Query 005321
Match_columns 702
No_of_seqs 282 out of 1801
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 21:38:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 9E-175 2E-179 1373.5 39.7 673 8-683 71-756 (785)
2 PTZ00272 heat shock protein 83 100.0 8E-168 2E-172 1435.7 68.0 692 10-702 3-701 (701)
3 PTZ00130 heat shock protein 90 100.0 1E-166 3E-171 1423.2 66.0 668 9-681 65-766 (814)
4 KOG0019 Molecular chaperone (H 100.0 3E-164 6E-169 1333.0 50.8 619 7-678 32-652 (656)
5 COG0326 HtpG Molecular chapero 100.0 3E-160 7E-165 1328.6 58.7 615 7-671 2-622 (623)
6 PRK05218 heat shock protein 90 100.0 5E-141 1E-145 1215.0 63.7 605 9-672 3-613 (613)
7 PRK14083 HSP90 family protein; 100.0 2E-129 4E-134 1109.0 59.3 573 11-674 2-596 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 3E-130 6E-135 1104.3 47.6 492 189-680 1-504 (531)
9 COG0323 MutL DNA mismatch repa 99.8 4.2E-20 9.2E-25 214.0 15.1 287 18-402 4-333 (638)
10 TIGR00585 mutl DNA mismatch re 99.7 3.4E-16 7.5E-21 168.2 19.5 153 27-206 17-181 (312)
11 PRK00095 mutL DNA mismatch rep 99.7 5.2E-16 1.1E-20 180.6 19.6 257 27-373 17-298 (617)
12 PF13589 HATPase_c_3: Histidin 99.7 2E-16 4.4E-21 150.0 8.6 102 30-156 1-105 (137)
13 COG1389 DNA topoisomerase VI, 99.4 1.8E-12 4E-17 139.9 12.1 163 30-213 30-210 (538)
14 KOG1979 DNA mismatch repair pr 99.3 4.7E-11 1E-15 131.9 13.7 166 17-215 7-194 (694)
15 PRK04184 DNA topoisomerase VI 99.2 1.4E-10 3.1E-15 131.4 13.6 157 30-207 30-203 (535)
16 PRK14868 DNA topoisomerase VI 99.1 5.7E-10 1.2E-14 129.1 12.5 149 35-210 49-210 (795)
17 TIGR01052 top6b DNA topoisomer 99.1 1.2E-09 2.5E-14 122.8 13.5 150 35-207 31-194 (488)
18 PRK14867 DNA topoisomerase VI 99.0 6.5E-09 1.4E-13 120.2 14.8 155 35-213 39-205 (659)
19 PRK05559 DNA topoisomerase IV 98.9 6.2E-08 1.3E-12 113.4 18.7 152 33-206 38-200 (631)
20 smart00433 TOP2c Topoisomerase 98.7 2.1E-07 4.7E-12 108.3 17.7 146 36-206 5-164 (594)
21 TIGR01059 gyrB DNA gyrase, B s 98.7 5.7E-07 1.2E-11 105.9 19.6 150 34-213 32-197 (654)
22 TIGR01055 parE_Gneg DNA topois 98.7 5.5E-08 1.2E-12 113.5 9.8 158 32-214 30-202 (625)
23 KOG1978 DNA mismatch repair pr 98.6 6.2E-08 1.3E-12 110.1 8.0 151 24-206 12-180 (672)
24 PRK05644 gyrB DNA gyrase subun 98.5 3.4E-07 7.3E-12 107.3 9.3 148 34-206 39-198 (638)
25 PF02518 HATPase_c: Histidine 98.4 4.6E-07 9.9E-12 81.9 6.7 81 35-140 8-88 (111)
26 PRK14939 gyrB DNA gyrase subun 98.4 7.7E-07 1.7E-11 105.2 9.1 143 34-205 39-197 (756)
27 KOG1977 DNA mismatch repair pr 97.7 1.8E-05 3.9E-10 89.9 2.9 126 32-182 21-149 (1142)
28 TIGR01058 parE_Gpos DNA topois 97.4 0.00064 1.4E-08 79.9 10.4 159 34-215 36-206 (637)
29 cd00075 HATPase_c Histidine ki 97.4 0.00077 1.7E-08 57.7 7.9 85 35-144 3-91 (103)
30 PRK10755 sensor protein BasS/P 97.2 0.00059 1.3E-08 74.1 7.1 76 35-138 250-325 (356)
31 TIGR02916 PEP_his_kin putative 97.1 0.0009 2E-08 79.7 7.2 74 36-138 583-656 (679)
32 PRK10604 sensor protein RstB; 97.0 0.001 2.3E-08 74.7 6.9 78 35-138 322-399 (433)
33 smart00387 HATPase_c Histidine 96.9 0.0026 5.7E-08 55.2 6.5 81 35-140 8-88 (111)
34 PRK10549 signal transduction h 96.9 0.0023 4.9E-08 71.9 7.6 79 36-138 356-434 (466)
35 PLN03237 DNA topoisomerase 2; 96.8 0.0055 1.2E-07 76.8 11.0 162 34-217 79-260 (1465)
36 PRK11100 sensory histidine kin 96.8 0.0034 7.4E-08 70.3 8.4 79 35-138 371-449 (475)
37 TIGR02938 nifL_nitrog nitrogen 96.8 0.0032 7E-08 70.4 8.0 79 35-138 390-470 (494)
38 TIGR01386 cztS_silS_copS heavy 96.8 0.0029 6.2E-08 70.6 7.4 79 36-138 357-435 (457)
39 PRK11086 sensory histidine kin 96.7 0.0042 9.1E-08 71.1 8.3 76 35-138 436-511 (542)
40 PRK10815 sensor protein PhoQ; 96.7 0.0033 7.1E-08 72.1 7.2 97 36-185 382-478 (485)
41 PRK10364 sensor protein ZraS; 96.7 0.004 8.7E-08 70.2 7.7 73 36-138 352-424 (457)
42 PHA02569 39 DNA topoisomerase 96.6 0.0032 7E-08 73.6 6.8 158 35-215 48-222 (602)
43 COG0187 GyrB Type IIA topoisom 96.6 0.0055 1.2E-07 70.4 8.5 160 33-216 37-210 (635)
44 PTZ00108 DNA topoisomerase 2-l 96.5 0.011 2.3E-07 74.5 10.8 164 34-216 59-241 (1388)
45 PLN03128 DNA topoisomerase 2; 96.5 0.0073 1.6E-07 75.0 9.2 131 34-184 54-195 (1135)
46 PRK15347 two component system 96.5 0.0043 9.3E-08 76.1 7.2 73 36-137 517-589 (921)
47 PRK11466 hybrid sensory histid 96.5 0.0049 1.1E-07 75.7 7.4 82 36-146 565-650 (914)
48 PRK15053 dpiB sensor histidine 96.5 0.0075 1.6E-07 69.5 8.4 78 36-138 436-515 (545)
49 PRK11006 phoR phosphate regulo 96.5 0.0065 1.4E-07 68.1 7.7 80 35-138 320-399 (430)
50 PRK09470 cpxA two-component se 96.4 0.0074 1.6E-07 67.5 7.9 74 36-135 357-430 (461)
51 TIGR02956 TMAO_torS TMAO reduc 96.4 0.0079 1.7E-07 74.3 8.5 74 36-136 583-657 (968)
52 PRK09467 envZ osmolarity senso 96.4 0.007 1.5E-07 67.4 7.2 75 36-138 335-409 (435)
53 PRK09303 adaptive-response sen 96.3 0.0091 2E-07 66.1 7.6 76 35-138 275-353 (380)
54 COG3290 CitA Signal transducti 96.2 0.011 2.5E-07 67.0 7.9 76 35-136 430-505 (537)
55 PRK10337 sensor protein QseC; 96.1 0.012 2.5E-07 66.0 7.3 72 36-138 356-427 (449)
56 TIGR03785 marine_sort_HK prote 96.1 0.013 2.9E-07 70.2 7.9 80 35-138 600-679 (703)
57 PTZ00109 DNA gyrase subunit b; 95.9 0.013 2.8E-07 70.4 6.8 163 34-215 131-356 (903)
58 TIGR02966 phoR_proteo phosphat 95.9 0.017 3.7E-07 60.9 7.0 79 36-138 233-311 (333)
59 PRK13837 two-component VirA-li 95.9 0.016 3.5E-07 70.8 7.6 82 36-147 564-664 (828)
60 TIGR01925 spIIAB anti-sigma F 95.7 0.029 6.2E-07 52.6 6.7 47 34-91 41-87 (137)
61 PRK10618 phosphotransfer inter 95.6 0.028 6E-07 69.1 8.3 86 36-147 569-661 (894)
62 PRK09835 sensor kinase CusS; P 95.6 0.027 5.9E-07 63.5 7.6 52 35-100 378-429 (482)
63 PRK04069 serine-protein kinase 95.6 0.014 3E-07 56.9 4.3 88 34-144 44-131 (161)
64 PRK11360 sensory histidine kin 95.5 0.034 7.4E-07 63.8 8.1 50 36-99 504-554 (607)
65 PRK03660 anti-sigma F factor; 95.5 0.045 9.7E-07 51.8 7.6 48 34-92 41-88 (146)
66 PRK11091 aerobic respiration c 95.5 0.035 7.5E-07 67.2 8.4 90 35-148 401-495 (779)
67 COG4191 Signal transduction hi 95.3 0.025 5.5E-07 64.7 5.6 55 36-102 501-555 (603)
68 PRK10490 sensor protein KdpD; 95.1 0.048 1E-06 67.3 7.8 78 35-138 781-858 (895)
69 PRK10600 nitrate/nitrite senso 94.8 0.038 8.3E-07 64.4 5.7 43 36-93 473-515 (569)
70 PRK11107 hybrid sensory histid 94.8 0.066 1.4E-06 65.7 7.9 88 36-148 412-508 (919)
71 PRK09959 hybrid sensory histid 94.7 0.06 1.3E-06 68.3 7.6 76 35-137 831-911 (1197)
72 PRK10841 hybrid sensory kinase 94.6 0.077 1.7E-06 65.7 7.7 78 35-137 565-642 (924)
73 TIGR01924 rsbW_low_gc serine-p 94.5 0.058 1.3E-06 52.5 5.3 88 34-144 44-131 (159)
74 COG0642 BaeS Signal transducti 94.3 0.051 1.1E-06 56.4 4.6 49 35-98 231-279 (336)
75 PF13581 HATPase_c_2: Histidin 94.3 0.1 2.2E-06 48.0 6.1 81 34-142 33-113 (125)
76 KOG0019 Molecular chaperone (H 93.8 0.0024 5.1E-08 72.6 -6.9 242 391-645 357-604 (656)
77 PRK11073 glnL nitrogen regulat 93.4 0.18 3.8E-06 54.4 7.1 49 35-98 240-300 (348)
78 PRK10547 chemotaxis protein Ch 93.3 0.34 7.4E-06 57.7 9.6 53 37-97 390-448 (670)
79 COG3920 Signal transduction hi 92.7 0.16 3.5E-06 52.2 5.1 47 36-93 126-174 (221)
80 PRK13557 histidine kinase; Pro 92.4 0.3 6.5E-06 55.6 7.4 54 80-147 326-383 (540)
81 COG5000 NtrY Signal transducti 91.5 0.45 9.8E-06 54.9 7.2 55 37-100 605-661 (712)
82 KOG0787 Dehydrogenase kinase [ 91.5 0.68 1.5E-05 50.6 8.1 124 34-190 262-385 (414)
83 COG2172 RsbW Anti-sigma regula 89.6 1.1 2.3E-05 43.3 7.0 87 34-146 42-128 (146)
84 COG4251 Bacteriophytochrome (l 89.6 0.62 1.3E-05 54.0 6.2 69 68-148 657-731 (750)
85 PRK13560 hypothetical protein; 89.2 0.41 8.8E-06 57.5 4.7 45 36-93 715-762 (807)
86 PRK11644 sensory histidine kin 89.2 0.32 7E-06 56.0 3.7 43 36-93 414-456 (495)
87 COG0643 CheA Chemotaxis protei 88.8 1.4 3.1E-05 52.8 8.8 128 36-184 436-572 (716)
88 COG2205 KdpD Osmosensitive K+ 87.3 1.9 4.2E-05 51.6 8.4 56 36-105 779-834 (890)
89 COG4585 Signal transduction hi 86.2 0.61 1.3E-05 51.3 3.4 46 35-95 282-327 (365)
90 COG4192 Signal transduction hi 86.0 1.4 3E-05 49.5 5.9 55 36-106 568-625 (673)
91 COG3850 NarQ Signal transducti 85.1 1 2.2E-05 51.5 4.5 43 36-93 485-527 (574)
92 COG2972 Predicted signal trans 79.2 5.4 0.00012 45.5 7.6 55 30-96 348-404 (456)
93 PRK13559 hypothetical protein; 78.9 1.8 3.9E-05 46.9 3.6 44 36-92 271-318 (361)
94 PRK10935 nitrate/nitrite senso 76.1 2.8 6E-05 48.5 4.2 42 36-92 475-517 (565)
95 COG5002 VicK Signal transducti 75.8 4.2 9E-05 44.4 5.0 54 68-131 362-417 (459)
96 KOG1845 MORC family ATPases [C 69.1 4.2 9.1E-05 48.9 3.5 92 35-146 149-246 (775)
97 KOG0355 DNA topoisomerase type 68.9 8.3 0.00018 46.3 5.8 124 34-182 55-192 (842)
98 PF01119 DNA_mis_repair: DNA m 50.0 22 0.00048 32.6 4.1 89 295-391 9-114 (119)
99 KOG1845 MORC family ATPases [C 48.9 14 0.0003 44.6 3.1 52 81-147 2-54 (775)
100 cd03483 MutL_Trans_MLH1 MutL_T 47.6 40 0.00087 31.5 5.5 90 296-393 15-124 (127)
101 cd03482 MutL_Trans_MutL MutL_T 47.2 27 0.00058 32.5 4.2 73 294-374 12-96 (123)
102 PF06112 Herpes_capsid: Gammah 47.1 21 0.00045 34.3 3.4 37 610-646 17-62 (147)
103 PF12588 PSDC: Phophatidylseri 46.3 43 0.00092 32.2 5.4 58 615-675 2-64 (141)
104 COG2865 Predicted transcriptio 45.0 27 0.00058 40.0 4.5 83 33-137 271-357 (467)
105 COG4564 Signal transduction hi 39.9 36 0.00077 37.2 4.2 51 33-96 356-408 (459)
106 COG3851 UhpB Signal transducti 39.4 34 0.00073 37.8 4.0 25 67-91 430-454 (497)
107 cd03486 MutL_Trans_MLH3 MutL_T 38.5 50 0.0011 31.4 4.7 44 294-347 13-56 (141)
108 PRK14723 flhF flagellar biosyn 36.6 2.8E+02 0.0062 34.0 11.5 87 437-525 187-275 (767)
109 cd03485 MutL_Trans_hPMS_1_like 35.4 56 0.0012 30.6 4.4 91 296-391 15-127 (132)
110 cd03484 MutL_Trans_hPMS_2_like 34.9 53 0.0011 31.3 4.2 62 308-374 43-115 (142)
111 COG5381 Uncharacterized protei 31.1 1.9E+02 0.004 28.1 7.0 81 36-131 67-148 (184)
112 COG3852 NtrB Signal transducti 30.4 90 0.002 34.0 5.3 57 36-96 245-305 (363)
113 PF04122 CW_binding_2: Putativ 28.6 1.6E+02 0.0035 25.4 6.0 55 462-519 24-79 (92)
114 cd00782 MutL_Trans MutL_Trans: 28.6 73 0.0016 29.0 4.0 41 299-347 17-57 (122)
115 PF07429 Glyco_transf_56: 4-al 27.1 1.2E+02 0.0025 33.6 5.7 45 478-526 296-340 (360)
116 TIGR00032 argG argininosuccina 22.3 1.3E+02 0.0028 33.9 5.0 43 66-131 211-253 (394)
117 COG1578 Uncharacterized conser 22.1 7.5E+02 0.016 26.5 10.1 84 383-473 73-161 (285)
118 COG4813 ThuA Trehalose utiliza 22.0 84 0.0018 31.6 3.1 53 572-626 95-147 (261)
119 PF04025 DUF370: Domain of unk 22.0 1.2E+02 0.0026 25.8 3.6 36 34-88 23-58 (73)
120 COG3275 LytS Putative regulato 21.1 1.3E+02 0.0028 34.7 4.6 51 33-93 457-507 (557)
121 cd00329 TopoII_MutL_Trans MutL 21.0 1.7E+02 0.0036 25.3 4.7 31 309-346 26-56 (107)
122 PF06523 DUF1106: Protein of u 20.9 46 0.00099 28.1 0.9 24 333-356 58-81 (91)
123 PRK13820 argininosuccinate syn 20.8 1.4E+02 0.003 33.7 4.9 49 67-140 212-260 (394)
124 PRK04527 argininosuccinate syn 20.5 1.4E+02 0.003 33.8 4.8 48 67-139 215-262 (400)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-175 Score=1373.49 Aligned_cols=673 Identities=55% Similarity=0.924 Sum_probs=627.7
Q ss_pred cccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCC
Q 005321 8 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSG 87 (702)
Q Consensus 8 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 87 (702)
+.++|.||+++.|||.+|+|+||+|+++||||||+||+||++|+|+++|+|+..++...++.|.|..|+.++.|.|.|.|
T Consensus 71 kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtG 150 (785)
T KOG0020|consen 71 KAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTG 150 (785)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEeccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHHhcCCCC-----cccccccccceeeeeecceEEEEeecCCCceEEEEEccCceE
Q 005321 88 VGMTKADLVNNLGTIARSGTKEFMEALQAGADV-----SMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSF 162 (702)
Q Consensus 88 iGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~-----~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~ 162 (702)
+|||++||++||||||+||+++|++++++.++. .+||||||||||+|+|||+|.|+|+++++.+|.|+|++. .|
T Consensus 151 iGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESdan-~F 229 (785)
T KOG0020|consen 151 IGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESDAN-SF 229 (785)
T ss_pred CCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeeccCc-ce
Confidence 999999999999999999999999999864433 689999999999999999999999999999999999875 99
Q ss_pred EEEeCCCCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhh-hcccCCccc
Q 005321 163 TVTRDVSGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETK-EEEEGDVED 241 (702)
Q Consensus 163 ~i~~~~~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 241 (702)
+|..+|++++.+|||+|+|+|++++.+|+++++|+++|++||+||.|||++|..++++.+++-+++++.+ +..+.+...
T Consensus 230 svseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~~ed~ea~ 309 (785)
T KOG0020|consen 230 SVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDSTEDKEAA 309 (785)
T ss_pred eeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeecccccccccccccccchhhh
Confidence 9999999999999999999999999999999999999999999999999999999887777766554432 211222223
Q ss_pred cchhhhhhccccceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCC
Q 005321 242 VDEDKEKKGKKKKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRR 321 (702)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~ 321 (702)
+++++++++|+|++.+++|+|+++|+.+|||+|+|++|++++|..||+++++++.+|++|+||.+||.++|+++||+|+.
T Consensus 310 vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiLyVP~~ 389 (785)
T KOG0020|consen 310 VEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSILYVPKK 389 (785)
T ss_pred hhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEEEeCCC
Confidence 44444456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhh--hhcccceEEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHH
Q 005321 322 APFDLFDT--RKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMF 399 (702)
Q Consensus 322 ~p~~~~~~--~~~~~~i~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l 399 (702)
+|.++|+. .+.+.+|+||||||||+|++.+++|.||+||||||||+|||||||||+||++++|+.|+++|++|+|+||
T Consensus 390 ~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvrK~LDmi 469 (785)
T KOG0020|consen 390 APRDLFDEYGSKKSDNIKLYVRRVFITDEFHDMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVRKVLDMI 469 (785)
T ss_pred CchHHHHHhccccccceeEEEEEEEecchHHHHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999984 3456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCHHHHHH-HHHHHhHHhhccccCChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHh
Q 005321 400 NEIAENKEDYAK-FYDAFSKNIKLGIHEDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVE 478 (702)
Q Consensus 400 ~~la~d~~~y~~-f~~~~~~~lK~g~~eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~ 478 (702)
++++. ++|.. ||++||.+||+|+++|+.||..||+||||+||.++++.+||++|++|||+.|+.|||++|.|++++.
T Consensus 470 kKia~--e~~~d~FW~EFgtniKLGviED~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~IyymaGssr~e~E 547 (785)
T KOG0020|consen 470 KKIAG--EKYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMAGSSRKEVE 547 (785)
T ss_pred HHhhc--cccchHHHHHhccceeeeeeeCcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEecCCcHhhhc
Confidence 99975 56765 9999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHHHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCCCcchHHHHhHHHHHHhHHHHHHHHHH-HhCCc
Q 005321 479 NSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEEDDEEKKKREEKKKSFENLCKTIKE-ILGDN 557 (702)
Q Consensus 479 ~sp~~e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~~e~~~~~e~~~~~~~~L~~~~k~-~L~~~ 557 (702)
.|||+|.+.++||||||||+|+||+|||.|.+|+|++|++|+++|+++++.+..++..+..+++|+||+.|+|. +|.++
T Consensus 548 ~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~k~~alkd~ 627 (785)
T KOG0020|consen 548 KSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDKSEKTKESHEALEEEFEPLTKWLKDKALKDK 627 (785)
T ss_pred cCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCcccchhHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999988777777778888999999999998 57899
Q ss_pred eeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcc---CCcccccCCCCceEEECCCChHHHHHHhhhhcCCCchhH
Q 005321 558 VEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALR---DSSMSSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSV 634 (702)
Q Consensus 558 V~~V~vS~rL~dsPa~lv~~e~g~s~~meR~mkaq~~~---~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d~~~~~~ 634 (702)
|.+++||+||++|||++|++.+|||+||+|+|++|+.+ |+....|+.+|++|||||+||||+.|+.+...|+.++.+
T Consensus 628 ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~adeeD~t~ 707 (785)
T KOG0020|consen 628 IEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRIAADEEDETV 707 (785)
T ss_pred HHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHhhcCcccchH
Confidence 99999999999999999999999999999999999876 444444778999999999999999999999999888999
Q ss_pred HHHHHHHHHhHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCcccccCCCC
Q 005321 635 KDLVLLLYETALLTSGFSLDDPNTFAARIHRMLKLGLSIEEDETAGDDA 683 (702)
Q Consensus 635 ~~~~~lLyd~All~~G~~i~d~~~f~~ri~~ll~~~l~~~~~~~~~~~~ 683 (702)
++.|.+||++|+|.+||.+.|+..|+.||+++|+++|+|+.++.+++++
T Consensus 708 ~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is~Da~ve~e~ 756 (785)
T KOG0020|consen 708 KDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLNISPDAQVEEEI 756 (785)
T ss_pred HHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCCccccccccc
Confidence 9999999999999999999999999999999999999999887776654
No 2
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=8.3e-168 Score=1435.66 Aligned_cols=692 Identities=67% Similarity=1.072 Sum_probs=606.8
Q ss_pred cccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCC
Q 005321 10 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVG 89 (702)
Q Consensus 10 e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiG 89 (702)
|+|+||+|+++||+||+|+|||++++|||||||||+|||+++|+++++++.+....+.+.|+|..|.++++|+|.|||+|
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiG 82 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIG 82 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCC
Confidence 68999999999999999999999999999999999999999999999999877667778999999988899999999999
Q ss_pred CCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCCC
Q 005321 90 MTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVS 169 (702)
Q Consensus 90 Mt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~ 169 (702)
||++||.++|++||+||++.|+++++.+.+..+|||||||||||||||++|+|+||+.++.+|.|+++|++.|+|.+.+.
T Consensus 83 Mt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i~~~~~ 162 (701)
T PTZ00272 83 MTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPE 162 (701)
T ss_pred CCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEEEeCCC
Confidence 99999999999999999999998886555678999999999999999999999999876789999999999999988643
Q ss_pred CCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhh----hhcccCCccccchh
Q 005321 170 GEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEET----KEEEEGDVEDVDED 245 (702)
Q Consensus 170 ~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 245 (702)
....+||+|+|||+++..+|++.++|+++|++||.||+|||+++..++...++++++++.. ++++++.+++.+++
T Consensus 163 -~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (701)
T PTZ00272 163 -SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEG 241 (701)
T ss_pred -CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhccccccccccccccccccc
Confidence 3458999999999999999999999999999999999999999865544433333221110 01111122222222
Q ss_pred h-hhhccccceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCC
Q 005321 246 K-EKKGKKKKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPF 324 (702)
Q Consensus 246 ~-~~~~~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~ 324 (702)
+ +++++++++++++++|+++|+.+|||+|+++++++++|++||+.++++|.+||+|+||++||+++|+||||||+.+|+
T Consensus 242 ~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~llyiP~~~~~ 321 (701)
T PTZ00272 242 DEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPF 321 (701)
T ss_pred ccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEEEEEeCCCCcc
Confidence 1 234556777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhcccceEEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 005321 325 DLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAE 404 (702)
Q Consensus 325 ~~~~~~~~~~~i~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~ 404 (702)
++|+.....++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.++|+
T Consensus 322 ~~~~~~~~~~~i~LY~~rVfI~d~~~~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~ki~~~l~~la~ 401 (701)
T PTZ00272 322 DMFEPNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAE 401 (701)
T ss_pred chhhhhhccCceEEEEeeEEEecchhhhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99875445789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhHH
Q 005321 405 NKEDYAKFYDAFSKNIKLGIHEDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLE 484 (702)
Q Consensus 405 d~~~y~~f~~~~~~~lK~g~~eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e 484 (702)
++++|.+||++||.+||+|+++|..||++|++||||+||.++++++||+||++||+++|+.|||++|++++++++|||+|
T Consensus 402 ~~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~s~~~~~~sP~lE 481 (701)
T PTZ00272 402 NKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIE 481 (701)
T ss_pred CHHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCCCHHHHHhChHHH
Confidence 99999999999999999999999999999999999999986678999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCCCcchHHHHhHHHHHHhHHHHHHHHHHHhCCceeEEEEe
Q 005321 485 RLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEEDDEEKKKREEKKKSFENLCKTIKEILGDNVEKVVVS 564 (702)
Q Consensus 485 ~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~~e~~~~~e~~~~~~~~L~~~~k~~L~~~V~~V~vS 564 (702)
+|+++|||||||+||||||||++|++|+|++|+||++++++++..+++++..+..++++++|++|+|++|+++|.+|++|
T Consensus 482 ~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~~e~~~~~~~~~~~~~L~~~~k~~L~~kV~~VkvS 561 (701)
T PTZ00272 482 QARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVS 561 (701)
T ss_pred HHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccccchhhhhhhHHHHHHHHHHHHHHhCCcccEEEEe
Confidence 99999999999999999999999999999999999999998764333222223345589999999999999999999999
Q ss_pred ecCCCCCeEEEeCCCCccHHHHHHHHHHhccCCcccccCCCCceEEECCCChHHHHHHhhhhcCCCchhHHHHHHHHHHh
Q 005321 565 DRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDLVLLLYET 644 (702)
Q Consensus 565 ~rL~dsPa~lv~~e~g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d~~~~~~~~~~~lLyd~ 644 (702)
+||++||||||++++|+|++|+|||++|++++..+..++..+++|||||+||||++|+++...+++++.++++|+||||+
T Consensus 562 ~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~~~~~~~~~la~~LyD~ 641 (701)
T PTZ00272 562 ERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDT 641 (701)
T ss_pred ccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999997543333345568999999999999999988655555566799999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhcCCCCcccccCCCC-CCCCCCCCC-CcCcccccCC
Q 005321 645 ALLTSGFSLDDPNTFAARIHRMLKLGLSIEEDETAGDDA-EMPPLEDEG-NEESKMEEVD 702 (702)
Q Consensus 645 All~~G~~i~d~~~f~~ri~~ll~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~ 702 (702)
|+|++|+.++||+.|++|+|+||..+|+++.++....+. .+.++++++ ++++.++++|
T Consensus 642 AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 701 (701)
T PTZ00272 642 SLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEAAEAPVAETAPAEVTAGTSSMEQVD 701 (701)
T ss_pred HHHhCCCCccCHHHHHHHHHHHHHHhcCCCccccccccccccccCCccccccccccccCC
Confidence 999999999999999999999998899999765432111 122233332 2346777765
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=1.4e-166 Score=1423.17 Aligned_cols=668 Identities=44% Similarity=0.739 Sum_probs=594.4
Q ss_pred ccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005321 9 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGV 88 (702)
Q Consensus 9 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 88 (702)
.++++||+|+++||+||+++|||++++|||||||||+|||+|+||++++++.+.....++.|+|..|..+++|+|+|||+
T Consensus 65 ~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGI 144 (814)
T PTZ00130 65 IEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGI 144 (814)
T ss_pred cceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999988777788999999999999999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhc-CCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeC
Q 005321 89 GMTKADLVNNLGTIARSGTKEFMEALQA-GADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRD 167 (702)
Q Consensus 89 GMt~~dl~~~l~~Ia~S~~~~f~~~~~~-~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~ 167 (702)
|||++||.++|||||+||++.|+++++. +.+..+||||||||||||||||+|+|+||+.++.+|.|+|+|++.|+|.+.
T Consensus 145 GMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y~I~e~ 224 (814)
T PTZ00130 145 GMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKFTIYKD 224 (814)
T ss_pred CCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcEEEEEC
Confidence 9999999999999999999999998874 345789999999999999999999999998778899999999999999997
Q ss_pred CCCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhh-h--cccCCccccch
Q 005321 168 VSGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETK-E--EEEGDVEDVDE 244 (702)
Q Consensus 168 ~~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 244 (702)
+++...++||+|+|||+++..+|++.++|+++|++||.||+|||++++.++..+++++++..+.+ + ++++++++.+
T Consensus 225 ~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~- 303 (814)
T PTZ00130 225 PRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEMENDPNYDSVKVEETD- 303 (814)
T ss_pred CCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEccccccccccccccccccccccccccccccccc-
Confidence 55455689999999999999999999999999999999999999998655444444322211000 0 0111111111
Q ss_pred hhhhhccccceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCC
Q 005321 245 DKEKKGKKKKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPF 324 (702)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~ 324 (702)
+++++++++++.+++|+++|+.+|||+|++++||+++|++||+.++++|++||+|+||++||+++|+||||||+.+|+
T Consensus 304 --~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~~dPl~~iH~~~Eg~~~~~~LLYIP~~ap~ 381 (814)
T PTZ00130 304 --DPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHIHFFAEGEIEFKCLIYIPSRAPS 381 (814)
T ss_pred --cccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCccCCceeeeeccCCCeeEEEEEEecCCCcc
Confidence 123456777777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhcccceEEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 005321 325 DLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAE 404 (702)
Q Consensus 325 ~~~~~~~~~~~i~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~ 404 (702)
++|+....+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.++++
T Consensus 382 ~~~~~~~~~~~ikLYvrrVfI~d~~~dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~kkil~~L~~l~~ 461 (814)
T PTZ00130 382 INDHLFTKQNSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKILDTFRTLYK 461 (814)
T ss_pred chhhhhhccCceEEEEeeEEeecchhhhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88763235789999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ------------------------------CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcceecCCCCcccCHHH
Q 005321 405 ------------------------------NKEDYAKFYDAFSKNIKLGIHEDSQNRAKLADLLRFHSTKSGDEMTSLKD 454 (702)
Q Consensus 405 ------------------------------d~~~y~~f~~~~~~~lK~g~~eD~~~~~~l~~lLrf~ts~~~~~~~SL~e 454 (702)
||++|.+||++||.+||+||++|..|+++|++||||+||.+ ++++||++
T Consensus 462 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss~~-~~~~SL~e 540 (814)
T PTZ00130 462 EGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTMLH-PKSISLDT 540 (814)
T ss_pred hccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeCCC-CCccCHHH
Confidence 47899999999999999999999999999999999999986 46899999
Q ss_pred HHHhhccCCceEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCCCcchHHHH
Q 005321 455 YVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEEDDEEKK 534 (702)
Q Consensus 455 Yv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~~e~~~ 534 (702)
|++||+++|+.|||++|++++++++|||+|.|+++|+|||||++||||+++++|.+|+|++|++|++++++++..+++++
T Consensus 541 Yv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~~~~~~e~~ 620 (814)
T PTZ00130 541 YIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFELTEDEKK 620 (814)
T ss_pred HHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988764333333
Q ss_pred hHHHHHHhHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhccCCcccccCCCCceEEECCC
Q 005321 535 KREEKKKSFENLCKTIKEILGDNVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPD 614 (702)
Q Consensus 535 ~~e~~~~~~~~L~~~~k~~L~~~V~~V~vS~rL~dsPa~lv~~e~g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~ 614 (702)
..+...++|++|++|+|++|+++|.+|++|+||++||||||++++|+|++|+|||++|.+. +.+..++..+++|||||+
T Consensus 621 ~~~~~~~~~~~L~~~~k~~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~-~~~~~~~~~k~iLEINp~ 699 (814)
T PTZ00130 621 KEEKVKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVNN-SDQIKAMSGQKILEINPD 699 (814)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhcc-ccccccccCCeEEEECCC
Confidence 3333456799999999999999999999999999999999999999999999999998642 222235668999999999
Q ss_pred ChHHHHHHhhhhcCCCchhHHHHHHHHHHhHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCcccccCC
Q 005321 615 NGIMEELRKRAEVDKNDKSVKDLVLLLYETALLTSGFSLDDPNTFAARIHRMLKLGLSIEEDETAGD 681 (702)
Q Consensus 615 HPLIk~L~~~~~~d~~~~~~~~~~~lLyd~All~~G~~i~d~~~f~~ri~~ll~~~l~~~~~~~~~~ 681 (702)
||||++|+.+...+++++.++++|++|||+|+|++|+.++||+.|++||++||..+|++++.+....
T Consensus 700 Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~~~~~ 766 (814)
T PTZ00130 700 HPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNLKIDD 766 (814)
T ss_pred CHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence 9999999866544555567999999999999999999999999999999999999999997654433
No 4
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-164 Score=1333.03 Aligned_cols=619 Identities=55% Similarity=0.909 Sum_probs=596.7
Q ss_pred CcccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeC
Q 005321 7 GETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDS 86 (702)
Q Consensus 7 ~~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 86 (702)
+.+|+|.||+++++||+++++++||++++||||||+||+||++|+||.++++|... .+++.|+|.++++.++|+|.|+
T Consensus 32 ~~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~~nk~~~tlti~Dt 109 (656)
T KOG0019|consen 32 EPQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRIITNKDKRTITIQDT 109 (656)
T ss_pred ccccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEeccCCCcceEEEEec
Confidence 35589999999999999999999999999999999999999999999999999866 6789999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhccCchhHHHHHh-cCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEE
Q 005321 87 GVGMTKADLVNNLGTIARSGTKEFMEALQ-AGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVT 165 (702)
Q Consensus 87 GiGMt~~dl~~~l~~Ia~S~~~~f~~~~~-~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~ 165 (702)
|||||++||.++|||||+||++.|++.++ ++++.++|||||+||||+|+||++|+|+|+++++.++.|++.++++|++.
T Consensus 110 GIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~gs~~v~ 189 (656)
T KOG0019|consen 110 GIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRGSYEIA 189 (656)
T ss_pred CCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCCceEEe
Confidence 99999999999999999999999999999 67888999999999999999999999999998888999999999999999
Q ss_pred eCCCCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhhhcccCCccccchh
Q 005321 166 RDVSGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETKEEEEGDVEDVDED 245 (702)
Q Consensus 166 ~~~~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (702)
.. ....+||+|+||||.+..+|+++++|+++|++||.|+.|||++++
T Consensus 190 ~~---~~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~------------------------------ 236 (656)
T KOG0019|consen 190 EA---SGLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNG------------------------------ 236 (656)
T ss_pred ec---cCccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhh------------------------------
Confidence 85 348999999999999888999999999999999999999999986
Q ss_pred hhhhccccceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCCC
Q 005321 246 KEKKGKKKKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFD 325 (702)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~ 325 (702)
+.+|..+|||+|+|.+||.++|.+|||+++++|++|+++.||++||+++|+++||||.++||+
T Consensus 237 -----------------ek~N~tKpiW~rnp~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap~~ 299 (656)
T KOG0019|consen 237 -----------------ERVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAPNS 299 (656)
T ss_pred -----------------hhhhccCcccccCchhhhHHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCcch
Confidence 448999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcccceEEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhhC
Q 005321 326 LFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAEN 405 (702)
Q Consensus 326 ~~~~~~~~~~i~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~d 405 (702)
+|+.++.++|++||+|||||+|+|.+++|+||+||+|||||+|||||+|||+||+++++++||+.|++|+++++.++|+|
T Consensus 300 lF~~~kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e~a~d 379 (656)
T KOG0019|consen 300 MFDMRKKKNGIKLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQDLAKD 379 (656)
T ss_pred hhhhhhccCceEEEEEEEecCchhHHHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99988778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHhhccccCChhhHHH-HhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhHH
Q 005321 406 KEDYAKFYDAFSKNIKLGIHEDSQNRAK-LADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLE 484 (702)
Q Consensus 406 ~~~y~~f~~~~~~~lK~g~~eD~~~~~~-l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e 484 (702)
+++|++||++||.+||+|+++|.+|+.+ +++||||+||++.++++||++|++||+++|++|||++|+++.++++|||+|
T Consensus 380 ~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp~~E 459 (656)
T KOG0019|consen 380 AEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAESSPYYE 459 (656)
T ss_pred HHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccccccccHHHHHHhhcccccceEEeccchhhhhhcchHHH
Confidence 9999999999999999999999999999 999999999999888999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCCCcchHHHHhHHHHHHhHHHHHHHHHHHhCCceeEEEEe
Q 005321 485 RLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEEDDEEKKKREEKKKSFENLCKTIKEILGDNVEKVVVS 564 (702)
Q Consensus 485 ~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~~e~~~~~e~~~~~~~~L~~~~k~~L~~~V~~V~vS 564 (702)
.++++|+|||||++|+||+++++|.+|+|++|++|+++|+++++.++++.+.++...+|+.||.|||+.|+++|++|++|
T Consensus 460 ~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lck~mK~iL~~kVekV~vs 539 (656)
T KOG0019|consen 460 AFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELCKWMKEILGSKVEKVTVN 539 (656)
T ss_pred HHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhcCceEEEEec
Confidence 99999999999999999999999999999999999999999986666666777778899999999999999999999999
Q ss_pred ecCCCCCeEEEeCCCCccHHHHHHHHHHhccCCcccccCCCCceEEECCCChHHHHHHhhhhcCCCchhHHHHHHHHHHh
Q 005321 565 DRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDLVLLLYET 644 (702)
Q Consensus 565 ~rL~dsPa~lv~~e~g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d~~~~~~~~~~~lLyd~ 644 (702)
+||+++||||+++++||+++|+|+|+||+..+....++|.++++|||||+||||+.|.++...|+++ .+++++.|||++
T Consensus 540 ~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~dk~d-~~k~lv~llfet 618 (656)
T KOG0019|consen 540 NRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRESDKND-TAKDLVEQLYET 618 (656)
T ss_pred CcccCCceEEEecccccchhHHHHHhhhhccccChhhhccccceeeeCCCChHHHHHHHHHhcCcch-hHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888999999999999999999999999988876 999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhcCCCCcccc
Q 005321 645 ALLTSGFSLDDPNTFAARIHRMLKLGLSIEEDET 678 (702)
Q Consensus 645 All~~G~~i~d~~~f~~ri~~ll~~~l~~~~~~~ 678 (702)
|||++||.++||+.|+.|||+||..+|+++.+++
T Consensus 619 ALlssGfsl~dP~~~~~ri~~ml~~~l~~~e~~~ 652 (656)
T KOG0019|consen 619 ALISAGFSLDDPQTMVGRINRLLKSGLGRDEDEV 652 (656)
T ss_pred HHHHcCCCcCChHHHhhHHHHHHHHHhccCCCcc
Confidence 9999999999999999999999999999987643
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-160 Score=1328.60 Aligned_cols=615 Identities=52% Similarity=0.838 Sum_probs=572.6
Q ss_pred CcccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeC
Q 005321 7 GETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDS 86 (702)
Q Consensus 7 ~~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 86 (702)
...+++.||+|+++||++|+|||||||++|||||||||+|||+|+||.++++|......++++|+|.+|+++++|+|+||
T Consensus 2 ~~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DN 81 (623)
T COG0326 2 MEQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDN 81 (623)
T ss_pred CchhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeC
Confidence 34579999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhccCchhHHHHHhcC-CCCcccccccccceeeeeecceEEEEeecCC-CceEEEEEccCceEEE
Q 005321 87 GVGMTKADLVNNLGTIARSGTKEFMEALQAG-ADVSMIGQFGVGFYSAYLVAEKVIVTTKHND-DEQYVWESQAGGSFTV 164 (702)
Q Consensus 87 GiGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~-~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~-~~~~~w~~~~~~~~~i 164 (702)
|||||++|++.+|||||+|||++|++++.++ .+..+||||||||||||||||+|+|+||+.+ +.+++|+|+|+|.|+|
T Consensus 82 GIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv 161 (623)
T COG0326 82 GIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTV 161 (623)
T ss_pred CCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEE
Confidence 9999999999999999999999999998765 3688999999999999999999999999975 6788999999999999
Q ss_pred EeCCCCCCCC-CceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhhhcccCCccccc
Q 005321 165 TRDVSGEPLG-RGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETKEEEEGDVEDVD 243 (702)
Q Consensus 165 ~~~~~~~~~~-~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (702)
++.. ..+ +||+|+|||+++..+|++.|+|+++|++||.||++||++.++...++
T Consensus 162 ~~~~---~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~~---------------------- 216 (623)
T COG0326 162 EDID---KEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKDE---------------------- 216 (623)
T ss_pred eecc---CCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccccc----------------------
Confidence 9863 334 69999999999999999999999999999999999999965431100
Q ss_pred hhhhhhccccceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCC
Q 005321 244 EDKEKKGKKKKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAP 323 (702)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p 323 (702)
.+.+|+.+|..+|||+|+++++++++|.+||+.++++|.+||+|+|+++||.+++.+|||||..+|
T Consensus 217 --------------~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aP 282 (623)
T COG0326 217 --------------EVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAP 282 (623)
T ss_pred --------------cchhHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEEEEEEEccCCCC
Confidence 024589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhcccceEEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 005321 324 FDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIA 403 (702)
Q Consensus 324 ~~~~~~~~~~~~i~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la 403 (702)
|++|. +..++|++||||||||||+|.+|||+||+||+|||||+|||||||||+||+|++++.||+.|++|++++|.+||
T Consensus 283 fdl~~-~~~k~glkLYv~rVfI~Dd~~~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~La 361 (623)
T COG0326 283 FDLFR-RDRKRGLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKLA 361 (623)
T ss_pred ccccc-ccccCCcEEEEeeeEEeCChhhhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 45689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcceec-CCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcCh
Q 005321 404 E-NKEDYAKFYDAFSKNIKLGIHEDSQNRAKLADLLRFHST-KSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSP 481 (702)
Q Consensus 404 ~-d~~~y~~f~~~~~~~lK~g~~eD~~~~~~l~~lLrf~ts-~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp 481 (702)
+ ||++|.+||++||.+||+|+++|..|+++|++||||.|| .+.++++||+|||+||+++|+.|||++|++..++.+||
T Consensus 362 ~~~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~sP 441 (623)
T COG0326 362 KDDPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSP 441 (623)
T ss_pred hcCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEeccccHHHHhcCc
Confidence 8 799999999999999999999999999999999999994 44578999999999999999999999999999999999
Q ss_pred hHHHHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCCCcchHH-HHhHHHHHHhHHHHHHHHHHHhCCceeE
Q 005321 482 FLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEEDDEE-KKKREEKKKSFENLCKTIKEILGDNVEK 560 (702)
Q Consensus 482 ~~e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~~e~-~~~~e~~~~~~~~L~~~~k~~L~~~V~~ 560 (702)
++|.++++|||||+|+|+||+++|..+.+|+|++|++|+++++.+....++ +...++.+.+|++|++++|++|++.|++
T Consensus 442 ~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~L~~~vk~ 521 (623)
T COG0326 442 HLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKVKD 521 (623)
T ss_pred hHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccccccccchhhhhhhHHHHHHHHHHHHHHHHHhcCccce
Confidence 999999999999999999999999999999999999999999887665433 2334556678999999999999999999
Q ss_pred EEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhccCCcccccCCCCceEEECCCChHHHHHHhhhhcCCCchhHHHHHHH
Q 005321 561 VVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDLVLL 640 (702)
Q Consensus 561 V~vS~rL~dsPa~lv~~e~g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d~~~~~~~~~~~l 640 (702)
|++|+||+++|||++++..+++.+|+|+|++|++.. +..+++|||||+||||++|+... +.+.+.+++++
T Consensus 522 Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~~~~------~~~k~ilEiNp~h~lv~~L~~~~----d~~~~~~~~~l 591 (623)
T COG0326 522 VRLSHRLTDSPACLTTDGADLSTQMERLLKAQGQEV------PESKKILEINPNHPLVKKLASLE----DEASVADLVEL 591 (623)
T ss_pred eEeecccCCCcceeecCccchhHHHHHHHHhccccC------CccccceeeCcccHHHHHHHhcc----cHHHHHHHHHH
Confidence 999999999999999999999999999999987642 25889999999999999999886 34679999999
Q ss_pred HHHhHHHhCCCCCCCHHHHHHHHHHHHHhcC
Q 005321 641 LYETALLTSGFSLDDPNTFAARIHRMLKLGL 671 (702)
Q Consensus 641 Lyd~All~~G~~i~d~~~f~~ri~~ll~~~l 671 (702)
|||+|||++|++++||..|+.|+|++|.+++
T Consensus 592 lydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 592 LYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred HHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998765
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=4.6e-141 Score=1215.04 Aligned_cols=605 Identities=50% Similarity=0.824 Sum_probs=557.9
Q ss_pred ccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005321 9 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGV 88 (702)
Q Consensus 9 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 88 (702)
.|+++||+|+++||++|+++||+||.+|||||||||+|||+++|+.+++++....+..++.|+|.++.++++|+|+|||+
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~ 82 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGI 82 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCC
Confidence 47999999999999999999999999999999999999999999999998887766778899999998888999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcC--CCCcccccccccceeeeeecceEEEEeecCC--CceEEEEEccCceEEE
Q 005321 89 GMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAEKVIVTTKHND--DEQYVWESQAGGSFTV 164 (702)
Q Consensus 89 GMt~~dl~~~l~~Ia~S~~~~f~~~~~~~--~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~--~~~~~w~~~~~~~~~i 164 (702)
|||++|+..+|++||+||++.|+++++.. .+..+||+|||||+|+||+|++|+|.||+.+ ..++.|.+.|++.|++
T Consensus 83 GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~~i 162 (613)
T PRK05218 83 GMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEYTI 162 (613)
T ss_pred CCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCceeEE
Confidence 99999999999999999999999888532 3568999999999999999999999999854 5689999999999999
Q ss_pred EeCCCCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhhhcccCCccccch
Q 005321 165 TRDVSGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETKEEEEGDVEDVDE 244 (702)
Q Consensus 165 ~~~~~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (702)
.+. ...++||+|+|+|+++..+|++.++|+++|++||.|+++||++++.
T Consensus 163 ~~~---~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~---------------------------- 211 (613)
T PRK05218 163 EEI---EKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKE---------------------------- 211 (613)
T ss_pred eEC---CCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEecc----------------------------
Confidence 985 3348999999999999999999999999999999999999999541
Q ss_pred hhhhhccccceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCC
Q 005321 245 DKEKKGKKKKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPF 324 (702)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~ 324 (702)
+|+++|+++|+|+++++++++++|..||+.++++|.+||+++|++++|++.|+|+||+|..+|+
T Consensus 212 ----------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~~~ 275 (613)
T PRK05218 212 ----------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPF 275 (613)
T ss_pred ----------------cceeecCCccceecCCccccHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCCcc
Confidence 2689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhcccceEEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 005321 325 DLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAE 404 (702)
Q Consensus 325 ~~~~~~~~~~~i~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~ 404 (702)
++|+. ..+++++||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.++|+
T Consensus 276 ~~~~~-~~~~~~~lyvn~v~I~d~~~~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~la~ 354 (613)
T PRK05218 276 DLFNR-DRKGGLKLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKLAK 354 (613)
T ss_pred chhhh-cccccEEEEECcEEeeCchhhhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98863 35789999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhH
Q 005321 405 -NKEDYAKFYDAFSKNIKLGIHEDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFL 483 (702)
Q Consensus 405 -d~~~y~~f~~~~~~~lK~g~~eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~ 483 (702)
|+++|++||++||.+||+||++|.+++++|++||||+||+ .++++||+||++||+++|+.|||++++|++++.+|||+
T Consensus 355 ~d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~-~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~~ 433 (613)
T PRK05218 355 NDREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH-EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSPHL 433 (613)
T ss_pred hCHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC-CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhChHH
Confidence 9999999999999999999999999999999999999996 35699999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCCCcc-hHHHHhHHHHHHhHHHHHHHHHHHhCCceeEEE
Q 005321 484 ERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEED-DEEKKKREEKKKSFENLCKTIKEILGDNVEKVV 562 (702)
Q Consensus 484 e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~-~e~~~~~e~~~~~~~~L~~~~k~~L~~~V~~V~ 562 (702)
|.++++|+|||++++|+|++|+++|.+|+|++|++|+++++++++. ++++...+..+++|++|++|+++.|+++|++|+
T Consensus 434 e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~v~~V~ 513 (613)
T PRK05218 434 ELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDVR 513 (613)
T ss_pred HHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccccchhhhhhhhhHHHHHHHHHHHHHHhcCcceEEE
Confidence 9999999999999999999999999999999999999999987651 112222233455899999999999999999999
Q ss_pred EeecCCCCCeEEEeCCCCccHHHHHHHHHHhccCCcccccCCCCceEEECCCChHHHHHHhhhhcCCCchhHHHHHHHHH
Q 005321 563 VSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDLVLLLY 642 (702)
Q Consensus 563 vS~rL~dsPa~lv~~e~g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d~~~~~~~~~~~lLy 642 (702)
+|+||+++|||++++++|++++|+|+|++|++ +.+..+++|||||+||||++|+... + ++.++.++++||
T Consensus 514 ~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~~------~~~~~~~~LeiNp~hplI~~L~~~~--d--~~~~~~~~~~Ly 583 (613)
T PRK05218 514 LSHRLTDSPACLVADEGDMSTQMEKLLKAAGQ------EVPESKPILEINPNHPLVKKLADEA--D--EAKFKDLAELLY 583 (613)
T ss_pred EeccCCCCCeEEEeCccchHHHHHHHHHhhhh------cccccceEEEEcCCCHHHHHHHhcc--C--hHHHHHHHHHHH
Confidence 99999999999999999999999999998752 1334789999999999999998753 2 234999999999
Q ss_pred HhHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Q 005321 643 ETALLTSGFSLDDPNTFAARIHRMLKLGLS 672 (702)
Q Consensus 643 d~All~~G~~i~d~~~f~~ri~~ll~~~l~ 672 (702)
|+|+|++|+.++||+.|++|+++||.++++
T Consensus 584 d~AlL~~G~~~~d~~~~~~r~~~ll~~~~~ 613 (613)
T PRK05218 584 DQALLAEGGSLEDPAAFVKRLNELLLKLLA 613 (613)
T ss_pred HHHHHhCCCCccCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999987653
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=1.8e-129 Score=1109.03 Aligned_cols=573 Identities=23% Similarity=0.326 Sum_probs=504.9
Q ss_pred ccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEE-cCCCCEEEEEeCCCC
Q 005321 11 TFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVP-DKANKTLSIIDSGVG 89 (702)
Q Consensus 11 ~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DnGiG 89 (702)
.++||+|+++||++|+++||++|.+|||||||||+|||+++++.. + ..+..|+|.+ +.++++|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~---~-----~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD---P-----TAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC---C-----CCCceEEEEEccCCCcEEEEEeCCCC
Confidence 478999999999999999999999999999999999999987642 1 2346788877 777899999999999
Q ss_pred CCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecC-CCceEEEEEccCceEEEEeCC
Q 005321 90 MTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHN-DDEQYVWESQAGGSFTVTRDV 168 (702)
Q Consensus 90 Mt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~-~~~~~~w~~~~~~~~~i~~~~ 168 (702)
||.+++.++|++||+||++.|. +. ..+..+||+|||||||+||||++|+|.|++. ++.++.|++.+++.|+++..+
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~-~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~ 150 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LG-FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLE 150 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hc-ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCC
Confidence 9999999999999999998753 21 2346799999999999999999999999986 577999999999999999742
Q ss_pred CCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhhhcccCCccccchhhhh
Q 005321 169 SGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETKEEEEGDVEDVDEDKEK 248 (702)
Q Consensus 169 ~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (702)
.....+||+|+|+++++..+|++.++|++++++||.|++|||+++++
T Consensus 151 -~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~-------------------------------- 197 (601)
T PRK14083 151 -TERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE-------------------------------- 197 (601)
T ss_pred -CCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc--------------------------------
Confidence 24568999999999999999999999999999999999999999541
Q ss_pred hccccceeeeeeeeEEeecCCCccccCCCCCC--HHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEE-eeCCCCCC
Q 005321 249 KGKKKKVKEVTHEWQLINKQKPIWLRKPEEVT--KEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILF-VPRRAPFD 325 (702)
Q Consensus 249 ~~~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~--~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~-iP~~~p~~ 325 (702)
.+++|+.+|||+|+++++| +++|.+||+.+++ .+||+|+|+++||++. +|+|| ||..+|++
T Consensus 198 -------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~--~~Pl~~ih~~~e~~~~-~~~Ly~iP~~~~~~ 261 (601)
T PRK14083 198 -------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG--FTPLDVIPLDVPSGGL-EGVAYVLPYAVSPA 261 (601)
T ss_pred -------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC--CCchheeeecccchhh-eEEEEecCCCCCcc
Confidence 1689999999999999998 9999999999997 7999999999999765 77887 69999875
Q ss_pred chhhhhcccceEEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhh-
Q 005321 326 LFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAE- 404 (702)
Q Consensus 326 ~~~~~~~~~~i~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~- 404 (702)
. +++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|+++++||+.|++|++++|.++|+
T Consensus 262 ~------~~~v~LY~~rVfI~d~~~~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~la~~ 335 (601)
T PRK14083 262 A------RRKHRVYLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKWLIGLATT 335 (601)
T ss_pred c------cCceEEEeeeeEeecchhhhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 579999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCC-CHHHHhcChhH
Q 005321 405 NKEDYAKFYDAFSKNIKLGIHEDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGE-SRKAVENSPFL 483 (702)
Q Consensus 405 d~~~y~~f~~~~~~~lK~g~~eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~-~~~~~~~sp~~ 483 (702)
||++|++||++||.+||+|+++|.+|+++|++||||+||.+ .+||+||++|| +.|||+++. ++++++
T Consensus 336 d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~~---~~sL~eY~~r~----~~IyY~~~~~~~~~~~----- 403 (601)
T PRK14083 336 DPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTDG---RMTLAEIRRRH----GVIRYTSSVDEFRQLA----- 403 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCCC---CcCHHHHHHhC----CeEEEEcCHHHHHHHH-----
Confidence 99999999999999999999999999999999999999985 69999999995 589999996 777775
Q ss_pred HHHHHcCCEEEEeCCCchHHHHHHhhh-ccCcceEeecccCCC--CCcchHHHHhHHHHHHhHHHHHHHHHHHhCCceeE
Q 005321 484 ERLKKKGYEVLFMVDAIDEYAVGQLKE-YDGKKLVSATKEGLK--LEEDDEEKKKREEKKKSFENLCKTIKEILGDNVEK 560 (702)
Q Consensus 484 e~~~~~g~eVL~l~d~iDE~~l~~l~~-~~g~~~~~v~~~~l~--l~~~~e~~~~~e~~~~~~~~L~~~~k~~L~~~V~~ 560 (702)
+.|+++|+|||+|++||||+++++|.+ |+|++|++|+++++. +...+ ...++++++|++|++++|++++.+
T Consensus 404 ~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~L~~~~~~ 477 (601)
T PRK14083 404 PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDRLEPLT------PEEELALRPFLAEAREVLAPFGCD 477 (601)
T ss_pred HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhhccccc------hhhHHHHHHHHHHHHHHhCccceE
Confidence 689999999999999999999999998 999999999998773 33222 123457999999999999997666
Q ss_pred E-EEeecCCCCCeEEEeCCCCccHHHHHHHHHHh-ccCCcc--------cccCCCCceEEECCCChHHHHHHhhhhcCCC
Q 005321 561 V-VVSDRIVDSPCCLVTGEYGWSANMERIMKAQA-LRDSSM--------SSYMSSKKTMEINPDNGIMEELRKRAEVDKN 630 (702)
Q Consensus 561 V-~vS~rL~dsPa~lv~~e~g~s~~meR~mkaq~-~~~~~~--------~~~~~~k~~LEINp~HPLIk~L~~~~~~d~~ 630 (702)
| ++|+||+++|||++++++ .+|+|+|+++. ++++.+ ......+++|||||+||||++|+.. . +
T Consensus 478 v~~~s~rl~~~Pa~~v~~e~---~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~~--~--d 550 (601)
T PRK14083 478 VVIRHFEPADLPALYLHDRA---AQHSREREEAVEEADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLATL--G--D 550 (601)
T ss_pred EEEEcCCCCCCCEEEEeCch---hHHHHHHHhhhhhcccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHhc--c--C
Confidence 6 677899999999999885 46666665331 111111 1233578999999999999999875 2 3
Q ss_pred chhHHHHHHHHHHhHHHhCCCCCC--CHHHHHHHHHHHHHhcCCCC
Q 005321 631 DKSVKDLVLLLYETALLTSGFSLD--DPNTFAARIHRMLKLGLSIE 674 (702)
Q Consensus 631 ~~~~~~~~~lLyd~All~~G~~i~--d~~~f~~ri~~ll~~~l~~~ 674 (702)
.+.+++++++|||+|+|++|++++ +|+.|+.++++||..+|+-+
T Consensus 551 ~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~~ 596 (601)
T PRK14083 551 PKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELALDAD 596 (601)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 467999999999999999999888 99999999999999888654
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=3e-130 Score=1104.26 Aligned_cols=492 Identities=61% Similarity=0.979 Sum_probs=424.8
Q ss_pred hhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhh---h-cc-----cCCccccchhhh---hhcccccee
Q 005321 189 EYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETK---E-EE-----EGDVEDVDEDKE---KKGKKKKVK 256 (702)
Q Consensus 189 e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~---~-~~-----~~~~~~~~~~~~---~~~~~~~~~ 256 (702)
+|+++++|+++|++||.|++|||+++..++.++++++++++.++ + ++ +++.++.+++++ +++++++++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~~ 80 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKEEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKVK 80 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT-TT--------SSEEEE----S-TTEEEEECC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 59999999999999999999999999988877777777654421 1 11 111222222221 356778888
Q ss_pred eeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccce
Q 005321 257 EVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNI 336 (702)
Q Consensus 257 ~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i 336 (702)
+++++|+++|+++|||+|+|++||+++|.+||+.++++|++||+|+||++||+++|+||||||+.+|+++|......++|
T Consensus 81 ~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~~~~~~i 160 (531)
T PF00183_consen 81 ETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDYDDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFENDKKKNGI 160 (531)
T ss_dssp EEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSSTT--SE
T ss_pred cceeecccccccCcccccchhccchHHHHHHHHHhhhcccCchhheeccccccceeeEEEEeCCCCchhhhhhhhccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998755557899
Q ss_pred EEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 005321 337 KLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYDAF 416 (702)
Q Consensus 337 ~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~d~~~y~~f~~~~ 416 (702)
+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|++||+|+++|.+||++|
T Consensus 161 kLY~rrVfI~d~~~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~~d~e~y~~f~~~~ 240 (531)
T PF00183_consen 161 KLYVRRVFITDNFEELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLAKDREKYEKFWKEF 240 (531)
T ss_dssp EEEETTEEEESSCGGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred eeeeecccccchhhcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhccccCChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhHHHHHHcCCEEEEe
Q 005321 417 SKNIKLGIHEDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFM 496 (702)
Q Consensus 417 ~~~lK~g~~eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e~~~~~g~eVL~l 496 (702)
|.+||+||++|..||++|++||||+||+++++++||++|++||+++|+.|||++|++++++.+|||+|+|+++|||||||
T Consensus 241 g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~EVL~l 320 (531)
T PF00183_consen 241 GKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYEVLFL 320 (531)
T ss_dssp HHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--EEEE
T ss_pred hHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhhCceEEEe
Confidence 99999999999999999999999999998788999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhhccCcceEeecccCCCCCcchHHHHhHHHHHHhHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEe
Q 005321 497 VDAIDEYAVGQLKEYDGKKLVSATKEGLKLEEDDEEKKKREEKKKSFENLCKTIKEILGDNVEKVVVSDRIVDSPCCLVT 576 (702)
Q Consensus 497 ~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~~e~~~~~e~~~~~~~~L~~~~k~~L~~~V~~V~vS~rL~dsPa~lv~ 576 (702)
++|||++||++|++|+|++|++|+++++++++.++++...+..+++|++|++|+|++|+++|++|++|.||++|||||++
T Consensus 321 ~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~~~k~~L~~kV~~V~vS~RL~~sPa~lv~ 400 (531)
T PF00183_consen 321 TDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTEWLKELLGDKVEKVKVSNRLVDSPAVLVS 400 (531)
T ss_dssp -SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEE-SSSSSSSEEEEE
T ss_pred CCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHhhhhhhhheecccccccCCcceeec
Confidence 99999999999999999999999999999987766666667778899999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHhccCCcccccCCCCceEEECCCChHHHHHHhhhhcCCCchhHHHHHHHHHHhHHHhCCCCCCCH
Q 005321 577 GEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDLVLLLYETALLTSGFSLDDP 656 (702)
Q Consensus 577 ~e~g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d~~~~~~~~~~~lLyd~All~~G~~i~d~ 656 (702)
+++|+|++|+|||+||+.+++.+..++.++++|||||+||||++|+.+...+++++.++++|++|||+|+|++||+++||
T Consensus 401 ~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~l~dp 480 (531)
T PF00183_consen 401 SEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEKDEDDELAKDLAEQLYDTALLASGFELEDP 480 (531)
T ss_dssp -SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS-SSH
T ss_pred ccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCCcccH
Confidence 99999999999999998876666667788999999999999999999988777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcccccC
Q 005321 657 NTFAARIHRMLKLGLSIEEDETAG 680 (702)
Q Consensus 657 ~~f~~ri~~ll~~~l~~~~~~~~~ 680 (702)
+.|++|+|+||.++|+++.++...
T Consensus 481 ~~F~~Ri~~lL~~~l~~~~~~~~~ 504 (531)
T PF00183_consen 481 AAFAKRINKLLEKSLGVDPDAEVE 504 (531)
T ss_dssp HHHHHHHHHHHHHTTC--STTTTT
T ss_pred HHHHHHHHHHHHHhcCCCcCCccc
Confidence 999999999999999998764443
No 9
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.83 E-value=4.2e-20 Score=214.03 Aligned_cols=287 Identities=21% Similarity=0.250 Sum_probs=188.9
Q ss_pred HHHHHHHHHHhcCCC-----chhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCC
Q 005321 18 INQLLSLIINTFYSN-----KEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN-KTLSIIDSGVGMT 91 (702)
Q Consensus 18 ~~~ll~ll~~~LYs~-----~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt 91 (702)
|+.|-+.++|.|.++ |..+|||||.||+||++ .+|+|.++.+| +.|.|+|||+||+
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGA------------------t~I~I~ve~gG~~~I~V~DNG~Gi~ 65 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGA------------------TRIDIEVEGGGLKLIRVRDNGSGID 65 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCC------------------CEEEEEEccCCccEEEEEECCCCCC
Confidence 566777788888876 89999999999999997 58888888777 4599999999999
Q ss_pred HHHHHHHHhhhhccCchhHHHHHhcCCCCccc---ccccccceeeeeecceEEEEeecC-CCceEEEEEccCceE-EEEe
Q 005321 92 KADLVNNLGTIARSGTKEFMEALQAGADVSMI---GQFGVGFYSAYLVAEKVIVTTKHN-DDEQYVWESQAGGSF-TVTR 166 (702)
Q Consensus 92 ~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~i---G~fGIGf~S~F~vad~v~V~Sr~~-~~~~~~w~~~~~~~~-~i~~ 166 (702)
++||...+.++|+|- +....|...| |..|=.+.| ..-..+++|+||.. +..++.|...|++.- ++.+
T Consensus 66 ~~Dl~la~~rHaTSK-------I~~~~DL~~I~TlGFRGEAL~S-IasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p 137 (638)
T COG0323 66 KEDLPLALLRHATSK-------IASLEDLFRIRTLGFRGEALAS-IASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKP 137 (638)
T ss_pred HHHHHHHHhhhcccc-------CCchhHHHHhhccCccHHHHHH-HHhhheeEEEeecCCcCceEEEEecCCcccccccC
Confidence 999999999999983 4333344344 444444444 44446799999965 466788887776544 4444
Q ss_pred CCCCCCCCCceEEEE------------EeccchhhhhcHHHHHHHHHHhcccCccc-eEEecccccccccCchhhhhhhh
Q 005321 167 DVSGEPLGRGTKITL------------FLKEDQCEYLEERRIKDLVKKHSEFISYP-IYLWTEKTTEKEVSDDEEEETKE 233 (702)
Q Consensus 167 ~~~~~~~~~GT~I~L------------~lk~~~~e~~~~~~i~~ii~~ys~fl~~P-I~~~~~~~~~~~~~~~~~~~~~~ 233 (702)
...+.||+|+| ++|...+|| .+|.++|++|+. .+| |.|.
T Consensus 138 ----~a~~~GTtVeV~dLF~NtPaRrKflks~~~E~---~~i~~vv~r~AL--ahp~I~F~------------------- 189 (638)
T COG0323 138 ----AAHPVGTTVEVRDLFYNTPARRKFLKSEKTEF---GHITELINRYAL--AHPDISFS------------------- 189 (638)
T ss_pred ----CCCCCCCEEEehHhhccChHHHHhhcccHHHH---HHHHHHHHHHHh--cCCCeEEE-------------------
Confidence 23456999999 456666666 489999999998 665 6652
Q ss_pred cccCCccccchhhhhhccccceeeeeeeeEEeecCC---CccccCCCCCCHHHHHHHHHHhhcCcccccceeeeecccee
Q 005321 234 EEEGDVEDVDEDKEKKGKKKKVKEVTHEWQLINKQK---PIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQL 310 (702)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~---~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~ 310 (702)
+.++++ .+-..+... ...+ +-...++..+...+..++...++ +
T Consensus 190 ------------------------------l~~~gk~~~~~~~~~~~~-~~~~--ri~~i~G~~~~~~~l~i~~~~~~-~ 235 (638)
T COG0323 190 ------------------------------LSHNGKLRIELLKLPGTG-DLEE--RIAAVYGTEFLKNALPIENEHED-L 235 (638)
T ss_pred ------------------------------EEECCceeeEEEecCCCC-cHHH--HHHHHhCHHHHHhhcccccCCCc-e
Confidence 222222 111111110 1111 22222233333444446655455 7
Q ss_pred EEEEEEEeeCCCCCCchhhhhcccceEEEecccccccc---------cccccccc---ccceeeeecCCCCCCccc---h
Q 005321 311 EFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMDN---------CEELIPEY---LGFVKGVVDSDDLPLNIS---R 375 (702)
Q Consensus 311 ~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d~---------~~~llP~~---l~Fv~gvVDs~dLplnvS---R 375 (702)
++.|++..|... +.++..+.+|||+++|.|. +.++||.- +.++.=-+|...+=.||. +
T Consensus 236 ~l~G~v~~P~~~-------r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~l~p~~vDVNVHP~K~ 308 (638)
T COG0323 236 RLSGYVSLPEFT-------RASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKK 308 (638)
T ss_pred EEEEEecccccc-------cCCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEeeChhhcccccCCCcc
Confidence 888988888532 4567899999999999997 45677763 455555678877888885 2
Q ss_pred hh-hccchHHHHHHHHHHHHHHHHHHHH
Q 005321 376 ET-LQQNKILKVIRKNLVKKCIEMFNEI 402 (702)
Q Consensus 376 E~-lq~~~~l~~i~~~l~~k~l~~l~~l 402 (702)
|- |.+ .+.|.+.|.+.+.+.|.+.
T Consensus 309 EVrf~~---~~~i~~~I~~~I~~~L~~~ 333 (638)
T COG0323 309 EVRFSD---ERLVHDLIYEAIKEALAQQ 333 (638)
T ss_pred eEEecC---HHHHHHHHHHHHHHHHHhc
Confidence 21 111 2445555555555556553
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=3.4e-16 Score=168.20 Aligned_cols=153 Identities=24% Similarity=0.280 Sum_probs=103.4
Q ss_pred HhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCC-EEEEEeCCCCCCHHHHHHHHhhhhcc
Q 005321 27 NTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANK-TLSIIDSGVGMTKADLVNNLGTIARS 105 (702)
Q Consensus 27 ~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~-~l~I~DnGiGMt~~dl~~~l~~Ia~S 105 (702)
.....++..+|+|||+||+||.+ ..|.|.+..++. .|+|.|||.||+.+++...+....+|
T Consensus 17 ~~~i~~~~~~l~eLi~Na~dA~a------------------~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 17 GEVIERPASVVKELVENSLDAGA------------------TRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred cCchhhHHHHHHHHHHHHHHCCC------------------CEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 45567889999999999999975 245555544443 59999999999999999766555544
Q ss_pred CchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeec--CCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEE-
Q 005321 106 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKH--NDDEQYVWESQAGGSFTVTRDVSGEPLGRGTKITLF- 182 (702)
Q Consensus 106 ~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~--~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~- 182 (702)
-...+. .+ ......|.+|.|++|...++ +++|+|+. .++.++.|...|+ .+... .....++||+|++.
T Consensus 79 k~~~~~-~~---~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~---~~~~~-~~~~~~~GTtV~v~~ 149 (312)
T TIGR00585 79 KIQSFE-DL---ERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG---MIEEI-KPAPRPVGTTVEVRD 149 (312)
T ss_pred CCCChh-Hh---hcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC---cCccc-ccccCCCccEEEEch
Confidence 322211 11 23456899999999998888 89999997 3556778874433 22211 11345799999995
Q ss_pred ec---cchhhhh-----cHHHHHHHHHHhccc
Q 005321 183 LK---EDQCEYL-----EERRIKDLVKKHSEF 206 (702)
Q Consensus 183 lk---~~~~e~~-----~~~~i~~ii~~ys~f 206 (702)
|- +..+.++ +...+++++.+|+..
T Consensus 150 lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~ 181 (312)
T TIGR00585 150 LFYNLPVRRKFLKSPKKEFRKILDLLNRYALI 181 (312)
T ss_pred hhccCchhhhhccCcHHHHHHHHHHHHHHhhc
Confidence 21 1112222 235789999999973
No 11
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.69 E-value=5.2e-16 Score=180.59 Aligned_cols=257 Identities=20% Similarity=0.291 Sum_probs=159.3
Q ss_pred HhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 005321 27 NTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN-KTLSIIDSGVGMTKADLVNNLGTIARS 105 (702)
Q Consensus 27 ~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~l~~Ia~S 105 (702)
.....+|..+|+|||+||+||++ ..|.|.+..++ ..|+|.|||.||+.+++...+..+++|
T Consensus 17 gevI~~~~svvkElveNsiDAga------------------t~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~ts 78 (617)
T PRK00095 17 GEVVERPASVVKELVENALDAGA------------------TRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATS 78 (617)
T ss_pred cCcccCHHHHHHHHHHHHHhCCC------------------CEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCC
Confidence 33445689999999999999986 35666664444 579999999999999999888877766
Q ss_pred CchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCC-CceEEEEEccCceEEEEeCCCCCCCCCceEEEEE-e
Q 005321 106 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHND-DEQYVWESQAGGSFTVTRDVSGEPLGRGTKITLF-L 183 (702)
Q Consensus 106 ~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~-~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~-l 183 (702)
.-..+ +.+ ......|..|.|+.|.-.++ +++|+|+..+ +.+|.+...++....+.+ ....+||+|++. |
T Consensus 79 Ki~~~-~dl---~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~----~~~~~GT~V~v~~L 149 (617)
T PRK00095 79 KIASL-DDL---EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKP----AAHPVGTTIEVRDL 149 (617)
T ss_pred CCCCh-hHh---hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceec----ccCCCCCEEEechh
Confidence 32211 111 12345799999988777775 8999999853 456766655543222222 234799999994 2
Q ss_pred ---ccchhhhh-----cHHHHHHHHHHhcccCccc-eEEecccccccccCchhhhhhhhcccCCccccchhhhhhccccc
Q 005321 184 ---KEDQCEYL-----EERRIKDLVKKHSEFISYP-IYLWTEKTTEKEVSDDEEEETKEEEEGDVEDVDEDKEKKGKKKK 254 (702)
Q Consensus 184 ---k~~~~e~~-----~~~~i~~ii~~ys~fl~~P-I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (702)
-+.++.|+ +...|.+++++|+. .+| |.|.
T Consensus 150 F~n~P~Rrkflk~~~~e~~~i~~~v~~~Al--~~p~i~f~---------------------------------------- 187 (617)
T PRK00095 150 FFNTPARRKFLKSEKTELGHIDDVVNRLAL--AHPDVAFT---------------------------------------- 187 (617)
T ss_pred hccCcHHHHhccCcHHHHHHHHHHHHHHhh--cCCCcEEE----------------------------------------
Confidence 12222232 33478999999998 555 5552
Q ss_pred eeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhc-CcccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcc
Q 005321 255 VKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTN-DWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKL 333 (702)
Q Consensus 255 ~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~-~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~ 333 (702)
..++++.+|.-++. ..+.+....+++ .....+..+.... +.+.+.|++..|... +..+
T Consensus 188 ---------l~~~~~~~~~~~~~----~~~~~~i~~i~g~~~~~~l~~~~~~~-~~~~i~g~is~p~~~-------~~~~ 246 (617)
T PRK00095 188 ---------LTHNGKLVLQTRGA----GQLLQRLAAILGREFAENALPIDAEH-GDLRLSGYVGLPTLS-------RANR 246 (617)
T ss_pred ---------EEECCEEEEEeCCC----CCHHHHHHHHhCHHhHhheEEEeccC-CCEEEEEEEeCcccc-------cCCC
Confidence 11222233443322 122333333332 2323333333332 348888988777533 2235
Q ss_pred cceEEEecccccccc---------ccccccc--c-ccceeeeecCCCCCCcc
Q 005321 334 NNIKLYVRRVFIMDN---------CEELIPE--Y-LGFVKGVVDSDDLPLNI 373 (702)
Q Consensus 334 ~~i~lYv~~v~I~d~---------~~~llP~--~-l~Fv~gvVDs~dLplnv 373 (702)
..+.+|||+++|.+. ...++|. | ..|+.--+|...+-.||
T Consensus 247 ~~~~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~~P~~~l~i~~~~~~~DvNv 298 (617)
T PRK00095 247 DYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNV 298 (617)
T ss_pred cceEEEECCcEecCHHHHHHHHHHHHHhccCCCCcEEEEEEEeChHhccccc
Confidence 778999999999874 3456663 2 34555566777777777
No 12
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.66 E-value=2e-16 Score=149.97 Aligned_cols=102 Identities=37% Similarity=0.487 Sum_probs=76.5
Q ss_pred CCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHhhhhccCch
Q 005321 30 YSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPD-KANKTLSIIDSGVGMTKADLVNNLGTIARSGTK 108 (702)
Q Consensus 30 Ys~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~ 108 (702)
|+. +.+|+|||+||+||++.. +.|.|..+ .+...|.|.|||.||+.++|.. +++++.|++.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~~----------------I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGATN----------------IKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHHH----------------EEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCCE----------------EEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 555 899999999999999841 45666555 2458999999999999999997 7789988764
Q ss_pred hHHHHHhcCCCCccccccccc-ceeeeeecceEEEEeecCC-CceEEEEE
Q 005321 109 EFMEALQAGADVSMIGQFGVG-FYSAYLVAEKVIVTTKHND-DEQYVWES 156 (702)
Q Consensus 109 ~f~~~~~~~~~~~~iG~fGIG-f~S~F~vad~v~V~Sr~~~-~~~~~w~~ 156 (702)
.. .....+|+||+| ++|+|+++++++|+|+..+ ...+.|..
T Consensus 63 ~~-------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 63 SE-------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp HH-------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEE
T ss_pred ch-------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEE
Confidence 21 124579999999 8899999999999999863 34455443
No 13
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.39 E-value=1.8e-12 Score=139.94 Aligned_cols=163 Identities=23% Similarity=0.311 Sum_probs=107.8
Q ss_pred CCCc----hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHhhhhc
Q 005321 30 YSNK----EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPD-KANKTLSIIDSGVGMTKADLVNNLGTIAR 104 (702)
Q Consensus 30 Ys~~----~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~ 104 (702)
|++| ...+||||.||+|||+...++ +.+.|+|..- .+-.+++|+|||+|++.+.+.+.||++-.
T Consensus 30 f~~p~RsL~~tv~ElV~NSLDA~eeaGIL-----------PdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~Ly 98 (538)
T COG1389 30 FDGPIRSLTTTVHELVTNSLDACEEAGIL-----------PDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLY 98 (538)
T ss_pred CCCchhHHHHHHHHHHhcchhhHHhcCCC-----------CceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhc
Confidence 6665 468999999999999965543 4566666543 34468999999999999999999999988
Q ss_pred cCchhHHHHHhcCCCCcccccccccceeeeee-----cceEEEEeecCC-CceEEEEEcc----CceEEEEeC-CCCCCC
Q 005321 105 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLV-----AEKVIVTTKHND-DEQYVWESQA----GGSFTVTRD-VSGEPL 173 (702)
Q Consensus 105 S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~v-----ad~v~V~Sr~~~-~~~~~w~~~~----~~~~~i~~~-~~~~~~ 173 (702)
|++-+ ...+..||+|||.-+|.+. +..|.|.|+..+ +.++.++..- ...-.++.. -.....
T Consensus 99 gSKfh--------~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~ 170 (538)
T COG1389 99 GSKFH--------RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGG 170 (538)
T ss_pred cchhh--------hhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCC
Confidence 87542 1245679999997655444 688999998764 4555443321 111112221 111235
Q ss_pred CCceEEEEEeccchhhhhcHHH-HHHHHHHhcccCccc-eEE
Q 005321 174 GRGTKITLFLKEDQCEYLEERR-IKDLVKKHSEFISYP-IYL 213 (702)
Q Consensus 174 ~~GT~I~L~lk~~~~e~~~~~~-i~~ii~~ys~fl~~P-I~~ 213 (702)
+|||+|+|+++.... -...+ +.+++++-+-.-|+- |.|
T Consensus 171 ~hGT~Vel~~~~~~~--~~~~qgi~eYlkrtaiinPhA~I~l 210 (538)
T COG1389 171 WHGTRVELELKGVWY--RAKRQGIYEYLKRTAIINPHARIVL 210 (538)
T ss_pred CCceEEEEEecccch--hhcccCHHHHHHHHhhcCCceEEEE
Confidence 899999999997631 12223 556666555544444 555
No 14
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=99.26 E-value=4.7e-11 Score=131.91 Aligned_cols=166 Identities=27% Similarity=0.325 Sum_probs=113.6
Q ss_pred cHHHHHHHHHHhcCCC-----chhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCC
Q 005321 17 EINQLLSLIINTFYSN-----KEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN-KTLSIIDSGVGM 90 (702)
Q Consensus 17 e~~~ll~ll~~~LYs~-----~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGM 90 (702)
.|++|-+.++|.+..+ |.-+|+|||.|++||.+ ..|.|.+..+| +.|.|.|||.|+
T Consensus 7 ~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~S------------------T~I~V~vk~GGLKLlQisDnG~GI 68 (694)
T KOG1979|consen 7 KIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANS------------------TSIDVLVKDGGLKLLQISDNGSGI 68 (694)
T ss_pred hhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCC------------------ceEEEEEecCCeEEEEEecCCCcc
Confidence 3566777777776665 88899999999999985 57888886666 678999999999
Q ss_pred CHHHHHHHHhhhhccCchhHHHHHhcCCCCccccccccc--ceeeeeecceEEEEeecCCCceEEEE-EccCceEEEEeC
Q 005321 91 TKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVG--FYSAYLVAEKVIVTTKHNDDEQYVWE-SQAGGSFTVTRD 167 (702)
Q Consensus 91 t~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIG--f~S~F~vad~v~V~Sr~~~~~~~~w~-~~~~~~~~i~~~ 167 (702)
-++||.-...+.++|--..| .|...|..||.- .+|+..-+-+|+|+|+..++. +-|. +..+|... ..
T Consensus 69 ~reDl~ilCeRftTSKL~kF-------EDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~-cayrasY~DGkm~--~~ 138 (694)
T KOG1979|consen 69 RREDLPILCERFTTSKLTKF-------EDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGK-CAYRASYRDGKMI--AT 138 (694)
T ss_pred chhhhHHHHHHhhhhhcchh-------HHHHhhhhcCccHHHHhhhhheeEEEEEEeecCce-eeeEEEeeccccc--cC
Confidence 99999966666766632222 344555666332 246666677899999976443 2343 22334332 22
Q ss_pred CCCCCCCCceEEEE------------EeccchhhhhcHHHHHHHHHHhcccCccc-eEEec
Q 005321 168 VSGEPLGRGTKITL------------FLKEDQCEYLEERRIKDLVKKHSEFISYP-IYLWT 215 (702)
Q Consensus 168 ~~~~~~~~GT~I~L------------~lk~~~~e~~~~~~i~~ii~~ys~fl~~P-I~~~~ 215 (702)
|++-....||.|++ +|+..+.|| .+|-.++.+|+- ..| |.|..
T Consensus 139 pKpcAgk~GT~I~vedLFYN~~~Rrkal~~~~EE~---~ki~dlv~ryAI--Hn~~VsFs~ 194 (694)
T KOG1979|consen 139 PKPCAGKQGTIITVEDLFYNMPTRRKALRNHAEEY---RKIMDLVGRYAI--HNPRVSFSL 194 (694)
T ss_pred CCCccCCCceEEEehHhhccCHHHHHHhcCcHHHH---HHHHHHHHHHhe--eCCCcceEE
Confidence 33334689999998 344555666 489999999998 455 66643
No 15
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.19 E-value=1.4e-10 Score=131.37 Aligned_cols=157 Identities=21% Similarity=0.308 Sum_probs=101.6
Q ss_pred CCCc----hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEc--CC-CCEEEEEeCCCCCCHHHHHHHHhhh
Q 005321 30 YSNK----EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPD--KA-NKTLSIIDSGVGMTKADLVNNLGTI 102 (702)
Q Consensus 30 Ys~~----~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d--~~-~~~l~I~DnGiGMt~~dl~~~l~~I 102 (702)
|++| ..+|+|||+||+||++.... .+.+.|.+... .+ ...|+|+|||+||+.+++...|+..
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gi-----------lp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f 98 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGI-----------LPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKL 98 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCC-----------CceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhh
Confidence 5555 56799999999999973211 12344555432 22 2569999999999999999888776
Q ss_pred hccCchhHHHHHhcCCCCcccccccccceeeeeecc-----eEEEEeecCCCc-eEEEEEcc----CceEEEEeCCCCCC
Q 005321 103 ARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAE-----KVIVTTKHNDDE-QYVWESQA----GGSFTVTRDVSGEP 172 (702)
Q Consensus 103 a~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad-----~v~V~Sr~~~~~-~~~w~~~~----~~~~~i~~~~~~~~ 172 (702)
.++++. . ......|++|+|+.++.+++. .+.|.|+.+++. ++.++..- .+.-.+........
T Consensus 99 ~~~SK~------~--~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~ 170 (535)
T PRK04184 99 LYGSKF------H--NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWD 170 (535)
T ss_pred hccccc------c--ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCC
Confidence 443321 0 112456999999999887764 589999876544 55544321 11111111111124
Q ss_pred CCCceEEEEEeccchhhhhcHHHHHHHHHHhcccC
Q 005321 173 LGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFI 207 (702)
Q Consensus 173 ~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl 207 (702)
.++||+|.+.++..... ...+|.++|++++..-
T Consensus 171 ~~~GT~V~V~l~~~~~~--~~~~I~e~i~r~Al~n 203 (535)
T PRK04184 171 RWHGTRVELEIEGDWYR--AKQRIYEYLKRTAIVN 203 (535)
T ss_pred CCCCEEEEEEECCcChh--hHHHHHHHHHHHHHhC
Confidence 57999999998865432 2578999999999843
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.08 E-value=5.7e-10 Score=129.06 Aligned_cols=149 Identities=20% Similarity=0.285 Sum_probs=99.1
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN--KTLSIIDSGVGMTKADLVNNLGTIARSGTKEFME 112 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~ 112 (702)
.+|+|||.||+||+..- ...+.|.|.+...+ ..|+|.|||+||+++++.+.|..++++++-.
T Consensus 49 tVLkNLIeNALDAs~~~-------------gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~--- 112 (795)
T PRK14868 49 TAVKEAVDNALDATEEA-------------GILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFH--- 112 (795)
T ss_pred HHHHHHHHHHHHhCccc-------------CCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccccc---
Confidence 68999999999998621 01124555443333 4699999999999999999998887654311
Q ss_pred HHhcCCCCcccccccccceeeeeecc-----eEEEEeecCC-CceEEEEE--ccCc---eEEEEeCCCCCCCCCceEEEE
Q 005321 113 ALQAGADVSMIGQFGVGFYSAYLVAE-----KVIVTTKHND-DEQYVWES--QAGG---SFTVTRDVSGEPLGRGTKITL 181 (702)
Q Consensus 113 ~~~~~~~~~~iG~fGIGf~S~F~vad-----~v~V~Sr~~~-~~~~~w~~--~~~~---~~~i~~~~~~~~~~~GT~I~L 181 (702)
......|+.|+|+-++.+++. .+.|+|+..+ ..++.|.. +++. ........ ....++||+|+|
T Consensus 113 -----~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~-~~~~~~GT~IeV 186 (795)
T PRK14868 113 -----AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETT-TWDRPHGTRIEL 186 (795)
T ss_pred -----ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceec-ccCCCCceEEEE
Confidence 111345899999988887764 4899998754 45654443 3331 21111111 124589999999
Q ss_pred EeccchhhhhcHHHHHHHHHHhcccCccc
Q 005321 182 FLKEDQCEYLEERRIKDLVKKHSEFISYP 210 (702)
Q Consensus 182 ~lk~~~~e~~~~~~i~~ii~~ys~fl~~P 210 (702)
.|... |.-..+|.++|++++. ..|
T Consensus 187 ~Lf~N---~pAR~kI~eyl~r~Al--~nP 210 (795)
T PRK14868 187 EMEAN---MRARQQLHDYIKHTAV--VNP 210 (795)
T ss_pred EEEcc---CchhhhHHHHHHHHHh--hCC
Confidence 97653 3345679999999988 555
No 17
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.06 E-value=1.2e-09 Score=122.82 Aligned_cols=150 Identities=20% Similarity=0.274 Sum_probs=95.9
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcC--CC-CEEEEEeCCCCCCHHHHHHHHhhhhccCchhHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDK--AN-KTLSIIDSGVGMTKADLVNNLGTIARSGTKEFM 111 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~-~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~ 111 (702)
.+++|||.||+||++... ....|.|.+.. .+ ..|+|.|||.||+.+++...|....++++.
T Consensus 31 ~VlkELVeNAIDA~~~~g-------------~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~--- 94 (488)
T TIGR01052 31 TVIHELVTNSLDACEEAG-------------ILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKF--- 94 (488)
T ss_pred HHHHHHHHHHHHHhhccC-------------CCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcc---
Confidence 578999999999986311 01244444432 22 379999999999999999888875444321
Q ss_pred HHHhcCCCCcccccccccceeeeeecc-----eEEEEeecCCC-ceEEEEEc-----cCceEEEEeCCCCCCCCCceEEE
Q 005321 112 EALQAGADVSMIGQFGVGFYSAYLVAE-----KVIVTTKHNDD-EQYVWESQ-----AGGSFTVTRDVSGEPLGRGTKIT 180 (702)
Q Consensus 112 ~~~~~~~~~~~iG~fGIGf~S~F~vad-----~v~V~Sr~~~~-~~~~w~~~-----~~~~~~i~~~~~~~~~~~GT~I~ 180 (702)
. ......|++|+|+.++.+++. .++|+|+..+. .++.++.. .+|. .+...+.+...++||+|+
T Consensus 95 ---~--~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~-i~~~~~~~~~~~~GT~V~ 168 (488)
T TIGR01052 95 ---H--RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGE-IVEKGEWNKPGWRGTRIE 168 (488)
T ss_pred ---c--cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCe-ecceeecCCCCCCceEEE
Confidence 1 123456999999998888875 49999987643 34455442 1222 111111112225899999
Q ss_pred EEeccchhhhhcHHHHHHHHHHhcccC
Q 005321 181 LFLKEDQCEYLEERRIKDLVKKHSEFI 207 (702)
Q Consensus 181 L~lk~~~~e~~~~~~i~~ii~~ys~fl 207 (702)
+.+......+ ...+|.+++++++-.-
T Consensus 169 v~f~~~~~r~-~k~~i~e~l~~~Al~n 194 (488)
T TIGR01052 169 LEFKGVSYRR-SKQGVYEYLRRTAVAN 194 (488)
T ss_pred EEECCceeec-cHHHHHHHHHHHHhhC
Confidence 9865433221 3468999999998843
No 18
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.96 E-value=6.5e-09 Score=120.16 Aligned_cols=155 Identities=20% Similarity=0.272 Sum_probs=90.8
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN-KTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEA 113 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~ 113 (702)
.+++|||.||+||+.... ..+.+.|.+.....+ -.|+|.|||.||+.+++...|...-++++
T Consensus 39 ~VVkELVeNAIDA~~~~g-----------~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK------ 101 (659)
T PRK14867 39 TIIHELVTNSLDACEEAE-----------ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSK------ 101 (659)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCc------
Confidence 678999999999996311 012234444332222 35999999999999999988877432221
Q ss_pred HhcCCCCcccccccccceeeeeecc-----eEEEEeecCCCceE--EEEEc---cCceEEEEeCCCCCCCCCceEEEEEe
Q 005321 114 LQAGADVSMIGQFGVGFYSAYLVAE-----KVIVTTKHNDDEQY--VWESQ---AGGSFTVTRDVSGEPLGRGTKITLFL 183 (702)
Q Consensus 114 ~~~~~~~~~iG~fGIGf~S~F~vad-----~v~V~Sr~~~~~~~--~w~~~---~~~~~~i~~~~~~~~~~~GT~I~L~l 183 (702)
+. .-....|++|+|+.++.+++. .+.|.|+..++..+ .|... .+|...-... ....++||+|++.+
T Consensus 102 ~~--~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~--~~~~~~GT~Ie~~V 177 (659)
T PRK14867 102 MH--RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKV--REGFWRGTRVEGEF 177 (659)
T ss_pred cc--ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeeccccc--CCCCCCCcEEEEEE
Confidence 11 012455899999987766654 36888886544432 22221 1122211111 12357999999655
Q ss_pred ccchhhhhcHHHHHHHHHHhcccCccc-eEE
Q 005321 184 KEDQCEYLEERRIKDLVKKHSEFISYP-IYL 213 (702)
Q Consensus 184 k~~~~e~~~~~~i~~ii~~ys~fl~~P-I~~ 213 (702)
++-..... +..+.+++++++. .+| |.|
T Consensus 178 ~dLFynR~-E~~i~e~l~r~AL--anP~i~f 205 (659)
T PRK14867 178 KEVTYNRR-EQGPFEYLRRISL--STPHAKI 205 (659)
T ss_pred eeceechh-hHHHHHHHHHHHH--hCCCcEE
Confidence 43111111 2248899999988 666 444
No 19
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.87 E-value=6.2e-08 Score=113.36 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=97.8
Q ss_pred chhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH--------HHhhhhc
Q 005321 33 KEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVN--------NLGTIAR 104 (702)
Q Consensus 33 ~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~--------~l~~Ia~ 104 (702)
+...++|||.||+|++.. .....|.|.++.+ +.|+|.|||.||+.+.... .|+++-.
T Consensus 38 l~~lv~EivdNaiDe~~a--------------g~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lha 102 (631)
T PRK05559 38 LHHLVQEVIDNSVDEALA--------------GHGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHA 102 (631)
T ss_pred hhhhhhhhhccccchhhc--------------CCCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeeccc
Confidence 467999999999999741 1124677777655 4899999999999998876 5665333
Q ss_pred cCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEEEEEe
Q 005321 105 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGS-FTVTRDVSGEPLGRGTKITLFL 183 (702)
Q Consensus 105 S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~GT~I~L~l 183 (702)
+|+- .........|..|+|..++-+++.+++|+|+..+ ..|.++...+.. -.+..........+||+|++..
T Consensus 103 gsKf------~~~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g-~~~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~P 175 (631)
T PRK05559 103 GGKF------SNKAYKFSGGLHGVGVSVVNALSSRLEVEVKRDG-KVYRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWP 175 (631)
T ss_pred cCcc------CCccccccCcccccchhhhhhheeeEEEEEEeCC-eEEEEEEECCcCccCccccccccCCCCCcEEEEEE
Confidence 3321 1111124579999999999999999999998653 224333332211 1111111111157999999964
Q ss_pred ccch--hhhhcHHHHHHHHHHhccc
Q 005321 184 KEDQ--CEYLEERRIKDLVKKHSEF 206 (702)
Q Consensus 184 k~~~--~e~~~~~~i~~ii~~ys~f 206 (702)
.... ..-++...|.+.+++++-.
T Consensus 176 D~~iF~~~~~~~~~i~~~l~~~A~l 200 (631)
T PRK05559 176 DPKIFDSPKFSPERLKERLRSKAFL 200 (631)
T ss_pred CHHHcCCcccCHHHHHHHHHHHHhh
Confidence 3221 1123567789999988863
No 20
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.75 E-value=2.1e-07 Score=108.30 Aligned_cols=146 Identities=21% Similarity=0.249 Sum_probs=89.7
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhhhhccCch
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLV-------NNLGTIARSGTK 108 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~l~~Ia~S~~~ 108 (702)
.++|||.||+||... .....|.|.++.++ .|+|.|||.||+.+... ..+.++..+|.+
T Consensus 5 ~v~ElvdNAiD~~~~--------------g~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k 69 (594)
T smart00433 5 LVDEIVDNAADEALA--------------GYMDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK 69 (594)
T ss_pred EEeeehhcccchhcc--------------CCCCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC
Confidence 578999999999742 11357777777654 99999999999853321 112222222211
Q ss_pred hHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCce-EE-EEeCCCCCCCCCceEEEEEeccc
Q 005321 109 EFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGS-FT-VTRDVSGEPLGRGTKITLFLKED 186 (702)
Q Consensus 109 ~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~-~~-i~~~~~~~~~~~GT~I~L~lk~~ 186 (702)
| .........|..|+|..++-+++.+++|+|+.++. .|.++...+|. -+ +... +.....||+|+. .++
T Consensus 70 -f----d~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~-~~~~~~~~~G~~~~~~~~~--~~~~~~GT~V~F--~Pd 139 (594)
T smart00433 70 -F----DDDAYKVSGGLHGVGASVVNALSTEFEVEVARDGK-EYKQSFSNNGKPLSEPKII--GDTKKDGTKVTF--KPD 139 (594)
T ss_pred -C----CCCCccccCCcccchHHHHHHhcCceEEEEEeCCc-EEEEEEeCCCeECccceec--CCCCCCCcEEEE--EEC
Confidence 1 11112336799999999999999999999987633 34443322121 11 1111 123479999995 344
Q ss_pred hhhhh-----cHHHHHHHHHHhccc
Q 005321 187 QCEYL-----EERRIKDLVKKHSEF 206 (702)
Q Consensus 187 ~~e~~-----~~~~i~~ii~~ys~f 206 (702)
..-|. +...|.+.++.++-.
T Consensus 140 ~~~F~~~~~~~~~~i~~rl~~~A~l 164 (594)
T smart00433 140 LEIFGMTTDDDFELLKRRLRELAFL 164 (594)
T ss_pred HHHhCCcccchHHHHHHHHHHHHhc
Confidence 43342 346788889988763
No 21
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.70 E-value=5.7e-07 Score=105.94 Aligned_cols=150 Identities=18% Similarity=0.200 Sum_probs=92.2
Q ss_pred hhHHHHHHHcHHh---HhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhhhh
Q 005321 34 EIFLRELISNSSD---ALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLV-------NNLGTIA 103 (702)
Q Consensus 34 ~v~lRELIqNA~D---A~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~l~~Ia 103 (702)
...++|||.||+| |+- ...|.|.++.+ +.|+|.|||.||+.+--. ..+.++.
T Consensus 32 ~~vv~Elv~NaiDe~~ag~-----------------a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l 93 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAMAGY-----------------CDTINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVL 93 (654)
T ss_pred HhhhHHhhhccccccccCC-----------------CCEEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeee
Confidence 5689999999999 431 24677777654 569999999999975100 0122222
Q ss_pred ccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEE-EEeCCCCCCCCCceEEEEE
Q 005321 104 RSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFT-VTRDVSGEPLGRGTKITLF 182 (702)
Q Consensus 104 ~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~-i~~~~~~~~~~~GT~I~L~ 182 (702)
.+|.+ | .........|..|+|..|+-.++.+++|+|+..+. .|..+..++..-. +... +....+||+|+.+
T Consensus 94 ~ag~k-f----~~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~-~~~~~~~~G~~~~~l~~~--~~~~~~GT~V~F~ 165 (654)
T TIGR01059 94 HAGGK-F----DKDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGK-IYRQEFERGIPLGPLEVV--GETKKTGTTVRFW 165 (654)
T ss_pred cccCc-c----CCCcceecCCccchhHHHHHHhcCeEEEEEEECCe-EEEEEEeCCCcccCceec--cCCCCCCcEEEEE
Confidence 22221 1 11112246799999999999999999999986543 2443333332111 1111 2345799999955
Q ss_pred eccchhhh----hcHHHHHHHHHHhcccCccc-eEE
Q 005321 183 LKEDQCEY----LEERRIKDLVKKHSEFISYP-IYL 213 (702)
Q Consensus 183 lk~~~~e~----~~~~~i~~ii~~ys~fl~~P-I~~ 213 (702)
..+. -| .+...|.+.++.++- .+| |.+
T Consensus 166 pdp~--~F~~~~~e~~~i~~rl~~~A~--l~pgl~i 197 (654)
T TIGR01059 166 PDPE--IFETTEFDFDILAKRLRELAF--LNSGVKI 197 (654)
T ss_pred EChH--HhCCcccCHHHHHHHHHHhhc--cCCCeEE
Confidence 3322 23 366789999999985 344 544
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.67 E-value=5.5e-08 Score=113.49 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=99.0
Q ss_pred CchhHHHHHHHcHHh---HhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHh
Q 005321 32 NKEIFLRELISNSSD---ALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKAD--------LVNNLG 100 (702)
Q Consensus 32 ~~~v~lRELIqNA~D---A~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d--------l~~~l~ 100 (702)
++...|+|||.||+| |+- ...|.|.++.+ +.|+|.|||.||+.++ +...|+
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag~-----------------a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t 91 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAGF-----------------ASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILT 91 (625)
T ss_pred CcceeehhhhhcccchhhcCC-----------------CCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhh
Confidence 357899999999999 531 24677777655 8999999999999988 765563
Q ss_pred hhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEE
Q 005321 101 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGS-FTVTRDVSGEPLGRGTKI 179 (702)
Q Consensus 101 ~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~GT~I 179 (702)
+.-.+|+ +....-....|..|+|..++-.++.+++|.|+..+.. |.++..++.. -.+...........||+|
T Consensus 92 ~lhagsK------~~~~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V 164 (625)
T TIGR01055 92 TLHAGGK------FSNKNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSV 164 (625)
T ss_pred cccccCC------CCCCcceecCCCcchhHHHHHHhcCeEEEEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEE
Confidence 3322222 2111112457999999999999999999999865432 4444433311 011111011123589999
Q ss_pred EEEeccch--hhhhcHHHHHHHHHHhcccCc-cceEEe
Q 005321 180 TLFLKEDQ--CEYLEERRIKDLVKKHSEFIS-YPIYLW 214 (702)
Q Consensus 180 ~L~lk~~~--~e~~~~~~i~~ii~~ys~fl~-~PI~~~ 214 (702)
++...... ..-.+..+|.+.+++++-..| .-|.++
T Consensus 165 ~F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~ 202 (625)
T TIGR01055 165 HFTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFE 202 (625)
T ss_pred EEEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEe
Confidence 98533211 011255789999998887432 224554
No 23
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.62 E-value=6.2e-08 Score=110.15 Aligned_cols=151 Identities=18% Similarity=0.234 Sum_probs=97.9
Q ss_pred HHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHhhh
Q 005321 24 LIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN-KTLSIIDSGVGMTKADLVNNLGTI 102 (702)
Q Consensus 24 ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~l~~I 102 (702)
|-+.+...+..++|+|||.||.||++ ..|+|.++.-| ..|.|.|||.|++..+..---..+
T Consensus 12 I~S~qvI~sl~sAVKELvENSiDAGA------------------T~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh 73 (672)
T KOG1978|consen 12 ICSSQVITSLVSAVKELVENSIDAGA------------------TAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKH 73 (672)
T ss_pred cccCCeeccHHHHHHHHHhcCcccCC------------------ceeeEecCCCCcceEEEecCCCCCCccchhhhhhhh
Confidence 34455666778999999999999997 46777765444 789999999999999887422222
Q ss_pred hccCchhHHHHHhcCCCCc---ccccccccceeeeeecceEEEEeecC-CCceEEEEEccCceEEEEeCCCCCCCCCceE
Q 005321 103 ARSGTKEFMEALQAGADVS---MIGQFGVGFYSAYLVAEKVIVTTKHN-DDEQYVWESQAGGSFTVTRDVSGEPLGRGTK 178 (702)
Q Consensus 103 a~S~~~~f~~~~~~~~~~~---~iG~fGIGf~S~F~vad~v~V~Sr~~-~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~ 178 (702)
-+| ++.+-.|.. -.|..|=.+ |+.+.-..|.|.|++. +..+..|.-+..|..+-.. .-+.++||+
T Consensus 74 ~TS-------Ki~~f~Dl~~l~T~GFRGEAL-SsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~~k~---~~ar~~GTT 142 (672)
T KOG1978|consen 74 TTS-------KIVSFADLAVLFTLGFRGEAL-SSLCALGDVMISTRSHSAKVGTRLVYDHDGHIIQKK---PVARGRGTT 142 (672)
T ss_pred hhh-------cccchhhhhhhhhhhhHHHHH-HhhhhccceEEEEeeccCccceeEEEccCCceeeec---cccCCCCCE
Confidence 223 232223332 344444444 5555545588999985 4567888887766654221 135689999
Q ss_pred EEEE-e------cc------chhhhhcHHHHHHHHHHhccc
Q 005321 179 ITLF-L------KE------DQCEYLEERRIKDLVKKHSEF 206 (702)
Q Consensus 179 I~L~-l------k~------~~~e~~~~~~i~~ii~~ys~f 206 (702)
|.+. | +. -.++| .++..++..|+.+
T Consensus 143 V~v~~LF~tLPVR~kef~r~~Kref---~k~i~li~~y~li 180 (672)
T KOG1978|consen 143 VMVRQLFSTLPVRRKEFQRNIKRKF---VKLISLIQAYALI 180 (672)
T ss_pred EEHhhhcccCCCchHHhhcchhhhh---hhHHhhHHHHHhh
Confidence 9983 1 11 11333 3677888888875
No 24
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.48 E-value=3.4e-07 Score=107.27 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=90.7
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhhhhccC
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLV-------NNLGTIARSG 106 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~l~~Ia~S~ 106 (702)
...++|||.||+|.... .....|.|.++.+ +.|+|.|||.||+.+--. ..+.++-.+|
T Consensus 39 ~~~v~ElvdNaiDe~~a--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag 103 (638)
T PRK05644 39 HHLVYEIVDNSIDEALA--------------GYCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAG 103 (638)
T ss_pred HhhhHHhhhcccccccC--------------CCCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeeccc
Confidence 45899999999993210 0124677777654 599999999999986211 1122222222
Q ss_pred chhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceE-EEEeCCCCCCCCCceEEEEEecc
Q 005321 107 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSF-TVTRDVSGEPLGRGTKITLFLKE 185 (702)
Q Consensus 107 ~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~-~i~~~~~~~~~~~GT~I~L~lk~ 185 (702)
.+ | .........|..|+|.-++-.++.+++|+|+..+ .+|..+..++..- .+... +.....||+|+. .+
T Consensus 104 ~k-f----d~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g-~~~~~~~~~G~~~~~~~~~--~~~~~~GT~I~F--~P 173 (638)
T PRK05644 104 GK-F----GGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDG-KIYYQEYERGVPVTPLEVI--GETDETGTTVTF--KP 173 (638)
T ss_pred Cc-c----CCCcccccCCccccchhhhhheeceEEEEEEeCC-cEEEEEEECCeEccCcccc--CCcCCCCcEEEE--EE
Confidence 21 1 1111123579999999999999999999998653 3454444432111 11211 223579999995 33
Q ss_pred chhhh----hcHHHHHHHHHHhccc
Q 005321 186 DQCEY----LEERRIKDLVKKHSEF 206 (702)
Q Consensus 186 ~~~e~----~~~~~i~~ii~~ys~f 206 (702)
+..-| ++...|.+.++.++-.
T Consensus 174 d~~~F~~~~~e~~~i~~rl~~~A~l 198 (638)
T PRK05644 174 DPEIFETTEFDYDTLATRLRELAFL 198 (638)
T ss_pred CHHHcCCcccCHHHHHHHHHHHHhh
Confidence 33222 3567899999999863
No 25
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.42 E-value=4.6e-07 Score=81.89 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=58.9
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++.||++||+++.... ..+.|.+..+.+.-.|+|.|||.||+.+++...+.....+.
T Consensus 8 ~il~~ll~Na~~~~~~~--------------~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~-------- 65 (111)
T PF02518_consen 8 QILSELLDNAIKHSPEG--------------GKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSD-------- 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHT--------------SEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSS--------
T ss_pred HHHHHHHHHHHHHhcCC--------------CEEEEEEEEecCeEEEEEEeccccccccccccchhhccccc--------
Confidence 57899999999998631 23555555555567899999999999999996554332221
Q ss_pred hcCCCCcccccccccceeeeeecceE
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAEKV 140 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad~v 140 (702)
.+....+.+|+|++.|-.+++..
T Consensus 66 ---~~~~~~~g~GlGL~~~~~~~~~~ 88 (111)
T PF02518_consen 66 ---KSETSISGHGLGLYIVKQIAERH 88 (111)
T ss_dssp ---SSSGGSSSSSHHHHHHHHHHHHT
T ss_pred ---ccccccCCCChHHHHHHHHHHHC
Confidence 12345677999999998888753
No 26
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.38 E-value=7.7e-07 Score=105.17 Aligned_cols=143 Identities=16% Similarity=0.206 Sum_probs=90.7
Q ss_pred hhHHHHHHHcHHh---HhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH----------HHHHHHh
Q 005321 34 EIFLRELISNSSD---ALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKA----------DLVNNLG 100 (702)
Q Consensus 34 ~v~lRELIqNA~D---A~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~----------dl~~~l~ 100 (702)
...++|||.||+| |+- ...|+|+++.+ +.|+|.|||.||+.+ |+. |+
T Consensus 39 hhlv~EivdNaiDE~~AG~-----------------a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt 98 (756)
T PRK14939 39 HHMVYEVVDNAIDEALAGH-----------------CDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT 98 (756)
T ss_pred hhhhhHhhcccccccccCC-----------------CCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee
Confidence 4689999999999 431 24677777754 599999999999987 444 22
Q ss_pred hhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEE-EEeCCCCCCCCCceEE
Q 005321 101 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFT-VTRDVSGEPLGRGTKI 179 (702)
Q Consensus 101 ~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~-i~~~~~~~~~~~GT~I 179 (702)
..++|.+ +..+.-.-.-|..|+|..++-.++.+++|+|+..+. .|..+...+..-. +... +....+||+|
T Consensus 99 -~lhAggK-----fd~~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk-~~~q~f~~G~~~~~l~~~--g~~~~~GT~V 169 (756)
T PRK14939 99 -VLHAGGK-----FDQNSYKVSGGLHGVGVSVVNALSEWLELTIRRDGK-IHEQEFEHGVPVAPLKVV--GETDKTGTEV 169 (756)
T ss_pred -eecccCC-----CCCCcccccCCccCccceEeehccCeEEEEEEeCCe-EEEEEEecCccccCcccc--CCcCCCCcEE
Confidence 3333322 111111225699999999999999999999986543 2433333221111 1211 2235799999
Q ss_pred EEEeccch--hhhhcHHHHHHHHHHhcc
Q 005321 180 TLFLKEDQ--CEYLEERRIKDLVKKHSE 205 (702)
Q Consensus 180 ~L~lk~~~--~e~~~~~~i~~ii~~ys~ 205 (702)
+....... ..-++...|.+.++.++-
T Consensus 170 ~F~PD~~iF~~~~~~~~~i~~rl~elA~ 197 (756)
T PRK14939 170 RFWPSPEIFENTEFDYDILAKRLRELAF 197 (756)
T ss_pred EEEECHHHcCCcccCHHHHHHHHHHHhh
Confidence 99533221 112366788888888875
No 27
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.71 E-value=1.8e-05 Score=89.86 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=74.8
Q ss_pred CchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHH
Q 005321 32 NKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFM 111 (702)
Q Consensus 32 ~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~ 111 (702)
+-.-+++||+.|++||.+ ..|.|.++-..-.+.|.|||+||+++||. .||+--.-++-.|.
T Consensus 21 sla~~VeElv~NSiDA~A------------------t~V~v~V~~~t~sv~ViDdG~G~~rdDl~-~lg~ry~TSK~h~~ 81 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEA------------------TCVAVRVNMETFSVQVIDDGFGMGRDDLE-KLGNRYFTSKCHSV 81 (1142)
T ss_pred HHHHHHHHHHhhccccCc------------------eEEEEEecCceeEEEEEecCCCccHHHHH-HHHhhhhhhhceec
Confidence 345689999999999987 34555555567889999999999999998 45432111111111
Q ss_pred HHHhcCCCCcccccccccceeeeeecceEEEEeecCCC-ceEE--EEEccCceEEEEeCCCCCCCCCceEEEEE
Q 005321 112 EALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDD-EQYV--WESQAGGSFTVTRDVSGEPLGRGTKITLF 182 (702)
Q Consensus 112 ~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~-~~~~--w~~~~~~~~~i~~~~~~~~~~~GT~I~L~ 182 (702)
..+ ......|..|-.++|.-=++. ++|+|+..+. .++. -...|...-.+..+ ..+...||+|+++
T Consensus 82 ndl---~~~~tyGfRGeALasIsd~s~-l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD--~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 82 NDL---ENPRTYGFRGEALASISDMSS-LVVISKKKNRTMKTFVKKFQSGSALKALEID--VTRASSGTTVTVY 149 (1142)
T ss_pred ccc---ccccccccchhhhhhhhhhhh-hhhhhhhcCCchhHHHHHHhccccceecccc--cccccCCcEEEeH
Confidence 111 123456666666666555544 6677776432 2222 11122222222222 2566899999984
No 28
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.40 E-value=0.00064 Score=79.93 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=91.8
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhhhhccC
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLV-------NNLGTIARSG 106 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~l~~Ia~S~ 106 (702)
...+.|+|.||+|=.-. .....|.|++++ ++.|+|.|||.||..+--. ..+.++..+|
T Consensus 36 ~hlv~EIvdNavDE~~a--------------g~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaG 100 (637)
T TIGR01058 36 HHLVWEIVDNSVDEVLA--------------GYADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAG 100 (637)
T ss_pred heehhhhhcchhhhhhc--------------CCCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEeccc
Confidence 45788999999994321 123467777774 5699999999999863111 1111222222
Q ss_pred chhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCc-eEEEEEccCceEEEEeC-CCCCCCCCceEEEEEec
Q 005321 107 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDE-QYVWESQAGGSFTVTRD-VSGEPLGRGTKITLFLK 184 (702)
Q Consensus 107 ~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~-~~~w~~~~~~~~~i~~~-~~~~~~~~GT~I~L~lk 184 (702)
.+ | ..+.-.-.-|.-|+|.-.+=+++++++|.++..+.. ...|+..+ ..+.+. ..+....+||+|+....
T Consensus 101 gk-f----d~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg---~~~~~l~~~~~~~~~GT~V~F~PD 172 (637)
T TIGR01058 101 GK-F----DQGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGG---KIVQSLKKIGTTKKTGTLVHFHPD 172 (637)
T ss_pred Cc-C----CCCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCC---cCcCCcccccCCCCCceEEEEEeC
Confidence 21 1 111112345999999999999999999999854321 12343211 111111 01233469999998755
Q ss_pred cchh--hhhcHHHHHHHHHHhcccCc-cceEEec
Q 005321 185 EDQC--EYLEERRIKDLVKKHSEFIS-YPIYLWT 215 (702)
Q Consensus 185 ~~~~--e~~~~~~i~~ii~~ys~fl~-~PI~~~~ 215 (702)
..-- .-++.+.|..-++..+-..+ .-|.+++
T Consensus 173 ~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~d 206 (637)
T TIGR01058 173 PTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTD 206 (637)
T ss_pred HHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 4321 11356677777777775332 3466654
No 29
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.36 E-value=0.00077 Score=57.66 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=56.1
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.+++|||.||.++... ....+.|.+..+...-.|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4789999999999752 012345555554444568999999999999988655433111
Q ss_pred hcCCCCcccccccccceeeeeecc----eEEEEe
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE----KVIVTT 144 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad----~v~V~S 144 (702)
......+.+|+|+..+-.+++ .+.+.+
T Consensus 61 ---~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~ 91 (103)
T cd00075 61 ---SRSRKGGGTGLGLSIVKKLVELHGGRIEVES 91 (103)
T ss_pred ---CCCCCCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 112234678999988777776 555544
No 30
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.23 E-value=0.00059 Score=74.14 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=48.1
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++..||+||+.+.. ....+.|.+..+.+.-.|+|+|||+||+++++.+.+... ...
T Consensus 250 ~il~nLi~NA~k~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~-------- 306 (356)
T PRK10755 250 LLLRNLVENAHRYSP--------------EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAF-VRM-------- 306 (356)
T ss_pred HHHHHHHHHHHhhCC--------------CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCe-EeC--------
Confidence 468888899877642 112355555555555679999999999999988533221 100
Q ss_pred hcCCCCcccccccccceeeeeecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
+ ..-|.+|+|++-|-.+++
T Consensus 307 ----~-~~~~g~GlGL~i~~~i~~ 325 (356)
T PRK10755 307 ----D-SRYGGIGLGLSIVSRITQ 325 (356)
T ss_pred ----C-CCCCCcCHHHHHHHHHHH
Confidence 0 112567999977665554
No 31
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.08 E-value=0.0009 Score=79.75 Aligned_cols=74 Identities=24% Similarity=0.332 Sum_probs=48.0
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
.+.+||+||.++... ...+.|++..+.+.-.|+|.|||.||+++.+...+..-..+++
T Consensus 583 vl~nLl~NAik~~~~--------------~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~-------- 640 (679)
T TIGR02916 583 VLGHLVQNALEATPG--------------EGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTK-------- 640 (679)
T ss_pred HHHHHHHHHHHhCCC--------------CCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCC--------
Confidence 688999999988631 1234555544444456899999999999985544433222211
Q ss_pred cCCCCcccccccccceeeeeecc
Q 005321 116 AGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~vad 138 (702)
. +..|+|.+.+-.+++
T Consensus 641 -----~--~G~GLGL~i~~~iv~ 656 (679)
T TIGR02916 641 -----G--AGMGIGVYECRQYVE 656 (679)
T ss_pred -----C--CCcchhHHHHHHHHH
Confidence 1 567999987766554
No 32
>PRK10604 sensor protein RstB; Provisional
Probab=97.05 E-value=0.001 Score=74.73 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=49.7
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++..||.||+.+.. ..+.|.+..+.+.-.|+|.|||.||+.+++.+-+....+...
T Consensus 322 ~vl~NLl~NAik~~~----------------~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~------- 378 (433)
T PRK10604 322 RVLDNLLNNALRYAH----------------SRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDP------- 378 (433)
T ss_pred HHHHHHHHHHHHhCC----------------CeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCC-------
Confidence 368888899887642 235566665555567999999999999998865543322110
Q ss_pred hcCCCCcccccccccceeeeeecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
+....-|.+|+|+.-+-.+++
T Consensus 379 ---~~~~~~~g~GLGL~ivk~i~~ 399 (433)
T PRK10604 379 ---SRDRATGGCGLGLAIVHSIAL 399 (433)
T ss_pred ---CCCCCCCCccchHHHHHHHHH
Confidence 111223678999875544443
No 33
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.87 E-value=0.0026 Score=55.24 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=54.2
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++.||+.||+++... ...+.|.+..+.....|.|.|+|.||+.+.+...+.....+ .
T Consensus 8 ~~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~-~------- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRT-D------- 65 (111)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEEC-C-------
Confidence 3578899998888742 12356666655555679999999999999888655432211 1
Q ss_pred hcCCCCcccccccccceeeeeecceE
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAEKV 140 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad~v 140 (702)
......++.|+|+..+-.++.+.
T Consensus 66 ---~~~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 66 ---GRSRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred ---CCCCCCCcccccHHHHHHHHHHc
Confidence 11233567899998887776654
No 34
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.86 E-value=0.0023 Score=71.94 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=48.0
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
++..||.||+.+.. ..+.+.|.+..+.+.-.|.|.|||.||+++++.+-+...-++.
T Consensus 356 vl~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~--------- 412 (466)
T PRK10549 356 LFNNLLENSLRYTD--------------SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTE--------- 412 (466)
T ss_pred HHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCC---------
Confidence 56788888877742 1123445554444445689999999999998886544332111
Q ss_pred cCCCCcccccccccceeeeeecc
Q 005321 116 AGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~vad 138 (702)
.......|..|+|++-+-.+++
T Consensus 413 -~~~~~~~~g~GlGL~iv~~i~~ 434 (466)
T PRK10549 413 -GSRNRASGGSGLGLAICLNIVE 434 (466)
T ss_pred -CCcCCCCCCCcHHHHHHHHHHH
Confidence 0111234678999976655544
No 35
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.83 E-value=0.0055 Score=76.79 Aligned_cols=162 Identities=17% Similarity=0.235 Sum_probs=93.8
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HH-Hhhhhcc
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLV-------NN-LGTIARS 105 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~-l~~Ia~S 105 (702)
.-.+.|+|-||.|-.-. ++ ....|.|+++.+++.|+|.|||.||.-+--. .. |+++-.|
T Consensus 79 ~kifdEIldNAvDe~~r-------~g------~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAG 145 (1465)
T PLN03237 79 YKIFDEILVNAADNKQR-------DP------KMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTS 145 (1465)
T ss_pred hhhHHHHhhhhHhHHhh-------cC------CCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeecc
Confidence 35789999999997521 11 2357888888778999999999999864111 11 2222233
Q ss_pred CchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecC-CCceE--EEEEccCc-eE-EEEeCCCCCCCCCceEEE
Q 005321 106 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHN-DDEQY--VWESQAGG-SF-TVTRDVSGEPLGRGTKIT 180 (702)
Q Consensus 106 ~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~-~~~~~--~w~~~~~~-~~-~i~~~~~~~~~~~GT~I~ 180 (702)
|+- ..+.....-|..|+|.-.+=.++.+++|.++.+ .+..| .|+.+.+. .- .+.. .....+||+|+
T Consensus 146 gkF------dd~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~---~~~~~~GT~Vt 216 (1465)
T PLN03237 146 SNY------DDNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITK---CKKSENWTKVT 216 (1465)
T ss_pred ccC------CCCcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceecc---CCCCCCceEEE
Confidence 321 111122356999999999999999999999732 12333 45532111 10 1111 11236999998
Q ss_pred EEeccchh--hhhcHHHHHHHHHH---hcccCc--cceEEeccc
Q 005321 181 LFLKEDQC--EYLEERRIKDLVKK---HSEFIS--YPIYLWTEK 217 (702)
Q Consensus 181 L~lk~~~~--e~~~~~~i~~ii~~---ys~fl~--~PI~~~~~~ 217 (702)
..-....- .-++.+.|..+.++ .+.|+. .-|+|+++.
T Consensus 217 F~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 217 FKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred EEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 86433211 11255555544333 344553 567777653
No 36
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.80 E-value=0.0034 Score=70.27 Aligned_cols=79 Identities=20% Similarity=0.143 Sum_probs=47.8
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
..+.+||.||+.+.. +...+.|.+..+.+.-.|+|.|||.||+.+++...+. ...+...
T Consensus 371 ~vl~nli~Na~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~-~~~~~~~------ 429 (475)
T PRK11100 371 QALGNLLDNAIDFSP--------------EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFE-RFYSLPR------ 429 (475)
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHH-HHccCCC------
Confidence 357888888887742 1123445554444445699999999999998885443 2222110
Q ss_pred hcCCCCcccccccccceeeeeecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
. ...-+..|+|++.|-.++.
T Consensus 430 ---~-~~~~~~~GlGL~i~~~~~~ 449 (475)
T PRK11100 430 ---P-ANGRKSTGLGLAFVREVAR 449 (475)
T ss_pred ---C-CCCCCCcchhHHHHHHHHH
Confidence 0 1122456899887665544
No 37
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.78 E-value=0.0032 Score=70.43 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=49.3
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVP--DKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFME 112 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~ 112 (702)
..+..|+.||.++.... ......|.|.. ..+.-.|+|.|||+||+.+...+-|...- +++
T Consensus 390 ~vl~Nl~~NAik~~~~~------------~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~-~~~----- 451 (494)
T TIGR02938 390 SLFKALVDNAIEAMNIK------------GWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFF-TTK----- 451 (494)
T ss_pred HHHHHHHHHHHHHhhcc------------CCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCc-ccC-----
Confidence 47899999999997531 01123455544 33335689999999999988876554321 111
Q ss_pred HHhcCCCCcccccccccceeeeeecc
Q 005321 113 ALQAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 113 ~~~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
....+.-|+|++-+-.+++
T Consensus 452 -------~~~~~G~GlGL~i~~~iv~ 470 (494)
T TIGR02938 452 -------GGSRKHIGMGLSVAQEIVA 470 (494)
T ss_pred -------CCCCCCCcccHHHHHHHHH
Confidence 1114557889876655543
No 38
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.76 E-value=0.0029 Score=70.58 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=48.0
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
++.+||.||..+.. ....+.|++..+.+.-.|+|.|||.||+.+.+...+...-++...
T Consensus 357 ~~~nll~Nai~~~~--------------~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~------- 415 (457)
T TIGR01386 357 AISNLLSNALRHTP--------------DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPA------- 415 (457)
T ss_pred HHHHHHHHHHHcCC--------------CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcc-------
Confidence 57788888877642 112344554444333479999999999999888655443222110
Q ss_pred cCCCCcccccccccceeeeeecc
Q 005321 116 AGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~vad 138 (702)
....-+..|+|++-+--+++
T Consensus 416 ---~~~~~~g~GlGL~i~~~~~~ 435 (457)
T TIGR01386 416 ---RSNSGEGTGLGLAIVRSIME 435 (457)
T ss_pred ---cCCCCCCccccHHHHHHHHH
Confidence 01123568899877655544
No 39
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.70 E-value=0.0042 Score=71.06 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=47.7
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++.+|+.||.+|... .....+.|++..+.+.-.|.|.|||.||+.+++.+.|.. +.|++
T Consensus 436 ~vl~nLl~NAi~~~~~------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~-~~~~~------- 495 (542)
T PRK11086 436 TILGNLIENALEAVGG------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDK-GYSTK------- 495 (542)
T ss_pred HHHHHHHHHHHHHhhc------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhC-CCccC-------
Confidence 3678999999999742 011224444444433356899999999999998865532 22211
Q ss_pred hcCCCCcccccccccceeeeeecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
-+..|+|+.-+-.+++
T Consensus 496 --------~~g~GlGL~iv~~iv~ 511 (542)
T PRK11086 496 --------GSNRGVGLYLVKQSVE 511 (542)
T ss_pred --------CCCCcCcHHHHHHHHH
Confidence 1245889876655543
No 40
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.68 E-value=0.0033 Score=72.07 Aligned_cols=97 Identities=12% Similarity=0.174 Sum_probs=58.9
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
++.-||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+.+++...+..- ..+
T Consensus 382 vl~NLi~NAik~~~----------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f-~~~--------- 435 (485)
T PRK10815 382 VMGNVLDNACKYCL----------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRG-QRA--------- 435 (485)
T ss_pred HHHHHHHHHHHhcC----------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCc-ccC---------
Confidence 67778888887763 1245555554444579999999999999987544321 110
Q ss_pred cCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005321 116 AGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPLGRGTKITLFLKE 185 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 185 (702)
+ ..-+..|+|++-|--+++.. +|.+.+... .+.||++++.++.
T Consensus 436 ---~-~~~~G~GLGL~Ivk~iv~~~------------------gG~i~v~s~-----~~~Gt~f~i~lp~ 478 (485)
T PRK10815 436 ---D-TLRPGQGLGLSVAREITEQY------------------EGKISAGDS-----PLGGARMEVIFGR 478 (485)
T ss_pred ---C-CCCCCcchhHHHHHHHHHHc------------------CCEEEEEEC-----CCCEEEEEEEEcC
Confidence 0 11135799987665554421 223344331 2468888888764
No 41
>PRK10364 sensor protein ZraS; Provisional
Probab=96.66 E-value=0.004 Score=70.25 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=47.0
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
.+..||.||++|+.. ...+.|.+..+.+.-.|.|.|||.||+.+.+.+.|.. +.+++
T Consensus 352 il~NLl~NA~k~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-~~~~k-------- 408 (457)
T PRK10364 352 VLLNLYLNAIQAIGQ--------------HGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTP-YFTTK-------- 408 (457)
T ss_pred HHHHHHHHHHHhcCC--------------CCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCc-cccCC--------
Confidence 577888999998641 1234555555544467999999999999988754432 22211
Q ss_pred cCCCCcccccccccceeeeeecc
Q 005321 116 AGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~vad 138 (702)
-+..|+|++-+-.+++
T Consensus 409 -------~~g~GlGL~iv~~~v~ 424 (457)
T PRK10364 409 -------AEGTGLGLAVVHNIVE 424 (457)
T ss_pred -------CCCCcccHHHHHHHHH
Confidence 1246899876555544
No 42
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.64 E-value=0.0032 Score=73.65 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=86.9
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH----------HHhhhhc
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVN----------NLGTIAR 104 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~----------~l~~Ia~ 104 (702)
-.+.|+|-||+|-... ++. .....|.|.++ ++.|+|.|||.||+-+--.. .+.++..
T Consensus 48 hi~~EIldNavDe~~~-------~~~----g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~Lh 114 (602)
T PHA02569 48 KIIDEIIDNSVDEAIR-------TNF----KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTK 114 (602)
T ss_pred eeeehhhhhhhhhhhc-------cCC----CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeec
Confidence 4568999999996321 110 12357888877 67899999999998643211 1112333
Q ss_pred cCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCc-eEEEEEccCceEEEEeCCCCCCCCCceEEEEEe
Q 005321 105 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDE-QYVWESQAGGSFTVTRDVSGEPLGRGTKITLFL 183 (702)
Q Consensus 105 S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~-~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~l 183 (702)
+|.+ | . +.-.-.-|.-|+|.-.+=+++.+++|+++.++.. ...|.. |. ...+...+....+||+|+...
T Consensus 115 aGgk-F----d-~~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~~~~~q~f~~---G~-~~~~~~~~~~~~~GT~V~F~P 184 (602)
T PHA02569 115 AGSN-F----D-DTNRVTGGMNGVGSSLTNFFSVLFIGETCDGKNEVTVNCSN---GA-ENISWSTKPGKGKGTSVTFIP 184 (602)
T ss_pred cccc-c----C-CcceeeCCcCCccceeeeccchhhheEEEcCCEEEEEEecC---Cc-ccCCcccCCCCCCccEEEEEE
Confidence 3322 2 1 1112346999999998889999999988643211 223321 21 111111123446999999875
Q ss_pred ccch---hhhh--cHHHHHHHHHHhcccCc-cceEEec
Q 005321 184 KEDQ---CEYL--EERRIKDLVKKHSEFIS-YPIYLWT 215 (702)
Q Consensus 184 k~~~---~e~~--~~~~i~~ii~~ys~fl~-~PI~~~~ 215 (702)
.... ..|- ....|.+-++..|-..+ .-|.+++
T Consensus 185 D~~iF~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~d 222 (602)
T PHA02569 185 DFSHFEVNGLDQQYLDIILDRLQTLAVVFPDIKFTFNG 222 (602)
T ss_pred CHHHhCCCccCccHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 5432 1121 12445555555543222 3366653
No 43
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0055 Score=70.41 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=96.7
Q ss_pred chhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhhhhc
Q 005321 33 KEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKAD--------LVNNLGTIAR 104 (702)
Q Consensus 33 ~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d--------l~~~l~~Ia~ 104 (702)
....+.|.|-||.|-.-. ...-.|.|+++ .++.|+|.|||-||+-+- +. .+.|+-+
T Consensus 37 LhHlv~EVvDNsiDEala--------------G~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vE-vI~T~LH 100 (635)
T COG0187 37 LHHLVWEVVDNSIDEALA--------------GYADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVE-VIFTVLH 100 (635)
T ss_pred ceeeEeEeeechHhHHhh--------------CcCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceE-EEEEeec
Confidence 466789999999996421 12347777777 568999999999998654 22 1222223
Q ss_pred cCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceE--EEEEccCceEEEEeCCCCCCCCCceEEEEE
Q 005321 105 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQY--VWESQAGGSFTVTRDVSGEPLGRGTKITLF 182 (702)
Q Consensus 105 S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~--~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~ 182 (702)
.|.+ | ..+.-.-.=|--|||.--+=+++++++|+++..+ .-| .|+ .|...-.+...........||+|+.+
T Consensus 101 AGGK-F----d~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~g-k~y~q~f~-~G~~~~~l~~ig~~~~~~~GT~V~F~ 173 (635)
T COG0187 101 AGGK-F----DNDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDG-KIYRQRFE-RGVPVTPLEVIGSTDTKKTGTKVRFK 173 (635)
T ss_pred cCcc-c----CCCccEeecCCCccceEEEecccceEEEEEEECC-EEEEEEEe-CCCcCCCceecccCCCCCCccEEEEE
Confidence 3221 1 1010112358999999889999999999998653 222 222 12111122221111345789999987
Q ss_pred eccch---hhhhcHHHHHHHHHHhcccCc-cceEEecc
Q 005321 183 LKEDQ---CEYLEERRIKDLVKKHSEFIS-YPIYLWTE 216 (702)
Q Consensus 183 lk~~~---~e~~~~~~i~~ii~~ys~fl~-~PI~~~~~ 216 (702)
-.+.- .+| +...|..-++.++=..+ .-|.++++
T Consensus 174 PD~~iF~~~~f-~~~~l~~RlrelA~L~~gl~I~l~d~ 210 (635)
T COG0187 174 PDPEIFGETEF-DYEILKRRLRELAFLNKGVKITLTDE 210 (635)
T ss_pred cChHhcCCccc-CHHHHHHHHHHHhccCCCCEEEEEec
Confidence 55432 233 66778888887776544 55777654
No 44
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.55 E-value=0.011 Score=74.47 Aligned_cols=164 Identities=17% Similarity=0.257 Sum_probs=92.7
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHhhhhcc
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLV--------NNLGTIARS 105 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~--------~~l~~Ia~S 105 (702)
.-.+.|+|-||.|-..+ ++ .......|.|+++.+.+.|+|.|||.||.-+--. -.|+++-.|
T Consensus 59 ~ki~dEIldNAvDe~~r-------~~---~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aG 128 (1388)
T PTZ00108 59 YKIFDEILVNAADNKAR-------DK---GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTS 128 (1388)
T ss_pred hhhHHHHhhhhhhhhcc-------cC---CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeecc
Confidence 45788999999997531 10 0122457888888877899999999999764211 112333333
Q ss_pred CchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCC-CceE--EEEEccC--ceEEEEeCCCCCCCCCceEEE
Q 005321 106 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHND-DEQY--VWESQAG--GSFTVTRDVSGEPLGRGTKIT 180 (702)
Q Consensus 106 ~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~-~~~~--~w~~~~~--~~~~i~~~~~~~~~~~GT~I~ 180 (702)
|+- ..+.....-|.-|+|.-.+=.++.+++|.++.+. +..| .|+.... ..-.|.. .....+||+|+
T Consensus 129 gkf------dd~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~---~~~~~~GT~Vt 199 (1388)
T PTZ00108 129 SNY------DDTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITS---YDGKKDYTKVT 199 (1388)
T ss_pred ccC------CCCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCC---CCCCCCceEEE
Confidence 321 1111233579999999999999999999998651 2222 4543210 0111211 01116899999
Q ss_pred EEeccchh--hhhcHHH---HHHHHHHhcccCc-cceEEecc
Q 005321 181 LFLKEDQC--EYLEERR---IKDLVKKHSEFIS-YPIYLWTE 216 (702)
Q Consensus 181 L~lk~~~~--e~~~~~~---i~~ii~~ys~fl~-~PI~~~~~ 216 (702)
..-..... .-++.+. |..-++..|-..+ .-|+++++
T Consensus 200 F~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnde 241 (1388)
T PTZ00108 200 FYPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNGE 241 (1388)
T ss_pred EEeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcEEEEeCc
Confidence 86443221 1124444 4444444443332 44666654
No 45
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.53 E-value=0.0073 Score=74.98 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=77.2
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HH-Hhhhhcc
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLV-------NN-LGTIARS 105 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~-l~~Ia~S 105 (702)
.-.+.|+|-||.|-.-. ++ ..-.|.|+++.+++.|+|.|||.||+-+--. .. |+++-.|
T Consensus 54 ~ki~dEIldNAvDe~~~-------~g------~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaG 120 (1135)
T PLN03128 54 YKIFDEILVNAADNKQR-------DP------SMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTS 120 (1135)
T ss_pred HHHHHHHHHHHHHHhhh-------cC------CCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccc
Confidence 34788999999997521 11 2357888888777899999999999864211 11 2222223
Q ss_pred CchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecC-CCceE--EEEEccCceEEEEeCCCCCCCCCceEEEEE
Q 005321 106 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHN-DDEQY--VWESQAGGSFTVTRDVSGEPLGRGTKITLF 182 (702)
Q Consensus 106 ~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~-~~~~~--~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~ 182 (702)
|+ | ..+.-...-|.-|+|.-.+=.++.+++|.++.+ ++..| .|+. |-..-............+||+|+..
T Consensus 121 gk--F----dd~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~-G~~~~~~p~i~~~~~~~~GT~ItF~ 193 (1135)
T PLN03128 121 SN--F----DDNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTN-NMSVKSEPKITSCKASENWTKITFK 193 (1135)
T ss_pred cc--c----CCccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCC-CcccCCCceeccCCCCCCceEEEEE
Confidence 32 1 111112357999999999999999999999732 22222 3432 1000001111111123589999986
Q ss_pred ec
Q 005321 183 LK 184 (702)
Q Consensus 183 lk 184 (702)
-.
T Consensus 194 PD 195 (1135)
T PLN03128 194 PD 195 (1135)
T ss_pred EC
Confidence 44
No 46
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.51 E-value=0.0043 Score=76.11 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=45.6
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
+|..||+||+.+.. .+.+.|++..+.+.-.|+|+|||+||+.+++.+-+...-+.
T Consensus 517 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~---------- 571 (921)
T PRK15347 517 ILVNLLGNAVKFTE---------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQA---------- 571 (921)
T ss_pred HHHHHHHHHhhcCC---------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccC----------
Confidence 67788889887753 12345555444444568999999999999988644321110
Q ss_pred cCCCCcccccccccceeeeeec
Q 005321 116 AGADVSMIGQFGVGFYSAYLVA 137 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~va 137 (702)
+ ...|..|+|+.-|-.++
T Consensus 572 ---~-~~~~g~GLGL~i~~~~~ 589 (921)
T PRK15347 572 ---D-THSQGTGLGLTIASSLA 589 (921)
T ss_pred ---C-CCCCCCchHHHHHHHHH
Confidence 1 12356799986554443
No 47
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.48 E-value=0.0049 Score=75.70 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=51.1
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
++..||+||+.+.. .+.+.|.+..+...-.|.|.|||+||+.+++.+.|...-+.
T Consensus 565 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~---------- 619 (914)
T PRK11466 565 VITNLLSNALRFTD---------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV---------- 619 (914)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcC----------
Confidence 67888899888753 12344554444444569999999999999988654322111
Q ss_pred cCCCCcccccccccceeeeeec----ceEEEEeec
Q 005321 116 AGADVSMIGQFGVGFYSAYLVA----EKVIVTTKH 146 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~va----d~v~V~Sr~ 146 (702)
....|..|+|+.-|-.++ -++.|.|..
T Consensus 620 ----~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~ 650 (914)
T PRK11466 620 ----SGKRGGTGLGLTISSRLAQAMGGELSATSTP 650 (914)
T ss_pred ----CCCCCCCcccHHHHHHHHHHcCCEEEEEecC
Confidence 012367899987654443 345565543
No 48
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.47 E-value=0.0075 Score=69.49 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=49.1
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVP--DKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEA 113 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~ 113 (702)
.+.+||.||++|+.+. ..+...|.|.. +.+.-.|.|.|||.||+.++..+-|.. +.+++.
T Consensus 436 vl~nLl~NAi~~~~~~------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk~----- 497 (545)
T PRK15053 436 IVGNLLDNAFEASLRS------------DEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTRA----- 497 (545)
T ss_pred HHHHHHHHHHHHHhhC------------CCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCCC-----
Confidence 5889999999997531 01123455544 333356899999999999988865432 222211
Q ss_pred HhcCCCCcccccccccceeeeeecc
Q 005321 114 LQAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 114 ~~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
.--|..|+|++-+-.+++
T Consensus 498 -------~~~~g~GlGL~ivk~iv~ 515 (545)
T PRK15053 498 -------DEPGEHGIGLYLIASYVT 515 (545)
T ss_pred -------CCCCCceeCHHHHHHHHH
Confidence 112456999987666654
No 49
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.47 E-value=0.0065 Score=68.08 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=48.7
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++..||+||+.+... ...+.|.+..+.+.-.|+|.|||+||+.+++.+.+...-+..+
T Consensus 320 ~vl~NLl~NAik~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~------- 378 (430)
T PRK11006 320 SAISNLVYNAVNHTPE--------------GTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDK------- 378 (430)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccC-------
Confidence 4688899999988531 1224444444444457999999999999998864432211100
Q ss_pred hcCCCCcccccccccceeeeeecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
......|..|+|++-|-.++.
T Consensus 379 ---~~~~~~~G~GLGL~ivk~iv~ 399 (430)
T PRK11006 379 ---ARSRQTGGSGLGLAIVKHALS 399 (430)
T ss_pred ---CCCCCCCCCchHHHHHHHHHH
Confidence 011223567999976655543
No 50
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.43 E-value=0.0074 Score=67.52 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=47.1
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
++++||+||+.+.. ..+.|++..+.+.-.|+|.|||+||+.+++.+.+...-+ +..
T Consensus 357 ~l~nli~NA~~~~~----------------~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~-~~~------- 412 (461)
T PRK09470 357 ALENIVRNALRYSH----------------TKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYR-VDE------- 412 (461)
T ss_pred HHHHHHHHHHHhCC----------------CcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCcc-CCc-------
Confidence 58889999887642 235666666655567999999999999988764432211 100
Q ss_pred cCCCCcccccccccceeeee
Q 005321 116 AGADVSMIGQFGVGFYSAYL 135 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~ 135 (702)
.....-+.+|+|++-+=.
T Consensus 413 --~~~~~~~g~GlGL~iv~~ 430 (461)
T PRK09470 413 --ARDRESGGTGLGLAIVEN 430 (461)
T ss_pred --ccCCCCCCcchhHHHHHH
Confidence 111234678999865433
No 51
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.39 E-value=0.0079 Score=74.27 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=49.4
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN-KTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
++..||+||+.+.. .+.+.|.+....+. -.|.|.|||+||+.+++.+-|....+.
T Consensus 583 il~nLi~NAik~~~---------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 638 (968)
T TIGR02956 583 VLINLVGNAIKFTD---------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQA--------- 638 (968)
T ss_pred HHHHHHHHHHhhCC---------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhcc---------
Confidence 78899999998753 12356666665555 679999999999999988655432211
Q ss_pred hcCCCCcccccccccceeeeee
Q 005321 115 QAGADVSMIGQFGVGFYSAYLV 136 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~v 136 (702)
......|..|+|++-|-.+
T Consensus 639 ---~~~~~~~g~GLGL~i~~~l 657 (968)
T TIGR02956 639 ---DGRRRSGGTGLGLAISQRL 657 (968)
T ss_pred ---CCCCCCCCccHHHHHHHHH
Confidence 1112336788998755444
No 52
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.37 E-value=0.007 Score=67.42 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=43.9
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
++..||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+.+++.+.+...-+ +.
T Consensus 335 il~NLl~NA~k~~~----------------~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~-~~-------- 389 (435)
T PRK09467 335 ALANLVVNAARYGN----------------GWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTR-GD-------- 389 (435)
T ss_pred HHHHHHHHHHHhCC----------------CeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCccc-CC--------
Confidence 56667777665431 234555544433356999999999999998865443211 10
Q ss_pred cCCCCcccccccccceeeeeecc
Q 005321 116 AGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~vad 138 (702)
.... -+.+|+|++-+-.+++
T Consensus 390 --~~~~-~~g~GlGL~iv~~i~~ 409 (435)
T PRK09467 390 --SARG-SSGTGLGLAIVKRIVD 409 (435)
T ss_pred --CCCC-CCCeehhHHHHHHHHH
Confidence 0111 2568888876544444
No 53
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.30 E-value=0.0091 Score=66.10 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=47.1
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEE--cCCC-CEEEEEeCCCCCCHHHHHHHHhhhhccCchhHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVP--DKAN-KTLSIIDSGVGMTKADLVNNLGTIARSGTKEFM 111 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d~~~-~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~ 111 (702)
-++..||.||+.+... ...|.|.. ..++ -.|+|.|||.||+.+++.+.|...-+.
T Consensus 275 qvl~NLl~NAik~~~~----------------~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~------ 332 (380)
T PRK09303 275 QVLLNLLDNAIKYTPE----------------GGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRL------ 332 (380)
T ss_pred HHHHHHHHHHHhcCCC----------------CceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeC------
Confidence 3678889999887531 23455543 2222 468999999999999888544322111
Q ss_pred HHHhcCCCCcccccccccceeeeeecc
Q 005321 112 EALQAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 112 ~~~~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
......+..|+|++-|..+++
T Consensus 333 ------~~~~~~~G~GLGL~i~~~iv~ 353 (380)
T PRK09303 333 ------PRDEGTEGYGIGLSVCRRIVR 353 (380)
T ss_pred ------CCCCCCCcccccHHHHHHHHH
Confidence 011123568999987766654
No 54
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=96.25 E-value=0.011 Score=66.97 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=48.8
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
+.|.=||.||+||..+ . .+...+.+.+..+.+.-.|.|.|||+||+++... .+...|.|++.
T Consensus 430 tIlGNLidNA~eA~~~------~-----~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~-~iFe~G~Stk~------ 491 (537)
T COG3290 430 TILGNLIDNALEALLA------P-----EENKEIELSLSDRGDELVIEVADTGPGIPPEVRD-KIFEKGVSTKN------ 491 (537)
T ss_pred HHHHHHHHHHHHHhhc------c-----CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHH-HHHhcCccccC------
Confidence 3566799999999863 0 1122334444333333457999999999998887 44455666431
Q ss_pred hcCCCCcccccccccceeeeee
Q 005321 115 QAGADVSMIGQFGVGFYSAYLV 136 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~v 136 (702)
.|.-|+|+|-+=..
T Consensus 492 --------~~~rGiGL~Lvkq~ 505 (537)
T COG3290 492 --------TGGRGIGLYLVKQL 505 (537)
T ss_pred --------CCCCchhHHHHHHH
Confidence 46889998754333
No 55
>PRK10337 sensor protein QseC; Provisional
Probab=96.11 E-value=0.012 Score=65.99 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=45.3
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
+++.||.||+.+.. ....|.|.... ..|+|.|||.||+++++...+...-+.
T Consensus 356 vl~Nli~NA~k~~~----------------~~~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f~~~---------- 407 (449)
T PRK10337 356 LVRNLLDNAIRYSP----------------QGSVVDVTLNA--RNFTVRDNGPGVTPEALARIGERFYRP---------- 407 (449)
T ss_pred HHHHHHHHHHhhCC----------------CCCeEEEEEEe--eEEEEEECCCCCCHHHHHHhcccccCC----------
Confidence 67888888887753 11245554432 379999999999999988654432211
Q ss_pred cCCCCcccccccccceeeeeecc
Q 005321 116 AGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~vad 138 (702)
+..-.+..|+|+.-|-.+++
T Consensus 408 ---~~~~~~g~GlGL~iv~~i~~ 427 (449)
T PRK10337 408 ---PGQEATGSGLGLSIVRRIAK 427 (449)
T ss_pred ---CCCCCCccchHHHHHHHHHH
Confidence 11122458999876555544
No 56
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.08 E-value=0.013 Score=70.24 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=48.9
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++..||.||+.+... ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+...- +++.
T Consensus 600 ~il~NLI~NAik~s~~--------------~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~-t~~~------ 658 (703)
T TIGR03785 600 QMLDKLVDNAREFSPE--------------DGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMV-SVRD------ 658 (703)
T ss_pred HHHHHHHHHHHHHCCC--------------CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCe-ecCC------
Confidence 3577888998887631 123455554444445699999999999999886544322 1110
Q ss_pred hcCCCCcccccccccceeeeeecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
.....-+..|+|++-|-.+++
T Consensus 659 ---~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 659 ---QGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred ---CCCCCCCCccHHHHHHHHHHH
Confidence 011112468999987655554
No 57
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=95.94 E-value=0.013 Score=70.35 Aligned_cols=163 Identities=21% Similarity=0.224 Sum_probs=91.5
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhhhhccC
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLV-------NNLGTIARSG 106 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~l~~Ia~S~ 106 (702)
...+.|+|.||+|-.-. ...-.|.|.++. ++.|+|+|||.||.-+.-. ....++.++|
T Consensus 131 hhLv~EIlDNSVDE~la--------------G~~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAG 195 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLA--------------GECNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSG 195 (903)
T ss_pred eEEEEEEeeccchhhcc--------------CCCcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccC
Confidence 34688999999994321 123467777765 4789999999999864321 1222344444
Q ss_pred chhHHHHH-----------------------------h-----cC-CC-CcccccccccceeeeeecceEEEEeecCCCc
Q 005321 107 TKEFMEAL-----------------------------Q-----AG-AD-VSMIGQFGVGFYSAYLVAEKVIVTTKHNDDE 150 (702)
Q Consensus 107 ~~~f~~~~-----------------------------~-----~~-~~-~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~ 150 (702)
.+ |-... + +. .. ...-|.-|||.-.+=+++.+++|.++..+ .
T Consensus 196 GK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG-K 273 (903)
T PTZ00109 196 GK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG-K 273 (903)
T ss_pred cc-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC-E
Confidence 22 11100 0 00 00 12578999999989999999999998653 2
Q ss_pred eEEEEEccCceEEEEeCC-CCCC-CCCceEEEEEec-cchh-h-h--------------hcHHHHHHHHHHhcccCc-cc
Q 005321 151 QYVWESQAGGSFTVTRDV-SGEP-LGRGTKITLFLK-EDQC-E-Y--------------LEERRIKDLVKKHSEFIS-YP 210 (702)
Q Consensus 151 ~~~w~~~~~~~~~i~~~~-~~~~-~~~GT~I~L~lk-~~~~-e-~--------------~~~~~i~~ii~~ys~fl~-~P 210 (702)
.|.-+... |. .+.+.. .+.. ..+||+|+.... +.-- . . ++.+.|+.-++..|-..+ .-
T Consensus 274 ~y~q~F~r-G~-~v~pLkvig~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNpGL~ 351 (903)
T PTZ00109 274 IYSIELSK-GK-VTKPLSVFSCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNPGLT 351 (903)
T ss_pred EEEEEeCC-Cc-ccCCccccCCcCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHhccCCCcE
Confidence 22222221 21 111110 1122 468999998755 4311 1 0 245667777777774332 33
Q ss_pred eEEec
Q 005321 211 IYLWT 215 (702)
Q Consensus 211 I~~~~ 215 (702)
|.+++
T Consensus 352 I~L~D 356 (903)
T PTZ00109 352 FYLVD 356 (903)
T ss_pred EEEEe
Confidence 66654
No 58
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=95.89 E-value=0.017 Score=60.93 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=46.9
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
++.+||.||+.+... ...+.|.+....+.-.|.|.|||.||+.+.+...+....+. ..
T Consensus 233 vl~nll~Nai~~~~~--------------~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~-~~------- 290 (333)
T TIGR02966 233 AFSNLVSNAIKYTPE--------------GGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRV-DK------- 290 (333)
T ss_pred HHHHHHHHhheeCCC--------------CCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceec-Cc-------
Confidence 788999998877531 12234444444344569999999999999887544322111 00
Q ss_pred cCCCCcccccccccceeeeeecc
Q 005321 116 AGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~vad 138 (702)
......+..|+|++.|-.+++
T Consensus 291 --~~~~~~~g~glGL~~~~~~~~ 311 (333)
T TIGR02966 291 --SRSRDTGGTGLGLAIVKHVLS 311 (333)
T ss_pred --ccccCCCCCcccHHHHHHHHH
Confidence 001122456899987655543
No 59
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.89 E-value=0.016 Score=70.80 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=51.5
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEc---------------CCCCEEEEEeCCCCCCHHHHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPD---------------KANKTLSIIDSGVGMTKADLVNNLG 100 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d---------------~~~~~l~I~DnGiGMt~~dl~~~l~ 100 (702)
.+..||.||+.++.. ...+.|.+... .+.-.|.|.|||+||+.+++.+.|.
T Consensus 564 vl~NLl~NAik~~~~--------------~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe 629 (828)
T PRK13837 564 VLMNLCSNAAQAMDG--------------AGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFE 629 (828)
T ss_pred HHHHHHHHHHHHccc--------------CCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhC
Confidence 688999999998641 12345555443 1123589999999999998875433
Q ss_pred hhhccCchhHHHHHhcCCCCcccccccccceeeeee----cceEEEEeecC
Q 005321 101 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLV----AEKVIVTTKHN 147 (702)
Q Consensus 101 ~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~v----ad~v~V~Sr~~ 147 (702)
.. .++ + . |..|+|++-|-.+ +-++.|.|..+
T Consensus 630 ~F-~~~------------~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 630 PF-FTT------------R-A--GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred Cc-ccC------------C-C--CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 21 110 1 1 6779998766444 35577766543
No 60
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.65 E-value=0.029 Score=52.60 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=29.7
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCC
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMT 91 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt 91 (702)
..++.||++||..+.- . . .....+.|.+....+.-.|.|.|+|.||+
T Consensus 41 ~~~l~eli~Nai~h~~----~---~----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 41 KTAVSEAVTNAIIHGY----E---E----NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHHhcc----C---C----CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 3578999999886521 0 0 01123445554444445689999999997
No 61
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.64 E-value=0.028 Score=69.12 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=50.3
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC---CEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN---KTLSIIDSGVGMTKADLVNNLGTIARSGTKEFME 112 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~---~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~ 112 (702)
++.-||+||..+.. .+.+.|.+...... -.|.|.|||+||+.+++.+-|...-+ .+
T Consensus 569 VL~NLL~NAik~t~---------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t-~~----- 627 (894)
T PRK10618 569 ILLLLLNYAITTTA---------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLN-QT----- 627 (894)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCcccc-CC-----
Confidence 67889999988753 12344444433222 36899999999999998865433221 11
Q ss_pred HHhcCCCCcccccccccceeeeee----cceEEEEeecC
Q 005321 113 ALQAGADVSMIGQFGVGFYSAYLV----AEKVIVTTKHN 147 (702)
Q Consensus 113 ~~~~~~~~~~iG~fGIGf~S~F~v----ad~v~V~Sr~~ 147 (702)
.....-+..|+|+.-|-.+ +-++.|.|..+
T Consensus 628 -----~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g 661 (894)
T PRK10618 628 -----QGDRYGKASGLTFFLCNQLCRKLGGHLTIKSREG 661 (894)
T ss_pred -----CCCCCCCCcChhHHHHHHHHHHcCCEEEEEECCC
Confidence 0111224578888655444 34566665543
No 62
>PRK09835 sensor kinase CusS; Provisional
Probab=95.62 E-value=0.027 Score=63.45 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=35.0
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHh
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLG 100 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~ 100 (702)
.+++.||.||+.+.. ....+.|++..+.+.-.|.|.|||.||+.+++...+.
T Consensus 378 ~vl~nll~Na~~~~~--------------~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~ 429 (482)
T PRK09835 378 RAISNLLSNALRYTP--------------AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFD 429 (482)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhC
Confidence 457777777777642 1123455555454445799999999999999885443
No 63
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.57 E-value=0.014 Score=56.92 Aligned_cols=88 Identities=20% Similarity=0.269 Sum_probs=52.8
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEA 113 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~ 113 (702)
..++.|++.||+....+. .....+.|.+....+.-.|.|+|+|.||+.+.+...+.. ....
T Consensus 44 ~lav~Ea~~Nai~Hg~~~-----------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p---~~~~----- 104 (161)
T PRK04069 44 KIAVSEACTNAVQHAYKE-----------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGP---YDIS----- 104 (161)
T ss_pred HHHHHHHHHHHHHhccCC-----------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCC---CCCC-----
Confidence 468999999999987420 011235566555555567999999999997765532211 0000
Q ss_pred HhcCCCCcccccccccceeeeeecceEEEEe
Q 005321 114 LQAGADVSMIGQFGVGFYSAYLVAEKVIVTT 144 (702)
Q Consensus 114 ~~~~~~~~~iG~fGIGf~S~F~vad~v~V~S 144 (702)
.+...-..-|+|++-+=.++|++.+.+
T Consensus 105 ----~~~~~~~~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 105 ----KPIEDLREGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred ----CcccccCCCceeHHHHHHHHHhEEEEc
Confidence 000111123677776666788877764
No 64
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=95.52 E-value=0.034 Score=63.78 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=34.4
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN-KTLSIIDSGVGMTKADLVNNL 99 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~l 99 (702)
++.+||.||+.+... ...+.|.+..+.++ -.|.|+|||+||+.+.+...+
T Consensus 504 ~~~nli~na~~~~~~--------------~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f 554 (607)
T PRK11360 504 VLLNILINAVQAISA--------------RGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIF 554 (607)
T ss_pred HHHHHHHHHHHHhcC--------------CCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhc
Confidence 577888888877531 12344444444444 679999999999999887543
No 65
>PRK03660 anti-sigma F factor; Provisional
Probab=95.52 E-value=0.045 Score=51.82 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=30.8
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCH
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTK 92 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ 92 (702)
..++.|++.||+...-. . .....+.|++....+.-.++|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~~~-------~----~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHGYE-------N----NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHhcC-------C----CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 45789999999865310 0 001234555555444456899999999974
No 66
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.51 E-value=0.035 Score=67.21 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=55.8
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKA-NKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEA 113 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~ 113 (702)
-++..||.||.++.. .+.+.|.+....+ .-.|+|.|||+||+.+++.+-|...-+. +
T Consensus 401 qvl~NLl~NAik~~~---------------~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~-~------ 458 (779)
T PRK11091 401 QILWNLISNAVKFTQ---------------QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV-K------ 458 (779)
T ss_pred HHHHHHHHHHHHhCC---------------CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc-c------
Confidence 367899999998853 1235566655522 3468999999999999988655433221 0
Q ss_pred HhcCCCCcccccccccceeeeee----cceEEEEeecCC
Q 005321 114 LQAGADVSMIGQFGVGFYSAYLV----AEKVIVTTKHND 148 (702)
Q Consensus 114 ~~~~~~~~~iG~fGIGf~S~F~v----ad~v~V~Sr~~~ 148 (702)
........|.-|+|+.-|-.+ +-++.|.|..+.
T Consensus 459 --~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~ 495 (779)
T PRK11091 459 --DSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGK 495 (779)
T ss_pred --CCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCC
Confidence 001122346678998765444 355777765443
No 67
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.26 E-value=0.025 Score=64.70 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=39.2
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTI 102 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~I 102 (702)
+|-=|||||.||++. ...+.++|+..-+.+.-.|+|+|||.|+..+-+.+.|...
T Consensus 501 VLvNLl~NALDA~~~------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF 555 (603)
T COG4191 501 VLVNLLQNALDAMAG------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPF 555 (603)
T ss_pred HHHHHHHHHHHHhcC------------CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCc
Confidence 566799999999972 1123345555555555679999999999999888665543
No 68
>PRK10490 sensor protein KdpD; Provisional
Probab=95.06 E-value=0.048 Score=67.25 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=47.3
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
-++..||+||+.+... ...+.|.+..+.+.-.|.|.|||.||+.+++.+.|... .++.
T Consensus 781 qVL~NLL~NAik~s~~--------------g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF-~~~~------- 838 (895)
T PRK10490 781 RVLINLLENAVKYAGA--------------QAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKF-ARGN------- 838 (895)
T ss_pred HHHHHHHHHHHHhCCC--------------CCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCC-ccCC-------
Confidence 3678899998887531 12344444444444568999999999999887544322 1111
Q ss_pred hcCCCCcccccccccceeeeeecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
.....+..|+|++-|-.+++
T Consensus 839 ----~~~~~~G~GLGL~Ivk~ive 858 (895)
T PRK10490 839 ----KESAIPGVGLGLAICRAIVE 858 (895)
T ss_pred ----CCCCCCCccHHHHHHHHHHH
Confidence 11123457888876655443
No 69
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=94.80 E-value=0.038 Score=64.43 Aligned_cols=43 Identities=23% Similarity=0.443 Sum_probs=28.8
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKA 93 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 93 (702)
.++|+|+||..+.. ...+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 473 il~ell~NA~kha~---------------a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHAQ---------------ASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 57888888776542 12345555544444578999999999864
No 70
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.75 E-value=0.066 Score=65.69 Aligned_cols=88 Identities=13% Similarity=0.218 Sum_probs=52.5
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcC--CC---CEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDK--AN---KTLSIIDSGVGMTKADLVNNLGTIARSGTKEF 110 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~---~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f 110 (702)
.+..||+||+.+... +.+.|.+.... ++ -.|.|.|||+||+++++.+.|...-+...
T Consensus 412 vl~NLl~NAik~~~~---------------g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--- 473 (919)
T PRK11107 412 IITNLVGNAIKFTES---------------GNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADA--- 473 (919)
T ss_pred HHHHHHHHHhhcCCC---------------CcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCC---
Confidence 678899999887531 23445554322 22 24899999999999998865533221110
Q ss_pred HHHHhcCCCCcccccccccceeeeeec----ceEEEEeecCC
Q 005321 111 MEALQAGADVSMIGQFGVGFYSAYLVA----EKVIVTTKHND 148 (702)
Q Consensus 111 ~~~~~~~~~~~~iG~fGIGf~S~F~va----d~v~V~Sr~~~ 148 (702)
......|..|+|++-|-.++ -++.|.|..+.
T Consensus 474 -------~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~ 508 (919)
T PRK11107 474 -------SISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR 508 (919)
T ss_pred -------CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCC
Confidence 11123467899987554443 45666665443
No 71
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=94.71 E-value=0.06 Score=68.30 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=46.1
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEE---cCCC--CEEEEEeCCCCCCHHHHHHHHhhhhccCchh
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVP---DKAN--KTLSIIDSGVGMTKADLVNNLGTIARSGTKE 109 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~---d~~~--~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~ 109 (702)
-++..||.||+++... +.+.|.+.. +.+. -.|+|.|||+||+.+++.+-|...-+ ++
T Consensus 831 qvl~NLl~NAik~~~~---------------g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~-~~-- 892 (1197)
T PRK09959 831 QVLSNLLSNALKFTTE---------------GAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQ-TS-- 892 (1197)
T ss_pred HHHHHHHHHHHHhCCC---------------CCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccc-cc--
Confidence 3788999999998641 123444432 2222 24799999999999998854432211 11
Q ss_pred HHHHHhcCCCCcccccccccceeeeeec
Q 005321 110 FMEALQAGADVSMIGQFGVGFYSAYLVA 137 (702)
Q Consensus 110 f~~~~~~~~~~~~iG~fGIGf~S~F~va 137 (702)
.....+..|+|++-|-.++
T Consensus 893 ---------~~~~~~G~GLGL~i~~~iv 911 (1197)
T PRK09959 893 ---------AGRQQTGSGLGLMICKELI 911 (1197)
T ss_pred ---------cCCCCCCcCchHHHHHHHH
Confidence 1112346899987665554
No 72
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.55 E-value=0.077 Score=65.73 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=47.8
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
-++.-||+||+.+.. .+.+.|.+..+.+.-.|+|.|||+||+.+++.+.|...-+...
T Consensus 565 qvl~NLl~NAik~t~---------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~------- 622 (924)
T PRK10841 565 QVISNLLSNAIKFTD---------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGT------- 622 (924)
T ss_pred HHHHHHHHHHHhhCC---------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCC-------
Confidence 368889999988753 1234555555443456899999999999998865533221110
Q ss_pred hcCCCCcccccccccceeeeeec
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVA 137 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~va 137 (702)
......+..|+|+.-|-.++
T Consensus 623 ---~~~~~~~GtGLGL~I~k~lv 642 (924)
T PRK10841 623 ---GVQRNFQGTGLGLAICEKLI 642 (924)
T ss_pred ---CCCCCCCCeehhHHHHHHHH
Confidence 01112356789987665443
No 73
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=94.50 E-value=0.058 Score=52.52 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=53.3
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEA 113 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~ 113 (702)
..++.|++.||+...-. ......+.|.+..+.+.-.|.|+|+|.||+...+...+. .....
T Consensus 44 ~lav~Ea~~Nai~ha~~-----------~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~~----- 104 (159)
T TIGR01924 44 KIAVSEACTNAVKHAYK-----------EGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDGS----- 104 (159)
T ss_pred HHHHHHHHHHHHHhccC-----------CCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCCC-----
Confidence 46899999999988631 011233555555555555689999999998776553221 10000
Q ss_pred HhcCCCCcccccccccceeeeeecceEEEEe
Q 005321 114 LQAGADVSMIGQFGVGFYSAYLVAEKVIVTT 144 (702)
Q Consensus 114 ~~~~~~~~~iG~fGIGf~S~F~vad~v~V~S 144 (702)
........-|.|++-+=.++|.+.+.+
T Consensus 105 ----~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 105 ----EPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred ----CCcccCCCCccCHHHHHHhccEEEEEe
Confidence 011111234778887778889888765
No 74
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.28 E-value=0.051 Score=56.43 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=35.1
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNN 98 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~ 98 (702)
..+..||+||.+|+. .+.+.|.+....+.-.|.|.|||.||+++.+...
T Consensus 231 ~vl~nLi~NAi~~~~---------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~i 279 (336)
T COG0642 231 QVLVNLLSNAIKYTP---------------GGEITISVRQDDEQVTISVEDTGPGIPEEELERI 279 (336)
T ss_pred HHHHHHHHHHhccCC---------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHh
Confidence 478999999999983 1234444443333357999999999999996643
No 75
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.26 E-value=0.1 Score=47.98 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=53.5
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEA 113 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~ 113 (702)
..++.|++.||+.....- .....+.|++..+.+.-.|.|.|+|.|++...+.....
T Consensus 33 ~lav~E~~~Nav~H~~~~-----------~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~------------- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYPG-----------DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDP------------- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCCC-----------CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccc-------------
Confidence 468999999999997520 01134556666676667899999999988775542110
Q ss_pred HhcCCCCcccccccccceeeeeecceEEE
Q 005321 114 LQAGADVSMIGQFGVGFYSAYLVAEKVIV 142 (702)
Q Consensus 114 ~~~~~~~~~iG~fGIGf~S~F~vad~v~V 142 (702)
........-|.|++-+=.++|++.+
T Consensus 89 ----~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 ----WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred ----ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0012234456677777777899988
No 76
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.0024 Score=72.59 Aligned_cols=242 Identities=13% Similarity=-0.006 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHh----hCHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceE
Q 005321 391 LVKKCIEMFNEIA----ENKEDYAKFYDAFSKNIKLGIHEDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDI 466 (702)
Q Consensus 391 l~~k~l~~l~~la----~d~~~y~~f~~~~~~~lK~g~~eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~I 466 (702)
|++++.+-|.+.. .+..++.++|+.|-..+..++-+.--....-.... +..........|.+++ .+.+++-..
T Consensus 357 i~k~~rk~l~~k~l~~~~e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~-~a~lLry~ss~s~~~~--~Sl~dYv~r 433 (656)
T KOG0019|consen 357 VLRKLRKVLPQKILEMFQDLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKE-IAKLLRYESSKSGEGA--TSLDDYVER 433 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhH-HHHHhhhhcccccccc--ccHHHHHHh
Confidence 4555555555544 26678999999999988888877766655555555 4333333456788888 556777788
Q ss_pred EEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCCCcchHH--HHhHHHHHHhHH
Q 005321 467 YYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEEDDEE--KKKREEKKKSFE 544 (702)
Q Consensus 467 yY~~~~~~~~~~~sp~~e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~~e~--~~~~e~~~~~~~ 544 (702)
++....+.-.+........-.+-++|++..-++.+.||++.+.+|....++.....++-.- +.+. ....++.+.+..
T Consensus 434 m~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsv-tkEglel~e~ee~~~k~e 512 (656)
T KOG0019|consen 434 MREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSV-TKEGVELPEDDEEKAKDE 512 (656)
T ss_pred hcccccceEEeccchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceecc-chhhccCCccchhHHHHH
Confidence 8888877777777777777788899999999999999999999999888887777765321 1111 111112222222
Q ss_pred HHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhccCCcccccCCCCceEEECCCChHHHHHHhh
Q 005321 545 NLCKTIKEILGDNVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKR 624 (702)
Q Consensus 545 ~L~~~~k~~L~~~V~~V~vS~rL~dsPa~lv~~e~g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~ 624 (702)
....-++ .|- ..++.+|.+ +|+-|+....++.++..++..+--.++.+...|.+++..+.||-|-+.- .+.
T Consensus 513 e~k~efe-~lc-----k~mK~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~--kk~ 583 (656)
T KOG0019|consen 513 ESKKEFE-ELC-----KWMKEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA--KKH 583 (656)
T ss_pred HHHHHHH-HHH-----HHHHHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc--cce
Confidence 2222222 221 124468887 9999988889999999988765433444445677889999999998876 223
Q ss_pred hhcCCCchhHHHHHHHHHHhH
Q 005321 625 AEVDKNDKSVKDLVLLLYETA 645 (702)
Q Consensus 625 ~~~d~~~~~~~~~~~lLyd~A 645 (702)
.+.+++.+.++.+-.+.+...
T Consensus 584 lEINP~hpivk~L~~~~~~dk 604 (656)
T KOG0019|consen 584 LEINPDHPLVKTLRQLRESDK 604 (656)
T ss_pred eeeCCCChHHHHHHHHHhcCc
Confidence 334566788888877666443
No 77
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=93.43 E-value=0.18 Score=54.38 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=32.5
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCC-------C-----CEEEEEeCCCCCCHHHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKA-------N-----KTLSIIDSGVGMTKADLVNN 98 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~-------~-----~~l~I~DnGiGMt~~dl~~~ 98 (702)
.+++.||+||+.|... ....|.|..... + -.|.|.|||.||+.+.....
T Consensus 240 ~vl~nLl~NA~~~~~~---------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~i 300 (348)
T PRK11073 240 QVLLNIVRNALQALGP---------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTL 300 (348)
T ss_pred HHHHHHHHHHHHHhcc---------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhc
Confidence 4688999999999731 123344432111 1 25899999999999877643
No 78
>PRK10547 chemotaxis protein CheA; Provisional
Probab=93.29 E-value=0.34 Score=57.69 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=33.9
Q ss_pred HHHHHHcHHhHhhh----hHhhccCCCCccCCCCCceEEEEEcCC--CCEEEEEeCCCCCCHHHHHH
Q 005321 37 LRELISNSSDALDK----IRFEGLTDKSKLDAQPELFIRIVPDKA--NKTLSIIDSGVGMTKADLVN 97 (702)
Q Consensus 37 lRELIqNA~DA~~k----~r~~~l~~~~~~~~~~~~~I~I~~d~~--~~~l~I~DnGiGMt~~dl~~ 97 (702)
|..||.||+|++-. |+.. +......|.|..... .-.|.|.|+|.||+.+.+..
T Consensus 390 L~hLirNAidHgie~p~~R~~~--------gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAA--------GKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhc--------CCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 56899999999732 1111 111223455554333 34589999999999988764
No 79
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.66 E-value=0.16 Score=52.23 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=32.7
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN--KTLSIIDSGVGMTKA 93 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~~ 93 (702)
++-||++||.-... +. ...+.++|.+..+.++ ..++|.|||.|+..+
T Consensus 126 iv~EL~tNa~Khaf------~~-----~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 126 IVHELVTNALKHAF------LS-----RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHhcC------CC-----CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 78999999998764 11 1233445555555554 479999999998843
No 80
>PRK13557 histidine kinase; Provisional
Probab=92.40 E-value=0.3 Score=55.61 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=33.1
Q ss_pred EEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeee----ecceEEEEeecC
Q 005321 80 TLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYL----VAEKVIVTTKHN 147 (702)
Q Consensus 80 ~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~----vad~v~V~Sr~~ 147 (702)
+|+|.|||.||+.+....-|... .+.+ ...+..|+|++-+-. .+-++.|.|..+
T Consensus 326 ~i~v~D~G~Gi~~~~~~~if~~~-~~~~-------------~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARVMDPF-FTTK-------------EEGKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred EEEEEcCCCCCCHHHHHhccCCC-cccC-------------CCCCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 58999999999999877543321 1110 112467888865432 345677766543
No 81
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=91.54 E-value=0.45 Score=54.95 Aligned_cols=55 Identities=24% Similarity=0.488 Sum_probs=39.0
Q ss_pred HHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCC--EEEEEeCCCCCCHHHHHHHHh
Q 005321 37 LRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANK--TLSIIDSGVGMTKADLVNNLG 100 (702)
Q Consensus 37 lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~--~l~I~DnGiGMt~~dl~~~l~ 100 (702)
+--||+||.+|++.+... ..+...|+++.+..++ .+.|.|||.|++.+++.+.+.
T Consensus 605 f~NliKNA~EAi~~~~~~---------e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 605 FGNLLKNAAEAIEAVEAE---------ERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHhHHHHhhhcccc---------cCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhcc
Confidence 334899999999864321 1122367888776554 479999999999998886543
No 82
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=91.47 E-value=0.68 Score=50.62 Aligned_cols=124 Identities=23% Similarity=0.289 Sum_probs=72.4
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEA 113 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~ 113 (702)
.-.+-||..||..|.=+.... ++ ...+++.|.|....++-+|.|+|-|=|++.+++.+ |..-..|.... -
T Consensus 262 ~ymlfElfKNamrATve~h~~---~~---~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~dr-lf~Y~ySTa~~---~ 331 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHHGD---DG---DELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDR-LFSYMYSTAPA---P 331 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CC---CCCCCeEEEEecCCcceEEEEecCCCCcChhHHHH-HHhhhcccCCC---C
Confidence 346889999999998643211 11 11345667666666678899999999999999985 44445554221 0
Q ss_pred HhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEeccchhhh
Q 005321 114 LQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPLGRGTKITLFLKEDQCEY 190 (702)
Q Consensus 114 ~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~~~~e~ 190 (702)
........+..-||.|+--+=.+|.-. +|...+.. -.+.||-+.++||.-..+.
T Consensus 332 ~~d~~~~~plaGfG~GLPisrlYa~yf------------------~Gdl~L~S-----leG~GTD~yI~Lk~ls~~~ 385 (414)
T KOG0787|consen 332 SSDNNRTAPLAGFGFGLPISRLYARYF------------------GGDLKLQS-----LEGIGTDVYIYLKALSMEA 385 (414)
T ss_pred CCCCCCcCcccccccCCcHHHHHHHHh------------------CCCeeEEe-----eeccccceEEEeccCCccc
Confidence 000111346667777763222222211 11222222 1368999999999765443
No 83
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=89.62 E-value=1.1 Score=43.29 Aligned_cols=87 Identities=24% Similarity=0.340 Sum_probs=53.7
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEA 113 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~ 113 (702)
.+++-|++.||+.+.-+. +| +...+.|.+..+.+.-.++|.|.|.|+. ++...++.- +..
T Consensus 42 ~~av~E~~~N~v~Ha~~~------~~----~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~--~~~------ 101 (146)
T COG2172 42 AIAVSEALTNAVKHAYKL------DP----SEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG--DTT------ 101 (146)
T ss_pred HHHHHHHHHHHHHHHhhc------CC----CCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC--CCC------
Confidence 579999999999987430 11 1234566666676677899999997765 555433321 100
Q ss_pred HhcCCCCcccccccccceeeeeecceEEEEeec
Q 005321 114 LQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKH 146 (702)
Q Consensus 114 ~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~ 146 (702)
.+... .-|.||+-+=.+.|+|.+....
T Consensus 102 ----~~~~~--~~G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 102 ----AEGLQ--EGGLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred ----Ccccc--cccccHHHHhhhheeEEEEecc
Confidence 01111 2266777666688988887543
No 84
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=89.62 E-value=0.62 Score=54.02 Aligned_cols=69 Identities=20% Similarity=0.295 Sum_probs=42.7
Q ss_pred ceEEEEEc--CCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeec----ceEE
Q 005321 68 LFIRIVPD--KANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVA----EKVI 141 (702)
Q Consensus 68 ~~I~I~~d--~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~va----d~v~ 141 (702)
..|.|..+ ++..++.|.|||+|++.+-+.+-|.-.-+-++ .....| -|+|+.-|-.++ -++-
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s-----------~~~y~g-tG~GL~I~kkI~e~H~G~i~ 724 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHS-----------RDEYLG-TGLGLAICKKIAERHQGRIW 724 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcCc-----------hhhhcC-CCccHHHHHHHHHHhCceEE
Confidence 45666643 34578999999999999988865543222111 223345 899987665554 3455
Q ss_pred EEeecCC
Q 005321 142 VTTKHND 148 (702)
Q Consensus 142 V~Sr~~~ 148 (702)
|.|+.++
T Consensus 725 vEs~~gE 731 (750)
T COG4251 725 VESTPGE 731 (750)
T ss_pred EeecCCC
Confidence 6665443
No 85
>PRK13560 hypothetical protein; Provisional
Probab=89.23 E-value=0.41 Score=57.52 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=30.4
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCC--C-CEEEEEeCCCCCCHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKA--N-KTLSIIDSGVGMTKA 93 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~--~-~~l~I~DnGiGMt~~ 93 (702)
.+.+||+||+.+... ......|.|..... + -.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999987531 11224555554332 2 368999999999875
No 86
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=89.17 E-value=0.32 Score=55.99 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=28.1
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKA 93 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 93 (702)
.+.|++.||..+.. ...+.|++..+.+.-.|+|+|||.||+.+
T Consensus 414 il~nlL~NAiKha~---------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD---------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 56788888877642 12244444444433569999999999843
No 87
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=88.78 E-value=1.4 Score=52.83 Aligned_cols=128 Identities=23% Similarity=0.252 Sum_probs=74.2
Q ss_pred HHHHHHHcHHhHhh----hhHhhccCCCCccCCCCCceEEEEEcCCCC--EEEEEeCCCCCCHHHHHHHHhhhhccCchh
Q 005321 36 FLRELISNSSDALD----KIRFEGLTDKSKLDAQPELFIRIVPDKANK--TLSIIDSGVGMTKADLVNNLGTIARSGTKE 109 (702)
Q Consensus 36 ~lRELIqNA~DA~~----k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~--~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~ 109 (702)
.|.=||=||+|.+= .|+. .+..+.+.|.+.....++ .|.|+|+|.||+.+-+.+.-..=|--+...
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a--------~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~ 507 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRA--------AGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEE 507 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHH--------cCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHH
Confidence 46678999999983 3332 234456788888654443 479999999999998876322111111000
Q ss_pred HHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCc-eE--EEEEccCceEEEEeCCCCCCCCCceEEEEEec
Q 005321 110 FMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDE-QY--VWESQAGGSFTVTRDVSGEPLGRGTKITLFLK 184 (702)
Q Consensus 110 f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~-~~--~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk 184 (702)
.+.+ ++ .-+.++ =|.+.|.=+++|+=.|..+=+. .+ ..+ .=+|...|.. ..+.||+++|.|-
T Consensus 508 -a~~l---Sd-~Ei~~L--IF~PGFSTa~~VtdvSGRGVGMDVVk~~I~-~LgG~I~V~S-----~~G~GT~Fti~LP 572 (716)
T COG0643 508 -AETL---SD-EEILNL--IFAPGFSTAEQVTDVSGRGVGMDVVKTNIE-QLGGSISVSS-----EPGKGTTFTIRLP 572 (716)
T ss_pred -hccC---CH-HHHHHH--HhcCCCCcchhhhcccCCccCHHHHHHHHH-HcCCEEEEEe-----cCCCCeEEEEecC
Confidence 0001 01 112233 4778888888887666543111 11 011 1146667765 3589999999876
No 88
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=87.26 E-value=1.9 Score=51.59 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=40.5
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARS 105 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S 105 (702)
+|-=||.||.-.. ++...++|.+..+.+.-.+.|.|||-|++.+++.+-|-...+.
T Consensus 779 VLiNLleNA~Kya--------------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~ 834 (890)
T COG2205 779 VLINLLENALKYA--------------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRG 834 (890)
T ss_pred HHHHHHHHHHhhC--------------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcC
Confidence 5556888887553 2234466666667666779999999999999999877665543
No 89
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=86.15 E-value=0.61 Score=51.29 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=35.0
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADL 95 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl 95 (702)
-+++|.|.||.-.... ..+.|.+..+.+.-+|+|.|||.|.+.+..
T Consensus 282 rivQEaltN~~rHa~A---------------~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 282 RIVQEALTNAIRHAQA---------------TEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHHHHHhccCC---------------ceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 4799999999877541 346677776666678999999999986644
No 90
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=86.05 E-value=1.4 Score=49.47 Aligned_cols=55 Identities=25% Similarity=0.264 Sum_probs=39.3
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCC---CCEEEEEeCCCCCCHHHHHHHHhhhhccC
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKA---NKTLSIIDSGVGMTKADLVNNLGTIARSG 106 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~ 106 (702)
++--||-||+|||.. ..+.|.+..+.. .-.|-|.|||-|-..+-+. .|.+--+++
T Consensus 568 VlvNl~~NaldA~~h---------------~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~d-kLl~PFtts 625 (673)
T COG4192 568 VLVNLIVNALDASTH---------------FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVD-KLLTPFTTS 625 (673)
T ss_pred HHHHHHHHHHhhhcc---------------CCceEEEEeecCcccceEEEEecCCCCCchhHHH-HhcCCcccc
Confidence 667799999999972 125777776542 3579999999999877666 455544443
No 91
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=85.13 E-value=1 Score=51.48 Aligned_cols=43 Identities=28% Similarity=0.500 Sum_probs=31.5
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKA 93 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 93 (702)
.+||-++||.-.-. ...+.|.+....+.-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa~---------------As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHAQ---------------ASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhcc---------------cCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 68999999986642 12355666555555789999999999844
No 92
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=79.18 E-value=5.4 Score=45.49 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=39.2
Q ss_pred CCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHH
Q 005321 30 YSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN--KTLSIIDSGVGMTKADLV 96 (702)
Q Consensus 30 Ys~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~~dl~ 96 (702)
+-+|-..|-=||.||.-|+-+. ..+.+.|.|.....+ -.+.|.|||+||++.-+.
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~------------~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~ 404 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEP------------KRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLE 404 (456)
T ss_pred ccCchHHHhHHHHHHHHHhccc------------CCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHH
Confidence 3457778888999999998531 123456666654333 457999999999988766
No 93
>PRK13559 hypothetical protein; Provisional
Probab=78.87 E-value=1.8 Score=46.91 Aligned_cols=44 Identities=16% Similarity=0.024 Sum_probs=28.2
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEE--cCCC--CEEEEEeCCCCCCH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVP--DKAN--KTLSIIDSGVGMTK 92 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d~~~--~~l~I~DnGiGMt~ 92 (702)
++.|||.||+.+... + .....|+|.+ ...+ -.|.|.|||.|+..
T Consensus 271 vl~nLi~NA~k~~~~------~-------~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 271 VLHELAVNAIKHGAL------S-------ADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHhHHHhccc------c-------CCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 788999999887431 0 1124555554 3323 46888999999654
No 94
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=76.11 E-value=2.8 Score=48.47 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=26.8
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN-KTLSIIDSGVGMTK 92 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~ 92 (702)
++.+|+.||+.+.. ...+.|.+....++ -.|.|.|||+||+.
T Consensus 475 v~~nll~NA~k~~~---------------~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 475 IIREATLNAIKHAN---------------ASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHhcCC---------------CCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 57888888776532 11244444444223 45899999999985
No 95
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=75.82 E-value=4.2 Score=44.44 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=36.4
Q ss_pred ceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccce
Q 005321 68 LFIRIVPDKAN--KTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFY 131 (702)
Q Consensus 68 ~~I~I~~d~~~--~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~ 131 (702)
.+|.+.+...+ -.|+|.|+|.|++++|+.+-|-+.-+-.+ +.....|--|.|++
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk----------ARsR~~gGTGLGLa 417 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK----------ARSRKMGGTGLGLA 417 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh----------hhhhcCCCCchhHH
Confidence 46666654433 45899999999999999987765543221 12235677888874
No 96
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=69.13 E-value=4.2 Score=48.87 Aligned_cols=92 Identities=26% Similarity=0.291 Sum_probs=55.6
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEE-----EEeCCCCCCHHHHHHHHhhhhccCchh
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLS-----IIDSGVGMTKADLVNNLGTIARSGTKE 109 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~-----I~DnGiGMt~~dl~~~l~~Ia~S~~~~ 109 (702)
-++-|||-||+|-+..+.-. +. -..|....|-.-.-++ |.|||.||..+-+..++.... |.+.+
T Consensus 149 ~a~aeLldnalDEi~~~~tf-~~---------vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~-~~k~e 217 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGATF-VR---------VDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGY-SSKKE 217 (775)
T ss_pred Chhhhhccccccccccccce-EE---------eeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhh-hhhhh
Confidence 47889999999998643211 00 0011111111001122 678999999999987776443 33221
Q ss_pred HHHHHhcCCCCcccccccccceee-eeecceEEEEeec
Q 005321 110 FMEALQAGADVSMIGQFGVGFYSA-YLVAEKVIVTTKH 146 (702)
Q Consensus 110 f~~~~~~~~~~~~iG~fGIGf~S~-F~vad~v~V~Sr~ 146 (702)
-...+||.|.||.++ .-++..+.|.+|.
T Consensus 218 ---------~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 218 ---------ANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred ---------hhhhhhhhccccccchhhhccceeEeehh
Confidence 135689999999855 4567778888883
No 97
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=68.85 E-value=8.3 Score=46.33 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=72.3
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHhhhhcc
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLV--------NNLGTIARS 105 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~--------~~l~~Ia~S 105 (702)
.-..-|.+-||.| -. | |+ ..-.|.++++++.+.|.|.+||-|+.-+... --|+..-+|
T Consensus 55 ~ki~dEilvNaad-k~--r-----d~------~m~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Llts 120 (842)
T KOG0355|consen 55 YKIFDEILVNAAD-KQ--R-----DP------KMNTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTS 120 (842)
T ss_pred HHHHHHHhhcccc-cc--c-----CC------CcceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhc
Confidence 3466799999999 32 1 22 2347888899999999999999999754321 124444455
Q ss_pred CchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecC-C--CceEEEEEccC---ceEEEEeCCCCCCCCCceEE
Q 005321 106 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHN-D--DEQYVWESQAG---GSFTVTRDVSGEPLGRGTKI 179 (702)
Q Consensus 106 ~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~-~--~~~~~w~~~~~---~~~~i~~~~~~~~~~~GT~I 179 (702)
+.- ......-.-|+-|.|-.-|=.++-+..|.|... . .....|...-. +.+-+.. ..+.+|+|
T Consensus 121 sny------~d~ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~-----~~~~yTki 189 (842)
T KOG0355|consen 121 SNY------DDDEKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPS-----TDEDYTKI 189 (842)
T ss_pred ccc------CCCccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecC-----CCCCcceE
Confidence 421 111112244677777666666666777776532 1 12345765422 2222221 12349999
Q ss_pred EEE
Q 005321 180 TLF 182 (702)
Q Consensus 180 ~L~ 182 (702)
++.
T Consensus 190 tF~ 192 (842)
T KOG0355|consen 190 TFS 192 (842)
T ss_pred EeC
Confidence 885
No 98
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=49.99 E-value=22 Score=32.65 Aligned_cols=89 Identities=15% Similarity=0.279 Sum_probs=47.1
Q ss_pred cccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccceEEEecccccccc---------ccccccc--c-ccceee
Q 005321 295 WEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMDN---------CEELIPE--Y-LGFVKG 362 (702)
Q Consensus 295 ~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d~---------~~~llP~--~-l~Fv~g 362 (702)
+..-|..+.... +++.++|++.-|... +..+..+.+|||+++|.+. ..+.+|. | ..++.=
T Consensus 9 ~~~~l~~i~~~~-~~~~i~G~is~p~~~-------~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~i 80 (119)
T PF01119_consen 9 FASNLIEIDSED-EDFSIEGYISKPDVS-------RSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLFI 80 (119)
T ss_dssp HHCCEEEEEEEE-CCEEEEEEEE-SSCS-------BSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEEE
T ss_pred HHhccEEEeccC-CCEEEEEEEECchhc-------cCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEEE
Confidence 344565555333 348888977777533 3346789999999999876 1234553 1 333333
Q ss_pred eecCCCCCCccc---hhhh--ccchHHHHHHHHH
Q 005321 363 VVDSDDLPLNIS---RETL--QQNKILKVIRKNL 391 (702)
Q Consensus 363 vVDs~dLplnvS---RE~l--q~~~~l~~i~~~l 391 (702)
-++.+.+-.||. ||.. .++.++..|++.|
T Consensus 81 ~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i 114 (119)
T PF01119_consen 81 EIPPSEVDVNVHPAKREVRFRDEDEILNLIEEAI 114 (119)
T ss_dssp E-SGGGEEETSSTTTT-EEETTHHHHHHHHHHHH
T ss_pred EcchHHccccccccceEEEecCHHHHHHHHHHHH
Confidence 455555555654 4433 2334444544444
No 99
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=48.93 E-value=14 Score=44.65 Aligned_cols=52 Identities=25% Similarity=0.484 Sum_probs=33.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceee-eeecceEEEEeecC
Q 005321 81 LSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSA-YLVAEKVIVTTKHN 147 (702)
Q Consensus 81 l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~-F~vad~v~V~Sr~~ 147 (702)
++..|+|+||+.+++...+-- ......||++|=|+.|. +-.+..+.+.|+..
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~f---------------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~ 54 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAINF---------------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKE 54 (775)
T ss_pred cccccCCCCcCchhhhhhhhh---------------cccccccccccCcccccccccCcccceeeccc
Confidence 578899999999998853321 12345677777776653 55565566666543
No 100
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=47.57 E-value=40 Score=31.45 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=54.4
Q ss_pred ccccceeeeecc---ceeEEEEEEEeeCCCCCCchhhhhcccceEEEecccccccc---------ccccccc---cccce
Q 005321 296 EDHLAVKHFSVE---GQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMDN---------CEELIPE---YLGFV 360 (702)
Q Consensus 296 ~~pl~~~h~~~e---g~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d~---------~~~llP~---~l~Fv 360 (702)
.+.|..+....+ +.++++|++--|... ..+..+.+|||+++|.+. ..++||. ...|+
T Consensus 15 ~~~li~i~~~~~~~~~~~~i~G~is~p~~~--------~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l~~~~~P~~~L 86 (127)
T cd03483 15 ANELIEVEISDDDDDLGFKVKGLISNANYS--------KKKIIFILFINNRLVECSALRRAIENVYANYLPKGAHPFVYL 86 (127)
T ss_pred HhcceEEecccCCcCCcEEEEEEEcCchhc--------CCCceEEEEEcCCEecCHHHHHHHHHHHHHhCcCCCccEEEE
Confidence 344444443332 458888877666543 125679999999999875 2345665 23445
Q ss_pred eeeecCCCCCCccc---hhhhccc--hHHHHHHHHHHH
Q 005321 361 KGVVDSDDLPLNIS---RETLQQN--KILKVIRKNLVK 393 (702)
Q Consensus 361 ~gvVDs~dLplnvS---RE~lq~~--~~l~~i~~~l~~ 393 (702)
.=-||.+.+=.||. ||..-.+ .++..|++.|.+
T Consensus 87 ~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~ 124 (127)
T cd03483 87 SLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVED 124 (127)
T ss_pred EEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHH
Confidence 55678888888886 5544333 444555544433
No 101
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=47.19 E-value=27 Score=32.47 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=44.4
Q ss_pred CcccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccceEEEecccccccc---------ccccccc---ccccee
Q 005321 294 DWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMDN---------CEELIPE---YLGFVK 361 (702)
Q Consensus 294 ~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d~---------~~~llP~---~l~Fv~ 361 (702)
+..+.|..+.. ..+.+.++|++.-|... +..+..+.+|||+++|.+. ...++|. ...|+.
T Consensus 12 ~~~~~li~i~~-~~~~~~i~G~is~p~~~-------r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~~~~~P~~vL~ 83 (123)
T cd03482 12 DFAEQALAIDE-EAGGLRLSGWIALPTFA-------RSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGGRHPAYVLY 83 (123)
T ss_pred HHHhccceEec-cCCCEEEEEEEeCchhc-------cCCCCcEEEEEcCcEECChHHHHHHHHHHHHhccCCCCcEEEEE
Confidence 33344433332 23458899988777643 3346789999999999875 2344554 234444
Q ss_pred eeecCCCCCCccc
Q 005321 362 GVVDSDDLPLNIS 374 (702)
Q Consensus 362 gvVDs~dLplnvS 374 (702)
--||.+.+-.||.
T Consensus 84 l~ipp~~vDvNVh 96 (123)
T cd03482 84 LELDPAQVDVNVH 96 (123)
T ss_pred EEcChHheeeccC
Confidence 4566666666763
No 102
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=47.07 E-value=21 Score=34.34 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=25.3
Q ss_pred EECCCChHHHHHHhhhhcCCCchh---------HHHHHHHHHHhHH
Q 005321 610 EINPDNGIMEELRKRAEVDKNDKS---------VKDLVLLLYETAL 646 (702)
Q Consensus 610 EINp~HPLIk~L~~~~~~d~~~~~---------~~~~~~lLyd~Al 646 (702)
+.+|+||||++|..+...+-.++. +=.+|+..||.=+
T Consensus 17 ~d~p~~plv~~~~~L~q~Nms~~~y~~a~r~YLVFL~Aq~~Yd~yv 62 (147)
T PF06112_consen 17 ADYPNHPLVAKLQALPQNNMSDAEYREAQRNYLVFLIAQHCYDQYV 62 (147)
T ss_pred ccCCCCHHHHHHHhhccCCCCHHHHHHhhhchhhhhhHHHHHHHHH
Confidence 589999999999998876533332 2345666666533
No 103
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=46.30 E-value=43 Score=32.20 Aligned_cols=58 Identities=12% Similarity=0.219 Sum_probs=45.4
Q ss_pred ChHHHHHHhhhhcCCCchhHHHHHHHHHHh----HHHhCCC-CCCCHHHHHHHHHHHHHhcCCCCc
Q 005321 615 NGIMEELRKRAEVDKNDKSVKDLVLLLYET----ALLTSGF-SLDDPNTFAARIHRMLKLGLSIEE 675 (702)
Q Consensus 615 HPLIk~L~~~~~~d~~~~~~~~~~~lLyd~----All~~G~-~i~d~~~f~~ri~~ll~~~l~~~~ 675 (702)
||.|+.+.++.+. ++.+..++.++|++ +-=.+.. .|.|=..|..-++.+|..+-....
T Consensus 2 ~p~vqefk~lIe~---dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~~~~ 64 (141)
T PF12588_consen 2 HPVVQEFKDLIES---DPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPEFSD 64 (141)
T ss_pred ChHHHHHHHHHhc---CHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhCCcccc
Confidence 8999999999975 47899999999999 2222223 578999999999999987655543
No 104
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=45.02 E-value=27 Score=40.00 Aligned_cols=83 Identities=24% Similarity=0.375 Sum_probs=51.4
Q ss_pred chhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCC---CCCCHHHHHHHHhhhhccCchh
Q 005321 33 KEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSG---VGMTKADLVNNLGTIARSGTKE 109 (702)
Q Consensus 33 ~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG---iGMt~~dl~~~l~~Ia~S~~~~ 109 (702)
|..+|||+|.||+=.-+ |. .. ...+.|.| . ..+|.|.-.| .||+.+++.+. +|-.+.
T Consensus 271 P~~alREai~NAv~HRD---Ys---~~-----~~~v~I~i--y--dDRieI~NPGgl~~gi~~~~l~~~-----~s~~RN 330 (467)
T COG2865 271 PLEALREAIINAVIHRD---YS---IR-----GRNVHIEI--Y--DDRIEITNPGGLPPGITPEDLLKG-----RSKSRN 330 (467)
T ss_pred CHHHHHHHHHHHHHhhc---cc---cC-----CCceEEEE--E--CCeEEEECCCCCCCCCChhHcccC-----CCcccC
Confidence 78899999999985533 21 11 12344444 3 4679999877 58999988753 343322
Q ss_pred -HHHHHhcCCCCcccccccccceeeeeec
Q 005321 110 -FMEALQAGADVSMIGQFGVGFYSAYLVA 137 (702)
Q Consensus 110 -f~~~~~~~~~~~~iG~fGIGf~S~F~va 137 (702)
.+.++- .+..+|-+.|.|+-=.|-.+
T Consensus 331 p~LA~~l--~~~~liE~~GSGi~rm~~~~ 357 (467)
T COG2865 331 PVLAKVL--RDMGLIEERGSGIRRMFDLM 357 (467)
T ss_pred HHHHHHH--HHhhhHHHhCccHHHHHHHH
Confidence 111111 35678899999986554443
No 105
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=39.94 E-value=36 Score=37.19 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=33.9
Q ss_pred chhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEc--CCCCEEEEEeCCCCCCHHHHH
Q 005321 33 KEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPD--KANKTLSIIDSGVGMTKADLV 96 (702)
Q Consensus 33 ~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d--~~~~~l~I~DnGiGMt~~dl~ 96 (702)
+.+++.-.+|-|+-.+++- ....+|.|.+. .+.-+++|+|||.|++..++.
T Consensus 356 ~~talyRv~QEaltNIErH-------------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 356 VATALYRVVQEALTNIERH-------------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred HHHHHHHHHHHHHHHHHhh-------------cCCeEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 4556777788887777641 12345666553 334579999999999866554
No 106
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=39.43 E-value=34 Score=37.82 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=18.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCC
Q 005321 67 ELFIRIVPDKANKTLSIIDSGVGMT 91 (702)
Q Consensus 67 ~~~I~I~~d~~~~~l~I~DnGiGMt 91 (702)
.+.|.+..+.+.-.+.|.|||+|+.
T Consensus 430 ~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 430 AVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred eEEEEEeeCCcEEEEEEecCCcCCC
Confidence 3556666655446789999999986
No 107
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=38.48 E-value=50 Score=31.39 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=29.0
Q ss_pred CcccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccceEEEeccccccc
Q 005321 294 DWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMD 347 (702)
Q Consensus 294 ~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d 347 (702)
.....|..+.... +.+.++|++.-|.+. .+..+.+|||+++|.+
T Consensus 13 ~~~~~l~~v~~~~-~~~~v~G~is~p~~~---------sk~~q~ifVN~R~v~~ 56 (141)
T cd03486 13 VLAQKLKEVSAKF-QEYEVSGYISSEGHY---------SKSFQFIYVNGRLYLK 56 (141)
T ss_pred hhhccEEEeeccc-CcEEEEEEEcCCCCC---------CCceEEEEECCEEech
Confidence 3334444444333 348899988777632 3677899999999865
No 108
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.60 E-value=2.8e+02 Score=33.98 Aligned_cols=87 Identities=20% Similarity=0.149 Sum_probs=56.8
Q ss_pred hhcceecCCCCcccCHHHHHHhhc--cCCceEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHHhhhccCc
Q 005321 437 LLRFHSTKSGDEMTSLKDYVTRMK--EGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGK 514 (702)
Q Consensus 437 lLrf~ts~~~~~~~SL~eYv~rm~--~~Q~~IyY~~~~~~~~~~~sp~~e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~ 514 (702)
.+-|-...|-+|+||+.-...+.. .+.+.|.+++.+.++.......-......|+.|....+|-+ +...+.++.++
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~--l~~al~~~~~~ 264 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD--LRFALAALGDK 264 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHH--HHHHHHHhcCC
Confidence 444444445578999998877764 33468999998876643322222223346777766555433 45667788888
Q ss_pred ceEeecccCCC
Q 005321 515 KLVSATKEGLK 525 (702)
Q Consensus 515 ~~~~v~~~~l~ 525 (702)
.++=|+..|..
T Consensus 265 D~VLIDTAGRs 275 (767)
T PRK14723 265 HLVLIDTVGMS 275 (767)
T ss_pred CEEEEeCCCCC
Confidence 89999999864
No 109
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=35.41 E-value=56 Score=30.62 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=51.6
Q ss_pred ccccceeeeecc-ceeEEEEEEEeeCCCCCCchhhhhcccceEEEeccccccc-c---------ccccc---cc---ccc
Q 005321 296 EDHLAVKHFSVE-GQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMD-N---------CEELI---PE---YLG 358 (702)
Q Consensus 296 ~~pl~~~h~~~e-g~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d-~---------~~~ll---P~---~l~ 358 (702)
.+-|..+....+ +.+.++|++--|.... .+..+..+.+|||+++|.+ . ...++ |. ...
T Consensus 15 ~~~li~i~~~~~~~~~~i~G~is~p~~~~-----~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~~~~~~~~~~~P~~ 89 (132)
T cd03485 15 AANMVPVQSTDEDPQISLEGFLPKPGSDV-----SKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYRKSSLRRYPVF 89 (132)
T ss_pred HhccEEEeccCCCCcEEEEEEECCCCcCC-----CcccCCcEEEEECCeecccchHHHHHHHHHHHHHhccccccCCCEE
Confidence 334544444442 4588888776663220 0234678999999999987 3 12344 31 334
Q ss_pred ceeeeecCCCCCCccc---hhhhc--cchHHHHHHHHH
Q 005321 359 FVKGVVDSDDLPLNIS---RETLQ--QNKILKVIRKNL 391 (702)
Q Consensus 359 Fv~gvVDs~dLplnvS---RE~lq--~~~~l~~i~~~l 391 (702)
|+.--+|...+=.||+ ||.+- ++.++..|++.+
T Consensus 90 ~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v 127 (132)
T cd03485 90 FLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLL 127 (132)
T ss_pred EEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHH
Confidence 4555567777777775 44433 334555555443
No 110
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=34.94 E-value=53 Score=31.31 Aligned_cols=62 Identities=6% Similarity=0.070 Sum_probs=37.3
Q ss_pred ceeEEEEEEEeeCCCCCCchhhhhcccceEEEeccccccccc---------cccccc--cccceeeeecCCCCCCccc
Q 005321 308 GQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMDNC---------EELIPE--YLGFVKGVVDSDDLPLNIS 374 (702)
Q Consensus 308 g~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d~~---------~~llP~--~l~Fv~gvVDs~dLplnvS 374 (702)
+.+.++|++--|... . .+..+..+.+|||+++|.+.. ..+++. +..|+.--|+.+.+-.||.
T Consensus 43 ~~~~i~G~is~p~~~---~--~r~~~~~q~~fVN~R~V~~~~l~~aI~~~y~~~~~~~~P~~vL~i~vp~~~vDvNVh 115 (142)
T cd03484 43 SEVKITGYISKPSHG---C--GRSSSDRQFFYINGRPVDLKKVAKLINEVYKSFNSRQYPFFILNISLPTSLYDVNVT 115 (142)
T ss_pred CcEEEEEEECCCccc---C--CCCCCCcEEEEECCeecCCHHHHHHHHHHHHHhcCcCCcEEEEEEEeCCcceeeeeC
Confidence 457888877656221 1 123457799999999998741 122221 3444555667776767764
No 111
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.11 E-value=1.9e+02 Score=28.11 Aligned_cols=81 Identities=21% Similarity=0.167 Sum_probs=46.7
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchh-HHHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKE-FMEAL 114 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~-f~~~~ 114 (702)
...|||.||+-.-+ ..++.|+.......-.+.+..---+-|..++++.|..|--..-.+ .++.+
T Consensus 67 l~NELiENAVKfra---------------~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll~~it~gDP~dLlieRi 131 (184)
T COG5381 67 LANELIENAVKFRA---------------TGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLLKVITEGDPLDLLIERI 131 (184)
T ss_pred HHHHHHHhhhcccC---------------CCcEEEEEEeccceEEEEecccCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 56799999986543 124555555555445566666666778888887766554433333 44555
Q ss_pred hcCCCCcccccccccce
Q 005321 115 QAGADVSMIGQFGVGFY 131 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~ 131 (702)
..++-..--..=|+|++
T Consensus 132 EanA~~~d~~gSglGLL 148 (184)
T COG5381 132 EANALESDCEGSGLGLL 148 (184)
T ss_pred HhhccCCCCccccccce
Confidence 43221112234467764
No 112
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=30.41 E-value=90 Score=33.97 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=31.1
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC----CEEEEEeCCCCCCHHHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN----KTLSIIDSGVGMTKADLV 96 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~----~~l~I~DnGiGMt~~dl~ 96 (702)
++--|+.||..|+.-+-- +..... -...+-+++++.... -.|.|.|||.|+..+=..
T Consensus 245 v~LNlVrNAaqA~~~~~~---~~g~I~-LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~ 305 (363)
T COG3852 245 VFLNLVRNAAQALGGRAD---EGGEII-LRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQD 305 (363)
T ss_pred HHHHHHHHHHHHhcCCCC---CCceEE-EEeccceEEEccCceeEeeeeeEEecCCCCCChHHhh
Confidence 567799999999863100 000000 001123344432222 358899999999876444
No 113
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=28.64 E-value=1.6e+02 Score=25.41 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=40.7
Q ss_pred CCceEEEEeCCCHH-HHhcChhHHHHHHcCCEEEEeCCCchHHHHHHhhhccCcceEee
Q 005321 462 GQKDIYYITGESRK-AVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSA 519 (702)
Q Consensus 462 ~Q~~IyY~~~~~~~-~~~~sp~~e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v 519 (702)
+.+.+|.+.|+++. .+..+|+.- ..|..+|+..+.+++.+...|......++.-|
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a~---~~~~PIll~~~~l~~~~~~~l~~~~~~~v~ii 79 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLAA---KNNAPILLVNNSLPSSVKAFLKSLNIKKVYII 79 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHHH---hcCCeEEEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 45678888887754 344455533 37889999999999999999998866666555
No 114
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=28.61 E-value=73 Score=29.02 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=27.5
Q ss_pred cceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccceEEEeccccccc
Q 005321 299 LAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMD 347 (702)
Q Consensus 299 l~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d 347 (702)
|..+++.. +.+.++|++--|... +..+..+.+|||+++|.+
T Consensus 17 l~~i~~~~-~~~~i~G~is~~~~~-------~~~~~~q~~fVN~R~v~~ 57 (122)
T cd00782 17 LIEVELES-GDFRISGYISKPDFG-------RSSKDRQFLFVNGRPVRD 57 (122)
T ss_pred ceEEeccC-CCEEEEEEEECchhh-------cCCCccEEEEECCeEecC
Confidence 44444332 448888877666532 334678999999999975
No 115
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=27.13 E-value=1.2e+02 Score=33.62 Aligned_cols=45 Identities=31% Similarity=0.589 Sum_probs=34.9
Q ss_pred hcChhHHHHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCC
Q 005321 478 ENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKL 526 (702)
Q Consensus 478 ~~sp~~e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l 526 (702)
.++|+.+.++++|+.|+|..|.+|+.++.... ..+.++++..+.+
T Consensus 296 ~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~----rql~~~dk~~iaF 340 (360)
T PF07429_consen 296 RDNPFWQDLKEQGIPVLFYGDELDEALVREAQ----RQLANVDKQQIAF 340 (360)
T ss_pred cCChHHHHHHhCCCeEEeccccCCHHHHHHHH----HHHhhCcccceee
Confidence 47899999999999999999999999887542 2455555555444
No 116
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=22.35 E-value=1.3e+02 Score=33.94 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=31.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccce
Q 005321 66 PELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFY 131 (702)
Q Consensus 66 ~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~ 131 (702)
.+..|+|.+.. +.-+.| ||.-|+.-++...|-.|| |++|||+.
T Consensus 211 ~p~~v~i~F~~-G~pv~i--ng~~~~~~~li~~lN~i~--------------------g~~GvGr~ 253 (394)
T TIGR00032 211 EPEVVTIDFEQ-GVPVAL--NGVSLDPVELILEANEIA--------------------GKHGVGRI 253 (394)
T ss_pred CCeEEEEEEEc-ceEEEE--CCccCCHHHHHHHHHHHH--------------------HhcccCcc
Confidence 34577777753 455566 899999999998877665 78889874
No 117
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=22.06 E-value=7.5e+02 Score=26.51 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hCHHHHHHH--HHHHhHHhhcccc--CChhhHHHHhchhcceecCCCCcccCHHHHHH
Q 005321 383 ILKVIRKNLVKKCIEMFNEIA-ENKEDYAKF--YDAFSKNIKLGIH--EDSQNRAKLADLLRFHSTKSGDEMTSLKDYVT 457 (702)
Q Consensus 383 ~l~~i~~~l~~k~l~~l~~la-~d~~~y~~f--~~~~~~~lK~g~~--eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~ 457 (702)
-.+.-.+.+.++++..+++-. ..++.+++- ..--|.+|=.|+. ...+..+.+.+++.-+=.. --.+.+.+
T Consensus 73 e~K~r~NeiA~~vl~~vr~~~~~~~~dl~~Avk~ai~GN~iDfgv~G~~~~~lee~~~~~~~~~l~i-----~d~~k~~~ 147 (285)
T COG1578 73 EYKRRANEIALKVLPKVRENIEDTPEDLKTAVKLAIVGNVIDFGVLGFSPFDLEEEVEKLLDAELYI-----DDSPKLLE 147 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcceeeccccCCHhHHHHHHHHhhcCcccc-----cchHHHHH
Confidence 345556667777777777633 255555433 3346667777776 3566667777665432211 12233445
Q ss_pred hhccCCceEEEEeCCC
Q 005321 458 RMKEGQKDIYYITGES 473 (702)
Q Consensus 458 rm~~~Q~~IyY~~~~~ 473 (702)
+.+.. .|||++.+-
T Consensus 148 ~l~~a--~VlYl~DNa 161 (285)
T COG1578 148 LLKNA--SVLYLTDNA 161 (285)
T ss_pred HhccC--cEEEEecCC
Confidence 55544 688888653
No 118
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=22.01 E-value=84 Score=31.65 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=30.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHhccCCcccccCCCCceEEECCCChHHHHHHhhhh
Q 005321 572 CCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAE 626 (702)
Q Consensus 572 a~lv~~e~g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~ 626 (702)
.+||...+-+|.-+.|+|-.. -+-.|...-...++-.+||.|||.+.|-+...
T Consensus 95 GLiVLHSGHfSKiFkRLMGTp--C~LKWREAgErERvWvvnp~HPIA~GigE~~~ 147 (261)
T COG4813 95 GLIVLHSGHFSKIFKRLMGTP--CALKWREAGERERVWVVNPGHPIAEGIGESFE 147 (261)
T ss_pred ceEEEeccchhHHHHHHcCCc--cccchhhcCcceeEEEeCCCCchhhcchhhEE
Confidence 344444444566666665311 01112222335589999999999999975543
No 119
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=22.01 E-value=1.2e+02 Score=25.84 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=28.6
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGV 88 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 88 (702)
...+++|+|+|-+... -|+.+.....+.+.|.|+|.
T Consensus 23 Sap~Krl~~~ak~~~~-------------------lIdaT~Grktrsviitdsgh 58 (73)
T PF04025_consen 23 SAPIKRLIQEAKEEGK-------------------LIDATYGRKTRSVIITDSGH 58 (73)
T ss_pred chhHHHHHHHHHHcCc-------------------EEEeeCCCceeEEEEEcCCc
Confidence 4578999999988864 46776666668899999996
No 120
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=21.10 E-value=1.3e+02 Score=34.66 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=33.3
Q ss_pred chhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q 005321 33 KEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKA 93 (702)
Q Consensus 33 ~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 93 (702)
|.-.|-=||.||.-.+-.-+ .+...+.|.+..+..+-.|.|+|||.|..++
T Consensus 457 P~filQPLVENAIKHG~~~~----------~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGISQL----------KDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcccch----------hcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 33456679999998764211 1223455555555445678999999999886
No 121
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=20.96 E-value=1.7e+02 Score=25.27 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=23.3
Q ss_pred eeEEEEEEEeeCCCCCCchhhhhcccceEEEecccccc
Q 005321 309 QLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIM 346 (702)
Q Consensus 309 ~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~ 346 (702)
.++++|++--|... +..+..+.+|||++++.
T Consensus 26 ~~~v~g~l~~~~~~-------~~~~~~~~~fvN~r~v~ 56 (107)
T cd00329 26 GFRVEGAISYPDSG-------RSSKDRQFSFVNGRPVR 56 (107)
T ss_pred CEEEEEEEeCCccC-------cccCCcEEEEEcCeEEc
Confidence 48888877777653 22367899999999997
No 122
>PF06523 DUF1106: Protein of unknown function (DUF1106); InterPro: IPR009490 This family consists of several hypothetical bacterial proteins found in Escherichia coli and Citrobacter rodentium. The function of this family is unknown.
Probab=20.95 E-value=46 Score=28.08 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.8
Q ss_pred ccceEEEecccccccccccccccc
Q 005321 333 LNNIKLYVRRVFIMDNCEELIPEY 356 (702)
Q Consensus 333 ~~~i~lYv~~v~I~d~~~~llP~~ 356 (702)
++.|.||-++-.|.|+++++.|+-
T Consensus 58 ~~hi~ly~kk~yi~dklkeifpde 81 (91)
T PF06523_consen 58 SNHIFLYHKKNYIFDKLKEIFPDE 81 (91)
T ss_pred cceEEEEecchhHHHHHHHhCCCC
Confidence 577999999999999999999973
No 123
>PRK13820 argininosuccinate synthase; Provisional
Probab=20.84 E-value=1.4e+02 Score=33.68 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=34.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceE
Q 005321 67 ELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKV 140 (702)
Q Consensus 67 ~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v 140 (702)
+..|+|.+.. +.-+.| ||--|+.-++...|-.|| |++|||+. =+|-+++
T Consensus 212 p~~v~i~F~~-G~pv~l--ng~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~ve~r~ 260 (394)
T PRK13820 212 PEIVEIEFEE-GVPVAI--NGEKMDGVELIRKLNEIA--------------------GKHGVGRT--DMMEDRV 260 (394)
T ss_pred CeEEEEEEEc-cEEEEE--CCeeCCHHHHHHHHHHHH--------------------hhcccCcc--ccccccc
Confidence 4567777753 445555 899999999988777665 78999985 3444544
No 124
>PRK04527 argininosuccinate synthase; Provisional
Probab=20.52 E-value=1.4e+02 Score=33.77 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecce
Q 005321 67 ELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEK 139 (702)
Q Consensus 67 ~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~ 139 (702)
+..|+|.+.. +.-+.| ||--|+.-+|...|..|| |++|||+. =+|-++
T Consensus 215 p~~v~i~Fe~-G~pv~l--nG~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~vEnr 262 (400)
T PRK04527 215 ALTVTIKFVE-GEAVAL--DGKPLPGAQILAKLNKLF--------------------AQYGVGRG--VYTGDT 262 (400)
T ss_pred CeEEEEEEEc-cEEEEE--CCEeCCHHHHHHHHHHHH--------------------hhcccCce--eeeccc
Confidence 4577777753 344555 899999999998887665 78999984 344444
Done!