Query 005319
Match_columns 702
No_of_seqs 261 out of 1510
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 21:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 8E-182 2E-186 1552.7 61.4 687 14-702 4-693 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 5E-142 1E-146 1180.6 39.1 580 36-671 17-599 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 4E-89 8.6E-94 731.6 19.0 296 45-349 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 3.4E-36 7.3E-41 343.9 9.8 288 39-335 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 6.1E-21 1.3E-25 209.7 13.8 263 60-352 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 3.2E-13 6.9E-18 144.1 16.5 153 39-232 1-159 (298)
7 PRK10150 beta-D-glucuronidase; 99.4 4.7E-11 1E-15 139.4 24.8 159 37-230 276-448 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.3 3.7E-11 8.1E-16 147.1 18.1 185 38-266 319-514 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.2 2.2E-10 4.8E-15 140.3 18.2 148 38-230 335-488 (1027)
10 COG3250 LacZ Beta-galactosidas 99.0 4.7E-09 1E-13 124.7 16.0 120 37-198 284-409 (808)
11 PF00150 Cellulase: Cellulase 99.0 1.2E-08 2.5E-13 106.6 15.7 160 48-229 3-170 (281)
12 PF13364 BetaGal_dom4_5: Beta- 98.5 7.6E-07 1.6E-11 81.9 9.0 84 468-558 24-110 (111)
13 PF03198 Glyco_hydro_72: Gluca 98.3 7.4E-06 1.6E-10 87.1 13.2 157 33-227 5-179 (314)
14 smart00633 Glyco_10 Glycosyl h 98.0 1.2E-05 2.6E-10 84.3 8.4 117 91-232 3-126 (254)
15 PF02837 Glyco_hydro_2_N: Glyc 98.0 3.8E-05 8.2E-10 74.7 10.3 99 475-579 64-164 (167)
16 TIGR03356 BGL beta-galactosida 97.9 2.3E-05 5E-10 88.3 8.6 97 68-176 54-151 (427)
17 PLN02161 beta-amylase 97.7 0.00011 2.5E-09 82.2 9.4 117 67-192 116-262 (531)
18 PF13204 DUF4038: Protein of u 97.6 0.00019 4.1E-09 76.9 9.2 225 43-297 2-274 (289)
19 PLN00197 beta-amylase; Provisi 97.6 0.00023 5E-09 80.4 9.0 117 66-193 125-273 (573)
20 PLN02705 beta-amylase 97.6 0.00021 4.5E-09 81.3 8.5 118 66-193 266-415 (681)
21 PF13364 BetaGal_dom4_5: Beta- 97.5 9.6E-05 2.1E-09 68.0 4.4 45 627-671 34-81 (111)
22 PLN02803 beta-amylase 97.5 0.00029 6.3E-09 79.4 8.9 116 67-193 106-253 (548)
23 PLN02801 beta-amylase 97.5 0.00028 6E-09 79.2 8.7 118 66-193 35-184 (517)
24 PLN02905 beta-amylase 97.5 0.00028 6.1E-09 80.5 8.7 79 68-152 286-376 (702)
25 PF01373 Glyco_hydro_14: Glyco 97.3 0.00027 5.9E-09 77.8 6.0 114 69-192 17-152 (402)
26 PF00232 Glyco_hydro_1: Glycos 97.2 0.00037 8E-09 79.2 5.2 97 68-176 58-156 (455)
27 PF00331 Glyco_hydro_10: Glyco 97.1 0.00059 1.3E-08 74.1 4.9 158 55-233 11-180 (320)
28 PRK15014 6-phospho-beta-glucos 97.0 0.0017 3.6E-08 74.3 8.3 95 69-175 70-167 (477)
29 PRK09852 cryptic 6-phospho-bet 96.9 0.00071 1.5E-08 77.2 4.2 95 69-175 72-169 (474)
30 PF07745 Glyco_hydro_53: Glyco 96.9 0.0032 7E-08 68.6 8.9 105 71-197 27-136 (332)
31 PF14488 DUF4434: Domain of un 96.9 0.017 3.6E-07 57.0 13.1 137 63-229 15-159 (166)
32 PLN02998 beta-glucosidase 96.9 0.00097 2.1E-08 76.5 4.9 95 69-175 83-179 (497)
33 COG3693 XynA Beta-1,4-xylanase 96.9 0.0057 1.2E-07 65.5 10.1 133 77-232 55-194 (345)
34 PLN02814 beta-glucosidase 96.8 0.0012 2.7E-08 75.8 4.8 95 69-175 78-174 (504)
35 PRK13511 6-phospho-beta-galact 96.8 0.0036 7.9E-08 71.5 8.5 95 69-175 55-150 (469)
36 TIGR01233 lacG 6-phospho-beta- 96.7 0.0045 9.7E-08 70.7 8.6 97 68-176 53-150 (467)
37 PRK09593 arb 6-phospho-beta-gl 96.7 0.0018 3.9E-08 74.1 5.3 96 68-175 73-171 (478)
38 PLN02849 beta-glucosidase 96.6 0.002 4.2E-08 74.2 4.9 95 69-175 80-176 (503)
39 PRK09589 celA 6-phospho-beta-g 96.6 0.002 4.3E-08 73.7 4.8 96 68-175 67-165 (476)
40 COG2730 BglC Endoglucanase [Ca 96.6 0.0072 1.6E-07 67.8 8.7 115 66-198 66-193 (407)
41 COG3867 Arabinogalactan endo-1 96.0 0.039 8.4E-07 58.5 9.6 115 70-197 65-182 (403)
42 PRK10150 beta-D-glucuronidase; 95.8 0.043 9.4E-07 64.7 10.7 100 476-581 62-179 (604)
43 COG2723 BglB Beta-glucosidase/ 95.8 0.011 2.4E-07 66.5 5.0 95 69-175 60-157 (460)
44 KOG2230 Predicted beta-mannosi 95.7 0.12 2.7E-06 58.8 12.9 149 44-232 328-494 (867)
45 PF14871 GHL6: Hypothetical gl 95.1 0.14 3E-06 48.8 9.3 97 72-173 4-122 (132)
46 PRK10340 ebgA cryptic beta-D-g 94.8 0.1 2.2E-06 65.2 9.6 95 479-582 109-207 (1021)
47 PRK09525 lacZ beta-D-galactosi 94.0 0.2 4.2E-06 62.7 9.6 94 479-581 120-218 (1027)
48 smart00812 Alpha_L_fucos Alpha 92.8 19 0.00041 40.4 22.0 244 63-357 79-337 (384)
49 PF02638 DUF187: Glycosyl hydr 92.6 0.45 9.7E-06 51.7 8.6 120 66-194 17-162 (311)
50 PRK09936 hypothetical protein; 92.5 0.42 9E-06 51.0 7.8 58 63-126 33-91 (296)
51 PF02055 Glyco_hydro_30: O-Gly 92.4 1.1 2.4E-05 51.8 11.9 321 51-400 74-471 (496)
52 TIGR01515 branching_enzym alph 92.3 2 4.3E-05 51.1 14.2 56 72-128 160-227 (613)
53 COG3934 Endo-beta-mannanase [C 92.3 0.11 2.4E-06 58.3 3.5 156 45-218 3-167 (587)
54 PF02837 Glyco_hydro_2_N: Glyc 91.5 0.22 4.7E-06 48.3 4.2 45 627-671 67-114 (167)
55 smart00642 Aamy Alpha-amylase 91.4 0.52 1.1E-05 46.4 6.8 65 70-134 21-97 (166)
56 COG1649 Uncharacterized protei 91.4 1.1 2.4E-05 50.3 10.1 122 66-197 62-210 (418)
57 PRK14706 glycogen branching en 90.5 5.2 0.00011 47.8 15.1 51 74-127 174-237 (639)
58 PLN02447 1,4-alpha-glucan-bran 90.0 6.5 0.00014 47.7 15.4 62 68-129 251-322 (758)
59 PF05913 DUF871: Bacterial pro 90.0 0.48 1E-05 52.4 5.6 73 56-134 2-74 (357)
60 PRK05402 glycogen branching en 90.0 3.9 8.5E-05 49.6 13.8 54 74-127 272-335 (726)
61 PRK12568 glycogen branching en 89.8 5.8 0.00013 47.9 14.7 59 73-133 275-345 (730)
62 PRK14705 glycogen branching en 87.7 9.6 0.00021 48.6 15.2 55 73-127 771-835 (1224)
63 PRK09441 cytoplasmic alpha-amy 85.4 1.4 3.1E-05 50.6 6.0 60 68-127 19-101 (479)
64 PF00128 Alpha-amylase: Alpha 85.2 0.98 2.1E-05 47.3 4.3 57 71-127 7-72 (316)
65 PF01229 Glyco_hydro_39: Glyco 85.1 2.5 5.3E-05 48.8 7.8 65 58-128 29-105 (486)
66 COG0296 GlgB 1,4-alpha-glucan 85.0 1.8 3.9E-05 51.1 6.6 55 68-126 165-233 (628)
67 TIGR00542 hxl6Piso_put hexulos 83.9 15 0.00032 38.7 12.6 98 67-190 15-113 (279)
68 PF14307 Glyco_tran_WbsX: Glyc 80.6 18 0.00039 39.8 12.0 138 65-231 55-197 (345)
69 KOG0626 Beta-glucosidase, lact 80.0 3.4 7.5E-05 47.6 6.3 113 69-191 92-208 (524)
70 TIGR02402 trehalose_TreZ malto 79.7 3.5 7.5E-05 48.3 6.4 54 71-127 114-180 (542)
71 cd00019 AP2Ec AP endonuclease 79.6 19 0.00042 37.8 11.5 54 68-125 10-64 (279)
72 PRK13210 putative L-xylulose 5 77.6 24 0.00051 37.0 11.5 132 68-225 16-149 (284)
73 TIGR02403 trehalose_treC alpha 76.7 3.9 8.4E-05 47.9 5.6 59 69-129 28-97 (543)
74 PRK12313 glycogen branching en 76.1 5.3 0.00011 47.6 6.7 54 74-127 177-240 (633)
75 PF11324 DUF3126: Protein of u 75.9 8 0.00017 32.1 5.6 30 508-537 25-56 (63)
76 PF13199 Glyco_hydro_66: Glyco 75.9 4.9 0.00011 47.1 6.1 78 68-145 118-210 (559)
77 PRK01060 endonuclease IV; Prov 75.8 71 0.0015 33.5 14.5 83 70-175 14-99 (281)
78 PLN02960 alpha-amylase 75.7 5.7 0.00012 48.6 6.8 57 71-127 420-486 (897)
79 TIGR02104 pulA_typeI pullulana 75.5 5 0.00011 47.6 6.2 55 72-127 168-249 (605)
80 PF13200 DUF4015: Putative gly 75.2 11 0.00024 41.2 8.2 112 66-178 11-137 (316)
81 COG3589 Uncharacterized conser 75.0 8 0.00017 42.2 6.9 72 56-134 4-76 (360)
82 TIGR01531 glyc_debranch glycog 74.2 10 0.00022 48.7 8.5 91 66-162 130-235 (1464)
83 TIGR02631 xylA_Arthro xylose i 73.1 48 0.001 37.1 12.9 91 66-175 30-125 (382)
84 PRK10785 maltodextrin glucosid 72.6 7.7 0.00017 46.0 6.8 57 71-127 182-246 (598)
85 PRK10933 trehalose-6-phosphate 71.9 8.1 0.00018 45.4 6.7 55 70-127 35-101 (551)
86 PF02679 ComA: (2R)-phospho-3- 71.6 6.2 0.00013 41.5 5.0 52 67-128 83-134 (244)
87 PRK09505 malS alpha-amylase; R 71.5 8.2 0.00018 46.5 6.7 59 70-128 232-313 (683)
88 TIGR02456 treS_nterm trehalose 70.8 6.1 0.00013 46.2 5.4 55 69-126 29-95 (539)
89 KOG0496 Beta-galactosidase [Ca 70.2 2.1 4.7E-05 50.2 1.4 30 318-347 324-353 (649)
90 PF03659 Glyco_hydro_71: Glyco 69.9 15 0.00032 41.3 7.9 53 66-127 15-67 (386)
91 PRK09856 fructoselysine 3-epim 69.2 71 0.0015 33.3 12.6 52 68-124 13-64 (275)
92 PF01261 AP_endonuc_2: Xylose 68.2 11 0.00024 36.9 5.9 124 74-224 1-127 (213)
93 PF01791 DeoC: DeoC/LacD famil 67.2 2.4 5.2E-05 43.9 0.9 53 71-126 79-131 (236)
94 TIGR02401 trehalose_TreY malto 65.4 14 0.0003 45.3 6.9 65 66-130 14-88 (825)
95 cd06565 GH20_GcnA-like Glycosy 64.7 36 0.00078 36.8 9.4 58 66-127 15-80 (301)
96 PF06832 BiPBP_C: Penicillin-B 64.6 12 0.00025 32.7 4.7 49 503-559 35-84 (89)
97 PLN02361 alpha-amylase 64.5 15 0.00033 41.4 6.7 57 71-127 32-96 (401)
98 PRK14582 pgaB outer membrane N 64.5 26 0.00056 42.1 8.9 126 52-196 313-468 (671)
99 cd06593 GH31_xylosidase_YicI Y 64.2 14 0.00029 39.9 6.0 69 65-133 21-92 (308)
100 TIGR03849 arch_ComA phosphosul 64.1 14 0.00031 38.6 5.9 52 68-129 71-122 (237)
101 cd06592 GH31_glucosidase_KIAA1 63.9 52 0.0011 35.5 10.4 69 63-134 25-97 (303)
102 PRK14510 putative bifunctional 63.7 11 0.00024 48.5 5.9 56 72-127 191-267 (1221)
103 TIGR02100 glgX_debranch glycog 63.1 11 0.00025 45.3 5.7 55 73-127 189-265 (688)
104 cd04908 ACT_Bt0572_1 N-termina 62.9 25 0.00054 28.6 6.1 55 67-125 12-66 (66)
105 TIGR02103 pullul_strch alpha-1 62.7 14 0.00029 45.9 6.2 21 107-127 404-424 (898)
106 smart00518 AP2Ec AP endonuclea 61.9 65 0.0014 33.6 10.6 82 70-175 12-94 (273)
107 PRK13398 3-deoxy-7-phosphohept 61.7 45 0.00098 35.5 9.3 84 36-127 13-98 (266)
108 PF02065 Melibiase: Melibiase; 61.6 80 0.0017 35.7 11.6 88 62-149 52-148 (394)
109 PRK14511 maltooligosyl trehalo 60.2 20 0.00043 44.3 7.0 64 66-132 18-94 (879)
110 PRK14507 putative bifunctional 59.9 18 0.0004 47.6 6.9 61 66-129 756-829 (1693)
111 PRK13209 L-xylulose 5-phosphat 59.3 72 0.0016 33.5 10.4 97 68-190 21-118 (283)
112 cd02742 GH20_hexosaminidase Be 58.9 31 0.00067 37.2 7.6 59 66-127 14-92 (303)
113 PRK12677 xylose isomerase; Pro 58.9 91 0.002 35.0 11.5 90 68-175 31-124 (384)
114 PLN02877 alpha-amylase/limit d 58.1 19 0.00042 44.9 6.4 21 107-127 466-486 (970)
115 PRK08673 3-deoxy-7-phosphohept 57.9 42 0.00091 37.0 8.4 83 36-127 79-164 (335)
116 cd06589 GH31 The enzymes of gl 57.4 1.7E+02 0.0036 30.8 12.8 65 66-131 22-90 (265)
117 COG5520 O-Glycosyl hydrolase [ 56.8 2.3E+02 0.005 31.7 13.5 86 116-222 111-206 (433)
118 COG5309 Exo-beta-1,3-glucanase 56.6 1.3E+02 0.0029 32.2 11.3 119 67-233 62-180 (305)
119 PRK03705 glycogen debranching 56.3 19 0.0004 43.4 5.8 55 73-127 184-262 (658)
120 PF08531 Bac_rhamnosid_N: Alph 54.6 79 0.0017 31.2 9.1 56 502-558 6-68 (172)
121 COG1306 Uncharacterized conser 54.1 26 0.00056 37.8 5.7 62 66-127 75-144 (400)
122 TIGR02102 pullulan_Gpos pullul 53.6 23 0.00049 45.0 6.1 21 107-127 555-575 (1111)
123 COG3623 SgaU Putative L-xylulo 52.9 68 0.0015 33.7 8.3 97 67-192 17-115 (287)
124 PLN00196 alpha-amylase; Provis 51.8 35 0.00076 38.9 6.8 59 71-129 47-114 (428)
125 PF12876 Cellulase-like: Sugar 51.8 21 0.00045 31.1 4.0 48 182-229 6-62 (88)
126 TIGR00419 tim triosephosphate 51.6 30 0.00066 35.4 5.7 44 74-127 74-117 (205)
127 PF08308 PEGA: PEGA domain; I 50.4 15 0.00032 30.5 2.7 22 503-524 3-24 (71)
128 TIGR03234 OH-pyruv-isom hydrox 50.1 29 0.00063 35.9 5.5 43 69-125 15-57 (254)
129 cd06563 GH20_chitobiase-like T 49.5 64 0.0014 35.7 8.3 59 66-127 16-106 (357)
130 PF10566 Glyco_hydro_97: Glyco 49.2 50 0.0011 35.4 7.1 114 66-187 30-159 (273)
131 smart00481 POLIIIAc DNA polyme 48.7 54 0.0012 26.7 5.8 45 69-126 16-60 (67)
132 cd00311 TIM Triosephosphate is 48.4 38 0.00082 35.6 6.0 49 74-128 77-125 (242)
133 cd06562 GH20_HexA_HexB-like Be 47.5 72 0.0016 35.2 8.3 62 66-127 16-90 (348)
134 cd06547 GH85_ENGase Endo-beta- 46.6 55 0.0012 36.1 7.2 105 83-221 31-138 (339)
135 PF07691 PA14: PA14 domain; I 46.2 99 0.0021 28.6 8.0 71 480-558 47-123 (145)
136 PRK09856 fructoselysine 3-epim 46.1 29 0.00062 36.3 4.8 55 69-127 91-149 (275)
137 PF04914 DltD_C: DltD C-termin 42.5 54 0.0012 31.2 5.5 52 107-176 36-87 (130)
138 PLN02784 alpha-amylase 42.1 57 0.0012 40.3 6.8 57 71-127 524-588 (894)
139 COG0366 AmyA Glycosidases [Car 41.7 35 0.00076 38.6 5.0 56 72-127 33-97 (505)
140 PRK09875 putative hydrolase; P 41.6 1.4E+02 0.003 32.3 9.2 89 38-146 7-95 (292)
141 cd06591 GH31_xylosidase_XylS X 41.2 47 0.001 36.1 5.6 66 66-132 22-91 (319)
142 PRK00042 tpiA triosephosphate 40.8 58 0.0013 34.4 6.0 50 73-128 78-127 (250)
143 PRK14566 triosephosphate isome 40.6 79 0.0017 33.7 6.9 49 74-128 88-136 (260)
144 PRK12858 tagatose 1,6-diphosph 40.5 41 0.00089 37.1 5.0 62 64-127 102-163 (340)
145 PF01261 AP_endonuc_2: Xylose 40.4 32 0.0007 33.6 3.9 63 67-130 70-135 (213)
146 cd06599 GH31_glycosidase_Aec37 39.8 65 0.0014 35.0 6.4 65 68-132 29-98 (317)
147 TIGR02455 TreS_stutzeri trehal 39.3 83 0.0018 37.7 7.4 75 66-144 76-175 (688)
148 cd06416 GH25_Lys1-like Lys-1 i 39.2 67 0.0014 32.2 6.0 89 56-147 54-157 (196)
149 cd06545 GH18_3CO4_chitinase Th 38.9 1.4E+02 0.003 31.1 8.5 74 98-197 36-110 (253)
150 PRK13210 putative L-xylulose 5 38.8 47 0.001 34.8 5.0 60 68-128 94-154 (284)
151 cd06418 GH25_BacA-like BacA is 38.6 2E+02 0.0042 29.6 9.3 90 66-177 50-140 (212)
152 PF07488 Glyco_hydro_67M: Glyc 38.1 2.7E+02 0.0058 30.5 10.3 134 66-222 55-188 (328)
153 PF14587 Glyco_hydr_30_2: O-Gl 38.0 2.4E+02 0.0052 31.8 10.4 122 96-232 93-227 (384)
154 cd06602 GH31_MGAM_SI_GAA This 37.7 59 0.0013 35.7 5.7 74 60-134 13-93 (339)
155 KOG2024 Beta-Glucuronidase GUS 37.7 49 0.0011 35.2 4.7 47 475-522 84-130 (297)
156 COG3915 Uncharacterized protei 37.3 1.3E+02 0.0029 28.9 7.1 47 73-125 39-87 (155)
157 PRK09997 hydroxypyruvate isome 37.3 48 0.001 34.5 4.8 60 68-127 85-144 (258)
158 PRK15492 triosephosphate isome 36.8 72 0.0016 33.9 6.0 49 74-128 87-135 (260)
159 KOG0259 Tyrosine aminotransfer 36.4 33 0.00071 38.4 3.3 90 33-126 147-238 (447)
160 PF02228 Gag_p19: Major core p 36.4 18 0.00038 31.3 1.0 36 66-118 20-55 (92)
161 cd06600 GH31_MGAM-like This fa 36.2 62 0.0013 35.2 5.6 73 60-133 13-90 (317)
162 PLN02561 triosephosphate isome 36.1 75 0.0016 33.7 5.9 49 74-128 81-129 (253)
163 COG1523 PulA Type II secretory 36.0 56 0.0012 39.5 5.5 55 73-127 205-285 (697)
164 COG1735 Php Predicted metal-de 35.8 1.5E+02 0.0033 32.3 8.2 159 32-232 11-173 (316)
165 PRK09989 hypothetical protein; 35.8 68 0.0015 33.3 5.6 43 69-125 16-58 (258)
166 cd06603 GH31_GANC_GANAB_alpha 35.6 64 0.0014 35.4 5.6 68 66-134 22-91 (339)
167 PF07755 DUF1611: Protein of u 35.3 27 0.00059 37.9 2.6 60 53-127 35-95 (301)
168 PTZ00333 triosephosphate isome 35.1 81 0.0018 33.4 6.0 49 74-128 82-130 (255)
169 cd06570 GH20_chitobiase-like_1 35.0 1.3E+02 0.0029 32.7 7.8 60 65-127 15-88 (311)
170 cd06568 GH20_SpHex_like A subg 34.9 73 0.0016 34.9 5.9 62 66-127 16-95 (329)
171 KOG0622 Ornithine decarboxylas 34.7 67 0.0015 36.3 5.4 63 65-128 190-253 (448)
172 PRK05265 pyridoxine 5'-phospha 34.5 64 0.0014 33.9 5.0 46 70-133 115-161 (239)
173 TIGR03234 OH-pyruv-isom hydrox 34.1 55 0.0012 33.8 4.6 60 68-127 84-143 (254)
174 PRK09267 flavodoxin FldA; Vali 33.7 3.4E+02 0.0074 26.2 9.9 74 48-124 44-117 (169)
175 PTZ00372 endonuclease 4-like p 33.6 2.4E+02 0.0052 32.2 9.7 85 44-129 149-241 (413)
176 COG3684 LacD Tagatose-1,6-bisp 33.1 46 0.00099 35.4 3.6 52 73-127 116-167 (306)
177 PF14701 hDGE_amylase: glucano 32.7 1.3E+02 0.0028 34.3 7.4 104 66-175 20-143 (423)
178 PRK09997 hydroxypyruvate isome 32.6 80 0.0017 32.8 5.5 42 70-125 17-58 (258)
179 cd06564 GH20_DspB_LnbB-like Gl 32.3 1.6E+02 0.0035 32.0 8.0 59 66-127 15-102 (326)
180 cd06598 GH31_transferase_CtsZ 32.2 1E+02 0.0022 33.5 6.4 67 66-132 22-95 (317)
181 PLN02429 triosephosphate isome 32.2 86 0.0019 34.3 5.7 49 74-128 140-188 (315)
182 TIGR00433 bioB biotin syntheta 32.0 72 0.0016 33.8 5.2 51 71-125 123-176 (296)
183 cd00003 PNPsynthase Pyridoxine 32.0 66 0.0014 33.7 4.6 47 69-133 111-158 (234)
184 PRK14567 triosephosphate isome 31.3 1E+02 0.0022 32.7 6.0 49 74-128 78-126 (253)
185 cd01299 Met_dep_hydrolase_A Me 30.9 1E+02 0.0023 33.1 6.3 61 66-127 118-180 (342)
186 TIGR01698 PUNP purine nucleoti 30.9 68 0.0015 33.7 4.6 40 47-86 47-87 (237)
187 PF01055 Glyco_hydro_31: Glyco 30.4 1E+02 0.0023 34.7 6.4 68 66-134 41-110 (441)
188 COG2876 AroA 3-deoxy-D-arabino 30.0 1.7E+02 0.0036 31.4 7.1 58 66-127 57-116 (286)
189 cd08560 GDPD_EcGlpQ_like_1 Gly 30.0 1.4E+02 0.003 33.3 7.0 53 69-127 246-298 (356)
190 COG0149 TpiA Triosephosphate i 29.9 1.1E+02 0.0024 32.5 5.8 72 50-128 58-129 (251)
191 cd06595 GH31_xylosidase_XylS-l 29.7 1.1E+02 0.0024 32.8 6.1 66 66-131 23-98 (292)
192 cd06604 GH31_glucosidase_II_Ma 29.1 99 0.0022 33.8 5.7 73 60-133 13-90 (339)
193 cd06569 GH20_Sm-chitobiase-lik 29.0 1.2E+02 0.0027 34.7 6.6 73 42-127 6-117 (445)
194 KOG0470 1,4-alpha-glucan branc 28.9 58 0.0013 39.2 4.0 57 71-127 258-331 (757)
195 PF08924 DUF1906: Domain of un 28.9 2E+02 0.0042 27.5 7.0 89 66-176 36-127 (136)
196 TIGR00542 hxl6Piso_put hexulos 28.7 87 0.0019 32.9 5.0 58 69-127 95-153 (279)
197 cd00019 AP2Ec AP endonuclease 27.6 61 0.0013 34.0 3.7 58 68-129 85-145 (279)
198 cd06597 GH31_transferase_CtsY 26.8 1.4E+02 0.0029 33.0 6.3 73 60-132 13-110 (340)
199 cd06601 GH31_lyase_GLase GLase 26.6 3.2E+02 0.0069 30.1 9.1 72 60-132 13-89 (332)
200 cd04882 ACT_Bt0572_2 C-termina 26.5 1.2E+02 0.0026 23.8 4.5 55 67-123 10-64 (65)
201 TIGR00677 fadh2_euk methylenet 26.5 2.1E+02 0.0045 30.8 7.4 108 54-175 130-250 (281)
202 PRK06703 flavodoxin; Provision 26.4 3.5E+02 0.0075 25.6 8.4 103 48-175 46-148 (151)
203 COG3320 Putative dehydrogenase 26.3 36 0.00079 38.0 1.7 36 109-145 175-213 (382)
204 cd00544 CobU Adenosylcobinamid 26.1 5.1E+02 0.011 25.5 9.6 48 163-218 101-148 (169)
205 PRK14565 triosephosphate isome 25.8 1.5E+02 0.0032 31.2 6.0 50 73-128 77-126 (237)
206 PRK13125 trpA tryptophan synth 25.3 1.3E+02 0.0028 31.3 5.6 47 72-129 92-138 (244)
207 cd06831 PLPDE_III_ODC_like_AZI 25.2 1.9E+02 0.0042 32.4 7.3 67 63-141 145-214 (394)
208 PRK12595 bifunctional 3-deoxy- 25.2 3.5E+02 0.0075 30.2 9.1 84 36-127 104-189 (360)
209 PRK12331 oxaloacetate decarbox 25.1 1.6E+02 0.0035 33.8 6.6 55 61-127 89-143 (448)
210 PRK09860 putative alcohol dehy 25.1 1.8E+02 0.004 32.4 7.0 65 51-128 32-96 (383)
211 TIGR00587 nfo apurinic endonuc 25.0 3.8E+02 0.0083 28.2 9.1 83 71-175 14-98 (274)
212 TIGR00559 pdxJ pyridoxine 5'-p 24.5 1.1E+02 0.0023 32.2 4.6 47 69-133 111-158 (237)
213 PF00728 Glyco_hydro_20: Glyco 24.3 1.2E+02 0.0026 32.9 5.3 62 65-126 15-92 (351)
214 PLN02607 1-aminocyclopropane-1 24.1 4.5E+02 0.0097 30.0 10.0 60 63-126 180-239 (447)
215 PF00121 TIM: Triosephosphate 24.1 58 0.0013 34.3 2.6 50 73-128 76-125 (244)
216 PF05706 CDKN3: Cyclin-depende 24.1 2.4E+02 0.0052 28.1 6.7 48 70-127 60-107 (168)
217 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.0 1.9E+02 0.0041 30.7 6.6 49 65-125 88-136 (275)
218 PF14606 Lipase_GDSL_3: GDSL-l 23.4 6.6E+02 0.014 25.3 9.8 124 51-221 2-131 (178)
219 COG1891 Uncharacterized protei 23.4 30 0.00066 34.6 0.4 67 54-126 117-186 (235)
220 PRK08645 bifunctional homocyst 23.3 2.4E+02 0.0052 33.7 7.9 110 51-175 461-578 (612)
221 PRK10076 pyruvate formate lyas 23.2 2.9E+02 0.0063 28.3 7.5 125 67-225 53-209 (213)
222 PRK01060 endonuclease IV; Prov 23.2 4.2E+02 0.0092 27.6 9.0 62 66-128 45-111 (281)
223 KOG3698 Hyaluronoglucosaminida 23.0 3.1E+02 0.0068 32.4 8.1 73 49-129 12-96 (891)
224 PLN03036 glutamine synthetase; 23.0 2.1E+02 0.0046 32.7 7.0 64 70-139 232-307 (432)
225 PLN02389 biotin synthase 22.8 1.2E+02 0.0026 34.1 4.9 47 70-124 177-230 (379)
226 KOG1412 Aspartate aminotransfe 22.8 1.4E+02 0.0031 32.8 5.1 49 65-122 130-178 (410)
227 COG2884 FtsE Predicted ATPase 22.6 78 0.0017 32.5 3.0 31 639-669 36-71 (223)
228 smart00854 PGA_cap Bacterial c 22.6 8E+02 0.017 25.1 10.8 122 71-225 63-208 (239)
229 PF01075 Glyco_transf_9: Glyco 22.5 58 0.0013 33.2 2.3 76 51-129 106-194 (247)
230 PRK04302 triosephosphate isome 22.5 1.6E+02 0.0034 30.2 5.4 59 60-128 62-122 (223)
231 COG1979 Uncharacterized oxidor 22.1 1.5E+02 0.0032 32.8 5.2 47 70-128 47-93 (384)
232 COG1453 Predicted oxidoreducta 22.1 3.2E+02 0.007 30.7 7.8 91 49-175 9-107 (391)
233 TIGR00539 hemN_rel putative ox 22.0 1.2E+02 0.0026 33.5 4.7 48 71-122 100-151 (360)
234 cd04726 KGPDC_HPS 3-Keto-L-gul 22.0 1.9E+02 0.0042 28.5 5.9 45 72-129 68-113 (202)
235 PRK08883 ribulose-phosphate 3- 21.7 1.9E+02 0.0042 29.8 5.9 53 59-128 62-114 (220)
236 cd08185 Fe-ADH1 Iron-containin 21.7 2.2E+02 0.0048 31.6 6.8 67 50-128 25-91 (380)
237 PRK05660 HemN family oxidoredu 21.6 1.2E+02 0.0025 33.9 4.6 49 71-123 107-159 (378)
238 PRK09432 metF 5,10-methylenete 21.6 2.2E+02 0.0048 30.8 6.6 87 73-175 168-265 (296)
239 PF03644 Glyco_hydro_85: Glyco 21.5 1.6E+02 0.0035 32.1 5.5 106 83-220 27-133 (311)
240 PF03740 PdxJ: Pyridoxal phosp 21.5 79 0.0017 33.2 3.0 47 70-134 113-160 (239)
241 COG2179 Predicted hydrolase of 21.4 1.6E+02 0.0035 29.4 4.9 45 73-126 19-68 (175)
242 PLN02231 alanine transaminase 21.3 3E+02 0.0064 32.3 8.0 59 64-126 252-310 (534)
243 COG2515 Acd 1-aminocyclopropan 21.2 9.2E+02 0.02 26.5 10.8 193 107-347 76-271 (323)
244 cd03789 GT1_LPS_heptosyltransf 21.1 1.2E+02 0.0027 31.6 4.4 88 53-145 124-223 (279)
245 PRK08175 aminotransferase; Val 21.1 1.8E+02 0.004 32.1 6.0 54 69-126 149-203 (395)
246 TIGR03551 F420_cofH 7,8-dideme 21.0 82 0.0018 34.6 3.2 49 71-123 141-195 (343)
247 cd07944 DRE_TIM_HOA_like 4-hyd 20.9 1.9E+02 0.004 30.7 5.7 66 63-128 15-81 (266)
248 PRK08227 autoinducer 2 aldolas 20.9 1.1E+02 0.0025 32.6 4.0 48 72-125 98-145 (264)
249 PRK09250 fructose-bisphosphate 20.8 1.3E+02 0.0028 33.4 4.6 48 74-127 152-199 (348)
250 PRK13209 L-xylulose 5-phosphat 20.7 1.4E+02 0.003 31.3 4.8 59 69-128 100-159 (283)
251 TIGR03128 RuMP_HxlA 3-hexulose 20.6 2.2E+02 0.0048 28.4 6.0 41 73-126 68-108 (206)
252 TIGR03700 mena_SCO4494 putativ 20.2 80 0.0017 34.8 2.9 51 70-123 149-204 (351)
253 PF13380 CoA_binding_2: CoA bi 20.2 1.4E+02 0.0031 27.4 4.1 44 65-124 63-106 (116)
254 PF07905 PucR: Purine cataboli 20.1 3.1E+02 0.0067 25.3 6.4 67 48-127 40-106 (123)
255 CHL00200 trpA tryptophan synth 20.0 2E+02 0.0043 30.7 5.7 46 70-129 108-153 (263)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=8.4e-182 Score=1552.67 Aligned_cols=687 Identities=80% Similarity=1.400 Sum_probs=629.0
Q ss_pred cchhHHHHHHHHHhhccc-ccccceeEEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCC
Q 005319 14 GANVKVLMLVLLSFCSWE-ISFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWN 92 (702)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~-~~~~~~~v~~d~~~f~~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~ 92 (702)
|.-|-+|+|.||+++++- +...+.+|+||+++|+|||+|++|+||+|||||+||++|+|+|+||||+|+|||+||||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn 83 (840)
T PLN03059 4 GSLVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWN 83 (840)
T ss_pred cceehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 333444444454444432 5666779999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHH
Q 005319 93 GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVS 172 (702)
Q Consensus 93 ~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~ 172 (702)
+|||+||+|||+|++||++||++|+|+||+|||||||||||||++||+|.||++.|+|++|++|++|+++|++|+++|++
T Consensus 84 ~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~ 163 (840)
T PLN03059 84 GHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVD 163 (840)
T ss_pred ccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCCCceEEeccccCccCccccCCcchHHHHHHHHHHHHhcCCCcceEeecCCCCCCCcccCCCCccccccC
Q 005319 173 MMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFV 252 (702)
Q Consensus 173 ~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (702)
+|+++++++++||||||+|||||||++...++.+|++||+||++++++.|++|||+||++.+++++++++|||.+|+.|.
T Consensus 164 ~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~ 243 (840)
T PLN03059 164 MMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFK 243 (840)
T ss_pred HHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcc
Confidence 99888999999999999999999999877777889999999999999999999999999987788899999999999898
Q ss_pred CCCCCCCccccccccccccccCCCCCCCChHHHHHHHHHHHHhCCceeeeeeeccCCCCCCCCCC-CccccccCCCCCCc
Q 005319 253 PNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGG-FVATSYDYDAPIDE 331 (702)
Q Consensus 253 ~~~p~~P~~~~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~-~~~tSYDYdApl~E 331 (702)
+..+.+|+|+||||+|||++||+++++|+++|++.++++||++|+|++||||||||||||||+|+ +++|||||||||+|
T Consensus 244 ~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E 323 (840)
T PLN03059 244 PNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDE 323 (840)
T ss_pred cCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCcccc
Confidence 87777999999999999999999999999999999999999999998899999999999999998 69999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCCccCCCCccccCCCCcceeEeccCCCcceeeeeccCCCceeEEEecCceecCCCcc
Q 005319 332 YGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWS 411 (702)
Q Consensus 332 ~G~~~~~Ky~~lr~l~~~~~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~N~~~~~~~~v~~~~~~~~~~~~~ 411 (702)
+|++++|||.+||++|++++.+++.|+..+|....+|+++++++|+..+ .|++|+.|++.+.+++|+|+++.|.+|+||
T Consensus 324 ~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~S 402 (840)
T PLN03059 324 YGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWS 402 (840)
T ss_pred ccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccc
Confidence 9999768999999999999999888888888788899999999999776 799999999999999999999999999999
Q ss_pred eeecCCCccccccccccccccccceeeeecccccccccccc-ccCCCCCCCcccCchhhhhcccCCCcceEEEEEEecCC
Q 005319 412 ISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEE-TASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNID 490 (702)
Q Consensus 412 v~il~~~~~~~~~t~~v~~~~~~~~~~p~~~~~~w~~~~e~-~~~~~~~~~~~~~~~~Eql~~t~d~~GyvlY~T~i~~~ 490 (702)
|||||||+.++|+|+++.+|++.+++++....+.|++++|+ .+...+ .++++++++||+++|+|.+||+||+|+|..+
T Consensus 403 vsilpd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~-~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~ 481 (840)
T PLN03059 403 VSILPDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYTD-DTTTMDGLWEQINVTRDATDYLWYMTEVHID 481 (840)
T ss_pred eeecccccceeeeccccccccceeecccccccccceeecccccccccC-CCcchhhHHHhhcccCCCCceEEEEEEEeec
Confidence 99999999999999999999877766666556799999998 443332 4788899999999999999999999999876
Q ss_pred CCcccccCCCCCcEEeCCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeecCCCccEEEEEEecCCCcccccccccccc
Q 005319 491 SNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNA 570 (702)
Q Consensus 491 ~~~~~~~~g~~~~L~i~~~~D~a~VfVng~~vGt~~~~~~~~~~~~~~~~~l~~g~~~L~ILVEnmGrvNyG~~l~~~~K 570 (702)
.++...+++.+++|+|.+++|++||||||+++|+++++....+++++.++++..+.|+|+||||||||+|||++|+++.|
T Consensus 482 ~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~k 561 (840)
T PLN03059 482 PDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNA 561 (840)
T ss_pred CCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccc
Confidence 55433455677889999999999999999999999998877888888888888899999999999999999999999999
Q ss_pred ceeecEEEcccccceeecccCceeEeccCccccccccccCCCCCcccccccccCCCCCceEEEEEEECCCCCCCeEEEcC
Q 005319 571 GVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMG 650 (702)
Q Consensus 571 GI~g~V~L~g~~~g~~~L~~~~W~y~l~L~~e~~~~~~~~~~~~~~w~~~~~~~~~~~p~fYk~tF~lp~~~D~tfLd~s 650 (702)
||+|+|+|+|.+.+..+|++|.|.|+++|+||.+++++.+....+.|++....+...+|+|||++|++|++.|||||||+
T Consensus 562 GI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~ 641 (840)
T PLN03059 562 GVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMS 641 (840)
T ss_pred cccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecc
Confidence 99999999998888889999999999999999999988765567889765443444579999999999999999999999
Q ss_pred CCceEEEEECCeecccccccccCCCCCCCCccCCccCccccccCCCCCcccC
Q 005319 651 AMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRW 702 (702)
Q Consensus 651 gwgKG~vwVNG~nLGRYW~~~~~~~~c~~c~~~g~~~~~~~~t~cg~psq~~ 702 (702)
+||||+|||||+||||||+.+...++|+.|+|||.|+++||+||||+|||++
T Consensus 642 gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~l 693 (840)
T PLN03059 642 SMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRW 693 (840)
T ss_pred cCCCeeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeEE
Confidence 9999999999999999998754579999999999999999999999999985
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-142 Score=1180.62 Aligned_cols=580 Identities=61% Similarity=1.102 Sum_probs=534.6
Q ss_pred ceeEEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHH
Q 005319 36 KASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKL 115 (702)
Q Consensus 36 ~~~v~~d~~~f~~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~l 115 (702)
++.|++|+++|++||+|++++||++||+|++|++|+|+|+|+|++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccC
Q 005319 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (702)
Q Consensus 116 a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENE 195 (702)
|++.||+|+||+||||||||++||+|.||...|++.+||+|++|+++|++|+++|+++++ +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccCccccCCcchHHHHHHHHHHHHhcCCCcceEeecCCCCCCCcccCCCCccc-cccC-CCCCCCCcccccccccccccc
Q 005319 196 FGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-EKFV-PNQNYKPKMWTEAWTGWFTEF 273 (702)
Q Consensus 196 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~g~~~-~~~~-~~~p~~P~~~~E~~~Gwf~~w 273 (702)
||.+...+++.++.|+.|-..|+...+.++||++|.+.++|++++++|||++| +.|. +++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887777778899999999999999999999999999999999999999999 8887 899999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCceeeeeeeccCCCCCCCCCCCccccccCCCCCCccCCCCchhHHHHHHHHHHHHhh
Q 005319 274 GSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLC 353 (702)
Q Consensus 274 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDYdApl~E~G~~~~~Ky~~lr~l~~~~~~~ 353 (702)
|++++.|++++++..+++|+++|+|++||||+|||||||+++|.+.+|||||||||| |..++|||.|+|.+|..++.+
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ 332 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYC 332 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cCCccCCCCccccCCCCcceeEeccCCCcceeeeeccCCCceeEEEecCceecCCCcceeecCCCccccccccccccccc
Q 005319 354 EPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSS 433 (702)
Q Consensus 354 ~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~N~~~~~~~~v~~~~~~~~~~~~~v~il~~~~~~~~~t~~v~~~~~ 433 (702)
++.+..+++...++++.+ +.|+.|+.|++......+.+++..+.+|+|+++|||||++++|+|+++..+
T Consensus 333 ep~lv~gd~~~~kyg~~~---------~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-- 401 (649)
T KOG0496|consen 333 EPALVAGDITTAKYGNLR---------EACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-- 401 (649)
T ss_pred CccccccCcccccccchh---------hHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc--
Confidence 999888876665555443 359999999999888899999999999999999999999999999976321
Q ss_pred cceeeeeccccccccccccccCCCCCCCcccCchhhhhcccCCCcceEEEEEEecCCCCcccccCCCCCcEEeC-CcceE
Q 005319 434 QKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIW-SAGHA 512 (702)
Q Consensus 434 ~~~~~p~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~~GyvlY~T~i~~~~~~~~~~~g~~~~L~i~-~~~D~ 512 (702)
|....|+++ +|..+ |.+||++|+|.++.+.++ ...|+|. +++|+
T Consensus 402 ------------~~~~~e~~~-------------~~~~~---~~~~~ll~~~~~t~d~sd-------~t~~~i~ls~g~~ 446 (649)
T KOG0496|consen 402 ------------WISFTEPIP-------------SEAVG---QSFGGLLEQTNLTKDKSD-------TTSLKIPLSLGHA 446 (649)
T ss_pred ------------cccccCCCc-------------ccccc---CcceEEEEEEeeccccCC-------CceEeecccccce
Confidence 444445433 56665 488999999999865443 2358888 99999
Q ss_pred EEEEECCEEEEEEEcccCCCeeEEeeeeecCCCccEEEEEEecCCCccccccccccccceeecEEEcccccceeecccCc
Q 005319 513 LQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQK 592 (702)
Q Consensus 513 a~VfVng~~vGt~~~~~~~~~~~~~~~~~l~~g~~~L~ILVEnmGrvNyG~~l~~~~KGI~g~V~L~g~~~g~~~L~~~~ 592 (702)
+||||||+++|+++++.....++++.++.+..|.|+|+|||||+||+||| ++++++|||+|+|+|+|. ++++.+.
T Consensus 447 ~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~~ 521 (649)
T KOG0496|consen 447 LHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWTK 521 (649)
T ss_pred EEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----eccceee
Confidence 99999999999999987777888888888889999999999999999999 788999999999999987 4677667
Q ss_pred eeEeccCccccccccccCCCCCcccccccccCCCCCceEEEEEEECCCCCCCeEEEcCCCceEEEEECCeecccccccc
Q 005319 593 WTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGY 671 (702)
Q Consensus 593 W~y~l~L~~e~~~~~~~~~~~~~~w~~~~~~~~~~~p~fYk~tF~lp~~~D~tfLd~sgwgKG~vwVNG~nLGRYW~~~ 671 (702)
|.|+++|++|...++++++.+.++|......+..+|.+||+ +|++|++.+||||||.|||||+|||||+|||||||++
T Consensus 522 w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~ 599 (649)
T KOG0496|consen 522 WPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPSF 599 (649)
T ss_pred cceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCCC
Confidence 99999999999999999988899998765544445778888 9999999999999999999999999999999999987
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=4e-89 Score=731.57 Aligned_cols=296 Identities=44% Similarity=0.799 Sum_probs=229.2
Q ss_pred cEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE
Q 005319 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (702)
Q Consensus 45 ~f~~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi 124 (702)
+|+|||||++|+|||+||+|+|+++|+|+|+||||+|+|||+|||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccccCC
Q 005319 125 LRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG 204 (702)
Q Consensus 125 lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 204 (702)
|||||||||||++||+|.||++++++++|++|+.|++++++|+++|+++++ ++|+++||||||+|||||||.+
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999954
Q ss_pred cchHHHHHHHHHHHHhcCCC-cceEeecCCC--------CCCCcccCCCCccc-cc----c---CCCCCCCCcccccccc
Q 005319 205 APGKAYAKWAAQMAVGLNTG-VPWVMCKQDD--------APDPVINTCNGFYC-EK----F---VPNQNYKPKMWTEAWT 267 (702)
Q Consensus 205 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~~~~g~~~-~~----~---~~~~p~~P~~~~E~~~ 267 (702)
.++++||+.|++++++.+++ ++.++++... .++..+.++.++.+ +. | ...+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 46899999999999999988 5567766531 12222333334444 21 1 2556889999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhCCceeeeeeeccCCCCCCCCCCCc-----cccccCCCCCCccCCCCchhHHH
Q 005319 268 GWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFV-----ATSYDYDAPIDEYGLLNEPKWGH 342 (702)
Q Consensus 268 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~-----~tSYDYdApl~E~G~~~~~Ky~~ 342 (702)
|||++||.+++.+++++++.++++++++|.+ +||||||||||||+++|+.. +|||||+|||+|+|++ +|||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999955 89999999999999999833 4999999999999999 599999
Q ss_pred HHHHHHH
Q 005319 343 LRDLHKA 349 (702)
Q Consensus 343 lr~l~~~ 349 (702)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-36 Score=343.92 Aligned_cols=288 Identities=23% Similarity=0.317 Sum_probs=214.0
Q ss_pred EEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEE-eeeCCCCCCCCCceecccchhHHHHHHHHH
Q 005319 39 VSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (702)
Q Consensus 39 v~~d~~~f~~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~W~~hEp~~G~~df~g~~dl~~fl~la~ 117 (702)
|.+++..+++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |+.|+.|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 78888 999999
Q ss_pred HcCcEEEeecCc-ccccccCCCCCCeeeccCCCeEee---------cCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 005319 118 QAGLYVHLRIGP-YVCAEWNYGGFPVWLKYVPGIEFR---------TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (702)
Q Consensus 118 ~~gL~vilr~GP-yicaEw~~GG~P~WL~~~p~~~~R---------~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpI 187 (702)
+.||+||||||| ..|.+|..++.|+||..++.-..| .+++.|++++++ |+++|+ ++.+++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ir--er~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIR--ERLYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHH--HHHhccCCce
Confidence 999999999999 999999999999999876543232 345667777776 555566 4446899999
Q ss_pred EEeccccCccCccccCCcchHHHHHHHHHHHHhc-CCCcceEeecCC-CCCC-CcccCCC-----Cccc--cccCCCCCC
Q 005319 188 ILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVMCKQD-DAPD-PVINTCN-----GFYC--EKFVPNQNY 257 (702)
Q Consensus 188 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~~~-~~~~-~~~~~~~-----g~~~--~~~~~~~p~ 257 (702)
|+||++||||++.+.++.|.+.+..||++.+-.. ..+-+|-+..-+ +..+ ..|.+.+ .... -++......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999965556778899999999887321 122232111100 0000 0111111 0100 022222222
Q ss_pred C----Cccccccccccc-cccCCCCCCCC-hHHHHHHHHHHHHhCCceeeeeeeccCCCCC------CCCCC--------
Q 005319 258 K----PKMWTEAWTGWF-TEFGSAVPTRP-AEDLVFSVARFIQSGGSFINYYMYHGGTNFG------RTSGG-------- 317 (702)
Q Consensus 258 ~----P~~~~E~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~-------- 317 (702)
+ +....|.+-+|| +.|..+.-... .+--++.+.+.|..+.+ -||||||+|++|+ +.+++
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 556778888888 77776654433 33334555666666655 6999999999999 66554
Q ss_pred ---CccccccCCCCCCccCCC
Q 005319 318 ---FVATSYDYDAPIDEYGLL 335 (702)
Q Consensus 318 ---~~~tSYDYdApl~E~G~~ 335 (702)
...|+|++++.+.+.|..
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 268999999999999994
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.85 E-value=6.1e-21 Score=209.65 Aligned_cols=263 Identities=20% Similarity=0.261 Sum_probs=157.9
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEE-eeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC
Q 005319 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG 138 (702)
Q Consensus 60 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~G 138 (702)
+++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .||++|++|+++||+|||+.. ..
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4556789999999999999999999996 56799999999999999 899999999999999999985 46
Q ss_pred CCCeeecc-CCCeEe----------------ecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccc
Q 005319 139 GFPVWLKY-VPGIEF----------------RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW 201 (702)
Q Consensus 139 G~P~WL~~-~p~~~~----------------R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~ 201 (702)
..|.||.+ .|++.. ..++|.|++++++++++|++++++ ++.||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-------~p~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-------HPAVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-------TTTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-------cceEEEEEeccccCcCcC
Confidence 78999975 455421 134688999999999999888874 458999999999986422
Q ss_pred cCCcchHHHHHHHHHHHHhc-------CC-------------CcceEeecCC----------------------------
Q 005319 202 DIGAPGKAYAKWAAQMAVGL-------NT-------------GVPWVMCKQD---------------------------- 233 (702)
Q Consensus 202 ~~~~~~~~y~~~l~~~~~~~-------g~-------------~vp~~~~~~~---------------------------- 233 (702)
.+..+.++|.+||++++... |. ..|..+....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345678999999988431 11 1121111000
Q ss_pred -CCCCCcccCCC--C---------------------cccc-----------------cc-CCCCCCCCcccccccccccc
Q 005319 234 -DAPDPVINTCN--G---------------------FYCE-----------------KF-VPNQNYKPKMWTEAWTGWFT 271 (702)
Q Consensus 234 -~~~~~~~~~~~--g---------------------~~~~-----------------~~-~~~~p~~P~~~~E~~~Gwf~ 271 (702)
..|+. .-+.| + .|.. ++ +...+++|.+++|..+| -.
T Consensus 224 ~~~p~~-~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPDH-PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCCc-eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 00000 00000 0 0000 00 01247789999999999 55
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhCCceeeeeeeccCCCCCCCCCCCccccccCCCCCCccC-CCCchhHHHHHHHHHHH
Q 005319 272 EFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYG-LLNEPKWGHLRDLHKAI 350 (702)
Q Consensus 272 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDYdApl~E~G-~~~~~Ky~~lr~l~~~~ 350 (702)
.|+.......+..+....-.-++.|+..+.|+-+ ..-.+|.-... .+.|+-+| .+ +++|.+++++.+.|
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~~--------~g~~~~dg~~~-~~~~~e~~~~~~~l 371 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQFH--------GGLVDHDGREP-TRRYREVAQLGREL 371 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTTS----------SB-TTS--B--HHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhhh--------cccCCccCCCC-CcHHHHHHHHHHHH
Confidence 6766555555666666666678999998877655 33344432211 34566779 66 78999999998877
Q ss_pred Hh
Q 005319 351 KL 352 (702)
Q Consensus 351 ~~ 352 (702)
+.
T Consensus 372 ~~ 373 (374)
T PF02449_consen 372 KK 373 (374)
T ss_dssp HT
T ss_pred hc
Confidence 53
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.50 E-value=3.2e-13 Score=144.09 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=108.0
Q ss_pred EEEecCcEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHH
Q 005319 39 VSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRF 112 (702)
Q Consensus 39 v~~d~~~f~~dG~p~~l~sG~~Hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~f 112 (702)
|.+.++.|+|||||++|.|...|... .+++.|+++|++||+||+|+||+ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 57889999999999999999999532 57889999999999999999999 555543 399
Q ss_pred HHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 005319 113 IKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (702)
Q Consensus 113 l~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Qi 192 (702)
+++|.++||.|+..+.=.-++.|..-|.. .....|+.+.+.+.+-+++++++.+ |+++||||-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~-------NHPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRDR-------NHPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHHT-------T-TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcCc-------CcCchheeec
Confidence 99999999999987621112233322211 2345678888777766666655554 6679999999
Q ss_pred ccCccCccccCCcchHHHHHHHHHHHHhcCCCcceEeecC
Q 005319 193 ENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQ 232 (702)
Q Consensus 193 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 232 (702)
.||-. ...+++.|.+++++.+.+.|+.....
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeeccc
Confidence 99992 46788899999999999998755444
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.39 E-value=4.7e-11 Score=139.41 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=110.4
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHH
Q 005319 37 ASVSYDHKAVIINGQKRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (702)
Q Consensus 37 ~~v~~d~~~f~~dG~p~~l~sG~~Hy~------r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~ 110 (702)
.+|++++..|+|||+|+++.+.+.|.. ..+++.|+.+|+.||++|+|+||+ .|-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC-----------H
Confidence 347788899999999999999999842 256788999999999999999999 455533 3
Q ss_pred HHHHHHHHcCcEEEeecCcccccccCCCCCCeeec-------c-CCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccc
Q 005319 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK-------Y-VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQT 182 (702)
Q Consensus 111 ~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~-------~-~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~ 182 (702)
+|+++|.++||+|+.... . + |+..|.. + .+....-..+|.+.++.. +.+.++|+++ .
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~mv~r~----~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-V------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHL---QAIRELIARD----K 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-c------cccccccccccccccccccccccccchhHHHHHH---HHHHHHHHhc----c
Confidence 999999999999998762 1 1 1111211 0 011111122344444433 3355555532 6
Q ss_pred CCCceEEeccccCccCccccCCcchHHHHHHHHHHHHhcCCCcceEee
Q 005319 183 QGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMC 230 (702)
Q Consensus 183 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 230 (702)
|+++||||.|.||.... ......+++.|.+.+++.+.+.|+..+
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 88999999999997532 122456888899999999999887544
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.30 E-value=3.7e-11 Score=147.15 Aligned_cols=185 Identities=20% Similarity=0.221 Sum_probs=122.1
Q ss_pred eEEEecCcEEECCEEeEEEEEEeeCC-----C-CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHH
Q 005319 38 SVSYDHKAVIINGQKRILISGSIHYP-----R-STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (702)
Q Consensus 38 ~v~~d~~~f~~dG~p~~l~sG~~Hy~-----r-~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~ 111 (702)
+|+++++.|+|||+|+++.|...|.. | ++++.|+++|+.||++|+|+||+ .+..+.| +
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------R 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 35677889999999999999999832 1 57889999999999999999999 3444445 9
Q ss_pred HHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 005319 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (702)
Q Consensus 112 fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 191 (702)
|+++|.|+||+|+... |..|..|...+ +...-+++|.+.++ +.+++.++|+++ +|+++||||-
T Consensus 383 fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~---~~~~~~~mV~Rd----rNHPSIi~Ws 445 (1021)
T PRK10340 383 FYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKV---YVDRIVRHIHAQ----KNHPSIIIWS 445 (1021)
T ss_pred HHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHH---HHHHHHHHHHhC----CCCCEEEEEE
Confidence 9999999999999886 33332221101 00011356666543 344455566643 6889999999
Q ss_pred cccCccCccccCCcchHHHHHHHHHHHHhcCCCcceEeecCCCCCCCcccCCCCccc-----cccCCCCCCCCccccccc
Q 005319 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-----EKFVPNQNYKPKMWTEAW 266 (702)
Q Consensus 192 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~p~~P~~~~E~~ 266 (702)
+.||-+. + . .++.+.+.+++.+.+.|+. ..+.... .+.+...-.|. +.+....+.+|++.+||-
T Consensus 446 lGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~-~~~~~~~-~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 446 LGNESGY-----G---C-NIRAMYHAAKALDDTRLVH-YEEDRDA-EVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred CccCccc-----c---H-HHHHHHHHHHHhCCCceEE-eCCCcCc-cccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 9999763 1 2 2356778888888888763 3322111 11222221222 233334457999999983
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.22 E-value=2.2e-10 Score=140.25 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=107.3
Q ss_pred eEEEecCcEEECCEEeEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHH
Q 005319 38 SVSYDHKAVIINGQKRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (702)
Q Consensus 38 ~v~~d~~~f~~dG~p~~l~sG~~Hy~------r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~ 111 (702)
+|+++++.|+|||+|+++.+...|.. +++++.++++|+.||++|+|+||+ .++.+.| +
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------L 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 35677789999999999999999932 368889999999999999999999 4444455 9
Q ss_pred HHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 005319 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (702)
Q Consensus 112 fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 191 (702)
|+++|.|+||+|+-...-..|+-+ |.. . -.+||.|.+++ .+++.++|+++ +|+++||||-
T Consensus 399 fydlcDe~GilV~dE~~~e~hg~~-----~~~---~-----~~~dp~~~~~~---~~~~~~mV~Rd----rNHPSIi~WS 458 (1027)
T PRK09525 399 WYELCDRYGLYVVDEANIETHGMV-----PMN---R-----LSDDPRWLPAM---SERVTRMVQRD----RNHPSIIIWS 458 (1027)
T ss_pred HHHHHHHcCCEEEEecCccccCCc-----ccc---C-----CCCCHHHHHHH---HHHHHHHHHhC----CCCCEEEEEe
Confidence 999999999999988631111111 110 0 13467665544 44556666643 6889999999
Q ss_pred cccCccCccccCCcchHHHHHHHHHHHHhcCCCcceEee
Q 005319 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMC 230 (702)
Q Consensus 192 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 230 (702)
+.||-+. +. ..+.+.+.+++.+.+.|+...
T Consensus 459 lgNE~~~-----g~----~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 459 LGNESGH-----GA----NHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred CccCCCc-----Ch----hHHHHHHHHHhhCCCCcEEEC
Confidence 9999763 11 235567777888888887554
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=4.7e-09 Score=124.74 Aligned_cols=120 Identities=21% Similarity=0.318 Sum_probs=92.9
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCC-----CCC-cccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHH
Q 005319 37 ASVSYDHKAVIINGQKRILISGSIHYP-----RST-PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (702)
Q Consensus 37 ~~v~~d~~~f~~dG~p~~l~sG~~Hy~-----r~~-~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~ 110 (702)
.+|++++..|+|||||+++.|..-|.+ |.. .+.-+++|++||++|+|+||| + |-|+. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt----s-HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT----S-HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe----c-CCCCC-----------H
Confidence 457888899999999999999999953 333 444899999999999999999 3 66665 4
Q ss_pred HHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 005319 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (702)
Q Consensus 111 ~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~ 190 (702)
+|++||.++||+||..+ ..||-. .| +|+.|++.+..= |..++.+. +|+++||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~---i~~mver~----knHPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEE---VRRMVERD----RNHPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHH---HHHHHHhc----cCCCcEEEE
Confidence 99999999999999987 334432 22 677777766544 44444432 577899999
Q ss_pred ccccCccC
Q 005319 191 QIENEFGP 198 (702)
Q Consensus 191 QiENEyg~ 198 (702)
-+.||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999874
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.97 E-value=1.2e-08 Score=106.63 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=107.8
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCC-CCCCc-eecccchhHHHHHHHHHHcCcEEEe
Q 005319 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-PTQGN-YYFQDRYDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 48 ~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hE-p~~G~-~df~g~~dl~~fl~la~~~gL~vil 125 (702)
.+|+++.+.+-+.|... +..-++.+++||++|+|+||+.|.|...+ |.++. ++=+....|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 36999999999999322 12778999999999999999999995544 77764 7777778999999999999999999
Q ss_pred ecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCcccc--C
Q 005319 126 RIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWD--I 203 (702)
Q Consensus 126 r~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~--~ 203 (702)
.+= + .|.|....... ...+...+...++.+.|+++++ +..+|++++|=||....... .
T Consensus 81 d~h----~------~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w 140 (281)
T PF00150_consen 81 DLH----N------APGWANGGDGY---GNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANW 140 (281)
T ss_dssp EEE----E------STTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTT
T ss_pred Eec----c------Ccccccccccc---ccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCcccc
Confidence 762 1 16663221110 1122233344445555665554 34579999999999764211 0
Q ss_pred C----cchHHHHHHHHHHHHhcCCCcceEe
Q 005319 204 G----APGKAYAKWAAQMAVGLNTGVPWVM 229 (702)
Q Consensus 204 ~----~~~~~y~~~l~~~~~~~g~~vp~~~ 229 (702)
. ..-.++.+.+.+..|+.+.+.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 141 NAQNPADWQDWYQRAIDAIRAADPNHLIIV 170 (281)
T ss_dssp SHHHTHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred ccccchhhhhHHHHHHHHHHhcCCcceeec
Confidence 0 0113455666667788888876554
No 12
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.45 E-value=7.6e-07 Score=81.87 Aligned_cols=84 Identities=23% Similarity=0.307 Sum_probs=59.0
Q ss_pred hhhhcccCCCcceEEEEEEecCCCCcccccCCCCCc-EEeC-CcceEEEEEECCEEEEEEEcccCCCeeEEeeeee-cCC
Q 005319 468 WEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPL-LTIW-SAGHALQVFINGQLSGTVYGSLENPKLTFSKNVK-LRP 544 (702)
Q Consensus 468 ~Eql~~t~d~~GyvlY~T~i~~~~~~~~~~~g~~~~-L~i~-~~~D~a~VfVng~~vGt~~~~~~~~~~~~~~~~~-l~~ 544 (702)
.+..+.+++..|++|||++++....+ .... |.+. +.+.+++|||||+++|..... .....+|++|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~------~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-~g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQD------TSLTPLNIQGGNAFRASVWVNGWFLGSYWPG-IGPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEE------EEEE-EEECSSTTEEEEEEETTEEEEEEETT-TECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcc------eeEEEEeccCCCceEEEEEECCEEeeeecCC-CCccEEEEeCceeecC
Confidence 55666667899999999999743221 1123 4454 789999999999999998732 223356666753 555
Q ss_pred CccEEEEEEecCCC
Q 005319 545 GVNKISLLSTSVGL 558 (702)
Q Consensus 545 g~~~L~ILVEnmGr 558 (702)
+.+.|.+|+++||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67899999999996
No 13
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.30 E-value=7.4e-06 Score=87.15 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=88.3
Q ss_pred cccceeEEEecCcEE--ECCEEeEEEEEEeeCCC-----------CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCC
Q 005319 33 SFVKASVSYDHKAVI--INGQKRILISGSIHYPR-----------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG 99 (702)
Q Consensus 33 ~~~~~~v~~d~~~f~--~dG~p~~l~sG~~Hy~r-----------~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G 99 (702)
+..-..|++.++.|. .+|++|+|.+-.+.+.- ..++.|++++..||++|+||||+| ...|..
T Consensus 5 ~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY----~vdp~~- 79 (314)
T PF03198_consen 5 AAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVY----SVDPSK- 79 (314)
T ss_dssp STTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS-
T ss_pred hccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEE----EeCCCC-
Confidence 344557888998888 79999999998877533 245779999999999999999997 344554
Q ss_pred ceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCCh--hHHHHHHHHHHHHHHHHHhc
Q 005319 100 NYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNG--PFKAAMHKFTEKIVSMMKAE 177 (702)
Q Consensus 100 ~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~--~~~~~~~~~~~~l~~~i~~~ 177 (702)
|-++++++.++.|||||+..+. | ...+-..+| .|-...-.-+.++++.++++
T Consensus 80 --------nHd~CM~~~~~aGIYvi~Dl~~-----------p-------~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y 133 (314)
T PF03198_consen 80 --------NHDECMSAFADAGIYVILDLNT-----------P-------NGSINRSDPAPSWNTDLLDRYFAVIDAFAKY 133 (314)
T ss_dssp ----------HHHHHHHHHTT-EEEEES-B-----------T-------TBS--TTS------HHHHHHHHHHHHHHTT-
T ss_pred --------CHHHHHHHHHhCCCEEEEecCC-----------C-------CccccCCCCcCCCCHHHHHHHHHHHHHhccC
Confidence 8889999999999999998742 1 222333445 44333333334466777744
Q ss_pred cccccCCCceEEeccccCccCcccc--CCcchHHHHHHHHHHHHhcCC-Ccce
Q 005319 178 KLFQTQGGPIILSQIENEFGPVEWD--IGAPGKAYAKWAAQMAVGLNT-GVPW 227 (702)
Q Consensus 178 ~~~~~~gGpII~~QiENEyg~~~~~--~~~~~~~y~~~l~~~~~~~g~-~vp~ 227 (702)
.++++.=+.||.-.-... -.++-++..+.+|+-.++.+. .+|+
T Consensus 134 -------~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 -------DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp -------TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred -------CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 489999999998542110 011235555666666665554 3554
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.05 E-value=1.2e-05 Score=84.26 Aligned_cols=117 Identities=20% Similarity=0.324 Sum_probs=86.2
Q ss_pred CCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHH
Q 005319 91 WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKI 170 (702)
Q Consensus 91 W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l 170 (702)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |-. ..|.|+...+ .+...+++++|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 332222 433 6899987432 345567788888888
Q ss_pred HHHHHhccccccCCCceEEeccccCccCccc------c-CCcchHHHHHHHHHHHHhcCCCcceEeecC
Q 005319 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEW------D-IGAPGKAYAKWAAQMAVGLNTGVPWVMCKQ 232 (702)
Q Consensus 171 ~~~i~~~~~~~~~gGpII~~QiENEyg~~~~------~-~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 232 (702)
+.+++ |.|..|+|=||--.... . +...+.+|+...-+.+++.+.++.++.++.
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 87776 46899999999532210 0 112345788888888888888888887653
No 15
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.99 E-value=3.8e-05 Score=74.72 Aligned_cols=99 Identities=25% Similarity=0.367 Sum_probs=68.6
Q ss_pred CCCcceEEEEEEecCCCCcccccCCCCCcEEeCCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeecCCCc-cEEEEEE
Q 005319 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLLS 553 (702)
Q Consensus 475 ~d~~GyvlY~T~i~~~~~~~~~~~g~~~~L~i~~~~D~a~VfVng~~vGt~~~~~~~~~~~~~~~~~l~~g~-~~L~ILV 553 (702)
....|+.|||++|..+... .+....|.+.++.+.+.|||||+++|..... ...+.+.++-.+..|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~--~~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGG--YTPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEEST--TS-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCC--cCCeEEeChhhccCCCCEEEEEEE
Confidence 4578999999999765432 1334568899999999999999999997653 3345555554567777 9999999
Q ss_pred ecCCCccccccc-cccccceeecEEEc
Q 005319 554 TSVGLPNVGTHF-EKWNAGVLGPVTLK 579 (702)
Q Consensus 554 EnmGrvNyG~~l-~~~~KGI~g~V~L~ 579 (702)
.+...-.+-+.. .....||.++|.|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 966553331111 13578999999884
No 16
>TIGR03356 BGL beta-galactosidase.
Probab=97.94 E-value=2.3e-05 Score=88.25 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=80.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~-~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 146 (702)
..|+++|++||++|+|++|+.|.|+..+|. +|++|.+|....+++|+.|.++||.+|+--=. =.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 458899999999999999999999999999 79999999999999999999999998876521 258999876
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 005319 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (702)
Q Consensus 147 ~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~ 176 (702)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5443 3466677777777777777773
No 17
>PLN02161 beta-amylase
Probab=97.72 E-value=0.00011 Score=82.18 Aligned_cols=117 Identities=18% Similarity=0.321 Sum_probs=80.8
Q ss_pred cccHHHHHHHHHHCCCCEEEEeeeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----CC
Q 005319 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----GF 140 (702)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp-~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~G-----G~ 140 (702)
++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..++++++++.||++.+--.=--|+- +-| -|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpL 191 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISL 191 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccC
Confidence 344678999999999999999999999998 799999995 66889999999999643322233433 112 28
Q ss_pred Ceeecc----CCCeEeecC----ChhH----------------HHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 005319 141 PVWLKY----VPGIEFRTD----NGPF----------------KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (702)
Q Consensus 141 P~WL~~----~p~~~~R~~----d~~~----------------~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Qi 192 (702)
|.|+.+ +|++.+... ++.| ++..+.|++.....++ +++ ++-|.-|||
T Consensus 192 P~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~--~~~---~~~I~eI~V 262 (531)
T PLN02161 192 PLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFE--PYI---GNVIEEISI 262 (531)
T ss_pred CHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHH--HHh---cCceEEEEe
Confidence 999975 577644211 1111 2334455555555666 543 468888888
No 18
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.63 E-value=0.00019 Score=76.86 Aligned_cols=225 Identities=20% Similarity=0.278 Sum_probs=112.5
Q ss_pred cCcEE-ECCEEeEEEEEEeeC---CCCCcccHHHHHHHHHHCCCCEEEEeee--CCCC-C-------C----CCCceecc
Q 005319 43 HKAVI-INGQKRILISGSIHY---PRSTPEMWPDLIQKAKDGGLDVIQTYVF--WNGH-E-------P----TQGNYYFQ 104 (702)
Q Consensus 43 ~~~f~-~dG~p~~l~sG~~Hy---~r~~~~~W~~~l~k~ka~G~N~V~~yv~--W~~h-E-------p----~~G~~df~ 104 (702)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+-|||+|++=|+ |... . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 8999999998 5554 3577899999999999999999999776 4322 1 1 11236766
Q ss_pred cc-----hhHHHHHHHHHHcCcEEEee---cCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 005319 105 DR-----YDLVRFIKLVQQAGLYVHLR---IGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (702)
Q Consensus 105 g~-----~dl~~fl~la~~~gL~vilr---~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~ 176 (702)
.. ..|++.|+.|.+.||.+.|- -+||.-+-|-.| |..+ =.+..++|.+.|++++++
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~~~m--------------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--PNIM--------------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------TTSS---------------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--ccCC--------------CHHHHHHHHHHHHHHHhc
Confidence 43 58999999999999997543 234544555433 1111 136788999999999995
Q ss_pred ccccccCCCceEEeccccCccCccccCCcchHHHHHHHHHHHHhcCCCcce-EeecCC-CCC-----CCcccC--C-CCc
Q 005319 177 EKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPW-VMCKQD-DAP-----DPVINT--C-NGF 246 (702)
Q Consensus 177 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~-~~~~~~-~~~-----~~~~~~--~-~g~ 246 (702)
.+ +|| |-|.||+ . ......++.+.+.+.+++.+..-+. ++..+. ..+ .+-++. . .|.
T Consensus 145 ~~-------Nvi-W~l~gd~--~---~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY--F---DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc--C---CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 52 455 8899999 1 1234677777788887776654433 222221 111 111111 1 111
Q ss_pred cc---c-------ccC-CCCCCCCcccccc-ccccccccCCCCCCCChHHHHHHHHHHHHhCC
Q 005319 247 YC---E-------KFV-PNQNYKPKMWTEA-WTGWFTEFGSAVPTRPAEDLVFSVARFIQSGG 297 (702)
Q Consensus 247 ~~---~-------~~~-~~~p~~P~~~~E~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 297 (702)
.. + .+. +..|.+|.+..|- |.|-...+.+.....+++++...+=+-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 10 0 111 4568999999994 45544332222334567777765444444665
No 19
>PLN00197 beta-amylase; Provisional
Probab=97.56 E-value=0.00023 Score=80.38 Aligned_cols=117 Identities=21% Similarity=0.427 Sum_probs=81.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEE--eecCcccccccCCC----
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG---- 138 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp-~~G~~df~g~~dl~~fl~la~~~gL~vi--lr~GPyicaEw~~G---- 138 (702)
.++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..++++++++.||++. +.+ --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556789999999999999999999999998 799999996 5688999999999964 554 33443 212
Q ss_pred -CCCeeecc----CCCeEeecC----ChhH----------------HHHHHHHHHHHHHHHHhccccccCCCceEEeccc
Q 005319 139 -GFPVWLKY----VPGIEFRTD----NGPF----------------KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE 193 (702)
Q Consensus 139 -G~P~WL~~----~p~~~~R~~----d~~~----------------~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiE 193 (702)
-||.|+.+ +|++.+... |..| ++..+.|++.....++ +++ ++.|.-|||.
T Consensus 199 IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~--~~l---~~~I~eI~VG 273 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFK--HLL---GDTIVEIQVG 273 (573)
T ss_pred ccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHH--HHh---cCceeEEEec
Confidence 38999975 567643211 1111 2334445555555555 443 2468889983
No 20
>PLN02705 beta-amylase
Probab=97.56 E-value=0.00021 Score=81.29 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=81.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEE--EeecCcccccccCCC----
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp-~~G~~df~g~~dl~~fl~la~~~gL~v--ilr~GPyicaEw~~G---- 138 (702)
.++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..++++++++.||++ ||.+ --|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 3455788999999999999999999999998 699999996 668899999999996 4554 33544 222
Q ss_pred -CCCeeecc----CCCeEeec--------------CC-hh-----HHHHHHHHHHHHHHHHHhccccccCCCceEEeccc
Q 005319 139 -GFPVWLKY----VPGIEFRT--------------DN-GP-----FKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE 193 (702)
Q Consensus 139 -G~P~WL~~----~p~~~~R~--------------~d-~~-----~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiE 193 (702)
-||.|+.+ +|+|.+.. ++ |. -++....|++.....++ +++ .+|-|.-|||.
T Consensus 340 IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~--~fl--~~g~I~eI~VG 415 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFD--DLF--VEGLITAVEIG 415 (681)
T ss_pred ccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHH--Hhc--cCCceeEEEec
Confidence 28999975 46764321 11 10 12334444544555555 432 34688888883
No 21
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=97.52 E-value=9.6e-05 Score=67.99 Aligned_cols=45 Identities=33% Similarity=0.762 Sum_probs=32.5
Q ss_pred CCceEEEEEEECCCCCCCeE-EEc--CCCceEEEEECCeecccccccc
Q 005319 627 QPMTWYKTTFNVPPGNDPLA-LDM--GAMGKGMVWINGQSIGRHWPGY 671 (702)
Q Consensus 627 ~~p~fYk~tF~lp~~~D~tf-Ld~--sgwgKG~vwVNG~nLGRYW~~~ 671 (702)
.+..|||++|+....+..+. |+. +.+.+++|||||++|||||+.+
T Consensus 34 ~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~ 81 (111)
T PF13364_consen 34 AGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI 81 (111)
T ss_dssp SCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT
T ss_pred CCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC
Confidence 46899999996422211223 333 4589999999999999999655
No 22
>PLN02803 beta-amylase
Probab=97.51 E-value=0.00029 Score=79.38 Aligned_cols=116 Identities=18% Similarity=0.387 Sum_probs=81.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEeeeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEE--eecCcccccccCCC-----
Q 005319 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG----- 138 (702)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp-~~G~~df~g~~dl~~fl~la~~~gL~vi--lr~GPyicaEw~~G----- 138 (702)
++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..++++++++.||++. +.+ --|+- +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~I 179 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSI 179 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 344678999999999999999999999998 599999996 6688999999999964 554 33443 112
Q ss_pred CCCeeecc----CCCeEeecC----Chh----------------HHHHHHHHHHHHHHHHHhccccccCCCceEEeccc
Q 005319 139 GFPVWLKY----VPGIEFRTD----NGP----------------FKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE 193 (702)
Q Consensus 139 G~P~WL~~----~p~~~~R~~----d~~----------------~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiE 193 (702)
-||.|+.+ +|++.+... |.. =++..+.|++.....++ +++ ++-|..|||.
T Consensus 180 pLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~--~~l---~~~I~eI~VG 253 (548)
T PLN02803 180 PLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFK--DYL---GGVIAEIQVG 253 (548)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHH--HHh---cCceEEEEec
Confidence 38999975 577643211 111 12334455555555666 543 3789999983
No 23
>PLN02801 beta-amylase
Probab=97.51 E-value=0.00028 Score=79.24 Aligned_cols=118 Identities=21% Similarity=0.411 Sum_probs=82.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEE--EeecCcccccccCCC----
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp-~~G~~df~g~~dl~~fl~la~~~gL~v--ilr~GPyicaEw~~G---- 138 (702)
.++.-+..|+++|++|+..|.+.|-|.+.|. .|++|||+| ..++++++++.||++ |+.+ --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556789999999999999999999999997 699999995 668899999999996 4554 33443 112
Q ss_pred -CCCeeecc----CCCeEeecC----ChhH----------------HHHHHHHHHHHHHHHHhccccccCCCceEEeccc
Q 005319 139 -GFPVWLKY----VPGIEFRTD----NGPF----------------KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE 193 (702)
Q Consensus 139 -G~P~WL~~----~p~~~~R~~----d~~~----------------~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiE 193 (702)
-||.|+.+ +|++.+... +..| ++..+.|++.....++ +++ .+|-|..|||.
T Consensus 109 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~--~~l--~~~~I~eI~VG 184 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMA--DFL--EAGVIIDIEVG 184 (517)
T ss_pred ccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHH--Hhc--cCCeeEEEEEc
Confidence 38999975 566643211 1111 2333445555555555 432 34788889883
No 24
>PLN02905 beta-amylase
Probab=97.51 E-value=0.00028 Score=80.52 Aligned_cols=79 Identities=20% Similarity=0.416 Sum_probs=62.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEE--eecCcccccccCCC-----C
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG-----G 139 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp-~~G~~df~g~~dl~~fl~la~~~gL~vi--lr~GPyicaEw~~G-----G 139 (702)
+.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..++++++++.||++. +.+ --|+- +-| -
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~IP 359 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 44678999999999999999999999998 799999995 6688999999999964 554 33444 212 3
Q ss_pred CCeeecc----CCCeEe
Q 005319 140 FPVWLKY----VPGIEF 152 (702)
Q Consensus 140 ~P~WL~~----~p~~~~ 152 (702)
||.|+.+ +|+|.+
T Consensus 360 LP~WV~e~g~~nPDiff 376 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFF 376 (702)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999975 577643
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.35 E-value=0.00027 Score=77.82 Aligned_cols=114 Identities=16% Similarity=0.255 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccc----cCCCCCCee
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE----WNYGGFPVW 143 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~-~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaE----w~~GG~P~W 143 (702)
.-+..|+++|++|+..|.+.|-|...|.. |++|||+| .+++.+++++.||++.+-..=--|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45788999999999999999999999997 99999995 67889999999999754322223321 111137999
Q ss_pred ecc---CCCeEeecC--------------ChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 005319 144 LKY---VPGIEFRTD--------------NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (702)
Q Consensus 144 L~~---~p~~~~R~~--------------d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Qi 192 (702)
+.+ ..+|.+... ... ++..+.|++.....++ ++. +-|..|||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 125432111 112 5566677777777777 443 68888887
No 26
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.20 E-value=0.00037 Score=79.23 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=74.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~--~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~ 145 (702)
..|+++|+.||++|+|+.|+-|.|+..+|. +|++|-+|....+++|+.+.++||..|+-- -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 348999999999999999999999999999 699999999999999999999999977654 2346899998
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 005319 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (702)
Q Consensus 146 ~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~ 176 (702)
+.-+- .++...+...+|.+.+++++.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 64332 3466677778888888888873
No 27
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.06 E-value=0.00059 Score=74.10 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=105.7
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEe--eeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccc
Q 005319 55 LISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTY--VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (702)
Q Consensus 55 l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~y--v~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyic 132 (702)
.+|.+++..+...+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688888877655442 3344444569988885 5599999999999999 89999999999999974221 0
Q ss_pred cccCCCCCCeeeccCCCeEeecC-ChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccc---------c
Q 005319 133 AEWNYGGFPVWLKYVPGIEFRTD-NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW---------D 202 (702)
Q Consensus 133 aEw~~GG~P~WL~~~p~~~~R~~-d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 202 (702)
=|.. ..|.|+...+.. ... .+...+.++++++.++.++++ -|.|.+|-|=||--.... -
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 1322 689999864110 000 123678888888888877762 189999999999732210 0
Q ss_pred CCcchHHHHHHHHHHHHhcCCCcceEeecCC
Q 005319 203 IGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD 233 (702)
Q Consensus 203 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~ 233 (702)
+...+.+|++..-+++++...++.++.++..
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 1122456888888888888888889888764
No 28
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.03 E-value=0.0017 Score=74.33 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~--~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 146 (702)
.|+++++.||++|+|+.|+-|.|+...|. +|++|-.|....+++|+.+.++||..++-. -.=.+|.||..
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 58899999999999999999999999997 577899999999999999999999987764 12258999976
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 147 ~-p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
. -+- .++...++..+|.+.+++++.
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 4 332 355666777777777777776
No 29
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.93 E-value=0.00071 Score=77.22 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~--~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 146 (702)
.|+++++.||++|+|+.|+.+.|+..+|. ++++|-+|....+++|+.+.++||..++-. -.=.+|.||..
T Consensus 72 ry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~~ 143 (474)
T PRK09852 72 RYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLVT 143 (474)
T ss_pred hhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 46999999999999999999999999997 567888899999999999999999987654 12358999875
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 147 ~-p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
. -+- .++...++..+|.+.+++++.
T Consensus 144 ~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 144 EYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred hcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 3 332 345555666666666666665
No 30
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.91 E-value=0.0032 Score=68.59 Aligned_cols=105 Identities=28% Similarity=0.489 Sum_probs=66.2
Q ss_pred HHHHHHHHHCCCCEEEEeeeCCCCCCCC-CceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCC---CC-eeec
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGG---FP-VWLK 145 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~~hEp~~-G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG---~P-~WL~ 145 (702)
+|.|+.||+.|+|+||.=| |+ .|.. |..|.+ +..++.+-|+++||.|+|.+- | -.-|...| .| +|..
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-Y-SD~WaDPg~Q~~P~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-Y-SDFWADPGKQNKPAAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--S-SSS--BTTB-B--TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-c-cCCCCCCCCCCCCccCCC
Confidence 5899999999999999977 54 4555 666666 667777777889999999863 1 11222212 11 2221
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCcc
Q 005319 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 197 (702)
Q Consensus 146 ~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg 197 (702)
.+-....+++..|.+.++..|++ +|=.+=||||.||..
T Consensus 99 --------~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 99 --------LSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEIN 136 (332)
T ss_dssp --------SSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGG
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCcccc
Confidence 12345668899999999999994 455677999999974
No 31
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.90 E-value=0.017 Score=57.03 Aligned_cols=137 Identities=15% Similarity=0.221 Sum_probs=83.5
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCC-----CC---CCceecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 005319 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-----PT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (702)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hE-----p~---~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaE 134 (702)
-.+.++.|++.++.||++|+++|=+= |.... |. ++.|.-....-|+.+|++|++.||+|++-.+ -.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~~-- 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--FD-- 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--CC--
Confidence 46899999999999999999998431 32222 12 2223333446899999999999999998763 11
Q ss_pred cCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccccCCcchHHHHHHH
Q 005319 135 WNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWA 214 (702)
Q Consensus 135 w~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 214 (702)
|.|-.. .|+.... .+-+.|++.|. . .++++.+.=+|=|-.|..... ....++.+.|
T Consensus 89 ------~~~w~~--------~~~~~~~---~~~~~v~~el~--~-~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 89 ------PDYWDQ--------GDLDWEA---ERNKQVADELW--Q-RYGHHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred ------chhhhc--------cCHHHHH---HHHHHHHHHHH--H-HHcCCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 223221 2222211 11122555555 2 245667888898999987553 2245566666
Q ss_pred HHHHHhcCCCcceEe
Q 005319 215 AQMAVGLNTGVPWVM 229 (702)
Q Consensus 215 ~~~~~~~g~~vp~~~ 229 (702)
.+.+++.-.+.|+..
T Consensus 145 ~~~lk~~s~~~Pv~I 159 (166)
T PF14488_consen 145 GKYLKQISPGKPVMI 159 (166)
T ss_pred HHHHHHhCCCCCeEE
Confidence 666665544555543
No 32
>PLN02998 beta-glucosidase
Probab=96.88 E-value=0.00097 Score=76.51 Aligned_cols=95 Identities=13% Similarity=0.203 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~-~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~ 147 (702)
.|+++++.||+||+|+-|+-|.|+-.+|. .|.+|-+|..--+++|+.+.++||..++--= =| .+|.||...
T Consensus 83 ry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~~ 154 (497)
T PLN02998 83 KYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALEDE 154 (497)
T ss_pred hhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHHh
Confidence 48999999999999999999999999997 6789999999999999999999998765531 23 479999764
Q ss_pred -CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 148 -p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
-+- .++...++..+|.+.+++++.
T Consensus 155 yGGW----~n~~~v~~F~~YA~~~~~~fg 179 (497)
T PLN02998 155 YGGW----LSQEIVRDFTAYADTCFKEFG 179 (497)
T ss_pred hCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 443 233344444444444555444
No 33
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.0057 Score=65.46 Aligned_cols=133 Identities=19% Similarity=0.323 Sum_probs=97.6
Q ss_pred HHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCC
Q 005319 77 AKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDN 156 (702)
Q Consensus 77 ~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d 156 (702)
.|+.+.=|-+.-.=|+..||++|.|+|+ --|++.+.|+++||.+--- +-| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc-----cCh
Confidence 4444444444445599999999999999 6789999999999965211 111 322 5788987532 244
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCcc-------ccCCcchHHHHHHHHHHHHhcCCCcceEe
Q 005319 157 GPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVE-------WDIGAPGKAYAKWAAQMAVGLNTGVPWVM 229 (702)
Q Consensus 157 ~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 229 (702)
+..++.+++++..++.+.+ |.|+.|-|=||--..+ +..+..+.+|+++.-+.+++.+.+.-++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 6788999999999999998 4589999999973211 11124567899999999999888887888
Q ss_pred ecC
Q 005319 230 CKQ 232 (702)
Q Consensus 230 ~~~ 232 (702)
++.
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 776
No 34
>PLN02814 beta-glucosidase
Probab=96.79 E-value=0.0012 Score=75.78 Aligned_cols=95 Identities=15% Similarity=0.220 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~-~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~ 147 (702)
.|+++++.||+||+|+-|+-|.|+-.+|. +|.+|-+|..-.+++|+.+.++||..++--= =|+ +|.||.+.
T Consensus 78 ry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~d---lP~~L~~~ 149 (504)
T PLN02814 78 KYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HYD---LPQSLEDE 149 (504)
T ss_pred hhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHHh
Confidence 48999999999999999999999999996 6889999999999999999999998776531 233 79999764
Q ss_pred -CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 148 -p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
-+- .++...++..+|.+.+++++.
T Consensus 150 yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 150 YGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred cCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 332 233444444555555555554
No 35
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.78 E-value=0.0036 Score=71.48 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=73.8
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~-~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~ 147 (702)
.|+++++.||++|+|+-|+-|.|+-.+|. .|.+|-.|...-+++|+.+.++||.-++-.= =| .+|.||.+.
T Consensus 55 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 126 (469)
T PRK13511 55 RYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHSN 126 (469)
T ss_pred hhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHHc
Confidence 47899999999999999999999999997 5789999999999999999999998766531 12 489999865
Q ss_pred CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 148 p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
-+- .++...++..+|.+.+++++.
T Consensus 127 GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 127 GDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 332 344455555555555555554
No 36
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.73 E-value=0.0045 Score=70.70 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=76.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~-~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 146 (702)
..|+++++.||+||+|+-|+-|.|+..+|. +|.+|-+|..--+++|+.+.++||..++--= =| -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHH
Confidence 348899999999999999999999999996 6788999999999999999999999776541 13 48999976
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 005319 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (702)
Q Consensus 147 ~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~ 176 (702)
.-+- .++...++..+|.+.+++.+.+
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fgd 150 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFPE 150 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhCC
Confidence 5443 3455556666666666666653
No 37
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.71 E-value=0.0018 Score=74.08 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~--~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~ 145 (702)
..|+++++.||+||+|+.|+-|.|+-.+|. +|++|-.|..--+++|+.+.++||..++-.= =| .+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCCHHHH
Confidence 458999999999999999999999999997 6678999999999999999999998765431 13 4899997
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 146 ~~-p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
.. -+- .++...++..+|.+.+++++.
T Consensus 145 ~~~GGW----~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 145 EEYGGW----RNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred hhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 54 343 233334444445444555444
No 38
>PLN02849 beta-glucosidase
Probab=96.62 E-value=0.002 Score=74.15 Aligned_cols=95 Identities=15% Similarity=0.241 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~-~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~ 147 (702)
.|+++++.||+||+|+-|+-|.|+-.+|. .|.+|-+|....+++|+.+.++||.-++--= =| -+|.||.+.
T Consensus 80 rY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 151 (503)
T PLN02849 80 KYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLEDD 151 (503)
T ss_pred hHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHHh
Confidence 48999999999999999999999999997 3789999999999999999999998766531 23 389999764
Q ss_pred -CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 148 -p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
-+- .++...++..+|.+.+++++.
T Consensus 152 yGGW----~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 152 YGGW----INRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred cCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 342 233444444445444555444
No 39
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.62 E-value=0.002 Score=73.72 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~--~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~ 145 (702)
..|+++++.||+||+|+-|+-|.|+-.+|. +|++|-+|...-+++|+.+.++||.-++-.= =| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 348999999999999999999999999997 5678999999999999999999998766541 13 4899997
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 146 ~~-p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
.. -+- .++...++..+|.+.+++.+.
T Consensus 139 ~~yGGW----~n~~~i~~F~~YA~~~f~~fg 165 (476)
T PRK09589 139 TEYGGW----RNRKLIDFFVRFAEVVFTRYK 165 (476)
T ss_pred HhcCCc----CChHHHHHHHHHHHHHHHHhc
Confidence 54 343 233444444455555555554
No 40
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.0072 Score=67.83 Aligned_cols=115 Identities=15% Similarity=0.080 Sum_probs=72.1
Q ss_pred CcccH-----HHHHHHHHHCCCCEEEEeeeCCCCCCC----CCceecccchhHHHHHHHHHHcCcEEEee----cCcccc
Q 005319 66 TPEMW-----PDLIQKAKDGGLDVIQTYVFWNGHEPT----QGNYYFQDRYDLVRFIKLVQQAGLYVHLR----IGPYVC 132 (702)
Q Consensus 66 ~~~~W-----~~~l~k~ka~G~N~V~~yv~W~~hEp~----~G~~df~g~~dl~~fl~la~~~gL~vilr----~GPyic 132 (702)
....| ++.+..||.+|||+||.++.|..+++. |...+=+-...|++.|+-|++.||+|++- ||.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45568 899999999999999999994443553 33332222237899999999999999998 333222
Q ss_pred cccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccC
Q 005319 133 AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 198 (702)
Q Consensus 133 aEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~ 198 (702)
-| ..|....-. .....+++..+-++.|+.+.+ +.-.||++|+=||.-.
T Consensus 146 ~~------~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSDYK-----EENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccccc-----ccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 22 122211100 012223344444445555555 3568999999999863
No 41
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.96 E-value=0.039 Score=58.47 Aligned_cols=115 Identities=25% Similarity=0.339 Sum_probs=73.0
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHH---HcCcEEEeecCcccccccCCCCCCeeecc
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ---QAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~---~~gL~vilr~GPyicaEw~~GG~P~WL~~ 146 (702)
=+|.|+-+|+.|+|.||.- .|+..--+.|.=-=.|+.|+...+++|+ .+||+|++.+= |- .=|.- |+- .+
T Consensus 65 ~qD~~~iLK~~GvNyvRlR-vwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-YS-DfwaD---Pak-Q~ 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLR-VWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-YS-DFWAD---PAK-QK 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEE-EecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-ch-hhccC---hhh-cC
Confidence 4689999999999999984 4775543444444456789999998875 48999999862 10 00100 000 00
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCcc
Q 005319 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 197 (702)
Q Consensus 147 ~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg 197 (702)
+|.-..--+-..-.+++-.|.+..+..+++. |=-+=||||.||-.
T Consensus 138 kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn 182 (403)
T COG3867 138 KPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETN 182 (403)
T ss_pred CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccC
Confidence 1211111122334567778888888888843 44566999999983
No 42
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.85 E-value=0.043 Score=64.70 Aligned_cols=100 Identities=23% Similarity=0.209 Sum_probs=66.4
Q ss_pred CCcceEEEEEEecCCCCcccccCCCCCcEEeCCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeecCCCc-cEEEEEEe
Q 005319 476 DASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLLST 554 (702)
Q Consensus 476 d~~GyvlY~T~i~~~~~~~~~~~g~~~~L~i~~~~D~a~VfVng~~vGt~~~~~~~~~~~~~~~~~l~~g~-~~L~ILVE 554 (702)
+..|..|||++|..+... .+....|.+.++...|.|||||++||.-.+- ...+.|.++-.+..|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~--~~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGG--YTPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCC--ccceEEeCchhccCCCceEEEEEEe
Confidence 356889999999864321 2345679999999999999999999986543 3345555443455564 49999998
Q ss_pred cCCCc---ccccccc--------------ccccceeecEEEccc
Q 005319 555 SVGLP---NVGTHFE--------------KWNAGVLGPVTLKGL 581 (702)
Q Consensus 555 nmGrv---NyG~~l~--------------~~~KGI~g~V~L~g~ 581 (702)
|.-+. ..|...+ -..-||..+|.|...
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 74221 0111000 135799999998654
No 43
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.011 Score=66.50 Aligned_cols=95 Identities=18% Similarity=0.301 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCCCC--ceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G--~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 146 (702)
.++++++.||+||+|+.|+-|.|+..-|..+ +.|-.|..-.+++++.|.++||.-++-.- =| -+|.||.+
T Consensus 60 rYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hf---d~P~~L~~ 131 (460)
T COG2723 60 RYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HF---DLPLWLQK 131 (460)
T ss_pred hhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCcHHHhh
Confidence 4789999999999999999999999999765 48999999999999999999999776541 23 37999987
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 147 ~-p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
. -+-. +..-.++..+|.+.+++++.
T Consensus 132 ~ygGW~----nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 132 PYGGWE----NRETVDAFARYAATVFERFG 157 (460)
T ss_pred ccCCcc----CHHHHHHHHHHHHHHHHHhc
Confidence 6 3432 22334445555555555555
No 44
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.74 E-value=0.12 Score=58.77 Aligned_cols=149 Identities=17% Similarity=0.254 Sum_probs=99.3
Q ss_pred CcEEECCEEeEEEEEEeeCC-----CCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHH
Q 005319 44 KAVIINGQKRILISGSIHYP-----RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ 118 (702)
Q Consensus 44 ~~f~~dG~p~~l~sG~~Hy~-----r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~ 118 (702)
..|.|++.|+++.++.--+. |..-+.-+-.|+-++++|+|++|+ |. -|.|.- +.|.++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GGvYEs------d~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GGVYES------DYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Cccccc------hhHHHHhhh
Confidence 57899999999998876542 234445566799999999999999 55 345544 499999999
Q ss_pred cCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccC---
Q 005319 119 AGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE--- 195 (702)
Q Consensus 119 ~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENE--- 195 (702)
.||.|--.. =+.||-. ..|..|+..++.=++.=+.+|+ .+..||.+.=.||
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls-------~HpSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLS-------HHPSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhc-------cCCeEEEEeCCCccHH
Confidence 999886443 2345543 3577888888776555555565 4468888876555
Q ss_pred ------ccCcc-ccC-Ccch--HHHHHHHHHHHHhcCCCcceEeecC
Q 005319 196 ------FGPVE-WDI-GAPG--KAYAKWAAQMAVGLNTGVPWVMCKQ 232 (702)
Q Consensus 196 ------yg~~~-~~~-~~~~--~~y~~~l~~~~~~~g~~vp~~~~~~ 232 (702)
||... .+. ...+ --|.+-++++........|.++...
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 33210 000 0011 1255667777777788899887654
No 45
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.13 E-value=0.14 Score=48.77 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=62.5
Q ss_pred HHHHHHHHCCCCEEEEeee----C-----CCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCe
Q 005319 72 DLIQKAKDGGLDVIQTYVF----W-----NGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (702)
Q Consensus 72 ~~l~k~ka~G~N~V~~yv~----W-----~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~ 142 (702)
+-++.+|++|+|+|.++.- | ..|.+.|+- .. .-|.++++.|++.||.|++|...- -.|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~---Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KR---DLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-Cc---CHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998432 2 334455543 12 366899999999999999998654 34444446799
Q ss_pred eeccCCCe-------------EeecCChhHHHHHHHHHHHHHHH
Q 005319 143 WLKYVPGI-------------EFRTDNGPFKAAMHKFTEKIVSM 173 (702)
Q Consensus 143 WL~~~p~~-------------~~R~~d~~~~~~~~~~~~~l~~~ 173 (702)
|+..+++= ..-+.+.+|++.+.+-+++|+..
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 99764321 11123456776665555555443
No 46
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.79 E-value=0.1 Score=65.24 Aligned_cols=95 Identities=20% Similarity=0.304 Sum_probs=65.6
Q ss_pred ceEEEEEEecCCCCcccccCCCCCcEEeCCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeecCCCccEEEEEEecCCC
Q 005319 479 DYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGL 558 (702)
Q Consensus 479 GyvlY~T~i~~~~~~~~~~~g~~~~L~i~~~~D~a~VfVng~~vGt~~~~~~~~~~~~~~~~~l~~g~~~L~ILVEnmGr 558 (702)
+--|||++|..+..- .+....|.+.++...+.|||||++||.-.+. ...+.|.+.-.++.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~--~~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGS--RLTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCC--CccEEEEcchhhCCCccEEEEEEEecCC
Confidence 557999999865421 2345678999999999999999999976432 3345555443466788999999975432
Q ss_pred ccccccccc----cccceeecEEEcccc
Q 005319 559 PNVGTHFEK----WNAGVLGPVTLKGLN 582 (702)
Q Consensus 559 vNyG~~l~~----~~KGI~g~V~L~g~~ 582 (702)
-.| +++ ..-||..+|.|--.+
T Consensus 183 ~s~---le~qd~w~~sGI~R~V~L~~~p 207 (1021)
T PRK10340 183 STY---LEDQDMWWLAGIFRDVYLVGKP 207 (1021)
T ss_pred CCc---cccCCccccccccceEEEEEeC
Confidence 222 221 247999999986553
No 47
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.99 E-value=0.2 Score=62.74 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=63.1
Q ss_pred ceEEEEEEecCCCCcccccCCC-CCcEEeCCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeecCCCccEEEEEEecCC
Q 005319 479 DYLWYMTDVNIDSNEGFLKNGQ-DPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (702)
Q Consensus 479 GyvlY~T~i~~~~~~~~~~~g~-~~~L~i~~~~D~a~VfVng~~vGt~~~~~~~~~~~~~~~~~l~~g~~~L~ILVEnmG 557 (702)
+-.|||++|..+..- .+. ...|.+.++...+.|||||++||.-.+ ....+.|.+.-.++.|.|+|.|.|..--
T Consensus 120 ~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g--~~~pfefDIT~~l~~G~N~L~V~V~~~s 193 (1027)
T PRK09525 120 PTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQD--SRLPAEFDLSPFLRAGENRLAVMVLRWS 193 (1027)
T ss_pred CeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecC--CCceEEEEChhhhcCCccEEEEEEEecC
Confidence 568999999865321 112 356889999999999999999997643 2334555544346678899999985322
Q ss_pred Cccccccccc----cccceeecEEEccc
Q 005319 558 LPNVGTHFEK----WNAGVLGPVTLKGL 581 (702)
Q Consensus 558 rvNyG~~l~~----~~KGI~g~V~L~g~ 581 (702)
. |..+++ ...||..+|.|--.
T Consensus 194 d---gs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 194 D---GSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred C---CCccccCCceeeccccceEEEEEc
Confidence 1 222221 24699999998654
No 48
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=92.83 E-value=19 Score=40.40 Aligned_cols=244 Identities=16% Similarity=0.189 Sum_probs=124.6
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEE-------eeeCCCCCCCCCceecc-cchhHHHHHHHHHHcCcEEEeecCcccccc
Q 005319 63 PRSTPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (702)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N~V~~-------yv~W~~hEp~~G~~df~-g~~dl~~fl~la~~~gL~vilr~GPyicaE 134 (702)
.+..++.| .+.+|++|+..|-. +-.|.-....-..-+-. ++.-|.++.+.|+++||++-+=-.+ -+
T Consensus 79 ~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~D 152 (384)
T smart00812 79 EKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FD 152 (384)
T ss_pred hhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HH
Confidence 34566666 46788999885432 22344332211111111 2345678999999999977664332 36
Q ss_pred cCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccccCCcchHHHHHHH
Q 005319 135 WNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWA 214 (702)
Q Consensus 135 w~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 214 (702)
|.. |.|....+....+.+.+.|.++++.|+.+|.+.|.++ ||-|+|- +-..+.. ...--++.|
T Consensus 153 W~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~~l 215 (384)
T smart00812 153 WFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSKEF 215 (384)
T ss_pred hCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHHHH
Confidence 754 4443211111123456778888888888888888833 3445552 2111110 011113445
Q ss_pred HHHHHhcCCCc-ceEeecCCCCCCCcccCCCCcc-c-cccCCCC-CCCCcc-ccccccccccccCC-CCCCCChHHHHHH
Q 005319 215 AQMAVGLNTGV-PWVMCKQDDAPDPVINTCNGFY-C-EKFVPNQ-NYKPKM-WTEAWTGWFTEFGS-AVPTRPAEDLVFS 288 (702)
Q Consensus 215 ~~~~~~~g~~v-p~~~~~~~~~~~~~~~~~~g~~-~-~~~~~~~-p~~P~~-~~E~~~Gwf~~wG~-~~~~~~~~~~~~~ 288 (702)
.+++++...+. -++.++.... . .....++. + +...+.. ...|-- ++=.-.+|+=+-++ ....++++++...
T Consensus 216 ~~~~~~~qP~~~~vvvn~R~~~-~--~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~ 292 (384)
T smart00812 216 LAWLYNLSPVKDTVVVNDRWGG-T--GCKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRD 292 (384)
T ss_pred HHHHHHhCCCCceEEEEccccc-c--CCCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHH
Confidence 55555544332 1133333210 0 00000011 1 1111100 011110 00011245544333 2336789999999
Q ss_pred HHHHHHhCCce-eeeeeeccCCCCCCCCCCCccccccCCCCCCccCCCCchhHHHHHHHHHHHHhhcCCc
Q 005319 289 VARFIQSGGSF-INYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPAL 357 (702)
Q Consensus 289 ~~~~l~~g~s~-~n~YM~hGGTNfG~~~g~~~~tSYDYdApl~E~G~~~~~Ky~~lr~l~~~~~~~~~~l 357 (702)
+....++|+++ +| -+-+.+|.+..+.-..|+++...++..++..
T Consensus 293 l~~~Vsk~GnlLLN-------------------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaI 337 (384)
T smart00812 293 LVDIVSKGGNLLLN-------------------------VGPKADGTIPEEEEERLLEIGKWLKVNGEAI 337 (384)
T ss_pred HhhhcCCCceEEEc-------------------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCcee
Confidence 99999999874 33 2445678886667788999999998766543
No 49
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.59 E-value=0.45 Score=51.68 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=71.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCC-------CCCCCCCce------ecccchhHHHHHHHHHHcCcEEEeecCcccc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWN-------GHEPTQGNY------YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~-------~hEp~~G~~------df~g~~dl~~fl~la~~~gL~vilr~GPyic 132 (702)
.++.-++.|++++++|+|+|-.-|-+. -.+|..+.. + .|..-|..+|+.|++.||.|..+. .+-.
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~-pg~DpL~~~I~eaHkrGlevHAW~-~~~~ 94 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKD-PGFDPLEFMIEEAHKRGLEVHAWF-RVGF 94 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCC-CCccHHHHHHHHHHHcCCEEEEEE-Eeec
Confidence 567788999999999999997655542 223321100 1 122379999999999999999776 1111
Q ss_pred cccCC----CCCCeeec-cCCCeEeec----CChhH----HHHHHHHHHHHHHHHHhccccccCCCceEEecccc
Q 005319 133 AEWNY----GGFPVWLK-YVPGIEFRT----DNGPF----KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN 194 (702)
Q Consensus 133 aEw~~----GG~P~WL~-~~p~~~~R~----~d~~~----~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiEN 194 (702)
..-.. -..|.|+. +.++..... .+..| ..+|++|+..++..|.+ .+ +|=++|++-
T Consensus 95 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 95 NAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred CCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 10011 12578875 345532322 12222 46788888776666542 22 466778873
No 50
>PRK09936 hypothetical protein; Provisional
Probab=92.48 E-value=0.42 Score=51.00 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=46.8
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccc-hhHHHHHHHHHHcCcEEEee
Q 005319 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR-YDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~-~dl~~fl~la~~~gL~vilr 126 (702)
.+++++.|++.++.+|+.||+|+=+ =|..- |.=||.+. -.|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 4689999999999999999998744 46543 11188764 59999999999999999875
No 51
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=92.44 E-value=1.1 Score=51.80 Aligned_cols=321 Identities=17% Similarity=0.225 Sum_probs=147.6
Q ss_pred EEeEEEEEEeeC------CCCCcccHHHHHHHH---HHCCCCEEEEeee---CCCCCC----CCCcee---cccc----h
Q 005319 51 QKRILISGSIHY------PRSTPEMWPDLIQKA---KDGGLDVIQTYVF---WNGHEP----TQGNYY---FQDR----Y 107 (702)
Q Consensus 51 ~p~~l~sG~~Hy------~r~~~~~W~~~l~k~---ka~G~N~V~~yv~---W~~hEp----~~G~~d---f~g~----~ 107 (702)
+++.=++|++=- ...+++.=++.|+.+ +-+|+|.+|+.|- .+.++- .|+.|+ |+=. .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~ 153 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKK 153 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHT
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchh
Confidence 445557887742 234444333334333 5589999999875 222221 133222 2211 1
Q ss_pred hHHHHHHHHHHc--CcEEEeecCcccccccCCCCCCeeeccCCCe----Eeec-CChhHHHHHHHHHHHHHHHHHhcccc
Q 005319 108 DLVRFIKLVQQA--GLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFRT-DNGPFKAAMHKFTEKIVSMMKAEKLF 180 (702)
Q Consensus 108 dl~~fl~la~~~--gL~vilr~GPyicaEw~~GG~P~WL~~~p~~----~~R~-~d~~~~~~~~~~~~~l~~~i~~~~~~ 180 (702)
.+..+|+.|++. +|+++.-| |. .|+|+.....+ .++. ..+.|.++..+||.+-++.++
T Consensus 154 ~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~----- 218 (496)
T PF02055_consen 154 YKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYK----- 218 (496)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHH-----
Confidence 234678877663 57888777 54 89999875332 2332 245677777777777777776
Q ss_pred ccCCCceEEeccccCccCc-----ccc---CCc-chHHHHH-HHHHHHHhcCC--CcceEeecCC--CCCC---Cccc--
Q 005319 181 QTQGGPIILSQIENEFGPV-----EWD---IGA-PGKAYAK-WAAQMAVGLNT--GVPWVMCKQD--DAPD---PVIN-- 241 (702)
Q Consensus 181 ~~~gGpII~~QiENEyg~~-----~~~---~~~-~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~~~~-- 241 (702)
.+|=+|=++.+.||.... .+. +.+ ..++|+. .|.-.+++.++ ++-++..+.. ..|+ .++.
T Consensus 219 -~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~ 297 (496)
T PF02055_consen 219 -KEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDP 297 (496)
T ss_dssp -CTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSH
T ss_pred -HCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcCh
Confidence 455599999999998631 110 111 2345654 47777888776 6766665421 1221 1111
Q ss_pred ----CCC--Cccc----------cccCCCCCCCCccccccccccccccCCCCCCC---ChHHHHHHHHHHHHhCCceeee
Q 005319 242 ----TCN--GFYC----------EKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTR---PAEDLVFSVARFIQSGGSFINY 302 (702)
Q Consensus 242 ----~~~--g~~~----------~~~~~~~p~~P~~~~E~~~Gwf~~wG~~~~~~---~~~~~~~~~~~~l~~g~s~~n~ 302 (702)
... ++++ +......|++.++.||-..|.- .|+...... .++..+..+..-+..+++ ++
T Consensus 298 ~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw 374 (496)
T PF02055_consen 298 EAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GW 374 (496)
T ss_dssp HHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EE
T ss_pred hhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--ee
Confidence 111 1222 1122457899999999876521 122111111 123334444344555543 22
Q ss_pred ee------eccCCCCCCCC-CCCccccccCCCCCCccCC-CCchhHHHHHHHHHHHHhhcCCccCCCCccccCCCCccee
Q 005319 303 YM------YHGGTNFGRTS-GGFVATSYDYDAPIDEYGL-LNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAH 374 (702)
Q Consensus 303 YM------~hGGTNfG~~~-g~~~~tSYDYdApl~E~G~-~~~~Ky~~lr~l~~~~~~~~~~l~~~~p~~~~~~~~~~~~ 374 (702)
-+ -.||-|++.-. .+..+. |- +.+. ..+|.|+.|..+.+|++.-...+-.. ........+..
T Consensus 375 ~~WNl~LD~~GGP~~~~n~~d~~iiv--d~-----~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st---~~~~~~~l~~v 444 (496)
T PF02055_consen 375 IDWNLALDENGGPNWVGNFCDAPIIV--DS-----DTGEFYKQPEYYAMGHFSKFVRPGAVRIGST---SSSSDSGLEAV 444 (496)
T ss_dssp EEEESEBETTS---TT---B--SEEE--EG-----GGTEEEE-HHHHHHHHHHTTS-TT-EEEEEE---ESSSTTTEEEE
T ss_pred eeeeeecCCCCCCcccCCCCCceeEE--Ec-----CCCeEEEcHHHHHHHHHhcccCCCCEEEEee---ccCCCCceeEE
Confidence 22 24888875421 122111 10 1121 23689999988777664211111000 00001134566
Q ss_pred EeccCCCcceeeeeccCCCce-eEEEe
Q 005319 375 VFNSKSGKCAAFLANYDTTFS-AKVSF 400 (702)
Q Consensus 375 ~y~~~~~~~~~fl~N~~~~~~-~~v~~ 400 (702)
.|..+++..++.+.|...... ++|++
T Consensus 445 AF~nPDGs~vvVv~N~~~~~~~~~v~v 471 (496)
T PF02055_consen 445 AFLNPDGSIVVVVLNRGDSDQNFSVTV 471 (496)
T ss_dssp EEEETTSEEEEEEEE-SSS-EEEEEEE
T ss_pred EEECCCCCEEEEEEcCCCCccceEEEE
Confidence 677788888888888654433 23444
No 52
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.32 E-value=2 Score=51.07 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=40.2
Q ss_pred HHH-HHHHHCCCCEEEE-eeeCCCCCCCCCce----------ecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 72 DLI-QKAKDGGLDVIQT-YVFWNGHEPTQGNY----------YFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 72 ~~l-~k~ka~G~N~V~~-yv~W~~hEp~~G~~----------df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
++| .-+|++|+|+|.+ +|+..-.... --| .|.+..+|.+|++.|++.||.|||..=
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 343 7779999999999 6765321110 012 345567999999999999999999843
No 53
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=92.28 E-value=0.11 Score=58.27 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=106.2
Q ss_pred cEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCC-CC---CCCceec-ccchhHHHHHHHHHHc
Q 005319 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EP---TQGNYYF-QDRYDLVRFIKLVQQA 119 (702)
Q Consensus 45 ~f~~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~h-Ep---~~G~~df-~g~~dl~~fl~la~~~ 119 (702)
.|.++++++..++..--++++..++-+++|+.|+.+|++++|+. -+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 48888888888877777778877888899999999999999995 344 55 2333222 3345789999999999
Q ss_pred CcEEEeecCcccccccCCCCCC---eeec-cCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccC
Q 005319 120 GLYVHLRIGPYVCAEWNYGGFP---VWLK-YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (702)
Q Consensus 120 gL~vilr~GPyicaEw~~GG~P---~WL~-~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENE 195 (702)
+|+|+++. |.+==.+||.= .|-- +.|+-.+ .|+.++..-++|.+.+++-. +.+..|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~y-------k~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPY-------KLDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhh-------ccChHHHHHHhcCC
Confidence 99998774 33322345532 1221 1233222 25666666778877776644 45568899999999
Q ss_pred ccCccccCCcchHHHHHHHHHHH
Q 005319 196 FGPVEWDIGAPGKAYAKWAAQMA 218 (702)
Q Consensus 196 yg~~~~~~~~~~~~y~~~l~~~~ 218 (702)
+... -...+..+++|+++|+
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy 167 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMY 167 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHH
Confidence 2210 1224678999999996
No 54
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=91.52 E-value=0.22 Score=48.30 Aligned_cols=45 Identities=29% Similarity=0.622 Sum_probs=37.0
Q ss_pred CCceEEEEEEECCCCC--CCeEEEcCCC-ceEEEEECCeecccccccc
Q 005319 627 QPMTWYKTTFNVPPGN--DPLALDMGAM-GKGMVWINGQSIGRHWPGY 671 (702)
Q Consensus 627 ~~p~fYk~tF~lp~~~--D~tfLd~sgw-gKG~vwVNG~nLGRYW~~~ 671 (702)
....||+.+|++|+.. ..++|.+.+. ....|||||+.+|+-...+
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~ 114 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY 114 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc
Confidence 4679999999998643 3589999984 7999999999999976543
No 55
>smart00642 Aamy Alpha-amylase domain.
Probab=91.42 E-value=0.52 Score=46.44 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCC-------CCCce-----ecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEP-------TQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp-------~~G~~-----df~g~~dl~~fl~la~~~gL~vilr~GPyicaE 134 (702)
+.+.|..+|++|+|+|.+-=++...+. .+..| .|....+++++++.|+++||.||+..=|-=++.
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 456677799999999988543332221 11112 355668999999999999999999875544444
No 56
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.38 E-value=1.1 Score=50.30 Aligned_cols=122 Identities=20% Similarity=0.261 Sum_probs=80.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEee-------------eCCCCCCCCCce-ecccchhHHHHHHHHHHcCcEEEeecCccc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYV-------------FWNGHEPTQGNY-YFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv-------------~W~~hEp~~G~~-df~g~~dl~~fl~la~~~gL~vilr~GPyi 131 (702)
.+..-.+.|.+++++|+|||-.=| +|..- .||++ -=.|..-|...|++|++.||.|+.+.-||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~--~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDG--LPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccC--cCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 566778999999999999986522 22222 24433 123455789999999999999999998888
Q ss_pred ccccCCCC---CCeeeccC-CCeE-eecCC-------hhHHHHHHHHHHH-HHHHHHhccccccCCCceEEeccccCcc
Q 005319 132 CAEWNYGG---FPVWLKYV-PGIE-FRTDN-------GPFKAAMHKFTEK-IVSMMKAEKLFQTQGGPIILSQIENEFG 197 (702)
Q Consensus 132 caEw~~GG---~P~WL~~~-p~~~-~R~~d-------~~~~~~~~~~~~~-l~~~i~~~~~~~~~gGpII~~QiENEyg 197 (702)
-|--..-. -|.|+... |+.. .|... .++.-+++.|+.. +++.++++ .|=++|++-=+.
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 76422211 36777654 4432 23332 2355788888887 56666633 577889876554
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=90.49 E-value=5.2 Score=47.78 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=35.6
Q ss_pred HHHHHHCCCCEEEE-eeeCCCCCCCCCc--e----------ecccchhHHHHHHHHHHcCcEEEeec
Q 005319 74 IQKAKDGGLDVIQT-YVFWNGHEPTQGN--Y----------YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 74 l~k~ka~G~N~V~~-yv~W~~hEp~~G~--~----------df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
+.-+|+||+|+|+. .|. -| |..+. | .|....++.+|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~--e~-~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVM--EH-PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchh--cC-CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36689999999997 231 11 11111 1 13345799999999999999999874
No 58
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=90.04 E-value=6.5 Score=47.68 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEe-ee-------CCCCCCCC--CceecccchhHHHHHHHHHHcCcEEEeecCc
Q 005319 68 EMWPDLIQKAKDGGLDVIQTY-VF-------WNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~y-v~-------W~~hEp~~--G~~df~g~~dl~~fl~la~~~gL~vilr~GP 129 (702)
+.|++.|..+|++|+|+|++= |+ |..+-... =.-.|....+|.+||+.|+++||.|||..=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 347888999999999999872 21 22221000 0113555679999999999999999998533
No 59
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=90.01 E-value=0.48 Score=52.44 Aligned_cols=73 Identities=26% Similarity=0.237 Sum_probs=49.5
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 005319 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (702)
Q Consensus 56 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaE 134 (702)
+|=++.+...+.+..+..|++|++.|+..|-| ++|.|+...=+. ...+..++++|+++||.|++...|=+...
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~~ 74 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLKK 74 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHHT
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHHH
Confidence 45566666677888999999999999999888 999999643222 24788999999999999999998855443
No 60
>PRK05402 glycogen branching enzyme; Provisional
Probab=89.96 E-value=3.9 Score=49.58 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=36.9
Q ss_pred HHHHHHCCCCEEEE-eeeC-CC---CCCCCCce-----ecccchhHHHHHHHHHHcCcEEEeec
Q 005319 74 IQKAKDGGLDVIQT-YVFW-NG---HEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 74 l~k~ka~G~N~V~~-yv~W-~~---hEp~~G~~-----df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
|.-+|++|+|+|.. +|+= .. |--.+..| .|.+..||.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999998 4531 00 10011111 24456899999999999999999984
No 61
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.78 E-value=5.8 Score=47.93 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=40.5
Q ss_pred HHHHHHHCCCCEEEE-eee-------CCCCCCCCCce----ecccchhHHHHHHHHHHcCcEEEeecCccccc
Q 005319 73 LIQKAKDGGLDVIQT-YVF-------WNGHEPTQGNY----YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~-yv~-------W~~hEp~~G~~----df~g~~dl~~fl~la~~~gL~vilr~GPyica 133 (702)
.|.-+|++|+|+|+. +|+ |...- -|-| .|....++.+|++.|+++||.|||..=|-=++
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~ 345 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFP 345 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 467789999999988 342 32110 0111 34556799999999999999999985443333
No 62
>PRK14705 glycogen branching enzyme; Provisional
Probab=87.71 E-value=9.6 Score=48.65 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=38.0
Q ss_pred HHHHHHHCCCCEEEE-eee-------CCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 73 LIQKAKDGGLDVIQT-YVF-------WNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~-yv~-------W~~hEp~--~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.|.-+|+||+|+|+. +|+ |.+.--. .=.=.|....|+.+|++.|+++||.|||..
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999998 342 3211000 001134456899999999999999999873
No 63
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=85.36 E-value=1.4 Score=50.58 Aligned_cols=60 Identities=10% Similarity=0.258 Sum_probs=42.2
Q ss_pred ccHH---HHHHHHHHCCCCEEEEe-eeCCC-----CCCCC-Cce-------------ecccchhHHHHHHHHHHcCcEEE
Q 005319 68 EMWP---DLIQKAKDGGLDVIQTY-VFWNG-----HEPTQ-GNY-------------YFQDRYDLVRFIKLVQQAGLYVH 124 (702)
Q Consensus 68 ~~W~---~~l~k~ka~G~N~V~~y-v~W~~-----hEp~~-G~~-------------df~g~~dl~~fl~la~~~gL~vi 124 (702)
+.|. +.|.-+|++|+++|-+- ++-+. |--.+ .-| .|....||+++++.|++.||+||
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 4565 56777899999999883 44332 21111 112 23456799999999999999999
Q ss_pred eec
Q 005319 125 LRI 127 (702)
Q Consensus 125 lr~ 127 (702)
+..
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 985
No 64
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=85.22 E-value=0.98 Score=47.26 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCCEEEEeeeCCCCCCCCC--cee-------cccchhHHHHHHHHHHcCcEEEeec
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYY-------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~~hEp~~G--~~d-------f~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.+.|.-+|++|+|+|.+-=++......-| .-| |....++.++++.|++.||+|||..
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 46788899999999998544442211111 112 3345799999999999999999885
No 65
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=85.12 E-value=2.5 Score=48.78 Aligned_cols=65 Identities=17% Similarity=0.330 Sum_probs=42.7
Q ss_pred EEeeCCCCCcccHHHHHHHHH-HCCCCEEEEeeeCCCC-C--------CCCC--ceecccchhHHHHHHHHHHcCcEEEe
Q 005319 58 GSIHYPRSTPEMWPDLIQKAK-DGGLDVIQTYVFWNGH-E--------PTQG--NYYFQDRYDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 58 G~~Hy~r~~~~~W~~~l~k~k-a~G~N~V~~yv~W~~h-E--------p~~G--~~df~g~~dl~~fl~la~~~gL~vil 125 (702)
|.-|.....++.|+..|+.++ +.||..||+ |++. . ..+| .|||+ .||.+++...++||+-++
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~v 102 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFV 102 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEE
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEE
Confidence 444455556788999999886 899999987 3333 1 1123 29999 999999999999999877
Q ss_pred ecC
Q 005319 126 RIG 128 (702)
Q Consensus 126 r~G 128 (702)
..|
T Consensus 103 el~ 105 (486)
T PF01229_consen 103 ELG 105 (486)
T ss_dssp EE-
T ss_pred EEE
Confidence 765
No 66
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=84.96 E-value=1.8 Score=51.13 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCcee--------------cccchhHHHHHHHHHHcCcEEEee
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYY--------------FQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~d--------------f~g~~dl~~fl~la~~~gL~vilr 126 (702)
+.=.+.|.-+|+||+++|+. -=...-||.-+ |..-.||.+||+.|+++||-|||.
T Consensus 165 e~a~~llpYl~elG~T~IEL----MPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 165 ELAIELLPYLKELGITHIEL----MPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHhHHHHHhCCCEEEE----cccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 44467888999999999998 11222233322 223379999999999999999997
No 67
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=83.89 E-value=15 Score=38.74 Aligned_cols=98 Identities=17% Similarity=0.306 Sum_probs=61.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeec
Q 005319 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLK 145 (702)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi-lr~GPyicaEw~~GG~P~WL~ 145 (702)
..-|++.|+.++++|+..|++.+ +..| ..+...+++ ..++.++.++++++||.|. +.+++. +.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~~-------~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSAH-------RRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCCC-------ccCc----
Confidence 46699999999999999999943 2222 123344554 3478899999999999875 444310 1111
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 005319 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (702)
Q Consensus 146 ~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~ 190 (702)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~ 113 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQL 113 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEe
Confidence 122345555666666777776666 32 4566644
No 68
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=80.56 E-value=18 Score=39.82 Aligned_cols=138 Identities=14% Similarity=0.218 Sum_probs=86.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHH---HcCcEEEeecCcccccccCCCCCC
Q 005319 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ---QAGLYVHLRIGPYVCAEWNYGGFP 141 (702)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~---~~gL~vilr~GPyicaEw~~GG~P 141 (702)
..|+..+..++.+|+.|++.-..|-.|. .|.+-|++-++..- +.+|...|. |.+-.|. =
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~----~ 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWT----R 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhh----h
Confidence 3567789999999999999999988885 44556666665543 345544443 1122221 0
Q ss_pred eeeccCCCeEeecCChhHH--HHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccccCCcchHHHHHHHHHHHH
Q 005319 142 VWLKYVPGIEFRTDNGPFK--AAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAV 219 (702)
Q Consensus 142 ~WL~~~p~~~~R~~d~~~~--~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 219 (702)
.|-.....+.+- ..|. +..++.++.|++.+++..+.--+|-||+++=--.++ .+-++.++.+++.++
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 122222222111 1221 234677788889999877766788999988433222 235789999999999
Q ss_pred hcCCCcceEeec
Q 005319 220 GLNTGVPWVMCK 231 (702)
Q Consensus 220 ~~g~~vp~~~~~ 231 (702)
+.|+.-+.+...
T Consensus 186 ~~G~~giyii~~ 197 (345)
T PF14307_consen 186 EAGLPGIYIIAV 197 (345)
T ss_pred HcCCCceEEEEE
Confidence 999887655443
No 69
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=80.04 E-value=3.4 Score=47.56 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCCC---CceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ---GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~---G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~ 145 (702)
.++++++.||++|+++-|.-|.|+..=|.- +..+-.|..-...+|+...++||..++-. | =| .+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 478999999999999999999999987753 56889999889999999999999976653 1 23 3788876
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 005319 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (702)
Q Consensus 146 ~~-p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 191 (702)
+. -+-.-+..=..|.++++--|++...++| ....-|.+.|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 52 3321122224577777777888888888 44444666666554
No 70
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=79.65 E-value=3.5 Score=48.30 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCCEEEE-eee-------CCCC-----CCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 71 PDLIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~-yv~-------W~~h-----Ep~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.++|.-+|++|+|+|.. +|+ |... .+.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35688999999999988 342 2211 1111 24456799999999999999999984
No 71
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=79.63 E-value=19 Score=37.85 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHc-CcEEEe
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA-GLYVHL 125 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~-gL~vil 125 (702)
..|++.|+.+|++|++.|++-+....... .......+++++.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 67999999999999999999654321111 1111346899999999999 666554
No 72
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.62 E-value=24 Score=37.02 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=71.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeecc
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi-lr~GPyicaEw~~GG~P~WL~~ 146 (702)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++.++-++++++||.|. +.++.+ + .+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~------ 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RF------ 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---Cc------
Confidence 46999999999999999999532 2221 01122333 3478999999999999875 333210 0 00
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccc-cCCcchHHHHHHHHHHHHhcCCCc
Q 005319 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW-DIGAPGKAYAKWAAQMAVGLNTGV 225 (702)
Q Consensus 147 ~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 225 (702)
.+.+.|+...+...+.++++++.-+ .+ |.++|.+.--..+..... ..-..-.+.++.+.+++.+.|+.+
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1223455555555556666666666 22 345554421000000000 000011245666777777777653
No 73
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=76.67 E-value=3.9 Score=47.87 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHCCCCEEEEe-eeCCCCCCCCCcee----------cccchhHHHHHHHHHHcCcEEEeecCc
Q 005319 69 MWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~y-v~W~~hEp~~G~~d----------f~g~~dl~~fl~la~~~gL~vilr~GP 129 (702)
-+.+.|.-+|++|+|+|-+- ++=+-.. ...|+ |....+|.++++.|+++||+|||..=|
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 36678899999999999883 4322110 11232 445679999999999999999988433
No 74
>PRK12313 glycogen branching enzyme; Provisional
Probab=76.11 E-value=5.3 Score=47.65 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=37.5
Q ss_pred HHHHHHCCCCEEEE-eee-------CCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 74 IQKAKDGGLDVIQT-YVF-------WNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 74 l~k~ka~G~N~V~~-yv~-------W~~hEp~--~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
|.-+|++|+|+|.. +|+ |...-.. .=.-.|.+..+|.+|++.|+++||.|||..
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999997 442 2110000 000135566899999999999999999984
No 75
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=75.90 E-value=8 Score=32.14 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=23.2
Q ss_pred CcceEEEEEECCEEEEEEEcccCC--CeeEEe
Q 005319 508 SAGHALQVFINGQLSGTVYGSLEN--PKLTFS 537 (702)
Q Consensus 508 ~~~D~a~VfVng~~vGt~~~~~~~--~~~~~~ 537 (702)
...|.|-||++++++|+++++... .++.|+
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~ 56 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQ 56 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEE
Confidence 468999999999999999987543 344443
No 76
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=75.86 E-value=4.9 Score=47.12 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEe-eeCCCCCCCCCce--------ecccc----hhHHHHHHHHHHcCcEEEeecCcccccc
Q 005319 68 EMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNY--------YFQDR----YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~y-v~W~~hEp~~G~~--------df~g~----~dl~~fl~la~~~gL~vilr~GPyicaE 134 (702)
+.=++.|..|+.+.||.|+.| ..|-+|.|-|+.= |+.++ .-+..+|+.|++.|+.++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456789999999999999999 8899999987543 22332 4688999999999999985422222222
Q ss_pred c--CCCCCCeeec
Q 005319 135 W--NYGGFPVWLK 145 (702)
Q Consensus 135 w--~~GG~P~WL~ 145 (702)
. ..|=.|.|-+
T Consensus 198 ~~~~~gv~~eW~l 210 (559)
T PF13199_consen 198 NYEEDGVSPEWGL 210 (559)
T ss_dssp T--S--SS-GGBE
T ss_pred CcccccCCchhhh
Confidence 2 2455688875
No 77
>PRK01060 endonuclease IV; Provisional
Probab=75.75 E-value=71 Score=33.49 Aligned_cols=83 Identities=11% Similarity=0.151 Sum_probs=53.7
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE---EeecCcccccccCCCCCCeeecc
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV---HLRIGPYVCAEWNYGGFPVWLKY 146 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~v---ilr~GPyicaEw~~GG~P~WL~~ 146 (702)
+++.|++++++|++.|+..+. +-+.-..+.++- .+++++-++++++||.+ .+ -+||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~------------~-- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL------------I-- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE------------e--
Confidence 889999999999999999542 112111222222 26888999999999973 22 23332 1
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 147 ~p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
.+-+.|+..+++..+.+++.++..+
T Consensus 75 ----nl~~~d~~~r~~s~~~~~~~i~~A~ 99 (281)
T PRK01060 75 ----NLGNPNKEILEKSRDFLIQEIERCA 99 (281)
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1334567777777777777666666
No 78
>PLN02960 alpha-amylase
Probab=75.75 E-value=5.7 Score=48.63 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEE-eee-------CCCCCCCC--CceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 71 PDLIQKAKDGGLDVIQT-YVF-------WNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~-yv~-------W~~hEp~~--G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
++.|.-+|++|+|+|+. .|+ |...-... =.-.|....+|.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999998 343 32110000 00123455799999999999999999984
No 79
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=75.52 E-value=5 Score=47.59 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCEEEE-eee---------------CCCCC-----CCCCcee----cc--cchhHHHHHHHHHHcCcEEE
Q 005319 72 DLIQKAKDGGLDVIQT-YVF---------------WNGHE-----PTQGNYY----FQ--DRYDLVRFIKLVQQAGLYVH 124 (702)
Q Consensus 72 ~~l~k~ka~G~N~V~~-yv~---------------W~~hE-----p~~G~~d----f~--g~~dl~~fl~la~~~gL~vi 124 (702)
+.|.-+|++|+|+|.+ +|+ |...- |. +.|- +- ...++.+|++.|++.||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999998 443 22221 10 0110 10 13689999999999999999
Q ss_pred eec
Q 005319 125 LRI 127 (702)
Q Consensus 125 lr~ 127 (702)
|..
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 984
No 80
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=75.23 E-value=11 Score=41.18 Aligned_cols=112 Identities=17% Similarity=0.261 Sum_probs=70.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEe-------eeCCCCCCCCCceecc--cchhHHHHHHHHHHcCcEEEeecCcccccccC
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTY-------VFWNGHEPTQGNYYFQ--DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWN 136 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~y-------v~W~~hEp~~G~~df~--g~~dl~~fl~la~~~gL~vilr~GPyicaEw~ 136 (702)
.++.-++.|+.+|+.|+|+|-+= |.+....|..-+..-. ...|+.++++.++++|||+|.|.=-+- ...-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk-D~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK-DPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec-ChHH
Confidence 34567889999999999998663 4454433333222111 136999999999999999999963211 0000
Q ss_pred CCCCCeeeccC-CCeEeecCC-----hhHHHHHHHHHHHHHHHHHhcc
Q 005319 137 YGGFPVWLKYV-PGIEFRTDN-----GPFKAAMHKFTEKIVSMMKAEK 178 (702)
Q Consensus 137 ~GG~P~WL~~~-p~~~~R~~d-----~~~~~~~~~~~~~l~~~i~~~~ 178 (702)
..--|.|-.+. .+-..|..+ .+|.+++.+|.-.|++.+++..
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 11146665422 222233221 3578899999999999998543
No 81
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=75.01 E-value=8 Score=42.23 Aligned_cols=72 Identities=25% Similarity=0.301 Sum_probs=58.8
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCc-eecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 005319 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (702)
Q Consensus 56 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~-~df~g~~dl~~fl~la~~~gL~vilr~GPyicaE 134 (702)
+|=++.+.|.+.+.=..-|++|...|+..|-| ++|.|++.. --|. -+.++++.|+++|++||+..-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45567777888888888999999999998888 999998742 1233 678999999999999999998877555
No 82
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=74.23 E-value=10 Score=48.71 Aligned_cols=91 Identities=15% Similarity=0.259 Sum_probs=57.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-eee-CCCC-CC--CCCcee----c----ccchhHHHHHHHHHHc-CcEEEeecCccc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQT-YVF-WNGH-EP--TQGNYY----F----QDRYDLVRFIKLVQQA-GLYVHLRIGPYV 131 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~-yv~-W~~h-Ep--~~G~~d----f----~g~~dl~~fl~la~~~-gL~vilr~GPyi 131 (702)
+-+.|+++|..+|++|+|+|.. +++ =... .| ..+.+. | .+..|+.++++.|++. ||++|+..=
T Consensus 130 ~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV--- 206 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV--- 206 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee---
Confidence 4477999999999999999987 333 1110 00 012221 3 3667999999999995 999998741
Q ss_pred ccccCCCCC-CeeeccCCCeEeecCChhHHHH
Q 005319 132 CAEWNYGGF-PVWLKYVPGIEFRTDNGPFKAA 162 (702)
Q Consensus 132 caEw~~GG~-P~WL~~~p~~~~R~~d~~~~~~ 162 (702)
|+.-+. =.||.+.|+.-....+.++|++
T Consensus 207 ---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~ 235 (1464)
T TIGR01531 207 ---FNHTANNSPWLLEHPEAAYNCITSPHLRP 235 (1464)
T ss_pred ---ecccccCCHHHHhChHhhcCCCCCchhhh
Confidence 222221 2477777765444445555543
No 83
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=73.09 E-value=48 Score=37.15 Aligned_cols=91 Identities=13% Similarity=0.151 Sum_probs=52.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEe----eeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCC
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTY----VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGF 140 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~y----v~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi-lr~GPyicaEw~~GG~ 140 (702)
++....+++++++++|+..|+.. ++|..-+. +-..+++++-+++++.||.|. +-++-+....+..|+
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~-------e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~- 101 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQ-------ERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG- 101 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChh-------HHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC-
Confidence 34457799999999999999863 12211100 002357899999999999975 343311111222222
Q ss_pred CeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 141 PVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 141 P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
+-+.|+..+++.-+.+++.++.-+
T Consensus 102 -----------las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 102 -----------FTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 233466655554444555555555
No 84
>PRK10785 maltodextrin glucosidase; Provisional
Probab=72.55 E-value=7.7 Score=46.00 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=40.6
Q ss_pred HHHHHHHHHCCCCEEEE-eeeCC--CCCCCCCce-----ecccchhHHHHHHHHHHcCcEEEeec
Q 005319 71 PDLIQKAKDGGLDVIQT-YVFWN--GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~-yv~W~--~hEp~~G~~-----df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.+.|.-+|++|+|+|-+ +||=+ .|--....| .|.+..||+++++.|++.||+|||..
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788899999999998 45532 111111111 14456899999999999999999874
No 85
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=71.85 E-value=8.1 Score=45.35 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCEEEE-eeeCCCCCCC-CCcee----------cccchhHHHHHHHHHHcCcEEEeec
Q 005319 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPT-QGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~-yv~W~~hEp~-~G~~d----------f~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
+.++|.-+|++|+++|-+ +|+-+ |. ...|| |....||.++++.|+++||+||+..
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 557889999999999987 34422 21 11232 4456799999999999999999874
No 86
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=71.63 E-value=6.2 Score=41.49 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=39.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
+...++-|+.+|++||++|++ +.|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 566789999999999999998 34555554 34777999999999999999998
No 87
>PRK09505 malS alpha-amylase; Reviewed
Probab=71.52 E-value=8.2 Score=46.47 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCCEEEE-eeeCCCCCCC----CC------------------ceecccchhHHHHHHHHHHcCcEEEee
Q 005319 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPT----QG------------------NYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~-yv~W~~hEp~----~G------------------~~df~g~~dl~~fl~la~~~gL~vilr 126 (702)
+.+.|.-+|+||+|+|-+ .++=+.|... .| .-.|....+++++++.|+++||+||+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567888999999999986 4543333211 11 112445679999999999999999998
Q ss_pred cC
Q 005319 127 IG 128 (702)
Q Consensus 127 ~G 128 (702)
.=
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 53
No 88
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=70.84 E-value=6.1 Score=46.15 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHCCCCEEEEe-eeCCCCCCC-CCcee----------cccchhHHHHHHHHHHcCcEEEee
Q 005319 69 MWPDLIQKAKDGGLDVIQTY-VFWNGHEPT-QGNYY----------FQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~y-v~W~~hEp~-~G~~d----------f~g~~dl~~fl~la~~~gL~vilr 126 (702)
-+.+.|.-+|++|+|+|-+- |+ .. +. ...|| |....|+.++++.|++.||+|||.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~-~~--~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFF-QS--PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCc-CC--CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 36778999999999999873 33 11 11 12222 445679999999999999999986
No 89
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=70.22 E-value=2.1 Score=50.16 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=27.3
Q ss_pred CccccccCCCCCCccCCCCchhHHHHHHHH
Q 005319 318 FVATSYDYDAPIDEYGLLNEPKWGHLRDLH 347 (702)
Q Consensus 318 ~~~tSYDYdApl~E~G~~~~~Ky~~lr~l~ 347 (702)
.++|||||+||+.|+|+++++||.++|+..
T Consensus 324 ~~hts~d~~ep~lv~gd~~~~kyg~~~~~C 353 (649)
T KOG0496|consen 324 PLHTSYDYCEPALVAGDITTAKYGNLREAC 353 (649)
T ss_pred cchhhhhhcCccccccCcccccccchhhHH
Confidence 589999999999999998899999999544
No 90
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=69.87 E-value=15 Score=41.27 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=43.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
..+.|+++++.+|++||+...+ |+.- ...+.- ..|...++.|++.|+++++-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaL----Nig~--~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFAL----NIGS--SDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----eccc--CCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7788999999999999999998 5542 222333 378899999999999999987
No 91
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=69.24 E-value=71 Score=33.32 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi 124 (702)
..+++.|+.++++|++.|++..-.. |+-.+ +++ ..+++++-++++++||.|.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEE
Confidence 3599999999999999999832110 11011 121 2478899999999999975
No 92
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=68.20 E-value=11 Score=36.93 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=68.8
Q ss_pred HHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEee
Q 005319 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFR 153 (702)
Q Consensus 74 l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R 153 (702)
|+.++++|+..|+............ ...++++.++++++||.+..--.+.. +.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---ccc----------cccccc
Confidence 5789999999999965533222211 34789999999999999653221111 100 000123
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccc--cCccCcccc-CCcchHHHHHHHHHHHHhcCCC
Q 005319 154 TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE--NEFGPVEWD-IGAPGKAYAKWAAQMAVGLNTG 224 (702)
Q Consensus 154 ~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiE--NEyg~~~~~-~~~~~~~y~~~l~~~~~~~g~~ 224 (702)
+..+. .+...+.+.+.++..+ .+ |.+.|.+..- +........ .-+.-.+.++.|.+.+++.|+.
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce
Confidence 33334 6666667777777777 32 4566777754 222211000 0001234566666777777754
No 93
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=67.17 E-value=2.4 Score=43.92 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr 126 (702)
-...+.+.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5678899999999999999996655444333344 8999999999999999999
No 94
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=65.37 E-value=14 Score=45.29 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=45.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCC---Cce-------ecccchhHHHHHHHHHHcCcEEEeecCcc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ---GNY-------YFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~---G~~-------df~g~~dl~~fl~la~~~gL~vilr~GPy 130 (702)
+-+.+.+.|.-++++|+++|-+-=++....... ... .|.+..++.+|++.|+++||.||+..=|-
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpN 88 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPN 88 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 344588999999999999997732222111111 111 24578899999999999999999986553
No 95
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=64.67 E-value=36 Score=36.79 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=43.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeee----CCCCCCC----CCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPT----QGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~----W~~hEp~----~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
+.+.-++.++.|...|+|.+..|+- +.-+ |+ +|.|.- .++.++++.|++.||.||..+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~-p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGE-PEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCC-cccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC
Confidence 4567899999999999999998753 3222 21 233333 499999999999999999765
No 96
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=64.65 E-value=12 Score=32.69 Aligned_cols=49 Identities=20% Similarity=0.362 Sum_probs=33.7
Q ss_pred cEEeCCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeec-CCCccEEEEEEecCCCc
Q 005319 503 LLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKL-RPGVNKISLLSTSVGLP 559 (702)
Q Consensus 503 ~L~i~~~~D~a~VfVng~~vGt~~~~~~~~~~~~~~~~~l-~~g~~~L~ILVEnmGrv 559 (702)
.|++.+-....+-||||+++|+... ..++.+ .+ ..|.++|.+ ++..|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~---~~~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQP---GHQLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCC---CCeEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 4555544669999999999987633 223333 23 568888877 7888874
No 97
>PLN02361 alpha-amylase
Probab=64.53 E-value=15 Score=41.41 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCCEEEEeeeCCCCCC---CCCc-ee----cccchhHHHHHHHHHHcCcEEEeec
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWNGHEP---TQGN-YY----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~~hEp---~~G~-~d----f~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.+.|.-+|++|+++|-+.=+.....+ .+.. |+ |....+|+++++.|++.||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 46677889999999988533322111 1211 22 4456799999999999999999875
No 98
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=64.48 E-value=26 Score=42.14 Aligned_cols=126 Identities=14% Similarity=0.107 Sum_probs=72.8
Q ss_pred EeEEEEEEeeCCC-CCc----ccHHHHHHHHHHCCCCEEEE---------------eeeCCCCCCCCCcee-cccchhHH
Q 005319 52 KRILISGSIHYPR-STP----EMWPDLIQKAKDGGLDVIQT---------------YVFWNGHEPTQGNYY-FQDRYDLV 110 (702)
Q Consensus 52 p~~l~sG~~Hy~r-~~~----~~W~~~l~k~ka~G~N~V~~---------------yv~W~~hEp~~G~~d-f~g~~dl~ 110 (702)
+.+++...+-|-. ..| +.-...|+.+|++|+|||-. |++|. |= ||+-| |+ -|
T Consensus 313 ~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~-~l--p~r~d~f~---~~- 385 (671)
T PRK14582 313 PQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNR-LL--PMRADLFN---RV- 385 (671)
T ss_pred CEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCcc-cc--ccccCCcC---HH-
Confidence 4455544444433 233 34677899999999999844 55662 22 22222 22 12
Q ss_pred HHHHHHHHcCcEEEeecCccccc---------ccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccc
Q 005319 111 RFIKLVQQAGLYVHLRIGPYVCA---------EWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQ 181 (702)
Q Consensus 111 ~fl~la~~~gL~vilr~GPyica---------Ew~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~ 181 (702)
...++.+.|+.|..+-.||-.. +++..+-|.-.. |+--.| =.+|..++++|++.|.+-|+++
T Consensus 386 -aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~---- 456 (671)
T PRK14582 386 -AWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH---- 456 (671)
T ss_pred -HHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh----
Confidence 3455899999999999998532 121111121111 000112 2356788999999999988843
Q ss_pred cCCCceEEeccccCc
Q 005319 182 TQGGPIILSQIENEF 196 (702)
Q Consensus 182 ~~gGpII~~QiENEy 196 (702)
.+|=++|...+-
T Consensus 457 ---~~~dGilf~Dd~ 468 (671)
T PRK14582 457 ---AAFDGILFHDDA 468 (671)
T ss_pred ---CCCceEEecccc
Confidence 256666765554
No 99
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=64.17 E-value=14 Score=39.91 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=48.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCC-CCceecccc--hhHHHHHHHHHHcCcEEEeecCccccc
Q 005319 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (702)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~-~G~~df~g~--~dl~~fl~la~~~gL~vilr~GPyica 133 (702)
...+..++.++++|+.|+..=.+.+-..++... -+.|.|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 356677899999999997654444333333322 135655532 389999999999999999998888754
No 100
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=64.14 E-value=14 Score=38.64 Aligned_cols=52 Identities=12% Similarity=0.332 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GP 129 (702)
...++-++..|++||++|++ +.|..+++ ..+..++|+.++++||.|+-..|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 55677888999999999998 35666655 347889999999999999998874
No 101
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=63.90 E-value=52 Score=35.51 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=52.8
Q ss_pred CCCCcccHHHHHHHHHHCCCC--EEEEeeeCCCCCCCCCceeccc--chhHHHHHHHHHHcCcEEEeecCcccccc
Q 005319 63 PRSTPEMWPDLIQKAKDGGLD--VIQTYVFWNGHEPTQGNYYFQD--RYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (702)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N--~V~~yv~W~~hEp~~G~~df~g--~~dl~~fl~la~~~gL~vilr~GPyicaE 134 (702)
.....+.-++.++++++.|+. +|-+=..|. ..-|.|.|+- --|..++++..++.|+++++..=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 346677789999999999965 555544553 3457666653 24899999999999999999999999754
No 102
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=63.73 E-value=11 Score=48.45 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEE-eeeCCCCCCC---CC-----cee----------cc--cchhHHHHHHHHHHcCcEEEeec
Q 005319 72 DLIQKAKDGGLDVIQT-YVFWNGHEPT---QG-----NYY----------FQ--DRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 72 ~~l~k~ka~G~N~V~~-yv~W~~hEp~---~G-----~~d----------f~--g~~dl~~fl~la~~~gL~vilr~ 127 (702)
+.|.-+|++|+|+|.. +|+=+..|.. .| -|+ |. ...+++++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999998 4552222211 11 022 33 56799999999999999999984
No 103
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=63.12 E-value=11 Score=45.33 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=37.2
Q ss_pred HHHHHHHCCCCEEEE-eeeCCCCC---CCCC-----cee----------c---ccchhHHHHHHHHHHcCcEEEeec
Q 005319 73 LIQKAKDGGLDVIQT-YVFWNGHE---PTQG-----NYY----------F---QDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~-yv~W~~hE---p~~G-----~~d----------f---~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.|.-+|++|+|+|.. +|+=...+ ...| -|| | ....++.++++.|++.||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999998 45411111 1111 111 1 124689999999999999999984
No 104
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=62.93 E-value=25 Score=28.62 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 005319 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vil 125 (702)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..++.|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4557788999999999999999732 333 58887765 5778999999999988754
No 105
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=62.67 E-value=14 Score=45.93 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 005319 107 YDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 107 ~dl~~fl~la~~~gL~vilr~ 127 (702)
.+++++++.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999974
No 106
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=61.90 E-value=65 Score=33.62 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=55.0
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCCCCCce-ecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCC
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVP 148 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~-df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p 148 (702)
-++.|+.+.++|++.|+. ...+|..-.- +++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 447899999999999999 5555543210 222 236889999999999986542 3432
Q ss_pred CeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 149 GIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 149 ~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
+.+.+.|+..+++..+++++.++..+
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~ 94 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE 94 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12345567777776677777776666
No 107
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=61.68 E-value=45 Score=35.50 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=61.5
Q ss_pred ceeEEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecc--cchhHHHHH
Q 005319 36 KASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLVRFI 113 (702)
Q Consensus 36 ~~~v~~d~~~f~~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~--g~~dl~~fl 113 (702)
...|.+ ..+.+.+.|++++.|=.--. .++.-.+..+++|++|+..++.|.+= |+---+.|. |...+..+-
T Consensus 13 ~~~~~~--~~~~~g~~~~~~iaGPCsie--~~~~~~~~A~~lk~~g~~~~r~~~~k----pRTs~~s~~G~g~~gl~~l~ 84 (266)
T PRK13398 13 KTIVKV--GDVVIGGEEKIIIAGPCAVE--SEEQMVKVAEKLKELGVHMLRGGAFK----PRTSPYSFQGLGEEGLKILK 84 (266)
T ss_pred CcEEEE--CCEEEcCCCEEEEEeCCcCC--CHHHHHHHHHHHHHcCCCEEEEeeec----CCCCCCccCCcHHHHHHHHH
Confidence 334444 34777777888888843221 46667788999999999999998765 332234565 578899999
Q ss_pred HHHHHcCcEEEeec
Q 005319 114 KLVQQAGLYVHLRI 127 (702)
Q Consensus 114 ~la~~~gL~vilr~ 127 (702)
+.|++.||.++-.|
T Consensus 85 ~~~~~~Gl~~~te~ 98 (266)
T PRK13398 85 EVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999988876
No 108
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=61.60 E-value=80 Score=35.66 Aligned_cols=88 Identities=20% Similarity=0.311 Sum_probs=57.0
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCC----Cceecccc---hhHHHHHHHHHHcCcEEEeecCcccccc
Q 005319 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDR---YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (702)
Q Consensus 62 y~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~----G~~df~g~---~dl~~fl~la~~~gL~vilr~GPyicaE 134 (702)
|+.+..+.-.+.+++++++|++.+.+=--|....... |.+.-+-. .-|..+++.+++.||+.=|+..|-+++.
T Consensus 52 ~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 52 YFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp TTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred CcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccc
Confidence 5667777788899999999999887776786542222 33322211 2499999999999999988888865542
Q ss_pred cC--CCCCCeeeccCCC
Q 005319 135 WN--YGGFPVWLKYVPG 149 (702)
Q Consensus 135 w~--~GG~P~WL~~~p~ 149 (702)
=. .-..|.|+...++
T Consensus 132 ~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 132 DSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSCHCCSSBGGBTCCTT
T ss_pred hhHHHHhCccceeecCC
Confidence 11 2247999987554
No 109
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=60.16 E-value=20 Score=44.27 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=46.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCC------cee-------cccchhHHHHHHHHHHcCcEEEeecCcccc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG------NYY-------FQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G------~~d-------f~g~~dl~~fl~la~~~gL~vilr~GPyic 132 (702)
+-+.+.+.|.-++++|+|+|-.-=+. +..+| ..| |.+..++.+|++.|+++||.||+..=|.=+
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~---~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~ 94 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL---AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHM 94 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc---cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 34568899999999999999873222 22222 122 346789999999999999999998655433
No 110
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=59.93 E-value=18 Score=47.59 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCC---ce---e-------cccchhHHHHHHHHHHcCcEEEeecCc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG---NY---Y-------FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G---~~---d-------f~g~~dl~~fl~la~~~gL~vilr~GP 129 (702)
+-+.|.+.|.-+|++|+|+|-+-=++. ..+| -| | |.+..+++++++.|+++||.||+..=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~---a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILK---ARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcC---CCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 445699999999999999998742232 2222 12 2 457789999999999999999998544
No 111
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.29 E-value=72 Score=33.48 Aligned_cols=97 Identities=18% Similarity=0.348 Sum_probs=57.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeecc
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi-lr~GPyicaEw~~GG~P~WL~~ 146 (702)
..|++.++.++++|+..|+..+. ..++ ....++++ ..+++++-++++++||.|. +.++... .++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~~-------~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAHR-------RFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEeccccc-------ccC-----
Confidence 35999999999999999999432 1111 01112333 2368899999999999875 3332100 010
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 005319 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (702)
Q Consensus 147 ~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~ 190 (702)
+-+.|+.-++...+.+++.++..+ . =|.++|.+
T Consensus 86 -----~~~~~~~~r~~~~~~~~~~i~~a~--~----lG~~~i~~ 118 (283)
T PRK13209 86 -----LGSEDDAVRAQALEIMRKAIQLAQ--D----LGIRVIQL 118 (283)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--H----cCCCEEEE
Confidence 112345555565666666666666 2 24566654
No 112
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=58.93 E-value=31 Score=37.24 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeee----CCCCCC----------------CCCceecccchhHHHHHHHHHHcCcEEEe
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------TQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~----W~~hEp----------------~~G~~df~g~~dl~~fl~la~~~gL~vil 125 (702)
+.+..++.|+.|...++|++..++- |.+--+ ..|.|.- .++.++++.|++.|+.||.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEE
Confidence 6788999999999999999999877 754321 1223443 4999999999999999997
Q ss_pred ec
Q 005319 126 RI 127 (702)
Q Consensus 126 r~ 127 (702)
.+
T Consensus 91 Ei 92 (303)
T cd02742 91 EI 92 (303)
T ss_pred ec
Confidence 64
No 113
>PRK12677 xylose isomerase; Provisional
Probab=58.86 E-value=91 Score=35.01 Aligned_cols=90 Identities=11% Similarity=0.112 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecc---cchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCee
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVW 143 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~---g~~dl~~fl~la~~~gL~vi-lr~GPyicaEw~~GG~P~W 143 (702)
-.+++.+++++++|+..|+.. .+..--|+.+ -.+.++++.+++++.||.|. +-|.-+.+..+..|+
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~---- 100 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA---- 100 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc----
Confidence 347899999999999999882 1111112221 11358899999999999976 444322222222222
Q ss_pred eccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 144 L~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 --------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 --------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334566666665555666555555
No 114
>PLN02877 alpha-amylase/limit dextrinase
Probab=58.08 E-value=19 Score=44.86 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 005319 107 YDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 107 ~dl~~fl~la~~~gL~vilr~ 127 (702)
++++++++.|+++||.|||..
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999984
No 115
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=57.93 E-value=42 Score=37.02 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=61.1
Q ss_pred ceeEEEecCcEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceeccc--chhHHHH
Q 005319 36 KASVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRF 112 (702)
Q Consensus 36 ~~~v~~d~~~f~~dG~p~~l~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g--~~dl~~f 112 (702)
...|.+ ..+.+.|.++.++.| +--+ .++.-.+..+.+|++|.+.++.|+|= |+---|.|.| ..-|..+
T Consensus 79 ~t~v~~--~~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L 149 (335)
T PRK08673 79 PTVVKV--GDVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLL 149 (335)
T ss_pred CCEEEE--CCEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHH
Confidence 344555 347777888888988 3222 45566778888999999999999884 4444467765 5678888
Q ss_pred HHHHHHcCcEEEeec
Q 005319 113 IKLVQQAGLYVHLRI 127 (702)
Q Consensus 113 l~la~~~gL~vilr~ 127 (702)
.+.|++.||.++-.+
T Consensus 150 ~~~~~~~Gl~v~tev 164 (335)
T PRK08673 150 AEAREETGLPIVTEV 164 (335)
T ss_pred HHHHHHcCCcEEEee
Confidence 888999999988876
No 116
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=57.42 E-value=1.7e+02 Score=30.82 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCce--eccc--chhHHHHHHHHHHcCcEEEeecCccc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY--YFQD--RYDLVRFIKLVQQAGLYVHLRIGPYV 131 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~--df~g--~~dl~~fl~la~~~gL~vilr~GPyi 131 (702)
..+..++.++.+++.|+..=.+.+-+.+.+. .+.| +|+- --|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5566788999999999986555555444443 3555 4432 24899999999999999999988877
No 117
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=56.81 E-value=2.3e+02 Score=31.66 Aligned_cols=86 Identities=15% Similarity=0.217 Sum_probs=50.2
Q ss_pred HHHcCcEEEeecCcccccccCCCCCCeeeccCCCe------Eeec-CChhHHHHHHHHHHHHHHHHHhccccccCCCceE
Q 005319 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI------EFRT-DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (702)
Q Consensus 116 a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~------~~R~-~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII 188 (702)
+-..|+.|+.-| |+ .|+|+.+.-.+ +||. ..+.|-++..+|+. .++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~----~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVL----EMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHHH----HHH------hCCCcee
Confidence 456788888887 54 89999764221 2332 23344443333332 233 5677999
Q ss_pred EeccccCccCccccCCc---chHHHHHHHHHHHHhcC
Q 005319 189 LSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGLN 222 (702)
Q Consensus 189 ~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 222 (702)
+..|.||...-. .|+. ...+.++.+++-+....
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 999999976321 1222 24566777777665544
No 118
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=56.63 E-value=1.3e+02 Score=32.23 Aligned_cols=119 Identities=16% Similarity=0.071 Sum_probs=79.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 005319 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (702)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 146 (702)
-+.-+.+|+.+|.-+. .||+|- +...-|+.++.+|.+.|++|+|.+ |+..
T Consensus 62 a~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~td 111 (305)
T COG5309 62 ADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPTD 111 (305)
T ss_pred HHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eecc
Confidence 4567889999999887 999984 122368899999999999999875 3321
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccccCCcchHHHHHHHHHHHHhcCCCcc
Q 005319 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVP 226 (702)
Q Consensus 147 ~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp 226 (702)
++ . ..+++ .++..+. +. ..--.|..+-|.||-=.-.+.-...-.+|+...|.++++.|.++|
T Consensus 112 --d~-------~--~~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gp 173 (305)
T COG5309 112 --DI-------H--DAVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGP 173 (305)
T ss_pred --ch-------h--hhHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 11 1 12222 2333333 21 222478899999996322111111235799999999999999999
Q ss_pred eEeecCC
Q 005319 227 WVMCKQD 233 (702)
Q Consensus 227 ~~~~~~~ 233 (702)
+.+.+.+
T Consensus 174 V~T~dsw 180 (305)
T COG5309 174 VTTVDSW 180 (305)
T ss_pred eeecccc
Confidence 9887765
No 119
>PRK03705 glycogen debranching enzyme; Provisional
Probab=56.33 E-value=19 Score=43.36 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCEEEE-eeeCCCCCCCC---C-----cee----------ccc-----chhHHHHHHHHHHcCcEEEeec
Q 005319 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-----NYY----------FQD-----RYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~-yv~W~~hEp~~---G-----~~d----------f~g-----~~dl~~fl~la~~~gL~vilr~ 127 (702)
.|.-+|++|+|+|.. +|+=...++.. | -|| |.. ..+++++++.|++.||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999998 34411111110 1 011 222 2579999999999999999984
No 120
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=54.57 E-value=79 Score=31.18 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=31.0
Q ss_pred CcEEeCCcceEEEEEECCEEEEEEE----cccCCCe---eEEeeeeecCCCccEEEEEEecCCC
Q 005319 502 PLLTIWSAGHALQVFINGQLSGTVY----GSLENPK---LTFSKNVKLRPGVNKISLLSTSVGL 558 (702)
Q Consensus 502 ~~L~i~~~~D~a~VfVng~~vGt~~----~~~~~~~---~~~~~~~~l~~g~~~L~ILVEnmGr 558 (702)
..|.|... .+..+||||+.||.-. .+.-.+. .++.+.--|+.|.|.|.|+|-+...
T Consensus 6 A~l~isa~-g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISAL-GRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEEE-SEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEeC-eeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 35666644 4678999999998754 1111121 2333322367799999999977544
No 121
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=54.13 E-value=26 Score=37.84 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=41.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCC---CCCCCCceec-c----cchhHHHHHHHHHHcCcEEEeec
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNG---HEPTQGNYYF-Q----DRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~---hEp~~G~~df-~----g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.+..-.++++.+|..|+|++-.-+==.. -=|....+.= . -..|+..||+.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 3455678999999999999876332111 1122221110 0 01399999999999999999996
No 122
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=53.64 E-value=23 Score=45.04 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 005319 107 YDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 107 ~dl~~fl~la~~~gL~vilr~ 127 (702)
.++.++++.|+++||.|||..
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999984
No 123
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=52.91 E-value=68 Score=33.69 Aligned_cols=97 Identities=19% Similarity=0.351 Sum_probs=63.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEeeeCCCCCCCC--CceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeee
Q 005319 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 144 (702)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~--G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL 144 (702)
.-.|+++|..+|++||+-|+. +.-|..+ -+.||+. .-...+.+++.+.|+. . |-+| |
T Consensus 17 ~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv~----i-pSmC-----------l 75 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGVR----I-PSMC-----------L 75 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCCC----c-cchh-----------h
Confidence 456999999999999999999 7777655 4677873 3455788888999983 2 2222 1
Q ss_pred ccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 005319 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (702)
Q Consensus 145 ~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Qi 192 (702)
..+...-+-+.|+.-.+.....+.+-+..-. .+ .|=-+|+
T Consensus 76 SaHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQL 115 (287)
T COG3623 76 SAHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQL 115 (287)
T ss_pred hhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEee
Confidence 1111112457788887777666666444333 22 3555676
No 124
>PLN00196 alpha-amylase; Provisional
Probab=51.78 E-value=35 Score=38.89 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCCCEEEEe-eeCCC--CCCCCCc-ee-----cccchhHHHHHHHHHHcCcEEEeecCc
Q 005319 71 PDLIQKAKDGGLDVIQTY-VFWNG--HEPTQGN-YY-----FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~y-v~W~~--hEp~~G~-~d-----f~g~~dl~~fl~la~~~gL~vilr~GP 129 (702)
.+.|.-+|++|+++|-+. ++=+. |--.+.. |+ |....+|+++++.|++.||+||+..=+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~ 114 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVI 114 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 477888899999999885 33221 1111211 22 334579999999999999999998533
No 125
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=51.77 E-value=21 Score=31.14 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=26.1
Q ss_pred cCCCceEEeccccC-ccCccccC----Cc-chHHHHHHHHHH---HHhcCCCcceEe
Q 005319 182 TQGGPIILSQIENE-FGPVEWDI----GA-PGKAYAKWAAQM---AVGLNTGVPWVM 229 (702)
Q Consensus 182 ~~gGpII~~QiENE-yg~~~~~~----~~-~~~~y~~~l~~~---~~~~g~~vp~~~ 229 (702)
++...|.+|+|-|| -++....+ +. ....+.+||+++ +|+.+...|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 45578999999999 55222101 11 234566666665 566788888643
No 126
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=51.57 E-value=30 Score=35.42 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 74 l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
..++|++|++.|-+ +|-|.+ |..+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 46799999999999 666665 5555 69999999999999999987
No 127
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=50.37 E-value=15 Score=30.48 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=16.4
Q ss_pred cEEeCCcceEEEEEECCEEEEE
Q 005319 503 LLTIWSAGHALQVFINGQLSGT 524 (702)
Q Consensus 503 ~L~i~~~~D~a~VfVng~~vGt 524 (702)
.|.|.+.=.-|.|||||+++|.
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~ 24 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGT 24 (71)
T ss_pred EEEEEEECCCCEEEECCEEecc
Confidence 3555544456899999999994
No 128
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=50.09 E-value=29 Score=35.87 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vil 125 (702)
-+++.+++++++|++.|+...++ + .++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~------------~--~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY------------D--WDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc------------c--CCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984321 1 2578899999999999864
No 129
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=49.51 E-value=64 Score=35.71 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=45.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeee----CCCCC----------------------------CCCCceecccchhHHHHH
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE----------------------------PTQGNYYFQDRYDLVRFI 113 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~----W~~hE----------------------------p~~G~~df~g~~dl~~fl 113 (702)
+.+..++.|..|...++|+...++- |.+-- +..|.|-- .|+.+++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHHH
Confidence 6888999999999999999998762 32211 11233433 4999999
Q ss_pred HHHHHcCcEEEeec
Q 005319 114 KLVQQAGLYVHLRI 127 (702)
Q Consensus 114 ~la~~~gL~vilr~ 127 (702)
+.|++.|+.||..+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999999774
No 130
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=49.22 E-value=50 Score=35.39 Aligned_cols=114 Identities=21% Similarity=0.300 Sum_probs=67.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceeccc---chhHHHHHHHHHHcCcEEEeecCcccccccCCCCCC-
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD---RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFP- 141 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g---~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P- 141 (702)
.-+..++-+..+.++|+..|-+=.-|...+ ....+||+. ..||.++++-|++.|..|+|+- -|+.||-.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~------~~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY------HSETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE------ECCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE------eCCcchhhH
Confidence 456678889999999999999988898622 234677763 4699999999999999988875 23332211
Q ss_pred -------eeecc-----CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 005319 142 -------VWLKY-----VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (702)
Q Consensus 142 -------~WL~~-----~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpI 187 (702)
.++.. ..++++-.-+. --+.+-+|+++|++.-++++|+..=||++
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 11110 12333211111 11456778999999999888766655554
No 131
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=48.70 E-value=54 Score=26.69 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr 126 (702)
..++.++++|+.|+++|.+ .-|. ++. ...++.+++++.||.||.-
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 4678999999999999988 5554 233 3568889999999988743
No 132
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=48.44 E-value=38 Score=35.60 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=39.0
Q ss_pred HHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 74 l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
.+++|++|++.|-+ +|-|.+ --|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii----GHSERR-~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII----GHSERR-QYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe----Cccccc-CcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 46799999999999 555544 344433 56889999999999999999997
No 133
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=47.45 E-value=72 Score=35.20 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeee----CCCCCCC------CCceeccc---chhHHHHHHHHHHcCcEEEeec
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPT------QGNYYFQD---RYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~----W~~hEp~------~G~~df~g---~~dl~~fl~la~~~gL~vilr~ 127 (702)
+.+..++.|+.|....+|+...++- |.+--+. .|.|.-.| ..|+.++++.|++.|+.||..+
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 6788999999999999999998753 5443221 23222111 3499999999999999999873
No 134
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=46.60 E-value=55 Score=36.11 Aligned_cols=105 Identities=21% Similarity=0.375 Sum_probs=62.6
Q ss_pred CEEEEeeeCCCCC---CCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhH
Q 005319 83 DVIQTYVFWNGHE---PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPF 159 (702)
Q Consensus 83 N~V~~yv~W~~hE---p~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~ 159 (702)
+.|.+.|+|+++- |.+ ..++.|+++|+.|+--. .=||+ +-+.|+... +.. ++
T Consensus 31 ~yvD~fvywsh~~~~iPp~------------~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~l----L~~-~~-- 85 (339)
T cd06547 31 QYVDTFVYFSHSAVTIPPA------------DWINAAHRNGVPVLGTF----IFEWT--GQVEWLEDF----LKK-DE-- 85 (339)
T ss_pred hhhheeecccCccccCCCc------------HHHHHHHhcCCeEEEEE----EecCC--CchHHHHHH----hcc-Cc--
Confidence 3578889999854 333 78999999999997432 33665 334565421 111 11
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccccCCcchHHHHHHHHHHHHhc
Q 005319 160 KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL 221 (702)
Q Consensus 160 ~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 221 (702)
+...++.++|++..+.+.+ + | +.+-+|+..+... ..+.-.+|++.|++.+++.
T Consensus 86 -~~~~~~a~kLv~lak~yGf---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~ 138 (339)
T cd06547 86 -DGSFPVADKLVEVAKYYGF---D-G--WLINIETELGDAE--KAKRLIAFLRYLKAKLHEN 138 (339)
T ss_pred -ccchHHHHHHHHHHHHhCC---C-c--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhc
Confidence 1235667778888885543 2 3 7777888773110 0122345777777777664
No 135
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=46.20 E-value=99 Score=28.62 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=40.1
Q ss_pred eEEEEEEecCCCCcccccCCCCCcEEeCCcceEEEEEECCEEEEEEEcccC-----CCeeEEeeeeecCC-CccEEEEEE
Q 005319 480 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLE-----NPKLTFSKNVKLRP-GVNKISLLS 553 (702)
Q Consensus 480 yvlY~T~i~~~~~~~~~~~g~~~~L~i~~~~D~a~VfVng~~vGt~~~~~~-----~~~~~~~~~~~l~~-g~~~L~ILV 553 (702)
.+.|++.|..+.++.+ ++.+. ..|.+.+||||+.+-...+... .........+.+.. +.+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~y-------~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGTY-------TFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEEE-------EEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCceE-------EEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 4678888876544421 34343 6789999999999976654321 00111122233444 577888876
Q ss_pred ecCCC
Q 005319 554 TSVGL 558 (702)
Q Consensus 554 EnmGr 558 (702)
.+.+.
T Consensus 119 ~~~~~ 123 (145)
T PF07691_consen 119 FNRGG 123 (145)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 65543
No 136
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.15 E-value=29 Score=36.29 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCCC----CceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~----G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.+.|+++|+.+.+.+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 4567788999999999966 22232211 112221 2478999999999999999997
No 137
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=42.49 E-value=54 Score=31.19 Aligned_cols=52 Identities=25% Similarity=0.425 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 005319 107 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (702)
Q Consensus 107 ~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~ 176 (702)
.||..||++|++.|+.|++=.-| +++.|-- .-|+ =.+.-++++++|-.++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd---------ytG~--------~~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYD---------YTGL--------SKEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHH---------HTT----------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHH---------HhCC--------CHHHHHHHHHHHHHHHHH
Confidence 49999999999999998765544 5555531 1111 024556788888888883
No 138
>PLN02784 alpha-amylase
Probab=42.12 E-value=57 Score=40.28 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCCEEEEeeeCCCCCCC-CCcee-------cccchhHHHHHHHHHHcCcEEEeec
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYY-------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~~hEp~-~G~~d-------f~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.++|..++++|+++|-+.=+.....+. =..+| |....+|.++++.|+++||.||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888899999999885432222111 01122 3345799999999999999999875
No 139
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=41.70 E-value=35 Score=38.64 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=39.8
Q ss_pred HHHHHHHHCCCCEEEE-eeeCC---CCCCCCC---ce--ecccchhHHHHHHHHHHcCcEEEeec
Q 005319 72 DLIQKAKDGGLDVIQT-YVFWN---GHEPTQG---NY--YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 72 ~~l~k~ka~G~N~V~~-yv~W~---~hEp~~G---~~--df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
+.|.-+|.+|+++|-+ +++=+ .|--..- +. .|....|++++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999965 23211 1211100 00 47778899999999999999999874
No 140
>PRK09875 putative hydrolase; Provisional
Probab=41.58 E-value=1.4e+02 Score=32.29 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=57.3
Q ss_pred eEEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHH
Q 005319 38 SVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (702)
Q Consensus 38 ~v~~d~~~f~~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~ 117 (702)
.+++-+-++.++..++. +......-..+.-...|+.+|++|.+||=- ..+ ..-.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHH
Confidence 45666777776653221 111111122344556788999999987732 222 112469999999999
Q ss_pred HcCcEEEeecCcccccccCCCCCCeeecc
Q 005319 118 QAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (702)
Q Consensus 118 ~~gL~vilr~GPyicaEw~~GG~P~WL~~ 146 (702)
+-|+.||.-+|-|.-.. .|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999986333 6778763
No 141
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=41.19 E-value=47 Score=36.08 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCC--ceecccch--hHHHHHHHHHHcCcEEEeecCcccc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRY--DLVRFIKLVQQAGLYVHLRIGPYVC 132 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G--~~df~g~~--dl~~fl~la~~~gL~vilr~GPyic 132 (702)
..+.-++.++++++.||..=.+.+-|.+.. ..+ .|+|+-.+ |..++|+..++.|++|++..=|+|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 455568899999999887655554454433 344 77766433 8999999999999999998777763
No 142
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=40.77 E-value=58 Score=34.42 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=35.8
Q ss_pred HHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
-.+++|++|++.|-+ +|-| ++-.|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii----GHSE-RR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII----GHSE-RRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe----Cccc-ccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 346799999999999 5444 44444433 33455555569999999999997
No 143
>PRK14566 triosephosphate isomerase; Provisional
Probab=40.62 E-value=79 Score=33.68 Aligned_cols=49 Identities=22% Similarity=0.131 Sum_probs=37.7
Q ss_pred HHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 74 l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
.+++|++|++.|-+ +|-|.+ ..|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii----GHSERR-~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII----GHSERR-RMYGET-SNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE----Cccccc-CCCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999998 555544 444333 45677789999999999999997
No 144
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.54 E-value=41 Score=37.15 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=43.8
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 64 r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
|.+...-.-..+.++++|.++|.+.|+|.-.++. .-+-.-..+|.++.+.|+++||-+++.+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5444332223677999999999999999844331 0111223489999999999999998874
No 145
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=40.37 E-value=32 Score=33.63 Aligned_cols=63 Identities=17% Similarity=0.103 Sum_probs=42.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEeeeC-CCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcc
Q 005319 67 PEMWPDLIQKAKDGGLDVIQTYVFW-NGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (702)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~W-~~hEp~--~G~~df~g~~dl~~fl~la~~~gL~vilr~GPy 130 (702)
.+..++.++.++++|+..|.+...+ ..+... +..++.. ...|.++.+.|+++|+.+.+.|-|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccC
Confidence 3466788999999999998886542 122211 1122211 2478899999999999999998653
No 146
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.84 E-value=65 Score=34.98 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCC---CCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEP---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp---~~G~~df~g~--~dl~~fl~la~~~gL~vilr~GPyic 132 (702)
+.-++.++++++.++..=.+.+-+.+..- ....|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 45678899999999976655543322221 1234665432 38999999999999999999888885
No 147
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=39.31 E-value=83 Score=37.72 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=53.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEe-ee-----CC--CCCCCCCceec---------ccchhHHHHHHHHHHcCcEEEeecC
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTY-VF-----WN--GHEPTQGNYYF---------QDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~y-v~-----W~--~hEp~~G~~df---------~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
.+..| +.++.+|+++|-+- ++ |. .-.-..|-||- ....|++++++.|+++||+||+..=
T Consensus 76 ~~~~w----dyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALW----KALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHH----HHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45566 46888999999772 22 22 11222456662 3347999999999999999997732
Q ss_pred --------cccccccCCCCCCeee
Q 005319 129 --------PYVCAEWNYGGFPVWL 144 (702)
Q Consensus 129 --------PyicaEw~~GG~P~WL 144 (702)
||.-||.+.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 3888999998899887
No 148
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=39.21 E-value=67 Score=32.16 Aligned_cols=89 Identities=16% Similarity=0.261 Sum_probs=55.1
Q ss_pred EEEEeeCCCCC-----cccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecc--c-chhHHHHHHHHHHcCcEEEeec
Q 005319 56 ISGSIHYPRST-----PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--D-RYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 56 ~sG~~Hy~r~~-----~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~--g-~~dl~~fl~la~~~gL~vilr~ 127 (702)
.-|.+||++.. .++.+.-++.++..+... ...|--.|..++.+.-+ - ...+.+|++..+++|.++++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 33999998743 455777788888765432 11233344433433211 1 1468899999999999999988
Q ss_pred Ccccc----ccc---CCCCCCeeeccC
Q 005319 128 GPYVC----AEW---NYGGFPVWLKYV 147 (702)
Q Consensus 128 GPyic----aEw---~~GG~P~WL~~~ 147 (702)
+++-. +.. +....|-|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 87521 111 145689999764
No 149
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=38.92 E-value=1.4e+02 Score=31.13 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=45.5
Q ss_pred CCceecc-cchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 005319 98 QGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (702)
Q Consensus 98 ~G~~df~-g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~ 176 (702)
.|...+. ...++..+++.|++.|++|++..|= |..+.+-. +. .++ +.-+++.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~~~-~~---------~~~---~~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEFTA-AL---------NDP---AKRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcchh-hh---------cCH---HHHHHHHHHHHHHHHH
Confidence 4666664 3357889999999999999999861 22111100 11 122 2345678888888886
Q ss_pred ccccccCCCceEEeccccCcc
Q 005319 177 EKLFQTQGGPIILSQIENEFG 197 (702)
Q Consensus 177 ~~~~~~~gGpII~~QiENEyg 197 (702)
+++ =++.|+=|+.
T Consensus 98 ~~~--------DGIdiDwE~~ 110 (253)
T cd06545 98 YNL--------DGIDVDLEGP 110 (253)
T ss_pred hCC--------CceeEEeecc
Confidence 543 2445666664
No 150
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.78 E-value=47 Score=34.78 Aligned_cols=60 Identities=18% Similarity=0.047 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCCC-CceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~-G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
+.+++.++.++++|++.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4467889999999999998631100011111 01111 124688899999999999999883
No 151
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=38.63 E-value=2e+02 Score=29.64 Aligned_cols=90 Identities=8% Similarity=0.079 Sum_probs=64.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecc-cchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeee
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 144 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~-g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL 144 (702)
.+..++..++.++++|+..+.+|..... ....+..+ |..|-..-+++|+++|+ -+ |-|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PP-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CC-----------CCEEEE
Confidence 5788999999999999999999887765 22223332 67899999999999998 22 333444
Q ss_pred ccCCCeEeecCChhHHHHHHHHHHHHHHHHHhc
Q 005319 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAE 177 (702)
Q Consensus 145 ~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~ 177 (702)
.-+.+. .+..+...+..|++.+.+.|...
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 322221 23346778888999888888843
No 152
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=38.13 E-value=2.7e+02 Score=30.53 Aligned_cols=134 Identities=13% Similarity=0.168 Sum_probs=66.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~ 145 (702)
..+..++--+.+...|+|.|.+ |-..-.+-.-.=+....+.++-++.+.+||+|-|-.- ..+=-+-||+
T Consensus 55 ~~~R~~~YARllASiGINgvvl----NNVNa~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn--FasP~~lggL----- 123 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVL----NNVNANPKLLTPEYLDKVARLADVFRPYGIKVYLSVN--FASPIELGGL----- 123 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-----S-SS--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE---TTHHHHTTS------
T ss_pred chhHHHHHHHHHhhcCCceEEe----cccccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEee--ccCCcccCCc-----
Confidence 4456778888999999999998 5554444222223345778888888999999977531 0111233553
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccccCCcchHHHHHHHHHHHHhcC
Q 005319 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLN 222 (702)
Q Consensus 146 ~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 222 (702)
.|.|| .-..|++|+++.++.|-+ +.=.=||=++=.--|.+-|.+ .|+....+=..-|++.++-+|
T Consensus 124 -------~TaDP-ld~~V~~WW~~k~~eIY~--~IPDfgGflVKAdSEGqPGP~--~YgRthAdGANmlA~Al~P~G 188 (328)
T PF07488_consen 124 -------PTADP-LDPEVRQWWKDKADEIYS--AIPDFGGFLVKADSEGQPGPF--TYGRTHADGANMLARALKPHG 188 (328)
T ss_dssp -------S---T-TSHHHHHHHHHHHHHHHH--H-TT--EEEE--SBTTB--GG--GGT--HHHHHHHHHHHHGGGT
T ss_pred -------CcCCC-CCHHHHHHHHHHHHHHHH--hCCCccceEEEecCCCCCCCc--ccCCCchhhHHHHHHHhhccC
Confidence 23332 235677777776655552 211345655555556666654 245433333455666666555
No 153
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=38.03 E-value=2.4e+02 Score=31.81 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=65.4
Q ss_pred CCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCe----EeecC-ChhHHHHHHHHHHHH
Q 005319 96 PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFRTD-NGPFKAAMHKFTEKI 170 (702)
Q Consensus 96 p~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~----~~R~~-d~~~~~~~~~~~~~l 170 (702)
+..|.|||+....=+.|++.|++.|...++-+- =-.|.|+.+.-.. ....+ .+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 457999998777777899999999999877651 1468888763210 00000 234566777888888
Q ss_pred HHHHHhccccccCCCceEEeccccCccCccc-------cCC-cchHHHHHHHHHHHHhcCCCcceEeecC
Q 005319 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEW-------DIG-APGKAYAKWAAQMAVGLNTGVPWVMCKQ 232 (702)
Q Consensus 171 ~~~i~~~~~~~~~gGpII~~QiENEyg~~~~-------~~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 232 (702)
+++++++ |=+|=-+-.=||...... .+. +.....++.|...+++.|++.-+..++.
T Consensus 164 v~~~~~~------GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKW------GINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCT------T--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhc------CCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 8888633 325555556688753210 011 1235677888888888898865555443
No 154
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=37.70 E-value=59 Score=35.74 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=53.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccc--hhH--HHHHHHHHHcCcEEEeecCcccc
Q 005319 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDL--VRFIKLVQQAGLYVHLRIGPYVC 132 (702)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~--~dl--~~fl~la~~~gL~vilr~GPyic 132 (702)
+|..|. ..+..++.++++++.||..=.+.+-+.++. ..+.|.|+.. -|. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455553 456678999999999998655554433333 2467776653 377 99999999999999999888887
Q ss_pred cc
Q 005319 133 AE 134 (702)
Q Consensus 133 aE 134 (702)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 155
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=37.68 E-value=49 Score=35.22 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=34.6
Q ss_pred CCCcceEEEEEEecCCCCcccccCCCCCcEEeCCcceEEEEEECCEEE
Q 005319 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLS 522 (702)
Q Consensus 475 ~d~~GyvlY~T~i~~~~~~~~~~~g~~~~L~i~~~~D~a~VfVng~~v 522 (702)
+|-+|.+||+.++....+. ..-.++...|++.++|..|.|+|||.-+
T Consensus 84 rdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~ 130 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDA 130 (297)
T ss_pred ccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceee
Confidence 4678899999998754321 0112345679999999999999999754
No 156
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.35 E-value=1.3e+02 Score=28.88 Aligned_cols=47 Identities=26% Similarity=0.327 Sum_probs=35.5
Q ss_pred HHHHHHHCCCCEEEEeeeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEe
Q 005319 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~--~dl~~fl~la~~~gL~vil 125 (702)
.++.+.|.+--|++|-.+|- .|.-.|.|. .+|-+.+. |+...+.|+.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 35678889999999999996 577889886 36666666 6666677664
No 157
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=37.33 E-value=48 Score=34.49 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
+..++.++.++++|..+|.+...+.-....+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 346788899999999999774332211111111111112467888899999999999997
No 158
>PRK15492 triosephosphate isomerase; Provisional
Probab=36.80 E-value=72 Score=33.91 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=37.9
Q ss_pred HHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 74 l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
..++|++|++.|-+ +|-|. +-.|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~vii----GHSER-R~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI----GHSER-RHKFGET-DQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE----Ccccc-ccccCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999999 55554 4455433 45677788999999999999997
No 159
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=36.41 E-value=33 Score=38.38 Aligned_cols=90 Identities=12% Similarity=0.152 Sum_probs=65.4
Q ss_pred cccceeEEEecCcEEECCEEeEEEEEEeeCCC-CCcccHHHHHHHHHHC-CCCEEEEeeeCCCCCCCCCceecccchhHH
Q 005319 33 SFVKASVSYDHKAVIINGQKRILISGSIHYPR-STPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (702)
Q Consensus 33 ~~~~~~v~~d~~~f~~dG~p~~l~sG~~Hy~r-~~~~~W~~~l~k~ka~-G~N~V~~yv~W~~hEp~~G~~df~g~~dl~ 110 (702)
|.....|-.-+=+|-+.-.+-...+=|+.|+- .|...|+-+|.-+.++ -=|||..-|- |=+.|-=++|+-. .|.
T Consensus 147 A~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~ 222 (447)
T KOG0259|consen 147 ANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLK 222 (447)
T ss_pred cCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHH
Confidence 44455555555555555444444555555544 6888899999988875 5688888443 7777888899888 999
Q ss_pred HHHHHHHHcCcEEEee
Q 005319 111 RFIKLVQQAGLYVHLR 126 (702)
Q Consensus 111 ~fl~la~~~gL~vilr 126 (702)
+++++|+++||.||..
T Consensus 223 kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 223 KIAETAKKLGIMVIAD 238 (447)
T ss_pred HHHHHHHHhCCeEEeh
Confidence 9999999999999865
No 160
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=36.36 E-value=18 Score=31.34 Aligned_cols=36 Identities=25% Similarity=0.556 Sum_probs=26.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHH
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ 118 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~ 118 (702)
....|-.-+|.+.. .||.|-.|||. +|++||++|.|
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alk 55 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALK 55 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHc
Confidence 34558777766643 48999999999 99999999987
No 161
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=36.18 E-value=62 Score=35.17 Aligned_cols=73 Identities=7% Similarity=0.108 Sum_probs=51.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCccccc
Q 005319 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (702)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~--~dl~~fl~la~~~gL~vilr~GPyica 133 (702)
+|..|. ..+..++.++++++.++-.=.+.+-+.+.. ..+.|+|+-. -|..++++..++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 344453 455678999999999987555444322222 3456766543 389999999999999999988888753
No 162
>PLN02561 triosephosphate isomerase
Probab=36.13 E-value=75 Score=33.67 Aligned_cols=49 Identities=12% Similarity=-0.020 Sum_probs=38.4
Q ss_pred HHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 74 l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
..++|++|++.|-+ +|-|.+ ..|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 81 ~~mL~d~G~~~vii----GHSERR-~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL----GHSERR-ALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE----Cccccc-CccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 46799999999999 555544 445433 56778888999999999999997
No 163
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=36.00 E-value=56 Score=39.52 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=41.1
Q ss_pred HHHHHHHCCCCEEEE-eeeCCCCCCCC---C-ceec----------------cc-----chhHHHHHHHHHHcCcEEEee
Q 005319 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-NYYF----------------QD-----RYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~-yv~W~~hEp~~---G-~~df----------------~g-----~~dl~~fl~la~~~gL~vilr 126 (702)
.|.-+|.+|+++|+. +|+.-..++.. | .|+| +. .+.++.+|+.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999998 67765555543 2 2222 22 247889999999999999998
Q ss_pred c
Q 005319 127 I 127 (702)
Q Consensus 127 ~ 127 (702)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 164
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=35.83 E-value=1.5e+02 Score=32.26 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=88.3
Q ss_pred ccccceeEEEecCcEEECCEEeEEEEEEeeCCCCCc---ccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchh
Q 005319 32 ISFVKASVSYDHKAVIINGQKRILISGSIHYPRSTP---EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYD 108 (702)
Q Consensus 32 ~~~~~~~v~~d~~~f~~dG~p~~l~sG~~Hy~r~~~---~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~d 108 (702)
++.....|++-+.++.+|. .=+.++.=+-+-... +.-...+...++.|.+||=. +.+ -.--||
T Consensus 11 Ia~~~lGvTl~HEHl~~~~--~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD--------~T~----~~~GRd 76 (316)
T COG1735 11 IAPADLGVTLMHEHLFIDP--YEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVD--------ATN----IGIGRD 76 (316)
T ss_pred CCHHHccceeehhhhccch--HHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEee--------CCc----cccCcC
Confidence 3444556777777777775 111111111111111 11234566777889988755 111 011369
Q ss_pred HHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceE
Q 005319 109 LVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (702)
Q Consensus 109 l~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII 188 (702)
..++.+.+++-||.+|...|+|.-+.|+ .|+...| ++.+.+.+++.+. . +=.|+=|
T Consensus 77 v~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~--~---Gi~gT~i 132 (316)
T COG1735 77 VLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIE--E---GIAGTGI 132 (316)
T ss_pred HHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHH--h---cccCCcc
Confidence 9999999999999999999999988864 6665433 4455555555555 1 2123333
Q ss_pred EeccccCccCccccCCcchHHHHHHHHHHHHhc-CCCcceEeecC
Q 005319 189 LSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVMCKQ 232 (702)
Q Consensus 189 ~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~~ 232 (702)
..=|=-|-|.+.. . ...=.+.|+..++.. -.++|+.+.++
T Consensus 133 kAGiIk~~~~~~~-i---Tp~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 133 KAGIIKEAGGSPA-I---TPLEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred ccceeeeccCccc-C---CHHHHHHHHHHHHHhhhcCCCeEEecc
Confidence 3333345555421 1 222234555555533 35788876654
No 165
>PRK09989 hypothetical protein; Provisional
Probab=35.76 E-value=68 Score=33.35 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vil 125 (702)
-.+++|++++++|+..|++..+|. .+.+++.++.+++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999943322 1366888889999999874
No 166
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=35.58 E-value=64 Score=35.37 Aligned_cols=68 Identities=6% Similarity=0.043 Sum_probs=50.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccccc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~--~dl~~fl~la~~~gL~vilr~GPyicaE 134 (702)
..+.-++.++++++.|+..=.+.+-+.+ ....+.|+|+-. -|..++++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 4455678899999999986555444322 234566776543 3899999999999999999998888753
No 167
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=35.28 E-value=27 Score=37.86 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=41.0
Q ss_pred eEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eec
Q 005319 53 RILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRI 127 (702)
Q Consensus 53 ~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi-lr~ 127 (702)
.++++-+..--+. |+.|++.+..+-++|+|.|+- +|+.-. |..+|.++|+++|..++ +|.
T Consensus 35 ~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 35 TLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp EEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred EEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 3444444444444 588999999999999999997 888654 77899999999999877 564
No 168
>PTZ00333 triosephosphate isomerase; Provisional
Probab=35.05 E-value=81 Score=33.43 Aligned_cols=49 Identities=22% Similarity=0.195 Sum_probs=38.7
Q ss_pred HHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 74 l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
..++|++|++.|-+ + |..++-.|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii----G-HSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL----G-HSERRQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE----C-cccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 36799999999999 4 44444455333 56888999999999999999997
No 169
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.99 E-value=1.3e+02 Score=32.68 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=46.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEee----eCCCCC---CC---CC----ceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 65 STPEMWPDLIQKAKDGGLDVIQTYV----FWNGHE---PT---QG----NYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv----~W~~hE---p~---~G----~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.+.+..++.|+.|...++|+...++ -|.+-- |+ .| .|. ..|+.++++.|++.|+.||..+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 4688899999999999999999987 474421 11 22 232 3499999999999999999774
No 170
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=34.94 E-value=73 Score=34.92 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=46.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeee----CCCCCCC------CCcee--------cccchhHHHHHHHHHHcCcEEEeec
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPT------QGNYY--------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~----W~~hEp~------~G~~d--------f~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
+.+..++.|+.|...++|+...++- |.+.-+. .|.+. |=-..++.++++.|++.|+.||..+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 7888999999999999999999873 5443211 22221 1013599999999999999999774
No 171
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=34.68 E-value=67 Score=36.27 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=44.7
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE-EeecC
Q 005319 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV-HLRIG 128 (702)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~v-ilr~G 128 (702)
...+.-+..|+.+|++|+|.|-++.+=.---+.+-.|.-+ ..|-+.+++++.+.|..+ +|..|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~A-i~dAr~vfd~g~e~Gf~m~~LdiG 253 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDA-ISDARNVFDMGAELGFEMDILDIG 253 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHH-HHHHHHHHHHHHhcCceEEEeecC
Confidence 4455678899999999999999966544222223233222 357788899999999985 68886
No 172
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=34.48 E-value=64 Score=33.88 Aligned_cols=46 Identities=26% Similarity=0.475 Sum_probs=36.6
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCccccc
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi-lr~GPyica 133 (702)
-++.++++|+.|+ -|+.+| +|.+ +.++.|++.|-..| |-+|||..+
T Consensus 115 l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 115 LKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 4667888999998 556633 6776 78999999999876 999999865
No 173
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=34.11 E-value=55 Score=33.81 Aligned_cols=60 Identities=12% Similarity=-0.079 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
+.+++.++.++++|..+|.+...+.--++..-+..-.-...+.++.+.|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 567888999999999999863222100000001101112468888999999999999987
No 174
>PRK09267 flavodoxin FldA; Validated
Probab=33.68 E-value=3.4e+02 Score=26.16 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=49.1
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE
Q 005319 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (702)
Q Consensus 48 ~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi 124 (702)
+..-..++++...|....++..|.+-+.+++...++...+.+|= ......-.-.| ..-+..+.+++.+.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 44556688999999877778889988888888777777777773 22111100112 2346677788888897665
No 175
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=33.64 E-value=2.4e+02 Score=32.15 Aligned_cols=85 Identities=18% Similarity=0.109 Sum_probs=59.3
Q ss_pred CcEEECCEEeEEEEEEeeCCCCC---cccHHHHHHHHHHCCCCE--E--EEeeeCCCCCCCCCceecccchhHHHHHHHH
Q 005319 44 KAVIINGQKRILISGSIHYPRST---PEMWPDLIQKAKDGGLDV--I--QTYVFWNGHEPTQGNYYFQDRYDLVRFIKLV 116 (702)
Q Consensus 44 ~~f~~dG~p~~l~sG~~Hy~r~~---~~~W~~~l~k~ka~G~N~--V--~~yv~W~~hEp~~G~~df~g~~dl~~fl~la 116 (702)
+...+++.-|+++.+.-+-++.+ ++.-+.-.+.+++.|++. | .....-|+-.|.+..++++ ..-+.+-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 55677788899998887766533 234455566778888752 3 2222267777888777776 45677889999
Q ss_pred HHcCcE-EEeecCc
Q 005319 117 QQAGLY-VHLRIGP 129 (702)
Q Consensus 117 ~~~gL~-vilr~GP 129 (702)
++.|.. |++-||=
T Consensus 228 ~~LGa~~VV~HPGs 241 (413)
T PTZ00372 228 EQLGIKLYNFHPGS 241 (413)
T ss_pred HHcCCCEEEECCCc
Confidence 999998 5677873
No 176
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=33.06 E-value=46 Score=35.36 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=43.3
Q ss_pred HHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.-+.+|+.|-++|-+-|+|-.-||+ -+-.-..-|++|...|..+||..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e---~neqk~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDE---INEQKLAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchH---HhHHHHHHHHHHHHHhhhcCCceeEee
Confidence 3567899999999999999999982 333333478999999999999999998
No 177
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=32.70 E-value=1.3e+02 Score=34.35 Aligned_cols=104 Identities=15% Similarity=0.259 Sum_probs=60.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEe-eeCCCCCCC----CCceecc-----cc-----hhHHHHHHHH-HHcCcEEEeecCc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPT----QGNYYFQ-----DR-----YDLVRFIKLV-QQAGLYVHLRIGP 129 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~y-v~W~~hEp~----~G~~df~-----g~-----~dl~~fl~la-~~~gL~vilr~GP 129 (702)
+-+.|+++|+.++++|+|+|..- +----..-+ ..+..|+ .. .++.+++..+ +++||.++...
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 44689999999999999999762 111000001 1122221 11 4999999988 47999987654
Q ss_pred ccccccCCCC-CCeeeccCCCeEeecCChhHHHHH---HHHHHHHHHHHH
Q 005319 130 YVCAEWNYGG-FPVWLKYVPGIEFRTDNGPFKAAM---HKFTEKIVSMMK 175 (702)
Q Consensus 130 yicaEw~~GG-~P~WL~~~p~~~~R~~d~~~~~~~---~~~~~~l~~~i~ 175 (702)
=|+.-. ==.||...|+.-.-..+.++++.+ ++-+.++...|.
T Consensus 98 ----V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 98 ----VLNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred ----eeccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 122211 135898888764444455555433 334444444444
No 178
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=32.57 E-value=80 Score=32.82 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vil 125 (702)
++++|++++++|+..|+.. . |. ..+++++.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 7899999999999999982 1 11 13789999999999999854
No 179
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.26 E-value=1.6e+02 Score=32.05 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=44.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeee--CCCC---CCC------------------------CCceecccchhHHHHHHHH
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGH---EPT------------------------QGNYYFQDRYDLVRFIKLV 116 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~--W~~h---Ep~------------------------~G~~df~g~~dl~~fl~la 116 (702)
+.+..++.|+.|...++|++..++- |.+- .|. .|.|. ..++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 6888999999999999999998643 3331 111 12222 35999999999
Q ss_pred HHcCcEEEeec
Q 005319 117 QQAGLYVHLRI 127 (702)
Q Consensus 117 ~~~gL~vilr~ 127 (702)
++.||.||..+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999999764
No 180
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.22 E-value=1e+02 Score=33.54 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=48.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCC--C---CCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHE--P---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hE--p---~~G~~df~g~--~dl~~fl~la~~~gL~vilr~GPyic 132 (702)
..+..++.++++++.||-.=.+.+-+.++. . .-|.|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 455678899999999987555544333333 1 2356666533 38999999999999999998877775
No 181
>PLN02429 triosephosphate isomerase
Probab=32.21 E-value=86 Score=34.31 Aligned_cols=49 Identities=18% Similarity=0.043 Sum_probs=34.3
Q ss_pred HHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 74 l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
.+++|++|++.|-+ +|-|.+ -.|.-+ +..+.+=+..|.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~Vii----GHSERR-~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL----GHSERR-HVIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe----CccccC-CCCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 45799999999999 555554 344433 22333444459999999999997
No 182
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=32.01 E-value=72 Score=33.79 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCCEEEEeeeCCC---CCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWNG---HEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~~---hEp~~G~~df~g~~dl~~fl~la~~~gL~vil 125 (702)
++.+++||++|++.|...+- .. ++.--+..+|+ +..+.++.+++.|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 67899999999999988544 11 11111223444 666789999999998653
No 183
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=31.98 E-value=66 Score=33.69 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCccccc
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi-lr~GPyica 133 (702)
.-++.++++|+.|+ .|+. +.+|.+ +.++.|++.|-..| |-+|||..+
T Consensus 111 ~l~~~i~~l~~~gI-~VSL-----FiDPd~------------~qi~~A~~~GAd~VELhTG~Ya~a 158 (234)
T cd00003 111 KLKPIIERLKDAGI-RVSL-----FIDPDP------------EQIEAAKEVGADRVELHTGPYANA 158 (234)
T ss_pred HHHHHHHHHHHCCC-EEEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 34667888889988 3666 456766 77888999998876 889998754
No 184
>PRK14567 triosephosphate isomerase; Provisional
Probab=31.28 E-value=1e+02 Score=32.68 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=37.7
Q ss_pred HHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 74 l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
..++|++|++.|-+ .|-|.+ -.|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii----GHSERR-~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI----GHSERR-SLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE----Cccccc-CccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 35799999999999 555544 444433 45677888899999999999997
No 185
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=30.91 E-value=1e+02 Score=33.10 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=43.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCC--CCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp--~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 3667889999999999999999875432111 11211122 2378899999999999887764
No 186
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=30.91 E-value=68 Score=33.66 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=31.6
Q ss_pred EECCEEeEEEEEEeeCCCCC-cccHHHHHHHHHHCCCCEEE
Q 005319 47 IINGQKRILISGSIHYPRST-PEMWPDLIQKAKDGGLDVIQ 86 (702)
Q Consensus 47 ~~dG~p~~l~sG~~Hy~r~~-~~~W~~~l~k~ka~G~N~V~ 86 (702)
.+.|+++..+.|..|+.... ..+-+--++.||++|+..+=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 56799999999999976643 33447889999999997653
No 187
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=30.43 E-value=1e+02 Score=34.74 Aligned_cols=68 Identities=15% Similarity=0.326 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccccc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~--~dl~~fl~la~~~gL~vilr~GPyicaE 134 (702)
..+...+.++.+++.|+-.=...+-..+.. ..+.|.|+.. -|..++++.+++.|+++++..-|+|+-+
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 455678999999999997666554433222 4445555432 3899999999999999999988888655
No 188
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=30.03 E-value=1.7e+02 Score=31.43 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceeccc--chhHHHHHHHHHHcCcEEEeec
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g--~~dl~~fl~la~~~gL~vilr~ 127 (702)
..|+-+..-+..|++|.+.++- ...-|+---|+|.| ..-|...-+.++++||.|+-+.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEv 116 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEV 116 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEe
Confidence 3456677888999999999999 55667777799986 4677777788899999988776
No 189
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=30.02 E-value=1.4e+02 Score=33.28 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.|..-++.+++.|++.|.-+...-.-....+. + --..+++.|++.||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~--~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK--I----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc--c----CCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999877664322221111111 1 23589999999999999775
No 190
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.88 E-value=1.1e+02 Score=32.45 Aligned_cols=72 Identities=17% Similarity=0.061 Sum_probs=45.6
Q ss_pred CEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 50 GQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 50 G~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
| ++.+..=.+|+.-.-.=.=+--..++|++|++.|-+ +|-|.+. .|+-+ ...+.+=++.|.++||.+||+.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii----GHSERR~-~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI----GHSERRL-YFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE----Ccccccc-ccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 6 555555455543211111122345799999999998 6555443 33322 34567888999999999999987
No 191
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.74 E-value=1.1e+02 Score=32.76 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeee--CCCCC------CCCCceecccc--hhHHHHHHHHHHcCcEEEeecCccc
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGHE------PTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYV 131 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~--W~~hE------p~~G~~df~g~--~dl~~fl~la~~~gL~vilr~GPyi 131 (702)
+.+.-++.++++++.||-.=.+++= |.... -.-+.|.|+-. -|..++++..++.|++|++..=|+|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5566788999999999976555543 43321 12356666533 4999999999999999998875544
No 192
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=29.15 E-value=99 Score=33.85 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=50.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCccccc
Q 005319 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (702)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~--~dl~~fl~la~~~gL~vilr~GPyica 133 (702)
+|..|. ..+..++.++++++.|+-.=.+.+-+.+.. .-+.|+|+-. -|..++++..++.|+++++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455442 455678899999999987544443333322 3445666533 378999999999999999988888853
No 193
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.05 E-value=1.2e+02 Score=34.68 Aligned_cols=73 Identities=16% Similarity=0.300 Sum_probs=51.6
Q ss_pred ecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeee----CCCCC---C------------------
Q 005319 42 DHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE---P------------------ 96 (702)
Q Consensus 42 d~~~f~~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~----W~~hE---p------------------ 96 (702)
.-|+|+||=-| |++ +.+.-++.|+.|....+|....++- |-+-- |
T Consensus 6 ~~RGlmLDvaR--------~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~ 75 (445)
T cd06569 6 EYRGMHLDVAR--------NFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTC 75 (445)
T ss_pred cccceeeeccC--------CCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccc
Confidence 34666666333 333 7888999999999999999999862 43210 0
Q ss_pred --------------CCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 97 --------------TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 97 --------------~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
..|.|. ..|+.++++.|++.|+.||..+
T Consensus 76 ~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 76 LLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred cccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 012222 3599999999999999999763
No 194
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=28.93 E-value=58 Score=39.25 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHHHHHHCCCCEEEEeeeCCC-CCCCCCce---ec---------c----cchhHHHHHHHHHHcCcEEEeec
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWNG-HEPTQGNY---YF---------Q----DRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~~-hEp~~G~~---df---------~----g~~dl~~fl~la~~~gL~vilr~ 127 (702)
+++|..+|.+|+|+|+.=---.+ |+-.-.-| +| . -..++.++++.|++.||.|||..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 45588999999999997211122 22211111 11 0 02489999999999999999985
No 195
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=28.88 E-value=2e+02 Score=27.46 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=45.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecc---cchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCe
Q 005319 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~---g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~ 142 (702)
.+.+.+..++.|+++|+..+-+|..... ....|... |..|-..-++.|+++|+. . |-|-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~---~~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~I 97 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGR---ETSDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPI 97 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-----------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccc---cccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEE
Confidence 4678899999999999999999877621 12222222 668889999999999982 2 3344
Q ss_pred eeccCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 005319 143 WLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (702)
Q Consensus 143 WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~ 176 (702)
++--+-+ ..+..+.+.+..|++.+.+.|..
T Consensus 98 YfavD~d----~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 98 YFAVDYD----ATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEE--TS-----B-HH-------HHHHHHHHHGG
T ss_pred EEEeecC----CCchhhhhHHHHHHHHHHHHHhh
Confidence 4432212 24566777888888888888874
No 196
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.69 E-value=87 Score=32.92 Aligned_cols=58 Identities=22% Similarity=0.155 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCC-CCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWN-GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~-~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
..++.++.++++|+++|.+.-... ..+..+-.++. -...+.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR-FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH-HHHHHHHHHHHHHHcCCEEEEee
Confidence 467889999999999997631100 00000000111 11467788999999999999986
No 197
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.65 E-value=61 Score=34.03 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEeeeCCCCCCC---CCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 005319 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (702)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~---~G~~df~g~~dl~~fl~la~~~gL~vilr~GP 129 (702)
+.+++.++.++++|+.+|.+ |..+.+. +..+.- -...+.++.++|+++|+.+.+.+-+
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCCC
Confidence 34788899999999998755 3333321 111110 1246788888888999999999743
No 198
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.81 E-value=1.4e+02 Score=32.96 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=49.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEee----------eCCCCCC---------CCCceeccc---chhHHHHHH
Q 005319 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYV----------FWNGHEP---------TQGNYYFQD---RYDLVRFIK 114 (702)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv----------~W~~hEp---------~~G~~df~g---~~dl~~fl~ 114 (702)
+|..|. ..+.-++.++++++.||..=-+++ .|+...- .-+.++|.. --|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455553 445678899999999997655544 2442211 113344431 128999999
Q ss_pred HHHHcCcEEEeecCcccc
Q 005319 115 LVQQAGLYVHLRIGPYVC 132 (702)
Q Consensus 115 la~~~gL~vilr~GPyic 132 (702)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 199
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=26.60 E-value=3.2e+02 Score=30.06 Aligned_cols=72 Identities=10% Similarity=0.095 Sum_probs=53.7
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 005319 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (702)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~--~dl~~fl~la~~~gL~vilr~GPyic 132 (702)
+|..|. ..+..++.++++++.+|-.=.+++-|.++. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455553 556678899999999987655555555443 3466777643 38899999999999999998888887
No 200
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.54 E-value=1.2e+02 Score=23.75 Aligned_cols=55 Identities=16% Similarity=0.376 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE
Q 005319 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (702)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~v 123 (702)
|..-.+.+.-+.+.|+|.+.++. +...+.....+.|.-+ +.++.++..++.|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34456788889999999998875 3333234455555433 4889999999999765
No 201
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=26.46 E-value=2.1e+02 Score=30.75 Aligned_cols=108 Identities=14% Similarity=0.195 Sum_probs=65.5
Q ss_pred EEEEEEeeCCCCCcc-cHH---HHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 005319 54 ILISGSIHYPRSTPE-MWP---DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (702)
Q Consensus 54 ~l~sG~~Hy~r~~~~-~W~---~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GP 129 (702)
+-+++..|+..-|.. ..+ ++|++-.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 467888887653221 122 3444444699998888433 3444 7889999999997765444444
Q ss_pred ccc---------cccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 130 YVC---------AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 130 yic---------aEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
..+ +||..--+|.|+.+.=. ....++....+.--++..++++.+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 57877778999976200 0112233344555566666777776
No 202
>PRK06703 flavodoxin; Provisional
Probab=26.43 E-value=3.5e+02 Score=25.55 Aligned_cols=103 Identities=13% Similarity=0.063 Sum_probs=59.6
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 48 ~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
+..-..++++-..+-.-.+|..+++-+..++..-++.....+|-...-. |. .+....+.+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~-~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YP-LFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hH-HHHHHHHHHHHHHHHCCCEEcccC
Confidence 3344455555444433344556777788787666665566566332110 11 022456667778899999887764
Q ss_pred CcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 128 GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 128 GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
+- +....++..-++.+++|.++|++.++
T Consensus 121 ---~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ---LK-----------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---eE-----------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 10 11111234667888899998887776
No 203
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.32 E-value=36 Score=37.98 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCcEE-EeecCcccccccCCCCC--Ceeec
Q 005319 109 LVRFIKLVQQAGLYV-HLRIGPYVCAEWNYGGF--PVWLK 145 (702)
Q Consensus 109 l~~fl~la~~~gL~v-ilr~GPyicaEw~~GG~--P~WL~ 145 (702)
-+.+++.|.+.||.| |.||| ||-|...+|-+ +.|+.
T Consensus 175 aE~Lvr~A~~rGLpv~I~Rpg-~I~gds~tG~~n~~D~~~ 213 (382)
T COG3320 175 AEKLVREAGDRGLPVTIFRPG-YITGDSRTGALNTRDFLT 213 (382)
T ss_pred HHHHHHHHhhcCCCeEEEecC-eeeccCccCccccchHHH
Confidence 467889999999997 78997 77777776653 66664
No 204
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=26.08 E-value=5.1e+02 Score=25.48 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhccccccCCCceEEeccccCccCccccCCcchHHHHHHHHHHH
Q 005319 163 MHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMA 218 (702)
Q Consensus 163 ~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~ 218 (702)
+.+-+.+++..++ ..+.++|.+ .||.|+-.-.+++..+.|++.|-.+-
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~ln 148 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLN 148 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3444555666666 345678887 59998643334556788888665443
No 205
>PRK14565 triosephosphate isomerase; Provisional
Probab=25.76 E-value=1.5e+02 Score=31.20 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=35.7
Q ss_pred HHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
-.+++|++|++.|-+ +|-|.+ -.|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~~vii----GHSERR-~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL----GHSERR-STFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE----Cccccc-CcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 346799999999998 555554 334333 23344444899999999999997
No 206
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.26 E-value=1.3e+02 Score=31.33 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=33.4
Q ss_pred HHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 005319 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (702)
Q Consensus 72 ~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GP 129 (702)
+-+++++++|.+.|.+.-. ..|..+ ++.++++.|+++||.+++-..|
T Consensus 92 ~~i~~~~~~Gadgvii~dl--p~e~~~---------~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDL--LIDYPD---------DLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHHcCCCEEEECCC--CCCcHH---------HHHHHHHHHHHcCCCEEEEECC
Confidence 3478889999999998200 012111 6789999999999998876644
No 207
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=25.22 E-value=1.9e+02 Score=32.41 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=45.5
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEeee--CCCCCCCCCceecccchhHHHHHHHHHHcCcEE-EeecCcccccccCCCC
Q 005319 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVF--WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV-HLRIGPYVCAEWNYGG 139 (702)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~--W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~v-ilr~GPyicaEw~~GG 139 (702)
|=++++.+.+.++.+|+.|++.+-+.++ .....++. |.- ...+.+.++++|.+.|+.+ +|..| ||
T Consensus 145 FGi~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~~~--~~~-a~~~~~~~~~~~~~~g~~l~~ldiG---------GG 212 (394)
T cd06831 145 FGTTLKNCRHLLECAKELDVQIVGVKFHVSSSCKEYQT--YVH-ALSDARCVFDMAEEFGFKMNMLDIG---------GG 212 (394)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCHHH--HHH-HHHHHHHHHHHHHHCCCCCCEEEeC---------CC
Confidence 3367888999999999999998777554 33333332 211 0124467889899888764 67776 88
Q ss_pred CC
Q 005319 140 FP 141 (702)
Q Consensus 140 ~P 141 (702)
+|
T Consensus 213 f~ 214 (394)
T cd06831 213 FT 214 (394)
T ss_pred cC
Confidence 87
No 208
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=25.20 E-value=3.5e+02 Score=30.23 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=55.9
Q ss_pred ceeEEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceeccc--chhHHHHH
Q 005319 36 KASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRFI 113 (702)
Q Consensus 36 ~~~v~~d~~~f~~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g--~~dl~~fl 113 (702)
...|.+ ..+.+.|...+++.|..-- -..+.-.+..+.+|+.|+..++-..|= |+.--|.|.| ...+..+-
T Consensus 104 ~~~~~~--~~~~~g~~~~~~iaGpc~i--E~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~ 175 (360)
T PRK12595 104 DTIVDV--KGEVIGDGNQSFIFGPCSV--ESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILK 175 (360)
T ss_pred CCEEEE--CCEEecCCCeeeEEecccc--cCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHH
Confidence 334555 3466665544456665110 134556677888999999999875443 4444466764 46888999
Q ss_pred HHHHHcCcEEEeec
Q 005319 114 KLVQQAGLYVHLRI 127 (702)
Q Consensus 114 ~la~~~gL~vilr~ 127 (702)
+.|++.||.++-.|
T Consensus 176 ~~~~~~Gl~~~t~v 189 (360)
T PRK12595 176 QVADEYGLAVISEI 189 (360)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999988876
No 209
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=25.10 E-value=1.6e+02 Score=33.84 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=45.1
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 61 HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 61 Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.|.+.|.+.-++.++++.+.|+..|+++.+-|.. +++...++.|+++|+.|.+..
T Consensus 89 G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 89 GYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 3566677778889999999999999999886643 258889999999999886554
No 210
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=25.07 E-value=1.8e+02 Score=32.42 Aligned_cols=65 Identities=11% Similarity=0.248 Sum_probs=47.7
Q ss_pred EEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 51 QKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 51 ~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
+++++++|.. .+ ....+++..+.+++.|+..+.. +..+|+| ..+ ++++.++++++.+..+|+-.|
T Consensus 32 ~~~livt~~~--~~-~~g~~~~v~~~L~~~~i~~~~f----~~v~~np---~~~---~v~~~~~~~~~~~~D~IiaiG 96 (383)
T PRK09860 32 TRTLIVTDNM--LT-KLGMAGDVQKALEERNIFSVIY----DGTQPNP---TTE---NVAAGLKLLKENNCDSVISLG 96 (383)
T ss_pred CEEEEEcCcc--hh-hCccHHHHHHHHHHcCCeEEEe----CCCCCCc---CHH---HHHHHHHHHHHcCCCEEEEeC
Confidence 7888887741 11 2356778888889999864332 5666766 233 788999999999999999997
No 211
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.03 E-value=3.8e+02 Score=28.23 Aligned_cols=83 Identities=10% Similarity=0.070 Sum_probs=50.5
Q ss_pred HHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE--EeecCcccccccCCCCCCeeeccCC
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWLKYVP 148 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~v--ilr~GPyicaEw~~GG~P~WL~~~p 148 (702)
.+.++.+++.|+++|++++-. |+--........+.++|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 568999999999999995432 2211111112337888889999998863 33334442
Q ss_pred CeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 149 GIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 149 ~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
+.+-+.|+.-++..-+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334566666665566665555544
No 212
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=24.53 E-value=1.1e+02 Score=32.21 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCccccc
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi-lr~GPyica 133 (702)
.-++.++++|+.|+ -|+. | .+|.+ +.++.|++.|-..| |-+|||..+
T Consensus 111 ~l~~~i~~l~~~gI-~VSL--F---iDP~~------------~qi~~A~~~GAd~VELhTG~YA~a 158 (237)
T TIGR00559 111 KLCELVKRFHAAGI-EVSL--F---IDADK------------DQISAAAEVGADRIEIHTGPYANA 158 (237)
T ss_pred HHHHHHHHHHHCCC-EEEE--E---eCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 34667788888888 3343 3 56666 77888888888866 888888754
No 213
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=24.28 E-value=1.2e+02 Score=32.90 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=42.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEeee----CCCCCC------CCCcee------cccchhHHHHHHHHHHcCcEEEee
Q 005319 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQGNYY------FQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~----W~~hEp------~~G~~d------f~g~~dl~~fl~la~~~gL~vilr 126 (702)
.+.+.-++.|..|...++|++..++- |.+.-+ ..|.+. +=-..|+.++++.|++.||.||..
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeee
Confidence 36788899999999999999999875 333211 123221 111249999999999999999976
No 214
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=24.10 E-value=4.5e+02 Score=29.99 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=45.7
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 005319 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr 126 (702)
+....+..++.++.+++-|.++=-+++. |-|.|.=-.|.=+ .+.+++++|+++++++|..
T Consensus 180 f~~~~~~le~a~~~a~~~~~~vk~lll~-nP~NPtG~~~s~e---~l~~l~~~~~~~~i~lI~D 239 (447)
T PLN02607 180 FQVTPQALEAAYQEAEAANIRVRGVLIT-NPSNPLGATVQRS---VLEDILDFVVRKNIHLVSD 239 (447)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcCcccCHH---HHHHHHHHHHHCCCEEEEe
Confidence 3566677888888888888886445554 5677765566655 8999999999999999865
No 215
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=24.10 E-value=58 Score=34.26 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=37.8
Q ss_pred HHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
-..++|++|++.|-+ +|-|.+ -.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~vii----GHSERR-~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 76 SAEMLKDLGCKYVII----GHSERR-QYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp BHHHHHHTTESEEEE----SCHHHH-HHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHHhhCCEEEe----cccccc-Cccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 456899999999998 555443 2333 3456899999999999999999997
No 216
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=24.08 E-value=2.4e+02 Score=28.13 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
-..+|+.+|+.|.++|-| +.|..| .+.= .+..+.+.+++.||.++--|
T Consensus 60 L~~DL~~Lk~~G~~~Vvt-----l~~~~E--L~~l---~Vp~L~~~~~~~Gi~~~h~P 107 (168)
T PF05706_consen 60 LQADLERLKDWGAQDVVT-----LLTDHE--LARL---GVPDLGEAAQARGIAWHHLP 107 (168)
T ss_dssp HHHHHHHHHHTT--EEEE------S-HHH--HHHT---T-TTHHHHHHHTT-EEEE--
T ss_pred HHHHHHHHHHCCCCEEEE-----eCcHHH--HHHc---CCccHHHHHHHcCCEEEecC
Confidence 467888999999999977 444433 2222 24467899999999876433
No 217
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.96 E-value=1.9e+02 Score=30.75 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=40.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 005319 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vil 125 (702)
.|.+.=++++++..+.|+..|+++++.+. ...+...++.|++.|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEE
Confidence 34555688999999999999999887664 23788999999999998775
No 218
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=23.39 E-value=6.6e+02 Score=25.27 Aligned_cols=124 Identities=21% Similarity=0.284 Sum_probs=64.0
Q ss_pred EEeEEEEEEeeCCC---CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHH-HHHHHHcCcE-EEe
Q 005319 51 QKRILISGSIHYPR---STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRF-IKLVQQAGLY-VHL 125 (702)
Q Consensus 51 ~p~~l~sG~~Hy~r---~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~f-l~la~~~gL~-vil 125 (702)
||++.++-+|=.-. -|--.|...+ .+.+|++.|.. -|+|+.-++.. .++.++..=. ++|
T Consensus 2 k~~v~YGsSItqG~~Asrpg~~~~~~~--aR~l~~~~iNL--------------GfsG~~~le~~~a~~ia~~~a~~~~l 65 (178)
T PF14606_consen 2 KRWVAYGSSITQGACASRPGMAYPAIL--ARRLGLDVINL--------------GFSGNGKLEPEVADLIAEIDADLIVL 65 (178)
T ss_dssp -EEEEEE-TT-TTTT-SSGGGSHHHHH--HHHHT-EEEEE--------------E-TCCCS--HHHHHHHHHS--SEEEE
T ss_pred CeEEEECChhhcCCCCCCCcccHHHHH--HHHcCCCeEee--------------eecCccccCHHHHHHHhcCCCCEEEE
Confidence 67888888887533 2445698877 67889998877 36776555544 4455554334 346
Q ss_pred ecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec-cccCccCccccCC
Q 005319 126 RIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ-IENEFGPVEWDIG 204 (702)
Q Consensus 126 r~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q-iENEyg~~~~~~~ 204 (702)
..||. .+...|.+.+..+++.|.+ .| ..=|||+++ +-.+-+.....-.
T Consensus 66 d~~~N-----------------------~~~~~~~~~~~~fv~~iR~---~h-----P~tPIllv~~~~~~~~~~~~~~~ 114 (178)
T PF14606_consen 66 DCGPN-----------------------MSPEEFRERLDGFVKTIRE---AH-----PDTPILLVSPIPYPAGYFDNSRG 114 (178)
T ss_dssp EESHH-----------------------CCTTTHHHHHHHHHHHHHT---T------SSS-EEEEE----TTTTS--TTS
T ss_pred EeecC-----------------------CCHHHHHHHHHHHHHHHHH---hC-----CCCCEEEEecCCccccccCchHH
Confidence 77663 1334577777777665522 12 345999999 4444432211112
Q ss_pred cchHHHHHHHHHHHHhc
Q 005319 205 APGKAYAKWAAQMAVGL 221 (702)
Q Consensus 205 ~~~~~y~~~l~~~~~~~ 221 (702)
..-.++.+.+++.+++.
T Consensus 115 ~~~~~~~~~~r~~v~~l 131 (178)
T PF14606_consen 115 ETVEEFREALREAVEQL 131 (178)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 23456667777766554
No 219
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.37 E-value=30 Score=34.58 Aligned_cols=67 Identities=25% Similarity=0.415 Sum_probs=43.2
Q ss_pred EEEEEEeeCCCC---CcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 005319 54 ILISGSIHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 54 ~l~sG~~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr 126 (702)
..-+|--.|.|+ .|-.-+ +-+.++|++.+-+-. ..---.--|||-...+|.+|+++|+++||.+-|.
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDT---aiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDT---AIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEEec---ccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 344555556663 333333 346788888654311 1122234699988889999999999999987654
No 220
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=23.26 E-value=2.4e+02 Score=33.71 Aligned_cols=110 Identities=11% Similarity=0.150 Sum_probs=71.4
Q ss_pred EEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc-
Q 005319 51 QKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP- 129 (702)
Q Consensus 51 ~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GP- 129 (702)
++-+.+++..|+.+.+.+.=-++|++-.++|..-+-|=.+++ -+ .+.+|++.+++.++.||.-.-|
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd----------~~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYD----------EE---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCC----------HH---HHHHHHHHHhcCCCCEEEEeeec
Confidence 445788888887665544434566666789999999955544 33 7889999998888888887776
Q ss_pred -------ccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 130 -------YVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 130 -------yicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
++..+|..-=+|.|+.+.=. ... +...++++--++..++++.+.
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~-~~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMR-AVE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHH-hcC-CchHHHHHHHHHHHHHHHHHH
Confidence 33234555557999876210 011 223456666666666666665
No 221
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=23.25 E-value=2.9e+02 Score=28.35 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=66.0
Q ss_pred cccHHHHHHHHHHCCCCE-EEE--eeeCCCCCC---CCCc--eec-----------cc--chhHHHHHHHHHHcCcEEEe
Q 005319 67 PEMWPDLIQKAKDGGLDV-IQT--YVFWNGHEP---TQGN--YYF-----------QD--RYDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~-V~~--yv~W~~hEp---~~G~--~df-----------~g--~~dl~~fl~la~~~gL~vil 125 (702)
++.-.+.++++|+.|+.+ |+| |+.|...+. .-.. +|. +| +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 455578899999999863 444 333321111 1111 221 22 23455667778888888888
Q ss_pred ecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccc-----------
Q 005319 126 RIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN----------- 194 (702)
Q Consensus 126 r~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiEN----------- 194 (702)
|. |.| |++ ++++.-++++.+|++.+. +. +|-...--+
T Consensus 133 R~-~vI----------------Pg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 133 RL-PLI----------------PGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred EE-EEE----------------CCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCC
Confidence 86 222 443 234555555555544331 11 121111111
Q ss_pred CccCccccCCcchHHHHHHHHHHHHhcCCCc
Q 005319 195 EFGPVEWDIGAPGKAYAKWAAQMAVGLNTGV 225 (702)
Q Consensus 195 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 225 (702)
+|-.. +...+..+.++.+++++++.|+.+
T Consensus 181 ~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22111 112457889999999999988765
No 222
>PRK01060 endonuclease IV; Provisional
Probab=23.16 E-value=4.2e+02 Score=27.59 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=37.9
Q ss_pred CcccHHHHHHHHHHCCCCE----EEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcE-EEeecC
Q 005319 66 TPEMWPDLIQKAKDGGLDV----IQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY-VHLRIG 128 (702)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~----V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~-vilr~G 128 (702)
.++.-+..-+++++.|+.. +......|+-.|.|...+.+ ...+.+.+++|++.|.. |++.||
T Consensus 45 ~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s-~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 45 EELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKS-RDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3333333444667888873 22222245655655444443 45789999999999997 456775
No 223
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=23.04 E-value=3.1e+02 Score=32.41 Aligned_cols=73 Identities=26% Similarity=0.483 Sum_probs=51.2
Q ss_pred CCEEeEEEEEEee--CCC-CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCC---------CceecccchhHHHHHHHH
Q 005319 49 NGQKRILISGSIH--YPR-STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ---------GNYYFQDRYDLVRFIKLV 116 (702)
Q Consensus 49 dG~p~~l~sG~~H--y~r-~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~---------G~~df~g~~dl~~fl~la 116 (702)
+|+| ++++|-+- |-| |.+|.=++.+++++.+|++ ||.+ .|.. --|+-+-...|..+|+.|
T Consensus 12 ~g~r-~fiCGVvEGFYGRPWt~EQRK~LFrrl~~~gl~---tYlY----APKDDyKHR~~WRElY~vEEa~~L~~Li~aA 83 (891)
T KOG3698|consen 12 VGNR-KFICGVVEGFYGRPWTPEQRKHLFRRLNQLGLT---TYLY----APKDDYKHRSLWRELYNVEEATYLRNLIEAA 83 (891)
T ss_pred cccc-eeEEEeeccccCCCCCHHHHHHHHHHHHhcccc---eeee----cccchhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444 34566665 777 7899999999999999998 5432 2322 123333344788999999
Q ss_pred HHcCcEEEeecCc
Q 005319 117 QQAGLYVHLRIGP 129 (702)
Q Consensus 117 ~~~gL~vilr~GP 129 (702)
+++++..+-.+.|
T Consensus 84 ke~~i~F~YAiSP 96 (891)
T KOG3698|consen 84 KENNINFVYAISP 96 (891)
T ss_pred HhcCceEEEEcCC
Confidence 9999998866544
No 224
>PLN03036 glutamine synthetase; Provisional
Probab=23.02 E-value=2.1e+02 Score=32.71 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccc----------hhH-HHHH-HHHHHcCcEEEeecCcccccccCC
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR----------YDL-VRFI-KLVQQAGLYVHLRIGPYVCAEWNY 137 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~----------~dl-~~fl-~la~~~gL~vilr~GPyicaEw~~ 137 (702)
-++..+.+.++|++.-.+ +||-.||+|.|.=. ..+ +.++ ++|+++|+.+-.-|=|+. ++|+.
T Consensus 232 ~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~G 305 (432)
T PLN03036 232 SDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWNG 305 (432)
T ss_pred HHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcCC
Confidence 344566789999998887 99999999987611 111 2222 567889999988888743 56766
Q ss_pred CC
Q 005319 138 GG 139 (702)
Q Consensus 138 GG 139 (702)
-|
T Consensus 306 SG 307 (432)
T PLN03036 306 AG 307 (432)
T ss_pred CC
Confidence 55
No 225
>PLN02389 biotin synthase
Probab=22.82 E-value=1.2e+02 Score=34.05 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=33.4
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCCCCCce-------ecccchhHHHHHHHHHHcCcEEE
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-------YFQDRYDLVRFIKLVQQAGLYVH 124 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~-------df~g~~dl~~fl~la~~~gL~vi 124 (702)
=++.++++|++|++.+.. ++ |..|..| +|+ +..+.++.|++.||.|.
T Consensus 177 ~~E~l~~LkeAGld~~~~----~L-eTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNH----NL-DTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEe----ee-cCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 478899999999998877 33 3222222 344 66688999999999763
No 226
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=22.77 E-value=1.4e+02 Score=32.76 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=38.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcE
Q 005319 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY 122 (702)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~ 122 (702)
+....|+..-.-.+.+||-+|.+|-+|+..+..= |++.||...+..--+
T Consensus 130 ~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~---------d~e~~Lsdl~~APe~ 178 (410)
T KOG1412|consen 130 VSNPTWENHHAIFEKAGFTTVATYPYWDAENKCV---------DLEGFLSDLESAPEG 178 (410)
T ss_pred ecCCchhHHHHHHHHcCCceeeeeeeecCCCcee---------cHHHHHHHHhhCCCC
Confidence 3455699999999999999999999999765443 677888877775544
No 227
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=22.64 E-value=78 Score=32.52 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=20.8
Q ss_pred CCCCC-CeEEEcCC----CceEEEEECCeecccccc
Q 005319 639 PPGND-PLALDMGA----MGKGMVWINGQSIGRHWP 669 (702)
Q Consensus 639 p~~~D-~tfLd~sg----wgKG~vwVNG~nLGRYW~ 669 (702)
|+++. +|||.|-- =.+|.|||||++|.|.=.
T Consensus 36 pSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 36 PSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc
Confidence 44432 45655322 378999999999998754
No 228
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=22.61 E-value=8e+02 Score=25.15 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEeeeCC-CCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-CCCeeeccCC
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWN-GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-GFPVWLKYVP 148 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~-~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~G-G~P~WL~~~p 148 (702)
++.++.|+++|++++.+ . =||-.- |..-|.+.++.+++.|+ |++++--+.. ..|.-+.+..
T Consensus 63 ~~~~~~l~~~G~d~~~l----aNNH~fD~------G~~gl~~t~~~l~~a~i-------~~~g~~~~~~~~~~~~i~~~~ 125 (239)
T smart00854 63 PENAAALKAAGFDVVSL----ANNHSLDY------GEEGLLDTLAALDAAGI-------AHVGAGRNLAEARKPAIVEVK 125 (239)
T ss_pred HHHHHHHHHhCCCEEEe----ccCccccc------chHHHHHHHHHHHHCCC-------CEeeCCCChHHhhCcEEEEEC
Q ss_pred CeE----------------------eecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccccCCcc
Q 005319 149 GIE----------------------FRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAP 206 (702)
Q Consensus 149 ~~~----------------------~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~ 206 (702)
+++ +...++...+.++++++++-+. + .+ -|++.+...||...
T Consensus 126 g~kIg~ig~t~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~lr~~-~--D~------vIv~~H~G~e~~~~------- 189 (239)
T smart00854 126 GIKIALLAYTYGTNNGWAASKDRPGVALLPDLDREKILADIARARKK-A--DV------VIVSLHWGVEYQYE------- 189 (239)
T ss_pred CEEEEEEEEEcCCCCCcccCCCCCCeeecCcCCHHHHHHHHHHHhcc-C--CE------EEEEecCccccCCC-------
Q ss_pred hHHHHHHHHHHHHhcCCCc
Q 005319 207 GKAYAKWAAQMAVGLNTGV 225 (702)
Q Consensus 207 ~~~y~~~l~~~~~~~g~~v 225 (702)
...+.+.+++.+.+.|+++
T Consensus 190 p~~~~~~~A~~l~~~G~Dv 208 (239)
T smart00854 190 PTDEQRELAHALIDAGADV 208 (239)
T ss_pred CCHHHHHHHHHHHHcCCCE
No 229
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=22.52 E-value=58 Score=33.22 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=52.0
Q ss_pred EEeEEEEEEeeCC-CCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCC--------CCC----ceecccchhHHHHHHHHH
Q 005319 51 QKRILISGSIHYP-RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--------TQG----NYYFQDRYDLVRFIKLVQ 117 (702)
Q Consensus 51 ~p~~l~sG~~Hy~-r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp--------~~G----~~df~g~~dl~~fl~la~ 117 (702)
.-+.+.-|.-+.. ++|.+.|.+.++++++.| ..+.++|.-.|. .++ ..++.|..+|..++.+.+
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 3444444554533 489999999999999998 456677876661 122 588888899999999999
Q ss_pred HcCcEEEeecCc
Q 005319 118 QAGLYVHLRIGP 129 (702)
Q Consensus 118 ~~gL~vilr~GP 129 (702)
...+.|-...||
T Consensus 183 ~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 183 RADLVIGNDTGP 194 (247)
T ss_dssp TSSEEEEESSHH
T ss_pred cCCEEEecCChH
Confidence 999999888887
No 230
>PRK04302 triosephosphate isomerase; Provisional
Probab=22.50 E-value=1.6e+02 Score=30.23 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=41.6
Q ss_pred eeCCCCCcccH--HHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 60 IHYPRSTPEMW--PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 60 ~Hy~r~~~~~W--~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
.|+....+... +.-++.+|++|++.|-+ .+-|.. -.|. .+.++++.|+++||.+|+..|
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii----~~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~ 122 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI----NHSERR---LTLA---DIEAVVERAKKLGLESVVCVN 122 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE----eccccc---cCHH---HHHHHHHHHHHCCCeEEEEcC
Confidence 57655433322 23488999999999988 333432 2343 588999999999999998775
No 231
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=22.12 E-value=1.5e+02 Score=32.78 Aligned_cols=47 Identities=21% Similarity=0.553 Sum_probs=39.6
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
.++.+..+| |+..++. +-.||.| .++ -|.+-+++|+++++..||..|
T Consensus 47 ydqV~~~Lk--g~~~~E~----~GVEPNP---~~~---Tv~kaV~i~kee~idflLAVG 93 (384)
T COG1979 47 YDQVVEALK--GIEVIEF----GGVEPNP---RLE---TLMKAVEICKEENIDFLLAVG 93 (384)
T ss_pred HHHHHHHhc--CceEEEe----cCCCCCc---hHH---HHHHHHHHHHHcCceEEEEec
Confidence 456666677 9988888 9999999 344 788999999999999999996
No 232
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=22.12 E-value=3.2e+02 Score=30.66 Aligned_cols=91 Identities=19% Similarity=0.292 Sum_probs=57.3
Q ss_pred CCEEeEEEE-EEeeCCC-----CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHH--HHcC
Q 005319 49 NGQKRILIS-GSIHYPR-----STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLV--QQAG 120 (702)
Q Consensus 49 dG~p~~l~s-G~~Hy~r-----~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la--~~~g 120 (702)
+|...-++| |+|.++- +..+.-.+.++.+=+.|+|.|+| .|..|--+- +.||.-| .-+.
T Consensus 9 ~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidT--A~~Yh~g~s-----------E~~lgkaL~~~~R 75 (391)
T COG1453 9 TGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDT--AWPYHGGES-----------EEFLGKALKDGYR 75 (391)
T ss_pred CCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEee--cccccCCCc-----------hHHHHHHhhhccc
Confidence 444444443 6777654 25566778889999999999999 677764332 2344433 2345
Q ss_pred cEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 005319 121 LYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 121 L~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~~~~~~~~~l~~~i~ 175 (702)
-.|.|.+ -+|.|..++. +.++++|++=++++.
T Consensus 76 ekv~LaT-----------Klp~~~~~~~------------edm~r~fneqLekl~ 107 (391)
T COG1453 76 EKVKLAT-----------KLPSWPVKDR------------EDMERIFNEQLEKLG 107 (391)
T ss_pred ceEEEEe-----------ecCCccccCH------------HHHHHHHHHHHHHhC
Confidence 5677776 5788877643 456677666555554
No 233
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=22.05 E-value=1.2e+02 Score=33.48 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=34.7
Q ss_pred HHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccc----hhHHHHHHHHHHcCcE
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR----YDLVRFIKLVQQAGLY 122 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~----~dl~~fl~la~~~gL~ 122 (702)
++.|+.||++|+|.|++. ...-.+...+.-|+ .++.+.++.+++.|+.
T Consensus 100 ~e~l~~l~~~Gv~risiG----vqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG----VQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred HHHHHHHHHcCCCEEEEe----cccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 577999999999999993 33333433333332 3788899999999985
No 234
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=22.04 E-value=1.9e+02 Score=28.55 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=34.8
Q ss_pred HHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee-cCc
Q 005319 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR-IGP 129 (702)
Q Consensus 72 ~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr-~GP 129 (702)
..++.++++|.+.|.+ +.|+.+ ..+.++++.|+++|+.+++- ++|
T Consensus 68 ~~~~~~~~aGad~i~~-----h~~~~~--------~~~~~~i~~~~~~g~~~~v~~~~~ 113 (202)
T cd04726 68 LEAEMAFKAGADIVTV-----LGAAPL--------STIKKAVKAAKKYGKEVQVDLIGV 113 (202)
T ss_pred HHHHHHHhcCCCEEEE-----EeeCCH--------HHHHHHHHHHHHcCCeEEEEEeCC
Confidence 3568899999999998 444422 25789999999999999875 665
No 235
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=21.72 E-value=1.9e+02 Score=29.80 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=39.1
Q ss_pred EeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 59 SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 59 ~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
++|--=..|+.| ++++.++|.+.|.+ |-|..+ ++.++|+.++++|+++-+-..
T Consensus 62 dvHLMv~~p~~~---i~~~~~~gad~i~~-----H~Ea~~---------~~~~~l~~ik~~g~k~Glaln 114 (220)
T PRK08883 62 DVHLMVKPVDRI---IPDFAKAGASMITF-----HVEASE---------HVDRTLQLIKEHGCQAGVVLN 114 (220)
T ss_pred EEEeccCCHHHH---HHHHHHhCCCEEEE-----cccCcc---------cHHHHHHHHHHcCCcEEEEeC
Confidence 566443455554 57788899999998 667544 788999999999998655443
No 236
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.71 E-value=2.2e+02 Score=31.63 Aligned_cols=67 Identities=18% Similarity=0.357 Sum_probs=49.0
Q ss_pred CEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 50 GQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 50 G~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
|++.+++.|..... ....+++..+.+++.|+... .+.-.+|+|- .+ ++++.++++++.+..+|+-.|
T Consensus 25 g~r~livt~~~~~~--~~g~~~~v~~~L~~~~~~~~----~~~~v~~~p~---~~---~v~~~~~~~~~~~~D~IiavG 91 (380)
T cd08185 25 GKKALIVTGNGSSK--KTGYLDRVIELLKQAGVEVV----VFDKVEPNPT---TT---TVMEGAALAREEGCDFVVGLG 91 (380)
T ss_pred CCeEEEEeCCCchh--hccHHHHHHHHHHHcCCeEE----EeCCccCCCC---HH---HHHHHHHHHHHcCCCEEEEeC
Confidence 57888888765421 13567777788899998643 2356677662 23 788999999999999999997
No 237
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.63 E-value=1.2e+02 Score=33.87 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=35.2
Q ss_pred HHHHHHHHHCCCCEEEEeeeCCCCCCCCCceeccc----chhHHHHHHHHHHcCcEE
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD----RYDLVRFIKLVQQAGLYV 123 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g----~~dl~~fl~la~~~gL~v 123 (702)
++.|+.||++|+|.|++ ....-.+-..+.-| ..++.+.++.|++.|+..
T Consensus 107 ~e~l~~Lk~~Gv~risi----GvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~ 159 (378)
T PRK05660 107 ADRFVGYQRAGVNRISI----GVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRS 159 (378)
T ss_pred HHHHHHHHHcCCCEEEe----ccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 48899999999999999 44443333333322 237888899999999953
No 238
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=21.63 E-value=2.2e+02 Score=30.75 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=54.6
Q ss_pred HHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcE--EEeecCc--------ccccccCCCCCCe
Q 005319 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--VHLRIGP--------YVCAEWNYGGFPV 142 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~--vilr~GP--------yicaEw~~GG~P~ 142 (702)
.|++-.++|.+.+-|=. .||.+ .+.+|++.|++.|+. |+...-| ++ ++...-++|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~----------~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQF----------FFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeeccc----------ccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 45555578888777733 24444 888999999999955 5555545 34 5777778999
Q ss_pred eeccCCCeEeecCC-hhHHHHHHHHHHHHHHHHH
Q 005319 143 WLKYVPGIEFRTDN-GPFKAAMHKFTEKIVSMMK 175 (702)
Q Consensus 143 WL~~~p~~~~R~~d-~~~~~~~~~~~~~l~~~i~ 175 (702)
|+.+.=+ .. .+| ....++--++..++++.+.
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~ 265 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILS 265 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9976311 01 123 2344455566666777666
No 239
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=21.53 E-value=1.6e+02 Score=32.06 Aligned_cols=106 Identities=20% Similarity=0.359 Sum_probs=56.6
Q ss_pred CEEEEeeeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHH
Q 005319 83 DVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKA 161 (702)
Q Consensus 83 N~V~~yv~W~~hEp~-~G~~df~g~~dl~~fl~la~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~~~~ 161 (702)
+.|.++|.|++|=-. | =...++.|+++|..|+= -.|. ||+.| ..|+.. +.-+..+..
T Consensus 27 ~yiD~fvywsh~~i~iP----------~~~widaAHrnGV~vLG---Tiif-e~~~~--~~~~~~---ll~~~~~g~--- 84 (311)
T PF03644_consen 27 QYIDIFVYWSHGLITIP----------PAGWIDAAHRNGVKVLG---TIIF-EWGGG--AEWCEE---LLEKDEDGS--- 84 (311)
T ss_dssp GG-SEEEET-TBSSE-------------HHHHHHHHHTT--EEE---EEEE-EEE----HHHHHH---HT---TTS----
T ss_pred cceeeEeecccccccCC----------CchhHHHHHhcCceEEE---EEEe-cCCch--HHHHHH---HHcCCcccc---
Confidence 567889999965422 1 12689999999999952 2333 77643 355532 100122222
Q ss_pred HHHHHHHHHHHHHHhccccccCCCceEEeccccCccCccccCCcchHHHHHHHHHHHHh
Q 005319 162 AMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVG 220 (702)
Q Consensus 162 ~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 220 (702)
..+.++|+++.+.+.+ + | +.+-+|+..+... ....-.++++.|++.+++
T Consensus 85 --~~~A~kLi~ia~~yGF---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~l~~~~~~ 133 (311)
T PF03644_consen 85 --FPYADKLIEIAKYYGF---D-G--WLINIETPLSGPE--DAENLIDFLKYLRKEAHE 133 (311)
T ss_dssp ---HHHHHHHHHHHHHT------E--EEEEEEESSTTGG--GHHHHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHcCC---C-c--eEEEecccCCchh--HHHHHHHHHHHHHHHhhc
Confidence 2346667777764432 2 3 7888899876410 012345688888888877
No 240
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=21.50 E-value=79 Score=33.21 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccc
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAE 134 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi-lr~GPyicaE 134 (702)
-.+.++++|+.|+ -|+. +.+|.+ +.++.|++.|-..| |-+|||..+.
T Consensus 113 l~~~i~~L~~~gI-rvSL-----FiDP~~------------~qi~~A~~~Gad~VELhTG~yA~a~ 160 (239)
T PF03740_consen 113 LKPVIKRLKDAGI-RVSL-----FIDPDP------------EQIEAAKELGADRVELHTGPYANAF 160 (239)
T ss_dssp HHHHHHHHHHTT--EEEE-----EE-S-H------------HHHHHHHHTT-SEEEEETHHHHHHS
T ss_pred HHHHHHHHHhCCC-EEEE-----EeCCCH------------HHHHHHHHcCCCEEEEehhHhhhhc
Confidence 3556666677666 3333 234444 56677777777655 6777776543
No 241
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.41 E-value=1.6e+02 Score=29.40 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=38.5
Q ss_pred HHHHHHHCCCCEEE-----EeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 005319 73 LIQKAKDGGLDVIQ-----TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 73 ~l~k~ka~G~N~V~-----~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr 126 (702)
..+.+++.|+.+|= |-|+|.--+..| .+.+.++.+++.|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35679999999885 468999999888 8999999999999998654
No 242
>PLN02231 alanine transaminase
Probab=21.27 E-value=3e+02 Score=32.32 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=42.8
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 005319 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 64 r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr 126 (702)
....+..++.++..+..|.++--+++. |-|.|.=-+++-+ .+.+++++|+++|++||..
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 445555666666666667666445554 7777776667666 8999999999999999865
No 243
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=21.19 E-value=9.2e+02 Score=26.51 Aligned_cols=193 Identities=18% Similarity=0.116 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHcCcEEE--eecCcccccccCCCCCCeeeccCC-CeEeecCChhHHHHHHHHHHHHHHHHHhccccccC
Q 005319 107 YDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYGGFPVWLKYVP-GIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQ 183 (702)
Q Consensus 107 ~dl~~fl~la~~~gL~vi--lr~GPyicaEw~~GG~P~WL~~~p-~~~~R~~d~~~~~~~~~~~~~l~~~i~~~~~~~~~ 183 (702)
+.+..+...|++.||+.+ +|=.+ + ++=.-+.||+.++ ++.+|-.|...--...+-++.+.+.+++. ..
T Consensus 76 Nh~r~tAavA~~lGl~~v~ile~~~---~--~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~----g~ 146 (323)
T COG2515 76 NHVRQTAAVAAKLGLKCVLILENIE---A--NYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQ----GG 146 (323)
T ss_pred hHHHHHHHHHHhcCCcEEEEEeccc---c--ccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhc----CC
Confidence 577888888999999954 45322 1 2233457887653 55566554433222344455566666622 23
Q ss_pred CCceEEeccccCccCccccCCcchHHHHHHHHHHHHhcCCCcceEeecCCCCCCCcccCCCCccccccCCCCCCCCcccc
Q 005319 184 GGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWT 263 (702)
Q Consensus 184 gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~P~~~~ 263 (702)
..-||-.+=+|=+|.++ |-.+..+-.++++++ . .++. ++.|.++.... .|.- ..+....++.+++.-
T Consensus 147 kpyvIp~GG~~~~g~lG--yv~~a~Ei~~Q~~~~-~--~fD~-vVva~gs~gT~------AGl~-~g~~~~~~~~~ViG~ 213 (323)
T COG2515 147 KPYVIPEGGSSPLGALG--YVRLALEIAEQAEQL-L--KFDS-VVVAPGSGGTH------AGLL-VGLAQLGPDVEVIGI 213 (323)
T ss_pred CCcEeccCCcCcccccc--HHHHHHHHHHHHhhc-c--CCCE-EEEeCCCcchH------HHHH-HHhhhccCCCceEEE
Confidence 34455555556655442 111223333333332 1 2222 22333321100 0000 111111122222211
Q ss_pred ccccccccccCCCCCCCChHHHHHHHHHHHHhCCceeeeeeeccCCCCCCCCCCCccccccCCCCCCccCCCCchhHHHH
Q 005319 264 EAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHL 343 (702)
Q Consensus 264 E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDYdApl~E~G~~~~~Ky~~l 343 (702)
.-.++.+.....+..+....+..+ |..+-+...+++||..| ++|.++.+-|.++
T Consensus 214 -------------~v~~~~~~~~~qv~~L~~~~a~~~-----------~~~~~~~v~~~~dy~~~--~Yg~p~~e~~e~i 267 (323)
T COG2515 214 -------------DVSADPEKLKEQVLNLAQATAELL-----------GLGSEADVLLSDDYHHP--GYGKPNEEDIEAI 267 (323)
T ss_pred -------------eecCCHHHHHHHHHHHHHHHHHHc-----------CCCCCceEEEEecccCC--ccCCcCHHHHHHH
Confidence 123445555555554444333221 11122356799999998 8999987777777
Q ss_pred HHHH
Q 005319 344 RDLH 347 (702)
Q Consensus 344 r~l~ 347 (702)
|.+.
T Consensus 268 ~~~~ 271 (323)
T COG2515 268 KLLA 271 (323)
T ss_pred HHHH
Confidence 7653
No 244
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=21.11 E-value=1.2e+02 Score=31.63 Aligned_cols=88 Identities=20% Similarity=0.167 Sum_probs=60.7
Q ss_pred eEEEEEEeeCCC-CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCC-----------CCCceecccchhHHHHHHHHHHcC
Q 005319 53 RILISGSIHYPR-STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-----------TQGNYYFQDRYDLVRFIKLVQQAG 120 (702)
Q Consensus 53 ~~l~sG~~Hy~r-~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp-----------~~G~~df~g~~dl~~fl~la~~~g 120 (702)
+.+..|+-+..| ++.+.|.+.++++++.|++.|-+. .-.|. .+...++.|..+|.+++.+.++..
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 444444444444 788999999999998888766442 22221 235577888889999999999999
Q ss_pred cEEEeecCcccccccCCCCCCeeec
Q 005319 121 LYVHLRIGPYVCAEWNYGGFPVWLK 145 (702)
Q Consensus 121 L~vilr~GPyicaEw~~GG~P~WL~ 145 (702)
+.|-...||.--|- .=|.|....
T Consensus 201 l~I~~Dsg~~HlA~--a~~~p~i~l 223 (279)
T cd03789 201 LVVTNDSGPMHLAA--ALGTPTVAL 223 (279)
T ss_pred EEEeeCCHHHHHHH--HcCCCEEEE
Confidence 99999998855442 224555544
No 245
>PRK08175 aminotransferase; Validated
Probab=21.09 E-value=1.8e+02 Score=32.08 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=35.4
Q ss_pred cHHHHHHHH-HHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 005319 69 MWPDLIQKA-KDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 69 ~W~~~l~k~-ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr 126 (702)
.|.+.|+++ ++.+-++--+++- +-|-|.=-.++-+ .+.+++++|+++|+++|..
T Consensus 149 ~~~~~l~~~l~~~~~~~~~v~i~-~p~NPtG~~~~~~---~~~~i~~~a~~~~i~ii~D 203 (395)
T PRK08175 149 DFFNELERAIRESYPKPKMMILG-FPSNPTAQCVELE---FFEKVVALAKRYDVLVVHD 203 (395)
T ss_pred CcHHHHHHHHhhccCCceEEEEe-CCCCCCCCCCCHH---HHHHHHHHHHHcCcEEEEe
Confidence 466777654 4433333333443 4466665556655 7899999999999999875
No 246
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.01 E-value=82 Score=34.55 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCCEEEEeeeCCCC------CCCCCceecccchhHHHHHHHHHHcCcEE
Q 005319 71 PDLIQKAKDGGLDVIQTYVFWNGH------EPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (702)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~W~~h------Ep~~G~~df~g~~dl~~fl~la~~~gL~v 123 (702)
++.|++||++|++.+-. .-.... .-.|+...++ +..+.++.|++.||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 67899999999998741 001111 1123333333 4568999999999965
No 247
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.90 E-value=1.9e+02 Score=30.74 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=48.1
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHH-HcCcEEEeecC
Q 005319 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ-QAGLYVHLRIG 128 (702)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~-~~gL~vilr~G 128 (702)
.+...+.=.+..+.+-++|++.|++..+-...+...|...|.....++++.++.+ +.-+-+++|++
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 3467777888999999999999999888776556667777775555666666553 44555667775
No 248
>PRK08227 autoinducer 2 aldolase; Validated
Probab=20.85 E-value=1.1e+02 Score=32.57 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=37.3
Q ss_pred HHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 005319 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (702)
Q Consensus 72 ~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vil 125 (702)
-..+.+-.+|..+|.+.|+|.- ++.-+-..+|.+..+.|++.||-+++
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs------~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGS------EYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 3466678999999999999972 12222345899999999999999886
No 249
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=20.84 E-value=1.3e+02 Score=33.40 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=38.4
Q ss_pred HHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 74 l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
.+.+-.+|..+|.+.|+|.- .+...-..+|.+..+.|++.||-+|++.
T Consensus 152 VedAlrLGAdAV~~tvy~Gs------~~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGS------EESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred HHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 56678999999999999982 2223344589999999999999999864
No 250
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.72 E-value=1.4e+02 Score=31.31 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHCCCCEEEEeee-CCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 005319 69 MWPDLIQKAKDGGLDVIQTYVF-WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (702)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~-W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~G 128 (702)
..++.|+.++++|+..|.+.-. +......+-.++.. ...+.++.++|+++|+.+.+.+-
T Consensus 100 ~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRF-IDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHH-HHHHHHHHHHHHHhCCEEEEeec
Confidence 3667889999999999975211 00000001111110 13678889999999999999874
No 251
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.57 E-value=2.2e+02 Score=28.36 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=33.3
Q ss_pred HHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 005319 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (702)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr 126 (702)
.+++++++|.+.|.+..... ...+.++++.|+++|+.+++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 68889999999999854321 136789999999999999876
No 252
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=20.21 E-value=80 Score=34.82 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCCEEE-----EeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE
Q 005319 70 WPDLIQKAKDGGLDVIQ-----TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~-----~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~v 123 (702)
-++.|+++|++|++.+. ++..--.+.-.++....+ +..+.++.|++.||.+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 35679999999997554 211111122234433333 5558999999999975
No 253
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.15 E-value=1.4e+02 Score=27.40 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=31.1
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE
Q 005319 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (702)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vi 124 (702)
.+++...+.++.++++|+..|=.. +| ..-++++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 477889999999999998877551 11 245689999999999876
No 254
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=20.07 E-value=3.1e+02 Score=25.31 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=46.3
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 005319 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (702)
Q Consensus 48 ~dG~p~~l~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~ 127 (702)
+.|.-+++.+|.. ...-.++.+++-++.+.+.|+-++-+.+-=..+ .-| +.++++|.+++|-+|.=|
T Consensus 40 l~~gElvlttg~~-~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP-----------~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 40 LRGGELVLTTGYA-LRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIP-----------EEIIELADELGLPLIEIP 106 (123)
T ss_pred CCCCeEEEECCcc-cCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCC-----------HHHHHHHHHcCCCEEEeC
Confidence 5555555555533 223245678999999999999988885542222 222 589999999999998766
No 255
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.02 E-value=2e+02 Score=30.65 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCCEEEEeeeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 005319 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (702)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~W~~hEp~~G~~df~g~~dl~~fl~la~~~gL~vilr~GP 129 (702)
-++-+++++++|++.|-+ .-+|-+ ..++|++.|+++||..|+=..|
T Consensus 108 ~e~F~~~~~~aGvdgvii-----pDLP~e---------e~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 108 INKFIKKISQAGVKGLII-----PDLPYE---------ESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred HHHHHHHHHHcCCeEEEe-----cCCCHH---------HHHHHHHHHHHcCCCEEEEECC
Confidence 356789999999999998 344433 5789999999999987755433
Done!