
Q Consensus 334 v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~s 408 (702)
.+|..+++.+................ ++ .+.+ ++. ...++.++..+.+.+-........ ......
T Consensus 117 a~d~~tG~~~W~~~~~~~~~~~p~~~-~~-~v~v-----~~~--~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~- 186 (376)
T 3q7m_A 117 ALNTSDGTVAWQTKVAGEALSRPVVS-DG-LVLI-----HTS--NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT- 186 (376)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEE-TT-EEEE-----ECT--TSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-
T ss_pred EEECCCCCEEEEEeCCCceEcCCEEE-CC-EEEE-----EcC--CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-
Confidence 99999998776554332211111111 23 3443 222 336677776666544332221100 011111
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee--CCcEEEEEEcCCCCCeEEEEEee
Q 005315 409 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP--KGHRFAVIHGDSPRPDISFYSMR 486 (702)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp--~g~~l~~~~~d~~~~~v~i~d~~ 486 (702)
.+..++++..++........++-.+|.......... ..+ ..+..+.-+| .+..+++++.++ .+..+|..
T Consensus 187 -~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~-~~~----~~~~~~~~~p~~~~~~v~~~~~~g---~l~~~d~~ 257 (376)
T 3q7m_A 187 -AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS-TEI----DRLSDVDTTPVVVNGVVFALAYNG---NLTALDLR 257 (376)
T ss_dssp -ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----------------CCCCCCEEETTEEEEECTTS---CEEEEETT
T ss_pred -ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC-ccc----ccccccCCCcEEECCEEEEEecCc---EEEEEECC
Confidence 123444443332211001111123343332110000 000 0000000111 345666666666 78888886
Q ss_pred cccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecc---cCceeeeEECCCCCEEEEE
Q 005315 487 TAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---HFMATDVEWDPTGRYVATA 563 (702)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~---~~~i~~~~~spdg~~l~t~ 563 (702)
++. .+..........+.. ++..+++++. ++.|..+|..+++.+.... ...+..+.. .+..|+++
T Consensus 258 tG~------~~w~~~~~~~~~~~~--~~~~l~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~ 324 (376)
T 3q7m_A 258 SGQ------IMWKRELGSVNDFIV--DGNRIYLVDQ---NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVG 324 (376)
T ss_dssp TCC------EEEEECCCCEEEEEE--ETTEEEEEET---TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEE
T ss_pred CCc------EEeeccCCCCCCceE--ECCEEEEEcC---CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEE
Confidence 654 333333333333333 4667777776 8899999999988876533 222333333 35677777
Q ss_pred EeecccccccEEEEEec-cceeeee
Q 005315 564 VTSVHEMENGFNIWSFN-GKLLYRT 587 (702)
Q Consensus 564 s~~~~~~d~~v~iw~~~-g~~l~~~ 587 (702)
+. ++.+..+|.. |+.+...
T Consensus 325 ~~-----~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 325 DS-----EGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp CT-----TSEEEEEETTTCCEEEEE
T ss_pred eC-----CCeEEEEECCCCcEEEEE
Confidence 77 7889999965 5554433
No 459
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.07 E-value=0.0011 Score=73.82 Aligned_cols=168 Identities=10% Similarity=0.062 Sum_probs=93.6
Q ss_pred CcEEEEEeCCc-eEEeecCcCcceeeeecCCC---eeEEEecC---CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcE
Q 005315 215 GTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ---VKLIDFSP---GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV 287 (702)
Q Consensus 215 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~---v~~i~fSp---dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~ 287 (702)
+..|++++.++ +..+|.. +++.+-++.... ...+.-+| ++ .++++.... .....+.|..+|..+|+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~-tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~----~~~~~g~v~a~D~~tG~~ 190 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAK-TGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGA----EYGVRGFVSAYDADTGKL 190 (668)
T ss_dssp BTEEEEECTTSEEEEEETT-TCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCT----TTCCBCEEEEEETTTCCE
T ss_pred CCEEEEEcCCCEEEEEECC-CCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCC----CcCCCCEEEEEECCCCcE
Confidence 55677777676 7889988 777766654311 11122222 44 444443210 001227899999999999
Q ss_pred EeeccCCCcccccC-----------CCCC-------CCCcccceEEEcCCCCcEEEEec-CC------------------
Q 005315 288 MRDFKGSADEFAVG-----------GTGG-------VAGVSWPVFRWGGGKDKYFAKLG-KN------------------ 330 (702)
Q Consensus 288 ~~~~~~~~~~~~~~-----------~~~~-------~~~~~w~~~~~s~~dg~~la~~~-d~------------------ 330 (702)
+-.+.......... .-.+ -.+..|..+++.+ ++..++.+. ++
T Consensus 191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~ 269 (668)
T 1kv9_A 191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYL 269 (668)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence 88775321100000 0000 1123466678888 777776665 44
Q ss_pred -eEEEEecCCcccccceeeccC---------CeeEEEeCCCCC---eEEEEeecCCCCCCCcEEEEEecCCcceeeeee
Q 005315 331 -MISVYETESFTLIDKKSLKVE---------NVMDFSWSPTDP---IISLFVPELGGGNQPARVSLVQIPSKEELRQKN 396 (702)
Q Consensus 331 -~i~v~d~~~~~~~~~~~~~~~---------~v~~~~~sp~~~---~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 396 (702)
.|..+|..+++.+........ ......+..+|+ .+++ .+....++.++..+.+.+....
T Consensus 270 ~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~-------~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQ-------APKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEE-------CCTTSEEEEEETTTCCEEEEEE
T ss_pred eeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEE-------ECCCCEEEEEECCCCCEecccc
Confidence 488999999988776544211 111122223554 3444 4556678888888887665443
No 460
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.05 E-value=0.012 Score=67.03 Aligned_cols=342 Identities=9% Similarity=0.063 Sum_probs=174.7
Q ss_pred cccceEEECCCCcEEEEEeCCceEEeecCcCcceeee---------ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005315 204 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMR---------YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 274 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~---------~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~ 274 (702)
..|.++...++|.+.+.....|+..|+.. +.....- +....|.++...++|...+.. ..
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt-~~---------- 230 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLN-DKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT-SK---------- 230 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETT-TTEEEEECC--------CCSSEEEEEECTTCCEEEEE-TT----------
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCC-CCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe-CC----------
Confidence 45778888888887775555589999987 4332111 112348899998888866543 33
Q ss_pred cEEEEEEccCCcEEeeccCCCc-ccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccce-------
Q 005315 275 VVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK------- 346 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~------- 346 (702)
| |.+||..+++... +..... ... -....+ + ++...+ +|.+.+....+.|.+++..+.....-.
T Consensus 231 G-l~~~d~~~~~~~~-~~~~~~~~~~----l~~~~i-~-~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~ 301 (781)
T 3v9f_A 231 G-LALFNANTETFTN-FHNNPGNIHG----ALSSYI-F-SIKQLK-DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFI 301 (781)
T ss_dssp E-EEEEETTTTEEEC----------------CCCCE-E-EEEECT-TSEEEEEESSSCEEEEETTCC---------CEEE
T ss_pred c-HheECCCCCcEEE-EEcCCCcccc----ccCceE-E-EEEECC-CCCEEEEeCCCCeEEECCCCCeeeeeeccccccc
Confidence 3 8899976665432 221110 000 000001 1 456666 776655444467888887765432111
Q ss_pred -------eeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc--eeee-------eeecccccceeEEccC
Q 005315 347 -------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQ-------KNLFSVSDCKMYWQSS 410 (702)
Q Consensus 347 -------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~-------~~~~~~~~~~~~~s~~ 410 (702)
.+....|.++...++|.+-+. +.++ -|..++..... .+.. ..+.......+...++
T Consensus 302 ~~~~~~~~l~~~~v~~i~~D~~g~lWig------t~~~--Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 373 (781)
T 3v9f_A 302 REGDNNYSLSNASARYIFQDSFNNIWIG------TWGG--GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ 373 (781)
T ss_dssp CBCSSTTSBSSSCEEEEEECSSCCEEEE------EBSS--CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT
T ss_pred cCCCCCCCCCCCeEEEEEEeCCCCEEEE------ecCC--eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC
Confidence 122345778877777764432 1122 13444433221 1110 0111112223344455
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEE--ecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 411 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE--LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
|. |.+++..+. +..++. ......... -......|.++...++|...+ ++..+ -|..|+..++
T Consensus 374 g~-lWigt~~~G---------l~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~---Gl~~~~~~~~ 437 (781)
T 3v9f_A 374 GK-LWIGTDGGG---------INVFEN--GKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLG---NISYYNTRLK 437 (781)
T ss_dssp SC-EEEEEBSSC---------EEEEET--TEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTE---EEEEECSSSC
T ss_pred CC-EEEEeCCCc---------EEEEEC--CCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccC---CEEEEcCCCC
Confidence 54 334442221 233321 111110000 011246788888887776554 55444 5777776443
Q ss_pred cCcCceEEEE--EcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cc-----cCceeeeEECCCCCE
Q 005315 489 QHAGRVSKLT--TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE-----HFMATDVEWDPTGRY 559 (702)
Q Consensus 489 ~~~~~~~~~~--~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~-----~~~i~~~~~spdg~~ 559 (702)
. +..+. .+....|.++...++|+..+ ++ .+.|..|+..+++.... .. ...|.++..+++|+.
T Consensus 438 ~----~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt----~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l 508 (781)
T 3v9f_A 438 K----FQIIELEKNELLDVRVFYEDKNKKIWI-GT----HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF 508 (781)
T ss_dssp E----EEECCSTTTCCCCEEEEEECTTSEEEE-EE----TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCE
T ss_pred c----EEEeccCCCCCCeEEEEEECCCCCEEE-EE----CCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCE
Confidence 2 11111 12234688888888886544 44 24588899876544322 11 356888999999985
Q ss_pred EEEEEeecccccccEEEEEeccceeeee------ccccEeeEEEeeCCCCCC
Q 005315 560 VATAVTSVHEMENGFNIWSFNGKLLYRT------LKDHFFQFLWRPRPPSFL 605 (702)
Q Consensus 560 l~t~s~~~~~~d~~v~iw~~~g~~l~~~------~~~~i~~~~w~p~~~~l~ 605 (702)
.+ ++. .+++..|+..+..+... ....+.++...+++...+
T Consensus 509 Wi-gt~-----~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi 554 (781)
T 3v9f_A 509 WI-GTF-----GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWL 554 (781)
T ss_dssp EE-EES-----SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEE
T ss_pred EE-EEc-----CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEE
Confidence 54 343 35777787665443322 124567777767766444
No 461
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.03 E-value=3.3e-06 Score=87.16 Aligned_cols=178 Identities=12% Similarity=-0.018 Sum_probs=86.9
Q ss_pred eEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCCc-eEEeecCcCcceeeeecCC--C-ee-E
Q 005315 174 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--Q-VK-L 248 (702)
Q Consensus 174 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~-v~-~ 248 (702)
.+++...++....|+. .+++..-.+.. ..+.+..+.++|+.+++++.++ +..||.. +++.+.++... . +. +
T Consensus 11 ~v~~gs~dg~v~a~d~-~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~-tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSK-RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK-NNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp EEEEEETTSEEEEEET-TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHTTC
T ss_pred EEEEEcCCCEEEEEEC-CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECC-CCceeeeeeccCccccccC
Confidence 4555666777778887 45665544444 4555666777888888777777 8899997 66655444322 1 11 1
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec
Q 005315 249 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 328 (702)
Q Consensus 249 i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~ 328 (702)
..++ ++..|++++.+ +.|+.||..+|+.+..+..+.. ..++| ++..++.++
T Consensus 87 p~~~-~~~~v~~g~~d----------g~v~a~D~~tG~~~w~~~~~~~-----------------~~~~p-~~~~v~~~~ 137 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQ----------DIWYVIDLLTGEKQQTLSSAFA-----------------DSLSP-STSLLYLGR 137 (369)
T ss_dssp SCC------CCCCEEE----------EEEEEECCC----------------------------------------EEEEE
T ss_pred ceEe-cCCEEEEEeCC----------CEEEEEECCCCcEEEEecCCCc-----------------ccccc-cCCEEEEEe
Confidence 1122 34567777777 8999999999999887765431 24567 777777777
Q ss_pred -CCeEEEEecCCcccccceeeccCCeeEEEeCCCC---CeEEEEeecCCCCCCCcEEEEEecCCcceee
Q 005315 329 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD---PIISLFVPELGGGNQPARVSLVQIPSKEELR 393 (702)
Q Consensus 329 -d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~---~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 393 (702)
++.|..||..+++.+...... ......++++. ..+++ ++. ...++.++..+.+.+-
T Consensus 138 ~dg~v~a~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~v~~-----~~~--dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 138 TEYTITMYDTKTRELRWNATYF--DYAASLPEDDVDYKMSHFV-----SNG--DGLVVTVDSESGDVLW 197 (369)
T ss_dssp EEEEEECCCSSSSSCCCEEEEE--EECCBCCCCCTTCCCCEEE-----EET--SCEEEEECTTTCCEEE
T ss_pred cCCEEEEEECCCCCEEEeEecc--cccCccccCCccccceEEE-----ECC--CCEEEEEECCCCcEEE
Confidence 899999999999887655332 12233333321 33433 222 2456677766665443
No 462
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.016 Score=66.05 Aligned_cols=342 Identities=10% Similarity=0.011 Sum_probs=175.2
Q ss_pred cccceEEECCCCcEEEEEeCCceEEeecCcCcceeee---------ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005315 204 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMR---------YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 274 (702)
Q Consensus 204 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~---------~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~ 274 (702)
..|.++...++|.+.+.... |+.+|+.. +.....- +....|.++...++|...+.....
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~---------- 278 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNAN-TETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELN---------- 278 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETT-TTEEEC-----------CCCCEEEEEECTTSEEEEEESSS----------
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCC-CCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCC----------
Confidence 45888999999987766544 99999976 3332111 123349999998888866544324
Q ss_pred cEEEEEEccCCcEEeecc-------CCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCccccc---
Q 005315 275 VVINIFDVRTGKVMRDFK-------GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLID--- 344 (702)
Q Consensus 275 ~~i~vwd~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~--- 344 (702)
| |.+++..++....... ....... -....+ + ++...+ +|.+-+...++.|..|+..+.....
T Consensus 279 G-l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----l~~~~v-~-~i~~D~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~ 350 (781)
T 3v9f_A 279 G-IMILDLQQNQFLLPEQIRFEFIREGDNNYS----LSNASA-R-YIFQDS-FNNIWIGTWGGGINFISNAPPTFHTWSY 350 (781)
T ss_dssp C-EEEEETTCC---------CEEECBCSSTTS----BSSSCE-E-EEEECS-SCCEEEEEBSSCEEEECSSCCSCEEEC-
T ss_pred C-eEEECCCCCeeeeeeccccccccCCCCCCC----CCCCeE-E-EEEEeC-CCCEEEEecCCeEEEeCCCCCcceeecc
Confidence 3 7888876655322111 0000000 000011 1 456666 6765554447778888876443211
Q ss_pred ------ceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee---eeecccccceeEEccCCCEEE
Q 005315 345 ------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ---KNLFSVSDCKMYWQSSGDYLA 415 (702)
Q Consensus 345 ------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~ 415 (702)
...+....|.++...++|.+.+. +.++ -+..++..+.....- ..+.......+...++|...
T Consensus 351 ~~~~~~~~~l~~~~v~~i~~d~~g~lWig------t~~~--Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW- 421 (781)
T 3v9f_A 351 SPTQMNESSLSNKVVSSVCDDGQGKLWIG------TDGG--GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW- 421 (781)
T ss_dssp ---CCCSSCCSSSCEEEEEECTTSCEEEE------EBSS--CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-
T ss_pred CccccccCCCCCcceEEEEEcCCCCEEEE------eCCC--cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-
Confidence 01122345888888887765542 1122 255555443221110 01111222333444555433
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEe-cCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCce
Q 005315 416 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 494 (702)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 494 (702)
+++..+ .|+.++........... ......|.++...++|... +++. + -|..|+..++..
T Consensus 422 igt~~~-----------Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~---Gl~~~~~~~~~~---- 481 (781)
T 3v9f_A 422 FGTYLG-----------NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-A---GVFVIDLASKKV---- 481 (781)
T ss_dssp EEETTE-----------EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-T---EEEEEESSSSSC----
T ss_pred EEeccC-----------CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-C---ceEEEeCCCCeE----
Confidence 333321 23333332222211111 1124578888888777644 4444 3 588888765432
Q ss_pred EEEEEcC-----CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee-----cccCceeeeEECCCCCEEEEEE
Q 005315 495 SKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVEWDPTGRYVATAV 564 (702)
Q Consensus 495 ~~~~~~~-----~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~-----~~~~~i~~~~~spdg~~l~t~s 564 (702)
....... ...+.++...++|++.+... .+.|..|+..+.+.... .....|.++..+++|+..+. +
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~----~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T 556 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF----GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-T 556 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEEEES----SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-E
T ss_pred EecccCcccccccceeEEEEEcCCCCEEEEEc----CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-E
Confidence 2333222 34688899999998665443 34588888876544322 12346788999999985443 3
Q ss_pred eecccccccE-EEEEeccceeeee------ccccEeeEEEeeCCCCCC
Q 005315 565 TSVHEMENGF-NIWSFNGKLLYRT------LKDHFFQFLWRPRPPSFL 605 (702)
Q Consensus 565 ~~~~~~d~~v-~iw~~~g~~l~~~------~~~~i~~~~w~p~~~~l~ 605 (702)
. +++ ..|+..+..+... ....+.++...++|...+
T Consensus 557 ~------~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~ 598 (781)
T 3v9f_A 557 G------EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWA 598 (781)
T ss_dssp T------TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEE
T ss_pred C------CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEE
Confidence 3 344 6666554332221 113455566666655433
No 463
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.99 E-value=0.0039 Score=59.58 Aligned_cols=200 Identities=12% Similarity=0.170 Sum_probs=117.7
Q ss_pred CCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecc-cccceeEEccCCCEEEEEEccccccccccc
Q 005315 351 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-VSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 429 (702)
Q Consensus 351 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 429 (702)
..+..++|+|++..|.+. .+....|+.++.. .+.++...+.. ...-.+++.++|.++++.-.++.
T Consensus 27 ~~lSGla~~~~~~~L~aV------~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~------- 92 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFST------INKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYA------- 92 (255)
T ss_dssp SCEEEEEEETTTTEEEEE------EETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTE-------
T ss_pred cCcceeEEeCCCCEEEEE------ECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCc-------
Confidence 358899999987766542 4557889999887 66666554422 23334677888875554322222
Q ss_pred ccEEEEEEecCCc--ceeEEEec----CCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEE----
Q 005315 430 TGFELFRIKERDI--PIEVLELD----NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT---- 499 (702)
Q Consensus 430 ~~~~l~~l~~~~~--~~~~~~l~----~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~---- 499 (702)
+.++.+...+. ......+. .++.....++|+|.++.|.++.... ...+|.++..........+..
T Consensus 93 --l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~---p~~i~~~~g~~~~~~l~i~~~~~~~ 167 (255)
T 3qqz_A 93 --IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN---PIEVYKVNGLLSSNELHISKDKALQ 167 (255)
T ss_dssp --EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS---SEEEEEEESTTCSSCCEEEECHHHH
T ss_pred --EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC---CceEEEEcccccCCceeeecchhhc
Confidence 55666655442 12223221 2345578999999998888887766 456666642111111122211
Q ss_pred --cCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cc---------cCceeeeEECCCCCEEEEEEee
Q 005315 500 --LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE---------HFMATDVEWDPTGRYVATAVTS 566 (702)
Q Consensus 500 --~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~---------~~~i~~~~~spdg~~l~t~s~~ 566 (702)
+.......+++.|....+++.+.. ...|..+|... +.+.. .. ....-.++|+++|+ |..++.
T Consensus 168 ~~~~~~d~S~l~~dp~tg~lliLS~~--s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE- 242 (255)
T 3qqz_A 168 RQFTLDDVSGAEFNQQKNTLLVLSHE--SRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSE- 242 (255)
T ss_dssp HTCCSSCCCEEEEETTTTEEEEEETT--TTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEET-
T ss_pred cccccCCceeEEEcCCCCeEEEEECC--CCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcC-
Confidence 112246889999976555444431 67888888774 33332 11 12456899999998 455566
Q ss_pred cccccccEEEEE
Q 005315 567 VHEMENGFNIWS 578 (702)
Q Consensus 567 ~~~~d~~v~iw~ 578 (702)
.|.++.|.
T Consensus 243 ----~n~~y~f~ 250 (255)
T 3qqz_A 243 ----PNRFYRFT 250 (255)
T ss_dssp ----TTEEEEEE
T ss_pred ----CceEEEEE
Confidence 57666554
No 464
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.96 E-value=0.0066 Score=62.59 Aligned_cols=242 Identities=7% Similarity=-0.081 Sum_probs=127.4
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
-.|.+..+ ..+|+.+... .|+.+++..+............. .+.|.+ .+..|.
T Consensus 79 ~~C~~~~~-~~~l~~~~~~-----------~I~~i~~~~~~~~~~~~~~~~~~--------------gl~~d~-~~~~ly 131 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANRI-----------DIRQVLPHRSEYTLLLNNLENAI--------------ALDFHH-RRELVF 131 (386)
T ss_dssp SCEEECSS-CCEEEEECBS-----------CEEEECTTSCCCEEEECSCSCEE--------------EEEEET-TTTEEE
T ss_pred CeECCccc-cceeEeecCc-----------cceeeccCCCcEEEEecCCCccE--------------EEEEec-CCCeEE
Confidence 44555555 3445444433 47788876555433333333333 688987 666555
Q ss_pred Eec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccc
Q 005315 326 KLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 403 (702)
Q Consensus 326 ~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 403 (702)
... .+.|..+++..................+++.+.+..|.+. .....+|+.++.............-....
T Consensus 132 ~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~------d~~~~~I~~~~~dg~~~~~l~~~~l~~P~ 205 (386)
T 3v65_B 132 WSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT------DSGTSRIEVANLDGAHRKVLLWQSLEKPR 205 (386)
T ss_dssp EEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEE------ETTTTEEEECBTTSCSCEEEECSSCSCEE
T ss_pred EEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEE------cCCCCeEEEEeCCCCceEEeecCCCCCCc
Confidence 444 7889999887553221111122345678888766655441 22234666666543321111110111233
Q ss_pred eeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEE
Q 005315 404 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 483 (702)
Q Consensus 404 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 483 (702)
.++..|.+.+|++...... -.|+.+...+.....+ +...-.....++|+|++..|+++.... ..|..+
T Consensus 206 giavdp~~g~ly~td~~~~---------~~I~r~~~dG~~~~~~-~~~~~~~PnGlavd~~~~~lY~aD~~~--~~I~~~ 273 (386)
T 3v65_B 206 AIALHPMEGTIYWTDWGNT---------PRIEASSMDGSGRRII-ADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERA 273 (386)
T ss_dssp EEEEETTTTEEEEEECSSS---------CEEEEEETTSCSCEEE-ECSSCSCEEEEEEEGGGTEEEEEETTT--TEEEEE
T ss_pred EEEEEcCCCeEEEeccCCC---------CEEEEEeCCCCCcEEE-EECCCCCeeeEEEeCCCCEEEEEECCC--CEEEEE
Confidence 4567887777776554321 2566665544332222 212234578899999888888776543 278888
Q ss_pred EeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCccee
Q 005315 484 SMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 540 (702)
Q Consensus 484 d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~ 540 (702)
++.... + ..+..........+++ .. ..|+.+..+ .+.|..++..+++.+
T Consensus 274 d~dG~~---~-~~~~~~~~~~P~giav-~~-~~ly~td~~--~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 274 NLDGSH---R-KAVISQGLPHPFAITV-FE-DSLYWTDWH--TKSINSANKFTGKNQ 322 (386)
T ss_dssp CTTSCS---C-EEEECSSCSSEEEEEE-ET-TEEEEEETT--TTEEEEEETTTCCSC
T ss_pred eCCCCe---e-EEEEECCCCCceEEEE-EC-CEEEEeeCC--CCeEEEEECCCCcce
Confidence 875322 1 1222222234466777 33 345554432 677888885544433
No 465
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.95 E-value=0.015 Score=59.91 Aligned_cols=234 Identities=8% Similarity=-0.070 Sum_probs=122.6
Q ss_pred ceEEECCCCcEEEEEeCCceEEeecCcCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005315 207 SFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 285 (702)
Q Consensus 207 ~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~-~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g 285 (702)
+|.+..+ ..+|+.+....|+..+.. +....... ....+..++|++.+..|...... .+.|..+++..+
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~-~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~---------~~~I~r~~~~g~ 148 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPH-RSEYTLLLNNLENAIALDFHHRRELVFWSDVT---------LDRILRANLNGS 148 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTT-SCCCEEEECSCSCEEEEEEETTTTEEEEEETT---------TTEEEEEETTSC
T ss_pred eECCccc-cceeEeecCccceeeccC-CCcEEEEecCCCccEEEEEecCCCeEEEEeCC---------CCcEEEEecCCC
Confidence 4555566 446677777778888887 33322222 33458899999877666655432 168999997655
Q ss_pred cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe-c-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCC
Q 005315 286 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDP 363 (702)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~-~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~ 363 (702)
.....+...... +. .+++.+ .+..|... . .+.|.+.++..................+++.|.+.
T Consensus 149 ~~~~~~~~~~~~--------p~-----glavd~-~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g 214 (386)
T 3v65_B 149 NVEEVVSTGLES--------PG-----GLAVDW-VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG 214 (386)
T ss_dssp CEEEEECSSCSC--------CC-----CEEEET-TTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred CcEEEEeCCCCC--------cc-----EEEEEe-CCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC
Confidence 433322211111 11 356665 44444333 3 78888888764322111111234578899999877
Q ss_pred eEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005315 364 IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 443 (702)
Q Consensus 364 ~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 443 (702)
.|.+ .......+|+.++.............-.....++|++++..|+++..... .|+.++..+..
T Consensus 215 ~ly~-----td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~----------~I~~~d~dG~~ 279 (386)
T 3v65_B 215 TIYW-----TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH----------VIERANLDGSH 279 (386)
T ss_dssp EEEE-----EECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT----------EEEEECTTSCS
T ss_pred eEEE-----eccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC----------EEEEEeCCCCe
Confidence 6665 21223467888876543211111101112335688988888877654432 44444433322
Q ss_pred eeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEe
Q 005315 444 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 485 (702)
Q Consensus 444 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 485 (702)
...+ +.........+++ ..+ .++.+.... ..|..++.
T Consensus 280 ~~~~-~~~~~~~P~giav-~~~-~ly~td~~~--~~V~~~~~ 316 (386)
T 3v65_B 280 RKAV-ISQGLPHPFAITV-FED-SLYWTDWHT--KSINSANK 316 (386)
T ss_dssp CEEE-ECSSCSSEEEEEE-ETT-EEEEEETTT--TEEEEEET
T ss_pred eEEE-EECCCCCceEEEE-ECC-EEEEeeCCC--CeEEEEEC
Confidence 2222 2122334566666 333 444443322 16666663
No 466
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.93 E-value=0.0048 Score=67.23 Aligned_cols=78 Identities=13% Similarity=0.067 Sum_probs=45.6
Q ss_pred eEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeeccc-Cc--eeeeEEC
Q 005315 479 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FM--ATDVEWD 554 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~-~~--i~~~~~s 554 (702)
.|..||+.+++ .+-++. ...+....+...+..+++++. +|.|+.||..+++++.+... .. ..-+.+.
T Consensus 445 ~l~a~D~~tG~------~~W~~~~~~~~~~~~~~t~gg~v~~g~~---dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~ 515 (571)
T 2ad6_A 445 QIRAFDLTTGK------AKWTKWEKFAAWGGTLYTKGGLVWYATL---DGYLKALDNKDGKELWNFKMPSGGIGSPMTYS 515 (571)
T ss_dssp EEEEECTTTCC------EEEEEEESSCCCSBCEEETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred eEEEEECCCCC------EEEEecCCCCccceeEEECCCEEEEEcC---CCeEEEEECCCCCEEEEEeCCCCcEeeeEEEE
Confidence 67777776554 222222 122223333445667777776 99999999999998865332 11 2234566
Q ss_pred CCCCEEEEEEe
Q 005315 555 PTGRYVATAVT 565 (702)
Q Consensus 555 pdg~~l~t~s~ 565 (702)
.+|+.++....
T Consensus 516 ~~G~~yv~~~~ 526 (571)
T 2ad6_A 516 FKGKQYIGSMY 526 (571)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEC
Confidence 78875544443
No 467
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.92 E-value=0.0012 Score=73.62 Aligned_cols=296 Identities=13% Similarity=0.071 Sum_probs=149.6
Q ss_pred eEEEecC-CCCEEEEEcCCCCCCC-cCCCccEEEEEEccCCcEE--eeccCCCcccccCCCCCCCCcccceEEEcCCCCc
Q 005315 247 KLIDFSP-GEKYLVTYSSHEPSNP-RDANRVVINIFDVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 322 (702)
Q Consensus 247 ~~i~fSp-dg~~l~t~s~d~~~~~-~~~~~~~i~vwd~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~ 322 (702)
.++++.| +|+.++.|+.+..... .......+.+||..+++.. ..+..+.... ....++.. +++
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~------------~~~~~~~~-~g~ 255 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF------------CPGISMDG-NGQ 255 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS------------SCEEEECT-TSC
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc------------cccccCCC-CCC
Confidence 3667777 8888888876522110 0111236889999887632 2222111111 11357778 999
Q ss_pred EEEEec--CCeEEEEecCCcccccceeeccCC-eeEEEeCCCCCeEEEEeecCCC-CCC---CcEEEEEecCCcceeee-
Q 005315 323 YFAKLG--KNMISVYETESFTLIDKKSLKVEN-VMDFSWSPTDPIISLFVPELGG-GNQ---PARVSLVQIPSKEELRQ- 394 (702)
Q Consensus 323 ~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~sp~~~~la~~~~~~~~-~~~---~~~i~~~~~~~~~~~~~- 394 (702)
+++.++ +..+.+||..+.+........... -...+..++|+++++ |+ .++ ...++.|+..+.+-...
T Consensus 256 lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~-----GG~~~~~~~~~~~e~yd~~t~~W~~~~ 330 (656)
T 1k3i_A 256 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI-----GGSWSGGVFEKNGEVYSPSSKTWTSLP 330 (656)
T ss_dssp EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEE-----CCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEE-----eCcccCCcccccceEeCCCCCcceeCC
Confidence 999888 568999998866533222222222 234566678988887 66 232 24577788765432111
Q ss_pred ----eeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC------CCCceeEEEEee-
Q 005315 395 ----KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN------KNDKIIAFAWEP- 463 (702)
Q Consensus 395 ----~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~------h~~~v~~~~~sp- 463 (702)
..+..... ...+..++...+++..++..........+..|+.....-....-.... ....-.++.+..
T Consensus 331 ~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~ 409 (656)
T 1k3i_A 331 NAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV 409 (656)
T ss_dssp TSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred Cccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC
Confidence 01111100 011234555555554433211111123456666554331110000100 011223444443
Q ss_pred CCcEEEEEEcCC-----CCC---eEEEEEeecccCcCceEEEE--EcCCCc-eeEEEEccCCCEEEEEeccC--------
Q 005315 464 KGHRFAVIHGDS-----PRP---DISFYSMRTAQHAGRVSKLT--TLKGKQ-ANALFWSPSGRFIVLAGLKG-------- 524 (702)
Q Consensus 464 ~g~~l~~~~~d~-----~~~---~v~i~d~~~~~~~~~~~~~~--~~~~~~-v~~~~~spdg~~l~~~~~~~-------- 524 (702)
+++.+++++.+. ... .|.+||..+.. +..+. .++... ..+.+..|+|+.+++++...
T Consensus 410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP----NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC----EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC----eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 566666665321 011 46667664322 22332 233222 34567788999999988521
Q ss_pred CCceEEEEECCCcceeee--ccc--CceeeeEECCCCCEEEEEEe
Q 005315 525 FNGQLEFYNVDELETMAT--AEH--FMATDVEWDPTGRYVATAVT 565 (702)
Q Consensus 525 ~dg~v~i~d~~~~~~~~~--~~~--~~i~~~~~spdg~~l~t~s~ 565 (702)
.-..+.+||..+.+-... ... .......+.|+|+.+++|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 125689999876443221 111 22234567899999998885
No 468
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.90 E-value=0.017 Score=58.48 Aligned_cols=240 Identities=6% Similarity=-0.094 Sum_probs=126.0
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEE
Q 005315 246 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 325 (702)
Q Consensus 246 v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la 325 (702)
..|.+..++ .+|+.+... .|+..++........+....... .+.|.+ .+..|.
T Consensus 36 ~~C~~~~~~-~~ll~~~~~-----------~I~~i~~~g~~~~~~~~~~~~~~--------------~l~~d~-~~~~ly 88 (349)
T 3v64_C 36 RSCKALGPE-PVLLFANRI-----------DIRQVLPHRSEYTLLLNNLENAI--------------ALDFHH-RRELVF 88 (349)
T ss_dssp SCEEESSSC-CEEEEECBS-----------CEEEECTTSCCEEEEECSCSCEE--------------EEEEET-TTTEEE
T ss_pred CcccccccC-ceeEeeccc-----------ceEEEeCCCCeeEEeecCCCceE--------------EEEEec-cccEEE
Confidence 456666663 445444433 47777765544433333333333 678987 666555
Q ss_pred Eec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccc
Q 005315 326 KLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 403 (702)
Q Consensus 326 ~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 403 (702)
... .+.|..+++..................+++.+.+..|.+. .....+|..++.............-....
T Consensus 89 ~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~------d~~~~~I~~~~~dG~~~~~l~~~~l~~P~ 162 (349)
T 3v64_C 89 WSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT------DSGTSRIEVANLDGAHRKVLLWQSLEKPR 162 (349)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEE------ETTTTEEEEEETTSCSCEEEECTTCSCEE
T ss_pred EEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEE------cCCCCeEEEEcCCCCceEEEEeCCCCCcc
Confidence 544 7889999887554221111122345778888766555441 22334677777654321111110111233
Q ss_pred eeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEE
Q 005315 404 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 483 (702)
Q Consensus 404 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 483 (702)
.++++|.+.+|++...... -.|+.+...+.....+ +...-.....++++|++..|+.+.... ..|..+
T Consensus 163 ~iavdp~~g~ly~td~~~~---------~~I~r~~~dG~~~~~~-~~~~~~~PnGla~d~~~~~lY~aD~~~--~~I~~~ 230 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNT---------PRIEASSMDGSGRRII-ADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERA 230 (349)
T ss_dssp EEEEETTTTEEEEEECSSS---------CEEEEEETTSCSCEES-CCSSCSCEEEEEEETTTTEEEEEETTT--TEEEEE
T ss_pred eEEEecCcCeEEEeccCCC---------CEEEEEeCCCCCcEEE-EECCCCCcceEEEeCCCCEEEEEECCC--CEEEEE
Confidence 4577887777776554321 2455555443322111 111234578899999888888776543 278888
Q ss_pred EeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcc
Q 005315 484 SMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE 538 (702)
Q Consensus 484 d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~ 538 (702)
++..... ..+..........+++ . +..|+.+..+ .+.|..++..+++
T Consensus 231 ~~dG~~~----~~~~~~~~~~P~giav-~-~~~ly~td~~--~~~V~~~~~~~G~ 277 (349)
T 3v64_C 231 NLDGSHR----KAVISQGLPHPFAITV-F-EDSLYWTDWH--TKSINSANKFTGK 277 (349)
T ss_dssp ETTSCSC----EEEECSSCSSEEEEEE-E-TTEEEEEETT--TTEEEEEETTTCC
T ss_pred eCCCCce----EEEEeCCCCCceEEEE-E-CCEEEEecCC--CCeEEEEEccCCC
Confidence 8753221 1222222234466776 2 3355555432 5777777754443
No 469
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.89 E-value=0.0057 Score=58.42 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=119.7
Q ss_pred CeeEEEecCCCCEEEE-EcCCCCCCCcCCCccEEEEEEccCCcEEeeccCC--CcccccCCCCCCCCcccceEEEcCCCC
Q 005315 245 QVKLIDFSPGEKYLVT-YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGGKD 321 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t-~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~w~~~~~s~~dg 321 (702)
.+..++|+|++..|++ ...+ +.|...|.. |+.++.+... .+.- .+++.+ ++
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~----------~~I~~ld~~-g~v~~~i~l~g~~D~E--------------GIa~~~-~g 81 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKP----------AAIVEMTTN-GDLIRTIPLDFVKDLE--------------TIEYIG-DN 81 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETT----------EEEEEEETT-CCEEEEEECSSCSSEE--------------EEEECS-TT
T ss_pred CcceeEEeCCCCEEEEEECCC----------CeEEEEeCC-CCEEEEEecCCCCChH--------------HeEEeC-CC
Confidence 5899999998776665 4444 789999986 9888887432 2222 578888 99
Q ss_pred cEEEEec-CCeEEEEecCCccc---ccceee------ccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecC-Ccc
Q 005315 322 KYFAKLG-KNMISVYETESFTL---IDKKSL------KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP-SKE 390 (702)
Q Consensus 322 ~~la~~~-d~~i~v~d~~~~~~---~~~~~~------~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~-~~~ 390 (702)
.++++.. ++.+.++++..... +..... ...+...++|+|.++.|.+ +....+..|+.++.. ...
T Consensus 82 ~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-----a~E~~p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 82 QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-----FKEKNPIEVYKVNGLLSSN 156 (255)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-----EEESSSEEEEEEESTTCSS
T ss_pred EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-----EECcCCceEEEEcccccCC
Confidence 8877655 88899998765442 111111 2234689999999977776 223345577777721 111
Q ss_pred eeeee-------eecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-------CCce
Q 005315 391 ELRQK-------NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-------NDKI 456 (702)
Q Consensus 391 ~~~~~-------~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-------~~~v 456 (702)
.+... ..+......++++|....|++.++... .|..++..+.....+.+... -...
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~----------~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qp 226 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESR----------ALQEVTLVGEVIGEMSLTKGSRGLSHNIKQA 226 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTT----------EEEEECTTCCEEEEEECSTTGGGCSSCCCSE
T ss_pred ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCC----------eEEEEcCCCCEEEEEEcCCccCCcccccCCC
Confidence 11110 111223345678888888887777654 67777777776666777421 1256
Q ss_pred eEEEEeeCCcEEEEEEcCC
Q 005315 457 IAFAWEPKGHRFAVIHGDS 475 (702)
Q Consensus 457 ~~~~~sp~g~~l~~~~~d~ 475 (702)
..+++.|+|+.++ ++...
T Consensus 227 EGia~d~~G~lyI-vsE~n 244 (255)
T 3qqz_A 227 EGVAMDASGNIYI-VSEPN 244 (255)
T ss_dssp EEEEECTTCCEEE-EETTT
T ss_pred CeeEECCCCCEEE-EcCCc
Confidence 7899999997444 45533
No 470
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.89 E-value=0.05 Score=59.68 Aligned_cols=159 Identities=8% Similarity=0.011 Sum_probs=94.5
Q ss_pred ceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEE
Q 005315 403 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 482 (702)
Q Consensus 403 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 482 (702)
..+.|.+.+..|++...... .|+++...+.....+.. ..-.....+++.+.+..|+.+.... ..|.+
T Consensus 352 ~~ld~d~~~~~ly~sD~~~~----------~I~r~~~~g~~~~~v~~-~~~~~p~GlAvD~~~~~lY~tD~~~--~~I~v 418 (619)
T 3s94_A 352 IAIDYDPVEGYIYWTDDEVR----------AIRRSFIDGSGSQFVVT-AQIAHPDGIAVDWVARNLYWTDTGT--DRIEV 418 (619)
T ss_dssp EEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTT--TEEEE
T ss_pred EEEEEEcCCCeEEEEeCCCC----------eEEEEEcCCCccEEEEE-CCCCCcCceEEecccCcEEEEeCCC--CcEEE
Confidence 34567776666666544322 46666554433222221 2234667889987666666664432 28888
Q ss_pred EEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcc--eeeecccCceeeeEECCCCCEE
Q 005315 483 YSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE--TMATAEHFMATDVEWDPTGRYV 560 (702)
Q Consensus 483 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~--~~~~~~~~~i~~~~~spdg~~l 560 (702)
.++.... ...+..-.-.....+++.|...+|+.+..+. .+.|...+++... .+........+.+++++++..|
T Consensus 419 ~~~~G~~----~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~-~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~L 493 (619)
T 3s94_A 419 TRLNGTM----RKILISEDLEEPRAIVLDPMVGYMYWTDWGE-IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKI 493 (619)
T ss_dssp EETTSCS----CEEEECTTCCSEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred EeCCCCe----EEEEEECCCCCeeeEEEEcCCCcEEEecCCC-CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEE
Confidence 8875322 1122221223568899999866777765433 4678777777432 2323334567899999988888
Q ss_pred EEEEeecccccccEEEEEeccce
Q 005315 561 ATAVTSVHEMENGFNIWSFNGKL 583 (702)
Q Consensus 561 ~t~s~~~~~~d~~v~iw~~~g~~ 583 (702)
..+... .+.|..++++|..
T Consensus 494 Y~aD~~----~~~I~~~~~dG~~ 512 (619)
T 3s94_A 494 YWGDAK----TDKIEVMNTDGTG 512 (619)
T ss_dssp EEEETT----TTEEEEEESSSCC
T ss_pred EEEECC----CCEEEEEecCCCc
Confidence 877663 4567777777653
No 471
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.89 E-value=2.2e-05 Score=74.43 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=51.0
Q ss_pred hhhHHHhHhcccc-ccEEeec----CCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEecc
Q 005315 72 KEKFEKLEGVIKE-DGLWMPV----DPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFD 136 (702)
Q Consensus 72 ~~~~~~l~~~~~~-~~~~~~~----d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h~~~v~~~~ 136 (702)
++++...|+.+|+ .++.+|. ++++++++||+||+|.+.++|.+|++.|||..++++ .+.+.-+.
T Consensus 143 ~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr-~i~~~~~~ 211 (222)
T 3dxb_A 143 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR-KVVAEVYD 211 (222)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS-BCEEEECC
T ss_pred HHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe-EEEEEEcC
Confidence 3455566667777 4777874 445679999999999999999999999999999988 77766544
No 472
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=0.012 Score=61.53 Aligned_cols=109 Identities=11% Similarity=0.075 Sum_probs=59.9
Q ss_pred CeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcE
Q 005315 245 QVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 323 (702)
Q Consensus 245 ~v~~i~fSp-dg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~ 323 (702)
....|+|+| ++..|..+... +.|+.+|+.++...........+. .++|++ ++++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~----------~~I~~id~~~~~v~~~~~~~~~P~--------------~ia~d~-~G~~ 192 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ----------HPTRLIDFEKEYVSTVYSGLSKVR--------------TICWTH-EADS 192 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT----------EEEEEEETTTTEEEEEECCCSCEE--------------EEEECT-TSSE
T ss_pred CCCEEEECCCCCCeEEEEeCC----------CcEEEEECCCCEEEEEecCCCCcc--------------eEEEeC-CCCE
Confidence 467899998 46667776665 679999986665443333222222 689999 9985
Q ss_pred EEEec--CC----eEEEEecCCccccccee-eccCCeeEEEeCC-CCCeEEEEeecCCCCCCCcEEEEEec
Q 005315 324 FAKLG--KN----MISVYETESFTLIDKKS-LKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQI 386 (702)
Q Consensus 324 la~~~--d~----~i~v~d~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~ 386 (702)
|..+. ++ .+.+++ ..+....... ........++++| +|.++++ .....+|+.++.
T Consensus 193 lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~-------d~~~~~V~~~~~ 255 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILT-RESGFKVITELTKGQNCNGAETHPINGELYFN-------SWNAGQVFRYDF 255 (430)
T ss_dssp EEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEECSSCCCEEECTTTCCEEEE-------ETTTTEEEEEET
T ss_pred EEEEeCCCCcccceEEEEe-CCCceeeeeeeccCCCceEEEEeCCCCEEEEE-------ECCCCEEEEEEC
Confidence 55444 22 233333 3333321111 1233456777888 4554443 223345655554
No 473
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.84 E-value=0.0058 Score=66.60 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=35.2
Q ss_pred cCCCEEEEEeccCCCceEEEEECCCcceeeeccc---CceeeeEECCCCC-EEEEEEe
Q 005315 512 PSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGR-YVATAVT 565 (702)
Q Consensus 512 pdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~---~~i~~~~~spdg~-~l~t~s~ 565 (702)
..|..+++++. ||.|+.||..+++++-+... ...+-+.|..+|+ ||++.+.
T Consensus 482 tagg~vf~gt~---dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 482 TAGDLVFYGTL---DGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp ETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ecCCEEEEECC---CCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 35667777776 99999999999998875332 2223466678887 4555444
No 474
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.83 E-value=0.036 Score=56.13 Aligned_cols=186 Identities=8% Similarity=-0.065 Sum_probs=102.4
Q ss_pred ccceEEECCCCcEEEEEeCCceEEeecCcCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005315 205 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 283 (702)
Q Consensus 205 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~-~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~ 283 (702)
..+|.+..++ .+|+++....|+..+.. +....... ....+..++|++.+..|...... .+.|..+++.
T Consensus 35 ~~~C~~~~~~-~~ll~~~~~~I~~i~~~-g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~---------~~~I~r~~~~ 103 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFANRIDIRQVLPH-RSEYTLLLNNLENAIALDFHHRRELVFWSDVT---------LDRILRANLN 103 (349)
T ss_dssp SSCEEESSSC-CEEEEECBSCEEEECTT-SCCEEEEECSCSCEEEEEEETTTTEEEEEETT---------TTEEEEEETT
T ss_pred CCcccccccC-ceeEeecccceEEEeCC-CCeeEEeecCCCceEEEEEeccccEEEEEecc---------CCceEEEecC
Confidence 3456666664 46666666778877777 33322222 23458899999877766655432 1688899976
Q ss_pred CCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe-c-CCeEEEEecCCcccccceeeccCCeeEEEeCCC
Q 005315 284 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPT 361 (702)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~-~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~ 361 (702)
.+.....+...... +. .+++.+ .+..|... . .+.|.+.++..................+++.|.
T Consensus 104 g~~~~~~~~~~~~~--------p~-----glavd~-~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~ 169 (349)
T 3v64_C 104 GSNVEEVVSTGLES--------PG-----GLAVDW-VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM 169 (349)
T ss_dssp SCSCEEEECSSCSC--------CC-----EEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETT
T ss_pred CCCceEEEeCCCCC--------cc-----EEEEec-CCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecC
Confidence 55432222211111 11 456665 44444333 3 788999988743221111112345788999997
Q ss_pred CCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcc
Q 005315 362 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 362 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 420 (702)
+..|.+ .......+|+.++.............-.....+++++++..|++....
T Consensus 170 ~g~ly~-----td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 170 EGTIYW-----TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp TTEEEE-----EECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred cCeEEE-----eccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence 776654 112224678888765432111100011123356789888888776543
No 475
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.83 E-value=0.015 Score=58.25 Aligned_cols=251 Identities=10% Similarity=0.022 Sum_probs=126.9
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcc------------cccCCCCCCCCcccc
Q 005315 245 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE------------FAVGGTGGVAGVSWP 312 (702)
Q Consensus 245 ~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~------------~~~~~~~~~~~~~w~ 312 (702)
...+++|+++|+++.++..+ +.|..|+..++.. ..+...... ........+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~----------~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~----- 83 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQD----------GRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTY----- 83 (322)
T ss_dssp CCCCEECCTTCSSEEEECTT----------SEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-----
T ss_pred CceEEEEcCCCCEEEEEcCC----------CeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCc-----
Confidence 46788999999977777777 7899998765543 322211000 0000000011
Q ss_pred eEEEcCCCCcEEEEecCCeEEEEecCCccc--cccee--eccCCeeEEEeCC-CCCeEEEEeecC-C---------CCCC
Q 005315 313 VFRWGGGKDKYFAKLGKNMISVYETESFTL--IDKKS--LKVENVMDFSWSP-TDPIISLFVPEL-G---------GGNQ 377 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~d~~i~v~d~~~~~~--~~~~~--~~~~~v~~~~~sp-~~~~la~~~~~~-~---------~~~~ 377 (702)
.+++.+.+++++++...+.|..++..++.. +.... .......++++.| +|++.+.-.... . ....
T Consensus 84 gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp EEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred eEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCC
Confidence 467775134444443455588888765532 11110 1122467899999 887655410000 0 0022
Q ss_pred CcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCC-cceeEE-EecCCCCc
Q 005315 378 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD-IPIEVL-ELDNKNDK 455 (702)
Q Consensus 378 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~-~l~~h~~~ 455 (702)
...|+.++....+...... .-.....++|+++|++|+++..... .+..|++.... .....+ .+ .+
T Consensus 164 ~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~--------~I~~~~~~~~~~~~~~~~~~~---~g- 230 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSH--------QIVKYWLEGPKKGTAEVLVKI---PN- 230 (322)
T ss_dssp CEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGT--------EEEEEESSSTTTTCEEEEEEC---SS-
T ss_pred CceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCC--------eEEEEECCCCcCCccceEEeC---CC-
Confidence 3678888865543211111 1122335689999998877654322 14444443211 111111 22 33
Q ss_pred eeEEEEeeCCcEEEEEEcC-------CCCCeEEEEEeecccCcCceEEEEEc--CC----CceeEEEEccCCCEEEEEec
Q 005315 456 IIAFAWEPKGHRFAVIHGD-------SPRPDISFYSMRTAQHAGRVSKLTTL--KG----KQANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 456 v~~~~~sp~g~~l~~~~~d-------~~~~~v~i~d~~~~~~~~~~~~~~~~--~~----~~v~~~~~spdg~~l~~~~~ 522 (702)
...+++.++|+.+++.... +....|..++.. +. .+..+ +. ..+..+++ .+|+.+++...
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~------~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~ 302 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN------ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF 302 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC------EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CC------EEEEEECCCCCccccceEEEE-eCCEEEEeecC
Confidence 7789999999866665441 000146666642 11 23222 21 23555665 45544444333
Q ss_pred cCCCceEEEEECC
Q 005315 523 KGFNGQLEFYNVD 535 (702)
Q Consensus 523 ~~~dg~v~i~d~~ 535 (702)
.+.|..+++.
T Consensus 303 ---~~~i~~~~~~ 312 (322)
T 2fp8_A 303 ---HGSVGILVYD 312 (322)
T ss_dssp ---CSEEEEEEC-
T ss_pred ---CCceEEEecc
Confidence 6788888876
No 476
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.81 E-value=0.0028 Score=70.65 Aligned_cols=278 Identities=12% Similarity=0.047 Sum_probs=141.9
Q ss_pred eEEECC-CCcEEEEEeCC------------ceEEeecCcCcc--eeeeecCC---CeeEEEecCCCCEEEEEcCCCCCCC
Q 005315 208 FVQWSP-LGTYLATVHRQ------------GAAVWGGANTFN--RLMRYAHP---QVKLIDFSPGEKYLVTYSSHEPSNP 269 (702)
Q Consensus 208 ~v~~Sp-dg~~lat~~~~------------~i~iw~~~~~~~--~~~~~~~~---~v~~i~fSpdg~~l~t~s~d~~~~~ 269 (702)
.+++.| +|+.+++|+.+ .+.+||.. +.+ .+...+.+ ...++++.++|+.+++|+.+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~-t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~---- 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPS-TGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---- 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTT-TCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST----
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCC-CCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC----
Confidence 567777 89999988642 15688876 333 33333222 245678889999999998651
Q ss_pred cCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--C-----CeEEEEecCCccc
Q 005315 270 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--K-----NMISVYETESFTL 342 (702)
Q Consensus 270 ~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d-----~~i~v~d~~~~~~ 342 (702)
..+.+||..+++-...-..+.... .......+ ++++++.++ + ..+.+||..+...
T Consensus 265 -----~~v~~yd~~t~~W~~~~~~~~~R~------------~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 265 -----KKTSLYDSSSDSWIPGPDMQVARG------------YQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp -----TCEEEEEGGGTEEEECCCCSSCCS------------SCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred -----CceEEecCcCCceeECCCCCcccc------------ccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 469999988775433221111110 12456677 889888877 3 5689999876542
Q ss_pred ccc-----eeeccCCeeEEEeCCCCCeEEEEeecCCCCCC-------CcEEEEEecCCcceeeeeeecc---------cc
Q 005315 343 IDK-----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQ-------PARVSLVQIPSKEELRQKNLFS---------VS 401 (702)
Q Consensus 343 ~~~-----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~---------~~ 401 (702)
... ....... ....+..++..+++ ++.++ ...+..|+.............. ..
T Consensus 327 ~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~-----Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~ 400 (656)
T 1k3i_A 327 TSLPNAKVNPMLTAD-KQGLYRSDNHAWLF-----GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC 400 (656)
T ss_dssp EEETTSCSGGGCCCC-TTGGGTTTCSCCEE-----ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred eeCCCcccccccccc-ccceeecCCceEEE-----ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence 211 0000000 01223344555554 33332 2356667765544222111111 11
Q ss_pred cceeEEc-cCCCEEEEEEcccccccccccc---cEEEEEEecCCcceeEE---EecCCCCceeEEEEeeCCcEEEEEEcC
Q 005315 402 DCKMYWQ-SSGDYLAVKVDRYTKTKKSTYT---GFELFRIKERDIPIEVL---ELDNKNDKIIAFAWEPKGHRFAVIHGD 474 (702)
Q Consensus 402 ~~~~~~s-~~g~~l~~~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~~---~l~~h~~~v~~~~~sp~g~~l~~~~~d 474 (702)
...+.+. .+++.++++..+... ...... .+.+|+.... .-..+ .+ .....-.+++..|+|+.+++++.+
T Consensus 401 ~~av~~~~~~~~i~v~GG~~~~~-~~~~~~~~~~v~~yd~~~~--~W~~~~~~~m-p~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 401 GNAVMYDAVKGKILTFGGSPDYQ-DSDATTNAHIITLGEPGTS--PNTVFASNGL-YFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CEEEEEETTTTEEEEECCBSSSS-SSBCCCCEEEEECCSTTSC--CEEEECTTCC-SSCCBSCEEEECTTSCEEEECCBS
T ss_pred CceEeccCCCCeEEEEeCCCCCC-CCCcCCcceEEEcCCCCCC--CeeEEccCCC-CCCcccCCeEECCCCCEEEECCcc
Confidence 1222233 356666665432110 000011 2333332211 11111 11 112223455677899999888754
Q ss_pred C--------CCCeEEEEEeecccCcCceEEEEEcCCCc--eeEEEEccCCCEEEEEec
Q 005315 475 S--------PRPDISFYSMRTAQHAGRVSKLTTLKGKQ--ANALFWSPSGRFIVLAGL 522 (702)
Q Consensus 475 ~--------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~--v~~~~~spdg~~l~~~~~ 522 (702)
. ....+.+||..+.. +..+..+.... .....+.|+|+.+++|+.
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~----W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDT----FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTE----EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCcCCCCcccceEEEcCCCCc----eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 1 13478999986532 33333332221 234556799999999874
No 477
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.79 E-value=0.0053 Score=68.34 Aligned_cols=301 Identities=10% Similarity=0.068 Sum_probs=152.7
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCccccc-CCC-CCCCCcccceEEEcCCCCcEEEEecCCeE
Q 005315 255 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV-GGT-GGVAGVSWPVFRWGGGKDKYFAKLGKNMI 332 (702)
Q Consensus 255 g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~-~~~-~~~~~~~w~~~~~s~~dg~~la~~~d~~i 332 (702)
+..|++++.+ +.|..+|..+|+.+-.+......... ... ..+.. .+.. . +++.++...++.|
T Consensus 66 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~-~-~~~v~v~~~dg~l 129 (668)
T 1kv9_A 66 DGVIYTSMSW----------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR----GVAL-W-GDKVYVGTLDGRL 129 (668)
T ss_dssp TTEEEEEEGG----------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC----CCEE-E-BTEEEEECTTSEE
T ss_pred CCEEEEECCC----------CeEEEEECCCChhceEECCCCCccccccccccCCcc----ceEE-E-CCEEEEEcCCCEE
Confidence 4456666666 78999999999998887654322100 000 00000 1122 1 3444444349999
Q ss_pred EEEecCCcccccceeeccC-CeeEEEeCC--CCCeEEEEeecCCCCC----CCcEEEEEecCCcceeeeeeecc------
Q 005315 333 SVYETESFTLIDKKSLKVE-NVMDFSWSP--TDPIISLFVPELGGGN----QPARVSLVQIPSKEELRQKNLFS------ 399 (702)
Q Consensus 333 ~v~d~~~~~~~~~~~~~~~-~v~~~~~sp--~~~~la~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~------ 399 (702)
..+|..+++.+.+...... ....+.-+| .+..+++ +..+ ....|+.++..+.+.+-......
T Consensus 130 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~v-----g~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~ 204 (668)
T 1kv9_A 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVII-----GNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALP 204 (668)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEE-----CCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred EEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEE-----eCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcc
Confidence 9999999998876544211 001111122 1233333 2221 24567777776665433222100
Q ss_pred -------------------------cccceeEEccCCCEEEEEEccccc---------ccccccccEEEEEEecCC-cce
Q 005315 400 -------------------------VSDCKMYWQSSGDYLAVKVDRYTK---------TKKSTYTGFELFRIKERD-IPI 444 (702)
Q Consensus 400 -------------------------~~~~~~~~s~~g~~l~~~~~~~~~---------~~~~~~~~~~l~~l~~~~-~~~ 444 (702)
..-..+.+++++..+++++.+... .....|.. .|+-++... ...
T Consensus 205 ~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~-~v~AlD~~tG~~~ 283 (668)
T 1kv9_A 205 YEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS-SILAIRPDTGKLA 283 (668)
T ss_dssp CSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT-EEEEECTTTCCEE
T ss_pred ccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee-eEEEEcCCCCcee
Confidence 000124566777778777655421 00001110 233343222 112
Q ss_pred eEEEecCCC-------CceeEEEEeeCCc---EEEEEEcCCCCCeEEEEEeecccCcCc-------e---------EEEE
Q 005315 445 EVLELDNKN-------DKIIAFAWEPKGH---RFAVIHGDSPRPDISFYSMRTAQHAGR-------V---------SKLT 498 (702)
Q Consensus 445 ~~~~l~~h~-------~~v~~~~~sp~g~---~l~~~~~d~~~~~v~i~d~~~~~~~~~-------~---------~~~~ 498 (702)
-......|. .++....+..+|+ .+++++.++ .++++|..+++.... + .++.
T Consensus 284 W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~ 360 (668)
T 1kv9_A 284 WHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNG---FFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVE 360 (668)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS---EEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEE
T ss_pred eEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCC---EEEEEECCCCCEeccccccccccccccccccCCccc
Confidence 222222222 2222233334665 566666677 888888776652100 0 0000
Q ss_pred ------------EcC----CCceeEEEEccCCCEEEEEec---------------------------------cCCCceE
Q 005315 499 ------------TLK----GKQANALFWSPSGRFIVLAGL---------------------------------KGFNGQL 529 (702)
Q Consensus 499 ------------~~~----~~~v~~~~~spdg~~l~~~~~---------------------------------~~~dg~v 529 (702)
.++ ++.-..++++|+...+++... ...+|.|
T Consensus 361 ~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l 440 (668)
T 1kv9_A 361 APGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGAL 440 (668)
T ss_dssp CTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEE
T ss_pred cccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceE
Confidence 000 001123788888777665211 0124889
Q ss_pred EEEECCCcceeeecc-cCceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceee
Q 005315 530 EFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLY 585 (702)
Q Consensus 530 ~i~d~~~~~~~~~~~-~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~ 585 (702)
.-||+.+++.+-+.. ........+...|..|++++. |+.++.||.. |+.+.
T Consensus 441 ~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~-----dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 441 LAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA-----AGQMHAYSADKGEALW 493 (668)
T ss_dssp EEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-----TSEEEEEETTTCCEEE
T ss_pred EEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECC-----cccchhhhhhcChhhe
Confidence 999999998876533 234444556667888888877 8999999875 55543
No 478
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.74 E-value=0.044 Score=54.56 Aligned_cols=223 Identities=7% Similarity=-0.084 Sum_probs=119.1
Q ss_pred EEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCc---ccccce-eec
Q 005315 276 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESF---TLIDKK-SLK 349 (702)
Q Consensus 276 ~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~---~~~~~~-~~~ 349 (702)
.|+..|+.++.....+....... .+.|.+ .+..|..+. .+.|..+++.+. ...... ...
T Consensus 11 ~I~~i~~~~~~~~~~~~~~~~p~--------------g~~~d~-~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~ 75 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPNLRNVV--------------ALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 75 (316)
T ss_dssp SEEEEETTSCCCEEEECSCSSEE--------------EEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred eEEEEECCCcceEehhcCCCceE--------------EEEEEe-CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC
Confidence 48888987766555444333333 678988 766555554 789999988751 111111 112
Q ss_pred cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccc
Q 005315 350 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 429 (702)
Q Consensus 350 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 429 (702)
......+++.+.+..|.+. .....+|..++.............-.....++.+|.+.+|++......
T Consensus 76 ~~~p~glavd~~~~~ly~~------d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~------- 142 (316)
T 1ijq_A 76 IQAPDGLAVDWIHSNIYWT------DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------- 142 (316)
T ss_dssp CSCCCEEEEETTTTEEEEE------ETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-------
T ss_pred CCCcCEEEEeecCCeEEEE------ECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCC-------
Confidence 2346788888765555431 223446677776543211111101112334567887777766543210
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcC--CCceeE
Q 005315 430 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANA 507 (702)
Q Consensus 430 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~ 507 (702)
-.|+.+...+.....+ ....-.....++|+|++..|+.+.... ..|..+++.... ...+.... ......
T Consensus 143 --~~I~~~~~dG~~~~~~-~~~~~~~P~gla~d~~~~~lY~~D~~~--~~I~~~d~dg~~----~~~~~~~~~~~~~P~g 213 (316)
T 1ijq_A 143 --AKIKKGGLNGVDIYSL-VTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGN----RKTILEDEKRLAHPFS 213 (316)
T ss_dssp --CEEEEEETTSCCEEEE-ECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCS----CEEEEECTTTTSSEEE
T ss_pred --CeEEEEcCCCCCeEEE-EECCCCCceEEEEeccCCEEEEEECCC--CeEEEEecCCCc----eEEEeecCCccCCcEE
Confidence 1455555443332222 112235678899999888888776533 288888885322 12333321 123456
Q ss_pred EEEccCCCEEEEEeccCCCceEEEEECCCcce
Q 005315 508 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 539 (702)
Q Consensus 508 ~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~ 539 (702)
+++. +..|+.+..+ .+.|..++..+++.
T Consensus 214 iav~--~~~ly~~d~~--~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 214 LAVF--EDKVFWTDII--NEAIFSANRLTGSD 241 (316)
T ss_dssp EEEE--TTEEEEEETT--TTEEEEEETTTCCC
T ss_pred EEEE--CCEEEEEECC--CCeEEEEeCCCCcc
Confidence 6764 3455555432 67888888765543
No 479
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.72 E-value=0.018 Score=60.23 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=79.4
Q ss_pred CeeEEEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCc
Q 005315 245 QVKLIDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 322 (702)
Q Consensus 245 ~v~~i~fSpd--g~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~ 322 (702)
....++|+|+ +..|..+... +.|+.+|..++...........+. .++|++ +|+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~----------~~I~~id~~~g~v~~~~~~~~~P~--------------giavd~-dG~ 194 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR----------DAFRHVDFVNQYVDIKTTNIGQCA--------------DVNFTL-NGD 194 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT----------SCEEEEETTTTEEEEECCCCSCEE--------------EEEECT-TCC
T ss_pred CCceEEEccccCCCEEEEEeCC----------CCEEEEECCCCEEEEeecCCCCcc--------------EEEECC-CCC
Confidence 3568999995 4455555543 469999987777555443222222 689999 999
Q ss_pred EEEEecCC-----eEEEEecCCccccc-ceeeccCCeeEEEeCC-CCCeEEEEeecCCCCCCCcEEEEEecCCcceeeee
Q 005315 323 YFAKLGKN-----MISVYETESFTLID-KKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 395 (702)
Q Consensus 323 ~la~~~d~-----~i~v~d~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 395 (702)
++++...+ .+..++.. +.... ...........++++| +|.+.+. .....+|+.++..........
T Consensus 195 lyVad~~~~~~~~gv~~~~~~-~~~~~~~~~~~~~~P~giavd~~~G~lyv~-------d~~~~~V~~~d~~~g~~~~~~ 266 (433)
T 4hw6_A 195 MVVVDDQSSDTNTGIYLFTRA-SGFTERLSLCNARGAKTCAVHPQNGKIYYT-------RYHHAMISSYDPATGTLTEEE 266 (433)
T ss_dssp EEEEECCSCTTSEEEEEECGG-GTTCCEEEEEECSSBCCCEECTTTCCEEEC-------BTTCSEEEEECTTTCCEEEEE
T ss_pred EEEEcCCCCcccceEEEEECC-CCeeccccccccCCCCEEEEeCCCCeEEEE-------ECCCCEEEEEECCCCeEEEEE
Confidence 55554321 23333322 22211 1111233457789999 5554443 334557888887644431111
Q ss_pred -eec-ccccceeEEccCCCEEEEEEcc
Q 005315 396 -NLF-SVSDCKMYWQSSGDYLAVKVDR 420 (702)
Q Consensus 396 -~~~-~~~~~~~~~s~~g~~l~~~~~~ 420 (702)
... ......++|+|+|++|++....
T Consensus 267 ~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 267 VMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp EECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred eccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 111 1112247899999987776654
No 480
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=7e-05 Score=57.46 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=51.4
Q ss_pred CcEEEECCCCC------CCh---hhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 005315 59 GNIIVVDNLPV------VPK---EKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 128 (702)
Q Consensus 59 ~~~~~v~~lp~------~~~---~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~h 128 (702)
+.+|+|...|. .++ ..+...|..+|+ ..+.++.|+ +||+|.+.+.|.+|+. |||++++++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr- 76 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR- 76 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE-
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe-
Confidence 45677766652 343 345666667886 578888774 8999999999999998 999999988
Q ss_pred EEEEEec
Q 005315 129 IFAVNMF 135 (702)
Q Consensus 129 ~~~v~~~ 135 (702)
.++|+.-
T Consensus 77 ~LkV~lk 83 (91)
T 2dnr_A 77 TITIALK 83 (91)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8998863
No 481
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.66 E-value=0.013 Score=58.62 Aligned_cols=244 Identities=10% Similarity=0.033 Sum_probs=125.8
Q ss_pred eEEEcCCCCcEEEEec-CCeEEEEecCCccccccee-------------------eccCCeeEEEeCC-CCCeEEEEeec
Q 005315 313 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS-------------------LKVENVMDFSWSP-TDPIISLFVPE 371 (702)
Q Consensus 313 ~~~~s~~dg~~la~~~-d~~i~v~d~~~~~~~~~~~-------------------~~~~~v~~~~~sp-~~~~la~~~~~ 371 (702)
.++|.+ +++++.+.. ++.|..|+..++....-.. .....+..+++.+ ++++++.
T Consensus 23 ~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~---- 97 (322)
T 2fp8_A 23 SFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV---- 97 (322)
T ss_dssp CEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE----
T ss_pred EEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE----
Confidence 578999 998555554 8899999877543321000 0123478899998 6655443
Q ss_pred CCCCCCCcEEEEEecCCcc--eeeeeee--cccccceeEEcc-CCCEEEEEEcccccccc------cccccEEEEEEecC
Q 005315 372 LGGGNQPARVSLVQIPSKE--ELRQKNL--FSVSDCKMYWQS-SGDYLAVKVDRYTKTKK------STYTGFELFRIKER 440 (702)
Q Consensus 372 ~~~~~~~~~i~~~~~~~~~--~~~~~~~--~~~~~~~~~~s~-~g~~l~~~~~~~~~~~~------~~~~~~~l~~l~~~ 440 (702)
... ..+..++..... .+..... .......+.+.+ +|...++.......... .....-.++.++..
T Consensus 98 -d~~---~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 98 -DCY---YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp -ETT---TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred -ECC---CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 111 236667654332 1111100 001123467788 88655443221000000 00011245555543
Q ss_pred CcceeEEEecCCCCceeEEEEeeCCcEEEEEEc-CCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEE
Q 005315 441 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVL 519 (702)
Q Consensus 441 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 519 (702)
......+.- .......++|+|+|++|+++.. .+ .|..|++..... .....+..+.+ ...+++.++|++.++
T Consensus 174 ~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~---~I~~~~~~~~~~-~~~~~~~~~~g--P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 174 TKETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSH---QIVKYWLEGPKK-GTAEVLVKIPN--PGNIKRNADGHFWVS 245 (322)
T ss_dssp TTEEEEEEE--EESCCCEEEECTTSSEEEEEEGGGT---EEEEEESSSTTT-TCEEEEEECSS--EEEEEECTTSCEEEE
T ss_pred CCEEEEecc--CCccCcceEECCCCCEEEEEeCCCC---eEEEEECCCCcC-CccceEEeCCC--CCCeEECCCCCEEEE
Confidence 222221110 0234567899999997777654 34 899999864221 12233334433 678999999986555
Q ss_pred Eecc-------CCCceEEEEECCCcceeeecc------cCceeeeEECCCCCEEEEEEeecccccccEEEEEec
Q 005315 520 AGLK-------GFNGQLEFYNVDELETMATAE------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 520 ~~~~-------~~dg~v~i~d~~~~~~~~~~~------~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
.... ...+.|..+|.. ++.+.... ...++.+++ .+|+.+++... .+.|..+++.
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~-----~~~i~~~~~~ 312 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF-----HGSVGILVYD 312 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS-----CSEEEEEEC-
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecC-----CCceEEEecc
Confidence 4320 003568888875 55544321 134556665 35544444334 5778887765
No 482
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.62 E-value=0.011 Score=58.45 Aligned_cols=229 Identities=8% Similarity=0.050 Sum_probs=124.4
Q ss_pred EcCCCCcEEEEec---CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCC-------CCCcEEEEEe
Q 005315 316 WGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG-------NQPARVSLVQ 385 (702)
Q Consensus 316 ~s~~dg~~la~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~-------~~~~~i~~~~ 385 (702)
|+. +|.+|.... ++.|...+..... ..+ +... ..--++++|.+|.+.....+.. .....|+.++
T Consensus 21 ~~~-~g~~iy~~n~~d~~~ly~~~~dg~~-~~~--l~~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCE-SDGEVFFSNTNDNGRLYAMNIDGSN-IHK--LSND--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEE-ETTEEEEEEGGGTTEEEEEETTSCS-CEE--EEEE--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEE-eCCEEEEEeCCCCceEEEEcCCCCC-CEE--ccCC--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 345 677766664 4555555544322 111 1111 2234688999999843221000 0134677777
Q ss_pred cCCcceeeeeeecccccceeEEccCCCEEEEEE--cccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEee
Q 005315 386 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV--DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 463 (702)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 463 (702)
+...+...... .....|+++|++|+... ... ...||.+...+.....+. .+. + .+++|
T Consensus 95 ~dg~~~~~l~~-----~~~~~~s~~g~~Iy~~~~~~~~---------~~~Iy~~~~dGs~~~~lt--~~~--~--~~~~~ 154 (302)
T 3s25_A 95 RNGHGSTVLDP-----DPCIYASLIGNYIYYLHYDTQT---------ATSLYRIRIDGEEKKKIK--NHY--L--FTCNT 154 (302)
T ss_dssp TTSCCCEEEEC-----SCEEEEEEETTEEEEEEESSSS---------CEEEEEEETTSCCCEEEE--SSC--C--CCSEE
T ss_pred CCCCcceEeec-----CCccEEEEeCCEEEEEeecCCC---------CceEEEEECCCCCeEEEe--CCC--c--eEeeE
Confidence 66554211111 11236789999999876 122 247888887665443333 222 2 45688
Q ss_pred CCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeec
Q 005315 464 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA 543 (702)
Q Consensus 464 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~ 543 (702)
+|+.|+..+... +.|...++..+.. +.+ + ..... ..++|+|++|+....+. ...|..-+++........
T Consensus 155 ~g~~iy~t~~g~--~~Iy~~~l~g~~~----~~l--~-~~~~~-~~~~P~g~~iy~t~~~~-~~~I~~~~ldG~~~~~Lt 223 (302)
T 3s25_A 155 SDRYFYYNNPKN--GQLYRYDTASQSE----ALF--Y-DCNCY-KPVVLDDTNVYYMDVNR-DNAIVHVNINNPNPVVLT 223 (302)
T ss_dssp ETTEEEEECTTT--CCEEEEETTTTEE----EEE--E-CSCEE-EEEEEETTEEEEEEGGG-TTEEEEECSSSCCCEECS
T ss_pred ECCEEEEEeCCC--ceEEEEECCCCCE----EEE--e-CCCcc-ceeeecCCEEEEEEcCC-CcEEEEEECCCCCeEEEe
Confidence 999999886622 2676666643321 122 2 23333 34669999999887522 246777777754432221
Q ss_pred ccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee
Q 005315 544 EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT 587 (702)
Q Consensus 544 ~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~ 587 (702)
...+ ..|+|+|++|..++... .+.|..-+++|......
T Consensus 224 -~~~~--~~~~~~g~~Iy~~~~~~---~~~i~~~~~DG~~r~~l 261 (302)
T 3s25_A 224 -EANI--EHYNVYGSLIFYQRGGD---NPALCVVKNDGTGFKEL 261 (302)
T ss_dssp -CSCE--EEEEEETTEEEEEECSS---SCEEEEEETTSCCCEEE
T ss_pred -CCCc--ceEEECCCEEEEEECCC---CcEEEEEECCCCccEEe
Confidence 1222 45899999998765410 34555556677544333
No 483
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.62 E-value=0.13 Score=56.52 Aligned_cols=161 Identities=9% Similarity=0.013 Sum_probs=93.1
Q ss_pred eeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-----CCCCceeEEEEeeCCcEEEEEEcCCCCC
Q 005315 404 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-----NKNDKIIAFAWEPKGHRFAVIHGDSPRP 478 (702)
Q Consensus 404 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-----~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 478 (702)
.+.|.+....|+....... .|+++...+.....+... .....+..+++...++.|+.+.... .
T Consensus 344 ~ld~d~~~~~iy~sD~~~~----------~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~--~ 411 (628)
T 4a0p_A 344 AIDYDPLDKQLYWIDSRQN----------MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEAT--N 411 (628)
T ss_dssp EEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTT--T
T ss_pred EEEEecCCCeEEEEecCcc----------eEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCC--C
Confidence 4566666666665543322 455555433322222111 0134678899998877777665432 2
Q ss_pred eEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCc-eEEEEECCCcce--eeecccCceeeeEECC
Q 005315 479 DISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNG-QLEFYNVDELET--MATAEHFMATDVEWDP 555 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg-~v~i~d~~~~~~--~~~~~~~~i~~~~~sp 555 (702)
.|.+.++.... ...+..-.......|++.|...+|+.+..+. .. .|...+++.... +....-...+.+++++
T Consensus 412 ~I~v~~~~G~~----~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~-~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~ 486 (628)
T 4a0p_A 412 VINVTRLDGRS----VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE-RSPKIERAALDGTEREVLFFSGLSKPIALALDS 486 (628)
T ss_dssp EEEEEETTSCE----EEEEEECTTCCEEEEEEETTTTEEEEEEEET-TEEEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred EEEEEECCCCe----EEEEEeCCCCceeeEEEecCCCeEEEeecCC-CCCeEEEEeCCCCCcEEEEeccCCCccEEEEeC
Confidence 78888874211 1122222234578999999666666665433 22 677777774322 3333345678999999
Q ss_pred CCCEEEEEEeecccccccEEEEEeccceee
Q 005315 556 TGRYVATAVTSVHEMENGFNIWSFNGKLLY 585 (702)
Q Consensus 556 dg~~l~t~s~~~~~~d~~v~iw~~~g~~l~ 585 (702)
+++.|+.+... .+.|...+++|....
T Consensus 487 ~~~~LYw~D~~----~~~I~~~~~dG~~r~ 512 (628)
T 4a0p_A 487 RLGKLFWADSD----LRRIESSDLSGANRI 512 (628)
T ss_dssp TTTEEEEEETT----TTEEEEEETTSCSCE
T ss_pred CCCEEEEEeCC----CCEEEEEeCCCCceE
Confidence 98888877663 467778888775433
No 484
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.62 E-value=0.067 Score=53.22 Aligned_cols=227 Identities=9% Similarity=-0.061 Sum_probs=117.1
Q ss_pred EEEEEeCCceEEeecCcCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC---CcEEee-c
Q 005315 217 YLATVHRQGAAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT---GKVMRD-F 291 (702)
Q Consensus 217 ~lat~~~~~i~iw~~~~~~~~~~~~-~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~---g~~~~~-~ 291 (702)
+|+++..+.|+..++. +....... ....+..++|++.+..|..+... .+.|..+++.+ +..... +
T Consensus 3 ~ll~~~~~~I~~i~~~-~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~---------~~~I~~~~~~g~~~~~~~~~~~ 72 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLD-RSEYTSLIPNLRNVVALDTEVASNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVI 72 (316)
T ss_dssp EEEEECBSSEEEEETT-SCCCEEEECSCSSEEEEEEETTTTEEEEEETT---------TTEEEEEEC--------CEEEE
T ss_pred EEEEECCCeEEEEECC-CcceEehhcCCCceEEEEEEeCCCEEEEEECC---------CCcEEEEECCCCCCCcccEEEE
Confidence 5777777788888888 44333333 23458899999977666555433 16899998754 122221 2
Q ss_pred cCCCcccccCCCCCCCCcccceEEEcCCCCcEEE-Eec-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEe
Q 005315 292 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA-KLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFV 369 (702)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la-~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 369 (702)
..... .+. .+++.+ .+..|. +-. .+.|.++++..................+++.|.+..|.+
T Consensus 73 ~~~~~--------~p~-----glavd~-~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~-- 136 (316)
T 1ijq_A 73 SRDIQ--------APD-----GLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW-- 136 (316)
T ss_dssp CSSCS--------CCC-----EEEEET-TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE--
T ss_pred eCCCC--------CcC-----EEEEee-cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEE--
Confidence 11100 111 456665 444343 333 889999998743221111112345788999997776654
Q ss_pred ecCCCCCCCcEEEEEecCCcc--eeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEE
Q 005315 370 PELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVL 447 (702)
Q Consensus 370 ~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 447 (702)
+..+...+|+.++..... .+....+ .....++|++++..|++...... .|+.++..+.....+
T Consensus 137 ---~d~~~~~~I~~~~~dG~~~~~~~~~~~--~~P~gla~d~~~~~lY~~D~~~~----------~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 137 ---TDWGTPAKIKKGGLNGVDIYSLVTENI--QWPNGITLDLLSGRLYWVDSKLH----------SISSIDVNGGNRKTI 201 (316)
T ss_dssp ---EECSSSCEEEEEETTSCCEEEEECSSC--SCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEE
T ss_pred ---EccCCCCeEEEEcCCCCCeEEEEECCC--CCceEEEEeccCCEEEEEECCCC----------eEEEEecCCCceEEE
Confidence 112223678887764322 1211111 12345678988888877654432 344443333222222
Q ss_pred -EecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 448 -ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 448 -~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
...........+++. +..++.+.... ..|..++..++
T Consensus 202 ~~~~~~~~~P~giav~--~~~ly~~d~~~--~~V~~~~~~~g 239 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVF--EDKVFWTDIIN--EAIFSANRLTG 239 (316)
T ss_dssp EECTTTTSSEEEEEEE--TTEEEEEETTT--TEEEEEETTTC
T ss_pred eecCCccCCcEEEEEE--CCEEEEEECCC--CeEEEEeCCCC
Confidence 111112345667763 34555544322 26777765433
No 485
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.57 E-value=0.027 Score=55.55 Aligned_cols=244 Identities=10% Similarity=0.078 Sum_probs=134.4
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec-C
Q 005315 251 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K 329 (702)
Q Consensus 251 fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~-d 329 (702)
|+++|.+|...... ..+.|...+. +|.....+.... +--+++ +|.+|+.+. .
T Consensus 21 ~~~~g~~iy~~n~~--------d~~~ly~~~~-dg~~~~~l~~~~-----------------~~~i~~-~g~~Iyy~~~~ 73 (302)
T 3s25_A 21 FCESDGEVFFSNTN--------DNGRLYAMNI-DGSNIHKLSNDT-----------------AMYINA-DKNYVYYVRNN 73 (302)
T ss_dssp EEEETTEEEEEEGG--------GTTEEEEEET-TSCSCEEEEEEE-----------------EEEEEE-CSSEEEEEEEC
T ss_pred EEEeCCEEEEEeCC--------CCceEEEEcC-CCCCCEEccCCc-----------------eeeEEE-cCCEEEEEECC
Confidence 45677777776532 0156666664 444344443221 235678 999998887 2
Q ss_pred --------------CeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcc--eee
Q 005315 330 --------------NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELR 393 (702)
Q Consensus 330 --------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~ 393 (702)
..|+..++..... ..+... ....|+|+++.|++... +.++...|+.+++.... .+.
T Consensus 74 ~~~~~~~~~~~~n~~~Iy~i~~dg~~~---~~l~~~--~~~~~s~~g~~Iy~~~~---~~~~~~~Iy~~~~dGs~~~~lt 145 (302)
T 3s25_A 74 NQKITSQTFFSYDRNSLCRIKRNGHGS---TVLDPD--PCIYASLIGNYIYYLHY---DTQTATSLYRIRIDGEEKKKIK 145 (302)
T ss_dssp C------CCSSCCSEEEEEEETTSCCC---EEEECS--CEEEEEEETTEEEEEEE---SSSSCEEEEEEETTSCCCEEEE
T ss_pred CCcccccceeccCCCeEEEEeCCCCcc---eEeecC--CccEEEEeCCEEEEEee---cCCCCceEEEEECCCCCeEEEe
Confidence 2455555554421 112111 23478889999987210 13566778888876433 222
Q ss_pred eeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEc
Q 005315 394 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 473 (702)
Q Consensus 394 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 473 (702)
... . ..++++|+.|+...... -.|+.+...+.....+ + .+... ..++|++.+|+....
T Consensus 146 ~~~---~----~~~~~~g~~iy~t~~g~----------~~Iy~~~l~g~~~~~l-~---~~~~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 146 NHY---L----FTCNTSDRYFYYNNPKN----------GQLYRYDTASQSEALF-Y---DCNCY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp SSC---C----CCSEEETTEEEEECTTT----------CCEEEEETTTTEEEEE-E---CSCEE-EEEEEETTEEEEEEG
T ss_pred CCC---c----eEeeEECCEEEEEeCCC----------ceEEEEECCCCCEEEE-e---CCCcc-ceeeecCCEEEEEEc
Confidence 111 1 34578899988776522 2577776655443333 3 23332 346699999998876
Q ss_pred CCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeecccCceeeeEE
Q 005315 474 DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEW 553 (702)
Q Consensus 474 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~i~~~~~ 553 (702)
... ..|..-++.... ...+....+ ..|+|+|++|+.+.... .+.|...+++......... ..+ ..+
T Consensus 204 ~~~-~~I~~~~ldG~~-------~~~Lt~~~~--~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG~~r~~l~~-~~~--~~i 269 (302)
T 3s25_A 204 NRD-NAIVHVNINNPN-------PVVLTEANI--EHYNVYGSLIFYQRGGD-NPALCVVKNDGTGFKELAK-GEF--CNI 269 (302)
T ss_dssp GGT-TEEEEECSSSCC-------CEECSCSCE--EEEEEETTEEEEEECSS-SCEEEEEETTSCCCEEEEE-SCE--EEE
T ss_pred CCC-cEEEEEECCCCC-------eEEEeCCCc--ceEEECCCEEEEEECCC-CcEEEEEECCCCccEEeeC-Ccc--ceE
Confidence 432 245555553322 122333333 45899999998775322 4678888887432221111 122 245
Q ss_pred CCCCCEEEEEEe
Q 005315 554 DPTGRYVATAVT 565 (702)
Q Consensus 554 spdg~~l~t~s~ 565 (702)
++.+.+|+....
T Consensus 270 ~i~~d~Iy~td~ 281 (302)
T 3s25_A 270 NVTSQYVYFTDF 281 (302)
T ss_dssp EECSSEEEEEET
T ss_pred EEeCCEEEEEEC
Confidence 667777777764
No 486
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.54 E-value=0.068 Score=55.79 Aligned_cols=239 Identities=7% Similarity=-0.036 Sum_probs=117.2
Q ss_pred eEEEcCCC---CcEEEEecCCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCC--CCcEEEEEecC
Q 005315 313 VFRWGGGK---DKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN--QPARVSLVQIP 387 (702)
Q Consensus 313 ~~~~s~~d---g~~la~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~--~~~~i~~~~~~ 387 (702)
.++|+| + +.++++-..+.|+.++..++.+... .........++++++|+++++ ...+ ....+..+...
T Consensus 143 gvavd~-~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVa-----d~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 143 RMMFDP-NSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVV-----DDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp EEEECT-TTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEE-----ECCSCTTSEEEEEECGG
T ss_pred eEEEcc-ccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEE-----cCCCCcccceEEEEECC
Confidence 578988 6 4443333358899999876654321 123445889999999994433 1111 12223333322
Q ss_pred Ccce-eeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCCceeEEEEeeCC
Q 005315 388 SKEE-LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEPKG 465 (702)
Q Consensus 388 ~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp~g 465 (702)
.... ..... .-.....++++|++..|++..... -.++.+....... ..+...+.......++|+|+|
T Consensus 216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~----------~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG 284 (433)
T 4hw6_A 216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHH----------AMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG 284 (433)
T ss_dssp GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTC----------SEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCC----------CEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence 1111 00100 111223356788433444433221 1456665432222 111111112233469999999
Q ss_pred cEEEEEEcCCCCCeEEEEEeecccCcC-ceEEE-EEcC-------------CCceeEEEE---------ccCCCEEEEEe
Q 005315 466 HRFAVIHGDSPRPDISFYSMRTAQHAG-RVSKL-TTLK-------------GKQANALFW---------SPSGRFIVLAG 521 (702)
Q Consensus 466 ~~l~~~~~d~~~~~v~i~d~~~~~~~~-~~~~~-~~~~-------------~~~v~~~~~---------spdg~~l~~~~ 521 (702)
++|+++.... ..|..+++....... ....+ .... -.....+++ .++|.++++-.
T Consensus 285 ~~LYvad~~~--~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~ 362 (433)
T 4hw6_A 285 DWAYIIYNGK--HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDR 362 (433)
T ss_dssp SEEEEEETTT--TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEET
T ss_pred CEEEEEeCCC--CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEEC
Confidence 9777776543 278887765321110 00111 1111 012456888 66666555544
Q ss_pred ccCCCceEEEEECCCcceeeecc-------------------cCceeeeEECCCCCEEEEEEeecccccccEEEEEe
Q 005315 522 LKGFNGQLEFYNVDELETMATAE-------------------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 579 (702)
Q Consensus 522 ~~~~dg~v~i~d~~~~~~~~~~~-------------------~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 579 (702)
. ++.|+.++.. +.+..... -.....++++|....|+.+... .+.|+.+++
T Consensus 363 ~---n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~----n~rIr~i~~ 431 (433)
T 4hw6_A 363 D---SHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD----NHRVRKIAP 431 (433)
T ss_dssp T---TTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG----GTEEEEEEE
T ss_pred C---CCEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC----CCEEEEEec
Confidence 3 6788888864 43322110 1225578888433344444431 566666654
No 487
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.54 E-value=0.00012 Score=56.33 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=52.8
Q ss_pred CcEEEECCCCC-------CCh---hhHHHhHhcccc-ccEEeecCCCCCceeeEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 005315 59 GNIIVVDNLPV-------VPK---EKFEKLEGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 127 (702)
Q Consensus 59 ~~~~~v~~lp~-------~~~---~~~~~l~~~~~~-~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 127 (702)
+.+|+|..++. .++ ..+.+.|..+|+ ..++++.|+ +||+|.+.+.|.+|++ |||++++++
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 45888888762 333 235556667776 588898875 9999999999999998 999999988
Q ss_pred eEEEEEec
Q 005315 128 HIFAVNMF 135 (702)
Q Consensus 128 h~~~v~~~ 135 (702)
.++|+..
T Consensus 86 -~L~V~~k 92 (95)
T 1ufw_A 86 -AVKISGP 92 (95)
T ss_dssp -EEEEECC
T ss_pred -EEEEecc
Confidence 8888764
No 488
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.52 E-value=0.048 Score=59.38 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=46.3
Q ss_pred eEEEEEeecccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeeeccc-Cce--eeeEEC
Q 005315 479 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMA--TDVEWD 554 (702)
Q Consensus 479 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~~~~-~~i--~~~~~s 554 (702)
.|.-||+.+++. +-+.. ..+...-.....|..+++++. ||.|+.||.++++.+.+... ..+ +-+.|.
T Consensus 467 ~l~A~D~~tG~~------~W~~~~~~~~~~g~~~tagglvf~g~~---dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~ 537 (582)
T 1flg_A 467 SLRAMDPVSGKV------VWEHKEHLPLWAGVLATAGNLVFTGTG---DGYFKAFDAKSGKELWKFQTGSGIVSPPITWE 537 (582)
T ss_dssp EEEEECTTTCCE------EEEEEESSCCCSCCEEETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred eEEEEECCCCCE------EEEecCCCCCcccceEeCCCEEEEECC---CCcEEEEECCCCCEEEEecCCCCcccCceEEE
Confidence 577777765542 21111 112222222334667888877 99999999999999876432 222 236777
Q ss_pred CCCC-EEEEEEe
Q 005315 555 PTGR-YVATAVT 565 (702)
Q Consensus 555 pdg~-~l~t~s~ 565 (702)
.+|+ ||++.+.
T Consensus 538 ~~G~qYv~~~~G 549 (582)
T 1flg_A 538 QDGEQYLGVTVG 549 (582)
T ss_dssp ETTEEEEEEEEC
T ss_pred ECCEEEEEEEcc
Confidence 8888 5554444
No 489
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.50 E-value=0.079 Score=54.66 Aligned_cols=224 Identities=6% Similarity=-0.087 Sum_probs=117.1
Q ss_pred EEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcc----cccceeec
Q 005315 276 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFT----LIDKKSLK 349 (702)
Q Consensus 276 ~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~----~~~~~~~~ 349 (702)
.|+..++................ .+.|.+ .+..|.... .+.|..+++.... ........
T Consensus 93 ~I~~i~l~~~~~~~~~~~~~~~~--------------~l~~d~-~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLIPNLRNVV--------------ALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEECTTSCSCEEEECSCSCEE--------------EEEEET-TTTEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred eeEEEccCCcceeEeccccCcce--------------EEeeee-ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence 58888876554443333333333 688988 666555554 7889888876522 11111112
Q ss_pred cCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEccccccccccc
Q 005315 350 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 429 (702)
Q Consensus 350 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 429 (702)
......+++.+.+..|.+. .....+|..++.............-.....++..|.+.+|+.......
T Consensus 158 ~~~p~glavD~~~~~lY~~------d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~------- 224 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWT------DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------- 224 (400)
T ss_dssp CSCEEEEEEETTTTEEEEE------ETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSS-------
T ss_pred CCCcccEEEEecCCceEEE------ECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCC-------
Confidence 3356788888855555441 223346777776543321111111112334567787777766543211
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCC--CceeE
Q 005315 430 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANA 507 (702)
Q Consensus 430 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~ 507 (702)
-.|+.+...+.....+ +...-.....++++|++..|+.+.... ..|..+++..... ..+..... .....
T Consensus 225 --~~I~~~~~dG~~~~~~-~~~~l~~P~glavd~~~~~lY~aD~~~--~~I~~~d~dG~~~----~~~~~~~~~l~~P~g 295 (400)
T 3p5b_L 225 --AKIKKGGLNGVDIYSL-VTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNR----KTILEDEKRLAHPFS 295 (400)
T ss_dssp --CCEEEEETTSCSCEEE-ECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCCC----EEEEECSSTTSSEEE
T ss_pred --CEEEEEeCCCCccEEE-EECCCCceEEEEEEeCCCEEEEEECCC--CEEEEEeCCCCcc----EEEEeCCCCCCCCEE
Confidence 1345554444332222 212235678899999888888876533 3788888753221 12322211 12344
Q ss_pred EEEccCCCEEEEEeccCCCceEEEEECCCccee
Q 005315 508 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 540 (702)
Q Consensus 508 ~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~ 540 (702)
+++ ++..|+.+..+ .+.|..++..+++.+
T Consensus 296 l~v--~~~~lywtd~~--~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 296 LAV--FEDKVFWTDII--NEAIFSANRLTGSDV 324 (400)
T ss_dssp EEE--ETTEEEEEESS--SCSEEEEESSSCCCC
T ss_pred EEE--eCCEEEEecCC--CCeEEEEEcCCCCce
Confidence 555 45555555432 577888886655443
No 490
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=0.024 Score=59.27 Aligned_cols=141 Identities=8% Similarity=0.030 Sum_probs=80.3
Q ss_pred ccceEEECC-CCcEEEEEeC-CceEEeecCcCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005315 205 TESFVQWSP-LGTYLATVHR-QGAAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 281 (702)
Q Consensus 205 ~v~~v~~Sp-dg~~lat~~~-~~i~iw~~~~~~~~~~~~~-~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd 281 (702)
.-.+++|+| ++..|..+.. ..|..++.. +........ ......|+|+++|++|+.+...... ....+.+++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~-----~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-KEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNN-----DRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETT-TTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCT-----TSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECC-CCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCc-----ccceEEEEe
Confidence 456899998 4556666655 348888887 433322222 3348899999999977666543100 002344444
Q ss_pred ccCCcEE--eeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceee-ccCCeeEE
Q 005315 282 VRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSL-KVENVMDF 356 (702)
Q Consensus 282 ~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~-~~~~v~~~ 356 (702)
..+... +.+.....+. .++++| ++.+|..+. ++.|..|+..++........ .......+
T Consensus 212 -~~g~~~~~~~l~~~~~p~--------------giavdp-~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gi 275 (430)
T 3tc9_A 212 -RESGFKVITELTKGQNCN--------------GAETHP-INGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHI 275 (430)
T ss_dssp -GGGTSCSEEEEEECSSCC--------------CEEECT-TTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEE
T ss_pred -CCCceeeeeeeccCCCce--------------EEEEeC-CCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeE
Confidence 344322 2221111111 467888 655444443 88999999876543111111 11236789
Q ss_pred EeCCCCCeEEE
Q 005315 357 SWSPTDPIISL 367 (702)
Q Consensus 357 ~~sp~~~~la~ 367 (702)
+|+|+|++|.+
T Consensus 276 a~~pdG~~lyv 286 (430)
T 3tc9_A 276 QFHPSGNYAYI 286 (430)
T ss_dssp EECTTSSEEEE
T ss_pred EEcCCCCEEEE
Confidence 99999996554
No 491
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.31 E-value=0.3 Score=53.44 Aligned_cols=397 Identities=10% Similarity=0.009 Sum_probs=185.8
Q ss_pred ccCCCCCceEEEEeCCceEEEecCCCCCCCcccccCCCcccceEEECCCCcEEEEEeCC-c-eEEeecCcCcceeee-ec
Q 005315 166 LTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ-G-AAVWGGANTFNRLMR-YA 242 (702)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~-~-i~iw~~~~~~~~~~~-~~ 242 (702)
-+++.....|+.-...+.+..++..........+.........+++.+.+..|+.+... + |.+.+..++...... -.
T Consensus 46 d~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~ 125 (619)
T 3s94_A 46 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE 125 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred EEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCC
Confidence 34454555555554444444444421111122333333456789999977766666543 3 778888844332222 12
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccc-eEEEcCCCC
Q 005315 243 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGKD 321 (702)
Q Consensus 243 ~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~s~~dg 321 (702)
......|++.|.+.+|....... .+.|...++ +|.....+.... +.|| .+++++ ++
T Consensus 126 l~~P~~Iavdp~~g~ly~tD~g~--------~~~I~r~~~-dG~~~~~l~~~~-------------~~~P~Glald~-~~ 182 (619)
T 3s94_A 126 LDQPRAIALDPSSGFMYWTDWGE--------VPKIERAGM-DGSSRFIIINSE-------------IYWPNGLTLDY-EE 182 (619)
T ss_dssp CSCCCCEEEETTTTEEEEEECSS--------SCEEEEEET-TSCSCEEEECSS-------------CSSEEEEEEET-TT
T ss_pred CCCCceEEEecCCCeEEEeccCC--------CCEEEEEEC-CCCceEEEEeCC-------------CCCCcEEEEEc-cC
Confidence 33477899999866666554320 146666665 444333332111 1122 578888 77
Q ss_pred cEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeee-----
Q 005315 322 KYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ----- 394 (702)
Q Consensus 322 ~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~----- 394 (702)
+.|..+. .+.|..+++..................+++..+ .|.+ + .-....|+.++..+.+....
T Consensus 183 ~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~-t-----d~~~~~V~~~d~~tg~~~~~i~~~~ 254 (619)
T 3s94_A 183 QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYW-T-----DWSTHSILACNKYTGEGLREIHSDI 254 (619)
T ss_dssp TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEE-E-----CTTTCSEEEEESSSCCCCEECCSCC
T ss_pred CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEE-e-----cCCCCEEEEEECCCCcccEEEecCC
Confidence 7665555 778888887643221111111222345555544 3322 1 22333455555433321100
Q ss_pred -----eeec-c------ccc-------c-eeE-EccC-CCEEEEEEccccc--cccccc---ccEEEE-------EEecC
Q 005315 395 -----KNLF-S------VSD-------C-KMY-WQSS-GDYLAVKVDRYTK--TKKSTY---TGFELF-------RIKER 440 (702)
Q Consensus 395 -----~~~~-~------~~~-------~-~~~-~s~~-g~~l~~~~~~~~~--~~~~~~---~~~~l~-------~l~~~ 440 (702)
..++ . ... | .+. .+|. +.+-|.+...... .++... ..+.++ .+...
T Consensus 255 ~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~ 334 (619)
T 3s94_A 255 FSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLD 334 (619)
T ss_dssp CCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESS
T ss_pred CCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecC
Confidence 0000 0 000 1 111 1222 1233322221110 000000 111121 11111
Q ss_pred CcceeEEEec-CCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCcCceEEEEEcCCCceeEEEEccCCCEEEE
Q 005315 441 DIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVL 519 (702)
Q Consensus 441 ~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 519 (702)
......+.++ ..-..+.+++|.+.+..|+.+.... ..|..+++..... ..+....-.....+++.+.++.|+.
T Consensus 335 ~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~--~~I~r~~~~g~~~----~~v~~~~~~~p~GlAvD~~~~~lY~ 408 (619)
T 3s94_A 335 TPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEV--RAIRRSFIDGSGS----QFVVTAQIAHPDGIAVDWVARNLYW 408 (619)
T ss_dssp STTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSC----EEEECSSCSCCCEEEEETTTTEEEE
T ss_pred CCccceeEEeccccCccEEEEEEcCCCeEEEEeCCC--CeEEEEEcCCCcc----EEEEECCCCCcCceEEecccCcEEE
Confidence 1100111111 1123567889998766777665432 2677777643221 1222222235678999987777777
Q ss_pred EeccCCCceEEEEECCCcc--eeeecccCceeeeEECCCCCEEEEEEeecccccccEEEEEeccceeeee---ccccEee
Q 005315 520 AGLKGFNGQLEFYNVDELE--TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LKDHFFQ 594 (702)
Q Consensus 520 ~~~~~~dg~v~i~d~~~~~--~~~~~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~l~~~---~~~~i~~ 594 (702)
+..+ .+.|.+.+++... .+....-....+++++|...+|..+.... ...|...+.+|...... .......
T Consensus 409 tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~---~~~I~r~~~dG~~~~~l~~~~l~~P~G 483 (619)
T 3s94_A 409 TDTG--TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE---IPKIERAALDGSDRVVLVNTSLGWPNG 483 (619)
T ss_dssp EETT--TTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred EeCC--CCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCC---CCEEEEEccCCCccEEEEeCCCCCCee
Confidence 6542 6889999988542 22223335678999999755665554310 23455555666533222 2345566
Q ss_pred EEEeeCCCCC
Q 005315 595 FLWRPRPPSF 604 (702)
Q Consensus 595 ~~w~p~~~~l 604 (702)
++..++...|
T Consensus 484 lalD~~~~~L 493 (619)
T 3s94_A 484 LALDYDEGKI 493 (619)
T ss_dssp EEEETTTTEE
T ss_pred eEEcccCCEE
Confidence 6666654433
No 492
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.30 E-value=0.039 Score=59.96 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=45.6
Q ss_pred CceEEEEECCCcceeeeccc-CceeeeEECCCCCEEEEEEeecccccccEEEEEec-cceeeeeccc-cE--eeEEEeeC
Q 005315 526 NGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD-HF--FQFLWRPR 600 (702)
Q Consensus 526 dg~v~i~d~~~~~~~~~~~~-~~i~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~l~~~~~~-~i--~~~~w~p~ 600 (702)
+|.|..||+.+++.+-+... ..+........|..|++++. |+.++.||.. |+.+.+.... .+ ..+.+.++
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~-----dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~ 517 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATL-----DGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFK 517 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT-----TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcC-----CCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEEC
Confidence 58899999999988765332 23333333444666777777 8999999975 6666554321 11 12334566
Q ss_pred CCCC
Q 005315 601 PPSF 604 (702)
Q Consensus 601 ~~~l 604 (702)
++.+
T Consensus 518 G~~y 521 (571)
T 2ad6_A 518 GKQY 521 (571)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 6533
No 493
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.27 E-value=0.15 Score=49.67 Aligned_cols=274 Identities=9% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCccEEEEEEccCCcEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEecCCeEEEEecCCcccccceeeccC
Q 005315 272 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVE 351 (702)
Q Consensus 272 ~~~~~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~d~~i~v~d~~~~~~~~~~~~~~~ 351 (702)
+....|.|.|+.++.....-.-..+.. -.+| ..+.||.-...+++|+++++...+..... .+
T Consensus 46 ~~~~~VvIiDl~n~~~~~Rrpi~AdsA----------------IMnP-~~~ViALrag~~LQiFnletK~klks~~~-~e 107 (365)
T 2xzh_A 46 GEQAQVVIIDMNDPSNPIRRPISADSA----------------IMNP-ASKVIALKAGKTLQIFNIEMKSKMKAHTM-TD 107 (365)
T ss_dssp TTEEEEEEEETTSTTSCEEEECCCSEE----------------EECS-SSSEEEEEETTEEEEEETTTTEEEEEEEC-SS
T ss_pred CCCCEEEEEECCCCCCcccccccccee----------------eeCC-CccEEEEecCCeEEEechHHhhhhcceec-CC
Q ss_pred CeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEe---cCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccc
Q 005315 352 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ---IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 428 (702)
Q Consensus 352 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 428 (702)
.|.--.|-....+-.+ .+..+.-|.++ .|.+-.-+..++.....+...-+++.++++...-..... ..
T Consensus 108 ~VvfWkWis~~~L~lV-------T~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~--~v 178 (365)
T 2xzh_A 108 DVTFWKWISLNTVALV-------TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN--RV 178 (365)
T ss_dssp CEEEEEECSSSEEEEE-------ESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETT--EE
T ss_pred ccEEEEecCCCeEEEE-------cCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCC--cc
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceeEEEEeeC---CcEEEEEEcCCCCCeEEEEEeecc-----cCcCceEEEEEc
Q 005315 429 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK---GHRFAVIHGDSPRPDISFYSMRTA-----QHAGRVSKLTTL 500 (702)
Q Consensus 429 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~---g~~l~~~~~d~~~~~v~i~d~~~~-----~~~~~~~~~~~~ 500 (702)
.+.++||....+ ....+.+|......+...-+ .+.|+++........++|.++... ....+...+.--
T Consensus 179 ~G~mQLYS~er~----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fp 254 (365)
T 2xzh_A 179 VGAMQLYSVDRK----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 254 (365)
T ss_dssp EEEEEEEETTTT----EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCC
T ss_pred ceeEEEEeeccc----ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCC
Q ss_pred CCCc---eeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee--cccCceeeeEECCCCCEEEEEEeecccccccEE
Q 005315 501 KGKQ---ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFN 575 (702)
Q Consensus 501 ~~~~---v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~--~~~~~i~~~~~spdg~~l~t~s~~~~~~d~~v~ 575 (702)
+... --++..|+.-..+++.+. -|.|++||+.++.++.. .....|...+-+..+.=++.... .|.|.
T Consensus 255 pea~~DFPVamqvs~kygviyviTK---~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr-----~GqVl 326 (365)
T 2xzh_A 255 PEAQNDFPVAMQISEKHDVVFLITK---YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNR-----KGQVL 326 (365)
T ss_dssp TTCTTCCEEEEEEETTTTEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEET-----TCEEE
T ss_pred ccccCCceEEEEecccCCEEEEEeC---CcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcC-----CCEEE
Q ss_pred EEEecccee
Q 005315 576 IWSFNGKLL 584 (702)
Q Consensus 576 iw~~~g~~l 584 (702)
--.++...+
T Consensus 327 ~v~v~~~~i 335 (365)
T 2xzh_A 327 SVCVEEENI 335 (365)
T ss_dssp EEEECTTTH
T ss_pred EEEECcccE
No 494
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.25 E-value=0.083 Score=53.45 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=43.4
Q ss_pred cceEEECCCCcEEEEEeCCceEEeecCcCcceeeeec-----CCCeeEEEecCC---CCEEEEEcCCCCCCCcCCCccEE
Q 005315 206 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA-----HPQVKLIDFSPG---EKYLVTYSSHEPSNPRDANRVVI 277 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~-----~~~v~~i~fSpd---g~~l~t~s~d~~~~~~~~~~~~i 277 (702)
-..++|.|+|+++++-....|.+++ .+....+..+. ......|+|+|+ +.+|..+...... .....|
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~----~~~~~v 107 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG----GLRNQV 107 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT----SSEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC----CCccEE
Confidence 4589999999976665443377777 42333333222 235889999998 5544443321000 111467
Q ss_pred EEEEccCC
Q 005315 278 NIFDVRTG 285 (702)
Q Consensus 278 ~vwd~~~g 285 (702)
..|+...+
T Consensus 108 ~r~~~~~~ 115 (352)
T 2ism_A 108 VRLRHLGE 115 (352)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 78887543
No 495
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.20 E-value=0.46 Score=53.42 Aligned_cols=230 Identities=8% Similarity=-0.103 Sum_probs=113.1
Q ss_pred EEEEEeCCceEEeecCcCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----cEEeecc
Q 005315 217 YLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFK 292 (702)
Q Consensus 217 ~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g----~~~~~~~ 292 (702)
+|+.+....|+..++.+............+..|+|.+.+..|...... .+.|+.+++... .....+.
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~---------~~~I~~~~l~g~~~~~~~~~vi~ 467 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVIS 467 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT---------TTEEEEEEC--------CEEEEC
T ss_pred ccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeecc---------ceeEEEEeccCCCCCcceeEEEe
Confidence 666666667877777622222222234458899999966655544433 167888887532 1111121
Q ss_pred CCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEEee
Q 005315 293 GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 370 (702)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~ 370 (702)
... ..+. .+++.+ .++.|.... .+.|.+.++..................|++.|.+..|.+
T Consensus 468 ~~l--------~~P~-----GLAvD~-~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYw--- 530 (791)
T 3m0c_C 468 RDI--------QAPD-----GLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW--- 530 (791)
T ss_dssp SSC--------SCCC-----EEEEET-TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE---
T ss_pred cCC--------CCcc-----eeeeee-cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEE---
Confidence 111 1112 355555 554444333 789999998744321111123345789999998766654
Q ss_pred cCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005315 371 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 450 (702)
Q Consensus 371 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 450 (702)
.-.+...+|+.+++............-.....++.++.+..|+++..... .|+.+...+.....+.-.
T Consensus 531 --tD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~----------~I~~~d~dG~~~~~v~~~ 598 (791)
T 3m0c_C 531 --TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH----------SISSIDVNGGNRKTILED 598 (791)
T ss_dssp --EECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEEEEC
T ss_pred --ecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC----------cEEEEecCCCceEEEecC
Confidence 11223357888776543321111101112334566777777777643322 344444433332222210
Q ss_pred -CCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 451 -NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 451 -~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
..-....+|++ .+.+|+.+.... ..|...+..++
T Consensus 599 ~~~l~~P~glav--~~~~lYwtD~~~--~~I~~~dk~tG 633 (791)
T 3m0c_C 599 EKRLAHPFSLAV--FEDKVFWTDIIN--EAIFSANRLTG 633 (791)
T ss_dssp TTTTSSEEEEEE--ETTEEEEEETTT--TEEEEEETTTC
T ss_pred CCccCCCCEEEE--eCCEEEEEECCC--CEEEEEeCCCC
Confidence 11122334444 455666655432 15665554333
No 496
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.18 E-value=0.19 Score=54.69 Aligned_cols=134 Identities=12% Similarity=0.088 Sum_probs=71.1
Q ss_pred eEEECCCCcE----EEEEeCCc-eEEeecCcCcceeeeecCCC---eeEEEecC---CCCEEEEEcCCCCCCCcCCCccE
Q 005315 208 FVQWSPLGTY----LATVHRQG-AAVWGGANTFNRLMRYAHPQ---VKLIDFSP---GEKYLVTYSSHEPSNPRDANRVV 276 (702)
Q Consensus 208 ~v~~Spdg~~----lat~~~~~-i~iw~~~~~~~~~~~~~~~~---v~~i~fSp---dg~~l~t~s~d~~~~~~~~~~~~ 276 (702)
.++.+|.+.. |++++.++ +..+|.. +++.+-+..... -..+.-+| ++. |++++... ..+..+.
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~-TG~~~W~~~~~~~~~~~~~~ssP~v~~g~-V~vg~~g~----e~g~~g~ 183 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAE-TGETVWKVENSDIKVGSTLTIAPYVVKDK-VIIGSSGA----ELGVRGY 183 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETT-TCCEEEEEECCCGGGTCBCCSCCEEETTE-EEECCBCG----GGTCCCE
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECC-CCCEEEeecCCCCCccceeecCCEEECCE-EEEEeccc----ccCCCCe
Confidence 3566554433 66676666 7788888 777665543221 00111122 444 44444200 0001178
Q ss_pred EEEEEccCCcEEeeccCCCccccc--C----CCC-------------------CCCCcccceEEEcCCCCcEEEEec-C-
Q 005315 277 INIFDVRTGKVMRDFKGSADEFAV--G----GTG-------------------GVAGVSWPVFRWGGGKDKYFAKLG-K- 329 (702)
Q Consensus 277 i~vwd~~~g~~~~~~~~~~~~~~~--~----~~~-------------------~~~~~~w~~~~~s~~dg~~la~~~-d- 329 (702)
|+.+|..+|+.+-.+......... + ... .-.+..|..+++.+ ....+..+. +
T Consensus 184 v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~ 262 (599)
T 1w6s_A 184 LTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNP 262 (599)
T ss_dssp EEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCC
T ss_pred EEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCC
Confidence 999999999988776543221000 0 000 00112354456666 666555554 3
Q ss_pred ---------------CeEEEEecCCcccccceee
Q 005315 330 ---------------NMISVYETESFTLIDKKSL 348 (702)
Q Consensus 330 ---------------~~i~v~d~~~~~~~~~~~~ 348 (702)
+.|..+|..+++.+.....
T Consensus 263 ~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 263 APWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp SCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred ccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 3788999999988766544
No 497
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.18 E-value=0.16 Score=51.25 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=31.7
Q ss_pred cceEEECCCCcEEEEEeCCceEEeecCcCcceeeeec-----CCCeeEEEecCC
Q 005315 206 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA-----HPQVKLIDFSPG 254 (702)
Q Consensus 206 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~-----~~~v~~i~fSpd 254 (702)
-..++|.|+|+++++-....|.+++..+. ..+..+. ..+...|+|+|+
T Consensus 31 P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pd 83 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPE 83 (354)
T ss_dssp EEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTT
T ss_pred CeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCC
Confidence 45789999999766655534877775522 3333221 235889999998
No 498
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.16 E-value=0.29 Score=50.41 Aligned_cols=230 Identities=7% Similarity=-0.103 Sum_probs=116.4
Q ss_pred cEEEEEeCCceEEeecCcCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc----EEee
Q 005315 216 TYLATVHRQGAAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK----VMRD 290 (702)
Q Consensus 216 ~~lat~~~~~i~iw~~~~~~~~~~~~-~~~~v~~i~fSpdg~~l~t~s~d~~~~~~~~~~~~i~vwd~~~g~----~~~~ 290 (702)
.+|+.+....|+..++. +....... ....+..++|++.+..|...... .+.|..+++.... ....
T Consensus 84 ~~ll~~~~~~I~~i~l~-~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~---------~~~I~~~~~~g~~~~~~~~~~ 153 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLD-RSEYTSLIPNLRNVVALDTEVASNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTV 153 (400)
T ss_dssp CEEEEEETTEEEEECTT-SCSCEEEECSCSCEEEEEEETTTTEEEEEETT---------TTEEEEEEC------CCCEEE
T ss_pred ceeEEeccceeEEEccC-CcceeEeccccCcceEEeeeeccCceEEEecC---------CCeEEEEEcccCCCCCcceEE
Confidence 47777777778888887 33322222 33458899999977766655433 1678888875421 1111
Q ss_pred ccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEe-c-CCeEEEEecCCcccccceeeccCCeeEEEeCCCCCeEEEE
Q 005315 291 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLF 368 (702)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~-~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~ 368 (702)
+..... .+. .+++.+ .+..|... . .+.|.+.++..................+++.|.+..|.+
T Consensus 154 ~~~~~~--------~p~-----glavD~-~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~- 218 (400)
T 3p5b_L 154 ISRDIQ--------APD-----GLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW- 218 (400)
T ss_dssp ECSSCS--------CEE-----EEEEET-TTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEE-
T ss_pred EeCCCC--------Ccc-----cEEEEe-cCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEE-
Confidence 111110 111 345544 34433333 3 788999888754322111123344788999997776654
Q ss_pred eecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE
Q 005315 369 VPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE 448 (702)
Q Consensus 369 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 448 (702)
.......+|+.+++............-.....+++++++..|+++..... .|+.++..+.....+.
T Consensus 219 ----td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~----------~I~~~d~dG~~~~~~~ 284 (400)
T 3p5b_L 219 ----TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH----------SISSIDVNGGNRKTIL 284 (400)
T ss_dssp ----EECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCCCEEEE
T ss_pred ----EeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC----------EEEEEeCCCCccEEEE
Confidence 11222357777776543211111101122345678888888877654322 3444443333222221
Q ss_pred e-cCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecc
Q 005315 449 L-DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 488 (702)
Q Consensus 449 l-~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 488 (702)
- ...-.....++. ++..++.+.... ..|..++..++
T Consensus 285 ~~~~~l~~P~gl~v--~~~~lywtd~~~--~~V~~~~~~~G 321 (400)
T 3p5b_L 285 EDEKRLAHPFSLAV--FEDKVFWTDIIN--EAIFSANRLTG 321 (400)
T ss_dssp ECSSTTSSEEEEEE--ETTEEEEEESSS--CSEEEEESSSC
T ss_pred eCCCCCCCCEEEEE--eCCEEEEecCCC--CeEEEEEcCCC
Confidence 1 111233445555 444555544332 16776765443
No 499
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.16 E-value=0.2 Score=49.66 Aligned_cols=234 Identities=6% Similarity=-0.112 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCCCcCCCccEEEEEEccCC--cEEeeccCCCcccccCCCCCCCCcccceEEEcCCCCcEEEEec--CCeE
Q 005315 257 YLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMI 332 (702)
Q Consensus 257 ~l~t~s~d~~~~~~~~~~~~i~vwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~s~~dg~~la~~~--d~~i 332 (702)
+|+.+... .|+..++... .....+......+ .+.|.+ .+..|.... .+.|
T Consensus 6 ~ll~~~~~-----------~I~~i~l~~~~~~~~~~~~~~~~~~--------------~ld~d~-~~~~lyw~D~~~~~I 59 (318)
T 3sov_A 6 LLLYANRR-----------DLRLVDATNGKENATIVVGGLEDAA--------------AVDFVF-SHGLIYWSDVSEEAI 59 (318)
T ss_dssp EEEEECEE-----------EEEEEETTCTTSCCEEEEEEEEEEE--------------EEEEEG-GGTEEEEEETTTTEE
T ss_pred EEEEEccC-----------eEEEEECCCCceEEEEEecCCCccE--------------EEEEEe-CCCEEEEEECCCCcE
Q ss_pred EEEecCCccc-ccceeeccCCeeEEEeCCCCCeEEEEeecCCCCCCCcEEEEEecCCcceeeeeeecccccceeEEccCC
Q 005315 333 SVYETESFTL-IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG 411 (702)
Q Consensus 333 ~v~d~~~~~~-~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 411 (702)
..+++..... .............+++.+.+..|.+. .....+|..++...................++..|.+
T Consensus 60 ~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~------d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~ 133 (318)
T 3sov_A 60 KRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWT------DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 133 (318)
T ss_dssp EEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEE------ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG
T ss_pred EEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEE------ECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC
Q ss_pred CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceeEEEEeeCCcEEEEEEcCCCCCeEEEEEeecccCc
Q 005315 412 DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA 491 (702)
Q Consensus 412 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~ 491 (702)
.+|+....... -.|+.+...+.....+.- ..-...+.++|+|++..|+.+..... .|..+++......
T Consensus 134 g~ly~td~~~~---------~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~~--~I~~~d~dG~~~~ 201 (318)
T 3sov_A 134 GFMYWTDWGEV---------PKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLN--FIHKSNLDGTNRQ 201 (318)
T ss_dssp TEEEEEECSSS---------CEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTT--EEEEEETTSCSCE
T ss_pred CEEEEEecCCC---------CEEEEEEcCCCCeEEEEE-CCCCCccEEEEeccCCEEEEEECCCC--EEEEEcCCCCceE
Q ss_pred CceEEEEEcCCCceeEEEEccCCCEEEEEeccCCCceEEEEECCCcceeee
Q 005315 492 GRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 542 (702)
Q Consensus 492 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~dg~v~i~d~~~~~~~~~ 542 (702)
.+..-.......+++. .+..+.+-.. .+.|..++..+++....
T Consensus 202 ----~~~~~~~~~P~glav~-~~~lywtd~~---~~~V~~~~~~~G~~~~~ 244 (318)
T 3sov_A 202 ----AVVKGSLPHPFALTLF-EDILYWTDWS---THSILACNKYTGEGLRE 244 (318)
T ss_dssp ----EEECSCCSCEEEEEEE-TTEEEEEETT---TTEEEEEETTTCCSCEE
T ss_pred ----EEecCCCCCceEEEEe-CCEEEEEecC---CCeEEEEECCCCCceEE
No 500
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.15 E-value=0.075 Score=52.72 Aligned_cols=184 Identities=11% Similarity=0.229 Sum_probs=105.9
Q ss_pred cEEEEEecCCcceeeeeeeccccccee--EEccCCCE--EEEEEccc--ccccccccccEEEEEEecCCcceeEEE----
Q 005315 379 ARVSLVQIPSKEELRQKNLFSVSDCKM--YWQSSGDY--LAVKVDRY--TKTKKSTYTGFELFRIKERDIPIEVLE---- 448 (702)
Q Consensus 379 ~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~g~~--l~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~---- 448 (702)
.-+.+|++ .++.+..........+.+ -+.-.|+. +++.+.+. . ..+.+|.++....++..+.
T Consensus 50 ~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~-------n~l~vf~iDp~~~~l~~i~~~~~ 121 (355)
T 3amr_A 50 SGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGK-------NTIEIYAIDGKNGTLQSMTDPDH 121 (355)
T ss_dssp TEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTC-------CEEEEEEECTTTCCEEECSCTTS
T ss_pred CCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCC-------CeEEEEEECCCCCceeecccccc
Confidence 45667777 444444332211122212 23334443 55655543 2 2378898863333332221
Q ss_pred -ecCCCCceeEEEE--eeC-CcEEEEE-EcCCCCCeEEEEEeec-ccCcCceEEEEEcC-CCceeEEEEccCCCEEEEEe
Q 005315 449 -LDNKNDKIIAFAW--EPK-GHRFAVI-HGDSPRPDISFYSMRT-AQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAG 521 (702)
Q Consensus 449 -l~~h~~~v~~~~~--sp~-g~~l~~~-~~d~~~~~v~i~d~~~-~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~ 521 (702)
+......+..+|+ +|. +.+.++. ..++ .+..|++.. +.+....+.++++. +.++..+...+....|+++-
T Consensus 122 pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G---~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~e 198 (355)
T 3amr_A 122 PIATAINEVYGFTLYHSQKTGKYYAMVTGKEG---EFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAE 198 (355)
T ss_dssp CEECCCSSCCCEEEEECTTTCCEEEEEECSSS---EEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred CcCCCCCCeeEEEEEecCCCCcEEEEEECCCC---eEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEec
Confidence 1011145556777 774 5544444 4455 899999864 22223345677776 44788899999989999998
Q ss_pred ccCCCceEEEEECC-----Ccceeeeccc----CceeeeEE--CCCCC-EEEEEEeecccccccEEEEEec
Q 005315 522 LKGFNGQLEFYNVD-----ELETMATAEH----FMATDVEW--DPTGR-YVATAVTSVHEMENGFNIWSFN 580 (702)
Q Consensus 522 ~~~~dg~v~i~d~~-----~~~~~~~~~~----~~i~~~~~--spdg~-~l~t~s~~~~~~d~~v~iw~~~ 580 (702)
. +..|..|+.+ +.+++..... ..+..+++ .++|+ ||++++.. ++++.+|+..
T Consensus 199 E---d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG----~~s~~Vydr~ 262 (355)
T 3amr_A 199 E---DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG----NSSYAIYDRQ 262 (355)
T ss_dssp T---TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG----GTEEEEEESS
T ss_pred c---cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC----CCEEEEEECC
Confidence 7 6567777755 3445543221 35666777 67777 78888753 7899999986
Done!