Query 005317
Match_columns 702
No_of_seqs 662 out of 4118
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 21:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.5E-41 1.9E-45 368.1 41.1 502 49-626 61-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-40 4.9E-45 364.8 40.4 480 153-643 63-579 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5.9E-26 2E-30 234.1 41.5 350 253-642 8-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-25 4.6E-30 231.4 43.0 373 215-629 5-388 (388)
5 4g26_A Pentatricopeptide repea 99.9 2.4E-27 8.3E-32 248.0 18.7 209 91-322 9-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 4.7E-27 1.6E-31 245.8 20.0 210 192-423 8-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.9E-23 1E-27 222.6 32.2 438 176-645 8-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.9E-23 1.3E-27 221.7 33.0 404 211-645 8-446 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.8E-21 6.1E-26 210.0 37.1 423 174-644 25-492 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 5E-21 1.7E-25 201.5 34.7 335 274-639 25-405 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.8E-20 6.1E-25 202.2 34.2 235 381-619 248-501 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 2.3E-20 7.8E-25 196.4 34.2 307 308-644 24-359 (450)
13 1xi4_A Clathrin heavy chain; a 99.9 1.4E-16 4.8E-21 176.0 54.8 574 14-637 698-1378(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 1.7E-18 5.9E-23 175.9 35.1 323 310-688 3-354 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 1.1E-15 3.7E-20 169.0 56.0 569 8-636 950-1585(1630)
16 3ieg_A DNAJ homolog subfamily 99.8 5.8E-18 2E-22 171.9 33.5 324 274-627 2-353 (359)
17 3hym_B Cell division cycle pro 99.8 1.2E-17 4E-22 167.6 28.4 280 348-630 25-321 (330)
18 3hym_B Cell division cycle pro 99.8 3.1E-17 1E-21 164.5 29.7 284 374-689 20-320 (330)
19 2xm6_A Protein corresponding t 99.8 2.6E-16 8.8E-21 167.0 38.0 364 245-627 40-453 (490)
20 2xm6_A Protein corresponding t 99.8 2.7E-15 9.2E-20 159.1 42.0 353 272-645 36-434 (490)
21 1b89_A Protein (clathrin heavy 99.8 3.5E-17 1.2E-21 162.6 24.5 284 155-470 15-306 (449)
22 1fch_A Peroxisomal targeting s 99.8 2.5E-17 8.5E-22 168.0 23.8 280 356-640 36-356 (368)
23 2ooe_A Cleavage stimulation fa 99.8 2.7E-15 9.3E-20 160.8 40.3 413 206-644 10-493 (530)
24 3mkr_A Coatomer subunit epsilo 99.8 1.4E-16 4.8E-21 155.5 26.3 269 355-637 9-288 (291)
25 1b89_A Protein (clathrin heavy 99.8 7.9E-17 2.7E-21 160.1 23.3 286 256-574 15-308 (449)
26 1fch_A Peroxisomal targeting s 99.7 3.8E-17 1.3E-21 166.7 20.0 314 359-697 15-353 (368)
27 3mkr_A Coatomer subunit epsilo 99.7 1.1E-16 3.8E-21 156.2 21.8 247 383-644 6-265 (291)
28 4g1t_A Interferon-induced prot 99.7 1E-15 3.4E-20 161.9 30.7 384 243-654 50-470 (472)
29 2ooe_A Cleavage stimulation fa 99.7 7.4E-15 2.5E-19 157.4 36.6 406 172-612 11-495 (530)
30 4eqf_A PEX5-related protein; a 99.7 1.1E-16 3.6E-21 163.2 21.0 260 375-639 64-352 (365)
31 3cv0_A Peroxisome targeting si 99.7 2.6E-16 8.9E-21 157.4 20.7 257 379-641 24-313 (327)
32 4eqf_A PEX5-related protein; a 99.7 4.2E-16 1.4E-20 158.7 21.0 232 410-644 64-311 (365)
33 4g1t_A Interferon-induced prot 99.7 1.4E-14 4.7E-19 153.2 26.8 383 206-621 48-471 (472)
34 2pl2_A Hypothetical conserved 99.7 2.9E-15 9.9E-20 139.6 18.9 194 443-640 2-211 (217)
35 3uq3_A Heat shock protein STI1 99.6 1.2E-14 4.1E-19 139.7 21.7 225 377-644 6-237 (258)
36 3cv0_A Peroxisome targeting si 99.6 4.8E-14 1.7E-18 140.8 26.7 265 275-610 21-316 (327)
37 3spa_A Mtrpol, DNA-directed RN 99.6 1.2E-16 4.1E-21 171.2 5.8 130 141-270 125-262 (1134)
38 3uq3_A Heat shock protein STI1 99.6 1.6E-14 5.5E-19 138.8 18.4 234 345-623 5-256 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.6 6.5E-16 2.2E-20 165.6 8.1 129 243-371 126-262 (1134)
40 3u4t_A TPR repeat-containing p 99.6 1.2E-13 4.2E-18 133.9 22.1 244 380-628 7-269 (272)
41 3e4b_A ALGK; tetratricopeptide 99.6 2.2E-13 7.5E-18 142.0 25.2 377 216-642 10-420 (452)
42 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-13 5.1E-18 133.5 22.3 241 388-637 17-269 (275)
43 2pl2_A Hypothetical conserved 99.6 9.5E-14 3.3E-18 129.2 19.2 193 475-698 3-209 (217)
44 1ouv_A Conserved hypothetical 99.6 1.2E-12 4E-17 127.0 26.3 224 375-645 5-253 (273)
45 2ho1_A Type 4 fimbrial biogene 99.6 2.1E-13 7.1E-18 130.6 20.5 196 447-644 38-239 (252)
46 3e4b_A ALGK; tetratricopeptide 99.6 2.9E-13 9.8E-18 141.1 22.1 345 280-646 8-390 (452)
47 2q7f_A YRRB protein; TPR, prot 99.5 1E-13 3.5E-18 131.8 17.1 197 445-644 22-223 (243)
48 2vq2_A PILW, putative fimbrial 99.5 4.6E-13 1.6E-17 125.5 21.3 196 446-643 8-211 (225)
49 3vtx_A MAMA; tetratricopeptide 99.5 3.4E-13 1.2E-17 122.1 19.4 165 476-644 4-171 (184)
50 3u4t_A TPR repeat-containing p 99.5 4E-13 1.4E-17 130.2 20.0 226 414-644 6-251 (272)
51 1ouv_A Conserved hypothetical 99.5 3.9E-12 1.3E-16 123.3 26.0 227 344-614 5-256 (273)
52 2h6f_A Protein farnesyltransfe 99.5 1.2E-12 4E-17 132.1 21.7 245 376-627 97-366 (382)
53 3sf4_A G-protein-signaling mod 99.5 3.2E-13 1.1E-17 139.4 17.8 195 448-642 89-335 (406)
54 2h6f_A Protein farnesyltransfe 99.5 1.3E-12 4.4E-17 131.7 21.5 226 412-643 98-348 (382)
55 2q7f_A YRRB protein; TPR, prot 99.5 4.6E-13 1.6E-17 127.3 17.3 214 376-628 23-241 (243)
56 4a1s_A PINS, partner of inscut 99.5 3.2E-13 1.1E-17 139.8 16.7 261 382-643 54-372 (411)
57 2ho1_A Type 4 fimbrial biogene 99.5 4.5E-12 1.5E-16 121.2 23.5 205 376-619 37-248 (252)
58 3ro2_A PINS homolog, G-protein 99.5 6.5E-13 2.2E-17 133.0 17.7 261 383-643 12-332 (338)
59 1xnf_A Lipoprotein NLPI; TPR, 99.5 1E-12 3.5E-17 127.5 18.0 220 421-644 15-245 (275)
60 4abn_A Tetratricopeptide repea 99.5 7E-13 2.4E-17 139.1 17.5 190 445-639 101-317 (474)
61 2vq2_A PILW, putative fimbrial 99.5 1.2E-11 4.1E-16 115.7 24.2 207 375-620 7-222 (225)
62 3sf4_A G-protein-signaling mod 99.4 2.8E-12 9.6E-17 132.3 19.8 155 478-632 188-365 (406)
63 4i17_A Hypothetical protein; T 99.4 4E-12 1.4E-16 119.4 17.1 182 476-686 6-226 (228)
64 4e6h_A MRNA 3'-END-processing 99.4 1.5E-09 5E-14 116.9 38.8 416 172-614 64-575 (679)
65 4gyw_A UDP-N-acetylglucosamine 99.4 3.2E-12 1.1E-16 139.3 18.3 162 476-642 8-173 (723)
66 3vtx_A MAMA; tetratricopeptide 99.4 6.1E-12 2.1E-16 113.7 16.9 166 445-614 4-175 (184)
67 3as5_A MAMA; tetratricopeptide 99.4 2.5E-11 8.5E-16 109.6 19.4 163 478-644 9-174 (186)
68 4abn_A Tetratricopeptide repea 99.4 6.7E-12 2.3E-16 131.6 17.3 179 462-644 84-288 (474)
69 3ulq_A Response regulator aspa 99.4 7.4E-12 2.5E-16 128.0 15.6 193 449-642 146-367 (383)
70 4a1s_A PINS, partner of inscut 99.3 1.3E-11 4.5E-16 127.6 16.8 272 312-611 50-374 (411)
71 3ulq_A Response regulator aspa 99.3 8.4E-11 2.9E-15 120.1 22.2 229 383-611 110-370 (383)
72 3nf1_A KLC 1, kinesin light ch 99.3 2E-12 6.7E-17 128.0 9.5 238 375-642 26-306 (311)
73 3ro2_A PINS homolog, G-protein 99.3 3.3E-11 1.1E-15 120.5 18.5 272 313-612 8-335 (338)
74 2ond_A Cleavage stimulation fa 99.3 2.2E-10 7.4E-15 113.0 24.0 182 428-613 81-274 (308)
75 1hz4_A MALT regulatory protein 99.3 1E-09 3.5E-14 111.6 28.7 258 385-642 23-321 (373)
76 2ond_A Cleavage stimulation fa 99.3 1.9E-10 6.6E-15 113.3 21.7 179 462-645 80-272 (308)
77 4e6h_A MRNA 3'-END-processing 99.3 2.8E-08 9.7E-13 107.0 39.3 148 87-237 47-222 (679)
78 4i17_A Hypothetical protein; T 99.3 1.6E-10 5.4E-15 108.4 18.6 205 410-625 6-225 (228)
79 4gyw_A UDP-N-acetylglucosamine 99.3 7.8E-11 2.7E-15 128.4 17.7 157 509-694 5-165 (723)
80 3nf1_A KLC 1, kinesin light ch 99.3 1.2E-11 4E-16 122.3 10.3 246 343-612 25-310 (311)
81 3as5_A MAMA; tetratricopeptide 99.3 3.5E-10 1.2E-14 101.9 18.9 167 447-616 9-180 (186)
82 3q15_A PSP28, response regulat 99.2 1.3E-10 4.4E-15 118.5 17.0 193 449-642 144-364 (378)
83 3q15_A PSP28, response regulat 99.2 2.7E-09 9.2E-14 108.6 26.0 229 382-610 107-366 (378)
84 4ga2_A E3 SUMO-protein ligase 99.2 5.4E-11 1.9E-15 103.0 11.0 121 519-642 4-128 (150)
85 3qky_A Outer membrane assembly 99.2 3.2E-10 1.1E-14 108.9 17.5 84 584-690 152-248 (261)
86 4ga2_A E3 SUMO-protein ligase 99.1 5.9E-11 2E-15 102.7 7.7 142 483-629 3-149 (150)
87 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.9E-09 1E-13 99.4 19.2 180 448-647 6-217 (225)
88 3edt_B KLC 2, kinesin light ch 99.1 9.4E-10 3.2E-14 106.7 15.7 222 422-643 12-281 (283)
89 3mv2_B Coatomer subunit epsilo 99.1 9.5E-09 3.2E-13 97.9 21.6 174 465-643 85-282 (310)
90 1qqe_A Vesicular transport pro 99.1 4.1E-10 1.4E-14 109.9 12.8 187 455-641 46-267 (292)
91 4gco_A Protein STI-1; structur 99.1 7.4E-10 2.5E-14 92.3 12.3 99 544-642 8-109 (126)
92 2fo7_A Synthetic consensus TPR 99.1 2.9E-09 9.8E-14 90.0 15.2 128 515-644 4-133 (136)
93 3mv2_B Coatomer subunit epsilo 99.1 7.5E-09 2.6E-13 98.6 19.3 181 430-618 85-291 (310)
94 3qky_A Outer membrane assembly 99.1 2.8E-09 9.4E-14 102.2 16.5 186 445-633 14-251 (261)
95 3qou_A Protein YBBN; thioredox 99.1 3.1E-09 1.1E-13 103.2 16.5 177 462-642 102-283 (287)
96 1hz4_A MALT regulatory protein 99.1 5.8E-08 2E-12 98.5 26.7 121 486-612 224-352 (373)
97 2pzi_A Probable serine/threoni 99.1 5.8E-10 2E-14 122.4 12.3 168 457-629 402-583 (681)
98 3gyz_A Chaperone protein IPGC; 99.0 1E-09 3.5E-14 94.3 10.5 102 543-644 30-134 (151)
99 3rjv_A Putative SEL1 repeat pr 99.0 1.7E-08 5.9E-13 93.0 19.3 172 465-645 5-199 (212)
100 2r5s_A Uncharacterized protein 99.0 2.2E-09 7.4E-14 95.9 12.6 156 483-642 12-172 (176)
101 2vsy_A XCC0866; transferase, g 99.0 3.5E-09 1.2E-13 114.2 15.5 159 459-621 2-169 (568)
102 2vgx_A Chaperone SYCD; alterna 99.0 1.9E-09 6.5E-14 92.8 10.3 102 543-644 15-119 (148)
103 2fo7_A Synthetic consensus TPR 99.0 1.4E-08 4.9E-13 85.5 15.6 131 479-612 3-135 (136)
104 1qqe_A Vesicular transport pro 99.0 7E-09 2.4E-13 101.1 15.3 172 461-643 32-228 (292)
105 3qou_A Protein YBBN; thioredox 99.0 1.4E-08 4.7E-13 98.7 16.3 154 509-691 114-272 (287)
106 2pzi_A Probable serine/threoni 98.9 4E-09 1.4E-13 115.8 13.6 152 488-644 402-564 (681)
107 3edt_B KLC 2, kinesin light ch 98.9 1.1E-08 3.7E-13 99.2 15.3 206 376-609 43-281 (283)
108 3urz_A Uncharacterized protein 98.9 1.4E-08 4.7E-13 93.4 15.0 127 482-612 59-189 (208)
109 4gco_A Protein STI-1; structur 98.9 7.8E-09 2.7E-13 86.1 11.9 114 508-624 8-125 (126)
110 3urz_A Uncharacterized protein 98.9 6.6E-09 2.2E-13 95.5 12.2 157 482-644 9-187 (208)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.7E-08 9.2E-13 91.9 15.3 129 478-613 7-154 (213)
112 3u3w_A Transcriptional activat 98.9 1.6E-07 5.4E-12 91.6 21.5 161 482-642 80-265 (293)
113 2ifu_A Gamma-SNAP; membrane fu 98.9 2.7E-08 9.4E-13 97.7 15.6 218 389-635 4-253 (307)
114 2ifu_A Gamma-SNAP; membrane fu 98.9 1.3E-08 4.4E-13 100.1 13.0 197 423-641 3-222 (307)
115 2r5s_A Uncharacterized protein 98.9 4.2E-08 1.4E-12 87.4 14.6 153 514-693 8-163 (176)
116 2vsy_A XCC0866; transferase, g 98.9 3.4E-08 1.2E-12 106.4 16.7 150 491-644 3-158 (568)
117 2qfc_A PLCR protein; TPR, HTH, 98.8 1E-07 3.4E-12 93.0 17.7 164 479-642 77-265 (293)
118 3upv_A Heat shock protein STI1 98.8 4.6E-08 1.6E-12 81.5 12.9 119 548-686 4-124 (126)
119 2xcb_A PCRH, regulatory protei 98.8 1.9E-08 6.7E-13 85.9 10.3 101 543-643 12-115 (142)
120 1a17_A Serine/threonine protei 98.8 9.2E-08 3.2E-12 84.0 14.1 126 514-642 15-145 (166)
121 2uy1_A Cleavage stimulation fa 98.8 6.4E-06 2.2E-10 86.0 30.0 366 187-608 7-412 (493)
122 2e2e_A Formate-dependent nitri 98.8 3.1E-08 1E-12 88.4 10.7 120 522-644 20-145 (177)
123 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.8E-07 6.1E-12 87.1 16.2 184 412-616 5-220 (225)
124 1p5q_A FKBP52, FK506-binding p 98.7 7.3E-08 2.5E-12 95.8 13.5 127 513-642 148-293 (336)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.3E-07 7.7E-12 85.5 15.9 123 517-644 11-151 (213)
126 2lni_A Stress-induced-phosphop 98.7 8.3E-08 2.8E-12 80.6 11.9 115 512-629 16-133 (133)
127 2vyi_A SGTA protein; chaperone 98.7 1.4E-07 4.8E-12 78.8 12.6 116 512-630 12-130 (131)
128 2kck_A TPR repeat; tetratricop 98.7 7.3E-08 2.5E-12 78.1 10.4 98 548-645 6-108 (112)
129 1hxi_A PEX5, peroxisome target 98.7 5.1E-08 1.7E-12 80.4 9.3 96 549-644 18-115 (121)
130 1na0_A Designed protein CTPR3; 98.7 2E-07 6.8E-12 77.1 13.2 115 512-628 9-125 (125)
131 2lni_A Stress-induced-phosphop 98.7 1.8E-07 6.2E-12 78.5 13.0 96 548-643 16-113 (133)
132 4f3v_A ESX-1 secretion system 98.7 3E-07 1E-11 86.4 15.5 182 458-644 18-238 (282)
133 2vyi_A SGTA protein; chaperone 98.7 2.6E-07 8.9E-12 77.1 13.9 117 548-690 12-130 (131)
134 2c2l_A CHIP, carboxy terminus 98.7 5.8E-08 2E-12 93.8 10.6 191 446-643 4-199 (281)
135 1na0_A Designed protein CTPR3; 98.7 3.1E-07 1.1E-11 75.9 13.5 96 548-643 9-106 (125)
136 3rjv_A Putative SEL1 repeat pr 98.7 7.4E-07 2.5E-11 81.9 17.1 160 445-611 17-199 (212)
137 1elw_A TPR1-domain of HOP; HOP 98.7 2.6E-07 8.9E-12 75.5 12.7 96 548-643 4-101 (118)
138 4gcn_A Protein STI-1; structur 98.7 7.6E-08 2.6E-12 80.2 8.9 94 549-642 9-111 (127)
139 3dra_A Protein farnesyltransfe 98.6 1.8E-05 6.3E-10 76.2 26.4 227 389-622 46-301 (306)
140 3dra_A Protein farnesyltransfe 98.6 2.7E-06 9.1E-11 82.0 20.5 211 427-642 49-286 (306)
141 2vgx_A Chaperone SYCD; alterna 98.6 6.4E-08 2.2E-12 83.1 8.3 115 500-619 10-128 (148)
142 2fbn_A 70 kDa peptidylprolyl i 98.6 2E-08 6.9E-13 91.5 5.3 96 549-644 89-187 (198)
143 3q49_B STIP1 homology and U bo 98.6 2.6E-07 9E-12 78.1 11.7 98 547-644 8-107 (137)
144 3sz7_A HSC70 cochaperone (SGT) 98.6 2.2E-07 7.6E-12 81.5 11.3 108 512-622 11-121 (164)
145 3u3w_A Transcriptional activat 98.6 4E-06 1.4E-10 81.5 21.3 158 452-609 81-266 (293)
146 2xcb_A PCRH, regulatory protei 98.6 1.8E-07 6.2E-12 79.7 9.8 120 499-623 6-129 (142)
147 3gyz_A Chaperone protein IPGC; 98.6 3.3E-07 1.1E-11 78.6 11.3 104 508-614 31-138 (151)
148 2dba_A Smooth muscle cell asso 98.6 6.3E-07 2.2E-11 76.8 13.0 95 548-642 28-127 (148)
149 3gw4_A Uncharacterized protein 98.6 1E-06 3.6E-11 80.2 14.9 153 489-642 4-175 (203)
150 2uy1_A Cleavage stimulation fa 98.6 2.8E-05 9.7E-10 81.1 27.4 348 44-403 18-411 (493)
151 3upv_A Heat shock protein STI1 98.5 5.6E-07 1.9E-11 74.8 11.3 110 513-625 5-123 (126)
152 4f3v_A ESX-1 secretion system 98.5 4.1E-06 1.4E-10 78.7 17.9 138 479-621 104-248 (282)
153 2e2e_A Formate-dependent nitri 98.5 4.7E-07 1.6E-11 80.6 11.1 127 488-618 21-153 (177)
154 2dba_A Smooth muscle cell asso 98.5 1.2E-06 4.1E-11 75.0 13.4 114 511-627 27-146 (148)
155 2hr2_A Hypothetical protein; a 98.5 3.8E-07 1.3E-11 77.1 9.7 63 581-643 58-131 (159)
156 2fbn_A 70 kDa peptidylprolyl i 98.5 1E-07 3.6E-12 86.7 6.8 116 549-690 39-172 (198)
157 3sz7_A HSC70 cochaperone (SGT) 98.5 7.2E-07 2.5E-11 78.2 12.0 98 548-645 11-110 (164)
158 2xev_A YBGF; tetratricopeptide 98.5 1E-06 3.4E-11 73.5 12.2 92 552-643 6-105 (129)
159 2qfc_A PLCR protein; TPR, HTH, 98.5 4.5E-06 1.5E-10 81.2 18.6 161 450-610 79-267 (293)
160 1elw_A TPR1-domain of HOP; HOP 98.5 1.4E-06 4.9E-11 70.9 12.8 109 513-624 5-116 (118)
161 3rkv_A Putative peptidylprolyl 98.5 8.5E-07 2.9E-11 77.5 11.2 85 580-690 63-148 (162)
162 3gw4_A Uncharacterized protein 98.5 1.2E-06 4.1E-11 79.8 12.3 153 458-610 4-177 (203)
163 1p5q_A FKBP52, FK506-binding p 98.4 1.1E-06 3.7E-11 87.3 12.3 116 525-643 126-259 (336)
164 3q49_B STIP1 homology and U bo 98.4 1.4E-06 4.9E-11 73.4 11.1 113 510-625 7-127 (137)
165 4gcn_A Protein STI-1; structur 98.4 1.8E-06 6.3E-11 71.6 10.5 102 514-619 10-121 (127)
166 1a17_A Serine/threonine protei 98.4 5.1E-06 1.8E-10 72.6 13.9 128 478-609 14-146 (166)
167 1elr_A TPR2A-domain of HOP; HO 98.4 1.3E-06 4.3E-11 72.9 8.9 96 548-643 4-108 (131)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.7E-06 9.1E-11 88.4 13.2 95 548-642 317-414 (457)
169 1wao_1 Serine/threonine protei 98.4 8.1E-07 2.8E-11 92.7 9.0 117 519-638 13-134 (477)
170 3k9i_A BH0479 protein; putativ 98.3 6E-07 2.1E-11 73.4 6.0 83 561-643 3-90 (117)
171 3ro3_A PINS homolog, G-protein 98.3 4.1E-06 1.4E-10 72.8 11.7 129 514-642 11-157 (164)
172 2xev_A YBGF; tetratricopeptide 98.3 9.4E-06 3.2E-10 67.4 13.0 106 517-625 7-121 (129)
173 1ihg_A Cyclophilin 40; ppiase 98.3 3.6E-06 1.2E-10 84.5 12.1 137 478-636 224-363 (370)
174 1hxi_A PEX5, peroxisome target 98.3 2.6E-06 8.9E-11 70.0 8.9 98 514-614 19-119 (121)
175 3rkv_A Putative peptidylprolyl 98.3 1.7E-06 5.9E-11 75.5 8.2 79 548-626 63-144 (162)
176 2if4_A ATFKBP42; FKBP-like, al 98.3 1.1E-06 3.7E-11 87.3 7.7 148 477-644 179-329 (338)
177 2c2l_A CHIP, carboxy terminus 98.3 3.2E-06 1.1E-10 81.4 10.8 112 511-625 3-117 (281)
178 1elr_A TPR2A-domain of HOP; HO 98.3 5.4E-06 1.8E-10 68.9 10.8 111 514-627 6-125 (131)
179 3q7a_A Farnesyltransferase alp 98.2 0.00053 1.8E-08 66.7 25.4 231 384-621 62-344 (349)
180 4b4t_Q 26S proteasome regulato 98.2 9.8E-06 3.4E-10 83.8 14.0 164 479-642 57-244 (434)
181 2kck_A TPR repeat; tetratricop 98.2 5.6E-06 1.9E-10 66.6 9.6 100 512-614 6-111 (112)
182 3k9i_A BH0479 protein; putativ 98.2 1.3E-06 4.3E-11 71.5 5.5 93 525-618 3-99 (117)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 7E-06 2.4E-10 85.2 12.5 65 580-644 317-381 (457)
184 2l6j_A TPR repeat-containing p 98.2 2E-05 6.8E-10 63.3 12.6 99 579-697 3-101 (111)
185 3q7a_A Farnesyltransferase alp 98.2 0.00013 4.5E-09 70.9 20.2 211 427-642 70-330 (349)
186 2l6j_A TPR repeat-containing p 98.2 5.3E-07 1.8E-11 72.8 2.3 93 547-639 3-103 (111)
187 3ma5_A Tetratricopeptide repea 98.2 1E-05 3.5E-10 63.7 9.5 66 578-643 5-70 (100)
188 1zu2_A Mitochondrial import re 98.2 2.5E-06 8.4E-11 72.0 5.9 83 562-644 16-121 (158)
189 1ihg_A Cyclophilin 40; ppiase 98.1 9.7E-06 3.3E-10 81.3 11.2 86 579-690 272-357 (370)
190 1dce_A Protein (RAB geranylger 98.1 8.4E-05 2.9E-09 78.9 18.8 168 461-632 44-244 (567)
191 2if4_A ATFKBP42; FKBP-like, al 98.1 3.9E-06 1.3E-10 83.3 8.0 116 513-645 180-295 (338)
192 3dss_A Geranylgeranyl transfer 98.1 0.00044 1.5E-08 67.0 22.1 177 463-643 91-304 (331)
193 2kat_A Uncharacterized protein 98.1 6.5E-06 2.2E-10 66.9 7.8 78 566-643 3-82 (115)
194 2hr2_A Hypothetical protein; a 98.1 5.3E-06 1.8E-10 70.2 7.2 72 550-621 59-143 (159)
195 1na3_A Designed protein CTPR2; 98.1 1.5E-05 5.2E-10 61.2 9.0 81 548-628 9-91 (91)
196 3n71_A Histone lysine methyltr 98.1 7E-06 2.4E-10 84.9 8.5 128 522-649 319-470 (490)
197 1wao_1 Serine/threonine protei 98.1 1.1E-05 3.8E-10 84.1 10.1 92 552-643 10-103 (477)
198 3dss_A Geranylgeranyl transfer 98.1 0.0015 5.1E-08 63.2 24.0 193 427-625 90-320 (331)
199 3ro3_A PINS homolog, G-protein 98.0 1.5E-05 5.1E-10 69.1 9.2 133 479-611 11-160 (164)
200 1klx_A Cysteine rich protein B 98.0 5.5E-05 1.9E-09 63.6 11.9 112 526-645 9-128 (138)
201 4b4t_Q 26S proteasome regulato 98.0 5.4E-05 1.9E-09 78.2 14.2 158 485-642 12-203 (434)
202 1na3_A Designed protein CTPR2; 98.0 5.3E-05 1.8E-09 58.1 10.8 65 579-643 8-72 (91)
203 3bee_A Putative YFRE protein; 97.9 6.9E-05 2.4E-09 57.5 9.7 69 577-645 3-74 (93)
204 3lvg_A Clathrin heavy chain 1; 97.9 1.4E-05 4.9E-10 78.5 7.1 238 40-296 53-325 (624)
205 1zu2_A Mitochondrial import re 97.8 2.8E-05 9.5E-10 65.6 6.5 91 524-617 14-128 (158)
206 1dce_A Protein (RAB geranylger 97.8 0.00017 5.7E-09 76.6 14.1 157 490-651 42-229 (567)
207 3n71_A Histone lysine methyltr 97.8 1.5E-05 5.2E-10 82.4 5.1 117 557-691 318-452 (490)
208 2kat_A Uncharacterized protein 97.7 0.00013 4.6E-09 58.9 8.5 80 530-612 3-85 (115)
209 1klx_A Cysteine rich protein B 97.6 0.00072 2.5E-08 56.6 11.9 112 491-611 9-128 (138)
210 3qwp_A SET and MYND domain-con 97.6 0.00013 4.6E-09 74.2 8.6 115 556-688 295-427 (429)
211 2kc7_A BFR218_protein; tetratr 97.6 0.00057 1.9E-08 53.2 10.1 63 555-617 7-72 (99)
212 2kc7_A BFR218_protein; tetratr 97.5 0.00011 3.9E-09 57.4 5.9 58 587-644 7-65 (99)
213 3ma5_A Tetratricopeptide repea 97.4 0.00035 1.2E-08 54.7 6.8 64 548-611 7-72 (100)
214 3qww_A SET and MYND domain-con 97.4 0.00017 5.7E-09 73.3 6.2 82 561-642 311-410 (433)
215 1wy6_A Hypothetical protein ST 97.4 0.015 5.1E-07 46.2 15.3 142 487-647 17-158 (172)
216 3ly7_A Transcriptional activat 97.4 0.003 1E-07 61.4 14.1 68 577-645 274-341 (372)
217 3lvg_A Clathrin heavy chain 1; 97.3 9.3E-05 3.2E-09 73.0 2.6 237 142-397 53-325 (624)
218 3ly7_A Transcriptional activat 97.2 0.015 5.1E-07 56.5 16.5 141 475-618 192-347 (372)
219 3qww_A SET and MYND domain-con 97.1 0.0017 5.9E-08 65.9 10.2 94 525-618 311-425 (433)
220 1pc2_A Mitochondria fission pr 97.1 0.0019 6.3E-08 53.8 8.3 86 528-615 14-106 (152)
221 3u64_A Protein TP_0956; tetrat 97.0 0.0023 7.9E-08 59.4 9.1 87 564-650 179-276 (301)
222 3qwp_A SET and MYND domain-con 97.0 0.0035 1.2E-07 63.7 11.4 99 521-619 296-415 (429)
223 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0031 1.1E-07 49.5 8.4 75 547-621 4-87 (104)
224 1pc2_A Mitochondria fission pr 96.7 0.0071 2.4E-07 50.3 9.0 65 578-642 30-99 (152)
225 3bee_A Putative YFRE protein; 96.6 0.01 3.4E-07 45.3 8.5 67 546-612 4-75 (93)
226 1qsa_A Protein (soluble lytic 96.6 0.45 1.6E-05 50.3 23.6 115 491-608 228-347 (618)
227 2v5f_A Prolyl 4-hydroxylase su 96.3 0.036 1.2E-06 43.3 10.5 65 579-643 4-75 (104)
228 3mkq_A Coatomer beta'-subunit; 96.0 0.46 1.6E-05 53.1 21.8 166 284-502 608-774 (814)
229 1nzn_A CGI-135 protein, fissio 96.0 0.1 3.6E-06 41.6 11.3 92 526-619 15-113 (126)
230 3mkq_A Coatomer beta'-subunit; 95.9 0.067 2.3E-06 59.9 14.1 27 512-538 681-707 (814)
231 1nzn_A CGI-135 protein, fissio 95.8 0.044 1.5E-06 43.8 8.3 80 564-643 17-103 (126)
232 4gns_B Protein CSD3, chitin bi 95.7 0.088 3E-06 56.7 12.8 124 515-641 251-398 (754)
233 4h7y_A Dual specificity protei 95.6 0.034 1.2E-06 45.4 7.1 52 594-645 74-125 (161)
234 3u64_A Protein TP_0956; tetrat 95.5 0.016 5.6E-07 53.8 5.6 105 528-641 179-296 (301)
235 4h7y_A Dual specificity protei 95.0 0.17 5.9E-06 41.4 9.4 61 561-621 73-135 (161)
236 1y8m_A FIS1; mitochondria, unk 94.8 0.68 2.3E-05 37.6 12.5 65 578-642 37-105 (144)
237 3o48_A Mitochondria fission 1 94.7 0.2 6.8E-06 40.1 9.0 66 577-642 37-106 (134)
238 3mkq_B Coatomer subunit alpha; 94.6 1.2 4.1E-05 38.0 14.2 103 253-372 14-116 (177)
239 4ady_A RPN2, 26S proteasome re 94.5 7.1 0.00024 43.1 33.0 264 320-590 384-671 (963)
240 3mkq_B Coatomer subunit alpha; 93.5 3.2 0.00011 35.4 17.1 102 456-575 15-116 (177)
241 3ffl_A Anaphase-promoting comp 93.3 0.26 8.9E-06 41.3 7.5 121 506-640 12-148 (167)
242 3lpz_A GET4 (YOR164C homolog); 92.9 6.7 0.00023 37.4 19.6 171 40-237 34-215 (336)
243 2wpv_A GET4, UPF0363 protein Y 90.5 12 0.00041 35.4 23.1 166 350-541 38-217 (312)
244 2ff4_A Probable regulatory pro 90.3 0.83 2.9E-05 45.5 8.8 69 582-650 173-246 (388)
245 1wy6_A Hypothetical protein ST 90.3 6.1 0.00021 31.7 15.2 141 285-443 17-157 (172)
246 2wpv_A GET4, UPF0363 protein Y 90.3 12 0.00043 35.3 19.4 166 247-438 36-215 (312)
247 1y8m_A FIS1; mitochondria, unk 89.9 2.5 8.5E-05 34.3 9.4 74 545-618 36-115 (144)
248 3o48_A Mitochondria fission 1 89.8 1 3.6E-05 36.0 7.0 74 545-618 37-116 (134)
249 3ffl_A Anaphase-promoting comp 89.7 1.7 5.9E-05 36.4 8.6 27 550-576 124-150 (167)
250 1qsa_A Protein (soluble lytic 89.5 23 0.0008 37.3 35.8 227 390-634 228-470 (618)
251 3lpz_A GET4 (YOR164C homolog); 88.8 17 0.00057 34.7 24.1 165 350-540 40-215 (336)
252 4b4t_P 26S proteasome regulato 87.4 26 0.00089 35.3 17.8 186 389-575 29-245 (445)
253 1v54_E Cytochrome C oxidase po 86.7 5 0.00017 30.2 8.4 63 492-556 25-87 (109)
254 2p58_C Putative type III secre 86.6 6 0.0002 29.6 8.6 86 223-313 21-106 (116)
255 3txn_A 26S proteasome regulato 86.4 18 0.00062 35.6 15.1 57 518-574 105-165 (394)
256 2uwj_G Type III export protein 86.1 5.6 0.00019 29.7 8.2 87 223-314 20-106 (115)
257 4ady_A RPN2, 26S proteasome re 85.6 49 0.0017 36.7 38.6 251 351-607 380-656 (963)
258 4fhn_B Nucleoporin NUP120; pro 85.5 8.9 0.00031 44.4 14.5 59 516-574 903-964 (1139)
259 3txn_A 26S proteasome regulato 85.1 28 0.00096 34.2 15.7 89 553-641 104-208 (394)
260 2ff4_A Probable regulatory pro 83.5 6.2 0.00021 39.1 10.5 72 480-552 174-249 (388)
261 1zbp_A Hypothetical protein VP 83.2 13 0.00043 34.1 11.3 121 486-617 6-137 (273)
262 4gns_B Protein CSD3, chitin bi 83.2 5.4 0.00018 43.1 10.4 52 521-575 346-398 (754)
263 3esl_A Checkpoint serine/threo 82.6 13 0.00046 32.2 10.7 55 593-647 92-148 (202)
264 2uwj_G Type III export protein 81.5 14 0.00048 27.6 8.7 86 122-212 20-105 (115)
265 2y69_E Cytochrome C oxidase su 80.8 10 0.00036 30.2 8.4 63 493-557 69-131 (152)
266 1zbp_A Hypothetical protein VP 80.1 4.5 0.00015 37.0 7.2 58 556-613 5-64 (273)
267 1v54_E Cytochrome C oxidase po 80.0 11 0.00037 28.4 7.8 62 190-252 26-87 (109)
268 4fhn_B Nucleoporin NUP120; pro 78.7 31 0.0011 39.8 15.7 83 549-632 900-989 (1139)
269 4b4t_P 26S proteasome regulato 78.0 61 0.0021 32.6 22.3 175 358-534 29-240 (445)
270 2p58_C Putative type III secre 75.3 23 0.0008 26.5 9.8 59 455-516 49-107 (116)
271 4a1g_A Mitotic checkpoint seri 74.8 25 0.00086 29.0 9.6 49 599-647 84-134 (152)
272 1wdy_A 2-5A-dependent ribonucl 73.9 50 0.0017 30.2 13.5 21 288-308 192-212 (285)
273 4b4t_R RPN7, 26S proteasome re 72.9 12 0.00042 37.6 9.1 59 550-608 133-196 (429)
274 2y69_E Cytochrome C oxidase su 70.5 23 0.00077 28.4 7.8 60 192-252 71-130 (152)
275 2wvi_A Mitotic checkpoint seri 70.1 36 0.0012 28.5 9.7 49 599-647 79-129 (164)
276 3ltj_A Alpharep-4; protein eng 69.2 55 0.0019 28.2 17.5 48 142-189 27-74 (201)
277 3eiq_C Programmed cell death p 67.9 45 0.0015 32.2 11.2 64 450-513 221-289 (358)
278 1wdy_A 2-5A-dependent ribonucl 67.3 47 0.0016 30.4 11.6 116 45-170 6-129 (285)
279 4b4t_R RPN7, 26S proteasome re 66.2 18 0.00062 36.3 8.7 95 448-542 133-238 (429)
280 2qx5_A Nucleoporin NIC96; mRNA 65.9 1.1E+02 0.0037 32.5 14.6 42 179-221 157-198 (661)
281 3ltm_A Alpha-REP4; protein eng 65.4 69 0.0023 27.8 19.5 146 452-608 39-184 (211)
282 1k1a_A B-cell lymphoma 3-encod 63.3 44 0.0015 29.7 10.2 20 119-138 17-36 (241)
283 3ltj_A Alpharep-4; protein eng 63.1 73 0.0025 27.4 20.1 147 451-608 33-179 (201)
284 3bqo_A Telomeric repeat-bindin 58.9 20 0.00068 30.7 6.0 72 564-635 94-172 (211)
285 1n11_A Ankyrin; clathrin, BAND 56.9 1.5E+02 0.005 29.4 13.8 205 46-269 16-234 (437)
286 3kea_A K1L; tropism, ANK repea 56.3 68 0.0023 29.7 10.4 12 256-267 138-149 (285)
287 3esl_A Checkpoint serine/threo 56.1 95 0.0032 26.9 9.9 53 493-546 95-148 (202)
288 3ltm_A Alpha-REP4; protein eng 56.0 1E+02 0.0034 26.7 19.3 19 474-492 123-141 (211)
289 1k1a_A B-cell lymphoma 3-encod 55.9 79 0.0027 28.0 10.6 84 183-270 15-102 (241)
290 1ya0_A SMG-7 transcript varian 54.6 39 0.0013 34.5 8.7 59 584-642 156-214 (497)
291 3hra_A Ankyrin repeat family p 54.2 99 0.0034 26.3 10.6 149 153-309 12-172 (201)
292 3eu9_A Huntingtin-interacting 51.3 58 0.002 28.8 8.8 19 151-169 47-65 (240)
293 2nsz_A Programmed cell death p 50.3 93 0.0032 24.7 8.6 62 248-309 11-77 (129)
294 3jxi_A Vanilloid receptor-rela 49.5 46 0.0016 30.1 7.9 89 181-270 9-116 (260)
295 4aez_C MAD3, mitotic spindle c 49.0 49 0.0017 29.3 7.2 49 598-646 132-182 (223)
296 2qx5_A Nucleoporin NIC96; mRNA 48.8 2.7E+02 0.0092 29.5 15.1 35 181-219 301-335 (661)
297 3ljn_A Hypothetical protein; a 42.0 79 0.0027 30.4 8.7 50 153-202 60-109 (364)
298 4b4t_S RPN3, 26S proteasome re 41.2 53 0.0018 33.4 7.0 66 548-613 231-303 (523)
299 2ion_A PDCD4, programmed cell 41.1 88 0.003 25.8 7.3 62 248-309 13-79 (152)
300 2ion_A PDCD4, programmed cell 40.9 1.5E+02 0.0051 24.3 8.9 66 348-413 12-82 (152)
301 3b7b_A Euchromatic histone-lys 40.7 1.2E+02 0.0042 26.6 9.2 22 317-338 214-235 (237)
302 2nsz_A Programmed cell death p 38.6 1.5E+02 0.005 23.5 10.0 65 349-413 11-80 (129)
303 3eiq_C Programmed cell death p 37.3 2.9E+02 0.0099 26.6 14.2 67 348-414 220-291 (358)
304 4a1g_A Mitotic checkpoint seri 37.1 1.7E+02 0.0059 24.0 9.3 52 494-546 82-134 (152)
305 3eu9_A Huntingtin-interacting 36.8 1.8E+02 0.0061 25.4 9.7 108 153-269 16-131 (240)
306 2d2s_A Exocyst complex compone 36.4 1.2E+02 0.004 27.2 7.9 22 180-201 24-45 (235)
307 1oyz_A Hypothetical protein YI 35.8 2.5E+02 0.0086 25.4 20.8 244 62-322 27-279 (280)
308 2r9g_A AAA ATPase, central reg 35.1 2.2E+02 0.0075 24.6 9.0 62 281-343 17-86 (204)
309 3ygs_P Procaspase 9; apoptosis 34.7 87 0.003 23.3 5.8 38 258-295 51-88 (97)
310 3hra_A Ankyrin repeat family p 33.9 1.6E+02 0.0056 24.8 8.6 18 50-67 11-28 (201)
311 3kea_A K1L; tropism, ANK repea 33.7 2.8E+02 0.0095 25.3 11.0 19 216-234 165-183 (285)
312 3bu8_A Telomeric repeat-bindin 32.3 50 0.0017 28.8 4.3 49 528-576 88-142 (235)
313 2wvi_A Mitotic checkpoint seri 31.7 2.2E+02 0.0077 23.7 9.6 52 495-547 78-130 (164)
314 4gq2_M Nucleoporin NUP120; bet 30.3 3.5E+02 0.012 30.3 12.2 28 582-609 899-926 (950)
315 2r9g_A AAA ATPase, central reg 30.0 2.7E+02 0.0092 24.0 9.1 62 381-443 16-85 (204)
316 4b4t_S RPN3, 26S proteasome re 29.8 1.1E+02 0.0036 31.3 7.1 64 513-576 232-298 (523)
317 2d2s_A Exocyst complex compone 29.6 2.4E+02 0.0082 25.2 8.8 21 282-302 25-45 (235)
318 1wgl_A TOLL-interacting protei 29.5 51 0.0017 21.9 3.2 49 600-649 10-58 (59)
319 2fu4_A Ferric uptake regulatio 29.0 1.5E+02 0.005 20.9 6.1 61 198-259 6-67 (83)
320 3t8k_A Uncharacterized protein 28.5 2.7E+02 0.0091 23.5 9.7 89 154-243 14-108 (186)
321 4gq2_M Nucleoporin NUP120; bet 28.2 2.6E+02 0.009 31.3 10.8 52 47-99 816-867 (950)
322 4ets_A Ferric uptake regulatio 27.3 1.5E+02 0.0051 24.6 6.6 71 88-159 13-85 (162)
323 3jxi_A Vanilloid receptor-rela 27.0 1.3E+02 0.0045 26.9 7.0 27 116-142 10-36 (260)
324 1ug3_A EIF4GI, eukaryotic prot 26.3 2.9E+02 0.01 26.3 9.4 61 349-409 15-79 (339)
325 2zu6_B Programmed cell death p 26.0 4.1E+02 0.014 24.8 12.7 216 348-565 6-254 (307)
326 3mv2_A Coatomer subunit alpha; 26.0 4.2E+02 0.014 24.9 13.7 50 580-643 207-256 (325)
327 1bd8_A P19INK4D CDK4/6 inhibit 26.0 1.3E+02 0.0045 24.1 6.2 7 258-264 112-118 (156)
328 3bu8_A Telomeric repeat-bindin 25.6 2.2E+02 0.0075 24.9 7.1 47 493-539 88-141 (235)
329 2rfa_A Transient receptor pote 25.5 3.3E+02 0.011 23.5 11.0 16 153-168 10-25 (232)
330 3aji_A 26S proteasome non-ATPa 25.5 2.3E+02 0.0079 24.5 8.3 15 153-167 13-27 (231)
331 3b7b_A Euchromatic histone-lys 24.5 2.1E+02 0.007 25.0 7.8 72 231-303 159-235 (237)
332 3ctd_A Putative ATPase, AAA fa 24.0 3.6E+02 0.012 23.5 8.2 89 382-471 38-134 (213)
333 3t5v_B Nuclear mRNA export pro 23.3 58 0.002 32.7 3.8 93 8-100 143-248 (455)
334 3bge_A Predicted ATPase; struc 23.1 2.7E+02 0.0094 23.9 7.2 44 281-324 10-56 (201)
335 1ug3_A EIF4GI, eukaryotic prot 23.0 1.9E+02 0.0064 27.6 7.3 59 248-306 15-77 (339)
336 1oai_A Nuclear RNA export fact 22.4 58 0.002 21.7 2.4 25 85-109 33-57 (59)
337 2ijq_A Hypothetical protein; s 22.1 3.3E+02 0.011 22.6 7.5 51 559-609 43-104 (161)
338 2crb_A Nuclear receptor bindin 22.1 1.1E+02 0.0036 22.5 3.8 25 616-640 17-41 (97)
339 3bge_A Predicted ATPase; struc 22.0 2.8E+02 0.0095 23.9 7.1 44 382-425 10-56 (201)
340 3bqo_A Telomeric repeat-bindin 21.9 3E+02 0.01 23.7 7.1 45 57-101 94-146 (211)
341 2fe3_A Peroxide operon regulat 21.2 2.1E+02 0.0073 23.0 6.4 37 526-563 35-71 (145)
342 2etb_A Transient receptor pote 21.1 93 0.0032 27.9 4.6 28 115-142 6-33 (256)
343 2fe3_A Peroxide operon regulat 20.9 1.6E+02 0.0055 23.8 5.5 60 200-260 13-72 (145)
344 3l6a_A Eukaryotic translation 20.9 4.9E+02 0.017 25.0 9.8 27 450-476 16-42 (364)
345 2p1h_A APAF-1, apoptotic prote 20.8 2.5E+02 0.0085 20.5 6.5 61 229-293 25-85 (94)
346 3ygs_P Procaspase 9; apoptosis 20.8 1E+02 0.0036 22.9 3.9 37 460-496 51-87 (97)
347 2qfz_A TBC1 domain family memb 20.8 3.5E+02 0.012 25.8 8.8 79 397-475 230-315 (345)
348 1bd8_A P19INK4D CDK4/6 inhibit 20.7 2.3E+02 0.0079 22.5 6.7 16 184-199 9-24 (156)
349 1wty_A Hypothetical protein TT 20.7 2.2E+02 0.0076 22.0 6.1 68 492-565 3-70 (119)
350 3ljn_A Hypothetical protein; a 20.1 1.7E+02 0.0058 28.0 6.6 14 356-369 181-194 (364)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-41 Score=368.06 Aligned_cols=502 Identities=7% Similarity=-0.067 Sum_probs=360.0
Q ss_pred HHHHccCChHHHHHHhhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhh
Q 005317 49 KHLVKSGYLHDARKMFDTMTQRDEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGE 128 (702)
Q Consensus 49 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 128 (702)
..+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|+++.. ..|+..++..++.+|...|++++|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 3456778888889999988888999999999999999999999999999983 4778899999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCC-------------------CcchHHHHHHHHHhCCC
Q 005317 129 SLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLR-------------------NVVSWTAIITGLVRAGH 189 (702)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~ 189 (702)
.+++.+... ++++.+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999987644 688999999999999999999999999965433 37899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHH--HHH-HHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHH
Q 005317 190 NKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFG--REI-HTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRL 266 (702)
Q Consensus 190 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 266 (702)
+++|++.|++|.+.+ +.+...+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++
T Consensus 216 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 216 FDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 999999999998753 22344455554444433322221 111 44444445555566777788899999999999999
Q ss_pred HhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc
Q 005317 267 FERMST--RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDS 344 (702)
Q Consensus 267 ~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 344 (702)
|+++.+ ++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++..+...|++++|..+++.+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999886 788899999999999999999999999998765 3467788888888888888888888888887553 344
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005317 345 LSVANSIMAMYSKCGQLTSTSIVFHGMI---RRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVC 421 (702)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 421 (702)
..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------- 437 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--------------- 437 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 5555555555555555555555554432 1233344444444444444444444444443321
Q ss_pred cccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005317 422 GNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFE 501 (702)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (702)
..+..+|+.++.+|.+.|++++|.++|+
T Consensus 438 ----------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 438 ----------------------------------------------------QGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp ----------------------------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1234455566666666666677777776
Q ss_pred HchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005317 502 KVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKY---GFVPS--KEHYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 502 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++..
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 666542 3456677777777777777777777777775432 44666 67888888888888888888888888766
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh
Q 005317 577 --QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAA 626 (702)
Q Consensus 577 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 626 (702)
+++..+|..++.+|...|++++|.+.++++++++|+++..+..++.+|..
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 44788999999999999999999999999999999999999999988753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-40 Score=364.78 Aligned_cols=480 Identities=12% Similarity=0.002 Sum_probs=400.2
Q ss_pred hhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 005317 153 YTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIH 232 (702)
Q Consensus 153 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 232 (702)
+.+.|.+..+...+..++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45667788888888888888999999999999999999999999999985 5678899999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCC-------------------CcchHHHHHHHHHhcCChhH
Q 005317 233 TIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTR-------------------DVISWTTIITSYVQMGEEEN 293 (702)
Q Consensus 233 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 293 (702)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 988654 788899999999999999999999999965433 37899999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCchHH--HHHH-HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHh
Q 005317 294 AFDAFVRMQESDVKPN-EYTFAAIISASANLARIQW--GEQL-HAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFH 369 (702)
Q Consensus 294 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 369 (702)
|.+.|++|.+.+ |+ ...+..+...+...+..+. +..+ +..+...+..+...+++.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999999864 44 3444444443333322221 1111 4444444445556677888899999999999999999
Q ss_pred cCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChh
Q 005317 370 GMIR--RDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAM 447 (702)
Q Consensus 370 ~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 447 (702)
++.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+. .+..++..++.++.+.|+.++|..+++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9977 7899999999999999999999999999998653 366788999999999999999999999998654 45788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhc
Q 005317 448 IKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSH 524 (702)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 524 (702)
+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999875 4578899999999999999999999999999763 4577899999999999
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC--HHHHHHHHHHHHhcCC
Q 005317 525 AGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-------QKD--DVVWSTLLRACMVQGD 595 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~p~--~~~~~~l~~~~~~~g~ 595 (702)
.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++.. .|+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999865 233588999999999999999999999998844 465 6799999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 596 VNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 596 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
+++|++.++++++.+|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999874
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=5.9e-26 Score=234.06 Aligned_cols=350 Identities=15% Similarity=0.133 Sum_probs=174.1
Q ss_pred HhhhCCChHHHHHHHhccC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHH
Q 005317 253 MYSKCGKLDYSLRLFERMS--TR-DVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWG 329 (702)
Q Consensus 253 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 329 (702)
.+.+.|++++|.+.++.+. .| +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3444555555555554442 12 22334444444555555555555555544432 23344455555555555555555
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 005317 330 EQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRP 409 (702)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 409 (702)
...|+.+.+.. +.+...+..+...+.+.|++++|.+.| +++.+. .|
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~al~~--~p 132 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAY-------------------------------VSALQY--NP 132 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHH-------------------------------HHHHHH--CT
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHH-------------------------------HHHHHh--CC
Confidence 55555554432 222334444445555555555555444 444442 12
Q ss_pred C-HHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHH
Q 005317 410 N-EFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMIN 485 (702)
Q Consensus 410 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 485 (702)
+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...|+++. +.+...|..+..
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 211 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 2 1223333344444444444444444444432 1123344445555555555555555555443 223445555555
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCH
Q 005317 486 GYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRL 564 (702)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 564 (702)
.+...|++++|+..|++..... +.+..++..+...+...|++++|.+.|+++.+. .|+ ..+|..++.++.+.|++
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCH
Confidence 5555555555555555555421 123345555555555555555555555555432 333 44555555555555555
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 565 SDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 565 ~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
++|...++++.. +++..++..++..+...|++++|+..++++++..|+++..+..++.+|.+.|++++|...++++.+
T Consensus 288 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555544 334555555555555556666666666665555555555555566666666666666665555543
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.4e-25 Score=231.38 Aligned_cols=373 Identities=12% Similarity=0.117 Sum_probs=295.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccC---CCCcchHHHHHHHHHhcCCh
Q 005317 215 VLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMS---TRDVISWTTIITSYVQMGEE 291 (702)
Q Consensus 215 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 291 (702)
+...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++... ..+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3455678899999999999998874 4556677778888999999999999998765 34677899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 005317 292 ENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGM 371 (702)
Q Consensus 292 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 371 (702)
++|.+.|+++.+.. +.+..+|..+...+...|++++|.+.+..+.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998853 3345578999999999999999999999998874 334455556666666666666666666655
Q ss_pred CC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhH
Q 005317 372 IR---RDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMI 448 (702)
Q Consensus 372 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 448 (702)
.+ .+..+|..+...+...|++++|...|+++.+.+ |+ +...
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~----------------------------------~~~~ 205 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN----------------------------------FLDA 205 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----------------------------------cHHH
Confidence 22 234556666666666666666666666665532 21 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhcc
Q 005317 449 KSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHA 525 (702)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 525 (702)
+..+...+...|++++|...|++.. +.+..++..+..++...|++++|++.|+++.+.+ +.+..++..+...+...
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Confidence 4455666666777777777766543 3467788889999999999999999999998753 33567899999999999
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005317 526 GLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTA 603 (702)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~ 603 (702)
|++++|.+.|+++.+. .+.+..++..++.++.+.|++++|...++++.. +.+..++..++..+...|++++|...+
T Consensus 285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999865 244588999999999999999999999999887 445789999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHhcCC
Q 005317 604 EKILELHPSCAGTHITLANIYAAKGR 629 (702)
Q Consensus 604 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 629 (702)
+++++++|+++..|..++.++...|+
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999988764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.4e-27 Score=247.97 Aligned_cols=209 Identities=12% Similarity=0.093 Sum_probs=151.0
Q ss_pred HHHHHHHhhhCCCCCCCH-HHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccC
Q 005317 91 ALALFSRVWVEPQMNMDP-FILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEM 169 (702)
Q Consensus 91 a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 169 (702)
+..+.+++.+. +..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 9 SENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred HHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 33444555544 554444 468888999999999999999999999999999999999999999887764332
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 005317 170 PLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANS 249 (702)
Q Consensus 170 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 249 (702)
.+.+..++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12355788999999999999999999999999999999999999999999999999888888777
Q ss_pred HHHHhhhCCChHHHHHHHhccC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 005317 250 LATMYSKCGKLDYSLRLFERMS----TRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASAN 322 (702)
Q Consensus 250 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 322 (702)
+|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|++.|..|+..||+.++..++.
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777766666666666653 355566666666666666666666666666666666666666666655544
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.7e-27 Score=245.81 Aligned_cols=210 Identities=12% Similarity=0.073 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhcc
Q 005317 192 EGLIYFAEMWRSKEQGDSY-TFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERM 270 (702)
Q Consensus 192 ~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 270 (702)
.+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3455667777777766554 57888999999999999999999999999999999999999999887764321
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHH
Q 005317 271 STRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANS 350 (702)
Q Consensus 271 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (702)
.+.+.++.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23455678888899998889999999999999999999999999999999988888888887777
Q ss_pred HHHHHHhcCCHHHHHHHHhcC----CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc
Q 005317 351 IMAMYSKCGQLTSTSIVFHGM----IRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGN 423 (702)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 423 (702)
+|.+|++.|++++|.++|++| ..||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777776666666666 3456666777777777777777777777777777777777777777766654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.9e-23 Score=222.64 Aligned_cols=438 Identities=11% Similarity=-0.026 Sum_probs=256.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 005317 176 SWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYS 255 (702)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 255 (702)
.|..+...+.+.|++++|+..|+++.+.. |+...+..+..++...|++++|.+.++.+.+.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 44555566677777777777777776643 566667777777777777777777777776664 344455666666666
Q ss_pred hCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHH
Q 005317 256 KCGKLDYSLRLFERMST---RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQL 332 (702)
Q Consensus 256 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 332 (702)
+.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------ 152 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK------------ 152 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH------------
Confidence 66666666666665531 222333333333333222222322222222222112211111100000
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhhHHHHHHHHHc---CCChHHHHHHHHHHHH----
Q 005317 333 HAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRR-DIISWSTIIGGYSQ---GGYEEEAFEYLALMRR---- 404 (702)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~---- 404 (702)
......|+...... +.......... ..+..+ +...+......+.. .|++++|...|+++.+
T Consensus 153 ----~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 153 ----DKQENLPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------CCCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ----hhccCCchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 00001111111111 11100000000 001111 23333334443333 6677777777777665
Q ss_pred -CCCC--------CCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Q 005317 405 -EGPR--------PNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES- 474 (702)
Q Consensus 405 -~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 474 (702)
.... .+...+..+...+...|+++.|...++.+.+.... ...+..+...+...|++++|...|+++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 2111 12335555666667777777777777777766544 66666777777777777777777776542
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhH
Q 005317 475 --DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHY 551 (702)
Q Consensus 475 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~ 551 (702)
.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+. .| +...+
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~ 375 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVP 375 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHH
Confidence 356677777888888888888888888877643 334567777777788888888888888887654 33 36677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CC---C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCchhHHHH
Q 005317 552 GCMIDLLCRAGRLSDAENMIENMPH-QK---D----DVVWSTLLRACMV---QGDVNCGRHTAEKILELHPSCAGTHITL 620 (702)
Q Consensus 552 ~~l~~~~~~~g~~~~A~~~~~~~~~-~p---~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l 620 (702)
..++..+.+.|++++|...++++.. .| . ...+..++..+.. .|++++|...++++++.+|+++..+..+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 7788888888888888888877655 12 1 3377778888888 8888888888888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 005317 621 ANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
+.+|.+.|++++|...++++.+..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 8888888888888888888776544
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.9e-23 Score=221.67 Aligned_cols=404 Identities=10% Similarity=-0.014 Sum_probs=285.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccC---CCCcchHHHHHHHHHh
Q 005317 211 TFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMS---TRDVISWTTIITSYVQ 287 (702)
Q Consensus 211 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 287 (702)
.+......+...|++++|...|+.+.+.. |+...+..+..+|.+.|++++|...|+++. ..+..+|..+..++..
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45556677788899999999999998875 688888888889999999999998888765 2355678888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 005317 288 MGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIV 367 (702)
Q Consensus 288 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 367 (702)
.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+......-. + .
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~-------~ 151 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK------E-------R 151 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh------H-------H
Confidence 999999999998888775 3444444444444443333333333333322222111111110000 0 0
Q ss_pred HhcC-CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHc---ccCcHHHHHHHHHHHHH---
Q 005317 368 FHGM-IRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPN-EFAFASVLSVCG---NMAILEQGKQIHAHVMS--- 439 (702)
Q Consensus 368 ~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~--- 439 (702)
.... ..++.......+..+...... . .. ..|+ ...+......+. +.|+++.|...++.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 220 (514)
T 2gw1_A 152 KDKQENLPSVTSMASFFGIFKPELTF----A------NY-DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220 (514)
T ss_dssp -----CCCCHHHHHHHHTTSCCCCCC----S------SC-CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCchhHHHHHHHhhcCHHHHH----H------Hh-cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence 0000 001111111111100000000 0 00 0122 333333333333 48999999999999988
Q ss_pred --hCC--------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCC
Q 005317 440 --IGL--------ERTAMIKSALINMYSKCGSIKEASQIFYETE--SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVG 507 (702)
Q Consensus 440 --~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (702)
..- +.+...+..+...+...|++++|...|+++. .|+...+..+..++...|++++|...++++.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp HHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred hhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 311 2235677889999999999999999999875 3447889999999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHH
Q 005317 508 LRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWS 584 (702)
Q Consensus 508 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~ 584 (702)
+.+...+..+...+...|++++|...|+.+.+. .| +...+..++..+...|++++|...++++.. +.+...+.
T Consensus 301 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 376 (514)
T 2gw1_A 301 -SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL---DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPN 376 (514)
T ss_dssp -TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT---CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHH
Confidence 446678889999999999999999999999754 44 478899999999999999999999999876 44677899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCch------hHHHHHHHHHh---cCChHHHHHHHHHHHhCCC
Q 005317 585 TLLRACMVQGDVNCGRHTAEKILELHPSCAG------THITLANIYAA---KGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 585 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 645 (702)
.++..+...|++++|...++++++..|.++. .+..++.++.. .|++++|...++++.+..+
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999988866 99999999999 9999999999999987543
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.8e-21 Score=209.98 Aligned_cols=423 Identities=12% Similarity=0.027 Sum_probs=251.2
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005317 174 VVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATM 253 (702)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 253 (702)
...|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+.+.+ +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456667777788888888888888877653 3456677777777778888888888888887765 4456667777777
Q ss_pred hhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCChhhHHHHHHHHHccCchH
Q 005317 254 YSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESD------VKPNEYTFAAIISASANLARIQ 327 (702)
Q Consensus 254 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~ 327 (702)
+...|++++|...|+.+. .++...+..+..+...+....|...++++.... ..|+....
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~-------------- 167 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL-------------- 167 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH--------------
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH--------------
Confidence 777778877777776442 222222233344444555566777777664431 12222221
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---hHHHHHHHHHc--------CCChHHHH
Q 005317 328 WGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDII---SWSTIIGGYSQ--------GGYEEEAF 396 (702)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~a~ 396 (702)
..+....+.+.+...+......+.. ....+...+.. .|++++|.
T Consensus 168 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 168 -------------------------ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp -------------------------HHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 1222233333333333333222111 12222222111 13455555
Q ss_pred HHHHHHHHCCCCCC------HHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 005317 397 EYLALMRREGPRPN------EFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFY 470 (702)
Q Consensus 397 ~~~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 470 (702)
.+++++.+...... ..++..+...+...|+++.|...++.+.+.... ...+..+...+...|++++|...|+
T Consensus 223 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55555554321110 112333444455556666666666665554322 4555556666666666666666666
Q ss_pred hCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC
Q 005317 471 ETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS 547 (702)
Q Consensus 471 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 547 (702)
++. ..+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.++++++.+. .|+
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~ 376 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPT 376 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 543 2355667777777777777777777777776642 233456777777777777777777777777654 343
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C---C----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHH
Q 005317 548 -KEHYGCMIDLLCRAGRLSDAENMIENMPH-Q---K----DDVVWSTLLRACMVQ----------GDVNCGRHTAEKILE 608 (702)
Q Consensus 548 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~---p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 608 (702)
...+..++.++...|++++|...++++.. . + ....+..+...+... |++++|+..++++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 66777777777777888777777777654 1 1 112234445566666 888888888888888
Q ss_pred hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 609 LHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 609 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
.+|+++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 888888888888888888888888888888777643
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=5e-21 Score=201.49 Aligned_cols=335 Identities=11% Similarity=0.075 Sum_probs=241.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 005317 274 DVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMA 353 (702)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 353 (702)
+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44567777777777777777777777777642 3456666666777777777777777777776654 333455555555
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---Ch---hhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcH
Q 005317 354 MYSKCGQLTSTSIVFHGMIRR---DI---ISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAIL 427 (702)
Q Consensus 354 ~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 427 (702)
.|.+.|++++|...|+++.+. +. ..+..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 555555555555555555322 11 3333332221100 011123335566777
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHch
Q 005317 428 EQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVP 504 (702)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (702)
+.|...++.+.+.. +.+...+..++.+|.+.|++++|...|+++. +.+..+|..++.+|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777776654 2356677778888888888888888888765 3577889999999999999999999999988
Q ss_pred hCCCCCCH-HHHHHH------------HHHHhccCcHHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHH
Q 005317 505 MVGLRPDS-VTFMGV------------LTACSHAGLVDLGFHYFNLMSDKYGFVPS-----KEHYGCMIDLLCRAGRLSD 566 (702)
Q Consensus 505 ~~g~~p~~-~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~ 566 (702)
.. .|+. ..+..+ ...|...|++++|.++|+.+.+. .|+ ...+..++.++.+.|++++
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 64 4443 344444 78889999999999999999865 455 4578889999999999999
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHH------------HHhcC----
Q 005317 567 AENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANI------------YAAKG---- 628 (702)
Q Consensus 567 A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g---- 628 (702)
|...++++.. +.+..+|..++.+|...|++++|...++++++++|+++..+..++.+ |...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 9999999876 44688999999999999999999999999999999999999999944 55555
Q ss_pred -ChHHHHHHHHH
Q 005317 629 -RWREAAEVRKM 639 (702)
Q Consensus 629 -~~~~A~~~~~~ 639 (702)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 56677777776
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.8e-20 Score=202.17 Aligned_cols=235 Identities=8% Similarity=-0.033 Sum_probs=176.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005317 381 TIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCG 460 (702)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 460 (702)
.+...+...|++++|...|+++.+. .|+...+..+...+...|+++.|...+..+.+... .+..++..+...+...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcC
Confidence 3445556666667777777666663 34455666666677777777777777777666542 34566777888888888
Q ss_pred CHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 005317 461 SIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNL 537 (702)
Q Consensus 461 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 537 (702)
++++|...|+++. +.+...|..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888888765 3456788889999999999999999999988753 44556888889999999999999999999
Q ss_pred hHHhhCCCCC----hhhHHHHHHHHHhc----------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 005317 538 MSDKYGFVPS----KEHYGCMIDLLCRA----------GRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRH 601 (702)
Q Consensus 538 ~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 601 (702)
+.+...-.++ ...+..+..++.+. |++++|...|+++.. +.+..++..++..+...|++++|.+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 8765211111 22244556777888 999999999999876 4467889999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHH
Q 005317 602 TAEKILELHPSCAGTHIT 619 (702)
Q Consensus 602 ~~~~~~~~~p~~~~~~~~ 619 (702)
.+++++++.|.+......
T Consensus 484 ~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 484 LFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHH
Confidence 999999999987766543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=2.3e-20 Score=196.41 Aligned_cols=307 Identities=11% Similarity=0.031 Sum_probs=242.3
Q ss_pred CChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHH
Q 005317 308 PNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR---RDIISWSTIIG 384 (702)
Q Consensus 308 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~ 384 (702)
.+...+..+...+.+.|++++|..+|+.+.+.. +.+...+..+..+|...|++++|+..|+++.+ .+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 345566677777777888888888888777653 44567777777777777888877777777632 24567777777
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005317 385 GYSQGGYEEEAFEYLALMRREGPRPNE----FAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCG 460 (702)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 460 (702)
.|.+.|++++|...|+++.+. .|+. ..+..+...+.. ..+..+...+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 777777777777777777663 3433 333333322111 11223456688899
Q ss_pred CHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 005317 461 SIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNL 537 (702)
Q Consensus 461 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 537 (702)
++++|...|+++. +.+...+..++.+|...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.|+.
T Consensus 158 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999875 4578899999999999999999999999998753 45678999999999999999999999999
Q ss_pred hHHhhCCCCC-hhhHHHH------------HHHHHhcCCHHHHHHHHHhCCC-CCC-----HHHHHHHHHHHHhcCCHHH
Q 005317 538 MSDKYGFVPS-KEHYGCM------------IDLLCRAGRLSDAENMIENMPH-QKD-----DVVWSTLLRACMVQGDVNC 598 (702)
Q Consensus 538 ~~~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~-~p~-----~~~~~~l~~~~~~~g~~~~ 598 (702)
+.+. .|+ ...+..+ +..+.+.|++++|...|+++.. .|+ ...+..++..+.+.|++++
T Consensus 237 ~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 237 CLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 9854 565 4445444 8899999999999999999877 454 4478889999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 599 GRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 599 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
|+..++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998743
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=1.4e-16 Score=175.96 Aligned_cols=574 Identities=12% Similarity=0.092 Sum_probs=386.1
Q ss_pred HHHHHHHhhccCccccccccccCcccCchhhhhHHHHHHccCChHHHHHHhhcCCC---------------C--------
Q 005317 14 FASSAIACTERRPLLLFQGTQLPVYVSTPEVNSQLKHLVKSGYLHDARKMFDTMTQ---------------R-------- 70 (702)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------~-------- 70 (702)
+..++.+=..-+-+.+++|.-.+..-+..+....|.+.++.|.+.+..++..+-.- +
T Consensus 698 li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~v 777 (1630)
T 1xi4_A 698 LIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIV 777 (1630)
T ss_pred HHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceee
Confidence 44444444444555666887777777888999999999999999998888866321 1
Q ss_pred -Ccch-HHH------------HHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHH-------------HHhhccCC
Q 005317 71 -DEIS-WTT------------LISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLAL-------------KACALNVN 123 (702)
Q Consensus 71 -~~~~-~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll-------------~~~~~~~~ 123 (702)
|..- ..- .|.+|.+.-++..+-.+...+. ++.-+...-..++ ..+-+.++
T Consensus 778 Cdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~ll---d~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnr 854 (1630)
T 1xi4_A 778 CDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLL---DVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNR 854 (1630)
T ss_pred ccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhh---cCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 1111 111 2333333333333222222222 1112222222233 33334444
Q ss_pred chhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHH-HHH---hccC------CCCCcc----------hHHHHHHH
Q 005317 124 VNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELG-CRV---FDEM------PLRNVV----------SWTAIITG 183 (702)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~---~~~~------~~~~~~----------~~~~li~~ 183 (702)
+.....+++..+..| ..++.++|+|...|...++-.+. +.- ++.. .++|+. .-..||..
T Consensus 855 Lkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~v 933 (1630)
T 1xi4_A 855 LKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINV 933 (1630)
T ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHH
Confidence 444555566666777 56889999999999966542222 110 0000 011211 12234444
Q ss_pred HHhCCChHHH-HHH-----------------------HHHHHHC--CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005317 184 LVRAGHNKEG-LIY-----------------------FAEMWRS--KEQGDSYTFAIVLKASADSGALNFGREIHTIMLK 237 (702)
Q Consensus 184 ~~~~~~~~~a-~~~-----------------------~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 237 (702)
.-+++-++.. .-+ .++-... .-..|+.-.....++|...|.+.+|.++++...-
T Consensus 934 t~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl 1013 (1630)
T 1xi4_A 934 CNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVL 1013 (1630)
T ss_pred HhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 4333333221 111 1111110 1123444455677888889999999999998884
Q ss_pred hC--CCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 005317 238 RG--FDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAA 315 (702)
Q Consensus 238 ~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 315 (702)
.+ +..+....+.|+.+..+. +..+..++.++...-+ ...+...+...|.+++|..+|++.. -.....+.
T Consensus 1014 ~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~V 1084 (1630)
T 1xi4_A 1014 DNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQV 1084 (1630)
T ss_pred CCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHH
Confidence 32 113345566677777666 5566666666655333 4557778888999999999999852 11122222
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHH
Q 005317 316 IISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEA 395 (702)
Q Consensus 316 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 395 (702)
++. ..+++++|.++.... .+..+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|
T Consensus 1085 Lie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1085 LIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred HHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHH
Confidence 322 677888888888754 45778889999999999999999999775 6777888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 005317 396 FEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESD 475 (702)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 475 (702)
.+.|...++.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++|..+|...
T Consensus 1154 IeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1154 VKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred HHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 99999887754 33333335888889988888644443 1 345556667999999999999999999985
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 005317 476 DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMI 555 (702)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 555 (702)
..|..+..+|.+.|++++|++.+++. .+..+|..+..+|...|++..|...... +..++..+..++
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli 1287 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELI 1287 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHH
Confidence 58999999999999999999999886 3458888999999999999999886653 344667788999
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHh
Q 005317 556 DLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACM--VQGDVNCGRHTAEKILELHP-----SCAGTHITLANIYAA 626 (702)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~ 626 (702)
..|.+.|.+++|+.+++.... +.....|..|...+. +-++..++.+.|..-..+.| +++..|..++.+|.+
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988876 334557766666665 55678888888887777666 678889999999999
Q ss_pred cCChHHHHHHH
Q 005317 627 KGRWREAAEVR 637 (702)
Q Consensus 627 ~g~~~~A~~~~ 637 (702)
.|+++.|....
T Consensus 1368 ~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1368 YEEYDNAIITM 1378 (1630)
T ss_pred cccHHHHHHHH
Confidence 99999998543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.7e-18 Score=175.86 Aligned_cols=323 Identities=11% Similarity=0.027 Sum_probs=248.5
Q ss_pred hhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHH
Q 005317 310 EYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR---RDIISWSTIIGGY 386 (702)
Q Consensus 310 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 386 (702)
...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|+..|+++.+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556677778888899999999999888864 45577888888888888888888888887732 3566788888888
Q ss_pred HcCCChHHHHHHHHHHHHCCCCC---CHH-HHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 005317 387 SQGGYEEEAFEYLALMRREGPRP---NEF-AFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSI 462 (702)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~g~~p---~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 462 (702)
...|++++|...|+++.+. .| +.. .+..+... .. ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 8888888888888888764 44 222 22222111 00 01122346677888899
Q ss_pred HHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 005317 463 KEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMS 539 (702)
Q Consensus 463 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 539 (702)
++|...|+++. +.+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988888765 3567788889999999999999999999988753 4466788888889999999999999999887
Q ss_pred HhhCCCCC-hhhHH------------HHHHHHHhcCCHHHHHHHHHhCCC-CCC-H----HHHHHHHHHHHhcCCHHHHH
Q 005317 540 DKYGFVPS-KEHYG------------CMIDLLCRAGRLSDAENMIENMPH-QKD-D----VVWSTLLRACMVQGDVNCGR 600 (702)
Q Consensus 540 ~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~----~~~~~l~~~~~~~g~~~~A~ 600 (702)
+. .|+ ...+. .++..+.+.|++++|...++++.. .|+ . ..+..++..+...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 54 444 33332 236678999999999999998876 444 2 23556788899999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHH
Q 005317 601 HTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRML 680 (702)
Q Consensus 601 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 680 (702)
..++++++.+|+++..+..++.+|...|++++|...++++.+. +|....+...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l 346 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------------------------NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHHHH
Confidence 9999999999999999999999999999999999999998864 36666777777
Q ss_pred HHHHHHhc
Q 005317 681 DLLASRES 688 (702)
Q Consensus 681 ~~l~~~~~ 688 (702)
..+....+
T Consensus 347 ~~~~~~~~ 354 (359)
T 3ieg_A 347 EKAQRLLK 354 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665543
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=1.1e-15 Score=168.96 Aligned_cols=569 Identities=12% Similarity=0.084 Sum_probs=358.2
Q ss_pred hhHHHHHHHHHHHhhccCccccc--cccccCcccCchhhhhHHHHHHccCChHHHHHHhhcCCC-C-----CcchHHHHH
Q 005317 8 HRVGRLFASSAIACTERRPLLLF--QGTQLPVYVSTPEVNSQLKHLVKSGYLHDARKMFDTMTQ-R-----DEISWTTLI 79 (702)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~ll 79 (702)
|+=|-.|..+|...-.+|-.+.. ....++-..++.--...+++|...|.+.+|+++++++.- + +...-+.++
T Consensus 950 r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi 1029 (1630)
T 1xi4_A 950 RKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLI 1029 (1630)
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHH
Confidence 34456677777555543322222 222233334445556778888888888888888887652 2 224455566
Q ss_pred HHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCCh
Q 005317 80 SGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKI 159 (702)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 159 (702)
..-++. +..+..++.++.. .....-+...+...|.+++|..+|++.. ......+.++. ..+++
T Consensus 1030 ~tAIka-D~~Rv~eyI~kLd--------~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nl 1092 (1630)
T 1xi4_A 1030 LTAIKA-DRTRVMEYINRLD--------NYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNL 1092 (1630)
T ss_pred HHHHHh-ChhhHHHHHHHhh--------hccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhH
Confidence 555555 4455555555442 1113336667777888888888888742 12222233332 66888
Q ss_pred hHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 005317 160 ELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRG 239 (702)
Q Consensus 160 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 239 (702)
++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+.+...++..
T Consensus 1093 drAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1093 DRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 88888888764 4667889999999999999999998663 467788889999999999999999998887764
Q ss_pred CCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 005317 240 FDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISA 319 (702)
Q Consensus 240 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 319 (702)
++....+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+...
T Consensus 1165 --~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~t 1230 (1630)
T 1xi4_A 1165 --RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAST 1230 (1630)
T ss_pred --ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHH
Confidence 44444456888899988888655443 3456667778888889999999999999884 378888999
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 005317 320 SANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYL 399 (702)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 399 (702)
+.+.|+++.|.+.++.. .+..+|..+..++...|++..|...... ...+...+..++..|.+.|.+++|+.++
T Consensus 1231 LvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1231 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred HHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999888876 4567888888888889999999888765 3345556678888999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHc--ccCcHHHHHHHHHHHHHhCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 005317 400 ALMRREGPRPNEFAFASVLSVCG--NMAILEQGKQIHAHVMSIGLER------TAMIKSALINMYSKCGSIKEASQIFYE 471 (702)
Q Consensus 400 ~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~ 471 (702)
+...... +.....|+-+...++ +.++..++.+.|..-. ++++ ....|..++..|.+.|+++.|....-+
T Consensus 1304 E~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1304 EAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 7776533 223334444444443 4445555555544322 2222 466788888899999999988743322
Q ss_pred C-------------C--CCCHHHHHHHHHHHHHcC---------------ChHHHHHHHHHchhCCCCCCHHHH------
Q 005317 472 T-------------E--SDDIVSWTAMINGYAEHG---------------YSQEAIHLFEKVPMVGLRPDSVTF------ 515 (702)
Q Consensus 472 ~-------------~--~~~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~~~------ 515 (702)
- . ..|+..|...+.-|.... +++.+.++|.+.-. -|-...|
T Consensus 1381 h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~---l~lik~yl~~vq~ 1457 (1630)
T 1xi4_A 1381 HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ---LPLVKPYLRSVQN 1457 (1630)
T ss_pred ccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCC---hHHhHHHHHHHHH
Confidence 1 1 235666666666665444 66666666553211 1111111
Q ss_pred -------HHHHHHHhccCcHHHHHHHHHHhH---H---hhCCC-CChhhHHHHHH-HHHhcCCHHHHHHHHHhCCCCCCH
Q 005317 516 -------MGVLTACSHAGLVDLGFHYFNLMS---D---KYGFV-PSKEHYGCMID-LLCRAGRLSDAENMIENMPHQKDD 580 (702)
Q Consensus 516 -------~~ll~~~~~~g~~~~A~~~~~~~~---~---~~~~~-p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~p~~ 580 (702)
..+...+....+++.-+.-.+.-. . ...+. -+..-+..+.. .|.+.|+|..|.+++.+..
T Consensus 1458 ~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~----- 1532 (1630)
T 1xi4_A 1458 HNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS----- 1532 (1630)
T ss_pred hcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc-----
Confidence 111122222222221111110000 0 00000 01111233333 3444578888888777655
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005317 581 VVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEV 636 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 636 (702)
.|.-.+.+...+|+.+.+++++.--.+. .+.++|......+...=+.+-++++
T Consensus 1533 -l~~dAm~~a~~S~d~e~~e~ll~~F~~~--~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1533 -LYKDAMQYASESKDTELAEELLQWFLQE--EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred -CHHHHHHHHHHcCCHHHHHHHHHHHHhc--CChhHHHHHHHHHhccCCchHHHHH
Confidence 3445666777888888887777776666 5666777777777777777665553
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=5.8e-18 Score=171.93 Aligned_cols=324 Identities=10% Similarity=0.057 Sum_probs=242.6
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 005317 274 DVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMA 353 (702)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 353 (702)
|+..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567788899999999999999999998864 4457788889999999999999999999999875 446788999999
Q ss_pred HHHhcCCHHHHHHHHhcCCCCC------hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcH
Q 005317 354 MYSKCGQLTSTSIVFHGMIRRD------IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAIL 427 (702)
Q Consensus 354 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 427 (702)
.|...|++++|...|+++.+.+ ...+..+...+. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 9999999999999999885432 233333321100 00112223334445555
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHch
Q 005317 428 EQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVP 504 (702)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (702)
+.|...++.+.+... .+...+..+...+...|++++|...++++. +.+...+..+...+...|++++|...|++..
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555544432 234555666777777777777777777654 2466778888888888888888888888887
Q ss_pred hCCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-h----hhHHHHHHHHHhcCCHHHH
Q 005317 505 MVGLRPDSVTFM------------GVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-K----EHYGCMIDLLCRAGRLSDA 567 (702)
Q Consensus 505 ~~g~~p~~~~~~------------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A 567 (702)
+.. +.+...+. .+...+...|++++|...++.+.+. .|+ . ..+..+..++...|++++|
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 642 22333322 2356688899999999999999865 344 2 3355688899999999999
Q ss_pred HHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhc
Q 005317 568 ENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAK 627 (702)
Q Consensus 568 ~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 627 (702)
...++++.. .| +..+|..++..+...|++++|...++++++++|++...+..+..+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999877 44 7889999999999999999999999999999999999998888776554
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.2e-17 Score=167.55 Aligned_cols=280 Identities=9% Similarity=-0.012 Sum_probs=179.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHccc
Q 005317 348 ANSIMAMYSKCGQLTSTSIVFHGMIR---RDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNM 424 (702)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 424 (702)
+..+...+...|++++|+++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 33334444444444444444444311 123334444455555555555555555555432 12333444444555555
Q ss_pred C-cHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005317 425 A-ILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLF 500 (702)
Q Consensus 425 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 500 (702)
| +++.|...++.+.+.. +.+...+..+...+...|++++|...|+++. +.+...+..+...+...|++++|.+.+
T Consensus 104 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5 5555555555555433 1234455566667777777777777776654 234556666777888888888888888
Q ss_pred HHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCC-------CCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 005317 501 EKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGF-------VPSKEHYGCMIDLLCRAGRLSDAENMIEN 573 (702)
Q Consensus 501 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (702)
+++.+.. +.+...+..+...+...|++++|...++++.+...- ......+..++.++...|++++|...+++
T Consensus 183 ~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 183 SQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8877642 345567777888888888888888888887654211 22356788888888888888888888888
Q ss_pred CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH-HhcCCh
Q 005317 574 MPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIY-AAKGRW 630 (702)
Q Consensus 574 ~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 630 (702)
+.. +.+...+..++..+...|++++|.+.++++++++|+++..+..++.++ ...|+.
T Consensus 262 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 262 ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 765 345678888888888888888888888888888888888888888887 445554
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.1e-17 Score=164.49 Aligned_cols=284 Identities=10% Similarity=0.037 Sum_probs=239.1
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005317 374 RDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALI 453 (702)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 453 (702)
.+...+..++..+...|++++|.++|+++.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 356677788889999999999999999998764 22344555677788899999999999999998653 3567788899
Q ss_pred HHHHhcC-CHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHH
Q 005317 454 NMYSKCG-SIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVD 529 (702)
Q Consensus 454 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 529 (702)
..+...| ++++|...|++... .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998653 467789999999999999999999999998753 334567777899999999999
Q ss_pred HHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHH
Q 005317 530 LGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-----------QKDDVVWSTLLRACMVQGDVN 597 (702)
Q Consensus 530 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~p~~~~~~~l~~~~~~~g~~~ 597 (702)
+|.+.++++.+ ..|+ ...+..++..+...|++++|...++++.. +....++..++..+...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999974 3554 78899999999999999999999988755 223578999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHH
Q 005317 598 CGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIY 677 (702)
Q Consensus 598 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 677 (702)
+|+..++++++..|+++..+..++.+|...|++++|.+.++++.+. .|.....+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~ 307 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--------------------------RRDDTFSV 307 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--------------------------CSCCHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--------------------------CCCchHHH
Confidence 9999999999999999999999999999999999999999987653 36666777
Q ss_pred HHHHHHH-HHhcC
Q 005317 678 RMLDLLA-SRESD 689 (702)
Q Consensus 678 ~~l~~l~-~~~~~ 689 (702)
..+.... ...++
T Consensus 308 ~~l~~~~~~~~g~ 320 (330)
T 3hym_B 308 TMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhCc
Confidence 7777654 34443
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=2.6e-16 Score=166.96 Aligned_cols=364 Identities=10% Similarity=0.018 Sum_probs=252.9
Q ss_pred hHHHHHHHHhhh----CCChHHHHHHHhccCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHH
Q 005317 245 FVANSLATMYSK----CGKLDYSLRLFERMST-RDVISWTTIITSYVQ----MGEEENAFDAFVRMQESDVKPNEYTFAA 315 (702)
Q Consensus 245 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 315 (702)
..+..+...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|.+.|++..+.| +...+..
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 116 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQN 116 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 333444444444 4555555555554432 244455555555555 556666666666665543 3344444
Q ss_pred HHHHHHc----cCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhhHHHHHHHH
Q 005317 316 IISASAN----LARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSK----CGQLTSTSIVFHGMIR-RDIISWSTIIGGY 386 (702)
Q Consensus 316 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~ 386 (702)
+...+.. .+++++|...|+...+.| +...+..+...|.. .+++++|.+.|++..+ .+..++..+...|
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 193 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMY 193 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444544 556666666666665554 34445555566655 5667777777766533 3556666677777
Q ss_pred Hc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc----cCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 005317 387 SQ----GGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGN----MAILEQGKQIHAHVMSIGLERTAMIKSALINMYSK 458 (702)
Q Consensus 387 ~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 458 (702)
.. .+++++|.+.|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+..+|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQ 267 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred hcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHC
Confidence 66 677888888888777654 34455555555543 677888888887777654 34455566777776
Q ss_pred ----cCCHHHHHHHHhhCCC-CCHHHHHHHHHHHHHc-----CChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccC--
Q 005317 459 ----CGSIKEASQIFYETES-DDIVSWTAMINGYAEH-----GYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAG-- 526 (702)
Q Consensus 459 ----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-- 526 (702)
.++.++|...|++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...|
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSE 344 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCc
Confidence 7899999999988664 4677888888888887 89999999999998865 3456666766666645
Q ss_pred -cHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 005317 527 -LVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCR----AGRLSDAENMIENMPHQKDDVVWSTLLRACMV----QGDVN 597 (702)
Q Consensus 527 -~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 597 (702)
+.++|.++|++..+. .+...+..|...|.. .+++++|..+|++.....+...+..|...|.. .++.+
T Consensus 345 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred ccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 889999999998764 367788889999988 89999999999998877788899999999988 89999
Q ss_pred HHHHHHHHHHHhCCC---CchhHHHHHHHHHhc
Q 005317 598 CGRHTAEKILELHPS---CAGTHITLANIYAAK 627 (702)
Q Consensus 598 ~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 627 (702)
+|...|+++.+.+|+ ++.....|+.++...
T Consensus 421 ~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 421 QAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 999999999999954 777777787776653
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=2.7e-15 Score=159.09 Aligned_cols=353 Identities=11% Similarity=0.050 Sum_probs=297.8
Q ss_pred CCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCC
Q 005317 272 TRDVISWTTIITSYVQ----MGEEENAFDAFVRMQESDVKPNEYTFAAIISASAN----LARIQWGEQLHAHVLRLGLVD 343 (702)
Q Consensus 272 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 343 (702)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...|+...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3466777778888887 899999999999998875 56677777788887 899999999999998875
Q ss_pred chHHHHHHHHHHHh----cCCHHHHHHHHhcCCCC-ChhhHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHH
Q 005317 344 SLSVANSIMAMYSK----CGQLTSTSIVFHGMIRR-DIISWSTIIGGYSQ----GGYEEEAFEYLALMRREGPRPNEFAF 414 (702)
Q Consensus 344 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~ 414 (702)
+...+..|...|.. .+++++|+..|+...+. +..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55667778888888 88999999999987544 66788888888887 789999999999998865 56667
Q ss_pred HHHHHHHcc----cCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCHHHHHHHHH
Q 005317 415 ASVLSVCGN----MAILEQGKQIHAHVMSIGLERTAMIKSALINMYSK----CGSIKEASQIFYETES-DDIVSWTAMIN 485 (702)
Q Consensus 415 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 485 (702)
..+...+.. .++.++|...+....+.+ +...+..+..+|.. .+++++|..+|++..+ .+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777766 799999999999998865 45667778888886 8999999999998654 56778888888
Q ss_pred HHHH----cCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 005317 486 GYAE----HGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHA-----GLVDLGFHYFNLMSDKYGFVPSKEHYGCMID 556 (702)
Q Consensus 486 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 556 (702)
.|.. .+++++|++.|++..+.| +...+..+...+... +++++|...|++..+. + +...+..|..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHH
Confidence 8888 899999999999998764 445666677777766 8999999999998764 3 4567888888
Q ss_pred HHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh---
Q 005317 557 LLCRAG---RLSDAENMIENMPHQKDDVVWSTLLRACMV----QGDVNCGRHTAEKILELHPSCAGTHITLANIYAA--- 626 (702)
Q Consensus 557 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 626 (702)
.|...| ++++|..+|++.....++..+..+...|.. .+++++|...++++.+.+ ++..+..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888866 889999999998877788999999999998 899999999999999864 68899999999998
Q ss_pred -cCChHHHHHHHHHHHhCCC
Q 005317 627 -KGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 627 -~g~~~~A~~~~~~~~~~~~ 645 (702)
.+++++|..++++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=3.5e-17 Score=162.60 Aligned_cols=284 Identities=13% Similarity=0.136 Sum_probs=116.3
Q ss_pred cCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 005317 155 KLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTI 234 (702)
Q Consensus 155 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 234 (702)
+.|++++|.+.++++..| .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 667888888888888655 4888888888888888888888865 35777888888888888888888888877
Q ss_pred HHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 005317 235 MLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFA 314 (702)
Q Consensus 235 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 314 (702)
.++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7764 45567788888889999988888877753 67778888888899999999999998876 4788
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHH
Q 005317 315 AIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEE 394 (702)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 394 (702)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8888888888888888888877 367888888888888888888877777654 344445568888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHcc--cCcHHHHHHHHHHHHHhCCCC------ChhHHHHHHHHHHhcCCHHHHH
Q 005317 395 AFEYLALMRREGPRPNEFAFASVLSVCGN--MAILEQGKQIHAHVMSIGLER------TAMIKSALINMYSKCGSIKEAS 466 (702)
Q Consensus 395 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~ 466 (702)
|..+++...... +.....|+-+-..+++ .++..+..+.|.. +.+++| +...|..++..|...++++.|.
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 888888876543 3334445444433333 3334443333321 112222 2344555666666666666665
Q ss_pred HHHh
Q 005317 467 QIFY 470 (702)
Q Consensus 467 ~~~~ 470 (702)
...-
T Consensus 303 ~tm~ 306 (449)
T 1b89_A 303 ITMM 306 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2.5e-17 Score=168.04 Aligned_cols=280 Identities=10% Similarity=-0.033 Sum_probs=214.6
Q ss_pred HhcCCHHHHHH-HHhcCCCC-------ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcH
Q 005317 356 SKCGQLTSTSI-VFHGMIRR-------DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAIL 427 (702)
Q Consensus 356 ~~~g~~~~a~~-~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 427 (702)
.-.|++++|.. .|++.... +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34467777777 77655221 24567778888888888888888888887753 33556777777888888888
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHHHHHH---------------HHHHHHH
Q 005317 428 EQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES--D-DIVSWTA---------------MINGYAE 489 (702)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~ 489 (702)
+.|...++.+.+.. +.+...+..+...|...|++++|...|+++.. | +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888887765 33566777788888888888888888887542 1 2222211 1333348
Q ss_pred cCChHHHHHHHHHchhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 005317 490 HGYSQEAIHLFEKVPMVGLRP-DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDA 567 (702)
Q Consensus 490 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 567 (702)
.|++++|+..|+++.+..... +..++..+...+...|++++|...|+++.+. .|+ ...+..++.++.+.|++++|
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999998753111 4778899999999999999999999999865 454 78899999999999999999
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----------chhHHHHHHHHHhcCChHHHH
Q 005317 568 ENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC-----------AGTHITLANIYAAKGRWREAA 634 (702)
Q Consensus 568 ~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 634 (702)
...++++.. +.+..++..++..+...|++++|...+++++++.|++ ...|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 999999876 4567899999999999999999999999999999887 789999999999999999999
Q ss_pred HHHHHH
Q 005317 635 EVRKMM 640 (702)
Q Consensus 635 ~~~~~~ 640 (702)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 887643
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=2.7e-15 Score=160.80 Aligned_cols=413 Identities=9% Similarity=0.006 Sum_probs=278.7
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC--CCcchHHHHHH
Q 005317 206 QGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMST--RDVISWTTIIT 283 (702)
Q Consensus 206 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 283 (702)
+-|...|..++.. ...|+++.|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++... |++..|..++.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3366677777774 66788999999999888763 55677888888888888999999999988764 56666666664
Q ss_pred H-HHhcCChhHHHH----HHHHHHHC-CCCCC-hhhHHHHHHHHHc---------cCchHHHHHHHHHHHHhCCCCchHH
Q 005317 284 S-YVQMGEEENAFD----AFVRMQES-DVKPN-EYTFAAIISASAN---------LARIQWGEQLHAHVLRLGLVDSLSV 347 (702)
Q Consensus 284 ~-~~~~g~~~~a~~----~~~~m~~~-g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~ 347 (702)
. ....|+.+.|.+ +|++.... |..|+ ...|...+..... .|+++.|..+|+...+....+...+
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 2 234577776665 66655442 54443 3444444444333 5677778888877776211111223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHH------HCC---CCCCH-------
Q 005317 348 ANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMR------REG---PRPNE------- 411 (702)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~------~~g---~~p~~------- 411 (702)
|..........|. ..+..++. ...+++..|..++.++. +.. +.|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 3322221111110 01111110 12344556666555422 111 23331
Q ss_pred -HHHHHHHHHHcc----cCcH----HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHH
Q 005317 412 -FAFASVLSVCGN----MAIL----EQGKQIHAHVMSIGLERTAMIKSALINMYSK-------CGSIK-------EASQI 468 (702)
Q Consensus 412 -~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~ 468 (702)
..|...+..... .++. +.+..+++.+.... +.++..|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 233333322211 1222 36667788877753 3467777778877775 68876 89999
Q ss_pred HhhCCC---C-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 005317 469 FYETES---D-DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS--VTFMGVLTACSHAGLVDLGFHYFNLMSDKY 542 (702)
Q Consensus 469 ~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 542 (702)
|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|++..+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 998763 3 5789999999999999999999999999984 5643 47888888888999999999999999743
Q ss_pred CCCCC-hhhHHHHHHH-HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch---
Q 005317 543 GFVPS-KEHYGCMIDL-LCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG--- 615 (702)
Q Consensus 543 ~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--- 615 (702)
.|+ ...|...+.. +...|+.++|..+|++... +.+...|..++..+...|+.++|..+|+++++..|.++.
T Consensus 386 --~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp --TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred --cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 444 3334333322 3468999999999998877 446889999999999999999999999999999876665
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 616 -THITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 616 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
.|...+......|+.+.+..+.+++.+.-
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77788888888999999999999987753
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.4e-16 Score=155.53 Aligned_cols=269 Identities=10% Similarity=-0.014 Sum_probs=193.7
Q ss_pred HHhcCCHHHHHHHHhcCCCCCh----hhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHH
Q 005317 355 YSKCGQLTSTSIVFHGMIRRDI----ISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQG 430 (702)
Q Consensus 355 ~~~~g~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 430 (702)
....|+++.|+..++.....++ .....+..+|...|+++.|+..++. ...|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3445666666666555433221 2334455666666666666654433 1344555666666666666666666
Q ss_pred HHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCC
Q 005317 431 KQIHAHVMSIGLER-TAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLR 509 (702)
Q Consensus 431 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 509 (702)
.+.++.+...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 66666666555333 444556677889999999999999998 567889999999999999999999999999875 4
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHH
Q 005317 510 PDSVTF---MGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-Q-KDDVVWS 584 (702)
Q Consensus 510 p~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~ 584 (702)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|...|+++.. . .+..++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 654321 12333444568999999999999876 244588899999999999999999999999877 4 4678999
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 005317 585 TLLRACMVQGDVNC-GRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVR 637 (702)
Q Consensus 585 ~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 637 (702)
.++..+...|+.++ +.++++++++++|+++.+.. ...+.+.++++..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 99999999999875 67899999999999987654 455666666655443
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=7.9e-17 Score=160.09 Aligned_cols=286 Identities=12% Similarity=0.115 Sum_probs=106.9
Q ss_pred hCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHH
Q 005317 256 KCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAH 335 (702)
Q Consensus 256 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 335 (702)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.++..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445566666666666443 3666666666666666666666643 24555666666666666666666665555
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005317 336 VLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFA 415 (702)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 415 (702)
.++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.++..|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 5542 33355566666666666666666655543 44556666666666666666666666654 2456
Q ss_pred HHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHH
Q 005317 416 SVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQE 495 (702)
Q Consensus 416 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 495 (702)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 6666666666666666666655 245666666666777777777766555543 333334457777777888888
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHhHHhhCCCC------ChhhHHHHHHHHHhcCCHHHH
Q 005317 496 AIHLFEKVPMVGLRPDSVTFMGVLTACS--HAGLVDLGFHYFNLMSDKYGFVP------SKEHYGCMIDLLCRAGRLSDA 567 (702)
Q Consensus 496 A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A 567 (702)
|+.+++...... +.-...|+.+.-+++ +-++..+.++.|. .+.+++| +...|..++..|...++++.|
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 888877766432 222334544444443 3344444444444 2224455 367788888888888888887
Q ss_pred HHHHHhC
Q 005317 568 ENMIENM 574 (702)
Q Consensus 568 ~~~~~~~ 574 (702)
....-+-
T Consensus 302 ~~tm~~h 308 (449)
T 1b89_A 302 IITMMNH 308 (449)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 7765544
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=3.8e-17 Score=166.69 Aligned_cols=314 Identities=11% Similarity=-0.009 Sum_probs=226.7
Q ss_pred CCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHcccCcHHHHHHHH
Q 005317 359 GQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFE-YLALMRREGP-RP--NEFAFASVLSVCGNMAILEQGKQIH 434 (702)
Q Consensus 359 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~ 434 (702)
+.++.+...|+.+...+.. ++...|++++|+. .+++...... .| +...+..+...+...|+++.|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555555443322 3345588899988 8876654321 11 2345667888899999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC
Q 005317 435 AHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD 511 (702)
Q Consensus 435 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (702)
+.+.+.. +.+...+..+..+|...|++++|...|+++. +.+..++..+..++...|++++|++.++++.... |+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC
Confidence 9999875 3467788889999999999999999999765 4578899999999999999999999999998753 33
Q ss_pred H-HHHHH---------------HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005317 512 S-VTFMG---------------VLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMP 575 (702)
Q Consensus 512 ~-~~~~~---------------ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 575 (702)
. ..+.. .+..+...|++++|.+.|+++.+...-.++..++..++.+|.+.|++++|...++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 22221 2333448899999999999998662222247889999999999999999999999987
Q ss_pred C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeE
Q 005317 576 H--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSR 653 (702)
Q Consensus 576 ~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 653 (702)
. +.+..+|..++..+...|++++|+..++++++.+|+++..+..++.+|.+.|++++|...++++.+..+.....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--- 321 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP--- 321 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc---
Confidence 6 44678999999999999999999999999999999999999999999999999999999999998743321100
Q ss_pred EEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhcCCCCCCccc
Q 005317 654 IKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRESDIDDLDSLV 697 (702)
Q Consensus 654 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 697 (702)
....+|....++..++.+....|+...+..+.
T Consensus 322 ------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 322 ------------RGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp ---------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred ------------cccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 01235677889999999999999876655443
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.1e-16 Score=156.23 Aligned_cols=247 Identities=9% Similarity=0.004 Sum_probs=204.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005317 383 IGGYSQGGYEEEAFEYLALMRREGPRPNE--FAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCG 460 (702)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 460 (702)
|......|++..|+..++.... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678999999999887644 34443 3445667899999999999876543 24556778888999999999
Q ss_pred CHHHHHHHHhhCC----CC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005317 461 SIKEASQIFYETE----SD-DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYF 535 (702)
Q Consensus 461 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 535 (702)
+.++|.+.++++. .| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 23 667788888999999999999999987 467778889999999999999999999
Q ss_pred HHhHHhhCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005317 536 NLMSDKYGFVPSKEHY---GCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELH 610 (702)
Q Consensus 536 ~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 610 (702)
+.+.+. .|+.... ..++..+...|++++|..+|+++.. +++...|+.++.++...|++++|++.++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999865 4663221 2334555566999999999999977 5678899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHH-HHHHHHHHHhCC
Q 005317 611 PSCAGTHITLANIYAAKGRWRE-AAEVRKMMRSKG 644 (702)
Q Consensus 611 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 644 (702)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987 578999988754
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1e-15 Score=161.92 Aligned_cols=384 Identities=9% Similarity=-0.050 Sum_probs=201.9
Q ss_pred chhHHHHHHHHhhhCCChHHHHHHHhccC-----------CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 005317 243 VSFVANSLATMYSKCGKLDYSLRLFERMS-----------TR-DVISWTTIITSYVQMGEEENAFDAFVRMQES-----D 305 (702)
Q Consensus 243 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g 305 (702)
....|+.|...+...|++++|++.|++.. .+ ...+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34567777777777888887777776542 11 3446777777777777777777777766432 1
Q ss_pred -CCC-ChhhHHHHHHHHHc--cCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH---HhcCCHHHHHHHHhcCC---CCC
Q 005317 306 -VKP-NEYTFAAIISASAN--LARIQWGEQLHAHVLRLGLVDSLSVANSIMAMY---SKCGQLTSTSIVFHGMI---RRD 375 (702)
Q Consensus 306 -~~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~---~~~ 375 (702)
..+ ...++.....++.. .+++++|...|+.+.+.. +.+...+..+...+ ...++.++|++.+++.. ..+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 111 12334433333332 345667777777666654 22333333333332 23344555555555432 123
Q ss_pred hhhHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHH
Q 005317 376 IISWSTIIGGYSQ----GGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSA 451 (702)
Q Consensus 376 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 451 (702)
..++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+..+. +..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 3344444333332 244555666665555432 223344455555555555666665555555554321 2333333
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 005317 452 LINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLG 531 (702)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 531 (702)
+..+|...+....+.. . ..........+.++.|...+++..+.. +.+..++..+...+...|++++|
T Consensus 287 lg~~y~~~~~~~~~~~------~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLR------E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhHH------H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHH
Confidence 4433322111100000 0 000001111234677888888877642 33446788888899999999999
Q ss_pred HHHHHHhHHhhCCCCChh----hHHHHHHH-HHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005317 532 FHYFNLMSDKYGFVPSKE----HYGCMIDL-LCRAGRLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVNCGRHTAEK 605 (702)
Q Consensus 532 ~~~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (702)
.+.|++..+. .|+.. .+..+... +...|++++|+..|++... .|+...+. +....+..++++
T Consensus 354 ~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~ 421 (472)
T 4g1t_A 354 EYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKM 421 (472)
T ss_dssp HHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHH
Confidence 9999988754 34422 23333332 3467899999999988765 55543322 223456678888
Q ss_pred HHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEE
Q 005317 606 ILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRI 654 (702)
Q Consensus 606 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 654 (702)
.++.+|+++.+|..||.+|...|++++|++.++++.+.+.....+.+|+
T Consensus 422 ~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999999999999999999998776655555554
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=7.4e-15 Score=157.43 Aligned_cols=406 Identities=9% Similarity=0.052 Sum_probs=282.3
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005317 172 RNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLA 251 (702)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 251 (702)
.+...|..++. +.+.|++++|..+|+++.+. .+.+...|...+..+.+.|+++.|..+|+.+++.. |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 46778999998 58899999999999999875 34466678899999999999999999999999874 5777777777
Q ss_pred HHh-hhCCChHHHHH----HHhccC------CCCcchHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCh-
Q 005317 252 TMY-SKCGKLDYSLR----LFERMS------TRDVISWTTIITSYVQ---------MGEEENAFDAFVRMQESDVKPNE- 310 (702)
Q Consensus 252 ~~~-~~~g~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~- 310 (702)
... ...|+.+.|.+ +|+... .++...|...+..... .|+++.|..+|++..+. |+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 533 35677777665 666542 1355678877776654 68899999999999873 432
Q ss_pred --hhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhc----------C---CCCC
Q 005317 311 --YTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHG----------M---IRRD 375 (702)
Q Consensus 311 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----------~---~~~~ 375 (702)
..|..........|. ..+..++. .+.+++..|..++.. . ..|+
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 222221111100110 01111110 012233333333322 1 0111
Q ss_pred --------hhhHHHHHHHHHcC----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc-------cCcHH----
Q 005317 376 --------IISWSTIIGGYSQG----GYE----EEAFEYLALMRREGPRPNEFAFASVLSVCGN-------MAILE---- 428 (702)
Q Consensus 376 --------~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~---- 428 (702)
...|...+...... ++. .++..+|++..... +-+...|......+.+ .|+.+
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 23455444332221 232 46777888887742 2345566666665554 68876
Q ss_pred ---HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CH-HHHHHHHHHHHHcCChHHHHHHHH
Q 005317 429 ---QGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES--D-DI-VSWTAMINGYAEHGYSQEAIHLFE 501 (702)
Q Consensus 429 ---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~ 501 (702)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|.++|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888888887633345678888899999999999999999998652 3 33 589999999999999999999999
Q ss_pred HchhCCCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C
Q 005317 502 KVPMVGLRPD-SVTFMGVLTA-CSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-Q 577 (702)
Q Consensus 502 ~m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 577 (702)
+..+. +|+ ...|...... +...|+.++|..+|+...+. .|+ ...|..++..+.+.|+.++|..+|+++.. .
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99874 333 3333332222 33589999999999999876 454 78899999999999999999999999865 2
Q ss_pred C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005317 578 K-----DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 578 p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
| ....|...+......|+.+.+..+.+++.+..|+
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2 2448888888888999999999999999999884
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1.1e-16 Score=163.17 Aligned_cols=260 Identities=10% Similarity=-0.047 Sum_probs=206.3
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005317 375 DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALIN 454 (702)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 454 (702)
+...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44567778888888888888888888887753 3356677788888888888888888888888765 335677788888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCC-CCHHHHHHHHH
Q 005317 455 MYSKCGSIKEASQIFYETESDD-------------IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLR-PDSVTFMGVLT 520 (702)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~ 520 (702)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888888765311 223445678889999999999999999875311 15778999999
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHH
Q 005317 521 ACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVN 597 (702)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~ 597 (702)
.+...|++++|.+.|+++.+. .| +..++..++.+|...|++++|...|+++.. .| +..++..++..|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999865 45 488899999999999999999999999877 44 5889999999999999999
Q ss_pred HHHHHHHHHHHhCCC------------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 005317 598 CGRHTAEKILELHPS------------CAGTHITLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 598 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (702)
+|...+++++++.|+ +...|..++.++...|+.+.|....++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999876 367899999999999999998887654
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=2.6e-16 Score=157.43 Aligned_cols=257 Identities=8% Similarity=-0.098 Sum_probs=179.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 005317 379 WSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSK 458 (702)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 458 (702)
+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3444444455555555555555544432 1233344444445555555555555555554442 2234444455555555
Q ss_pred cCCHHHHHHHHhhCCC---CCHHHHHHH--------------HH-HHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHH
Q 005317 459 CGSIKEASQIFYETES---DDIVSWTAM--------------IN-GYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLT 520 (702)
Q Consensus 459 ~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 520 (702)
.|++++|...|+++.. .+...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555554431 111112111 22 3667888999999999988753 446778888999
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHH
Q 005317 521 ACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVN 597 (702)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~ 597 (702)
.+...|++++|.+.++++.+. .| +...+..++..+...|++++|...++++.. +.+..++..++..+...|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 999999999999999999865 44 478899999999999999999999999876 446788999999999999999
Q ss_pred HHHHHHHHHHHhCCC------------CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005317 598 CGRHTAEKILELHPS------------CAGTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 598 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
+|...++++++..|+ ++..+..++.++.+.|++++|..++++..
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999998 78899999999999999999999887543
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=4.2e-16 Score=158.72 Aligned_cols=232 Identities=11% Similarity=-0.007 Sum_probs=195.8
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHH
Q 005317 410 NEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMING 486 (702)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 486 (702)
+...+..+...+.+.|+++.|...++.+.+... .+...+..+..+|...|++++|...|+++. +.+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 334577778889999999999999999998763 467888999999999999999999999876 3568899999999
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCH-H----------HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 005317 487 YAEHGYSQEAIHLFEKVPMVGLRPDS-V----------TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMI 555 (702)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~----------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 555 (702)
|...|++++|+..|+++.+. .|+. . .+..+...+...|++++|.++|+++.+...-.++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3432 2 223457788999999999999999987622222578899999
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHH
Q 005317 556 DLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREA 633 (702)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 633 (702)
..|...|++++|...++++.. +.+..+|..++..|...|++++|+..++++++.+|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999877 456889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 005317 634 AEVRKMMRSKG 644 (702)
Q Consensus 634 ~~~~~~~~~~~ 644 (702)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.4e-14 Score=153.20 Aligned_cols=383 Identities=11% Similarity=-0.017 Sum_probs=237.0
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHHh-----C---CCCchhHHHHHHHHhhhCCChHHHHHHHhccC------
Q 005317 206 QGDSYTFAIVLKASADSGALNFGREIHTIMLKR-----G---FDVVSFVANSLATMYSKCGKLDYSLRLFERMS------ 271 (702)
Q Consensus 206 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------ 271 (702)
......|+.+...+...|+.++|.+.|++..+. + .+....+|+.+...|...|++++|...+++..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334557888989999999999999999988763 1 12234678899999999999999999887653
Q ss_pred -CC----CcchHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCh-hhHHHHHHH---HHccCchHHHHHHHHHHHHhC
Q 005317 272 -TR----DVISWTTIITSYVQM--GEEENAFDAFVRMQESDVKPNE-YTFAAIISA---SANLARIQWGEQLHAHVLRLG 340 (702)
Q Consensus 272 -~~----~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~ 340 (702)
.+ ...++..+..++... +++++|++.|++..+. .|+. ..+..+... +...++.++|.+.++...+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11 234566555555554 5789999999999875 3543 344444333 445677788999999888875
Q ss_pred CCCchHHHHHHHHHHHh----cCCHHHHHHHHhcC---CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HH
Q 005317 341 LVDSLSVANSIMAMYSK----CGQLTSTSIVFHGM---IRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPN-EF 412 (702)
Q Consensus 341 ~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ 412 (702)
+.+..++..+...+.. .+++++|.+.+++. ...+..++..+...|...|++++|+..+++..+. .|+ ..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 3455556555555544 46788999999876 3346778899999999999999999999999885 444 44
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHH
Q 005317 413 AFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAE 489 (702)
Q Consensus 413 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 489 (702)
.+..+...+...+....+ .. ...........+..+.|...|++.. ..+...+..+...+..
T Consensus 283 ~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 555444433221111000 00 0001111112234567777777654 3456678889999999
Q ss_pred cCChHHHHHHHHHchhCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHH
Q 005317 490 HGYSQEAIHLFEKVPMVGLRPDSV--TFMGVLT-ACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSD 566 (702)
Q Consensus 490 ~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 566 (702)
.|++++|++.|++..+....|... .+..+.. .....|+.++|++.|++..+ +.|+........ ..
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~ 414 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DK 414 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HH
Confidence 999999999999998754333221 2333332 23567999999999998874 566643332222 23
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005317 567 AENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLA 621 (702)
Q Consensus 567 A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 621 (702)
+..+++.... +.+..+|..++..+...|++++|++.|+++++++|.+|.++.-+|
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3344444333 456789999999999999999999999999999998888776655
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=2.9e-15 Score=139.58 Aligned_cols=194 Identities=14% Similarity=0.050 Sum_probs=158.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHH
Q 005317 443 ERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVL 519 (702)
Q Consensus 443 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 519 (702)
+++...+..+...+.+.|++++|...|++.. +.+...|..+..++.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 4556677778888999999999999999765 3467889999999999999999999999998753 33557888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHH
Q 005317 520 TACSHA-----------GLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTL 586 (702)
Q Consensus 520 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l 586 (702)
..+... |++++|+..|++..+. .|+ ...+..+..+|...|++++|+..|+++.. ..+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 999999 9999999999999854 665 78889999999999999999999998765 4677899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005317 587 LRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
+.++...|++++|+..++++++.+|+++..+..++.++...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998765
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.2e-14 Score=139.68 Aligned_cols=225 Identities=13% Similarity=0.023 Sum_probs=168.7
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 005317 377 ISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMY 456 (702)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 456 (702)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|+++.|...+..+.+.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 345556666666666666666666666554 444445444444555555555554444433321000
Q ss_pred HhcCCHHHHHHHHhhCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 005317 457 SKCGSIKEASQIFYETESDD----IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGF 532 (702)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 532 (702)
.++ ..+|..+...+...|++++|+..|+++.+. .|+. ..+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 011 467778888888999999999999888873 4553 3455678899999
Q ss_pred HHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005317 533 HYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 533 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 609 (702)
+.++.+... .|+ ...+..++..+...|++++|...++++.. +.+..++..++..+...|++++|+..++++++.
T Consensus 126 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 126 KKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999988743 554 77888899999999999999999999876 456788999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 610 HPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 610 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
+|+++..+..++.+|...|++++|...++++.+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999987743
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=4.8e-14 Score=140.82 Aligned_cols=265 Identities=10% Similarity=-0.019 Sum_probs=140.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 005317 275 VISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAM 354 (702)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 354 (702)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 87 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK----------- 87 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC-----------
Confidence 3445566666666777777777776666542 2234445555555555555555555555555442 12
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH-HHHHH-------------HH-
Q 005317 355 YSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEF-AFASV-------------LS- 419 (702)
Q Consensus 355 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l-------------l~- 419 (702)
+..++..+...+...|++++|...++++.+.. |+.. .+..+ ..
T Consensus 88 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 88 --------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 33445555555556666666666666655532 2111 11111 01
Q ss_pred -HHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005317 420 -VCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIH 498 (702)
Q Consensus 420 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 498 (702)
.+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~--------------------------------~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN--------------------------------PNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC--------------------------------CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 1334444455555444444332 1234455555555555566666666
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 005317 499 LFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH- 576 (702)
Q Consensus 499 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 576 (702)
.++++.+.. +.+...+..+...+...|++++|.+.|+++.+. .| +...+..++.++.+.|++++|...++++..
T Consensus 194 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 194 NLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 665555432 223445555666666666666666666665543 23 255556666666666666666666665544
Q ss_pred CC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005317 577 QK-------------DDVVWSTLLRACMVQGDVNCGRHTAEKILELH 610 (702)
Q Consensus 577 ~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 610 (702)
.| +...|..+..++...|++++|..+++++++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 270 QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 22 24566666666666666666666666555543
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=171.18 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=114.9
Q ss_pred CchhHHHHHHHhhhcCCChhHHHHHhccCC-------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 005317 141 NSVFVGSALLDMYTKLGKIELGCRVFDEMP-------LRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFA 213 (702)
Q Consensus 141 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 213 (702)
.-..+||++|++|++.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345689999999999999999999997753 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhcc
Q 005317 214 IVLKASADSGAL-NFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERM 270 (702)
Q Consensus 214 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 270 (702)
++|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++.+.++...+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999985 789999999999999999999999988777665555444444444
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.6e-14 Score=138.82 Aligned_cols=234 Identities=10% Similarity=0.020 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 005317 345 LSVANSIMAMYSKCGQLTSTSIVFHGMIR--RDIISWSTIIGGYSQGGYEEEAFEYLALMRREGP--RPN----EFAFAS 416 (702)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~~ 416 (702)
...+..+...+...|++++|+..|++..+ .+...|..+..++...|++++|+..+++..+... .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46788899999999999999999988732 6778899999999999999999999999876421 112 244444
Q ss_pred HHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHH
Q 005317 417 VLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEA 496 (702)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (702)
+...+...|+++.|...++.+.+.. |+ ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RT-------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC-------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---------------------------------ch-------hHHHHHHhHHHHH
Confidence 4455555555555555555444432 22 1235556777888
Q ss_pred HHHHHHchhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 005317 497 IHLFEKVPMVGLRP-DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENM 574 (702)
Q Consensus 497 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 574 (702)
...++++... .| +...+..+...+...|++++|.+.|+++.+. .| +...+..++.++.+.|++++|...++++
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888887764 34 3457777888888889999999999888765 34 4778888899999999999999999888
Q ss_pred CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCchhHHHHHHH
Q 005317 575 PH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELH------PSCAGTHITLANI 623 (702)
Q Consensus 575 ~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 623 (702)
.. +.+...|..++..+...|++++|...+++++++. |++...+..+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 76 4457788999999999999999999999999998 8777777666543
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=6.5e-16 Score=165.62 Aligned_cols=129 Identities=9% Similarity=0.062 Sum_probs=105.4
Q ss_pred chhHHHHHHHHhhhCCChHHHHHHHhccC-------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 005317 243 VSFVANSLATMYSKCGKLDYSLRLFERMS-------TRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAA 315 (702)
Q Consensus 243 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 315 (702)
-..+|++||++||+.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34578888888888888888888886653 57888899999999999999999999999999999999999999
Q ss_pred HHHHHHccCch-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 005317 316 IISASANLARI-QWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGM 371 (702)
Q Consensus 316 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 371 (702)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++.+.++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999998874 788899999999999999999998887777665555555554443
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=1.2e-13 Score=133.85 Aligned_cols=244 Identities=11% Similarity=-0.037 Sum_probs=164.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHH
Q 005317 380 STIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERT--AMIKSALINMYS 457 (702)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~ 457 (702)
......+...|++++|+..|++..+... .+...+..+...+...|+++.|...++.+.+....++ ...+..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3344555556666666666666555321 1222444455555566666666666666555321111 223566777777
Q ss_pred hcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 005317 458 KCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHY 534 (702)
Q Consensus 458 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 534 (702)
..|++++|...|++.. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+...+...+++++|.+.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888887777654 3456788888888889999999999998888652 33455666666344455699999999
Q ss_pred HHHhHHhhCCCCC-hhhHHHHHHHHHhcCC---HHHHHHHHHhCCC----CCC------HHHHHHHHHHHHhcCCHHHHH
Q 005317 535 FNLMSDKYGFVPS-KEHYGCMIDLLCRAGR---LSDAENMIENMPH----QKD------DVVWSTLLRACMVQGDVNCGR 600 (702)
Q Consensus 535 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~----~p~------~~~~~~l~~~~~~~g~~~~A~ 600 (702)
|+.+.+. .|+ ...+..+..++...|+ +++|...++++.. .|+ ..+|..++..|...|++++|.
T Consensus 165 ~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 165 FVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9988755 455 6777778888888887 7777777777655 243 257778889999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhcC
Q 005317 601 HTAEKILELHPSCAGTHITLANIYAAKG 628 (702)
Q Consensus 601 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 628 (702)
+.++++++++|+++..+..+..+....+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999998888877665554
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=2.2e-13 Score=142.02 Aligned_cols=377 Identities=9% Similarity=0.011 Sum_probs=202.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCCh---HHHHHHHhccCCCCcchHHHHHHHHHhcC---
Q 005317 216 LKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKL---DYSLRLFERMSTRDVISWTTIITSYVQMG--- 289 (702)
Q Consensus 216 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g--- 289 (702)
...+.+.|++++|.++|+...+.|. ...+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 3344556677777777777766652 22333445555556666 77777777776556666766666555554
Q ss_pred --ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchH---HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH---
Q 005317 290 --EEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQ---WGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQL--- 361 (702)
Q Consensus 290 --~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--- 361 (702)
++++|+..|++..+.|. ...+..+...|...+..+ .+.+.+......|. ......+...|...+.+
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccC
Confidence 66788888888887663 224555555555544433 33444444444442 34455566666666643
Q ss_pred -HHHHHHHhcCCCCChhhHHHHHHHHHcCC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHH
Q 005317 362 -TSTSIVFHGMIRRDIISWSTIIGGYSQGG---YEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHV 437 (702)
Q Consensus 362 -~~a~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 437 (702)
+.+..+++.....+..++..|...|...| +.++|++.|++..+.|. ++...+..+...+...
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g------------- 226 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDA------------- 226 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCG-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC-------------
Confidence 34444555555555667777777777777 77777777777776653 2333222233333222
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHchhCCCCCCHHH
Q 005317 438 MSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMING-Y--AEHGYSQEAIHLFEKVPMVGLRPDSVT 514 (702)
Q Consensus 438 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~ 514 (702)
....+++++|...|++....++..+..+... + ...+++++|++.|++..+.| +...
T Consensus 227 ------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 227 ------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp ------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 0111455555555555442244455555555 3 34677777777777777655 4445
Q ss_pred HHHHHHHHhccC-----cHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHH
Q 005317 515 FMGVLTACSHAG-----LVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCR----AGRLSDAENMIENMPHQKDDVVWST 585 (702)
Q Consensus 515 ~~~ll~~~~~~g-----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ 585 (702)
+..+...|. .| ++++|.++|++.. .-+...+..|...|.. ..++++|..+|++.....+......
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~ 359 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFA 359 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHH
Confidence 555555554 44 7777877777664 2245666667766665 3377888888887776656666667
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 586 LLRACMV----QGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 586 l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
|...|.. ..+.++|...++++.+.++.........+......++..+|..+.++-.+
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7777653 45788888888888877653333222222222333456666666665544
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=1.5e-13 Score=133.48 Aligned_cols=241 Identities=6% Similarity=-0.108 Sum_probs=183.7
Q ss_pred cCCChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 005317 388 QGGYEEEAFEYLALMRREGPR--P-NEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKE 464 (702)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 464 (702)
..|++++|+..|+++.+.... | +...+..+...+...|+++.|...++.+.+... .+...+..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 356777788877777765321 1 344566667777777888888888877777643 356677778888888899999
Q ss_pred HHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005317 465 ASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDK 541 (702)
Q Consensus 465 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 541 (702)
|...|++.. +.+...+..+..++...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 988888765 346788999999999999999999999999874 455555555555667789999999999888765
Q ss_pred hCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch
Q 005317 542 YGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQ-K-----DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 542 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
.+++... ..++..+...++.++|...++++... | +...+..++..+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2333444 44777888889999999999998772 2 2578889999999999999999999999999997755
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 005317 616 THITLANIYAAKGRWREAAEVR 637 (702)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~ 637 (702)
.+ +.++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 67788899999998776
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=9.5e-14 Score=129.24 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHH
Q 005317 475 DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGC 553 (702)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 553 (702)
++...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|+..|+++.+. .|+ ...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR---TPRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHH
Confidence 456778889999999999999999999998753 446678889999999999999999999999865 665 788899
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHH
Q 005317 554 MIDLLCRA-----------GRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITL 620 (702)
Q Consensus 554 l~~~~~~~-----------g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 620 (702)
+..++... |++++|+..+++... .| +...|..++..+...|++++|+..++++++++ +++..+..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 99999999 999999999999877 44 57899999999999999999999999999999 899999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhcCCCCCCcccc
Q 005317 621 ANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRESDIDDLDSLVH 698 (702)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~~ 698 (702)
+.+|...|++++|+..++++.+. +|....++..++.+....++..++...+.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--------------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--------------------------APKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999998863 47778888999999888888877766654
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=1.2e-12 Score=127.00 Aligned_cols=224 Identities=12% Similarity=0.010 Sum_probs=158.5
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005317 375 DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALIN 454 (702)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 454 (702)
+..++..+...+...|++++|+..|++..+.+ +...+..+ ..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l-----------------------------------g~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNL-----------------------------------GV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHH-----------------------------------HH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHH-----------------------------------HH
Confidence 45566666777777777777777777766522 22333333 34
Q ss_pred HHHh----cCCHHHHHHHHhhCCC-CCHHHHHHHHHHHHH----cCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhc-
Q 005317 455 MYSK----CGSIKEASQIFYETES-DDIVSWTAMINGYAE----HGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSH- 524 (702)
Q Consensus 455 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 524 (702)
.|.. .+++++|...|++..+ .++..+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 4444 5555555555554332 255566666777777 777778877777777654 55667777777777
Q ss_pred ---cCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 005317 525 ---AGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCR----AGRLSDAENMIENMPHQKDDVVWSTLLRACMV----Q 593 (702)
Q Consensus 525 ---~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 593 (702)
.+++++|.+.|++..+. + +...+..+...|.. .+++++|...|++.....+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 78888888888887654 2 45667777777777 78888888888877665567778888888888 8
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 005317 594 GDVNCGRHTAEKILELHPSCAGTHITLANIYAA----KGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 594 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 645 (702)
+++++|...++++++.+| +..+..++.+|.. .|++++|.+++++..+.|.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888888888888866 6778888888888 8888888888888877654
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2.1e-13 Score=130.57 Aligned_cols=196 Identities=8% Similarity=-0.047 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHh
Q 005317 447 MIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACS 523 (702)
Q Consensus 447 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 523 (702)
..+..+...+...|++++|...|+++. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 345556667777777777777777654 3456777888888888888888888888887653 335667777888888
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHH
Q 005317 524 HAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGR 600 (702)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 600 (702)
..|++++|.++++++.+. +..|+ ...+..++.++...|++++|...++++.. +.+...+..++..+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888751 34554 66777888888888888888888888766 345778888888888899999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 601 HTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 601 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
..++++++..|.+...+..++.++...|++++|.++++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999988888888888888889999999999999888887643
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=2.9e-13 Score=141.15 Aligned_cols=345 Identities=10% Similarity=0.018 Sum_probs=230.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCch---HHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005317 280 TIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARI---QWGEQLHAHVLRLGLVDSLSVANSIMAMYS 356 (702)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (702)
.+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788999999999999998876 333344455555667777 8999999888755 4444555666455
Q ss_pred hcC-----CHHHHHHHHhcCCCC-ChhhHHHHHHHHHcCCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcH
Q 005317 357 KCG-----QLTSTSIVFHGMIRR-DIISWSTIIGGYSQGGYEE---EAFEYLALMRREGPRPNEFAFASVLSVCGNMAIL 427 (702)
Q Consensus 357 ~~g-----~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 427 (702)
..+ ++++|...|++..++ +..++..|...|...+... ++.+.+......|.. .....+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP---EAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCT---THHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCH---HHHHHHHHHHHcCCCc
Confidence 544 778999999887554 4557888888888766544 455555555555532 2333444555555544
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhCC---CCCHHHHHHHHHHHHHc----CChHHHH
Q 005317 428 EQGKQIHAHVMSIGLERTAMIKSALINMYSKCG---SIKEASQIFYETE---SDDIVSWTAMINGYAEH----GYSQEAI 497 (702)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~A~ 497 (702)
+.+........+.-...++..+..+..+|...| +.++|...|++.. .++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 333333222222222333447788999999999 8999999998765 34455557777777654 7999999
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC-----CHHHHHH
Q 005317 498 HLFEKVPMVGLRPDSVTFMGVLTA-C--SHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAG-----RLSDAEN 569 (702)
Q Consensus 498 ~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~ 569 (702)
+.|++.. .| +...+..+... + ...+++++|.++|++..+. | +...+..|...|. .| ++++|..
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999987 33 44455555555 3 5689999999999998765 4 6777888888887 55 9999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHH
Q 005317 570 MIENMPHQKDDVVWSTLLRACMV----QGDVNCGRHTAEKILELHPSCAGTHITLANIYAA----KGRWREAAEVRKMMR 641 (702)
Q Consensus 570 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 641 (702)
+|++.. +.+...+..|...|.. ..++++|...|+++.+. .++.....|+.+|.. ..+.++|..++++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999999 7788899999888776 34999999999998774 567889999999986 458999999999999
Q ss_pred hCCCc
Q 005317 642 SKGVI 646 (702)
Q Consensus 642 ~~~~~ 646 (702)
+.|..
T Consensus 386 ~~g~~ 390 (452)
T 3e4b_A 386 AQDTP 390 (452)
T ss_dssp TTCCH
T ss_pred HCCCH
Confidence 88754
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1e-13 Score=131.85 Aligned_cols=197 Identities=12% Similarity=0.105 Sum_probs=148.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 005317 445 TAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTA 521 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 521 (702)
....+..+...+...|++++|...|+++. ..+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 34455666777778888888888887764 2467788888888999999999999998888753 3456778888888
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHH
Q 005317 522 CSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCG 599 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 599 (702)
+...|++++|.++++++.+. .+.+...+..++..+.+.|++++|...++++.. +.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999988765 123477788888999999999999999988766 44677888899999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 600 RHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 600 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
+..++++++..|+++..+..++.+|...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999987743
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=4.6e-13 Score=125.49 Aligned_cols=196 Identities=13% Similarity=0.048 Sum_probs=157.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHH
Q 005317 446 AMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTAC 522 (702)
Q Consensus 446 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 522 (702)
...+..+...+...|++++|...|+++. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4455566777777777887777777654 3456778888888888899999999888887653 34567788888888
Q ss_pred hcc-CcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH
Q 005317 523 SHA-GLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNC 598 (702)
Q Consensus 523 ~~~-g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 598 (702)
... |++++|...++.+.+. +..|+ ...+..++.++...|++++|...++++.. +.+...+..++..+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 9999999999988762 34454 67788888889999999999999888766 3457788888889999999999
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 599 GRHTAEKILELHP-SCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 599 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
|...++++++..| .++..+..++.++...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999 88888888888899999999999998888754
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=3.4e-13 Score=122.05 Aligned_cols=165 Identities=14% Similarity=0.076 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHH
Q 005317 476 DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCM 554 (702)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 554 (702)
+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|...+..+... .|+ ...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 56788889999999999999999999988753 335578888999999999999999999998754 444 6777888
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHH
Q 005317 555 IDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWRE 632 (702)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 632 (702)
...+...++++.|...+++... +.+...+..++..+...|++++|++.++++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8899999999999999988776 44677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 005317 633 AAEVRKMMRSKG 644 (702)
Q Consensus 633 A~~~~~~~~~~~ 644 (702)
|++.++++.+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999998754
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=4e-13 Score=130.21 Aligned_cols=226 Identities=9% Similarity=-0.014 Sum_probs=185.5
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----HHHHHHHHHHH
Q 005317 414 FASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES--DD----IVSWTAMINGY 487 (702)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~ 487 (702)
+......+...|+++.|...++.+.+.... +...+..+..+|...|++++|...|++..+ ++ ..+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344556788899999999999999886533 455777788899999999999999987654 22 33588999999
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHH
Q 005317 488 AEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSD 566 (702)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 566 (702)
...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+...+...+++++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998753 34557889999999999999999999998874 4665 6777777734445569999
Q ss_pred HHHHHHhCCC-CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhC---CCC-----chhHHHHHHHHHhcCChHHH
Q 005317 567 AENMIENMPH-QK-DDVVWSTLLRACMVQGD---VNCGRHTAEKILELH---PSC-----AGTHITLANIYAAKGRWREA 633 (702)
Q Consensus 567 A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A 633 (702)
|...|+++.. .| +...+..++..+...|+ +++|...++++++.. |+. ...|..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999877 44 47788888888888888 888999999999876 532 25888899999999999999
Q ss_pred HHHHHHHHhCC
Q 005317 634 AEVRKMMRSKG 644 (702)
Q Consensus 634 ~~~~~~~~~~~ 644 (702)
.++++++.+..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998743
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=3.9e-12 Score=123.28 Aligned_cols=227 Identities=9% Similarity=-0.076 Sum_probs=176.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhhHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005317 344 SLSVANSIMAMYSKCGQLTSTSIVFHGMIRR-DIISWSTIIGGYSQ----GGYEEEAFEYLALMRREGPRPNEFAFASVL 418 (702)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 418 (702)
+...+..+...|...|++++|+..|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667788999999999999999999988655 56788889999999 999999999999988765 445555544
Q ss_pred HHHcc----cCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHH----c
Q 005317 419 SVCGN----MAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAE----H 490 (702)
Q Consensus 419 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~ 490 (702)
..+.. .++.++|...++...+. .+...+..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~----------------------------------~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL----------------------------------KYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------------TCHHHHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc----------------------------------CCccHHHHHHHHHHcCCCcc
Confidence 44444 45555555544444332 245566667777777 7
Q ss_pred CChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cC
Q 005317 491 GYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSH----AGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCR----AG 562 (702)
Q Consensus 491 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 562 (702)
+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCc
Confidence 88888888888888755 45566667777776 88999999999988754 2 46778888889988 99
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCc
Q 005317 563 RLSDAENMIENMPHQKDDVVWSTLLRACMV----QGDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 563 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~ 614 (702)
++++|...+++.....+...+..+...|.. .+++++|...++++.+.+|+++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 999999999988775557888889999988 9999999999999999998543
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=1.2e-12 Score=132.06 Aligned_cols=245 Identities=9% Similarity=0.022 Sum_probs=187.2
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHcccCc-HHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005317 376 IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRP-NEFAFASVLSVCGNMAI-LEQGKQIHAHVMSIGLERTAMIKSALI 453 (702)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 453 (702)
..+|..+...+.+.|++++|+..+++..+. .| +...|..+..++...|+ +++|...++.+++.... +...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 346677777777788888888888887774 33 34566666677777775 88888888777776533 566777788
Q ss_pred HHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhc-cCcHH
Q 005317 454 NMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSH-AGLVD 529 (702)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~ 529 (702)
.++...|++++|+..|+++. ..+...|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 88888888888888888765 3577888899999999999999999999988753 3356788888888877 56546
Q ss_pred HH-----HHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcC--CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC------
Q 005317 530 LG-----FHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAG--RLSDAENMIENMPH-QKDDVVWSTLLRACMVQG------ 594 (702)
Q Consensus 530 ~A-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g------ 594 (702)
+| ++.|+++++. .|+ ...|..+..++...| ++++|.+.++++.. +.+...+..++..|...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 5778887754 665 778888888888888 68899998888733 345678888888888764
Q ss_pred ---CHHHHHHHHHHH-HHhCCCCchhHHHHHHHHHhc
Q 005317 595 ---DVNCGRHTAEKI-LELHPSCAGTHITLANIYAAK 627 (702)
Q Consensus 595 ---~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 627 (702)
..++|+++++++ .+++|.....|..++..+..+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258899999999 899998888898888776654
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=3.2e-13 Score=139.41 Aligned_cols=195 Identities=16% Similarity=0.078 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----HHHHHHHHHHHHHcCC--------------------hHHHHH
Q 005317 448 IKSALINMYSKCGSIKEASQIFYETES-----DD----IVSWTAMINGYAEHGY--------------------SQEAIH 498 (702)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 498 (702)
.+..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|.+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344455555555555555555554331 11 2356666666777777 777777
Q ss_pred HHHHchhC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHH
Q 005317 499 LFEKVPMV----GLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYGCMIDLLCRAGRLSDAEN 569 (702)
Q Consensus 499 ~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 569 (702)
.+++.... +-.|. ..++..+...+...|++++|.+.+++..+...-.++ ..++..++.+|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 76665431 11121 235666777777888888888888777643211122 3367777778888888888888
Q ss_pred HHHhCCC----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHhcCChHHHHH
Q 005317 570 MIENMPH----QKD----DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC------AGTHITLANIYAAKGRWREAAE 635 (702)
Q Consensus 570 ~~~~~~~----~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 635 (702)
.+++... .++ ..++..++..+...|++++|...++++++..+.. ...+..++.+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8777654 111 4566777778888888888888888888765433 4577788888888888888888
Q ss_pred HHHHHHh
Q 005317 636 VRKMMRS 642 (702)
Q Consensus 636 ~~~~~~~ 642 (702)
++++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=1.3e-12 Score=131.72 Aligned_cols=226 Identities=9% Similarity=0.028 Sum_probs=193.5
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhhCC---CCCHHHHHHHHHHH
Q 005317 412 FAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGS-IKEASQIFYETE---SDDIVSWTAMINGY 487 (702)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 487 (702)
..|..+...+...|++++|...++.+++... .+...|+.+..++...|+ +++|+..|+++. ..+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3566667778888999999999999998763 357788889999999997 999999999876 35788999999999
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHh-cCCHH
Q 005317 488 AEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCR-AGRLS 565 (702)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~ 565 (702)
...|++++|+..|+++++.. +-+...|..+..++...|++++|++.|+++++. .|+ ...|+.+..++.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999853 346678999999999999999999999999865 665 8889999999999 66657
Q ss_pred HH-----HHHHHhCCC-CC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcC--------
Q 005317 566 DA-----ENMIENMPH-QK-DDVVWSTLLRACMVQG--DVNCGRHTAEKILELHPSCAGTHITLANIYAAKG-------- 628 (702)
Q Consensus 566 ~A-----~~~~~~~~~-~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 628 (702)
+| +..++++.. .| +...|..+...+...| ++++|++.++++ +.+|+++..+..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 477888766 44 6779999999999888 689999999998 889999999999999999975
Q ss_pred -ChHHHHHHHHHH-HhC
Q 005317 629 -RWREAAEVRKMM-RSK 643 (702)
Q Consensus 629 -~~~~A~~~~~~~-~~~ 643 (702)
.+++|+++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 358999999998 553
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=4.6e-13 Score=127.28 Aligned_cols=214 Identities=14% Similarity=0.080 Sum_probs=146.6
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005317 376 IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINM 455 (702)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 455 (702)
...|..+...+...|++++|...|+++.+.. +.+. ..+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~-----------------------------------~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDA-----------------------------------IPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCH-----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccH-----------------------------------HHHHHHHHH
Confidence 3455556666666666666666666665532 1123 333445555
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 005317 456 YSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGF 532 (702)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 532 (702)
+...|++++|...|+++. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 555666666666655543 2356777888888888999999999998888753 446678888888899999999999
Q ss_pred HHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005317 533 HYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELH 610 (702)
Q Consensus 533 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 610 (702)
++++++.+. .+.+...+..++..+.+.|++++|...++++.. +.+..++..++..+...|++++|...++++++.+
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999998765 123477888999999999999999999998876 4457789999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcC
Q 005317 611 PSCAGTHITLANIYAAKG 628 (702)
Q Consensus 611 p~~~~~~~~l~~~~~~~g 628 (702)
|+++..+..++.+....|
T Consensus 224 p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTCHHHHHHHTC------
T ss_pred cchHHHHHHHHHHHhhcc
Confidence 999998888776655443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=3.2e-13 Score=139.78 Aligned_cols=261 Identities=11% Similarity=0.039 Sum_probs=173.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcccCcHHHHHHHHHHHHHh----C-CCCChhHHHHH
Q 005317 382 IIGGYSQGGYEEEAFEYLALMRREGPRPNE----FAFASVLSVCGNMAILEQGKQIHAHVMSI----G-LERTAMIKSAL 452 (702)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 452 (702)
+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|+++.|...++.+.+. + .+.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344444555555555555555443211 11 23444444455555555555555444332 1 11123445556
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---------CCHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHchhC
Q 005317 453 INMYSKCGSIKEASQIFYETES---------DDIVSWTAMINGYAEHGY-----------------SQEAIHLFEKVPMV 506 (702)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~ 506 (702)
...|...|++++|...|++... ....++..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6666677777777666665432 123467777788888888 88888888776531
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 005317 507 ----GLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH- 576 (702)
Q Consensus 507 ----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 576 (702)
+-.+. ..++..+...+...|++++|.+.+++..+...-.++ ...+..+..+|...|++++|...++++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11122 246777888889999999999999988654211112 23778889999999999999999988765
Q ss_pred ---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 577 ---QK----DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC------AGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 577 ---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
.+ ...++..++..+...|++++|...++++++..+.. ...+..++.+|...|++++|..+++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 25678888999999999999999999999875433 458889999999999999999999998763
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=4.5e-12 Score=121.19 Aligned_cols=205 Identities=16% Similarity=0.035 Sum_probs=155.1
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005317 376 IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINM 455 (702)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 455 (702)
...|..+...+...|++++|...|+++.+.. +.+...+.. +...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~-----------------------------------la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAA-----------------------------------LAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHH-----------------------------------HHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHH-----------------------------------HHHH
Confidence 4566777777777777777777777776542 123333433 4445
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 005317 456 YSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD-SVTFMGVLTACSHAGLVDLG 531 (702)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A 531 (702)
|...|++++|.+.|+++. ..+...+..+...+...|++++|.+.++++.+.+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555433 23566777788888889999999999988887334553 45778888889999999999
Q ss_pred HHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005317 532 FHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 532 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
.+.++++.+. .| +...+..++..+...|++++|...++++.. +.+...+..+...+...|++++|.+.++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998765 34 477888999999999999999999998866 45677888889999999999999999999999
Q ss_pred hCCCCchhHHH
Q 005317 609 LHPSCAGTHIT 619 (702)
Q Consensus 609 ~~p~~~~~~~~ 619 (702)
..|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99988776543
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=6.5e-13 Score=133.01 Aligned_cols=261 Identities=15% Similarity=0.079 Sum_probs=173.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHcccCcHHHHHHHHHHHHHh----CCCC-ChhHHHHHHH
Q 005317 383 IGGYSQGGYEEEAFEYLALMRREGPRPN---EFAFASVLSVCGNMAILEQGKQIHAHVMSI----GLER-TAMIKSALIN 454 (702)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~ 454 (702)
...+...|++++|...|+++.+...... ...+..+...+...|+++.|...++.+.+. +..+ ....+..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3444445555555555555544321100 123444444455555555555554443321 1111 2334555666
Q ss_pred HHHhcCCHHHHHHHHhhCCC-----CC----HHHHHHHHHHHHHcCC--------------------hHHHHHHHHHchh
Q 005317 455 MYSKCGSIKEASQIFYETES-----DD----IVSWTAMINGYAEHGY--------------------SQEAIHLFEKVPM 505 (702)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~ 505 (702)
.|...|++++|...+++..+ ++ ..++..+...+...|+ +++|.+.+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 67777777777776665431 12 2367777788888888 8888888877543
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005317 506 V----GLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 506 ~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
. +-.|. ...+..+...+...|++++|.+.+++..+...-.++ ...+..++..+...|++++|...+++...
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11121 246777888889999999999999987654211122 34778889999999999999999988765
Q ss_pred ----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 577 ----QKD----DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC------AGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 577 ----~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.++ ..++..++..+...|++++|...++++++..|.. ...+..++.+|.+.|++++|..+++++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 122 5577888999999999999999999999876433 44888999999999999999999999887
Q ss_pred C
Q 005317 643 K 643 (702)
Q Consensus 643 ~ 643 (702)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 4
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=1e-12 Score=127.48 Aligned_cols=220 Identities=11% Similarity=-0.013 Sum_probs=182.1
Q ss_pred HcccCcHHHHHHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChH
Q 005317 421 CGNMAILEQGKQIHAHVMSIGLE---RTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQ 494 (702)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 494 (702)
....|+++.|...++.+.+.... .+...+..+...+...|++++|...|+++. +.+...|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 34568899999999999886432 246778889999999999999999999875 357889999999999999999
Q ss_pred HHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 005317 495 EAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENM 574 (702)
Q Consensus 495 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 574 (702)
+|+..|+++.+.. +.+...+..+...+...|++++|.+.|+++.+. .|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999998753 345678899999999999999999999999864 566555555566667889999999999776
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 575 PH-QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS----CAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 575 ~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
.. .|+......++..+...++.++|...++++++..|. ++..+..++.+|...|++++|...++++.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 65 333333344777788889999999999999887663 37899999999999999999999999998754
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=7e-13 Score=139.14 Aligned_cols=190 Identities=8% Similarity=-0.015 Sum_probs=164.3
Q ss_pred ChhHHHHHHHHHHhcCCH-HHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHH
Q 005317 445 TAMIKSALINMYSKCGSI-KEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLT 520 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 520 (702)
+...+..+...|...|++ ++|++.|++.. ..+...|..+..+|...|++++|.+.|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 455566666677777777 77777777654 345778999999999999999999999999874 577788889999
Q ss_pred HHhcc---------CcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhc--------CCHHHHHHHHHhCCC-CC---
Q 005317 521 ACSHA---------GLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRA--------GRLSDAENMIENMPH-QK--- 578 (702)
Q Consensus 521 ~~~~~---------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~-~p--- 578 (702)
.+... |++++|++.|+++.+. .|+ ...|..+..+|... |++++|...|+++.. .|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 99999 9999999999999865 565 88899999999998 999999999999887 55
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005317 579 -DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 579 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (702)
+...|..++.++...|++++|.+.|+++++++|+++..+..++.++...|++++|++.+++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7889999999999999999999999999999999999999999999999999999875543
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=1.2e-11 Score=115.74 Aligned_cols=207 Identities=13% Similarity=0.066 Sum_probs=154.0
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005317 375 DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALIN 454 (702)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 454 (702)
+...|..+...+...|++++|...|+++.+.. +.+... +..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-----------------------------------~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELA-----------------------------------WLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH-----------------------------------HHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHH-----------------------------------HHHHHH
Confidence 34456666666666777777777666665532 112333 344555
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHc-CChHHHHHHHHHchhCCCCCC-HHHHHHHHHHHhccCcHH
Q 005317 455 MYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEH-GYSQEAIHLFEKVPMVGLRPD-SVTFMGVLTACSHAGLVD 529 (702)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 529 (702)
.|...|++++|...|+++. ..+...+..+...+... |++++|...++++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5555566666666555543 23566777888888888 999999999988887333444 467888888899999999
Q ss_pred HHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005317 530 LGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--Q-KDDVVWSTLLRACMVQGDVNCGRHTAEK 605 (702)
Q Consensus 530 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (702)
+|.+.++++.+. .|+ ...+..++.++.+.|++++|...++++.. + .+...+..+...+...|+.+.|...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999998765 454 77888999999999999999999998876 4 5677788888888999999999999999
Q ss_pred HHHhCCCCchhHHHH
Q 005317 606 ILELHPSCAGTHITL 620 (702)
Q Consensus 606 ~~~~~p~~~~~~~~l 620 (702)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999888776554
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=2.8e-12 Score=132.27 Aligned_cols=155 Identities=14% Similarity=0.052 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----h
Q 005317 478 VSWTAMINGYAEHGYSQEAIHLFEKVPMVGL-RPD----SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----K 548 (702)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~ 548 (702)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 4667777888888888888888887664210 112 236777888888999999999999887643211112 5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCc
Q 005317 549 EHYGCMIDLLCRAGRLSDAENMIENMPH----QKD----DVVWSTLLRACMVQGDVNCGRHTAEKILELH------PSCA 614 (702)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~ 614 (702)
.++..++..|...|++++|...++++.. .++ ..++..++..+...|++++|...+++++++. +...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 5778889999999999999999988765 122 5578889999999999999999999999874 3335
Q ss_pred hhHHHHHHHHHhcCChHH
Q 005317 615 GTHITLANIYAAKGRWRE 632 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~ 632 (702)
.++..++.++...|+...
T Consensus 348 ~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhHhHH
Confidence 678889999998887643
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=4e-12 Score=119.44 Aligned_cols=182 Identities=9% Similarity=0.020 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHH
Q 005317 476 DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCM 554 (702)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 554 (702)
|+..+......+...|++++|++.|++..+...+++...+..+..++...|++++|++.|++..+ ..|+ ...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHH
Confidence 33444555555555555555555555555433224444444455555555555555555555542 2343 4455555
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CchhHHHHHHH
Q 005317 555 IDLLCRAGRLSDAENMIENMPH-QK-DD-------VVWSTLLRACMVQGDVNCGRHTAEKILELHPS--CAGTHITLANI 623 (702)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~~~-~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 623 (702)
+.+|...|++++|...+++... .| +. ..|..++..+...|++++|++.++++++.+|+ ++..+..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 5555555555555555555544 22 22 33455555555566666666666666666665 55566666666
Q ss_pred HHhcCCh---------------------------HHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHH
Q 005317 624 YAAKGRW---------------------------REAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDI 676 (702)
Q Consensus 624 ~~~~g~~---------------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 676 (702)
|...|+. ++|...+++..+. .|...++
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------------------------~p~~~~~ 216 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------------------------SPNRTEI 216 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------CTTCHHH
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------------CCCCHHH
Confidence 6555555 8999999988773 3666777
Q ss_pred HHHHHHHHHH
Q 005317 677 YRMLDLLASR 686 (702)
Q Consensus 677 ~~~l~~l~~~ 686 (702)
...+..+...
T Consensus 217 ~~~l~~i~~~ 226 (228)
T 4i17_A 217 KQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 7777776543
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=1.5e-09 Score=116.94 Aligned_cols=416 Identities=9% Similarity=0.028 Sum_probs=258.4
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC---hHHHHHHHHHHHHhC-CCCchhHH
Q 005317 172 RNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGA---LNFGREIHTIMLKRG-FDVVSFVA 247 (702)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 247 (702)
.|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ ++.+.++|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46778888888888888888888888888765 44555566666766667777 888888888887764 13677777
Q ss_pred HHHHHHhhhCCCh--------HHHHHHHhccC------CC-CcchHHHHHHHHHh---------cCChhHHHHHHHHHHH
Q 005317 248 NSLATMYSKCGKL--------DYSLRLFERMS------TR-DVISWTTIITSYVQ---------MGEEENAFDAFVRMQE 303 (702)
Q Consensus 248 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~ 303 (702)
...+....+.++. +.+.++|+... .+ +...|...+..... .++++.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7776655554443 23345665421 12 23456666654332 2345667777777664
Q ss_pred CCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhc-------CC----
Q 005317 304 SDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHG-------MI---- 372 (702)
Q Consensus 304 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~---- 372 (702)
.....-..+|..... +.+.-+...+.+++.+.. .+++.|...+.+ +.
T Consensus 223 iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQ-WEQDVNQLTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHH-HHHhcCcchHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhccc
Confidence 211111122211111 111001111112111110 111122222211 10
Q ss_pred C----------C--------ChhhHHHHHHHHHcCC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcH
Q 005317 373 R----------R--------DIISWSTIIGGYSQGG-------YEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAIL 427 (702)
Q Consensus 373 ~----------~--------~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 427 (702)
. | ....|...+.---..+ ..+.+..+|++.... +.-....|.....-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 0134555544333222 123456677777764 233555666666666677888
Q ss_pred HHHH-HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------C------------CHHHHH
Q 005317 428 EQGK-QIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES-------------D------------DIVSWT 481 (702)
Q Consensus 428 ~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~------------~~~~~~ 481 (702)
+.|. .+++..... .+.+...+-.++...-+.|+++.|..+|+++.. | ....|.
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8886 899888864 345666777788888899999999999987653 2 123688
Q ss_pred HHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh
Q 005317 482 AMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSH-AGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCR 560 (702)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 560 (702)
..+....+.|..+.|..+|.+..+.-..+....|...+..-.+ .++.+.|..+|+...+.+ .-+...+...++....
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHh
Confidence 8888888889999999999999875111223334322222223 356899999999998873 2245666788888889
Q ss_pred cCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 005317 561 AGRLSDAENMIENMPH-QK----DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 561 ~g~~~~A~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 614 (702)
.|+.+.|..+|+++.. .| ....|...+..-...|+.+.+..+.+++.+..|+++
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999887 33 346888888888899999999999999999999765
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=3.2e-12 Score=139.28 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHH
Q 005317 476 DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGC 553 (702)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 553 (702)
+..+|+.|..+|.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|++.|+++.+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4568889999999999999999999999874 554 578999999999999999999999999854 676 889999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChH
Q 005317 554 MIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWR 631 (702)
Q Consensus 554 l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 631 (702)
+..+|.+.|++++|++.|+++.+ .| +..+|..++.++...|++++|++.|+++++++|+++..+..|+.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999877 44 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 005317 632 EAAEVRKMMRS 642 (702)
Q Consensus 632 ~A~~~~~~~~~ 642 (702)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988865
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=6.1e-12 Score=113.66 Aligned_cols=166 Identities=12% Similarity=0.036 Sum_probs=144.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 005317 445 TAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTA 521 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 521 (702)
+..+|..+...|.+.|++++|+..|++.. +.++.+|..+..+|...|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 55678888999999999999999998865 3577899999999999999999999999988753 3455677778888
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH
Q 005317 522 CSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNC 598 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 598 (702)
+...++++.|.+.+...... .|+ ...+..+..+|.+.|++++|++.|++... +.+..+|..++.++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999998754 454 78889999999999999999999999877 4467899999999999999999
Q ss_pred HHHHHHHHHHhCCCCc
Q 005317 599 GRHTAEKILELHPSCA 614 (702)
Q Consensus 599 A~~~~~~~~~~~p~~~ 614 (702)
|++.++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999654
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=2.5e-11 Score=109.56 Aligned_cols=163 Identities=18% Similarity=0.089 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHH
Q 005317 478 VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMID 556 (702)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 556 (702)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++.+.+. .| +...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence 356667777888888888888888877642 345667778888888888999999888888754 34 4777888888
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHH
Q 005317 557 LLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAA 634 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 634 (702)
.+...|++++|...++++.. +.+...+..++..+...|++++|...++++++..|.++..+..++.++...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999999888766 4567788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 005317 635 EVRKMMRSKG 644 (702)
Q Consensus 635 ~~~~~~~~~~ 644 (702)
..++++.+..
T Consensus 165 ~~~~~~~~~~ 174 (186)
T 3as5_A 165 PHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 9999987643
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=6.7e-12 Score=131.64 Aligned_cols=179 Identities=12% Similarity=-0.006 Sum_probs=157.9
Q ss_pred HHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCCh-HHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 005317 462 IKEASQIFYETE---SDDIVSWTAMINGYAEHGYS-QEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNL 537 (702)
Q Consensus 462 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 537 (702)
++++...++... ..+...+..+...+...|++ ++|++.|++..+.. +-+...+..+..++...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555665443 34778999999999999999 99999999998753 33567899999999999999999999999
Q ss_pred hHHhhCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc--------CCHHH
Q 005317 538 MSDKYGFVPSKEHYGCMIDLLCRA---------GRLSDAENMIENMPH--QKDDVVWSTLLRACMVQ--------GDVNC 598 (702)
Q Consensus 538 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~--------g~~~~ 598 (702)
+. .+.|+...+..+..+|... |++++|...++++.. +.+...|..++.+|... |++++
T Consensus 163 al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 AL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 98 4578888899999999999 999999999999877 44688999999999998 99999
Q ss_pred HHHHHHHHHHhCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 599 GRHTAEKILELHP---SCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 599 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
|+..++++++++| .++..|..++.+|...|++++|.+.++++.+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999999999999999999998743
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=7.4e-12 Score=128.01 Aligned_cols=193 Identities=11% Similarity=0.067 Sum_probs=128.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----CHHHHHHHHHHHHHcCChHHHHHHHHHchhC----CCCCC-HH
Q 005317 449 KSALINMYSKCGSIKEASQIFYETES-----D-----DIVSWTAMINGYAEHGYSQEAIHLFEKVPMV----GLRPD-SV 513 (702)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 513 (702)
+..+...|...|++++|...+++..+ + ...+++.+..+|...|++++|+..|++..+. +-.+. ..
T Consensus 146 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 225 (383)
T 3ulq_A 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 34444455555555555554444321 1 1246677777888888888888888776642 11111 13
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC------CCC-HHH
Q 005317 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKY---GFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH------QKD-DVV 582 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~p~-~~~ 582 (702)
++..+...+...|++++|.+.+++..+.. +..|+ ..++..++.+|.+.|++++|...+++... .|. ...
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 67778888888888888888888776521 12133 66778888888888998888888887755 111 223
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 583 WSTLLRACMVQGD---VNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 583 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
+..+...+...|+ +++|...+++. ...|.....+..++.+|...|++++|..+++++.+
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567777778888 67777777665 22344566788899999999999999999988865
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=1.3e-11 Score=127.59 Aligned_cols=272 Identities=13% Similarity=-0.014 Sum_probs=179.9
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------ChhhH
Q 005317 312 TFAAIISASANLARIQWGEQLHAHVLRLGLVDS---LSVANSIMAMYSKCGQLTSTSIVFHGMIRR---------DIISW 379 (702)
Q Consensus 312 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~ 379 (702)
.+..+...+...|++++|...++.+.+.+.... ..++..+...|...|++++|+..|++..+. ...++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344455667788888888888888887743221 146677777788888888888777765221 23456
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHcccCc----------HHHHHHHHHHHHHhCCCC
Q 005317 380 STIIGGYSQGGYEEEAFEYLALMRREG----PRP-NEFAFASVLSVCGNMAI----------LEQGKQIHAHVMSIGLER 444 (702)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~ 444 (702)
..+...|...|++++|...+++..+.. ..| ...++..+...+...|+ .+.+...
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~----------- 198 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA----------- 198 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-----------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-----------
Confidence 667777777777777777777765421 011 11233333344444444 0000000
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CC--CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCC-CCC---
Q 005317 445 TAMIKSALINMYSKCGSIKEASQIFYETE-------SD--DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGL-RPD--- 511 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--- 511 (702)
+++|...+++.. .+ ...++..+...+...|++++|+..+++..+... .++
T Consensus 199 -----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 199 -----------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 444444444322 11 234677788888888888888888888764210 011
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC---
Q 005317 512 -SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH----QKD--- 579 (702)
Q Consensus 512 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~--- 579 (702)
...+..+...+...|++++|.+.++++.+...-..+ ..++..+..+|...|++++|...++++.. .++
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 136778888899999999999999887654211111 56778889999999999999999988765 112
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005317 580 -DVVWSTLLRACMVQGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 580 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 611 (702)
..++..+...+...|++++|.+.+++++++.+
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34778889999999999999999999999876
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=8.4e-11 Score=120.14 Aligned_cols=229 Identities=10% Similarity=-0.020 Sum_probs=154.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCC------CChhHHHH
Q 005317 383 IGGYSQGGYEEEAFEYLALMRRE----GPRP-NEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLE------RTAMIKSA 451 (702)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 451 (702)
...+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+.... ....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444555555555555555432 1011 1224444455555555555555555555432111 01235566
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHchhC----CCCCC-HHHHHH
Q 005317 452 LINMYSKCGSIKEASQIFYETES-----DD----IVSWTAMINGYAEHGYSQEAIHLFEKVPMV----GLRPD-SVTFMG 517 (702)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ 517 (702)
+...|...|++++|...|++..+ ++ ..++..+..+|...|++++|++.+++..+. +..|+ ..++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 77777888888888877776542 12 247888899999999999999999888762 33243 457888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCC--CCC-hhhHHHHHHHHHhcCC---HHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 005317 518 VLTACSHAGLVDLGFHYFNLMSDKYGF--VPS-KEHYGCMIDLLCRAGR---LSDAENMIENMPHQK-DDVVWSTLLRAC 590 (702)
Q Consensus 518 ll~~~~~~g~~~~A~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 590 (702)
+...+...|++++|.+.+++..+...- .|. ...+..+...+...|+ +++|..++++....| ....+..++..|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999987654211 121 3346678888999999 899999999986533 345778899999
Q ss_pred HhcCCHHHHHHHHHHHHHhCC
Q 005317 591 MVQGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 591 ~~~g~~~~A~~~~~~~~~~~p 611 (702)
...|++++|...+++++++..
T Consensus 350 ~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998753
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=2e-12 Score=127.98 Aligned_cols=238 Identities=11% Similarity=0.105 Sum_probs=138.6
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHh------C
Q 005317 375 DIISWSTIIGGYSQGGYEEEAFEYLALMRRE-------GPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSI------G 441 (702)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 441 (702)
+..++..+...+...|++++|..+++++.+. ........+..+...+...|+++.|...++.+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3457788888899999999999999888762 11222334555556666666666666666555432 1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhC------CCCCC-HHH
Q 005317 442 LERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMV------GLRPD-SVT 514 (702)
Q Consensus 442 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~ 514 (702)
..+ ....++..+...+...|++++|...++++.+. +-.|+ ...
T Consensus 106 ~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 106 DHP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp TCH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCh------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 111 11234555555566666666666666555432 11222 235
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhh-----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----------CC
Q 005317 515 FMGVLTACSHAGLVDLGFHYFNLMSDKY-----GFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH----------QK 578 (702)
Q Consensus 515 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~p 578 (702)
+..+...+...|++++|.++++++.+.. +..|. ...+..++.+|...|++++|...++++.. .+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 6666667777777777777777665431 11222 44566677777777777777777766553 01
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 579 -------DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 579 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
....+..+...+...+.+.++...++++....|..+..+..++.+|.+.|++++|.++++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112223333344556677777788888888888888899999999999999999999988765
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=3.3e-11 Score=120.48 Aligned_cols=272 Identities=13% Similarity=0.028 Sum_probs=174.3
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------ChhhHH
Q 005317 313 FAAIISASANLARIQWGEQLHAHVLRLGLVDS---LSVANSIMAMYSKCGQLTSTSIVFHGMIRR---------DIISWS 380 (702)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~ 380 (702)
+......+...|++++|...++.+.+...... ..++..+...|...|++++|...+++.... ...++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445567788888888888888887643211 356667777788888888887777665221 234566
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHcccCc-------------HHHHHHHHHHHHHhCC
Q 005317 381 TIIGGYSQGGYEEEAFEYLALMRREGP-RPN----EFAFASVLSVCGNMAI-------------LEQGKQIHAHVMSIGL 442 (702)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~-------------~~~a~~~~~~~~~~~~ 442 (702)
.+...+...|++++|...+++..+... .++ ..++..+...+...|+ .+.+...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--------- 158 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA--------- 158 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH---------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH---------
Confidence 667777777777777777776654210 111 1133333344444444 0000000
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCC-CCC-
Q 005317 443 ERTAMIKSALINMYSKCGSIKEASQIFYETES-----D----DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGL-RPD- 511 (702)
Q Consensus 443 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 511 (702)
+++|...+++... + ....+..+...+...|++++|...+++..+... .++
T Consensus 159 -------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 159 -------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 4444444433221 1 134667777788888888888888887664210 111
Q ss_pred ---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-
Q 005317 512 ---SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH----QKD- 579 (702)
Q Consensus 512 ---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~- 579 (702)
..++..+...+...|++++|.+.+++..+...-.++ ..++..+...+...|++++|...++++.. .++
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 236777888888999999999999887653211112 55677888999999999999999988765 112
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005317 580 ---DVVWSTLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 580 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
..++..+...+...|++++|...+++++++.+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 447788899999999999999999999998763
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=2.2e-10 Score=113.00 Aligned_cols=182 Identities=13% Similarity=0.112 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHH-HHHHHHHHHHHcCChHHHHHHHHHc
Q 005317 428 EQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES--D-DIV-SWTAMINGYAEHGYSQEAIHLFEKV 503 (702)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m 503 (702)
++|..+++...+.-.+.+...+..++..+.+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44444444444421122333444444444444555555554444332 1 122 4444444445555555555555554
Q ss_pred hhCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----C
Q 005317 504 PMVGLRPDSVTFMGVLTACS-HAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH----Q 577 (702)
Q Consensus 504 ~~~g~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 577 (702)
.+.. +++...|........ ..|++++|.++|+.+.+. .| +...|..++..+.+.|++++|..+|+++.. +
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 4421 112222222211111 134555555555554433 22 244444444455555555555555544433 1
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005317 578 K--DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC 613 (702)
Q Consensus 578 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 613 (702)
| ....|..++......|+.+.|..+++++++..|++
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 1 23344444444445555555555555555555443
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1e-09 Score=111.59 Aligned_cols=258 Identities=14% Similarity=0.027 Sum_probs=162.9
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHcccCcHHHHHHHHHHHHHhCCC-CC----hhHHHHHHHH
Q 005317 385 GYSQGGYEEEAFEYLALMRREGPRPNEF----AFASVLSVCGNMAILEQGKQIHAHVMSIGLE-RT----AMIKSALINM 455 (702)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~ 455 (702)
.+...|++++|...+++........+.. .+..+...+...|+++.|...++........ .+ ...+..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555554432211211 2333334445556666666555554432110 01 1224456666
Q ss_pred HHhcCCHHHHHHHHhhCCC----------C-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCC--C--CHHHHHHHHH
Q 005317 456 YSKCGSIKEASQIFYETES----------D-DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLR--P--DSVTFMGVLT 520 (702)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~~~ll~ 520 (702)
+...|++++|...+++... + ....+..+...+...|++++|...+++.....-. + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 7777777777777765431 1 1235666777888889999999888887643211 1 1245677778
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHhCCC-CCC-----HHHHHHHHHH
Q 005317 521 ACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYG-----CMIDLLCRAGRLSDAENMIENMPH-QKD-----DVVWSTLLRA 589 (702)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~-~p~-----~~~~~~l~~~ 589 (702)
.+...|++++|...+++......-......+. ..+..+...|++++|...+++... .|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88889999999999988765421111111222 233457789999999999998876 221 2356677888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 590 CMVQGDVNCGRHTAEKILELHPSC------AGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 590 ~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
+...|++++|...++++++..+.. ...+..++.++...|++++|...+++...
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 889999999999999998765321 24677789999999999999999888765
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=1.9e-10 Score=113.34 Aligned_cols=179 Identities=11% Similarity=0.039 Sum_probs=149.0
Q ss_pred HHHHHHHHhhCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH-H-HHHHHHHHHhccCcHHHHHHHH
Q 005317 462 IKEASQIFYETES----DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS-V-TFMGVLTACSHAGLVDLGFHYF 535 (702)
Q Consensus 462 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~A~~~~ 535 (702)
.++|..+|++... .+...|..++..+...|++++|.++|+++.+ +.|+. . .|..++..+.+.|++++|..+|
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3899999987543 3567899999999999999999999999997 45653 3 7888999999999999999999
Q ss_pred HHhHHhhCCCCC-hhhHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--
Q 005317 536 NLMSDKYGFVPS-KEHYGCMIDLLC-RAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILEL-- 609 (702)
Q Consensus 536 ~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 609 (702)
+++.+. .|+ ...|...+.... ..|++++|..+|+++.. +.+...|..++..+...|++++|..+|+++++.
T Consensus 158 ~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 158 KKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 999843 444 555544443322 37999999999999877 456789999999999999999999999999996
Q ss_pred -CCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005317 610 -HPS-CAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 610 -~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
.|+ ....|..++..+.+.|+.++|..+++++.+..+
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 453 667899999999999999999999999988654
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=2.8e-08 Score=106.96 Aligned_cols=148 Identities=11% Similarity=0.018 Sum_probs=90.8
Q ss_pred ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCC---hhHHH
Q 005317 87 DSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGK---IELGC 163 (702)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 163 (702)
...+.+..|++....+ +-|...|..++..+...+.++.+..+++.++.. ++.+...|...+..-.+.|+ ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3444555555555443 567778888888888888888888888888776 35566777777777777777 88888
Q ss_pred HHhccCC--C---CCcchHHHHHHHHHhCCCh--------HHHHHHHHHHHH-CCC-CCCh-hhHHHHHHHHhc------
Q 005317 164 RVFDEMP--L---RNVVSWTAIITGLVRAGHN--------KEGLIYFAEMWR-SKE-QGDS-YTFAIVLKASAD------ 221 (702)
Q Consensus 164 ~~~~~~~--~---~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~~------ 221 (702)
.+|++.. . |++..|..-+....+.++. +.+.++|+.... .|. .|+. ..|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 8887654 2 6666777766655554443 223356665543 344 4433 345555544321
Q ss_pred ---cCChHHHHHHHHHHHH
Q 005317 222 ---SGALNFGREIHTIMLK 237 (702)
Q Consensus 222 ---~~~~~~a~~~~~~~~~ 237 (702)
.++++.+..+|+.++.
T Consensus 204 ~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 2335566666766664
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=1.6e-10 Score=108.45 Aligned_cols=205 Identities=8% Similarity=0.016 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHH
Q 005317 410 NEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMING 486 (702)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 486 (702)
|...+......+...|++++|...++.+.+...+++...+..+..++...|++++|...|++.. +.+...|..+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4456666667777777888888877777776654555555557777777777777777777654 2345567777777
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---hhhHHHHHH
Q 005317 487 YAEHGYSQEAIHLFEKVPMVGLRPDS-------VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS---KEHYGCMID 556 (702)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~ 556 (702)
+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|+++. .+.|+ ...+..+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHHH
Confidence 777777777777777776532 2233 335556666667777777777777765 33554 455566666
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 557 LLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
+|...|+. +++++.. ..+...+.... ....+.+++|+..++++++++|+++.+...+..+..
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 66554432 2222222 12223332222 234455799999999999999999988888876643
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=7.8e-11 Score=128.42 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=139.8
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHH
Q 005317 509 RPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWS 584 (702)
Q Consensus 509 ~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~ 584 (702)
.|+ ...++.+...+...|++++|++.|+++.+. .|+ ...|..+..+|.+.|++++|+..|+++.+ .| +..+|.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 454 468999999999999999999999999854 676 88999999999999999999999999877 44 578999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEE
Q 005317 585 TLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFV 664 (702)
Q Consensus 585 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (702)
.++.++...|++++|++.|+++++++|+++..|..++.+|.+.|++++|++.++++.+.
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--------------------- 140 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--------------------- 140 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------
Confidence 99999999999999999999999999999999999999999999999999999998873
Q ss_pred cCCCCCCChhHHHHHHHHHHHHhcCCCCCC
Q 005317 665 SSDRRHSQGEDIYRMLDLLASRESDIDDLD 694 (702)
Q Consensus 665 ~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~ 694 (702)
+|...+.+..++.+....++|.++.
T Consensus 141 -----~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 141 -----KPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp -----CSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred -----CCCChHHHhhhhhHHHhcccHHHHH
Confidence 4667778888888888888776654
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.2e-11 Score=122.34 Aligned_cols=246 Identities=8% Similarity=0.042 Sum_probs=154.7
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHC------
Q 005317 343 DSLSVANSIMAMYSKCGQLTSTSIVFHGMIR--------R---DIISWSTIIGGYSQGGYEEEAFEYLALMRRE------ 405 (702)
Q Consensus 343 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------ 405 (702)
....++..+...|...|++++|...|+++.+ . ...++..+...|...|++++|...+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3467788999999999999999999998744 2 3457888999999999999999999998764
Q ss_pred CCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHH
Q 005317 406 GPRP-NEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMI 484 (702)
Q Consensus 406 g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 484 (702)
+..| ....+..+...+...|+++.|...++.+.+.... .+..-.......+..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------------------~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK------------------------VLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH------------------------hcCCCChHHHHHHHHHH
Confidence 2223 2346666777777788888888777766543100 00000000123455566
Q ss_pred HHHHHcCChHHHHHHHHHchhC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh------CCCCC-hhh
Q 005317 485 NGYAEHGYSQEAIHLFEKVPMV------GLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKY------GFVPS-KEH 550 (702)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-~~~ 550 (702)
..+...|++++|++.++++.+. +..|+ ..++..+...+...|++++|.++++++.+.. ...+. ...
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 6666667777777666666542 11232 2466777777888888888888888776431 11222 111
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005317 551 ------YGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 551 ------~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
+..+...+...+.+.+|...++.... .| ...++..++..|...|++++|.+.+++++++.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 22223334445556666666666655 23 4568889999999999999999999999998774
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=3.5e-10 Score=101.91 Aligned_cols=167 Identities=11% Similarity=-0.014 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHh
Q 005317 447 MIKSALINMYSKCGSIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACS 523 (702)
Q Consensus 447 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 523 (702)
..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455677888899999999999998874 467889999999999999999999999998753 446678888999999
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 005317 524 HAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRH 601 (702)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 601 (702)
..|++++|.++++++.+. .+.+...+..++.++...|++++|...++++.. +.+...+..++..+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999865 233578888999999999999999999999876 4467889999999999999999999
Q ss_pred HHHHHHHhCCCCchh
Q 005317 602 TAEKILELHPSCAGT 616 (702)
Q Consensus 602 ~~~~~~~~~p~~~~~ 616 (702)
.++++++..|++...
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999999877643
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=1.3e-10 Score=118.50 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=124.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----CHHHHHHHHHHHHHcCChHHHHHHHHHchhC----CCCC-CHH
Q 005317 449 KSALINMYSKCGSIKEASQIFYETES-----D-----DIVSWTAMINGYAEHGYSQEAIHLFEKVPMV----GLRP-DSV 513 (702)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 513 (702)
+..+...|...|+++.|...+++..+ + ...+++.+..+|...|++++|.+.|++..+. +-++ ...
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555555555555555544321 1 1346667777788888888888877776542 1111 123
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhC--CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC------CCC-HHHH
Q 005317 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKYG--FVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH------QKD-DVVW 583 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~p~-~~~~ 583 (702)
++..+...+...|++++|.+.+++..+... ..|. ..++..++.++.+.|++++|...+++... .|. ...+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 667777888888888888888887765110 1233 56677788888888888888888877644 122 2345
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 584 STLLRACMVQGD---VNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 584 ~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
..+...+...|+ +.+|...+++. ...|.....+..++.+|...|++++|..+++++.+
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555666667777 66666666652 12244456777889999999999999998888765
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=2.7e-09 Score=108.62 Aligned_cols=229 Identities=14% Similarity=0.044 Sum_probs=159.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHcccCcHHHHHHHHHHHHHhCC-----C-CChhHHH
Q 005317 382 IIGGYSQGGYEEEAFEYLALMRREGP-RPN----EFAFASVLSVCGNMAILEQGKQIHAHVMSIGL-----E-RTAMIKS 450 (702)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 450 (702)
....+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+....+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 33445566777777777766654210 111 23455555666667777777766666554211 1 1234566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHchhC----CCCCCHHHHHH
Q 005317 451 ALINMYSKCGSIKEASQIFYETES-----DD----IVSWTAMINGYAEHGYSQEAIHLFEKVPMV----GLRPDSVTFMG 517 (702)
Q Consensus 451 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ 517 (702)
.+...|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|++.+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 677788888888888887776542 12 346788889999999999999999888761 22223567888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCC---HHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 005317 518 VLTACSHAGLVDLGFHYFNLMSDKYGFVPS---KEHYGCMIDLLCRAGR---LSDAENMIENMPHQK-DDVVWSTLLRAC 590 (702)
Q Consensus 518 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 590 (702)
+...+...|++++|.+.+++..+...-.++ ...+..+...+...|+ +++|..++++....| ....+..++..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 899999999999999999998765322222 3456667777888888 899999999865533 345677889999
Q ss_pred HhcCCHHHHHHHHHHHHHhC
Q 005317 591 MVQGDVNCGRHTAEKILELH 610 (702)
Q Consensus 591 ~~~g~~~~A~~~~~~~~~~~ 610 (702)
...|++++|...++++++..
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=5.4e-11 Score=102.98 Aligned_cols=121 Identities=10% Similarity=-0.023 Sum_probs=82.8
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 005317 519 LTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGD 595 (702)
Q Consensus 519 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~ 595 (702)
...+...|++++|++.+.... ...|+ ...+..+..+|.+.|++++|++.|+++.. +.+..+|..++..+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344556677777777777664 23444 44555677777777777777777777665 3356677777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 005317 596 VNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEV-RKMMRS 642 (702)
Q Consensus 596 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 642 (702)
+++|+..|+++++++|+++..+..++.+|.+.|++++|.+. ++++.+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777765554 466654
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.22 E-value=3.2e-10 Score=108.87 Aligned_cols=84 Identities=13% Similarity=0.081 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCe
Q 005317 584 STLLRACMVQGDVNCGRHTAEKILELHPSC---AGTHITLANIYAAK----------GRWREAAEVRKMMRSKGVIKEPG 650 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~ 650 (702)
..++..+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++++.+..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----- 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----- 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----
Confidence 567888999999999999999999999985 45889999999977 999999999999987532
Q ss_pred eeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhcCC
Q 005317 651 WSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRESDI 690 (702)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~ 690 (702)
.+|...+....+..+....+..
T Consensus 227 ------------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 ------------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp ------------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CChHHHHHHHHHHHHHHHHHHh
Confidence 2355566677777777776665
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=5.9e-11 Score=102.74 Aligned_cols=142 Identities=8% Similarity=-0.037 Sum_probs=115.9
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHh
Q 005317 483 MINGYAEHGYSQEAIHLFEKVPMVGLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCR 560 (702)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 560 (702)
|...+...|++++|++.+++.... .|+ ...+..+...|...|++++|++.|++..+. .|+ ...|..+..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 344455667888888888887653 343 346667888899999999999999998854 665 8889999999999
Q ss_pred cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCchhHHHHHHHHHhcCC
Q 005317 561 AGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHT-AEKILELHPSCAGTHITLANIYAAKGR 629 (702)
Q Consensus 561 ~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 629 (702)
.|++++|...|+++.. .| +..+|..++..+...|++++|.+. ++++++++|+++.+|...+.++...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999877 44 578999999999999998776655 699999999999999999999998886
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=2.9e-09 Score=99.38 Aligned_cols=180 Identities=12% Similarity=0.034 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHH----HHHH
Q 005317 448 IKSALINMYSKCGSIKEASQIFYETES--DD----IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSV----TFMG 517 (702)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ 517 (702)
.+..+...+.+.|++++|...|+++.. |+ ...+..+..++.+.|++++|+..|+++.+. .|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 334455566666777777777666542 21 235556666666677777777777666653 23221 2333
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 005317 518 VLTACSH------------------AGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPHQK 578 (702)
Q Consensus 518 ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 578 (702)
+..++.. .|++++|...|+++.+. .|+ ...+........-.+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~-------------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRL-------------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHH--------------
Confidence 3333332 34555555555555432 333 21111111100000000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 005317 579 DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCA---GTHITLANIYAAKGRWREAAEVRKMMRSKGVIK 647 (702)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 647 (702)
......++..+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...++..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01113466778899999999999999999999886 579999999999999999999999998876644
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=9.4e-10 Score=106.73 Aligned_cols=222 Identities=13% Similarity=0.164 Sum_probs=144.6
Q ss_pred cccCcHHHHHHHHHHHHHh-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CCHHHHHHH
Q 005317 422 GNMAILEQGKQIHAHVMSI-------GLERTAMIKSALINMYSKCGSIKEASQIFYETES-----------DDIVSWTAM 483 (702)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 483 (702)
...|+++.|...+++..+. ..+....++..+...|...|++++|...|++... ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777666542 2223456777788888888888888888876541 124567778
Q ss_pred HHHHHHcCChHHHHHHHHHchhC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh-----CCCCC-hhh
Q 005317 484 INGYAEHGYSQEAIHLFEKVPMV------GLRP-DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKY-----GFVPS-KEH 550 (702)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~ 550 (702)
...|...|++++|.+.+++.... .-.| ...++..+...+...|++++|.++++++.+.. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888887653 1123 23567777888888888888888888876431 11222 566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC----------CC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhCCCC
Q 005317 551 YGCMIDLLCRAGRLSDAENMIENMPH----------QK-DDVVWSTLLRACMVQGD------VNCGRHTAEKILELHPSC 613 (702)
Q Consensus 551 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~p~~ 613 (702)
+..++.+|...|++++|..+++++.. .+ ....|..+...+...+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 77788888888888888888877654 11 12233333333333222 333333333333334556
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 614 AGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
+..+..++.+|...|++++|..+++++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678999999999999999999999998763
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=9.5e-09 Score=97.92 Aligned_cols=174 Identities=7% Similarity=-0.039 Sum_probs=101.7
Q ss_pred HHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005317 465 ASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP-DSVTFMGVLTACSHAGLVDLGFHYFNLMSD 540 (702)
Q Consensus 465 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 540 (702)
|...|++.. .++...+..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555443 2344444566666667777777777776665443212 234555666666777777777777777653
Q ss_pred hhCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Q 005317 541 KYGFVP-----SKEHYGCMIDL--LCRAG--RLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVNCGRHTAEKILEL- 609 (702)
Q Consensus 541 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 609 (702)
. .| +..+...|+.+ ....| ++.+|..+|+++.. .|+..+-..++.++.+.|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 45 23333344433 22233 67777777777655 344233333444666777777777777766655
Q ss_pred ---------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 610 ---------HPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 610 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
+|+++.++.+++.+....|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 36677777666666666665 667777777664
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=4.1e-10 Score=109.93 Aligned_cols=187 Identities=11% Similarity=0.072 Sum_probs=127.9
Q ss_pred HHHhcCCHHHHHHHHhhCCC-------C--CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCC---CCC--HHHHHHHHH
Q 005317 455 MYSKCGSIKEASQIFYETES-------D--DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGL---RPD--SVTFMGVLT 520 (702)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~ 520 (702)
.|...|++++|...|.+... + ...+|+.+..+|...|++++|+..|++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666554331 1 135677788888888888888888877764210 111 246778888
Q ss_pred HHhcc-CcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC---H-----HHHHHH
Q 005317 521 ACSHA-GLVDLGFHYFNLMSDKYGFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD---D-----VVWSTL 586 (702)
Q Consensus 521 ~~~~~-g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~---~-----~~~~~l 586 (702)
.|... |++++|++.|++..+...-..+ ..++..++..+.+.|++++|+..|+++.. .|+ . ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999988754211111 35678889999999999999999998765 222 1 156778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCchh-----HHHHHHHHH--hcCChHHHHHHHHHHH
Q 005317 587 LRACMVQGDVNCGRHTAEKILELHPSCAGT-----HITLANIYA--AKGRWREAAEVRKMMR 641 (702)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~ 641 (702)
+.++...|++++|+..++++++++|..... +..++..+. ..+++++|+..++++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888999999999999999999999876553 344566664 4577888888886543
No 91
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.11 E-value=7.4e-10 Score=92.35 Aligned_cols=99 Identities=10% Similarity=0.084 Sum_probs=75.0
Q ss_pred CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHH
Q 005317 544 FVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITL 620 (702)
Q Consensus 544 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 620 (702)
+.|+ ...+...+..|.+.|++++|++.|+++.. +.+...|..++.++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4555 45666677777777777777777777665 34566777777778888888888888888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 005317 621 ANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
+.+|...|++++|++.++++.+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877765
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=2.9e-09 Score=89.95 Aligned_cols=128 Identities=21% Similarity=0.257 Sum_probs=91.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHh
Q 005317 515 FMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMV 592 (702)
Q Consensus 515 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~ 592 (702)
+..+...+...|++++|..+++.+.+. . +.+...+..++..+...|++++|..+++++.. +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 444555566666666666666666543 1 12355566666666677777777777666554 3355677778888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 593 QGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 593 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
.|++++|...++++++..|.++..+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888899999988888877643
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=7.5e-09 Score=98.62 Aligned_cols=181 Identities=10% Similarity=0.093 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHch
Q 005317 430 GKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES-----DDIVSWTAMINGYAEHGYSQEAIHLFEKVP 504 (702)
Q Consensus 430 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (702)
+...++.....+ .++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455444433 33444445677788888889999888887632 245677888899999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005317 505 MVGLRP-----DSVTFMGVLTA--CSHAG--LVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMP 575 (702)
Q Consensus 505 ~~g~~p-----~~~~~~~ll~~--~~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 575 (702)
+ ..| +..+...+..+ ....| ++..|..+|+++.++ .|+..+-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 367 35566666666 33334 899999999999754 4553344445558999999999999998654
Q ss_pred C------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHH
Q 005317 576 H------------QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHI 618 (702)
Q Consensus 576 ~------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 618 (702)
+ +.++.++..++......|+ .|.++++++.+..|+++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 4 2355667677767677787 889999999999999987664
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=2.8e-09 Score=102.23 Aligned_cols=186 Identities=12% Similarity=0.023 Sum_probs=135.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---HHHHHHHHHHHHHcCChHHHHHHHHHchhCCC-CCC-HHHHH
Q 005317 445 TAMIKSALINMYSKCGSIKEASQIFYETES--D-D---IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGL-RPD-SVTFM 516 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~ 516 (702)
+...+-.+...+.+.|++++|...|+++.. | + ...+..+..+|...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444566677777888888888877653 2 3 56777788888888888888888888876421 112 24566
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhHHhhCCCCC-hhhH-----------------HHHHHHHHhcCCHHHHHHH
Q 005317 517 GVLTACSH--------AGLVDLGFHYFNLMSDKYGFVPS-KEHY-----------------GCMIDLLCRAGRLSDAENM 570 (702)
Q Consensus 517 ~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 570 (702)
.+..++.. .|++++|+..|+++.+. .|+ .... ..++.+|.+.|++++|+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66777777 88888888888888765 343 2333 5568889999999999999
Q ss_pred HHhCCC-CCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCCch---hHHHHHHHHHhcCChHH
Q 005317 571 IENMPH-QKD----DVVWSTLLRACMVQ----------GDVNCGRHTAEKILELHPSCAG---THITLANIYAAKGRWRE 632 (702)
Q Consensus 571 ~~~~~~-~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~ 632 (702)
|+++.. .|+ ...+..++.++... |++++|+..++++++..|+++. ....+..++.+.|++++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 999876 343 45777888888766 8999999999999999998864 45556666666665554
Q ss_pred H
Q 005317 633 A 633 (702)
Q Consensus 633 A 633 (702)
+
T Consensus 251 ~ 251 (261)
T 3qky_A 251 D 251 (261)
T ss_dssp C
T ss_pred h
Confidence 3
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=3.1e-09 Score=103.25 Aligned_cols=177 Identities=8% Similarity=-0.053 Sum_probs=142.4
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005317 462 IKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDK 541 (702)
Q Consensus 462 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 541 (702)
.+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|.+.++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444555555555566677788888999999999999999988752 335568888899999999999999999988744
Q ss_pred hCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--chh
Q 005317 542 YGFVPSKEHYG-CMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC--AGT 616 (702)
Q Consensus 542 ~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 616 (702)
.|+..... .....+...++.++|...+++... +.+...+..+...+...|++++|+..++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 56644332 233346677888889999888776 4467899999999999999999999999999999988 889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 617 HITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
+..++.+|...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999998887653
No 96
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.06 E-value=5.8e-08 Score=98.54 Aligned_cols=121 Identities=11% Similarity=0.164 Sum_probs=65.2
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCCC-hhhHHHHHHHH
Q 005317 486 GYAEHGYSQEAIHLFEKVPMVGLRPD---SVTFMGVLTACSHAGLVDLGFHYFNLMSDKY---GFVPS-KEHYGCMIDLL 558 (702)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~ 558 (702)
.+...|++++|...+++.......++ ...+..+...+...|++++|...++.+.... +..++ ...+..+..++
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 35566777777777666654321111 1234555666667777777777776654321 21222 23556667777
Q ss_pred HhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005317 559 CRAGRLSDAENMIENMPHQ-KDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
...|+.++|...+++...- +. ......+...| +....+++.+....|.
T Consensus 304 ~~~g~~~~A~~~l~~al~~~~~----~g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALKLANR----TGFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH----HCCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHhCCHHHHHHHHHHHHHHhcc----ccHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 7777777777777766541 10 01112223333 4555566666666653
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=5.8e-10 Score=122.39 Aligned_cols=168 Identities=11% Similarity=-0.021 Sum_probs=99.3
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhcc
Q 005317 457 SKCGSIKEASQIFYETE-----------SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHA 525 (702)
Q Consensus 457 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 525 (702)
...|++++|++.|++.. ..+...+..+..++...|++++|++.|+++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44555555555555443 2344556666666666666666666666666532 22345566666666666
Q ss_pred CcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005317 526 GLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHT 602 (702)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 602 (702)
|++++|++.|+++.+. .|+ ...+..+..+|.+.|++++ ...|+++.. +.+...|..++.++...|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666543 443 5556666666666666666 666666554 23455666666666666666666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHhcCC
Q 005317 603 AEKILELHPSCAGTHITLANIYAAKGR 629 (702)
Q Consensus 603 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 629 (702)
|+++++++|++...+..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666666666666666666666655444
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.04 E-value=1e-09 Score=94.30 Aligned_cols=102 Identities=8% Similarity=-0.058 Sum_probs=92.2
Q ss_pred CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHH
Q 005317 543 GFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHIT 619 (702)
Q Consensus 543 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 619 (702)
.+.|+ ...+..+...+.+.|++++|...|+++.. +.+...|..++.++...|++++|+..|+++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 55665 66788888999999999999999999877 4468899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 620 LANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
++.+|...|++++|+..|+++.+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998754
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=1.7e-08 Score=92.98 Aligned_cols=172 Identities=10% Similarity=-0.009 Sum_probs=142.0
Q ss_pred HHHHHhhCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 005317 465 ASQIFYETE-SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAG----LVDLGFHYFNLMS 539 (702)
Q Consensus 465 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~ 539 (702)
|.+.|++.. ..++..+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444332 3467788888888888999999999999988765 55667777777777 6 8999999999986
Q ss_pred HhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 005317 540 DKYGFVPSKEHYGCMIDLLCR----AGRLSDAENMIENMPHQKD----DVVWSTLLRACMV----QGDVNCGRHTAEKIL 607 (702)
Q Consensus 540 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 607 (702)
+. -+...+..|...|.. .+++++|..+|++.....+ +..+..|...|.. .+++++|+..++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 54 257788888888887 8899999999999988443 7899999999988 889999999999999
Q ss_pred HhCCCCchhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 005317 608 ELHPSCAGTHITLANIYAAK-G-----RWREAAEVRKMMRSKGV 645 (702)
Q Consensus 608 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 645 (702)
+. |.++..+..|+.+|... | ++++|..++++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 66888999999999865 3 89999999999988764
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=2.2e-09 Score=95.86 Aligned_cols=156 Identities=10% Similarity=0.032 Sum_probs=98.5
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHH-HHhc
Q 005317 483 MINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDL-LCRA 561 (702)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~ 561 (702)
+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+... .|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3444555555566655555555421 223345555555555566666666666555432 2322222211111 1122
Q ss_pred CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhcCChHHHHHHH
Q 005317 562 GRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC--AGTHITLANIYAAKGRWREAAEVR 637 (702)
Q Consensus 562 g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 637 (702)
+...+|...+++... .| +...+..++..+...|++++|+..++++++.+|+. +..+..++.++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222345666666655 44 57788889999999999999999999999999865 558999999999999999999998
Q ss_pred HHHHh
Q 005317 638 KMMRS 642 (702)
Q Consensus 638 ~~~~~ 642 (702)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=3.5e-09 Score=114.23 Aligned_cols=159 Identities=9% Similarity=-0.015 Sum_probs=125.4
Q ss_pred cCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005317 459 CGSIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYF 535 (702)
Q Consensus 459 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 535 (702)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999988763 467889999999999999999999999998753 335678888999999999999999999
Q ss_pred HHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHh
Q 005317 536 NLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQ---GDVNCGRHTAEKILEL 609 (702)
Q Consensus 536 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 609 (702)
++..+. .|+ ...+..+..+|.+.|++++|.+.++++.. +.+...+..++..+... |++++|.+.++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999865 454 78889999999999999999999999876 34577888999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 005317 610 HPSCAGTHITLA 621 (702)
Q Consensus 610 ~p~~~~~~~~l~ 621 (702)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999998888877
No 102
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.99 E-value=1.9e-09 Score=92.81 Aligned_cols=102 Identities=12% Similarity=0.011 Sum_probs=88.8
Q ss_pred CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHH
Q 005317 543 GFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHIT 619 (702)
Q Consensus 543 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 619 (702)
.+.|+ ...+..+...+.+.|++++|...|+++.. +.+...|..++.++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44554 66677788889999999999999998766 4467888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 620 LANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
++.+|...|++++|...++++.+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999987643
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=1.4e-08 Score=85.52 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHH
Q 005317 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLL 558 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 558 (702)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... . +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 46677888888899999999998887653 345667788888888899999999999988755 1 23467788888999
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005317 559 CRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
...|++++|...++++.. +.+...+..++..+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999988766 346778888999999999999999999999999885
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=7e-09 Score=101.12 Aligned_cols=172 Identities=10% Similarity=-0.018 Sum_probs=140.0
Q ss_pred CHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 005317 461 SIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMV----GLRPD-SVTFMGVLTACSHAGLVDLGFHYF 535 (702)
Q Consensus 461 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~ 535 (702)
++++|...|++. +..|...|++++|++.|++..+. |-+++ ..+|+.+..+|...|++++|+..|
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 588888877654 56788899999999999887652 32222 358889999999999999999999
Q ss_pred HHhHHhhCCCCC----hhhHHHHHHHHHhc-CCHHHHHHHHHhCCC-CC---C----HHHHHHHHHHHHhcCCHHHHHHH
Q 005317 536 NLMSDKYGFVPS----KEHYGCMIDLLCRA-GRLSDAENMIENMPH-QK---D----DVVWSTLLRACMVQGDVNCGRHT 602 (702)
Q Consensus 536 ~~~~~~~~~~p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-~p---~----~~~~~~l~~~~~~~g~~~~A~~~ 602 (702)
++..+...-..+ ..++..+..+|... |++++|+..|++... .| + ..++..++..+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988754211112 45788899999996 999999999998876 12 1 35788899999999999999999
Q ss_pred HHHHHHhCCCCch-------hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 603 AEKILELHPSCAG-------THITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 603 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
++++++..|++.. .+..++.++...|++++|+..+++..+.
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999987754 5788999999999999999999998764
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1.4e-08 Score=98.67 Aligned_cols=154 Identities=12% Similarity=-0.003 Sum_probs=129.5
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHH
Q 005317 509 RPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTL 586 (702)
Q Consensus 509 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l 586 (702)
+.+...+..+...+...|++++|.+.|+++.+. .|+ ...+..++.++.+.|++++|...++++.. .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 344466777888899999999999999999865 665 78889999999999999999999999987 5665544333
Q ss_pred H-HHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEc
Q 005317 587 L-RACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVS 665 (702)
Q Consensus 587 ~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (702)
. ..+...++.+.|++.++++++.+|+++..+..++.+|...|++++|+..++++.+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--------------------- 249 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD--------------------- 249 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---------------------
Confidence 3 336688888999999999999999999999999999999999999999999998743
Q ss_pred CCCCCCCh--hHHHHHHHHHHHHhcCCC
Q 005317 666 SDRRHSQG--EDIYRMLDLLASRESDID 691 (702)
Q Consensus 666 ~~~~~p~~--~~~~~~l~~l~~~~~~~~ 691 (702)
|.. ...+..+..+....|+..
T Consensus 250 -----p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 250 -----LTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp -----TTGGGGHHHHHHHHHHHHHCTTC
T ss_pred -----cccccchHHHHHHHHHHHcCCCC
Confidence 444 677888888888888754
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.95 E-value=4e-09 Score=115.76 Aligned_cols=152 Identities=9% Similarity=-0.007 Sum_probs=135.0
Q ss_pred HHcCChHHHHHHHHHch--------hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHH
Q 005317 488 AEHGYSQEAIHLFEKVP--------MVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLL 558 (702)
Q Consensus 488 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 558 (702)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|++.|+++.+. .|+ ...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHHH
Confidence 67899999999999987 32 1334567888899999999999999999999865 564 78899999999
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005317 559 CRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEV 636 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 636 (702)
...|++++|...|+++.. .| +...|..++.++...|++++ ++.|+++++++|++...|..++.+|.+.|++++|+..
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999877 44 67889999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 005317 637 RKMMRSKG 644 (702)
Q Consensus 637 ~~~~~~~~ 644 (702)
++++.+..
T Consensus 557 ~~~al~l~ 564 (681)
T 2pzi_A 557 LDEVPPTS 564 (681)
T ss_dssp HHTSCTTS
T ss_pred HHhhcccC
Confidence 99877644
No 107
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=1.1e-08 Score=99.16 Aligned_cols=206 Identities=8% Similarity=0.004 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhH
Q 005317 376 IISWSTIIGGYSQGGYEEEAFEYLALMRRE------GPRP-NEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMI 448 (702)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 448 (702)
..++..+...|...|++++|+..+++..+. +..| ...++..+...+...|++++|...+..+.+..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 115 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------- 115 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------
Confidence 345566666666666666666666666542 1112 12234444444444444444444444433210
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHchhC------CCCCC-HHHHHH
Q 005317 449 KSALINMYSKCGSIKEASQIFYETESD----DIVSWTAMINGYAEHGYSQEAIHLFEKVPMV------GLRPD-SVTFMG 517 (702)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ 517 (702)
++...+ ...++..+...+...|++++|...++++.+. +-.|+ ..++..
T Consensus 116 ---------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 116 ---------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred ---------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 000001 2345667777777788888888887777653 11232 356778
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhh------CCCCC-hhhHHHHHHHHHhcC------CHHHHHHHHHhCCC-CC-CHHH
Q 005317 518 VLTACSHAGLVDLGFHYFNLMSDKY------GFVPS-KEHYGCMIDLLCRAG------RLSDAENMIENMPH-QK-DDVV 582 (702)
Q Consensus 518 ll~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~-~p-~~~~ 582 (702)
+...+...|++++|.++++++.+.. ...+. ...+..+...+...+ .+.++...++.... .| ...+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8888888999999999888876531 12232 334444444433322 34455555555544 22 3457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005317 583 WSTLLRACMVQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 583 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 609 (702)
+..++..|...|++++|...++++++.
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999999999999999875
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=1.4e-08 Score=93.41 Aligned_cols=127 Identities=7% Similarity=0.015 Sum_probs=98.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHh
Q 005317 482 AMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCR 560 (702)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 560 (702)
.+..+|...|++++|+..|++..+.. +-+...+..+...+...|++++|.+.|+++.+. .|+ ...+..+..+|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 38888999999999999999988753 335678888999999999999999999999854 665 7788888888876
Q ss_pred cCC--HHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005317 561 AGR--LSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 561 ~g~--~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
.|. .+.+...++.... .|....+..++.++...|++++|+..|++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654 4456667776654 233335556677778889999999999999999995
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.94 E-value=7.8e-09 Score=86.07 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=99.3
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHH
Q 005317 508 LRPDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVW 583 (702)
Q Consensus 508 ~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~ 583 (702)
+.|+. ..+......+.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|+..++++.. +.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 45554 46778888899999999999999998854 554 88889999999999999999999999877 4567899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005317 584 STLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIY 624 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 624 (702)
..++.++...|++++|++.|+++++++|++...+..|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999998887653
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.93 E-value=6.6e-09 Score=95.54 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=118.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHchhCCCCCC-HHHHHH----------------HHHHHhccCcHHHHHHHHHHhHHhhCC
Q 005317 482 AMINGYAEHGYSQEAIHLFEKVPMVGLRPD-SVTFMG----------------VLTACSHAGLVDLGFHYFNLMSDKYGF 544 (702)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~g~~~~A~~~~~~~~~~~~~ 544 (702)
.....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|+..|++..+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 83 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--- 83 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 3444556667777777777776653 343 234444 888899999999999999999865
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCchhHHH
Q 005317 545 VPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGD--VNCGRHTAEKILELHPSCAGTHIT 619 (702)
Q Consensus 545 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~ 619 (702)
.|+ ...+..+..+|...|++++|...|+++.. .| +..+|..++..+...|+ .+.+...++++....| ....+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 565 88899999999999999999999999877 44 67889999988876653 4566677777654333 2335677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 620 LANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
++.++...|++++|+..++++.+..
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8999999999999999999998754
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=2.7e-08 Score=91.86 Aligned_cols=129 Identities=9% Similarity=-0.062 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHH
Q 005317 478 VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMID 556 (702)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 556 (702)
..+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|.+.|++..+. .|+ ...+..++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 345556667777788888888777764 456677777777777777788887777777654 343 566777777
Q ss_pred HHHhcCCHHHHHHHHHhCCC-CC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005317 557 LLCRAGRLSDAENMIENMPH-QK-D----------------DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC 613 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~-~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 613 (702)
+|...|++++|...|+++.. .| + ...+..++.++...|++++|.+.++++++..|++
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77777777777777766644 11 1 2566667777777777777777777777777754
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=1.6e-07 Score=91.56 Aligned_cols=161 Identities=8% Similarity=-0.062 Sum_probs=124.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHchhCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHH
Q 005317 482 AMINGYAEHGYSQEAIHLFEKVPMVG-LRPDSV----TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYG 552 (702)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~ 552 (702)
..+..+...|++++|.+++++..+.. ..|+.. .+..+...+...|++++|+..|+.+.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999987632 122221 2334666677888999999999999863111223 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------chhH
Q 005317 553 CMIDLLCRAGRLSDAENMIENMPH--------QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC------AGTH 617 (702)
Q Consensus 553 ~l~~~~~~~g~~~~A~~~~~~~~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 617 (702)
.++.+|...|++++|..+++++.. .+ ...++..++..|...|++++|...+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999988763 11 23478899999999999999999999999876433 6789
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 005317 618 ITLANIYAAKGR-WREAAEVRKMMRS 642 (702)
Q Consensus 618 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 642 (702)
..++.+|.+.|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998865
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=2.7e-08 Score=97.70 Aligned_cols=218 Identities=11% Similarity=0.101 Sum_probs=150.7
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005317 389 GGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQI 468 (702)
Q Consensus 389 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 468 (702)
.|++++|.+++++..+... .. .+...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4566777777776654311 10 011145666666665543 3456677777777777
Q ss_pred HhhCCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHchhC----CCCCC--HHHHHHHHHHHhccCcHHHHHH
Q 005317 469 FYETES-----DD----IVSWTAMINGYAEHGYSQEAIHLFEKVPMV----GLRPD--SVTFMGVLTACSHAGLVDLGFH 533 (702)
Q Consensus 469 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~A~~ 533 (702)
|.+... .+ ..+|+.+..+|...|++++|+..|++..+. | .|. ..++..+...|.. |++++|++
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 765432 11 347788888999999999999999887642 2 222 2467788888888 99999999
Q ss_pred HHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 005317 534 YFNLMSDKYGFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH----QKD----DVVWSTLLRACMVQGDVNCGRH 601 (702)
Q Consensus 534 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~g~~~~A~~ 601 (702)
.|++..+...-..+ ..++..+..+|.+.|++++|+..|+++.. .+. ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988754211111 46788899999999999999999998866 122 2366677778888899999999
Q ss_pred HHHHHHHhCCCCchh-----HHHHHHHHHhcCChHHHHH
Q 005317 602 TAEKILELHPSCAGT-----HITLANIYAAKGRWREAAE 635 (702)
Q Consensus 602 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 635 (702)
.+++++ +.|..... ...++..+ ..|+.+++.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 98876543 34455555 5677766655
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=1.3e-08 Score=100.06 Aligned_cols=197 Identities=9% Similarity=-0.013 Sum_probs=151.5
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005317 423 NMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEK 502 (702)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (702)
..|++++|.+++++..+.... + .+...+++++|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357888999988887764321 1 01115788888887664 46778899999999999988
Q ss_pred chhC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCC--CC--hhhHHHHHHHHHhcCCHHHHHHHHHh
Q 005317 503 VPMV----GLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFV--PS--KEHYGCMIDLLCRAGRLSDAENMIEN 573 (702)
Q Consensus 503 m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (702)
..+. +-.+. ..+|..+...|...|++++|++.|++..+.+.-. |. ..++..+..+|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7642 21111 2478888889999999999999999876542111 11 4677888999988 999999999998
Q ss_pred CCC--C--C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHhcCChHHHHHHHHH
Q 005317 574 MPH--Q--K----DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCA------GTHITLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 574 ~~~--~--p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (702)
... + . ...++..++..+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765 1 1 146788899999999999999999999999876543 3677888899999999999999999
Q ss_pred HH
Q 005317 640 MR 641 (702)
Q Consensus 640 ~~ 641 (702)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=4.2e-08 Score=87.36 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=119.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHH-H
Q 005317 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLLRA-C 590 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~-~ 590 (702)
.+......+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++++.. .|+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 3455667788999999999999998754 565 78889999999999999999999999987 4544433333222 2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCC
Q 005317 591 MVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRH 670 (702)
Q Consensus 591 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (702)
...++...|+..++++++.+|+++..+..++.++...|++++|...++++.+..+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------------------ 140 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG------------------------ 140 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------------------------
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc------------------------
Confidence 23334446899999999999999999999999999999999999999999875431
Q ss_pred CChhHHHHHHHHHHHHhcCCCCC
Q 005317 671 SQGEDIYRMLDLLASRESDIDDL 693 (702)
Q Consensus 671 p~~~~~~~~l~~l~~~~~~~~~~ 693 (702)
+.....+..+..+....|+..++
T Consensus 141 ~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 141 AQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp TTTTHHHHHHHHHHHHHCSSCHH
T ss_pred cChHHHHHHHHHHHHHhCCCCcH
Confidence 12245677788888877776443
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=3.4e-08 Score=106.43 Aligned_cols=150 Identities=11% Similarity=0.013 Sum_probs=94.1
Q ss_pred CChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 005317 491 GYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAEN 569 (702)
Q Consensus 491 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 569 (702)
|++++|++.|++..+.. +.+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+..+|...|++++|..
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 56677777777766532 22355667777777777777777777777763 3554 6667777777777777777777
Q ss_pred HHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhc---CChHHHHHHHHHHHhCC
Q 005317 570 MIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAK---GRWREAAEVRKMMRSKG 644 (702)
Q Consensus 570 ~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 644 (702)
.+++... +.+...+..++..+...|++++|.+.++++++.+|+++..+..++.++... |++++|.+.++++.+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7777655 334567777777777777777777777777777777777777777777777 77777777777765543
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=1e-07 Score=93.02 Aligned_cols=164 Identities=7% Similarity=-0.100 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hh
Q 005317 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD-S----VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KE 549 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 549 (702)
.+...+..+...|++++|.+.+++..+.....+ . ..+..+...+...|++++|.+.+++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566778889999999999988776432211 1 12334555667888999999999988643111112 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------Cc
Q 005317 550 HYGCMIDLLCRAGRLSDAENMIENMPH----QKD-----DVVWSTLLRACMVQGDVNCGRHTAEKILELHPS------CA 614 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 614 (702)
+++.++..|...|++++|...++++.. .|+ ..++..++..|...|++++|+..+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788899999999999999999988763 222 258889999999999999999999999987532 16
Q ss_pred hhHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 005317 615 GTHITLANIYAAKGRWREA-AEVRKMMRS 642 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 642 (702)
.+|..++.+|.+.|++++| ..+++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 777887754
No 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.82 E-value=4.6e-08 Score=81.49 Aligned_cols=119 Identities=15% Similarity=0.050 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
...+..++..+.+.|++++|...|++... +.+...|..++.++...|++++|+..++++++++|+++..+..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34566778888889999999999888776 4467888999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHH
Q 005317 626 AKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASR 686 (702)
Q Consensus 626 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~ 686 (702)
..|++++|...++++.+..+.. ...|...++...+..+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~--------------------~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEV--------------------NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH--------------------HTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCccc--------------------CCchhHHHHHHHHHHHHHh
Confidence 9999999999999987743110 1236777777777776554
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.81 E-value=1.9e-08 Score=85.87 Aligned_cols=101 Identities=13% Similarity=-0.014 Sum_probs=85.3
Q ss_pred CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHH
Q 005317 543 GFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHIT 619 (702)
Q Consensus 543 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 619 (702)
.+.|+ ...+..+...+.+.|++++|...|+++.. +.+...|..++.++...|++++|+..++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 34454 55666777888888999999998888766 4467788888999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 005317 620 LANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
++.+|...|++++|...++++.+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.78 E-value=9.2e-08 Score=84.03 Aligned_cols=126 Identities=11% Similarity=0.057 Sum_probs=102.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 005317 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRAC 590 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~ 590 (702)
.+..+...+...|++++|...|+...+. .| +...+..++.++...|++++|...+++... +.+...|..++..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4556666777788888888888887754 34 477778888888888888888888888766 34677888999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 005317 591 MVQGDVNCGRHTAEKILELHPSCAGTHITLANI--YAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 591 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 642 (702)
...|++++|...++++++.+|.+...+..+..+ +...|++++|...+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999999888555554 8889999999999887654
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=6.4e-06 Score=86.03 Aligned_cols=366 Identities=9% Similarity=-0.003 Sum_probs=201.6
Q ss_pred CC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCC-hHHHH
Q 005317 187 AG-HNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGK-LDYSL 264 (702)
Q Consensus 187 ~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~ 264 (702)
.| +.+.|..+|+.+... -|. ++.+.+..+|+..+.. .|+...|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377777777777653 222 8899999999988885 5688888888877766653 34455
Q ss_pred HHHhccC------CCCcchHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH---ccCchHHHHH
Q 005317 265 RLFERMS------TRDVISWTTIITSYV----QMGEEENAFDAFVRMQESDVKPNEYTFAAIISASA---NLARIQWGEQ 331 (702)
Q Consensus 265 ~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a~~ 331 (702)
.+|+... ..+...|...+.-+. .+++.+.+..+|++.... ++. .+..+-..|. ...+...+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHHH
Confidence 5565432 124566666666543 235677788888888763 221 1122222221 1111222222
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhhHHHHHHHHHcCC--C-----hHHHHHHHH
Q 005317 332 LHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMI----RRDIISWSTIIGGYSQGG--Y-----EEEAFEYLA 400 (702)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~ 400 (702)
+..... +.+..|..+++.+. ..+...|...+.--...+ - .+.+..+|+
T Consensus 145 ~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 145 IVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 222211 11122222222111 112334544444322211 0 345667777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH-HHHHhhCC------
Q 005317 401 LMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEA-SQIFYETE------ 473 (702)
Q Consensus 401 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~------ 473 (702)
++.... +.+...|...+.-+.+.|+.+.|..+++..... +.+...+.. |....+.++. ..+.+...
T Consensus 204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC------
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccch
Confidence 777643 334555666666667778888888888888877 333333322 2221111111 11111110
Q ss_pred ------CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhhCCCC
Q 005317 474 ------SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSH-AGLVDLGFHYFNLMSDKYGFVP 546 (702)
Q Consensus 474 ------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~p 546 (702)
......|...+....+.++.+.|..+|++. .. .+.+...|......-.. .++.+.|..+|+...+.++-
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-- 352 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-- 352 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--
Confidence 001245666666666777888888888888 22 11233344322211112 33688888888888776322
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005317 547 SKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
++..+...++...+.|+.+.|..+|+++.. ....|...+..-...|+.+.+..+++++.+
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 244556667777788888888888888843 567787777777788888888888888875
No 122
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.77 E-value=3.1e-08 Score=88.40 Aligned_cols=120 Identities=10% Similarity=0.075 Sum_probs=96.3
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH-HHhcCCH-
Q 005317 522 CSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRA-CMVQGDV- 596 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~-~~~~g~~- 596 (702)
+...|++++|...++...+. .| +...+..++.+|...|++++|...|+++.. +.+...+..++.. +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 34567888888888887754 34 467888888888889999999998888776 4467788888888 7788888
Q ss_pred -HHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 597 -NCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 597 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
++|+..++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999988754
No 123
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.77 E-value=1.8e-07 Score=87.09 Aligned_cols=184 Identities=11% Similarity=-0.079 Sum_probs=133.4
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CH---HHHHHH
Q 005317 412 FAFASVLSVCGNMAILEQGKQIHAHVMSIGLERT--AMIKSALINMYSKCGSIKEASQIFYETES--D-DI---VSWTAM 483 (702)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~l 483 (702)
..+......+...|++++|...++.+.+...... ...+..+..+|.+.|++++|...|+++.+ | +. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3445566778889999999999999998754322 35677789999999999999999998762 3 22 245556
Q ss_pred HHHHHH------------------cCChHHHHHHHHHchhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCC
Q 005317 484 INGYAE------------------HGYSQEAIHLFEKVPMVGLRPDSV-TFMGVLTACSHAGLVDLGFHYFNLMSDKYGF 544 (702)
Q Consensus 484 i~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 544 (702)
..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~----- 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH-----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH-----
Confidence 666654 57899999999999975 45543 2222111 011111111
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchh
Q 005317 545 VPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDD----VVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGT 616 (702)
Q Consensus 545 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 616 (702)
.....++..|.+.|++++|...|+++.. .|+. ..+..++.++.+.|+.++|++.++.+....|++...
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 1223567889999999999999999876 4442 568889999999999999999999999999977654
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=7.3e-08 Score=95.78 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005317 513 VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----------------KEHYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
..+..+...+...|++++|+..|+++.+. .|+ ...|..+..+|.+.|++++|+..++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555566666666666655533 233 36788899999999999999999998877
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 005317 577 --QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREA-AEVRKMMRS 642 (702)
Q Consensus 577 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 642 (702)
+.+...|..++.++...|++++|+..|+++++++|++...+..++.++...|++++| ...+++|.+
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999999999 456666643
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=2.3e-07 Score=85.54 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=68.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 005317 517 GVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQG 594 (702)
Q Consensus 517 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g 594 (702)
.+...+...|++++|.+.|+++. .|+...+..++.+|.+.|++++|...+++... +.+...|..++..+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34444555556666665555442 34455555555555566666666655555544 234445555555555666
Q ss_pred CHHHHHHHHHHHHHhCCCCc----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 595 DVNCGRHTAEKILELHPSCA----------------GTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 595 ~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
++++|++.++++++..|.+. ..+..++.+|...|++++|...++++.+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 66666666666665555544 555556666666666666666655555543
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.74 E-value=8.3e-08 Score=80.63 Aligned_cols=115 Identities=12% Similarity=0.025 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 005317 512 SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLR 588 (702)
Q Consensus 512 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~ 588 (702)
...+..+...+...|++++|.+.|+++.+ ..| +...+..++.++...|++++|...++++.. +.+...+..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34566666677777777777777777653 344 366677777777777777777777777655 345677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCC
Q 005317 589 ACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGR 629 (702)
Q Consensus 589 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 629 (702)
.+...|++++|...++++++.+|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888999999999999999999888888888888887764
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=1.4e-07 Score=78.80 Aligned_cols=116 Identities=10% Similarity=-0.016 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 005317 512 SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLR 588 (702)
Q Consensus 512 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~ 588 (702)
...+..+...+...|+++.|.+.|+++... .| +...+..++.++...|++++|...+++... +.+...+..++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 346667777778888888888888887754 34 467778888888888899998888888766 345778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCCh
Q 005317 589 ACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRW 630 (702)
Q Consensus 589 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 630 (702)
.+...|++++|...++++++..|+++..+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999988875
No 128
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=7.3e-08 Score=78.06 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CchhHHHHHHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS--CAGTHITLANI 623 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 623 (702)
...+..++..+...|++++|...++++.. +.+...|..++..+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 56677788888889999999998888766 446778889999999999999999999999999999 99999999999
Q ss_pred HHhc-CChHHHHHHHHHHHhCCC
Q 005317 624 YAAK-GRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 624 ~~~~-g~~~~A~~~~~~~~~~~~ 645 (702)
+... |++++|.+.++++.+..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999987654
No 129
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.71 E-value=5.1e-08 Score=80.41 Aligned_cols=96 Identities=13% Similarity=0.004 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh
Q 005317 549 EHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAA 626 (702)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 626 (702)
..+..++..+.+.|++++|...|+++.. +.+...|..++.++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3456677888999999999999999877 44788999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCC
Q 005317 627 KGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 627 ~g~~~~A~~~~~~~~~~~ 644 (702)
.|++++|+..++++.+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999988754
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=2e-07 Score=77.10 Aligned_cols=115 Identities=19% Similarity=0.229 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 005317 512 SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRA 589 (702)
Q Consensus 512 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~ 589 (702)
...+..+...+...|++++|.++++++.+. .+.+...+..++..+.+.|++++|..+++++.. +.+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666777777788888888888877654 122466777788888888888888888887765 3466788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcC
Q 005317 590 CMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKG 628 (702)
Q Consensus 590 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 628 (702)
+...|++++|...++++++.+|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999988888887654
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.71 E-value=1.8e-07 Score=78.49 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
...+..++..+...|++++|...++++.. +.+...+..++..+...|++++|+..++++++.+|.++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 67788899999999999999999999876 3467899999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 005317 626 AKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 626 ~~g~~~~A~~~~~~~~~~ 643 (702)
..|++++|...++++.+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 999999999999998764
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=3e-07 Score=86.37 Aligned_cols=182 Identities=10% Similarity=-0.016 Sum_probs=135.3
Q ss_pred hcCCHHHHHHHHhhCC---CCCHHHHHHH-------HHHHHHcCChHHHHHHHHHchhCCCCCCH---------------
Q 005317 458 KCGSIKEASQIFYETE---SDDIVSWTAM-------INGYAEHGYSQEAIHLFEKVPMVGLRPDS--------------- 512 (702)
Q Consensus 458 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 512 (702)
..++...|.+.|.++. +.....|..+ ..++...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4678888888888766 2355678777 5666666667777666666554 22222
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 005317 513 -------VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDD----V 581 (702)
Q Consensus 513 -------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 581 (702)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233456667889999999999988864 3465336666777889999999999999877664433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 582 VWSTLLRACMVQGDVNCGRHTAEKILELH--PS-CAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
.+..++.++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67788889999999999999999998543 44 45678899999999999999999999998754
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=2.6e-07 Score=77.14 Aligned_cols=117 Identities=10% Similarity=0.059 Sum_probs=103.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
...+..++..+...|++++|...++++.. +.+...+..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 66778889999999999999999999876 4467889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhcCC
Q 005317 626 AKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRESDI 690 (702)
Q Consensus 626 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~ 690 (702)
..|++++|...++++.+. .|.....+..+..+....++.
T Consensus 92 ~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL--------------------------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHHHHhcC
Confidence 999999999999998764 355667778888887777664
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=5.8e-08 Score=93.82 Aligned_cols=191 Identities=13% Similarity=0.003 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHH
Q 005317 446 AMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTAC 522 (702)
Q Consensus 446 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 522 (702)
...+..+...+.+.|++++|...|++.. ..+...|..+..+|...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455667777888888888888888765 3477888899999999999999999999988742 33556888888999
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005317 523 SHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRH 601 (702)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 601 (702)
...|++++|...|+++.+. .|+ ...+...+....+..+...... ......+++......+... ..|++++|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHHH
Confidence 9999999999999988754 332 1112222222222221111111 2222333444444444332 3799999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 005317 602 TAEKILELHPSCAGTHITLANIYAAK-GRWREAAEVRKMMRSK 643 (702)
Q Consensus 602 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 643 (702)
.++++++.+|++......+...+.+. +++++|.++|+++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998888888888888777 7899999999988763
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=3.1e-07 Score=75.91 Aligned_cols=96 Identities=23% Similarity=0.281 Sum_probs=88.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
...+..++..+...|++++|...++++.. +.+..++..++..+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56788889999999999999999999876 4467789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 005317 626 AKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 626 ~~g~~~~A~~~~~~~~~~ 643 (702)
..|++++|..+++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 136
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=7.4e-07 Score=81.91 Aligned_cols=160 Identities=9% Similarity=-0.090 Sum_probs=122.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCHHHHHHHHHHHHHcC----ChHHHHHHHHHchhCCCCCCHHHHHHHH
Q 005317 445 TAMIKSALINMYSKCGSIKEASQIFYETES-DDIVSWTAMINGYAEHG----YSQEAIHLFEKVPMVGLRPDSVTFMGVL 519 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll 519 (702)
++..+..+...|...+++++|...|++..+ .++..+..|...|.. + ++++|+++|++..+.| +...+..|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 344555566667777777777777776553 466677777777776 6 8889999998887654 456677777
Q ss_pred HHHhc----cCcHHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHh----cCCHHHHHHHHHhCCCC-CCHHHHHHHH
Q 005317 520 TACSH----AGLVDLGFHYFNLMSDKYGFVPS---KEHYGCMIDLLCR----AGRLSDAENMIENMPHQ-KDDVVWSTLL 587 (702)
Q Consensus 520 ~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-p~~~~~~~l~ 587 (702)
..|.. .+++++|.++|++..+. .|+ +..+..|..+|.. .+++++|..+|++.... ++...+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77776 78999999999988743 443 6788888888888 78999999999998764 6777888888
Q ss_pred HHHHhc-C-----CHHHHHHHHHHHHHhCC
Q 005317 588 RACMVQ-G-----DVNCGRHTAEKILELHP 611 (702)
Q Consensus 588 ~~~~~~-g-----~~~~A~~~~~~~~~~~p 611 (702)
..|... | +.++|...++++.+.+.
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 887653 3 89999999999998865
No 137
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=2.6e-07 Score=75.48 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
...+..++..+...|++++|...+++... +.+...+..++..+...|++++|...++++++.+|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34556666777777777777777777655 3356677777777778888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 005317 626 AKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 626 ~~g~~~~A~~~~~~~~~~ 643 (702)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 888888888888777653
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.66 E-value=7.6e-08 Score=80.16 Aligned_cols=94 Identities=7% Similarity=-0.029 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch-------hHHH
Q 005317 549 EHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG-------THIT 619 (702)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 619 (702)
..+..++..+.+.|++++|+..|+++.. +.+...|..++.+|...|++++|++.++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4456677888888888888888888766 345678888888888888888888888888888876643 6777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 005317 620 LANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
++.++...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888899999988888765
No 139
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=1.8e-05 Score=76.17 Aligned_cols=227 Identities=11% Similarity=0.035 Sum_probs=136.7
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHcccC--cHHHHHHHHHHHHHhCCCCChhHHHHHHHHH----Hhc--
Q 005317 389 GGYEEEAFEYLALMRREGPRPNEF-AFASVLSVCGNMA--ILEQGKQIHAHVMSIGLERTAMIKSALINMY----SKC-- 459 (702)
Q Consensus 389 ~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 459 (702)
....++|+++++.+.. +.|+.. .++.--..+...+ +++++...++.+.....+ +..+++.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 3344567777776666 344433 3333334444455 666666666666655432 222332222222 233
Q ss_pred -CCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChH--HHHHHHHHchhCCCCCCHHHHHHHHHHHhccCc------
Q 005317 460 -GSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQ--EAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGL------ 527 (702)
Q Consensus 460 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------ 527 (702)
+++++++.+++++. ..+..+|+--.-++.+.|+++ ++++.++++++.. +-|...|+.-...+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 56777777777665 346667766666667777777 7888888877653 3355566555555555554
Q ss_pred HHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHH
Q 005317 528 VDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSD-AENMIENMPH-----QKDDVVWSTLLRACMVQGDVNCGR 600 (702)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~ 600 (702)
++++++.++.+... .|+ ...|+.+..++.+.|+..+ +..+.++... ..+...+..++..+.+.|+.++|+
T Consensus 202 ~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 77777777777654 443 6667777777777776433 4456665543 235667777777777777777788
Q ss_pred HHHHHHHH-hCCCCchhHHHHHH
Q 005317 601 HTAEKILE-LHPSCAGTHITLAN 622 (702)
Q Consensus 601 ~~~~~~~~-~~p~~~~~~~~l~~ 622 (702)
++++.+.+ .+|.....|...+.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHHh
Confidence 88877776 67776666665543
No 140
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=2.7e-06 Score=82.02 Aligned_cols=211 Identities=11% Similarity=0.079 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CCHHHHHHHHHHH----HHc---CChH
Q 005317 427 LEQGKQIHAHVMSIGLERTAMIKSALINMYSKCG--SIKEASQIFYETES---DDIVSWTAMINGY----AEH---GYSQ 494 (702)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~ 494 (702)
.++|....+.++..+.. ....++.-...+...| ++++++..++.+.. .+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 35777778887776533 4556676777777778 99999999998763 4556776655555 555 7899
Q ss_pred HHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCC------HH
Q 005317 495 EAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVD--LGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGR------LS 565 (702)
Q Consensus 495 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~ 565 (702)
+++.+++++.+.. +-|...|+.-...+...|.++ +++++++.+.+. .| |...|+.-..++.+.|. ++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 9999999999753 446778877777777788887 999999999865 44 46677766666767676 89
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhC---CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005317 566 DAENMIENMPH--QKDDVVWSTLLRACMVQGD-VNCGRHTAEKILELH---PSCAGTHITLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 566 ~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (702)
+++++++++.. +.+...|+.+...+.+.|+ .+.+....+++++++ |.++..+..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999988876 4578899999999888887 444667888888776 88999999999999999999999999999
Q ss_pred HHh
Q 005317 640 MRS 642 (702)
Q Consensus 640 ~~~ 642 (702)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.64 E-value=6.4e-08 Score=83.14 Aligned_cols=115 Identities=7% Similarity=-0.070 Sum_probs=93.7
Q ss_pred HHHchhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 005317 500 FEKVPMVGLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH- 576 (702)
Q Consensus 500 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 576 (702)
|+++.. +.|+ ...+..+...+...|++++|...|+.+... .| +...|..+..+|...|++++|+..|+++..
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444443 3453 356777788888999999999999998754 55 477888899999999999999999999876
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHH
Q 005317 577 -QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHIT 619 (702)
Q Consensus 577 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 619 (702)
+.+...+..++.++...|++++|+..|++++++.|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 4467788999999999999999999999999999988776443
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.64 E-value=2e-08 Score=91.49 Aligned_cols=96 Identities=13% Similarity=-0.013 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh
Q 005317 549 EHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAA 626 (702)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 626 (702)
..+..+..+|.+.|++++|+..++++.. +.+...+..++.++...|++++|+..++++++++|+++..+..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5777888889999999999999988876 44677899999999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHhCC
Q 005317 627 KGRWREAA-EVRKMMRSKG 644 (702)
Q Consensus 627 ~g~~~~A~-~~~~~~~~~~ 644 (702)
.|+.+++. ..+..+...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 99888877 5566555443
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=2.6e-07 Score=78.09 Aligned_cols=98 Identities=12% Similarity=0.029 Sum_probs=84.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005317 547 SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIY 624 (702)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 624 (702)
+...+..++..+...|++++|...|++... +.+...|..++..+...|++++|+..++++++.+|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 467778888888888888888888888766 345778888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 005317 625 AAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 625 ~~~g~~~~A~~~~~~~~~~~ 644 (702)
...|++++|...++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999887643
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.62 E-value=2.2e-07 Score=81.49 Aligned_cols=108 Identities=14% Similarity=0.036 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 005317 512 SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLR 588 (702)
Q Consensus 512 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~ 588 (702)
...+..+...+...|++++|++.|++..+. .| +...|..+..+|.+.|++++|+..|+++.. +.+...|..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345666667777777777777777777644 44 366677777777777777777777777665 334667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005317 589 ACMVQGDVNCGRHTAEKILELHPSCAGTHITLAN 622 (702)
Q Consensus 589 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 622 (702)
++...|++++|+..++++++++|++...+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 7777777777777777777777777765555443
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=4e-06 Score=81.52 Aligned_cols=158 Identities=9% Similarity=-0.083 Sum_probs=121.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC---CH------HHHHHHHHHHHHcCChHHHHHHHHHchhCCCC-CC----HHHHHH
Q 005317 452 LINMYSKCGSIKEASQIFYETESD---DI------VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLR-PD----SVTFMG 517 (702)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 517 (702)
.+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999999876531 11 13345666777788999999999998874322 22 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhC----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHH
Q 005317 518 VLTACSHAGLVDLGFHYFNLMSDKYG----FVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-------QK-DDVVWS 584 (702)
Q Consensus 518 ll~~~~~~g~~~~A~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~p-~~~~~~ 584 (702)
+...|...|++++|.++|+++.+... ..+. ..++..++.+|.+.|++++|..++++... .+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999875321 1122 45788899999999999999999988765 11 256889
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHh
Q 005317 585 TLLRACMVQGD-VNCGRHTAEKILEL 609 (702)
Q Consensus 585 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 609 (702)
.++.++...|+ +++|.+.+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999999875
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=1.8e-07 Score=79.73 Aligned_cols=120 Identities=10% Similarity=-0.050 Sum_probs=94.2
Q ss_pred HHHHchhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005317 499 LFEKVPMVGLRPDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 499 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
.|+++.. +.|+. ..+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|...|+++..
T Consensus 6 ~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 6 TLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp ---CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4444443 34433 45666777888899999999999998754 55 477888899999999999999999998876
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005317 577 --QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANI 623 (702)
Q Consensus 577 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 623 (702)
+.+...+..++.++...|++++|+..+++++++.|+++........+
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 44667888999999999999999999999999999888776554433
No 147
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.59 E-value=3.3e-07 Score=78.55 Aligned_cols=104 Identities=6% Similarity=-0.058 Sum_probs=85.8
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHH
Q 005317 508 LRPDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVW 583 (702)
Q Consensus 508 ~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~ 583 (702)
+.|+. ..+..+...+...|++++|...|+.+... .|+ ...|..+..+|...|++++|+..|+++.. +.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 34543 46777778888889999999999988754 565 77888889999999999999999988877 4457788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 005317 584 STLLRACMVQGDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 614 (702)
..++.++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8999999999999999999999999998653
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=6.3e-07 Score=76.79 Aligned_cols=95 Identities=14% Similarity=0.023 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD----DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLAN 622 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 622 (702)
...+..+...+...|++++|...|++... .|+ ...|..+...+...|++++|+..++++++.+|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 44455555555566666666666655544 343 4555666666666666666666666666666666666666666
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 005317 623 IYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~~ 642 (702)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666654
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=1e-06 Score=80.19 Aligned_cols=153 Identities=14% Similarity=-0.013 Sum_probs=90.5
Q ss_pred HcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCCC-hhhHHHHHHHHHhcCCH
Q 005317 489 EHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKY---GFVPS-KEHYGCMIDLLCRAGRL 564 (702)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~ 564 (702)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..+.. +..|. ...+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566666633333211 11223455556666666666666666666554421 11221 44566666677777777
Q ss_pred HHHHHHHHhCCC----CC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CC----chhHHHHHHHHHhcCC
Q 005317 565 SDAENMIENMPH----QK-D----DVVWSTLLRACMVQGDVNCGRHTAEKILELHP--SC----AGTHITLANIYAAKGR 629 (702)
Q Consensus 565 ~~A~~~~~~~~~----~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~ 629 (702)
++|...+++... .+ + ...+..++..+...|++++|...++++++..+ .+ ...+..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 777776666543 12 2 23566777777788888888888888876532 12 2235778888888888
Q ss_pred hHHHHHHHHHHHh
Q 005317 630 WREAAEVRKMMRS 642 (702)
Q Consensus 630 ~~~A~~~~~~~~~ 642 (702)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877765
No 150
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.57 E-value=2.8e-05 Score=81.15 Aligned_cols=348 Identities=8% Similarity=-0.030 Sum_probs=193.2
Q ss_pred hhhHHHHHHccCChHHHHHHhhcCCC--CCcchHHHHHHHHHcCCC-hhHHHHHHHHhhhCCCC-CCCHHHHHHHHHHhh
Q 005317 44 VNSQLKHLVKSGYLHDARKMFDTMTQ--RDEISWTTLISGYVKAMD-SIEALALFSRVWVEPQM-NMDPFILSLALKACA 119 (702)
Q Consensus 44 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~ 119 (702)
|..-+..+-. |+.+.+..+|++... |++..|..-+.-..+.++ .+....+|+.....-|. +++...|...+..+.
T Consensus 18 yer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~ 96 (493)
T 2uy1_A 18 MEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEG 96 (493)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTS
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 3333433332 789999999998765 677788887776666553 45566778877654343 346677888777654
Q ss_pred c----cCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhc-------------CCChhHHHHHhccCC----CCCcchHH
Q 005317 120 L----NVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTK-------------LGKIELGCRVFDEMP----LRNVVSWT 178 (702)
Q Consensus 120 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~~~----~~~~~~~~ 178 (702)
. .++++.+..+|+.++......-...|......-.. .+.+..|..+++.+. ..+...|.
T Consensus 97 ~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~ 176 (493)
T 2uy1_A 97 KIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAA 176 (493)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 2 45677888899988874221111222222111000 011222232222221 11333555
Q ss_pred HHHHHHHhCCC-------hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005317 179 AIITGLVRAGH-------NKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLA 251 (702)
Q Consensus 179 ~li~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 251 (702)
..+.--..++. .+++..+|+++... .+.+...|...+..+...|+.+.|..+++..... +.+...+..
T Consensus 177 ~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~-- 251 (493)
T 2uy1_A 177 RLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY-- 251 (493)
T ss_dssp HHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH--
T ss_pred HHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH--
Confidence 54444322211 34567788888765 3455667777777778888999999999999888 444333332
Q ss_pred HHhhhCCChHHH-HHHHhccC--C-------C---CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005317 252 TMYSKCGKLDYS-LRLFERMS--T-------R---DVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIIS 318 (702)
Q Consensus 252 ~~~~~~g~~~~A-~~~~~~~~--~-------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 318 (702)
|....+.++. ..+.+... + + ....|-..+....+.++.+.|..+|++. ... ..+...|.....
T Consensus 252 --y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~ 327 (493)
T 2uy1_A 252 --YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAF 327 (493)
T ss_dssp --HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHH
T ss_pred --HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHH
Confidence 2221111111 11111110 0 0 1234555666666677788888888877 211 122223322111
Q ss_pred HHH-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHH
Q 005317 319 ASA-NLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFE 397 (702)
Q Consensus 319 ~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 397 (702)
.-. ..++.+.|..+|+...+.- +.+...+...++...+.|+.+.|..+|+.+.. ....|...+..-...|+.+.+.+
T Consensus 328 lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 328 IEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHH
Confidence 111 2236888888888877753 33344555667777777888888888887743 45556666655555677776666
Q ss_pred HHHHHH
Q 005317 398 YLALMR 403 (702)
Q Consensus 398 ~~~~m~ 403 (702)
+++++.
T Consensus 406 v~~~~~ 411 (493)
T 2uy1_A 406 LVDQKM 411 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.55 E-value=5.6e-07 Score=74.76 Aligned_cols=110 Identities=7% Similarity=-0.087 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 005317 513 VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRA 589 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~ 589 (702)
..+..+...+...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|+..++++.. +.+...|..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45666777778888888888888888754 454 77888888888899999999988888776 3457788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHhC------CCCchhHHHHHHHHH
Q 005317 590 CMVQGDVNCGRHTAEKILELH------PSCAGTHITLANIYA 625 (702)
Q Consensus 590 ~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 625 (702)
+...|++++|+..++++++++ |.+...+..+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999 888877777766554
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=4.1e-06 Score=78.73 Aligned_cols=138 Identities=12% Similarity=-0.009 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC--hhhHHHHHH
Q 005317 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS--KEHYGCMID 556 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~ 556 (702)
.+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHH
Confidence 4455677888899999999999888864 465545555666788999999999999866422 1 121 346778899
Q ss_pred HHHhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005317 557 LLCRAGRLSDAENMIENMPHQ---K--DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLA 621 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~---p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 621 (702)
++.+.|++++|+..|++.... | ....+.....++.+.|+.++|...|++++..+|+ +..+..|.
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999999988653 4 3347788888999999999999999999999997 66555553
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=4.7e-07 Score=80.59 Aligned_cols=127 Identities=9% Similarity=0.067 Sum_probs=102.0
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHH-HHhcCCH-
Q 005317 488 AEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDL-LCRAGRL- 564 (702)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 564 (702)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888988888887653 446678888899999999999999999998765 44 46778888888 7789998
Q ss_pred -HHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHH
Q 005317 565 -SDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHI 618 (702)
Q Consensus 565 -~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 618 (702)
++|...++++.. .| +...+..++..+...|++++|...++++++.+|++.....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 999999998876 34 5778889999999999999999999999999998866543
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.2e-06 Score=74.98 Aligned_cols=114 Identities=11% Similarity=-0.021 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHH
Q 005317 511 DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH-Q-KDDVVWS 584 (702)
Q Consensus 511 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~ 584 (702)
+...+..+...+...|++++|.+.|++.. ...|+ ...+..+..+|...|++++|...+++... . .+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 44566777777788888888888888776 34565 56777788888888999999888888766 3 4577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhc
Q 005317 585 TLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAK 627 (702)
Q Consensus 585 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 627 (702)
.++.++...|++++|...++++++.+|++...+..+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999988888877765443
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.53 E-value=3.8e-07 Score=77.15 Aligned_cols=63 Identities=19% Similarity=0.066 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCCchhH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 581 VVWSTLLRACMVQGDVNCGRHTAEKILEL-------HPSCAGTH----ITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
..|..+..++...|++++|+..+++++++ +|++...| +..+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 48999999999999999999999999999 99999999 99999999999999999999999874
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.53 E-value=1e-07 Score=86.70 Aligned_cols=116 Identities=13% Similarity=-0.010 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005317 549 EHYGCMIDLLCRAGRLSDAENMIENMPH-QK-D----------------DVVWSTLLRACMVQGDVNCGRHTAEKILELH 610 (702)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 610 (702)
..+..+...+.+.|++++|...|+++.. .| + ...|..++.++...|++++|+..++++++.+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3444555566666666666666665543 11 1 2688889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhcCC
Q 005317 611 PSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRESDI 690 (702)
Q Consensus 611 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~ 690 (702)
|+++..+..++.+|...|++++|+..++++.+. +|....++..+..+....++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------------------------NPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------------------------CCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998763 366677777777777666554
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.53 E-value=7.2e-07 Score=78.16 Aligned_cols=98 Identities=11% Similarity=0.017 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
...+..+...+.+.|++++|+..|++... +.+...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56677778888888888888888888766 3467788888888888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 005317 626 AKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 626 ~~g~~~~A~~~~~~~~~~~~ 645 (702)
..|++++|+..++++.+..+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHS
T ss_pred HccCHHHHHHHHHHHHHhCC
Confidence 88888888888888776443
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.52 E-value=1e-06 Score=73.49 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---chhHHHHHHH
Q 005317 552 GCMIDLLCRAGRLSDAENMIENMPH-QKDD----VVWSTLLRACMVQGDVNCGRHTAEKILELHPSC---AGTHITLANI 623 (702)
Q Consensus 552 ~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 623 (702)
..++..+...|++++|...|+++.. .|+. ..+..++.++...|++++|+..++++++.+|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3455666677777777777776655 3332 366677777778888888888888888888877 6667888888
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 005317 624 YAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~~~ 643 (702)
|...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877663
No 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=4.5e-06 Score=81.16 Aligned_cols=161 Identities=8% Similarity=-0.073 Sum_probs=120.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CCH------HHHHHHHHHHHHcCChHHHHHHHHHchhCCC---CCC--HHHH
Q 005317 450 SALINMYSKCGSIKEASQIFYETES---DDI------VSWTAMINGYAEHGYSQEAIHLFEKVPMVGL---RPD--SVTF 515 (702)
Q Consensus 450 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~ 515 (702)
...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3456677888999999888875431 111 2344566667788999999999988775321 222 3478
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-------CHHH
Q 005317 516 MGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-----KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-------DDVV 582 (702)
Q Consensus 516 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-------~~~~ 582 (702)
+.+...|...|++++|..+|+++.+.....|+ ..++..++.+|.+.|++++|..++++... .+ ...+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88999999999999999999998733222233 25788999999999999999999988765 11 1568
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHHHhC
Q 005317 583 WSTLLRACMVQGDVNCG-RHTAEKILELH 610 (702)
Q Consensus 583 ~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 610 (702)
+..++..+...|++++| ...+++++++.
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 88999999999999999 88899988753
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=1.4e-06 Score=70.93 Aligned_cols=109 Identities=12% Similarity=0.001 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 005317 513 VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRA 589 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~ 589 (702)
..+..+...+...|++++|...|+..... .| +...+..++.++...|++++|...+++... +.+...+..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45566667777788888888888877654 34 466777788888888888888888887765 3457788888999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005317 590 CMVQGDVNCGRHTAEKILELHPSCAGTHITLANIY 624 (702)
Q Consensus 590 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 624 (702)
+...|++++|...++++++.+|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999988888877654
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.48 E-value=8.5e-07 Score=77.52 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCE
Q 005317 580 DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQ 659 (702)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (702)
...|..++.++...|++++|+..++++++++|.++..|..++.+|...|++++|...++++.+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------------- 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------
Confidence 4578888888999999999999999999999999999999999999999999999999988763
Q ss_pred EEEEEcCCCCCCChh-HHHHHHHHHHHHhcCC
Q 005317 660 VSAFVSSDRRHSQGE-DIYRMLDLLASRESDI 690 (702)
Q Consensus 660 ~~~~~~~~~~~p~~~-~~~~~l~~l~~~~~~~ 690 (702)
+|.+. .+...+..+.......
T Consensus 127 ----------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 ----------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp ----------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHH
Confidence 35665 6677777776655543
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=1.2e-06 Score=79.80 Aligned_cols=153 Identities=12% Similarity=0.028 Sum_probs=107.4
Q ss_pred hcCCHHHHHH---HHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchh----CCCCC-CHHHHHHHHHHHhccCcHH
Q 005317 458 KCGSIKEASQ---IFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPM----VGLRP-DSVTFMGVLTACSHAGLVD 529 (702)
Q Consensus 458 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~ 529 (702)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++..+ .+..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777 55443333456777778888888888888888877664 22222 2346777788888899999
Q ss_pred HHHHHHHHhHHhhCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCCH
Q 005317 530 LGFHYFNLMSDKYGFVP-S----KEHYGCMIDLLCRAGRLSDAENMIENMPH----QKD----DVVWSTLLRACMVQGDV 596 (702)
Q Consensus 530 ~A~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~g~~ 596 (702)
+|.+.+++..+...-.+ + ...+..+...+...|++++|...+++... .++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 99998888765422122 1 34577788889999999999998887654 122 23457788889999999
Q ss_pred HHHHHHHHHHHHhC
Q 005317 597 NCGRHTAEKILELH 610 (702)
Q Consensus 597 ~~A~~~~~~~~~~~ 610 (702)
++|.+.+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 163
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.45 E-value=1.1e-06 Score=87.26 Aligned_cols=116 Identities=9% Similarity=-0.037 Sum_probs=99.1
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----------------HHHHHHH
Q 005317 525 AGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD----------------DVVWSTL 586 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----------------~~~~~~l 586 (702)
.+++++|.+.|+...+. .|+ ...+..+...|.+.|++++|...|+++.. .|+ ..+|..+
T Consensus 126 L~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 34555566655554432 343 67788899999999999999999999877 444 4799999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 587 LRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
+.++...|++++|+..++++++++|+++..+..++.+|...|++++|+..++++.+.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999874
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.43 E-value=1.4e-06 Score=73.44 Aligned_cols=113 Identities=6% Similarity=-0.115 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 005317 510 PDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTL 586 (702)
Q Consensus 510 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l 586 (702)
.+...+..+...+...|++++|...|+..... .|+ ...+..++.++...|++++|...++++.. +.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 35567777888888888888888888888754 444 77788888888889999999988888766 4457788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHH
Q 005317 587 LRACMVQGDVNCGRHTAEKILELHPS-----CAGTHITLANIYA 625 (702)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 625 (702)
+..+...|++++|+..+++++++.|+ +......+..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 5555555554443
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=1.8e-06 Score=71.64 Aligned_cols=102 Identities=11% Similarity=0.015 Sum_probs=63.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----C----HHHH
Q 005317 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK----D----DVVW 583 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p----~----~~~~ 583 (702)
.+..+...+.+.|++++|++.|+++.+. .|+ ...|..+..+|.+.|++++|+..+++... .| . ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3444555555666666666666655532 343 55555666666666666666666655543 11 1 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHH
Q 005317 584 STLLRACMVQGDVNCGRHTAEKILELHPSCAGTHIT 619 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 619 (702)
..++.++...|++++|++.|+++++..| ++.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHH
Confidence 6778888888999999999999988887 4544433
No 166
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.38 E-value=5.1e-06 Score=72.61 Aligned_cols=128 Identities=9% Similarity=-0.016 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHH
Q 005317 478 VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMID 556 (702)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 556 (702)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+. .| +...+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 456677788888889999999888887642 345677888888888899999999999988754 34 4777888888
Q ss_pred HHHhcCCHHHHHHHHHhCCC-CC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHh
Q 005317 557 LLCRAGRLSDAENMIENMPH-QK-DDVVWST--LLRACMVQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 609 (702)
++...|++++|...++++.. .| +...+.. ++..+...|++++|...+++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999988766 33 4445533 333477888999999888877654
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.36 E-value=1.3e-06 Score=72.87 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------chhHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC-------AGTHI 618 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 618 (702)
...+..++..+...|++++|...++++.. +.+...+..++..+...|++++|...++++++..|.+ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34566777888888888888888887765 3467788888999999999999999999999998776 78899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 619 TLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
.++.+|...|++++|...++++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998774
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.36 E-value=2.7e-06 Score=88.40 Aligned_cols=95 Identities=9% Similarity=0.078 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
...|..+..+|.+.|++++|+..++++.. +.+...|..++.+|...|++++|+..|+++++++|++...+..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46788889999999999999999998877 4567899999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHHh
Q 005317 626 AKGRWREAAE-VRKMMRS 642 (702)
Q Consensus 626 ~~g~~~~A~~-~~~~~~~ 642 (702)
+.|++++|.. .+++|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998864 4666654
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.35 E-value=8.1e-07 Score=92.71 Aligned_cols=117 Identities=11% Similarity=0.059 Sum_probs=98.5
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 005317 519 LTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGD 595 (702)
Q Consensus 519 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~ 595 (702)
...+...|++++|.+.|+++.+. .|+ ...|..+..+|.+.|++++|+..++++.. +.+..+|..++.++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34566788999999999988765 555 78888999999999999999999988876 4467789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHH--HHhcCChHHHHHHHH
Q 005317 596 VNCGRHTAEKILELHPSCAGTHITLANI--YAAKGRWREAAEVRK 638 (702)
Q Consensus 596 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 638 (702)
+++|++.++++++++|++...+..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999988 889999999999988
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=6e-07 Score=73.44 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHH
Q 005317 561 AGRLSDAENMIENMPHQ----K-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635 (702)
Q Consensus 561 ~g~~~~A~~~~~~~~~~----p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 635 (702)
.|++++|+..|+++... | +...+..++..+...|++++|+..++++++.+|+++..+..++.+|...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46667777777766552 3 245677778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhC
Q 005317 636 VRKMMRSK 643 (702)
Q Consensus 636 ~~~~~~~~ 643 (702)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877653
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.32 E-value=4.1e-06 Score=72.76 Aligned_cols=129 Identities=12% Similarity=0.002 Sum_probs=83.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHH
Q 005317 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH----QK----DDV 581 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p----~~~ 581 (702)
++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|...+++... .+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554432110111 13555666666677777777766666543 11 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 582 VWSTLLRACMVQGDVNCGRHTAEKILELHP------SCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.+..++..+...|++++|.+.++++++..+ .....+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667778888888899999888888887632 1245788899999999999999999988765
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.31 E-value=9.4e-06 Score=67.43 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=81.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-h---hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 005317 517 GVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-K---EHYGCMIDLLCRAGRLSDAENMIENMPH-QKD----DVVWSTLL 587 (702)
Q Consensus 517 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~l~ 587 (702)
.+...+...|++++|...|+.+.+. .|+ . ..+..++.++.+.|++++|...|+++.. .|+ ...+..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 4455667788888888888888754 344 2 4677788888888899888888888766 343 56788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 588 RACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 588 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
.++...|++++|...++++++..|+++........+-.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 99999999999999999999999988776655544433
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.30 E-value=3.6e-06 Score=84.50 Aligned_cols=137 Identities=9% Similarity=-0.044 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHH
Q 005317 478 VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMID 556 (702)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 556 (702)
..+..+...+.+.|++++|+..|++..+. .++.. .... .+... ...|. ...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 44666666677777777777777665531 01000 0000 11111 12333 677888999
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHH
Q 005317 557 LLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAA 634 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 634 (702)
+|.+.|++++|+..++++.. +.+...|..++.++...|++++|+..++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877 3467899999999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 005317 635 EV 636 (702)
Q Consensus 635 ~~ 636 (702)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=2.6e-06 Score=69.98 Aligned_cols=98 Identities=12% Similarity=0.017 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHH
Q 005317 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRAC 590 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~ 590 (702)
.+..+...+.+.|++++|+..|+++.+. .|+ ...|..+..++...|++++|+..|+++.. .| +...+..++.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666778889999999999988854 564 77888889999999999999999988877 44 577888899999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCc
Q 005317 591 MVQGDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 591 ~~~g~~~~A~~~~~~~~~~~p~~~ 614 (702)
...|++++|+..++++++.+|++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCC
Confidence 999999999999999999988654
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.28 E-value=1.7e-06 Score=75.51 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc-hhHHHHHHHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCA-GTHITLANIY 624 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 624 (702)
...|..+..+|.+.|++++|+..++++.. +.+...|..++.++...|++++|...++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56788889999999999999999998877 44678999999999999999999999999999999988 5565665554
Q ss_pred Hh
Q 005317 625 AA 626 (702)
Q Consensus 625 ~~ 626 (702)
..
T Consensus 143 ~~ 144 (162)
T 3rkv_A 143 ER 144 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.28 E-value=1.1e-06 Score=87.30 Aligned_cols=148 Identities=13% Similarity=0.014 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 005317 477 IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMID 556 (702)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 556 (702)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345666666777777777777777776653 344331 223333443332221 136777888
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH-HhcCChHHH
Q 005317 557 LLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIY-AAKGRWREA 633 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 633 (702)
+|.+.|++++|+..++++.. +.+...|..++.+|...|++++|+..|+++++++|+++..+..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888766 345678888888888888888888888888888888888888888774 445667777
Q ss_pred HHHHHHHHhCC
Q 005317 634 AEVRKMMRSKG 644 (702)
Q Consensus 634 ~~~~~~~~~~~ 644 (702)
...+++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 77887776543
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.28 E-value=3.2e-06 Score=81.45 Aligned_cols=112 Identities=4% Similarity=-0.178 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 005317 511 DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLL 587 (702)
Q Consensus 511 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~ 587 (702)
+...+..+...+...|++++|+..|+.+.+. .| +...|..+..+|.+.|++++|...++++.. +.+...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567778888899999999999999998865 56 478888899999999999999999999877 34677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 588 RACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 588 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
.++...|++++|+..++++++++|+++..+...++...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 99999999999999999999999877655554444444
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=5.4e-06 Score=68.93 Aligned_cols=111 Identities=6% Similarity=-0.014 Sum_probs=75.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-C-------HHHHH
Q 005317 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-D-------DVVWS 584 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~-------~~~~~ 584 (702)
.+..+...+...|++++|...|+.+... .+.+...+..++.++...|++++|...++++.. .| + ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455555566666666666666666543 122355566666666677777777776666554 11 1 56778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhc
Q 005317 585 TLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAK 627 (702)
Q Consensus 585 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 627 (702)
.++..+...|++++|...++++++..| ++.....+..+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 888889999999999999999999988 677777776665443
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.25 E-value=0.00053 Score=66.71 Aligned_cols=231 Identities=11% Similarity=0.071 Sum_probs=126.4
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHcccC-cHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-C
Q 005317 384 GGYSQGGYEEEAFEYLALMRREGPRPNEF-AFASVLSVCGNMA-ILEQGKQIHAHVMSIGLERTAMIKSALINMYSKC-G 460 (702)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 460 (702)
....+.+..++|+++++++... .|+.. .++.--..+...| .++++..+++.+..... .+..+++.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcC
Confidence 3344455666788888877763 44433 3343333444445 46777777766665443 2444444444444444 4
Q ss_pred -CHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChH--------HHHHHHHHchhCCCCCCHHHHHHHHHHHhccCc-
Q 005317 461 -SIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQ--------EAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGL- 527 (702)
Q Consensus 461 -~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~- 527 (702)
++++++++++++.+ .|..+|+--.-++.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 66777777777664 34556655555555555555 7777777777643 3355566666555555554
Q ss_pred ------HHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCH--------------------HHHHHHHHhCCC-C--
Q 005317 528 ------VDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRL--------------------SDAENMIENMPH-Q-- 577 (702)
Q Consensus 528 ------~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~-~-- 577 (702)
++++++.++++... .|+ ...|+.+-..+.+.|+. .+..++..++.. .
T Consensus 218 ~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 56777777766643 454 55565555555555543 333344444433 1
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCchhHHHHH
Q 005317 578 -----KDDVVWSTLLRACMVQGDVNCGRHTAEKIL-ELHPSCAGTHITLA 621 (702)
Q Consensus 578 -----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~ 621 (702)
++...+..|+..|...|+.++|.++++.+. +.+|-....|...+
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 345556666666666666666666666665 34555444444433
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=9.8e-06 Score=83.83 Aligned_cols=164 Identities=8% Similarity=-0.112 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCCC-hh
Q 005317 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVG-LRPDS----VTFMGVLTACSHAGLVDLGFHYFNLMSDKY---GFVPS-KE 549 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~ 549 (702)
++..++..|...|++++|.+.+.++...- -.++. .+.+.+...+...|+++.|.++++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46678888999999999999888876421 11222 123334444566789999999988775431 22233 56
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCC----c
Q 005317 550 HYGCMIDLLCRAGRLSDAENMIENMPH-------QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELH---PSC----A 614 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~----~ 614 (702)
++..++..|...|++++|..+++++.. ++ ...++..++..|...|++++|...+++++... +.. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 778899999999999999999887643 12 24578888999999999999999999998764 222 3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 615 GTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4667788888999999999998877754
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=5.6e-06 Score=66.60 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CC--CHHHHHHH
Q 005317 512 SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QK--DDVVWSTL 586 (702)
Q Consensus 512 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p--~~~~~~~l 586 (702)
...+..+...+...|++++|...|+++.+. .| +...+..+..++...|++++|...++++.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 345666777778888888888888887754 34 466777888888888888888888888765 33 57788888
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhCCCCc
Q 005317 587 LRACMVQ-GDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 587 ~~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 614 (702)
+..+... |++++|.+.++++++..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8889999 999999999999999888654
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.22 E-value=1.3e-06 Score=71.49 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=70.1
Q ss_pred cCcHHHHHHHHHHhHHhhCC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHH
Q 005317 525 AGLVDLGFHYFNLMSDKYGF-VPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGR 600 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 600 (702)
.|++++|+..|++..+. +. .|+ ...+..+..+|...|++++|...|+++.. +.+...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 56777788888877632 10 243 66777888888888899999888888776 345778888899999999999999
Q ss_pred HHHHHHHHhCCCCchhHH
Q 005317 601 HTAEKILELHPSCAGTHI 618 (702)
Q Consensus 601 ~~~~~~~~~~p~~~~~~~ 618 (702)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999998876544
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.22 E-value=7e-06 Score=85.21 Aligned_cols=65 Identities=8% Similarity=-0.026 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 580 DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
...|..+..++.+.|++++|+..++++++++|+++..|..++.+|...|++++|+..|+++.+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46888999999999999999999999999999999999999999999999999999999998753
No 184
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=2e-05 Score=63.27 Aligned_cols=99 Identities=11% Similarity=-0.019 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECC
Q 005317 579 DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKD 658 (702)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (702)
+...|..++..+...|++++|++.++++++.+|+++..+..++.+|...|++++|+..++++.+..+....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------- 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH--------- 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS---------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH---------
Confidence 45567777888888888888888888888888888888888888888888888888888887764321000
Q ss_pred EEEEEEcCCCCCCChhHHHHHHHHHHHHhcCCCCCCccc
Q 005317 659 QVSAFVSSDRRHSQGEDIYRMLDLLASRESDIDDLDSLV 697 (702)
Q Consensus 659 ~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 697 (702)
.......+..++.+....+....+...+
T Consensus 74 -----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 74 -----------VAIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred -----------HHHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 0001556666777777777665444433
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.20 E-value=0.00013 Score=70.95 Aligned_cols=211 Identities=12% Similarity=0.043 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCC---CCCHHHHHHHHHHHHHc-C-ChHHHHHHH
Q 005317 427 LEQGKQIHAHVMSIGLERTAMIKSALINMYSKCG-SIKEASQIFYETE---SDDIVSWTAMINGYAEH-G-YSQEAIHLF 500 (702)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~ 500 (702)
.++|.++.+.++..+.. +..+++.--..+...| .+++++..++.+. ..+..+|+.-..++... + +++++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 35677777777776533 4455666666677777 5999999999876 34677888877777776 7 899999999
Q ss_pred HHchhCCCCCCHHHHHHHHHHHhccCcHH--------HHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCC-------H
Q 005317 501 EKVPMVGLRPDSVTFMGVLTACSHAGLVD--------LGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGR-------L 564 (702)
Q Consensus 501 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~ 564 (702)
+++.+.. +-|...|+.-...+.+.|.++ ++++.++++.+. .| |...|+....++.+.++ +
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHH
Confidence 9999753 446667766555555555555 899999999865 44 57778888888877776 6
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHhC------CCCchh
Q 005317 565 SDAENMIENMPH--QKDDVVWSTLLRACMVQGDV--------------------NCGRHTAEKILELH------PSCAGT 616 (702)
Q Consensus 565 ~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~~ 616 (702)
++++++++++.. +.+...|+-+...+.+.|+. ....+....++... +.++..
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 889999988776 44677888877777766653 23333333333322 456778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 617 HITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
+..|+.+|...|+.++|.++++.+.+
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 88999999999999999999999864
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.3e-07 Score=72.83 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=79.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------chhHH
Q 005317 547 SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC------AGTHI 618 (702)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 618 (702)
+...+..+...+.+.|++++|...|++... +.+...|..++.++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 355677788888999999999999988876 4467889999999999999999999999999999998 78888
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 005317 619 TLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~ 639 (702)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 899999988888877665544
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.16 E-value=1e-05 Score=63.69 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 578 KDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 578 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
.+...|..++..+...|++++|+..++++++.+|+++..|..++.+|...|++++|+..+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467788999999999999999999999999999999999999999999999999999999998764
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.15 E-value=2.5e-06 Score=72.00 Aligned_cols=83 Identities=11% Similarity=0.030 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcC-
Q 005317 562 GRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGD----------VNCGRHTAEKILELHPSCAGTHITLANIYAAKG- 628 (702)
Q Consensus 562 g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 628 (702)
+.+++|.+.++.... +.+...|..++.++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 334444444444433 2234444444444444433 679999999999999999999999999999875
Q ss_pred ----------ChHHHHHHHHHHHhCC
Q 005317 629 ----------RWREAAEVRKMMRSKG 644 (702)
Q Consensus 629 ----------~~~~A~~~~~~~~~~~ 644 (702)
++++|++.|+++.+..
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8999999999998754
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.14 E-value=9.7e-06 Score=81.32 Aligned_cols=86 Identities=12% Similarity=0.009 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECC
Q 005317 579 DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKD 658 (702)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (702)
+...|..+..++.+.|++++|+..++++++++|+++..+..++.+|...|++++|+..++++.+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------------- 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------- 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 45688899999999999999999999999999999999999999999999999999999998864
Q ss_pred EEEEEEcCCCCCCChhHHHHHHHHHHHHhcCC
Q 005317 659 QVSAFVSSDRRHSQGEDIYRMLDLLASRESDI 690 (702)
Q Consensus 659 ~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~ 690 (702)
.|....+...+..+....++.
T Consensus 337 -----------~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 337 -----------APEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHH
Confidence 356667777777766655543
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=8.4e-05 Score=78.87 Aligned_cols=168 Identities=5% Similarity=-0.084 Sum_probs=135.9
Q ss_pred CHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccC-
Q 005317 461 SIKEASQIFYETE---SDDIVSWTAMINGYAEHGY----------SQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAG- 526 (702)
Q Consensus 461 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g- 526 (702)
.-++|++.++++. ..+..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3456677777665 3355677777777777776 899999999998753 446678887777788888
Q ss_pred -cHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcC-CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc--------
Q 005317 527 -LVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAG-RLSDAENMIENMPH--QKDDVVWSTLLRACMVQ-------- 593 (702)
Q Consensus 527 -~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~-------- 593 (702)
+++++++.++++.+. .| +...|+.-..++.+.| .+++++++++++.. ..+..+|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999865 45 4777887788888888 89999999999988 34678888888877653
Q ss_pred ------CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHH
Q 005317 594 ------GDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWRE 632 (702)
Q Consensus 594 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 632 (702)
+.++++.+.++++++.+|++..+|..+.+++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998665
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.13 E-value=3.9e-06 Score=83.31 Aligned_cols=116 Identities=5% Similarity=-0.054 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005317 513 VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMV 592 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 592 (702)
..+..+...+...|++++|...|+++... .|+... +...|+.+++...+. ...|..+..++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 45666677777888888888888877643 343221 223344444443332 2378889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005317 593 QGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 593 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
.|++++|+..++++++++|++...|..++.+|...|++++|+..++++.+..+
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999876543
No 192
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.13 E-value=0.00044 Score=66.96 Aligned_cols=177 Identities=8% Similarity=0.009 Sum_probs=102.9
Q ss_pred HHHHHHHhhCC---CCCHHHHHHHHHHHHHcCC--hHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHH
Q 005317 463 KEASQIFYETE---SDDIVSWTAMINGYAEHGY--SQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGL-VDLGFHYFN 536 (702)
Q Consensus 463 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~ 536 (702)
++++.+++.+. +.+..+|+--..++...++ +++++.+++++.+.. +-|...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444433 2355555555555555553 566777776666542 3344555554444555555 466677776
Q ss_pred HhHHhhCCCC-ChhhHHHHHHHHHhc--------------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc------
Q 005317 537 LMSDKYGFVP-SKEHYGCMIDLLCRA--------------GRLSDAENMIENMPH--QKDDVVWSTLLRACMVQ------ 593 (702)
Q Consensus 537 ~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~------ 593 (702)
.+.+. .| |...|+....++.+. +.+++++++++.+.. +.+..+|+-+-..+...
T Consensus 170 ~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 170 SLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 66654 33 355555444444433 346667777766655 33555665554444433
Q ss_pred -----CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH---hcCChHHHHHHHHHHHhC
Q 005317 594 -----GDVNCGRHTAEKILELHPSCAGTHITLANIYA---AKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 594 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~ 643 (702)
+.++++++.+++++++.|++..++..++.... ..|..++....+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45788888888888888888665555544322 357777888888887763
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.12 E-value=6.5e-06 Score=66.88 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=65.3
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 566 DAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 566 ~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
+|+..|+++.. +.+...+..++..+...|++++|+..++++++.+|+++..+..++.+|...|++++|...++++.+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35556666544 3457788888889999999999999999999999999999999999999999999999999988764
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.11 E-value=5.3e-06 Score=70.16 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchh
Q 005317 550 HYGCMIDLLCRAGRLSDAENMIENMPH--------QK-DDVVW----STLLRACMVQGDVNCGRHTAEKILELHPSCAGT 616 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 616 (702)
.|..+..++.+.|++++|+..+++... .| +...| ...+.++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 566666677777777776666655432 44 45688 899999999999999999999999999998876
Q ss_pred HHHHH
Q 005317 617 HITLA 621 (702)
Q Consensus 617 ~~~l~ 621 (702)
+.-+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 65443
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.09 E-value=1.5e-05 Score=61.22 Aligned_cols=81 Identities=22% Similarity=0.282 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
...+..+...+...|++++|...+++... +.+...+..++..+...|++++|...++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45666777778888888888888877765 3456778888888889999999999999999999988888888888887
Q ss_pred hcC
Q 005317 626 AKG 628 (702)
Q Consensus 626 ~~g 628 (702)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.06 E-value=7e-06 Score=84.90 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=93.1
Q ss_pred HhccCcHHHHHHHHHHhHHhhC--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHHH
Q 005317 522 CSHAGLVDLGFHYFNLMSDKYG--FVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH---------QKD-DVVWST 585 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~p~-~~~~~~ 585 (702)
+...|++++|..++++..+... +.|+ ..+++.|+.+|...|++++|..++++... .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456777777777666554321 2222 45677788888888888888887777654 233 457888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-----CCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 005317 586 LLRACMVQGDVNCGRHTAEKILEL-----HPSCAG---THITLANIYAAKGRWREAAEVRKMMRSKGVIKEP 649 (702)
Q Consensus 586 l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 649 (702)
|+..|...|++++|+.++++++++ +|+++. ....|..++.++|++++|..++.+++++..+..+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999874 677765 4567888899999999999999999875543333
No 197
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=1.1e-05 Score=84.06 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCC
Q 005317 552 GCMIDLLCRAGRLSDAENMIENMPH-Q-KDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGR 629 (702)
Q Consensus 552 ~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 629 (702)
..+...+.+.|++++|.+.++++.. . .+..+|..++.++...|++++|++.++++++++|+++..+..++.+|...|+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3445567789999999999999877 4 4588999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhC
Q 005317 630 WREAAEVRKMMRSK 643 (702)
Q Consensus 630 ~~~A~~~~~~~~~~ 643 (702)
+++|++.++++.+.
T Consensus 90 ~~eA~~~~~~al~~ 103 (477)
T 1wao_1 90 FRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999874
No 198
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.05 E-value=0.0015 Score=63.23 Aligned_cols=193 Identities=7% Similarity=-0.035 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCC-hHHHHHHH
Q 005317 427 LEQGKQIHAHVMSIGLERTAMIKSALINMYSKCG--SIKEASQIFYETE---SDDIVSWTAMINGYAEHGY-SQEAIHLF 500 (702)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 500 (702)
++.+..+++.+....+ .+..+++.-...+.+.+ .+++++.+++.+. ..|..+|+--.-++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4556666666665442 34555555555555555 4778888887766 3566777777777777787 58899999
Q ss_pred HHchhCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhc----
Q 005317 501 EKVPMVGLRPDSVTFMGVLTACSHA--------------GLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRA---- 561 (702)
Q Consensus 501 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---- 561 (702)
+++++.. +-|...|+.....+... +.++++++.+..+... .|+ ...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 8888753 34556666554444333 5678899999888754 565 66666555555444
Q ss_pred -------CCHHHHHHHHHhCCC-CCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005317 562 -------GRLSDAENMIENMPH-QKDDVVWSTLLRAC-----MVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 562 -------g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
+.++++++.++++.+ .|+. .|..+..+. ...|..++....+.++.+++|...+-|..+...+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 457888888888877 5654 444332222 24678889999999999999988888887765543
No 199
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=1.5e-05 Score=69.09 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hh
Q 005317 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGL-RPDS----VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KE 549 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 549 (702)
++..+...+...|++++|+..+++..+..- .++. .++..+...+...|++++|.+.+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455566666677777777777766553210 0111 35666777777888888888888776543211111 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005317 550 HYGCMIDLLCRAGRLSDAENMIENMPH----QK----DDVVWSTLLRACMVQGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 611 (702)
.+..+...+...|++++|...+++... .+ ....+..+...+...|++++|.+.+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 567778888888888888888877654 11 234677788888999999999999999887653
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.02 E-value=5.5e-05 Score=63.59 Aligned_cols=112 Identities=8% Similarity=-0.097 Sum_probs=83.3
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 005317 526 GLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMV----QGDVNCGRH 601 (702)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 601 (702)
+++++|.++|++..+. + .|+ .. |...|...+..++|.++|++.....+...+..|...|.. .+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4567777777777654 3 222 22 666777777777777777777666677777778777776 778888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 005317 602 TAEKILELHPSCAGTHITLANIYAA----KGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 602 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 645 (702)
.++++.+. .++..+..|+.+|.. .+++++|.+++++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888776 467788888888888 7888888888888877664
No 201
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=5.4e-05 Score=78.18 Aligned_cols=158 Identities=9% Similarity=0.000 Sum_probs=119.0
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh
Q 005317 485 NGYAEHGYSQEAIHLFEKVPMVGLRPD----------------SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSK 548 (702)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 548 (702)
..+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+++..+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 456677888888888888776421111 1236778899999999999999999887653333332
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------
Q 005317 549 ----EHYGCMIDLLCRAGRLSDAENMIENMPH-------QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELH------ 610 (702)
Q Consensus 549 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 610 (702)
.+.+.+...+...|++++|..+++.... .+ ...++..++..+...|++++|...++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2344455566678999999998877643 22 24577889999999999999999999998752
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 611 PSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 611 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
|.....+..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33356889999999999999999999998765
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.01 E-value=5.3e-05 Score=58.09 Aligned_cols=65 Identities=29% Similarity=0.345 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 579 DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
+...+..+...+...|++++|+..++++++.+|+++..+..++.++...|++++|...++++.+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678889999999999999999999999999999999999999999999999999999998764
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.92 E-value=6.9e-05 Score=57.52 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005317 577 QKDDVVWSTLLRACMVQGD---VNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 577 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
++++..+..+..++...++ .++|...++++++.+|+++.....++..+.+.|++++|+.+|+++.+..+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788888888765554 79999999999999999999999999999999999999999999998654
No 204
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.92 E-value=1.4e-05 Score=78.55 Aligned_cols=238 Identities=11% Similarity=0.071 Sum_probs=174.0
Q ss_pred CchhhhhHHHHHHccCChHHHHHHhhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhh
Q 005317 40 STPEVNSQLKHLVKSGYLHDARKMFDTMTQRDEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACA 119 (702)
Q Consensus 40 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 119 (702)
...+|+.|.++..+.|++.+|+..| ++..|+..|..++.+..+.|.+++-+.+++-.++. .-++..=+.|+-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 3567999999999999999999887 44557788999999999999999999999877644 445556678888999
Q ss_pred ccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCC------------------------CCCcc
Q 005317 120 LNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMP------------------------LRNVV 175 (702)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~ 175 (702)
+.+++.+.+.++. .|+..-...+.+-|...|.++.|.-+|..++ ..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9998877655433 3555455555666666677777777766653 24788
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 005317 176 SWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYS 255 (702)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 255 (702)
+|-.+-.+|...+.+.-|.-.--.++- .| .....++..|-..|.+++...+++...... .....+|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 999999999999999888765444432 22 234456777888999999988888776322 456778888888888
Q ss_pred hCCChHHHHHHHhccCC----C-------CcchHHHHHHHHHhcCChhHHHH
Q 005317 256 KCGKLDYSLRLFERMST----R-------DVISWTTIITSYVQMGEEENAFD 296 (702)
Q Consensus 256 ~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~~ 296 (702)
+- +.++..+-++..-. | ....|.-++-.|++-.++|.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 76 45555554443321 2 45678888888888888887653
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.83 E-value=2.8e-05 Score=65.60 Aligned_cols=91 Identities=9% Similarity=-0.026 Sum_probs=60.8
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCH----------HHHHHHHHhCCC-CC-CHHHHHHHHHHH
Q 005317 524 HAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRL----------SDAENMIENMPH-QK-DDVVWSTLLRAC 590 (702)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~-~p-~~~~~~~l~~~~ 590 (702)
+.+.+++|++.++...+. .|+ ...|..+..++...|++ ++|+..|+++.. .| ...+|..++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 344556666666666543 443 55666666666655543 477777777666 33 456777777777
Q ss_pred Hhc-----------CCHHHHHHHHHHHHHhCCCCchhH
Q 005317 591 MVQ-----------GDVNCGRHTAEKILELHPSCAGTH 617 (702)
Q Consensus 591 ~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~ 617 (702)
... |++++|++.|+++++++|++....
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 665 589999999999999999875443
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.83 E-value=0.00017 Score=76.62 Aligned_cols=157 Identities=8% Similarity=0.030 Sum_probs=127.1
Q ss_pred cCChHHHHHHHHHchhCCCCCCH-HHHHHHHHHHhccCc----------HHHHHHHHHHhHHhhCCCCC-hhhHHHHHHH
Q 005317 490 HGYSQEAIHLFEKVPMVGLRPDS-VTFMGVLTACSHAGL----------VDLGFHYFNLMSDKYGFVPS-KEHYGCMIDL 557 (702)
Q Consensus 490 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 557 (702)
....++|++.++++... .|+. ..|+.--.++...|+ ++++++.++.+.+. .|. ..+|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 34456889999999974 5654 556655555555666 89999999999865 554 7778877888
Q ss_pred HHhcC--CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhc-----
Q 005317 558 LCRAG--RLSDAENMIENMPH--QKDDVVWSTLLRACMVQG-DVNCGRHTAEKILELHPSCAGTHITLANIYAAK----- 627 (702)
Q Consensus 558 ~~~~g--~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 627 (702)
+.+.| ++++++++++++.+ +.+..+|+.-..++...| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88889 77999999999988 457889999999999999 899999999999999999999999999998874
Q ss_pred ---------CChHHHHHHHHHHHhCCCccCCee
Q 005317 628 ---------GRWREAAEVRKMMRSKGVIKEPGW 651 (702)
Q Consensus 628 ---------g~~~~A~~~~~~~~~~~~~~~~~~ 651 (702)
+++++|+++++++....+....+|
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW 229 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 229 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 567999999998887554444433
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=1.5e-05 Score=82.42 Aligned_cols=117 Identities=9% Similarity=-0.075 Sum_probs=91.1
Q ss_pred HHHhcCCHHHHHHHHHhCCC---------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCc---hhHH
Q 005317 557 LLCRAGRLSDAENMIENMPH---------QKD-DVVWSTLLRACMVQGDVNCGRHTAEKILEL-----HPSCA---GTHI 618 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~---------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~~ 618 (702)
.+...|++++|+.++++... .|+ ..+++.|+.+|...|++++|+.+++++++. +|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999998877644 232 458899999999999999999999999874 45554 5788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhcCCC
Q 005317 619 TLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRESDID 691 (702)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~ 691 (702)
.|+.+|..+|++++|+.+++++.+..- ... | ..||...++...+.+...+.+...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~l----------------G-~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VTH----------------G-PSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT----------------C-TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HHh----------------C-CCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876211 000 1 368999999888888876665543
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.69 E-value=0.00013 Score=58.89 Aligned_cols=80 Identities=15% Similarity=-0.002 Sum_probs=60.6
Q ss_pred HHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005317 530 LGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKI 606 (702)
Q Consensus 530 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 606 (702)
.|++.|+++.+ ..|+ ...+..++.+|...|++++|...|++... +.+...|..++.++...|++++|...++++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35566666653 3454 66777788888888888888888887766 345678888888888889999999999998
Q ss_pred HHhCCC
Q 005317 607 LELHPS 612 (702)
Q Consensus 607 ~~~~p~ 612 (702)
+++.|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 888764
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.59 E-value=0.00072 Score=56.62 Aligned_cols=112 Identities=13% Similarity=-0.009 Sum_probs=95.9
Q ss_pred CChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHH
Q 005317 491 GYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCR----AGRLSD 566 (702)
Q Consensus 491 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 566 (702)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999887 44444 667777888899999999998765 367788889999988 899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC
Q 005317 567 AENMIENMPHQKDDVVWSTLLRACMV----QGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 567 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 611 (702)
|..+|++..+..++..+..|...|.. .++.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999887888999999999998 8999999999999999864
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.59 E-value=0.00013 Score=74.21 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=83.6
Q ss_pred HHHHhcCCHHHHHHHHHhCCC------CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCc---hhH
Q 005317 556 DLLCRAGRLSDAENMIENMPH------QK----DDVVWSTLLRACMVQGDVNCGRHTAEKILEL-----HPSCA---GTH 617 (702)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~------~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~ 617 (702)
..+.+.|++++|+.++++... .| -..+++.|+.+|...|++++|+.+++++++. +|+++ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 345566777888777766543 12 1347788888899999999999999988874 45554 578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhc
Q 005317 618 ITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRES 688 (702)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 688 (702)
..|+.+|..+|++++|+.+++++.+.-- ... | ..||...+++..+.....++.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~l----------------G-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTH----------------G-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT----------------C-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hhc----------------C-CCChHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999998876211 111 1 268888888888888766543
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.55 E-value=0.00057 Score=53.22 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=30.9
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhH
Q 005317 555 IDLLCRAGRLSDAENMIENMPH-QK-DDV-VWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTH 617 (702)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~~~-~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 617 (702)
+..+.+.|++++|...++++.. .| +.. .|..++.++...|++++|+..++++++++|+++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3344455555555555554443 22 333 444555555555555555555555555555544443
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.55 E-value=0.00011 Score=57.36 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCch-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005317 587 LRACMVQGDVNCGRHTAEKILELHPSCAG-THITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
+..+...|++++|+..++++++.+|+++. .+..++.+|...|++++|+..++++.+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44455666666666666666666666666 66666666666666666666666665543
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.39 E-value=0.00035 Score=54.69 Aligned_cols=64 Identities=9% Similarity=-0.060 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 611 (702)
...+..+..+|...|++++|+..|+++.. +.+...|..++.+|...|++++|++.+++++++.|
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 66677778888888888888888887766 33566788888888888888888888888888765
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.39 E-value=0.00017 Score=73.33 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHhCCC---------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCC---chhHHHHHH
Q 005317 561 AGRLSDAENMIENMPH---------QKD-DVVWSTLLRACMVQGDVNCGRHTAEKILEL-----HPSC---AGTHITLAN 622 (702)
Q Consensus 561 ~g~~~~A~~~~~~~~~---------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~ 622 (702)
.|++++|+.++++... .|+ ..+++.|+.+|...|++++|+.+++++++. +|++ ...+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566777766665433 122 357788888999999999999999998874 4555 457889999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 005317 623 IYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~~ 642 (702)
+|..+|++++|+.+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998876
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.36 E-value=0.015 Score=46.20 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=104.4
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHH
Q 005317 487 YAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSD 566 (702)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 566 (702)
+.-.|..++..++..+... +.+..-||.++--....-+.+-..++++.+-+-+.+.+ .|+...
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 4456888889999888875 33555677777666677778888888888754433322 333444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005317 567 AENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVI 646 (702)
Q Consensus 567 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 646 (702)
....+-.+. .+....+..+.....+|+.++-..++..++...|.+++....++.+|.+.|+..+|.+++.++.+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444433332 244556667788889999999999999987777779999999999999999999999999999999975
Q ss_pred c
Q 005317 647 K 647 (702)
Q Consensus 647 ~ 647 (702)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.36 E-value=0.003 Score=61.38 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005317 577 QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 577 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
+.++.++..+...+...|++++|...++++++++| +...|..+++++.-.|++++|.+.++++....+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 45667777777777777888888888888888886 566777888888888888888888888776543
No 217
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.27 E-value=9.3e-05 Score=72.95 Aligned_cols=237 Identities=13% Similarity=0.103 Sum_probs=165.2
Q ss_pred chhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 005317 142 SVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASAD 221 (702)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 221 (702)
.+.+|+.|..+..+.+.+.+|++.|-+. .|+..|..+|.+..+.|.+++-+..+...++. .-++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHh
Confidence 4567778888888888888887766543 46667888888888888888888877665543 3344455678888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC------------------------CCcch
Q 005317 222 SGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMST------------------------RDVIS 277 (702)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 277 (702)
.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 887766554442 46665566677777777777777777766541 47889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCC-CCchHHHHHHHHHHH
Q 005317 278 WTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGL-VDSLSVANSIMAMYS 356 (702)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 356 (702)
|-.+-.+|...+++..|.-.--.+.- .|| ....++..|-..|.+++-..+++... |+ .....+|+.|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 99999999999999877655444432 222 23345666788888888888877665 33 356778888888887
Q ss_pred hcCCHHHHHHHHhcCCC----C-------ChhhHHHHHHHHHcCCChHHHHH
Q 005317 357 KCGQLTSTSIVFHGMIR----R-------DIISWSTIIGGYSQGGYEEEAFE 397 (702)
Q Consensus 357 ~~g~~~~a~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~~ 397 (702)
+- ++++..+.++..-. | ....|.-++-.|.+-.+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 75 55666665554422 1 45578888888888888887654
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.15 E-value=0.015 Score=56.48 Aligned_cols=141 Identities=10% Similarity=-0.031 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHH--HcC---ChHHHHHHHHHchhCCCCCCH-HHHHHHHHHHhc---cC-----cHHHHHHHHHHhHH
Q 005317 475 DDIVSWTAMINGYA--EHG---YSQEAIHLFEKVPMVGLRPDS-VTFMGVLTACSH---AG-----LVDLGFHYFNLMSD 540 (702)
Q Consensus 475 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~g-----~~~~A~~~~~~~~~ 540 (702)
.+...|...+.+.. ..+ ...+|+.+|++.++. .|+. ..+..+..++.. .+ ......+.+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35555665555432 222 346788888888874 5653 344443333321 01 11111112222111
Q ss_pred hhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHH
Q 005317 541 KYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHI 618 (702)
Q Consensus 541 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 618 (702)
....+.+..+|..+...+...|++++|...++++.. .|+...|..++..+.-.|+.++|.+.+++++.++|..+ +|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 101234588888888888888999999999999888 78888888889999999999999999999999999554 443
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.12 E-value=0.0017 Score=65.88 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=63.6
Q ss_pred cCcHHHHHHHHHHhHHhh--CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHHHHHH
Q 005317 525 AGLVDLGFHYFNLMSDKY--GFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH---------QKD-DVVWSTLLR 588 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~p~-~~~~~~l~~ 588 (702)
.|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++.. .|+ ..+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 355666666666554321 12222 45667777777777777777777776544 233 347888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHh-----CCCCchhHH
Q 005317 589 ACMVQGDVNCGRHTAEKILEL-----HPSCAGTHI 618 (702)
Q Consensus 589 ~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~ 618 (702)
.|..+|++++|+.++++++++ +|+++.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999874 687776554
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.10 E-value=0.0019 Score=53.81 Aligned_cols=86 Identities=13% Similarity=-0.033 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHhCCC-C-C--CHHHHHHHHHHHHhcCCHHHHH
Q 005317 528 VDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAG---RLSDAENMIENMPH-Q-K--DDVVWSTLLRACMVQGDVNCGR 600 (702)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~-p--~~~~~~~l~~~~~~~g~~~~A~ 600 (702)
...+.+-|.+..+. + .++..+...+..++++.+ +.++++.+|++... . | ....+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44444445444332 2 244555555555555555 34455555555444 2 3 2334444555555555555555
Q ss_pred HHHHHHHHhCCCCch
Q 005317 601 HTAEKILELHPSCAG 615 (702)
Q Consensus 601 ~~~~~~~~~~p~~~~ 615 (702)
+.++.+++.+|+|..
T Consensus 92 ~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHCTTCHH
T ss_pred HHHHHHHhcCCCCHH
Confidence 555555555554443
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.03 E-value=0.0023 Score=59.39 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=68.3
Q ss_pred HHHHHHHHHhCCC-CCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhc-CChHH
Q 005317 564 LSDAENMIENMPH-QKD---DVVWSTLLRACMV-----QGDVNCGRHTAEKILELHPSC-AGTHITLANIYAAK-GRWRE 632 (702)
Q Consensus 564 ~~~A~~~~~~~~~-~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 632 (702)
..+|...++++.+ .|+ ...|..++..|.. -|+.++|++.|+++++++|+. ..++..+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3456666666655 555 4577777777777 489999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCe
Q 005317 633 AAEVRKMMRSKGVIKEPG 650 (702)
Q Consensus 633 A~~~~~~~~~~~~~~~~~ 650 (702)
|.+++++.....+...|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876654343
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.01 E-value=0.0035 Score=63.69 Aligned_cols=99 Identities=8% Similarity=-0.060 Sum_probs=68.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhh--CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHH
Q 005317 521 ACSHAGLVDLGFHYFNLMSDKY--GFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH---------QKD-DVVWS 584 (702)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~p~-~~~~~ 584 (702)
.+...|++++|.+++++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++.. .|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777776665431 12222 45667777778888888888877776644 233 34778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCchhHHH
Q 005317 585 TLLRACMVQGDVNCGRHTAEKILEL-----HPSCAGTHIT 619 (702)
Q Consensus 585 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~ 619 (702)
.|+..|...|++++|+.++++++++ +|+++.+-..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8899999999999999999999874 6887765544
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.97 E-value=0.0031 Score=49.55 Aligned_cols=75 Identities=20% Similarity=0.147 Sum_probs=57.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhH
Q 005317 547 SKEHYGCMIDLLCRAGRLSDAENMIENMPH---------QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTH 617 (702)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 617 (702)
+...+..|+..+.+.|+++.|...|+.+.. .+....+..|+.++.+.|+++.|...+++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 344455667777777777777777766544 13466888999999999999999999999999999998876
Q ss_pred HHHH
Q 005317 618 ITLA 621 (702)
Q Consensus 618 ~~l~ 621 (702)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6664
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.75 E-value=0.0071 Score=50.31 Aligned_cols=65 Identities=11% Similarity=-0.050 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 578 KDDVVWSTLLRACMVQG---DVNCGRHTAEKILELH-P-SCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 578 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
++..+...+..++.+++ +.++++.+++.+++.+ | ++...++.|+-.|.+.|++++|.++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45555555556665555 4446666666666655 4 3455666666666666666666666665554
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.62 E-value=0.01 Score=45.28 Aligned_cols=67 Identities=7% Similarity=0.048 Sum_probs=53.7
Q ss_pred CChhhHHHHHHHHHhcCC---HHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005317 546 PSKEHYGCMIDLLCRAGR---LSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 546 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
.++..+..+..++...++ .++|..++++... +.+...+..++..+...|++++|+..|+++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456777777777765554 6888888888877 445678888888899999999999999999999987
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.58 E-value=0.45 Score=50.33 Aligned_cols=115 Identities=9% Similarity=0.025 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHchhCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 005317 491 GYSQEAIHLFEKVPMVG-LRPDSV--TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDA 567 (702)
Q Consensus 491 g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 567 (702)
.+.+.|...+....... +.+... ....+.......+...++...+...... .++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 36777877777765432 222221 2222333334444344555555554322 23333344444445567888888
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005317 568 ENMIENMPHQK--DDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 568 ~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
...|+.|...+ .....-=+..+....|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888877632 222223345566677888888888887764
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.34 E-value=0.036 Score=43.28 Aligned_cols=65 Identities=12% Similarity=-0.043 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 579 DDVVWSTLLRACMVQGDVNCGRHTAEKILELH-------PSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
+..-...++..+...|++..|..-++++++.. +..+.++..|+.+|.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34456678999999999999999999999863 345678999999999999999999999999863
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.04 E-value=0.46 Score=53.06 Aligned_cols=166 Identities=15% Similarity=0.112 Sum_probs=95.9
Q ss_pred HHHhcCChhHHHH-HHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 005317 284 SYVQMGEEENAFD-AFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLT 362 (702)
Q Consensus 284 ~~~~~g~~~~a~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 362 (702)
.....+++++|.+ ++..+ |+...+..++..+.+.|..+.|.++.+.- ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 3345677777665 43111 11122255566666677777766554211 11133456788899
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCC
Q 005317 363 STSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGL 442 (702)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 442 (702)
.|.++.+.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...++-+.....|-
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 8888887763 457888899999999999999999887743 23333344445666655554444443331
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005317 443 ERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEK 502 (702)
Q Consensus 443 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (702)
++.-..+|.+.|++++|.++ |.+.+++++|..+-+.
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~------------------~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDL------------------LIKSQRFSEAAFLGST 774 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHH------------------HHHTTCHHHHHHHHHH
T ss_pred ------hHHHHHHHHHcCCHHHHHHH------------------HHHcCChHHHHHHHHH
Confidence 22233445556666666554 3445566666665554
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.00 E-value=0.1 Score=41.58 Aligned_cols=92 Identities=13% Similarity=-0.060 Sum_probs=68.1
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHHH
Q 005317 526 GLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSD---AENMIENMPHQ--K--DDVVWSTLLRACMVQGDVNC 598 (702)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~ 598 (702)
.....+.+-|...... | .|+..+-..+..++.+..+..+ ++.++++.... | .....-.|.-++.+.|+++.
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555556655443 3 3677777778888888887666 88888887763 3 34466678888999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHH
Q 005317 599 GRHTAEKILELHPSCAGTHIT 619 (702)
Q Consensus 599 A~~~~~~~~~~~p~~~~~~~~ 619 (702)
|.+.++.+++.+|+|..+...
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999988765544
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.91 E-value=0.067 Score=59.94 Aligned_cols=27 Identities=11% Similarity=0.034 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHh
Q 005317 512 SVTFMGVLTACSHAGLVDLGFHYFNLM 538 (702)
Q Consensus 512 ~~~~~~ll~~~~~~g~~~~A~~~~~~~ 538 (702)
...|..+...+.+.++++.|.+.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444444455555555554444443
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.77 E-value=0.044 Score=43.75 Aligned_cols=80 Identities=10% Similarity=-0.072 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhC-C-CCchhHHHHHHHHHhcCChHHHHHH
Q 005317 564 LSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNC---GRHTAEKILELH-P-SCAGTHITLANIYAAKGRWREAAEV 636 (702)
Q Consensus 564 ~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 636 (702)
...+.+-|.+... .++..+--.+.+++.++++... ++.+++.++..+ | ......+.|+-.+.+.|+|++|.++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444444322 5788888889999998886655 999999999887 5 5678999999999999999999999
Q ss_pred HHHHHhC
Q 005317 637 RKMMRSK 643 (702)
Q Consensus 637 ~~~~~~~ 643 (702)
++.+.+.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999873
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.088 Score=56.73 Aligned_cols=124 Identities=16% Similarity=0.151 Sum_probs=84.2
Q ss_pred HHHHHHHHhccCc-HHHHHHHHHHhHHhhCCCCChhhHH--HHHHHHHhcCC-HHHHHHHHHhCCC---------CC-C-
Q 005317 515 FMGVLTACSHAGL-VDLGFHYFNLMSDKYGFVPSKEHYG--CMIDLLCRAGR-LSDAENMIENMPH---------QK-D- 579 (702)
Q Consensus 515 ~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~-~~~A~~~~~~~~~---------~p-~- 579 (702)
...++..+...++ ++.|..+|+++..+ .|....+. .++..+...++ --+|.+++.+..+ ++ +
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 3455555655655 68899999988765 55433332 23333333332 2245544443321 11 1
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005317 580 ---------DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 580 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
......-...|...|+++.|+++.++++..-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11233334557789999999999999999999999999999999999999999999998874
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.61 E-value=0.034 Score=45.42 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005317 594 GDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 594 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
+|.++|.++|+.++.++..-+..|...+.--.++|+...|.+++.+....++
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 4555555555555555444445555555555555555555555555555443
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.52 E-value=0.016 Score=53.79 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHh-cCC
Q 005317 528 VDLGFHYFNLMSDKYGFVPS---KEHYGCMIDLLCRA-----GRLSDAENMIENMPH-QK--DDVVWSTLLRACMV-QGD 595 (702)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~p--~~~~~~~l~~~~~~-~g~ 595 (702)
...|...+++.. .+.|+ ...|..|+..|.+. |+.++|.+.|++... .| +..++......++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 456666666665 44776 55788888888884 899999999999887 56 36777778887777 489
Q ss_pred HHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005317 596 VNCGRHTAEKILELHPSC-AGTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 596 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
.+++.+.+++++...|.. +. +.+...++-++|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhH
Confidence 999999999999988753 33 12233344566766666543
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.02 E-value=0.17 Score=41.38 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=44.1
Q ss_pred cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005317 561 AGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLA 621 (702)
Q Consensus 561 ~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 621 (702)
.++.++|.++|+.+.. +.-...|.....--.++|+...|..++.+++.+.|.....+...+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 3566666666666643 334667777777778999999999999999999986655544433
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.84 E-value=0.68 Score=37.58 Aligned_cols=65 Identities=11% Similarity=-0.071 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 578 KDDVVWSTLLRACMVQGD---VNCGRHTAEKILELHPS-CAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 578 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
|+..+--.+.+++.++.+ ..+++.+++.++..+|. .....+.|+-.+.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444443332 23444444444444442 334444445555555555555555554444
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.75 E-value=0.2 Score=40.10 Aligned_cols=66 Identities=11% Similarity=-0.070 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 577 QKDDVVWSTLLRACMVQGD---VNCGRHTAEKILELHPS-CAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 577 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.|+..+--.+.+++.++.+ ..+++.+++.++..+|. ....++.|+-.+.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555555554443 34566666666666653 355666666666666666666666666654
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.63 E-value=1.2 Score=37.98 Aligned_cols=103 Identities=14% Similarity=0.108 Sum_probs=57.4
Q ss_pred HhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHH
Q 005317 253 MYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQL 332 (702)
Q Consensus 253 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 332 (702)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|...|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344566666666666555 3455677777777777777777777666542 23333344445555555544
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 005317 333 HAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMI 372 (702)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 372 (702)
-+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 444433331 2333444555677777666665543
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.52 E-value=7.1 Score=43.08 Aligned_cols=264 Identities=13% Similarity=0.024 Sum_probs=114.9
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHhcCCC-CC----------hhhHHHHHHHH
Q 005317 320 SANLARIQWGEQLHAHVLRLGLVDS--LSVANSIMAMYSKCGQLTSTSIVFHGMIR-RD----------IISWSTIIGGY 386 (702)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~----------~~~~~~li~~~ 386 (702)
....|+.+++..++......+-..+ ...-..+.-+....|.-+++...+..... .+ +..-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456666666665554433110111 22223334444455554555555544321 11 11122333333
Q ss_pred HcCCC-hHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHH--HhcCC
Q 005317 387 SQGGY-EEEAFEYLALMRREGPRPNEFAFA--SVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMY--SKCGS 461 (702)
Q Consensus 387 ~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~ 461 (702)
+-.|. -+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. +..+...+..++ .-.|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33332 2345555555544221 1111111 22233445566666666666655421 222333333333 34556
Q ss_pred HHHHHHHHhhCC-CCCHHH-HH---HHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 005317 462 IKEASQIFYETE-SDDIVS-WT---AMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFN 536 (702)
Q Consensus 462 ~~~A~~~~~~~~-~~~~~~-~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 536 (702)
.+.+..+.+.+. ..++.. |. ++..+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 555555555443 123222 22 23445666677666555776666431 1122222222223333455445555555
Q ss_pred HhHHhhCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005317 537 LMSDKYGFVPSKEHYGCMIDLLCRAGRL-SDAENMIENMPHQKDDVVWSTLLRAC 590 (702)
Q Consensus 537 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~ 590 (702)
.+.+. ..|.+..-..+.-+....|.. .+|.+.+..+...++..+-...+.++
T Consensus 619 ~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 619 LLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp TGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 44332 234333333333333334433 56677777776666655554444443
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.52 E-value=3.2 Score=35.41 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=49.8
Q ss_pred HHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005317 456 YSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYF 535 (702)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 535 (702)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.--|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666655544 3455666666666666666666666655442 122333334445554444333
Q ss_pred HHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005317 536 NLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMP 575 (702)
Q Consensus 536 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 575 (702)
+....+ | -++.-...+.-.|+++++.++|.+..
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 333221 1 12333334444556666555555543
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.34 E-value=0.26 Score=41.27 Aligned_cols=121 Identities=14% Similarity=0.056 Sum_probs=60.4
Q ss_pred CCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005317 506 VGLRPDSV--TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSK-------EHYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 506 ~g~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+++++...|++..|...|+++..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555432 34444556666777777776666654432223331 2444556666677777776666665422
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005317 577 -------QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 577 -------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
.++. ...+.. .... ..-.. .+.+.+.-+.++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~--~~~~~~----~ss~-------p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTGN----SAST-------PQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCc--cccccc----cCCC-------ccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1111 000000 0000 00000 1223467788999999999999999999865
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.89 E-value=6.7 Score=37.40 Aligned_cols=171 Identities=11% Similarity=0.020 Sum_probs=99.0
Q ss_pred CchhhhhHHHHHHccCChHHHHHHhhcCCCCCcchHHHHHHHHHcCCChhHHHHHH----HHhhhCCCCCCCHHHHHHHH
Q 005317 40 STPEVNSQLKHLVKSGYLHDARKMFDTMTQRDEISWTTLISGYVKAMDSIEALALF----SRVWVEPQMNMDPFILSLAL 115 (702)
Q Consensus 40 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~ll 115 (702)
....|..+...|.+++++++|++++ |. -...+.+.|....|-++- +...+. ++++|......++
T Consensus 34 AHQ~~RTi~~Ry~~~k~y~eAidLL----------~~-GA~~ll~~~Q~~sg~DL~~llvevy~~~-~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 34 AAQETRLVAARYSKQGNWAAAVDIL----------AS-VSQTLLRSGQGGSGGDLAVLLVDTFRQA-GQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH----------HH-HHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHH----------HH-HHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 3456788888888888888888886 22 233456667776655433 333333 7788888877777
Q ss_pred HHhhccCCch-h----hhHHHHHHHHhc--CCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCC
Q 005317 116 KACALNVNVN-Y----GESLHGYTVKTG--FVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAG 188 (702)
Q Consensus 116 ~~~~~~~~~~-~----a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 188 (702)
..+.....-+ . ..+...+-.+.| ..-|+.....+...|.+.+++.+|+.-|=.-..++...+..++--+...+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 7776554311 1 222333333444 34467777888888888899999988874322223355544444443333
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005317 189 HNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLK 237 (702)
Q Consensus 189 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 237 (702)
...++--++.+ .++ .|.-.+++..|..+++...+
T Consensus 182 ~~~e~dlfiaR--------------aVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ESHTAPLYCAR--------------AVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CGGGHHHHHHH--------------HHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHH--------------HHH-HHHHhCCHHHHHHHHHHHHH
Confidence 32222211111 222 23445778888877766654
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.51 E-value=12 Score=35.43 Aligned_cols=166 Identities=7% Similarity=0.064 Sum_probs=95.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHcccC
Q 005317 350 SIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEY----LALMRREGPRPNEFAFASVLSVCGNMA 425 (702)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~ 425 (702)
++..-|.+.+++++|++++.. -...+.+.|+...|-++ ++-..+.+.+++......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 344457777888888777533 33445566776666554 444455678888888888887765533
Q ss_pred cHH-HHHHHHHHHH----HhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHc---CChHH
Q 005317 426 ILE-QGKQIHAHVM----SIGL--ERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEH---GYSQE 495 (702)
Q Consensus 426 ~~~-~a~~~~~~~~----~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~ 495 (702)
..+ .-.++...++ +.|. .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |...+
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 211 1122333333 3332 236777888888999999999998887633322455554444433333 32222
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005317 496 AIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDK 541 (702)
Q Consensus 496 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 541 (702)
+-- ..-..++ .|.-.|+...|..+|+...++
T Consensus 187 ~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 187 VAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 211 1111222 244567888888888877654
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.32 E-value=0.83 Score=45.48 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCccCCe
Q 005317 582 VWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS-----KGVIKEPG 650 (702)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 650 (702)
+...++..+...|++++++..++.++..+|-+-..|..|+.+|.+.|+..+|++.|+.+.+ .|+.|.+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 4455677788999999999999999999999999999999999999999999999988755 47777654
No 245
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.29 E-value=6.1 Score=31.71 Aligned_cols=141 Identities=9% Similarity=0.014 Sum_probs=86.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH
Q 005317 285 YVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTST 364 (702)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 364 (702)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+-..+++ .+.|-..|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vL---d~IGkiFDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVL---DKIGSYFDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHH---HHHGGGSCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHH---HHHhhhcCc----------HhhhcHHHH
Confidence 34457777777777776653 24445555555444433333333333 333322221 234455555
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCC
Q 005317 365 SIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLE 443 (702)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 443 (702)
...+-.+.. +....+.-+..+..+|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 554444322 233455667778888999998888888644 35777888888889999999999999888888877753
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.27 E-value=12 Score=35.29 Aligned_cols=166 Identities=10% Similarity=0.086 Sum_probs=95.1
Q ss_pred HHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHHHc
Q 005317 247 ANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDA----FVRMQESDVKPNEYTFAAIISASAN 322 (702)
Q Consensus 247 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 322 (702)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44555567778888888877533 23445566776655553 4555566788888777777776655
Q ss_pred cCchH-HHHHHHHHHHH----hCC--CCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcC---CCh
Q 005317 323 LARIQ-WGEQLHAHVLR----LGL--VDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQG---GYE 392 (702)
Q Consensus 323 ~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 392 (702)
...-+ .-.++.+.+.+ .|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 22344444443 222 236778888899999999999988877533222444554444433333 333
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHH
Q 005317 393 EEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVM 438 (702)
Q Consensus 393 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 438 (702)
.++ +...-..++ .+...++...|..+++...
T Consensus 185 ~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 322 111122222 3445677777777766554
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.94 E-value=2.5 Score=34.33 Aligned_cols=74 Identities=7% Similarity=0.047 Sum_probs=54.5
Q ss_pred CCChhhHHHHHHHHHhcCCHH---HHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHH
Q 005317 545 VPSKEHYGCMIDLLCRAGRLS---DAENMIENMPH-QK--DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHI 618 (702)
Q Consensus 545 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 618 (702)
.|+..+--.+..++.+..+.+ +++.++++... .| .....--|.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 466666666777777776544 46666666554 34 3456667788899999999999999999999998765443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.76 E-value=1 Score=35.99 Aligned_cols=74 Identities=7% Similarity=0.047 Sum_probs=49.0
Q ss_pred CCChhhHHHHHHHHHhcCCHH---HHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHH
Q 005317 545 VPSKEHYGCMIDLLCRAGRLS---DAENMIENMPH-QK--DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHI 618 (702)
Q Consensus 545 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 618 (702)
.|+..+--.+..++.+..+.+ +++.++++... .| ....+--|.-++.+.|+++.|.+..+.+++..|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 345555555666666665443 45556655544 33 3456666777888888888888888888888887765443
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.66 E-value=1.7 Score=36.38 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005317 550 HYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
.--.+..+|.+.|++++|+.+++.+..
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 333456666666777777776666655
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.51 E-value=23 Score=37.34 Aligned_cols=227 Identities=10% Similarity=-0.046 Sum_probs=120.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 005317 390 GYEEEAFEYLALMRREGPRPNEFA----FASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEA 465 (702)
Q Consensus 390 g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 465 (702)
.+.+.|...+....... ..+... ...+.......+....+...+....... .+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37788988888876543 223222 2223333444452444444544443322 3333344455556677999999
Q ss_pred HHHHhhCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 005317 466 SQIFYETESDD---IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKY 542 (702)
Q Consensus 466 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 542 (702)
...|+.|.... ....-=+..++...|+.++|..+|+++.. +. +|..++.+ .+.|..-. . ...
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~-------~-~~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYE-------L-KID 369 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCC-------C-CCC
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCC-------C-CCC
Confidence 99999887532 22222345567788999999999988874 21 33333321 12221000 0 000
Q ss_pred CCCCC-hh-----hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CC
Q 005317 543 GFVPS-KE-----HYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHP---SC 613 (702)
Q Consensus 543 ~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~ 613 (702)
...+. .. .-..-+..+...|....|...+.......+......+.......|..+.++....+....+. ..
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~ 449 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERF 449 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHS
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhC
Confidence 01110 00 11123456778899999988887776544545455565666678888887766654322210 11
Q ss_pred chhHHHHHHHHHhcCChHHHH
Q 005317 614 AGTHITLANIYAAKGRWREAA 634 (702)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~ 634 (702)
+..|..++.-+.+.-..+.++
T Consensus 450 P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 450 PLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp CCTTHHHHHHHHTTSSSCHHH
T ss_pred CcchHHHHHHHHHHcCCCHHH
Confidence 234555555555554444443
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.81 E-value=17 Score=34.71 Aligned_cols=165 Identities=13% Similarity=0.125 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHcccC
Q 005317 350 SIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYL----ALMRREGPRPNEFAFASVLSVCGNMA 425 (702)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~ 425 (702)
++..-|.+.+++++|++++.. -...+.+.|+...+-++. +-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 344457777888888777533 234455666666555544 44455778888888888877776654
Q ss_pred cHHH-HHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005317 426 ILEQ-GKQIHAHVM----SIG--LERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIH 498 (702)
Q Consensus 426 ~~~~-a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 498 (702)
..+. =..+.+.++ +.| ..-++..-..+...|.+.+++.+|+..|---..+.+..+..++.-+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--- 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--- 185 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence 3211 122333332 334 233677778888999999999999988853223333555555444433332111
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005317 499 LFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSD 540 (702)
Q Consensus 499 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 540 (702)
++...-..++ -|...++...|..+++...+
T Consensus 186 -----------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -----------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222222 34556788888887776654
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.40 E-value=26 Score=35.32 Aligned_cols=186 Identities=7% Similarity=0.030 Sum_probs=115.9
Q ss_pred CCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHH----HHHhc
Q 005317 389 GGYEEEAFEYLALMRRE-----GPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALIN----MYSKC 459 (702)
Q Consensus 389 ~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~ 459 (702)
.|++++|++.+..+.+. +..........++..|...++++...+.+..+.+..... ......+++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37788898887766542 244456678888999999999998888776655432221 222233333 22223
Q ss_pred CC--HHHHHHHHhhCCC---C-------CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH-----HHHHHHHHHH
Q 005317 460 GS--IKEASQIFYETES---D-------DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS-----VTFMGVLTAC 522 (702)
Q Consensus 460 g~--~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~ 522 (702)
.. .+.-..+.+.... . .......|...+...|++.+|.+++..+...-...+. ..+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 2223333333331 1 1123456778888899999999999887632112221 2456677788
Q ss_pred hccCcHHHHHHHHHHhHHhh-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005317 523 SHAGLVDLGFHYFNLMSDKY-GFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMP 575 (702)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 575 (702)
...+++.+|..+++++..+. ...++ ...+..++..+...+++.+|...|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88999999999988874321 12222 3456677888888899988888776643
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.73 E-value=5 Score=30.15 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 005317 492 YSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMID 556 (702)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 556 (702)
+.-+..+-++.+....+-|++....+.+++|.+.+++..|.++|+.+..+. .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344555666666667788999999999999999999999999999887663 344556776664
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.63 E-value=6 Score=29.56 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=62.3
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005317 223 GALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQ 302 (702)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (702)
...++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+.+..||...|-+|-.. +.|-.+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 355777777777766653 333333445667889999999999999999999999887654 6788888888887887
Q ss_pred HCCCCCChhhH
Q 005317 303 ESDVKPNEYTF 313 (702)
Q Consensus 303 ~~g~~p~~~t~ 313 (702)
.+| .|....|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 766 4444444
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.38 E-value=18 Score=35.58 Aligned_cols=57 Identities=7% Similarity=-0.052 Sum_probs=25.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 005317 518 VLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYGCMIDLLCRAGRLSDAENMIENM 574 (702)
Q Consensus 518 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 574 (702)
++..|...|++.+|.+++..+.+...-..+ .++|..-+..|...|++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444455555555555555555443211111 223333444455555555555554443
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.06 E-value=5.6 Score=29.66 Aligned_cols=87 Identities=11% Similarity=0.055 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005317 223 GALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQ 302 (702)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (702)
...++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+.+..||...|-+|-.. +.|-.+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 355777777777766653 333333445667889999999999999999999999887654 7788888888888887
Q ss_pred HCCCCCChhhHH
Q 005317 303 ESDVKPNEYTFA 314 (702)
Q Consensus 303 ~~g~~p~~~t~~ 314 (702)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 44444443
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.56 E-value=49 Score=36.67 Aligned_cols=251 Identities=10% Similarity=-0.008 Sum_probs=135.7
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC----CCh--hhHHHHHHHHHcCCChHHHHHHHHHHHHCCC-------CCCHHHHHHH
Q 005317 351 IMAMYSKCGQLTSTSIVFHGMIR----RDI--ISWSTIIGGYSQGGYEEEAFEYLALMRREGP-------RPNEFAFASV 417 (702)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------~p~~~~~~~l 417 (702)
..-+....|+.++++..++.... .+. ..-..+.-+....|..+++..++.......- .+....-..+
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 34456678899999999988754 222 2333444556667766778887777655321 0111111222
Q ss_pred --HHHHcccCcHHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCHHHH--HHHHHHHHHcC
Q 005317 418 --LSVCGNMAILEQGKQIHAHVMSIGLE-RTAMIKSALINMYSKCGSIKEASQIFYETES-DDIVSW--TAMINGYAEHG 491 (702)
Q Consensus 418 --l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~li~~~~~~g 491 (702)
--++...++. .+.+.+..+....-. .....--++...+.-.|+.+....++..+.+ .+.... -++.-++...|
T Consensus 460 GLGla~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 460 GIGLAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHHHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 2223333443 334444443332111 0011112344445567887777777665432 222333 33334455778
Q ss_pred ChHHHHHHHHHchhCCCCCCHH-HHH---HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 005317 492 YSQEAIHLFEKVPMVGLRPDSV-TFM---GVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDA 567 (702)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~~~-~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 567 (702)
+.+.+..+.+.+... .++. -|. .+.-+|+..|+.....+++..+.+. ...++.-...+.-++...|+.+.+
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHH
Confidence 988888888887753 3332 232 3445678889988777799888653 222333333444445556776667
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH--HhcCC-HHHHHHHHHHHH
Q 005317 568 ENMIENMPHQKDDVVWSTLLRAC--MVQGD-VNCGRHTAEKIL 607 (702)
Q Consensus 568 ~~~~~~~~~~p~~~~~~~l~~~~--~~~g~-~~~A~~~~~~~~ 607 (702)
.++++.+....++.+......++ ...|+ ...+...+..+.
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 77776665544444444333333 23333 256777777775
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.54 E-value=8.9 Score=44.35 Aligned_cols=59 Identities=8% Similarity=0.004 Sum_probs=25.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 005317 516 MGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS---KEHYGCMIDLLCRAGRLSDAENMIENM 574 (702)
Q Consensus 516 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 574 (702)
.-++..+.+.+.++.+.++-..+.+..+-.++ ...|..+.+.+...|++++|...+-.+
T Consensus 903 ~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 903 LHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 33444444445555555444444332110100 113444555555555555555555443
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.09 E-value=28 Score=34.23 Aligned_cols=89 Identities=9% Similarity=-0.042 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC---CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCch----hH
Q 005317 553 CMIDLLCRAGRLSDAENMIENMPH---QKD-----DVVWSTLLRACMVQGDVNCGRHTAEKILELH---PSCAG----TH 617 (702)
Q Consensus 553 ~l~~~~~~~g~~~~A~~~~~~~~~---~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~----~~ 617 (702)
.++..|...|++.+|.+++.++.. +.| ...+-.-+..|...+++..+...+.++.... +.+|. ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 688999999999999988887755 211 2344555667889999999999999987643 22332 33
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHH
Q 005317 618 ITLANIYA-AKGRWREAAEVRKMMR 641 (702)
Q Consensus 618 ~~l~~~~~-~~g~~~~A~~~~~~~~ 641 (702)
..-|..+. ..++|.+|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 44566677 8999999988876653
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.46 E-value=6.2 Score=39.13 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCCCChhhHH
Q 005317 480 WTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSD----KYGFVPSKEHYG 552 (702)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~ 552 (702)
...++..+...|++++|+..++.+.... +-+...+..+|.++.+.|+..+|.+.|+.+.+ ..|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3446677788899999998888887642 55778899999999999999999998887644 358888866543
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.22 E-value=13 Score=34.09 Aligned_cols=121 Identities=13% Similarity=0.082 Sum_probs=72.1
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChh----hHHHHHHHHHhc
Q 005317 486 GYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKE----HYGCMIDLLCRA 561 (702)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 561 (702)
.+.+.|+.++|++....-++.. +-|...-..++.-+|-.|++++|.+-++.+.+ +.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 4456778888888777766653 44666667778888888888888887777763 356532 33333332
Q ss_pred CCHHHHH-HHHHhCCC----CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCCCCchhH
Q 005317 562 GRLSDAE-NMIENMPH----QKDDVVWSTLLRAC--MVQGDVNCGRHTAEKILELHPSCAGTH 617 (702)
Q Consensus 562 g~~~~A~-~~~~~~~~----~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~~~ 617 (702)
+... ++|.--.. .....-...++.+. ...|+.+.|.++-.++++.-|..+...
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 137 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCc
Confidence 1111 12222111 11122223444443 366888888888888888877665533
No 262
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.20 E-value=5.4 Score=43.10 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=38.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005317 521 ACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMP 575 (702)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 575 (702)
-|...|+++.|+++-++.+. ..|+ -.+|..|+.+|...|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34566778888887777763 3565 6778888888888888888887777764
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.63 E-value=13 Score=32.21 Aligned_cols=55 Identities=5% Similarity=-0.014 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 005317 593 QGDVNCGRHTAEKILELH--PSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIK 647 (702)
Q Consensus 593 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 647 (702)
.+....+..+|+.+...+ -..+..|...+..+...|++.+|.++++.-.+.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344556667777666543 4456666677777777777777777777766655443
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.50 E-value=14 Score=27.60 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=61.0
Q ss_pred CCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005317 122 VNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMW 201 (702)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 201 (702)
...++|.-+-+.+...+. ...+--..++.+...|++++|..+.+...-||...|-+|-. .+.|-.+.+..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777766653 33333344456778899999999999999999999987755 36788888877777776
Q ss_pred HCCCCCChhhH
Q 005317 202 RSKEQGDSYTF 212 (702)
Q Consensus 202 ~~~~~p~~~~~ 212 (702)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 3343344
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.77 E-value=10 Score=30.22 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=47.8
Q ss_pred hHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHH
Q 005317 493 SQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDL 557 (702)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 557 (702)
.-+..+-++.+....+-|++......+++|.+.+++..|..+|+.+..+ ..+...+|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 3345555666666778899999999999999999999999999988766 34456667766643
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.06 E-value=4.5 Score=37.00 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005317 556 DLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC 613 (702)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 613 (702)
..+.+.|++++|+..+..-++ +| |......|...++-.|++++|..-++.+.+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345677788887777665544 44 55566667777778888888888888888888744
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.02 E-value=11 Score=28.41 Aligned_cols=62 Identities=6% Similarity=-0.080 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005317 190 NKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLAT 252 (702)
Q Consensus 190 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 252 (702)
.-+..+-+..+....+.|++......+++|.+.+++..|.++++.++..- .+...+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33455556666666677777777777777777777777777777776553 223444555543
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.73 E-value=31 Score=39.83 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005317 549 EHYGCMIDLLCRAGRLSDAENMIENMPH-----QKD--DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLA 621 (702)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 621 (702)
.-|..++..+.+.|.++.+.++-+.+.. .++ ...|..+...+...|++++|-..+-.+-.. ..-..++..|+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~cLr~LV 978 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 3456677777777777777766554332 111 125667777777778887777766554332 22456666777
Q ss_pred HHHHhcCChHH
Q 005317 622 NIYAAKGRWRE 632 (702)
Q Consensus 622 ~~~~~~g~~~~ 632 (702)
..+++.|..++
T Consensus 979 ~~lce~~~~~~ 989 (1139)
T 4fhn_B 979 NQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHCCHHH
T ss_pred HHHHhCCChhh
Confidence 77777766554
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.98 E-value=61 Score=32.61 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=95.3
Q ss_pred cCCHHHHHHHHhcCCC-----C----ChhhHHHHHHHHHcCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----cc
Q 005317 358 CGQLTSTSIVFHGMIR-----R----DIISWSTIIGGYSQGGYEEEAFEYLALMRRE-GPRPNEFAFASVLSVC----GN 423 (702)
Q Consensus 358 ~g~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~----~~ 423 (702)
.|++++|++.+-.+.+ . .......++..|...|+++...+.+.-+... |..+.. ...++..+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 3677777776644421 1 3345667788888888888887777666543 332222 22333322 22
Q ss_pred cCcHHHHHH--HHHHHHH--hC-CCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----C-C----HHHHHHHHHH
Q 005317 424 MAILEQGKQ--IHAHVMS--IG-LER---TAMIKSALINMYSKCGSIKEASQIFYETES----D-D----IVSWTAMING 486 (702)
Q Consensus 424 ~~~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~~ 486 (702)
....+.... +.+.... .| +-. .......|...|...|++.+|..++..+.. . + +..+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222221111 1111100 01 111 123345677888888999999888887651 1 1 3456667778
Q ss_pred HHHcCChHHHHHHHHHchh----CCCCCCH--HHHHHHHHHHhccCcHHHHHHH
Q 005317 487 YAEHGYSQEAIHLFEKVPM----VGLRPDS--VTFMGVLTACSHAGLVDLGFHY 534 (702)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~ 534 (702)
|...+++..|..++.++.. ...+|+. ..+...+..+...+++.+|-+.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~ 240 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY 240 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8888899998888887642 2222222 2334444455556666655443
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.34 E-value=23 Score=26.49 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=37.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHH
Q 005317 455 MYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFM 516 (702)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 516 (702)
.+...|++++|..+.+....||...|-+|.. .+.|-.+++..-+.++..+| .|....|.
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3456677777777777777777777766543 45666666666666666555 44444443
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.83 E-value=25 Score=28.97 Aligned_cols=49 Identities=14% Similarity=0.000 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 005317 599 GRHTAEKILELH--PSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIK 647 (702)
Q Consensus 599 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 647 (702)
+.++|+.+...+ -..+..|...+..+...|++.+|.++++.-.+.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 677888877654 5567788888888888999999999888887776544
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.94 E-value=50 Score=30.23 Aligned_cols=21 Identities=0% Similarity=-0.027 Sum_probs=9.5
Q ss_pred cCChhHHHHHHHHHHHCCCCC
Q 005317 288 MGEEENAFDAFVRMQESDVKP 308 (702)
Q Consensus 288 ~g~~~~a~~~~~~m~~~g~~p 308 (702)
.+......++++.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 344333444445555555443
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.86 E-value=12 Score=37.55 Aligned_cols=59 Identities=14% Similarity=0.069 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005317 550 HYGCMIDLLCRAGRLSDAENMIENMPH-----QKDDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
+...+++.|.+.|++++|.+.+.++.. +.-...+..++..+...+++..+...++++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555555555555555544433 11223444444445555555555555555443
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.49 E-value=23 Score=28.35 Aligned_cols=60 Identities=7% Similarity=-0.062 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005317 192 EGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLAT 252 (702)
Q Consensus 192 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 252 (702)
+..+-++.+....+.|++......+++|.+.+++..|.++++-++..- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 445555666666777888888888888888888888888887777653 333445655543
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.12 E-value=36 Score=28.45 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 005317 599 GRHTAEKILELH--PSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIK 647 (702)
Q Consensus 599 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 647 (702)
+.++|+.+...+ -..+..|...+..+...|++.+|.++++.-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 556777776654 5566777788888888888888888888877766554
No 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=69.20 E-value=55 Score=28.18 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=19.6
Q ss_pred chhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCC
Q 005317 142 SVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGH 189 (702)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 189 (702)
+..+....+..+.+.|..+....+.+.+..++...-...+.++.+.++
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333333344444444443333333333334444433344444444443
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.93 E-value=45 Score=32.23 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC---HHHHHHHHHHHHHcCC--hHHHHHHHHHchhCCCCCCHH
Q 005317 450 SALINMYSKCGSIKEASQIFYETESDD---IVSWTAMINGYAEHGY--SQEAIHLFEKVPMVGLRPDSV 513 (702)
Q Consensus 450 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 513 (702)
+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+...+++..+...|+-+...
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 557888889999999999999998763 2344445555544333 345677777777766544443
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.31 E-value=47 Score=30.40 Aligned_cols=116 Identities=12% Similarity=0.022 Sum_probs=53.9
Q ss_pred hhHHHHHHccCChHHHHHHhhcCCCCCcc----hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHH--HHHHHHHHh
Q 005317 45 NSQLKHLVKSGYLHDARKMFDTMTQRDEI----SWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPF--ILSLALKAC 118 (702)
Q Consensus 45 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~ 118 (702)
+..+...++.|+++....+++.-...+.. -++ .+..-+..|+.+-...+++. |..++.. .-.+.+...
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSREDIVELLLRH-----GADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTCCCHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHHHHHHHHHc-----CCCCcccCCCCCCHHHHH
Confidence 34455667778888877777764433211 122 33334456665544433332 2222211 011222333
Q ss_pred hccCCchhhhHHHHHHHHhcCCCchhH--HHHHHHhhhcCCChhHHHHHhccCC
Q 005317 119 ALNVNVNYGESLHGYTVKTGFVNSVFV--GSALLDMYTKLGKIELGCRVFDEMP 170 (702)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~ 170 (702)
+..|+. ++.+.+++.|..++... ..+.+...+..|+.+-+..+++.-.
T Consensus 80 ~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 80 AIAGSV----KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp HHHTCH----HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHcCCH----HHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 334443 34445555665443211 1123333455677766666666543
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.25 E-value=18 Score=36.28 Aligned_cols=95 Identities=11% Similarity=-0.092 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHchh---CCCCCCHHH--HH
Q 005317 448 IKSALINMYSKCGSIKEASQIFYETES------DDIVSWTAMINGYAEHGYSQEAIHLFEKVPM---VGLRPDSVT--FM 516 (702)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~--~~ 516 (702)
....+.+.|.+.|+++.|.+.|.++.. .-+..+-.++..+...+++..+...+.++.. .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455688899999999999999988762 2345777788888889999999998888653 332333322 11
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhh
Q 005317 517 GVLTACSHAGLVDLGFHYFNLMSDKY 542 (702)
Q Consensus 517 ~ll~~~~~~g~~~~A~~~~~~~~~~~ 542 (702)
.-...+...+++..|-+.|-+....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 22223456788999999998887664
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=65.92 E-value=1.1e+02 Score=32.50 Aligned_cols=42 Identities=33% Similarity=0.271 Sum_probs=23.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 005317 179 AIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASAD 221 (702)
Q Consensus 179 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 221 (702)
++|-.+.|.|++++|.++.++.... +.--...|...+..++.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 5677777888888888887665322 11112355556666653
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.37 E-value=69 Score=27.83 Aligned_cols=146 Identities=14% Similarity=0.016 Sum_probs=77.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 005317 452 LINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLG 531 (702)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 531 (702)
.+..+.+.|..+....+.+.+..++...-...+.++...++.+ +...+.++.. .++...-...+.++...++.+ +
T Consensus 39 A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~ 113 (211)
T 3ltm_A 39 AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-A 113 (211)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-G
T ss_pred HHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-H
Confidence 3344444444333333444444556655556666666666543 3333333332 455555555666666655533 3
Q ss_pred HHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005317 532 FHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 532 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
...+..+.. .++..+-...+.++.+.|.. ++...+..+...++...-...+.++...+. ..+...+.++++
T Consensus 114 ~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 114 VEPLIKALK----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHTT----CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 333333322 45655666666777776664 345555555556777766677777776665 445555555554
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.33 E-value=44 Score=29.75 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=9.4
Q ss_pred hccCCchhhhHHHHHHHHhc
Q 005317 119 ALNVNVNYGESLHGYTVKTG 138 (702)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~ 138 (702)
+..|+.+..+.+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455555555544444444
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=63.09 E-value=73 Score=27.37 Aligned_cols=147 Identities=14% Similarity=0.015 Sum_probs=81.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHH
Q 005317 451 ALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDL 530 (702)
Q Consensus 451 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 530 (702)
..+..+.+.+..+....+.+.+..++...-...+.++...+..+. ...+.++.. .++...-...+.++...++.+
T Consensus 33 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~- 107 (201)
T 3ltj_A 33 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDER- 107 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-
T ss_pred HHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-
Confidence 334444444443333444444555666666666666777666533 333333332 456666666666666666543
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005317 531 GFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 531 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
+...+..+.. .++..+-...+.++.+.|.. ++...+..+...++...-...+.++...|+ ..+...+..+++
T Consensus 108 ~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 108 AVEPLIKALK----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3333333322 45666666667777777764 455555555556777777777777777765 345555555553
No 284
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=58.90 E-value=20 Score=30.71 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCCCH--HH-----HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHH
Q 005317 564 LSDAENMIENMPHQKDD--VV-----WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635 (702)
Q Consensus 564 ~~~A~~~~~~~~~~p~~--~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 635 (702)
++.|+.+|+.+...-+. .. -......|.+.|.+++|.+++++.+...|.+...-.-|..+-.+..-+..-++
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 35666677766652221 11 12334568888888888888888887777666666666665555555444433
No 285
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=56.86 E-value=1.5e+02 Score=29.41 Aligned_cols=205 Identities=12% Similarity=0.080 Sum_probs=97.1
Q ss_pred hHHHHHHccCChHHHHHHhhcCCCCC---cchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCH--HHHHHHHHHhhc
Q 005317 46 SQLKHLVKSGYLHDARKMFDTMTQRD---EISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDP--FILSLALKACAL 120 (702)
Q Consensus 46 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~ 120 (702)
+.+..-++.|+++-...+++.-..++ ..-.+. +..-+..|+.+-+..+++.- ..++. ..-.+.+...+.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP-LHMAARAGHTEVAKYLLQNK-----AKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCH-HHHHHHHTCHHHHHHHHHHT-----CCSSCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCC-----CCCCCCCCCCCCHHHHHHH
Confidence 44666778899988888887644432 222222 33345567766555555432 12211 011123344445
Q ss_pred cCCchhhhHHHHHHHHhcCCCchh--HHHHHHHhhhcCCChhHHHHHhccCCCC---CcchHHHHHHHHHhCCChHHHHH
Q 005317 121 NVNVNYGESLHGYTVKTGFVNSVF--VGSALLDMYTKLGKIELGCRVFDEMPLR---NVVSWTAIITGLVRAGHNKEGLI 195 (702)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~ 195 (702)
.|+.+ +.+.+++.|..++.. ...+.+...++.|+.+.+..+++.-... +...++. +...+..|+.+-
T Consensus 90 ~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~~--- 161 (437)
T 1n11_A 90 IGHTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVRV--- 161 (437)
T ss_dssp HTCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHH---
T ss_pred CCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHHH---
Confidence 55554 445555566554422 1122334445667877777777654322 2222223 333445566543
Q ss_pred HHHHHHHCCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHhhhCCChHHHHHHHhc
Q 005317 196 YFAEMWRSKEQGDSYT--FAIVLKASADSGALNFGREIHTIMLKRGFDVVSFV--ANSLATMYSKCGKLDYSLRLFER 269 (702)
Q Consensus 196 ~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 269 (702)
++.+.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..++... ....+...+..|+.+-+..+++.
T Consensus 162 -v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 162 -AELLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp -HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred -HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 344444555444321 112233334455544 3334444554433221 11233444556666666666654
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.31 E-value=68 Score=29.66 Aligned_cols=12 Identities=0% Similarity=-0.034 Sum_probs=4.6
Q ss_pred hCCChHHHHHHH
Q 005317 256 KCGKLDYSLRLF 267 (702)
Q Consensus 256 ~~g~~~~A~~~~ 267 (702)
..|+.+-+.-++
T Consensus 138 ~~~~~~~v~~Ll 149 (285)
T 3kea_A 138 MLNDVSIVSYFL 149 (285)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 334443333333
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.07 E-value=95 Score=26.93 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=29.9
Q ss_pred hHHHHHHHHHchhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC
Q 005317 493 SQEAIHLFEKVPMVGLRPDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP 546 (702)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 546 (702)
..++.++|..|...|+--.. .-|......+...|++.+|.++|+.-++. +-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 44666666666665554433 34445555555666666666666665554 4444
No 288
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.99 E-value=1e+02 Score=26.71 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q 005317 474 SDDIVSWTAMINGYAEHGY 492 (702)
Q Consensus 474 ~~~~~~~~~li~~~~~~g~ 492 (702)
.++...-...+.++...|.
T Consensus 123 d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 3444444444444444443
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.89 E-value=79 Score=27.96 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=34.7
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHhhhCC
Q 005317 183 GLVRAGHNKEGLIYFAEMWRSKEQGDSYT--FAIVLKASADSGALNFGREIHTIMLKRGFDVVSFV--ANSLATMYSKCG 258 (702)
Q Consensus 183 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g 258 (702)
..++.|+.+-+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -...+...+..|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 33445565555555555444444333221 112223333344443 3333334444333211 112233344455
Q ss_pred ChHHHHHHHhcc
Q 005317 259 KLDYSLRLFERM 270 (702)
Q Consensus 259 ~~~~A~~~~~~~ 270 (702)
+.+-+..+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 555555555543
No 290
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=54.64 E-value=39 Score=34.48 Aligned_cols=59 Identities=14% Similarity=-0.016 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005317 584 STLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
..|++..+-...++.|...|.++..+.|.+...|+.|+.+....|+.-+|.-++-+...
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 34555555556677888888888888888888888888888888888777766655543
No 291
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=54.24 E-value=99 Score=26.32 Aligned_cols=149 Identities=8% Similarity=-0.024 Sum_probs=61.8
Q ss_pred hhcCCChhHHHHHhccCC----CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH--HHHHHHHhccCChH
Q 005317 153 YTKLGKIELGCRVFDEMP----LRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTF--AIVLKASADSGALN 226 (702)
Q Consensus 153 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~ 226 (702)
.+..|+.+....++..-. ..|..-++.|.. .++.|+.+ +++.+.+.|..++.... .+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345577777777776543 122223333333 33445543 44444455554443221 12233333445554
Q ss_pred HHHHHHHHHHHhCCCCchhH--HHHHHHHhhhCCChHHHHHHHhcc-CC---CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 005317 227 FGREIHTIMLKRGFDVVSFV--ANSLATMYSKCGKLDYSLRLFERM-ST---RDVISWTTIITSYVQMGEEENAFDAFVR 300 (702)
Q Consensus 227 ~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (702)
-+..+++. .+..++... -.+.+...+..|+.+-+..+++.- .. +|..-++.+..+.........-.++++.
T Consensus 87 ~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 87 ILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp HHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 44433322 221111110 011233344556666555555543 11 2222333333333222223333455555
Q ss_pred HHHCCCCCC
Q 005317 301 MQESDVKPN 309 (702)
Q Consensus 301 m~~~g~~p~ 309 (702)
+.+.|..++
T Consensus 164 Ll~~ga~~~ 172 (201)
T 3hra_A 164 LMENGADQS 172 (201)
T ss_dssp HHHTTCCTT
T ss_pred HHHCCCCCC
Confidence 556665544
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.32 E-value=58 Score=28.79 Aligned_cols=19 Identities=11% Similarity=-0.055 Sum_probs=9.5
Q ss_pred HhhhcCCChhHHHHHhccC
Q 005317 151 DMYTKLGKIELGCRVFDEM 169 (702)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~~ 169 (702)
...++.|+.+-+.-+++.-
T Consensus 47 ~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 47 HWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHcC
Confidence 3344455555555555443
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.28 E-value=93 Score=24.70 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=40.0
Q ss_pred HHHHHHhhhCCChHHHHHHHhccCCCC---cchHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCC
Q 005317 248 NSLATMYSKCGKLDYSLRLFERMSTRD---VISWTTIITSYVQMGE--EENAFDAFVRMQESDVKPN 309 (702)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 309 (702)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 567777888888888888888887552 1233344445544432 3567778888877765443
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.53 E-value=46 Score=30.13 Aligned_cols=89 Identities=16% Similarity=0.025 Sum_probs=48.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChhh-------HHHHHHHHh--ccCChHHHHHHHHHHHHhC---------CC-
Q 005317 181 ITGLVRAGHNKEGLIYFAEMWRSKEQGDSYT-------FAIVLKASA--DSGALNFGREIHTIMLKRG---------FD- 241 (702)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~- 241 (702)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3445567888887777777777666555332 233444432 5677777777766554321 00
Q ss_pred CchhHHHHHHHHhhhCCChHHHHHHHhcc
Q 005317 242 VVSFVANSLATMYSKCGKLDYSLRLFERM 270 (702)
Q Consensus 242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 270 (702)
.|..- .+.+...+..|+.+-+.-+++.-
T Consensus 89 ~d~~g-~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 89 VYYRG-QTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp SSEES-BCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cccCC-CCHHHHHHHcCCHHHHHHHHhCC
Confidence 00011 22334445567777666666643
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.99 E-value=49 Score=29.25 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005317 598 CGRHTAEKILELH--PSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVI 646 (702)
Q Consensus 598 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 646 (702)
.+..+|+.+...+ -..+..|...+..+...|++.+|..+|+.-++.+..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4556666666543 445666777777777777777777777776665543
No 296
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=48.83 E-value=2.7e+02 Score=29.53 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=18.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005317 181 ITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKAS 219 (702)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 219 (702)
..++.-.|+++.|++++-+. ...|.+.+.+.+..+
T Consensus 301 f~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~ 335 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL 335 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc
Confidence 44555566777776665543 234444555544443
No 297
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=42.04 E-value=79 Score=30.44 Aligned_cols=50 Identities=10% Similarity=-0.059 Sum_probs=22.4
Q ss_pred hhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005317 153 YTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWR 202 (702)
Q Consensus 153 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 202 (702)
.+..|+.+-+.-+++.-...+...-.+.+...+..|+.+-+..+++....
T Consensus 60 A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 109 (364)
T 3ljn_A 60 ACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE 109 (364)
T ss_dssp HHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccc
Confidence 34445665555555543322221112223333455665555555554333
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.21 E-value=53 Score=33.44 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----H--HHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005317 548 KEHYGCMIDLLCRAGRLSDAENMIENMPHQKD----D--VVW-STLLRACMVQGDVNCGRHTAEKILELHPSC 613 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 613 (702)
...++.+++.|...+.++.|..+..+...+.. . ..| --++..+...+++.+|.+.+..++..-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 34455555556666666666666655543211 0 011 122333445555555555555555555443
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.09 E-value=88 Score=25.75 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=39.4
Q ss_pred HHHHHHhhhCCChHHHHHHHhccCCCC---cchHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCC
Q 005317 248 NSLATMYSKCGKLDYSLRLFERMSTRD---VISWTTIITSYVQMGE--EENAFDAFVRMQESDVKPN 309 (702)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 309 (702)
+.++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 567777888888888888888887552 2233344445544322 4467777777777665443
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.88 E-value=1.5e+02 Score=24.33 Aligned_cols=66 Identities=8% Similarity=0.123 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHHHcCCC--hHHHHHHHHHHHHCCCCCCHHH
Q 005317 348 ANSIMAMYSKCGQLTSTSIVFHGMIRRD---IISWSTIIGGYSQGGY--EEEAFEYLALMRREGPRPNEFA 413 (702)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~ 413 (702)
.+.++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3557777888889999999998886652 2344555556665432 4567778888877775544433
No 301
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.75 E-value=1.2e+02 Score=26.57 Aligned_cols=22 Identities=5% Similarity=0.019 Sum_probs=11.5
Q ss_pred HHHHHccCchHHHHHHHHHHHH
Q 005317 317 ISASANLARIQWGEQLHAHVLR 338 (702)
Q Consensus 317 l~~~~~~~~~~~a~~~~~~~~~ 338 (702)
+...+..|+...+.++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455556555555555543
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.57 E-value=1.5e+02 Score=23.54 Aligned_cols=65 Identities=8% Similarity=0.129 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHHHcCCC--hHHHHHHHHHHHHCCCCCCHHH
Q 005317 349 NSIMAMYSKCGQLTSTSIVFHGMIRRD---IISWSTIIGGYSQGGY--EEEAFEYLALMRREGPRPNEFA 413 (702)
Q Consensus 349 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~ 413 (702)
+.++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 457777888899999999998886552 2344555556665542 4567788888877775554433
No 303
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.29 E-value=2.9e+02 Score=26.58 Aligned_cols=67 Identities=7% Similarity=0.105 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHHHcCCC--hHHHHHHHHHHHHCCCCCCHHHH
Q 005317 348 ANSIMAMYSKCGQLTSTSIVFHGMIRRD---IISWSTIIGGYSQGGY--EEEAFEYLALMRREGPRPNEFAF 414 (702)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~ 414 (702)
.+.++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+.+++..+...|+-+.....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 3567777778888888888888876552 2334445555554432 34566777777766655444433
No 304
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.12 E-value=1.7e+02 Score=23.97 Aligned_cols=52 Identities=12% Similarity=0.053 Sum_probs=34.0
Q ss_pred HHHHHHHHHchhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC
Q 005317 494 QEAIHLFEKVPMVGLRPDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP 546 (702)
Q Consensus 494 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 546 (702)
+++.++|..|...|+--.. .-|......+...|++.+|.++|+.-++. +-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 3466777777776665544 34556666666777777777777776655 5555
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.79 E-value=1.8e+02 Score=25.35 Aligned_cols=108 Identities=12% Similarity=0.019 Sum_probs=50.5
Q ss_pred hhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHhccCChH
Q 005317 153 YTKLGKIELGCRVFDEMPL---RNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYT---FAIVLKASADSGALN 226 (702)
Q Consensus 153 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~ 226 (702)
.++.|+++....+++.-.. ++..-. +.+...++.|+.+- ++.+.+.|..++... -.+.+...+..|+.+
T Consensus 16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ 90 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS 90 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH
T ss_pred HHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH
Confidence 3455677766666654332 222222 23445556676544 344444444333221 112334444556654
Q ss_pred HHHHHHHHHHHhCCCCchhH--HHHHHHHhhhCCChHHHHHHHhc
Q 005317 227 FGREIHTIMLKRGFDVVSFV--ANSLATMYSKCGKLDYSLRLFER 269 (702)
Q Consensus 227 ~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 269 (702)
- ++.+.+.|..++... ....+...+..|+.+-+..+++.
T Consensus 91 ~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 91 M----VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp H----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred H----HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 3 344445555444221 11234444556676666666554
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.39 E-value=1.2e+02 Score=27.21 Aligned_cols=22 Identities=5% Similarity=-0.171 Sum_probs=14.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 005317 180 IITGLVRAGHNKEGLIYFAEMW 201 (702)
Q Consensus 180 li~~~~~~~~~~~a~~~~~~m~ 201 (702)
-++.+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3566667777777777776654
No 307
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=35.80 E-value=2.5e+02 Score=25.44 Aligned_cols=244 Identities=7% Similarity=-0.074 Sum_probs=0.0
Q ss_pred HHhhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccC-CchhhhHHHHHHH-HhcC
Q 005317 62 KMFDTMTQRDEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNV-NVNYGESLHGYTV-KTGF 139 (702)
Q Consensus 62 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~-~~~~ 139 (702)
.++..+..+|...-...+.++.+.|..+..-.+.+.+. .++...-...+.++...+ .......+...+. ..--
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~-----d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCS-----DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN 101 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHc-----CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc
Q ss_pred CCchhHHHHHHHhhhcCC------ChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 005317 140 VNSVFVGSALLDMYTKLG------KIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFA 213 (702)
Q Consensus 140 ~~~~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 213 (702)
.++..+-...+.++.+.+ .......+...+..++...-...+.++.+.|+....-.+...+ -.++...-.
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l----~d~~~~vr~ 177 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLL----KDPNGDVRN 177 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHH----TCSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----cCCCHHHHH
Q ss_pred HHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChh
Q 005317 214 IVLKASADSG-ALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEE 292 (702)
Q Consensus 214 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 292 (702)
..+.++...+ +...+...+..+.+ .++..+-...+.++.+.|+......+...+..++ .-...+.++.+.|+ .
T Consensus 178 ~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~ 251 (280)
T 1oyz_A 178 WAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-K 251 (280)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-G
T ss_pred HHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-h
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 005317 293 NAFDAFVRMQESDVKPNEYTFAAIISASAN 322 (702)
Q Consensus 293 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 322 (702)
.+...+.++... .++.......+....+
T Consensus 252 ~~~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 252 TLLPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp GGHHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred hhhHHHHHHHhc--CCCcHHHHHHHHHhhc
No 308
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.08 E-value=2.2e+02 Score=24.57 Aligned_cols=62 Identities=11% Similarity=0.182 Sum_probs=40.0
Q ss_pred HHHHHH---hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCc-----hHHHHHHHHHHHHhCCCC
Q 005317 281 IITSYV---QMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLAR-----IQWGEQLHAHVLRLGLVD 343 (702)
Q Consensus 281 li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 343 (702)
+|+++. +-.+++.|+-.+.+|.+.| .|....-..++.+.-..|. +..|...++.....|.+.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 455544 4589999999999999999 6665555566666555553 334445555555555443
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.67 E-value=87 Score=23.33 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=29.4
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHH
Q 005317 258 GKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAF 295 (702)
Q Consensus 258 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 295 (702)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887667665543
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.86 E-value=1.6e+02 Score=24.83 Aligned_cols=18 Identities=0% Similarity=0.097 Sum_probs=9.6
Q ss_pred HHHccCChHHHHHHhhcC
Q 005317 50 HLVKSGYLHDARKMFDTM 67 (702)
Q Consensus 50 ~~~~~g~~~~A~~~~~~~ 67 (702)
..+..|+.+....+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHHTTCHHHHHHHHTCT
T ss_pred HHHHhccHHHHHHHHHcC
Confidence 334556666665555543
No 311
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.70 E-value=2.8e+02 Score=25.33 Aligned_cols=19 Identities=5% Similarity=0.135 Sum_probs=8.7
Q ss_pred HHHHhccCChHHHHHHHHH
Q 005317 216 LKASADSGALNFGREIHTI 234 (702)
Q Consensus 216 l~~~~~~~~~~~a~~~~~~ 234 (702)
+...+..|+.+-+.-+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3334445555544444433
No 312
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.34 E-value=50 Score=28.77 Aligned_cols=49 Identities=4% Similarity=0.202 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhHHhhCCCCC-hhhHH-----HHHHHHHhcCCHHHHHHHHHhCCC
Q 005317 528 VDLGFHYFNLMSDKYGFVPS-KEHYG-----CMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
.+.|+-+|+.+.+...+..+ ...-. ..+-.|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 67888888888765322211 11111 223456777888888888877665
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.71 E-value=2.2e+02 Score=23.65 Aligned_cols=52 Identities=8% Similarity=0.031 Sum_probs=33.0
Q ss_pred HHHHHHHHchhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC
Q 005317 495 EAIHLFEKVPMVGLRPDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS 547 (702)
Q Consensus 495 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 547 (702)
++.++|..|...|+--.. .-|......+...|++.+|.++|+.-++. +-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 355667777766665544 34555566666677777777777776665 55554
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.30 E-value=3.5e+02 Score=30.34 Aligned_cols=28 Identities=4% Similarity=-0.193 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005317 582 VWSTLLRACMVQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 609 (702)
.|..++..+-+.+-++.+.+..+.+++.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 4555566666666666666666666654
No 315
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.03 E-value=2.7e+02 Score=24.04 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=40.8
Q ss_pred HHHHHHH---cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCc-----HHHHHHHHHHHHHhCCC
Q 005317 381 TIIGGYS---QGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAI-----LEQGKQIHAHVMSIGLE 443 (702)
Q Consensus 381 ~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 443 (702)
.+|+++. +..+++.|+-++-+|.+.| .|....-..++.+.-..|. ...|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3555554 4689999999999999999 7766666666666655553 33344445555555543
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.85 E-value=1.1e+02 Score=31.28 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh--hhH-HHHHHHHHhcCCHHHHHHHHHhCCC
Q 005317 513 VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSK--EHY-GCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
..++.+++.|...+.++.|..+..+..--..-.++. ..| -.++..+.-.+++.+|.+.+..+..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 568889999999999999999999873100001111 122 2456778889999999999988765
No 317
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.60 E-value=2.4e+02 Score=25.19 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=13.4
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 005317 282 ITSYVQMGEEENAFDAFVRMQ 302 (702)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~ 302 (702)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 456666667777766666554
No 318
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=29.52 E-value=51 Score=21.94 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 005317 600 RHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEP 649 (702)
Q Consensus 600 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 649 (702)
++..+.+.++.| +......-.-+-...|+.+.|+..+-.|...+.+++.
T Consensus 10 ee~l~~L~emFP-~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFP-NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCS-SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 344555566677 3333333333335567888888888777766655543
No 319
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.05 E-value=1.5e+02 Score=20.95 Aligned_cols=61 Identities=5% Similarity=0.044 Sum_probs=37.3
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCC
Q 005317 198 AEMWRSKEQGDSYTFAIVLKASADSG-ALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGK 259 (702)
Q Consensus 198 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 259 (702)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556677766544 34555555544 455677788887777655566666666666666554
No 320
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=28.49 E-value=2.7e+02 Score=23.49 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=40.4
Q ss_pred hcCCChhHHHHHhccCCC-CC-cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHh-ccCChHH
Q 005317 154 TKLGKIELGCRVFDEMPL-RN-VVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYT---FAIVLKASA-DSGALNF 227 (702)
Q Consensus 154 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~-~~~~~~~ 227 (702)
++.|+++....+++.-.. .+ ..-+ +.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++. ...+...
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~ 92 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG 92 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhh
Confidence 344666665555543221 11 1112 233444455655555566666666666555432 222222221 1223333
Q ss_pred HHHHHHHHHHhCCCCc
Q 005317 228 GREIHTIMLKRGFDVV 243 (702)
Q Consensus 228 a~~~~~~~~~~~~~~~ 243 (702)
..++.+.+++.|..++
T Consensus 93 ~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 93 TTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHCCCCCC
Confidence 4455555666665444
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.25 E-value=2.6e+02 Score=31.33 Aligned_cols=52 Identities=10% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHHHccCChHHHHHHhhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhh
Q 005317 47 QLKHLVKSGYLHDARKMFDTMTQRDEISWTTLISGYVKAMDSIEALALFSRVW 99 (702)
Q Consensus 47 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 99 (702)
++..+...|..+-|.++....+.....+| .+..+|...|++++|...|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~y-v~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVY-LKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHH-HHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHh
Confidence 66777788888888877766665333333 46667889999999999998863
No 322
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.31 E-value=1.5e+02 Score=24.63 Aligned_cols=71 Identities=11% Similarity=-0.005 Sum_probs=48.4
Q ss_pred hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHh--cCCCchhHHHHHHHhhhcCCCh
Q 005317 88 SIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKT--GFVNSVFVGSALLDMYTKLGKI 159 (702)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~ 159 (702)
.+.+++-+.+..+..|+++.+ .-..++..+...+..-.|.++++.+.+. +...+..|--.-+..+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 455565565555555777754 4556667777777888899999999887 7666666555566677777654
No 323
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.99 E-value=1.3e+02 Score=26.95 Aligned_cols=27 Identities=7% Similarity=-0.155 Sum_probs=17.4
Q ss_pred HHhhccCCchhhhHHHHHHHHhcCCCc
Q 005317 116 KACALNVNVNYGESLHGYTVKTGFVNS 142 (702)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 142 (702)
...++.|+.+..+.+++.+.+.|..++
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 344556777777777777777665554
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.30 E-value=2.9e+02 Score=26.25 Aligned_cols=61 Identities=8% Similarity=0.107 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCh---hhHHHHHHHHHcCC-ChHHHHHHHHHHHHCCCCC
Q 005317 349 NSIMAMYSKCGQLTSTSIVFHGMIRRDI---ISWSTIIGGYSQGG-YEEEAFEYLALMRREGPRP 409 (702)
Q Consensus 349 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p 409 (702)
..++.-|...|+.++|...++++..|.- .....+..++-+.. ..+.+..++..+.+.|+-+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 4577778888899999999988876631 22222333332221 2344566777776665443
No 325
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.98 E-value=4.1e+02 Score=24.83 Aligned_cols=216 Identities=8% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHccc
Q 005317 348 ANSIMAMYSKCGQLTSTSIVFHGMIRR---DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNM 424 (702)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 424 (702)
...++.-|...|+.++|...++++..| .......+-.++-+...-.+....+-.-...++-+.......+...+...
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q ss_pred Cc--------HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC--HHHHHHHHhhCCCCCH-----------------
Q 005317 425 AI--------LEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGS--IKEASQIFYETESDDI----------------- 477 (702)
Q Consensus 425 ~~--------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~----------------- 477 (702)
.+ ++..-.++..++..++-|........-......|. +..|..++..=.....
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcH--HHHHHHHHHhHHhhCCCCChhhHHHH
Q 005317 478 -VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLV--DLGFHYFNLMSDKYGFVPSKEHYGCM 554 (702)
Q Consensus 478 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~--~~A~~~~~~~~~~~~~~p~~~~~~~l 554 (702)
.....++.-|...|+.++|.+.++++....+.+ ......+..++.+.++. +....++..+.+. |+-+.......+
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~~q~~~Gf 243 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHH
Q ss_pred HHHHHhcCCHH
Q 005317 555 IDLLCRAGRLS 565 (702)
Q Consensus 555 ~~~~~~~g~~~ 565 (702)
...+....+..
T Consensus 244 ~~vl~~l~Dl~ 254 (307)
T 2zu6_B 244 ERIYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccHhh
No 326
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.96 E-value=4.2e+02 Score=24.93 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005317 580 DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
..++++.+..+.+.+++..|....+++++++|. ....++|.+++....+.
T Consensus 207 ~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~--------------~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 207 TNALQVAMSQHFKHKNFLQASYFAGEFLKIISS--------------GPRAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS--------------SHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHHhcC
Confidence 447778888899999999999999999999984 22345677777776553
No 327
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=25.96 E-value=1.3e+02 Score=24.11 Aligned_cols=7 Identities=14% Similarity=0.069 Sum_probs=2.5
Q ss_pred CChHHHH
Q 005317 258 GKLDYSL 264 (702)
Q Consensus 258 g~~~~A~ 264 (702)
|+.+-+.
T Consensus 112 ~~~~~v~ 118 (156)
T 1bd8_A 112 GHTAVVS 118 (156)
T ss_dssp TCHHHHH
T ss_pred ChHHHHH
Confidence 3333333
No 328
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.64 E-value=2.2e+02 Score=24.87 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=24.2
Q ss_pred hHHHHHHHHHchhCCCCCCHH--HHHHHH-----HHHhccCcHHHHHHHHHHhH
Q 005317 493 SQEAIHLFEKVPMVGLRPDSV--TFMGVL-----TACSHAGLVDLGFHYFNLMS 539 (702)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~~~--~~~~ll-----~~~~~~g~~~~A~~~~~~~~ 539 (702)
.+.|+.+|+.+....--|+.. ....++ ..|.+.|.+++|.+++++..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 456677776666432111111 122222 23566677777777777665
No 329
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.54 E-value=3.3e+02 Score=23.55 Aligned_cols=16 Identities=6% Similarity=0.046 Sum_probs=9.0
Q ss_pred hhcCCChhHHHHHhcc
Q 005317 153 YTKLGKIELGCRVFDE 168 (702)
Q Consensus 153 ~~~~g~~~~A~~~~~~ 168 (702)
.++.|+.+.+..+++.
T Consensus 10 A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 10 AAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHh
Confidence 3455666666666654
No 330
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.53 E-value=2.3e+02 Score=24.54 Aligned_cols=15 Identities=13% Similarity=-0.062 Sum_probs=7.2
Q ss_pred hhcCCChhHHHHHhc
Q 005317 153 YTKLGKIELGCRVFD 167 (702)
Q Consensus 153 ~~~~g~~~~A~~~~~ 167 (702)
.++.|+++....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 334455555555444
No 331
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.55 E-value=2.1e+02 Score=25.03 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCCchhH--HHHHHHHhhhCCChHHHHHHHhccCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005317 231 IHTIMLKRGFDVVSFV--ANSLATMYSKCGKLDYSLRLFERMSTR---DVISWTTIITSYVQMGEEENAFDAFVRMQE 303 (702)
Q Consensus 231 ~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (702)
+.+.+.+.|..++... -.+-+...++.|+.+-+.-+++.-..+ |..-. +-+...+..|+...++++.+.+.+
T Consensus 159 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~-t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE-TPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC-CHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCC-CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445554443221 122344455566766666666543322 21112 223334456667777777776654
No 332
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.03 E-value=3.6e+02 Score=23.48 Aligned_cols=89 Identities=12% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHcC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCc-----HHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005317 382 IIGGYSQG---GYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAI-----LEQGKQIHAHVMSIGLERTAMIKSALI 453 (702)
Q Consensus 382 li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li 453 (702)
+|+++.|+ .+++.|+-++-+|++.|-.|....-..++.+.-..|. ...|...++.....|.+--.....-.+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHhh
Q 005317 454 NMYSKCGSIKEASQIFYE 471 (702)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~ 471 (702)
-.++.+-+-..+ ..++.
T Consensus 118 iyLA~APKSNs~-~A~~~ 134 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFK 134 (213)
T ss_dssp HHHHHSCCCCGG-GHHHH
T ss_pred HHHHcCCccHHH-HHHHH
No 333
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.33 E-value=58 Score=32.70 Aligned_cols=93 Identities=10% Similarity=0.046 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHhhccCccccccccccCcccCchhhhhHHHHHHccCChHHHHHHhhcCCCC------------CcchH
Q 005317 8 HRVGRLFASSAIACTERRPLLLFQGTQLPVYVSTPEVNSQLKHLVKSGYLHDARKMFDTMTQR------------DEISW 75 (702)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~~~ 75 (702)
+...|++.-.+..|..-|++-....++..-.....+.|.|++.|.|.|++.-+..++..+... ...+|
T Consensus 143 e~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y 222 (455)
T 3t5v_B 143 SHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEY 222 (455)
T ss_dssp HHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEee
Confidence 456788899999999888853222211122334567899999999999999999999875321 12233
Q ss_pred HH-HHHHHHcCCChhHHHHHHHHhhh
Q 005317 76 TT-LISGYVKAMDSIEALALFSRVWV 100 (702)
Q Consensus 76 ~~-ll~~~~~~~~~~~a~~~~~~~~~ 100 (702)
.- +.+.+..++++.+|.+.|.+..+
T Consensus 223 ~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 223 RYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 32 33345668888888887777653
No 334
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.13 E-value=2.7e+02 Score=23.93 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHHH---hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 005317 281 IITSYV---QMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLA 324 (702)
Q Consensus 281 li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 324 (702)
+|+++. +-.+++.|+-.+.+|.+.|-.|....-..++.+.-..|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 445544 45889999999999999987666555555555554444
No 335
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.02 E-value=1.9e+02 Score=27.65 Aligned_cols=59 Identities=3% Similarity=0.070 Sum_probs=33.9
Q ss_pred HHHHHHhhhCCChHHHHHHHhccCCCCc---chHHHHHHHHHhc-CChhHHHHHHHHHHHCCC
Q 005317 248 NSLATMYSKCGKLDYSLRLFERMSTRDV---ISWTTIITSYVQM-GEEENAFDAFVRMQESDV 306 (702)
Q Consensus 248 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~ 306 (702)
..++.-|...|+.++|.+.++++..|.- .....+..++-+. ...+.+..++..+.+.|+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 5577778888888888888888876531 1122222222221 123455666666666654
No 336
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.40 E-value=58 Score=21.67 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=20.1
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCHH
Q 005317 85 AMDSIEALALFSRVWVEPQMNMDPF 109 (702)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (702)
.-+++.|+..|.++...+.++|++.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4589999999999987767777653
No 337
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.09 E-value=3.3e+02 Score=22.56 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=38.3
Q ss_pred HhcCCHHHHHHHHHhCCC---CC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHHh
Q 005317 559 CRAGRLSDAENMIENMPH---QK--DDVVWSTLLR-A-----CMVQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~---~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~~ 609 (702)
...|++=+|-++++..-. .+ ....|..|++ . ..+.|+...|..++.+++..
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344899999999888765 24 4557777777 2 23789999999999999873
No 338
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.07 E-value=1.1e+02 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 005317 616 THITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
.+...+..+.+.|+|++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3445566667777777776654443
No 339
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.04 E-value=2.8e+02 Score=23.90 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHHHH---cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccC
Q 005317 382 IIGGYS---QGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMA 425 (702)
Q Consensus 382 li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 425 (702)
+|+++. +..+++.|+-.+-+|++.|-.|....-..++.+.-..|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 555554 46899999999999999998887766666666654444
No 340
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.88 E-value=3e+02 Score=23.72 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=28.6
Q ss_pred hHHHHHHhhcCCCCCcch--------HHHHHHHHHcCCChhHHHHHHHHhhhC
Q 005317 57 LHDARKMFDTMTQRDEIS--------WTTLISGYVKAMDSIEALALFSRVWVE 101 (702)
Q Consensus 57 ~~~A~~~~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~~ 101 (702)
++.|+.+++.+.+.-... --..+..|.+.|.+++|.++|++...+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 467777887776531111 122344688899999999999987644
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.20 E-value=2.1e+02 Score=23.03 Aligned_cols=37 Identities=8% Similarity=-0.128 Sum_probs=16.5
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC
Q 005317 526 GLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGR 563 (702)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 563 (702)
+..-.|.++++.+.+. +-..+..|...-++.+...|-
T Consensus 35 ~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 35 MAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 3344455555555443 323333333334444454443
No 342
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.07 E-value=93 Score=27.94 Aligned_cols=28 Identities=11% Similarity=-0.185 Sum_probs=17.7
Q ss_pred HHHhhccCCchhhhHHHHHHHHhcCCCc
Q 005317 115 LKACALNVNVNYGESLHGYTVKTGFVNS 142 (702)
Q Consensus 115 l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 142 (702)
+...+..|+.+..+.+++.+++.|..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 4445566777777777777776665443
No 343
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.95 E-value=1.6e+02 Score=23.80 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=29.8
Q ss_pred HHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCCh
Q 005317 200 MWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKL 260 (702)
Q Consensus 200 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 260 (702)
+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 13 l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44555555544332 2333333344455666666666555444554444455555555543
No 344
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.89 E-value=4.9e+02 Score=25.03 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 005317 450 SALINMYSKCGSIKEASQIFYETESDD 476 (702)
Q Consensus 450 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 476 (702)
..++.-|...|+.++|.+.++++..|+
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~ 42 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPK 42 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCch
Confidence 456777777778888888887777663
No 345
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.84 E-value=2.5e+02 Score=20.46 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhH
Q 005317 229 REIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEEN 293 (702)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 293 (702)
..+++.+.+.|+-.. .-+..+. ......++|.++++.++.+...+|..++.++...+...-
T Consensus 25 ~~lld~L~~~~vlt~-~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 25 SYIMDHMISDGFLTI-SEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHTSSCH-HHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCCCH-HHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 345666666663322 2222222 234667888888888888888888888888777665443
No 346
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.82 E-value=1e+02 Score=22.88 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=26.6
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHH
Q 005317 460 GSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEA 496 (702)
Q Consensus 460 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (702)
...+.|.++++.++..+..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4567777777777777777788888877666665544
No 347
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=20.78 E-value=3.5e+02 Score=25.75 Aligned_cols=79 Identities=10% Similarity=-0.000 Sum_probs=52.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCCh-hHH--HHHHHHH----HhcCCHHHHHHHH
Q 005317 397 EYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTA-MIK--SALINMY----SKCGSIKEASQIF 469 (702)
Q Consensus 397 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~--~~li~~~----~~~g~~~~A~~~~ 469 (702)
++++.+.+.|+.|...++..++..+.+.=.++.+..+|+.+...|..... ..+ -+++..+ ....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 35556667788888888888888888888888889999988877654332 222 2222221 2346777777777
Q ss_pred hhCCCC
Q 005317 470 YETESD 475 (702)
Q Consensus 470 ~~~~~~ 475 (702)
+.++..
T Consensus 310 ~~~p~~ 315 (345)
T 2qfz_A 310 QNLPTA 315 (345)
T ss_dssp TSCSCT
T ss_pred HcCCCc
Confidence 776654
No 348
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.72 E-value=2.3e+02 Score=22.54 Aligned_cols=16 Identities=13% Similarity=0.029 Sum_probs=7.4
Q ss_pred HHhCCChHHHHHHHHH
Q 005317 184 LVRAGHNKEGLIYFAE 199 (702)
Q Consensus 184 ~~~~~~~~~a~~~~~~ 199 (702)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555554444443
No 349
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.70 E-value=2.2e+02 Score=21.99 Aligned_cols=68 Identities=10% Similarity=0.087 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 005317 492 YSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLS 565 (702)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 565 (702)
.+.+|+.-+++.... ++|......++..+... ++.++.+.+...+..|+ .+.++...+....+.|-.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~ 70 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLP 70 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCC
Confidence 345566666665543 45666666666555433 55566666665554466 3556666666666666543
No 350
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.12 E-value=1.7e+02 Score=27.97 Aligned_cols=14 Identities=0% Similarity=0.076 Sum_probs=6.7
Q ss_pred HhcCCHHHHHHHHh
Q 005317 356 SKCGQLTSTSIVFH 369 (702)
Q Consensus 356 ~~~g~~~~a~~~~~ 369 (702)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455554444444
Done!