BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005316
(702 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 133/340 (39%), Gaps = 106/340 (31%)
Query: 423 DVLKALSQALKKTEEAYLDIADRMLMENP---------ELALMGSCVLVMLMKGEDVYVM 473
DV +AL A K+ + DI+ + +P +A G+ V + G D++V
Sbjct: 160 DVKEALINAFKRLDN---DISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVA 216
Query: 474 NVGDSRAVLAQKAEPDYWLGKFRQDLERINEETLHDLEGFDGDKPCISDLNAFQLSVDHS 533
N GDSRA+L + E W +A LS DH+
Sbjct: 217 NTGDSRAMLGVQEEDGSW--------------------------------SAVTLSNDHN 244
Query: 534 TSVEEEVQRIKNEH--SDDACAVMNDRVKGSLKVTRAFGAGFLKQPKW------------ 579
E E+QR+K EH ++ V DR+ G L RAFG + KW
Sbjct: 245 AQNERELQRLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGD---VKFKWSIDLQKRVIESG 301
Query: 580 -----NNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKDRFLILSSDGLYQYFTNKEAVS 634
+N + +Y T PY+ P + +H+L P+D+FL+L++DGL++ ++ V
Sbjct: 302 PDQLNDNEYTKFIPPNYH-TPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVR 360
Query: 635 EVELFI----QLQP-----------------------------EGDPAQHLVEEVLFRAA 661
V ++ QP + + A HL+ +
Sbjct: 361 IVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAV--GN 418
Query: 662 KKAGMDFHE----LLEIPQGDRRRYHDDVSIIVISLEGRI 697
+ G HE +L +P+ R Y DD++IIV+ +
Sbjct: 419 NEFGAVDHERLSKMLSLPEELARMYRDDITIIVVQFNSHV 458
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 133/340 (39%), Gaps = 106/340 (31%)
Query: 423 DVLKALSQALKKTEEAYLDIADRMLMENP---------ELALMGSCVLVMLMKGEDVYVM 473
DV +AL A K+ + DI+ + +P +A G+ V + G D++V
Sbjct: 160 DVKEALINAFKRLDN---DISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVA 216
Query: 474 NVGDSRAVLAQKAEPDYWLGKFRQDLERINEETLHDLEGFDGDKPCISDLNAFQLSVDHS 533
N GDSRA+L + E W +A LS DH+
Sbjct: 217 NTGDSRAMLGVQEEDGSW--------------------------------SAVTLSNDHN 244
Query: 534 TSVEEEVQRIKNEH--SDDACAVMNDRVKGSLKVTRAFGAGFLKQPKW------------ 579
E EV+R+K EH ++ V DR+ G L RAFG + KW
Sbjct: 245 AQNEREVERLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGD---VKFKWSIDLQKRVIESG 301
Query: 580 -----NNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKDRFLILSSDGLYQYFTNKEAVS 634
+N + +Y T PY+ P + +H+L P+D+FL+L++DGL++ ++ V
Sbjct: 302 PDQLNDNEYTKFIPPNYY-TPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVR 360
Query: 635 EVELFI----QLQP-----------------------------EGDPAQHLVEEVLFRAA 661
V ++ QP + + A HL+ +
Sbjct: 361 IVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAV--GN 418
Query: 662 KKAGMDFHE----LLEIPQGDRRRYHDDVSIIVISLEGRI 697
+ G HE +L +P+ R Y DD++IIV+ +
Sbjct: 419 NEFGAVDHERLSKMLSLPEELARMYRDDITIIVVQFNSHV 458
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 51/181 (28%)
Query: 457 GSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLERINEETLHDLEGFDGD 516
G +V L+ G+D+YV N GDSR V+ + +
Sbjct: 131 GCTAVVALLHGKDLYVANAGDSRCVVCRNGK----------------------------- 161
Query: 517 KPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMNDRVKGSLKVTRAFGAGFLKQ 576
A ++S DH E QRI+ ++ RV G L ++RA G K
Sbjct: 162 --------ALEMSFDHKPEDTVEYQRIEKAGGR---VTLDGRVNGGLNLSRAIGDHGYKM 210
Query: 577 PKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKDRFLILSSDGLYQYFTNKEAVSEV 636
K A +M I+ LP + +GP+D F++L+ DG++ + T+++ V V
Sbjct: 211 NKSLPAEEQM-----------ISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFV 259
Query: 637 E 637
+
Sbjct: 260 Q 260
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 101/264 (38%), Gaps = 64/264 (24%)
Query: 434 KTEEAYLDIADRMLMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLG 493
K A + +D++L E +GS +V L+ + V N GDSRAVL + E
Sbjct: 134 KIGRAVVGSSDKVL-EAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKE------ 186
Query: 494 KFRQDLERINEETLHDLEGFDGDKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACA 553
A LSVDH E+E RI+N
Sbjct: 187 -------------------------------AMPLSVDHKPDREDEYARIENA-GGKVIQ 214
Query: 554 VMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKD 613
RV G L ++R+ G +LK PY+ P + +D
Sbjct: 215 WQGARVFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSRED 254
Query: 614 RFLILSSDGLYQYFTNKEAVSEVELFIQLQPEGDPAQHLVEEVL-FRAAKKAGMDFHELL 672
LIL+SDGL+ N+E I + + + A L E A +A D+ +L
Sbjct: 255 ECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML 314
Query: 673 EIPQGDRRRYHDDVSIIVISLEGR 696
+ +G + D++SIIVI L+ +
Sbjct: 315 ALQKGSK----DNISIIVIDLKAQ 334
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 101/264 (38%), Gaps = 64/264 (24%)
Query: 434 KTEEAYLDIADRMLMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLG 493
K A + +D++L E +GS +V L+ + V N GDSRAVL + E
Sbjct: 133 KIGRAVVGSSDKVL-EAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKE------ 185
Query: 494 KFRQDLERINEETLHDLEGFDGDKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACA 553
A LSVDH E+E RI+N
Sbjct: 186 -------------------------------AMPLSVDHKPDREDEYARIENA-GGKVIQ 213
Query: 554 VMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKD 613
RV G L ++R+ G +LK PY+ P + +D
Sbjct: 214 WQGARVFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSRED 253
Query: 614 RFLILSSDGLYQYFTNKEAVSEVELFIQLQPEGDPAQHLVEEVL-FRAAKKAGMDFHELL 672
LIL+SDGL+ N+E I + + + A L E A +A D+ +L
Sbjct: 254 ECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML 313
Query: 673 EIPQGDRRRYHDDVSIIVISLEGR 696
+ +G + D++SIIVI L+ +
Sbjct: 314 ALQKGSK----DNISIIVIDLKAQ 333
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 101/264 (38%), Gaps = 64/264 (24%)
Query: 434 KTEEAYLDIADRMLMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLG 493
K A + +D++L E +GS +V L+ + V N GDSRAVL + E
Sbjct: 136 KIGRAVVGSSDKVL-EAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKE------ 188
Query: 494 KFRQDLERINEETLHDLEGFDGDKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACA 553
A LSVDH E+E RI+N
Sbjct: 189 -------------------------------AMPLSVDHKPDREDEYARIENA-GGKVIQ 216
Query: 554 VMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKD 613
RV G L ++R+ G +LK PY+ P + +D
Sbjct: 217 WQGARVFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSRED 256
Query: 614 RFLILSSDGLYQYFTNKEAVSEVELFIQLQPEGDPAQHLVEEVL-FRAAKKAGMDFHELL 672
LIL+SDGL+ N+E I + + + A L E A +A D+ +L
Sbjct: 257 ECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML 316
Query: 673 EIPQGDRRRYHDDVSIIVISLEGR 696
+ +G + D++SIIVI L+ +
Sbjct: 317 ALQKGSK----DNISIIVIDLKAQ 336
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 101/264 (38%), Gaps = 64/264 (24%)
Query: 434 KTEEAYLDIADRMLMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLG 493
K A + +D++L E +GS +V L+ + V N GDSRAVL + E
Sbjct: 130 KIGRAVVGSSDKVL-EAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKE------ 182
Query: 494 KFRQDLERINEETLHDLEGFDGDKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACA 553
A LSVDH E+E RI+N
Sbjct: 183 -------------------------------AMPLSVDHKPDREDEYARIENA-GGKVIQ 210
Query: 554 VMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKD 613
RV G L ++R+ G +LK PY+ P + +D
Sbjct: 211 WQGARVFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSRED 250
Query: 614 RFLILSSDGLYQYFTNKEAVSEVELFIQLQPEGDPAQHLVEEVL-FRAAKKAGMDFHELL 672
LIL+SDGL+ N+E I + + + A L E A +A D+ +L
Sbjct: 251 ECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML 310
Query: 673 EIPQGDRRRYHDDVSIIVISLEGR 696
+ +G + D++SIIVI L+ +
Sbjct: 311 ALQKGSK----DNISIIVIDLKAQ 330
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 101/264 (38%), Gaps = 64/264 (24%)
Query: 434 KTEEAYLDIADRMLMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLG 493
K A + +D++L E +GS +V L+ + V N GDSRAVL + E
Sbjct: 119 KIGRAVVGSSDKVL-EAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKE------ 171
Query: 494 KFRQDLERINEETLHDLEGFDGDKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACA 553
A LSVDH E+E RI+N
Sbjct: 172 -------------------------------AMPLSVDHKPDREDEYARIENA-GGKVIQ 199
Query: 554 VMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKD 613
RV G L ++R+ G +LK PY+ P + +D
Sbjct: 200 WQGARVFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSRED 239
Query: 614 RFLILSSDGLYQYFTNKEAVSEVELFIQLQPEGDPAQHLVEEVL-FRAAKKAGMDFHELL 672
LIL+SDGL+ N+E I + + + A L E A +A D+ +L
Sbjct: 240 ECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML 299
Query: 673 EIPQGDRRRYHDDVSIIVISLEGR 696
+ +G + D++SIIVI L+ +
Sbjct: 300 ALQKGSK----DNISIIVIDLKAQ 319
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 101/264 (38%), Gaps = 64/264 (24%)
Query: 434 KTEEAYLDIADRMLMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLG 493
K A + +D++L E +GS +V L+ + V N GDSRAVL + E
Sbjct: 143 KIGRAVVGSSDKVL-EAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKE------ 195
Query: 494 KFRQDLERINEETLHDLEGFDGDKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACA 553
A LSVDH E+E RI+N
Sbjct: 196 -------------------------------AMPLSVDHKPDREDEYARIENA-GGKVIQ 223
Query: 554 VMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKD 613
RV G L ++R+ G +LK PY+ P + +D
Sbjct: 224 WQGARVFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSRED 263
Query: 614 RFLILSSDGLYQYFTNKEAVSEVELFIQLQPEGDPAQHLVEEVL-FRAAKKAGMDFHELL 672
LIL+SDGL+ N+E I + + + A L E A +A D+ +L
Sbjct: 264 ECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML 323
Query: 673 EIPQGDRRRYHDDVSIIVISLEGR 696
+ +G + D++SIIVI L+ +
Sbjct: 324 ALQKGSK----DNISIIVIDLKAQ 343
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 54/182 (29%)
Query: 457 GSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLERINEETLHDLEGFDGD 516
GS + +++ + +Y +N GDSRAVL + +
Sbjct: 133 GSTAVGVMISPKHIYFINCGDSRAVLYRNGQV---------------------------- 164
Query: 517 KPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMNDRVKGSLKVTRAFGAGFLKQ 576
C S + DH E +RI+N +VM RV GSL V+RA G K
Sbjct: 165 --CFS-------TQDHKPCNPREKERIQNAGG----SVMIQRVNGSLAVSRALGDYDYKC 211
Query: 577 PKWNNALLEMFRIDYKG-TAPYINCLPSLYHHKLGPKDRFLILSSDGLYQYFTNKEAVSE 635
+D KG T ++ P +Y +D F+IL+ DG++ +N+E
Sbjct: 212 ------------VDGKGPTEQLVSPEPEVYEILRAEEDEFIILAXDGIWDVMSNEELCEY 259
Query: 636 VE 637
V+
Sbjct: 260 VK 261
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 93/247 (37%), Gaps = 67/247 (27%)
Query: 456 MGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLERINEETLHDLEGFDG 515
+GS +V ++ ++V N GDSRAVL + GK
Sbjct: 125 VGSTSVVAVVFPSHIFVANCGDSRAVLCR--------GK--------------------- 155
Query: 516 DKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMND-RVKGSLKVTRAFGAGFL 574
A LSVDH E+E RI E + N RV G L ++R+ G +L
Sbjct: 156 --------TALPLSVDHKPDREDEAARI--EAAGGKVIQWNGARVFGVLAMSRSIGDRYL 205
Query: 575 KQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKDRFLILSSDGLYQYFTNKEAVS 634
K P I P + K +D LIL+SDG++ T++EA
Sbjct: 206 K--------------------PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACE 245
Query: 635 EVELFIQL-----QPEGDPAQHLVEEVLFRAAKKAGMDFHELLEIPQGDRRRYHDDVSII 689
I L GD A L +E A M E L +R D++S++
Sbjct: 246 MARKRILLWHKKNAVAGD-ASLLADERRKEGKDPAAMSAAEYLS-KLAIQRGSKDNISVV 303
Query: 690 VISLEGR 696
V+ L+ R
Sbjct: 304 VVDLKPR 310
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 93/247 (37%), Gaps = 67/247 (27%)
Query: 456 MGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLERINEETLHDLEGFDG 515
+GS +V ++ ++V N GDSRAVL + GK
Sbjct: 137 VGSTSVVAVVFPSHIFVANCGDSRAVLCR--------GK--------------------- 167
Query: 516 DKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMND-RVKGSLKVTRAFGAGFL 574
A LSVDH E+E RI E + N RV G L ++R+ G +L
Sbjct: 168 --------TALPLSVDHKPDREDEAARI--EAAGGKVIQWNGARVFGVLAMSRSIGDRYL 217
Query: 575 KQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKDRFLILSSDGLYQYFTNKEAVS 634
K P I P + K +D LIL+SDG++ T++EA
Sbjct: 218 K--------------------PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACE 257
Query: 635 EVELFIQL-----QPEGDPAQHLVEEVLFRAAKKAGMDFHELLEIPQGDRRRYHDDVSII 689
I L GD A L +E A M E L +R D++S++
Sbjct: 258 MARKRILLWHKKNAVAGD-ASLLADERRKEGKDPAAMSAAEYLS-KLAIQRGSKDNISVV 315
Query: 690 VISLEGR 696
V+ L+ R
Sbjct: 316 VVDLKPR 322
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 93/246 (37%), Gaps = 65/246 (26%)
Query: 456 MGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLERINEETLHDLEGFDG 515
+GS +V ++ ++V N GDSRAVL + GK
Sbjct: 122 VGSTSVVAVVFPSHIFVANCGDSRAVLCR--------GK--------------------- 152
Query: 516 DKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMND-RVKGSLKVTRAFGAGFL 574
A LSVDH E+E RI E + N RV G L ++R+ G +L
Sbjct: 153 --------TALPLSVDHKPDREDEAARI--EAAGGKVIQWNGARVFGVLAMSRSIGDRYL 202
Query: 575 KQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKDRFLILSSDGLYQYFTNKEAV- 633
K P I P + K +D LIL+SDG++ T++EA
Sbjct: 203 K--------------------PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACE 242
Query: 634 ---SEVELFIQLQPEGDPAQHLVEEVLFRAAKKAGMDFHELLEIPQGDRRRYHDDVSIIV 690
+ L+ + A L +E A M E L +R D++S++V
Sbjct: 243 MARKRILLWHKKNAVAGGASLLADERRKEGKDPAAMSAAEYLS-KLAIQRGSKDNISVVV 301
Query: 691 ISLEGR 696
+ L+ R
Sbjct: 302 VDLKPR 307
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 92/247 (37%), Gaps = 70/247 (28%)
Query: 456 MGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLERINEETLHDLEGFDG 515
+GS +V ++ ++V N GDSRAVL + P
Sbjct: 131 VGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTP--------------------------- 163
Query: 516 DKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMND-RVKGSLKVTRAFGAGFL 574
LSVDH ++E RI E + N RV G L ++R+ G +L
Sbjct: 164 ----------LALSVDHKPDRDDEAARI--EAAGGKVIRWNGARVFGVLAMSRSIGDRYL 211
Query: 575 KQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKDRFLILSSDGLYQYFTNKEAVS 634
K P + P + + +D LIL+SDGL+ TN+E
Sbjct: 212 K--------------------PSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCD 251
Query: 635 EVELFIQLQPEGDPAQHLVEEVLFRAAKK------AGMDFHELLEIPQGDRRRYHDDVSI 688
I L + + + E L A K+ A M E L ++ D++S+
Sbjct: 252 LARKRILLWHKKNA---MAGEALLPAEKRGEGKDPAAMSAAEYLS-KMALQKGSKDNISV 307
Query: 689 IVISLEG 695
+V+ L+G
Sbjct: 308 VVVDLKG 314
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|C Chain C, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 353
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 108/286 (37%), Gaps = 59/286 (20%)
Query: 422 GDVLKALSQALKKTEEAYLDIADRMLMENPELALM-----------GSCVLVMLMKGEDV 470
DV + L QA E ++L+ D L E L L G+ +V ++ +
Sbjct: 102 ADVRRVLLQAFDVVERSFLESIDDALAEKASLQLERLKTLEREISGGAMAVVAVLLNNKL 161
Query: 471 YVMNVGDSRAVLAQKAEPDYWLGKFRQDLERINEETLHDLEGFDGDKPCISDLNAFQLSV 530
YV NVG +RA+L K + L QL+V
Sbjct: 162 YVANVGTNRALLC---------------------------------KSTVDGLQVTQLNV 188
Query: 531 DHSTSVEEEVQRIKNEHSDDACAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRID 590
DH+T E+E+ R+ ++ DA + + + TR G +K + LL +
Sbjct: 189 DHTTENEDELFRL-SQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAK-- 245
Query: 591 YKGTAPYINCLPSLYHHKLGPKD---RFLILSSDGLYQYFTNKEAVSEVELFIQLQPEGD 647
+ P I P + H P D FL+L S+GLY+ + I + +
Sbjct: 246 ---SKPII-AEPEI--HGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTE 299
Query: 648 PAQHLVEEVLFRAAKKAGMDFHELLEIPQGDRRRY---HDDVSIIV 690
A+ + + +A H G+R R+ H+D++++V
Sbjct: 300 FAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLV 345
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 73/217 (33%)
Query: 447 LMENPELALMGSCVLVMLMK-GEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLERINEE 505
L + L G+ V L++ G ++ V +VGDSRA+L +K +P
Sbjct: 92 LSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKP----------------- 134
Query: 506 TLHDLEGFDGDKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMND-RVKGSLK 564
+L++DH+ ++E +RIK A + V G L
Sbjct: 135 --------------------MKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLA 174
Query: 565 VTRAFG------AGFLKQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKDRFLIL 618
+TR+ G +G + +P E RI L+H D FL+L
Sbjct: 175 MTRSIGDLDLKTSGVIAEP-------ETKRI-------------KLHH----ADDSFLVL 210
Query: 619 SSDGLYQYFTNKEAVSEVELFIQLQPEGDPAQHLVEE 655
++DG+ + N + + + F+ + + A H V E
Sbjct: 211 TTDGI-NFMVNSQEICD---FVNQCHDPNEAAHAVTE 243
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 68/182 (37%), Gaps = 65/182 (35%)
Query: 457 GSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLERINEETLHDLEGFDGD 516
GS + +L+ + Y +N GDSR +L + + ++
Sbjct: 126 GSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFF------------------------- 160
Query: 517 KPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMNDRVKGSLKVTRAFGAGFLKQ 576
+ DH S E +RI+N +VM RV GSL V+RA G
Sbjct: 161 ------------TQDHKPSNPLEKERIQNAGG----SVMIQRVNGSLAVSRALG------ 198
Query: 577 PKWNNALLEMFRIDYK---GTAP---YINCLPSLYH-HKLGPKDRFLILSSDGLYQYFTN 629
DYK G P ++ P ++ + D+F+IL+ DG++ N
Sbjct: 199 -----------DFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGN 247
Query: 630 KE 631
+E
Sbjct: 248 EE 249
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 82/217 (37%), Gaps = 73/217 (33%)
Query: 447 LMENPELALMGSCVLVMLMK-GEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLERINEE 505
L + L G+ V L++ G ++ V +VGDSRA+L +K +P
Sbjct: 206 LSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKP----------------- 248
Query: 506 TLHDLEGFDGDKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMND-RVKGSLK 564
+L++DH+ ++E +RIK A + V G L
Sbjct: 249 --------------------MKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLA 288
Query: 565 VTRAFG------AGFLKQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKDRFLIL 618
+TR+ G +G + +P+ L HH D FL+L
Sbjct: 289 MTRSIGDLDLKTSGVIAEPETKRIKL---------------------HH---ADDSFLVL 324
Query: 619 SSDGLYQYFTNKEAVSEVELFIQLQPEGDPAQHLVEE 655
++DG+ + N + + + F+ + + A H V E
Sbjct: 325 TTDGI-NFMVNSQEICD---FVNQCHDPNEAAHAVTE 357
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 68/182 (37%), Gaps = 65/182 (35%)
Query: 457 GSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLERINEETLHDLEGFDGD 516
GS + +L+ + Y +N GDSR +L + + ++
Sbjct: 126 GSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFF------------------------- 160
Query: 517 KPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMNDRVKGSLKVTRAFGAGFLKQ 576
+ DH S E +RI+N +VM RV GSL V+RA G
Sbjct: 161 ------------TQDHKPSNPLEKERIQNAGG----SVMIQRVNGSLAVSRALG------ 198
Query: 577 PKWNNALLEMFRIDYK---GTAP---YINCLPSLYH-HKLGPKDRFLILSSDGLYQYFTN 629
DYK G P ++ P ++ + D+F+IL+ DG++ N
Sbjct: 199 -----------DFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGN 247
Query: 630 KE 631
+E
Sbjct: 248 EE 249
>pdb|2CM1|A Chain A, Crystal Structure Of The Catalytic Domain Of Serine
Threonine Protein Phosphatase Pstp In Complex With 2
Manganese Ions
Length = 260
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 422 GDVLKALSQALKKTEEAYLDIADRMLMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAV 481
GD+L L A++ A IA ++ ME P+L MG+ + +L G + ++++GDSR
Sbjct: 87 GDLLAKLDAAVRAGNSA---IAAQVEME-PDLEGMGTTLTAILFAGNRLGLVHIGDSRGY 142
Query: 482 LAQKAE 487
L + E
Sbjct: 143 LLRDGE 148
>pdb|2J4O|A Chain A, Structure Of Tab1
Length = 401
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 97/258 (37%), Gaps = 49/258 (18%)
Query: 439 YLDIADRMLMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQD 498
Y I +R+ E++ G+ +V ++ +YV NVG +RA+L
Sbjct: 148 YQKILERLKTLEREIS-GGAMAVVAVLLNNKLYVANVGTNRALLC--------------- 191
Query: 499 LERINEETLHDLEGFDGDKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMNDR 558
K + L QL+VDH+T E+E+ R+ ++ DA +
Sbjct: 192 ------------------KSTVDGLQVTQLNVDHTTENEDELFRL-SQLGLDAGKIKQVG 232
Query: 559 VKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKD---RF 615
+ + TR G +K + LL + P I H P D F
Sbjct: 233 IICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEI--------HGAQPLDGVTGF 284
Query: 616 LILSSDGLYQYFTNKEAVSEVELFIQLQPEGDPAQHLVEEVLFRAAKKAGMDFHELLEIP 675
L+L S+GLY+ + I + + A+ + + +A H
Sbjct: 285 LVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFAS 344
Query: 676 QGDRRRY---HDDVSIIV 690
G+R R+ H+D++++V
Sbjct: 345 GGERARFCPRHEDMTLLV 362
>pdb|2POM|A Chain A, Tab1 With Manganese Ion
Length = 372
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 97/258 (37%), Gaps = 49/258 (18%)
Query: 439 YLDIADRMLMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQD 498
Y I +R+ E++ G+ +V ++ +YV NVG +RA+L
Sbjct: 150 YQKILERLKTLEREIS-GGAMAVVAVLLNNKLYVANVGTNRALLC--------------- 193
Query: 499 LERINEETLHDLEGFDGDKPCISDLNAFQLSVDHSTSVEEEVQRIKNEHSDDACAVMNDR 558
K + L QL+VDH+T E+E+ R+ ++ DA +
Sbjct: 194 ------------------KSTVDGLQVTQLNVDHTTENEDELFRL-SQLGLDAGKIKQVG 234
Query: 559 VKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYKGTAPYINCLPSLYHHKLGPKD---RF 615
+ + TR G +K + LL + P I H P D F
Sbjct: 235 IICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEI--------HGAQPLDGVTGF 286
Query: 616 LILSSDGLYQYFTNKEAVSEVELFIQLQPEGDPAQHLVEEVLFRAAKKAGMDFHELLEIP 675
L+L S+GLY+ + I + + A+ + + +A H
Sbjct: 287 LVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFAS 346
Query: 676 QGDRRRY---HDDVSIIV 690
G+R R+ H+D++++V
Sbjct: 347 GGERARFCPRHEDMTLLV 364
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 448 MENPE---LALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQ 497
+ NP+ LA +G L++ KGE+ + VGD +L Q+A+ + + F Q
Sbjct: 419 VHNPKSDRLAKIGKGTLIVEGKGENKGSLKVGDGTVILKQQADANNKVKAFSQ 471
>pdb|2GE5|A Chain A, Ecorv Restriction Endonuclease C-Terminal Deletion
MutantGATATCCA2+
pdb|2GE5|B Chain B, Ecorv Restriction Endonuclease C-Terminal Deletion
MutantGATATCCA2+
Length = 219
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 192 RVLQRAISKTISRGQNLNSIVAPIKGVASVKEPEWVFASDKNQNDNSNNL 241
RV R S LN I P KGV + +WV A D + N+ N+
Sbjct: 139 RVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNI 188
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 446 MLMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLE 500
+ +EN +L+L+G V++ K E V GD+ A+ + A+ RQ++E
Sbjct: 263 LTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQ-------IRQEIE 310
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 446 MLMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKFRQDLE 500
+ +EN +L+L+G V++ K E V GD+ A+ + A+ RQ++E
Sbjct: 305 LTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQ-------IRQEIE 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,878,560
Number of Sequences: 62578
Number of extensions: 860630
Number of successful extensions: 2469
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2418
Number of HSP's gapped (non-prelim): 76
length of query: 702
length of database: 14,973,337
effective HSP length: 106
effective length of query: 596
effective length of database: 8,340,069
effective search space: 4970681124
effective search space used: 4970681124
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)