Query 005321
Match_columns 702
No_of_seqs 282 out of 1801
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:03:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 5E-168 2E-172 1435.4 47.7 663 9-672 3-677 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 6E-155 2E-159 1327.5 57.6 631 9-676 22-664 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 4E-149 1E-153 1276.7 50.2 614 6-668 1-623 (624)
4 1y4s_A Chaperone protein HTPG; 100.0 2E-135 7E-140 1150.4 38.4 549 6-593 1-558 (559)
5 3q6m_A Heat shock protein HSP 100.0 6E-122 2E-126 1002.8 38.4 435 268-702 3-442 (448)
6 3hjc_A Heat shock protein 83-1 100.0 3E-121 9E-126 1002.6 40.3 417 260-676 11-427 (444)
7 2cge_A ATP-dependent molecular 100.0 1E-115 5E-120 954.8 40.8 404 268-672 1-405 (405)
8 1hk7_A Heat shock protein HSP8 100.0 2.9E-90 1E-94 715.5 23.3 288 268-556 1-288 (288)
9 2gq0_A Chaperone protein HTPG; 100.0 4.3E-88 1.5E-92 703.8 24.3 289 268-577 2-295 (303)
10 3pry_A Heat shock protein HSP 100.0 3.3E-86 1.1E-90 679.8 24.6 263 266-528 1-263 (268)
11 1usu_A Heat shock protein HSP8 100.0 6.8E-86 2.3E-90 675.7 22.7 257 266-522 1-257 (260)
12 1y6z_A Heat shock protein, put 100.0 5.7E-83 1.9E-87 658.2 21.6 258 266-523 1-263 (263)
13 3peh_A Endoplasmin homolog; st 100.0 9.5E-61 3.2E-65 496.0 25.2 257 9-266 23-281 (281)
14 1qy5_A Endoplasmin; GRP94, NEC 100.0 1.8E-55 6.1E-60 458.0 19.8 257 9-266 5-269 (269)
15 3ied_A Heat shock protein; HSP 100.0 4.3E-55 1.5E-59 443.9 18.4 205 9-215 24-271 (272)
16 3nmq_A Heat shock protein HSP 100.0 8E-54 2.7E-58 436.1 22.1 208 9-217 16-223 (239)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 2.3E-50 7.7E-55 414.6 22.1 217 9-226 37-253 (256)
18 3t0h_A Heat shock protein HSP 100.0 2.5E-49 8.5E-54 402.8 22.0 215 9-224 9-223 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 2.9E-48 1E-52 398.1 21.0 208 8-216 8-220 (236)
20 2wer_A ATP-dependent molecular 100.0 2.6E-45 8.8E-50 372.9 22.3 209 10-218 4-212 (220)
21 1yc1_A HSP 86, heat shock prot 100.0 2.6E-45 9E-50 381.1 21.8 210 9-219 45-254 (264)
22 2ior_A Chaperone protein HTPG; 100.0 4.8E-41 1.7E-45 344.5 18.7 205 8-215 23-232 (235)
23 1sf8_A Chaperone protein HTPG; 100.0 3.1E-32 1.1E-36 251.4 12.4 114 545-668 12-125 (126)
24 1b63_A MUTL; DNA mismatch repa 99.9 2.3E-21 7.9E-26 208.4 18.0 276 27-392 19-329 (333)
25 1h7s_A PMS1 protein homolog 2; 99.8 2.4E-19 8.4E-24 194.6 14.4 170 17-213 14-200 (365)
26 3h4l_A DNA mismatch repair pro 99.8 1.9E-19 6.7E-24 194.9 11.8 283 28-393 21-356 (367)
27 3na3_A DNA mismatch repair pro 99.8 9.6E-19 3.3E-23 188.0 15.3 282 21-393 16-333 (348)
28 1kij_A DNA gyrase subunit B; t 99.3 2.3E-10 7.9E-15 125.1 21.4 149 34-205 34-194 (390)
29 1s16_A Topoisomerase IV subuni 99.3 1.8E-10 6.2E-15 125.9 20.3 164 27-214 23-203 (390)
30 3fv5_A DNA topoisomerase 4 sub 99.2 4.8E-11 1.6E-15 119.1 10.1 162 32-215 17-190 (201)
31 3cwv_A DNA gyrase, B subunit, 99.2 6.2E-10 2.1E-14 120.7 19.4 143 33-205 31-183 (369)
32 1ei1_A DNA gyrase B, GYRB; ATP 99.1 1.1E-09 3.9E-14 119.6 19.2 157 32-214 34-205 (391)
33 1mu5_A Type II DNA topoisomera 99.0 5E-10 1.7E-14 125.3 9.5 149 34-205 34-197 (471)
34 2zbk_B Type 2 DNA topoisomeras 98.9 1.5E-09 5.3E-14 122.8 10.6 150 34-206 33-197 (530)
35 4duh_A DNA gyrase subunit B; s 98.7 3.7E-08 1.3E-12 99.4 10.4 159 33-215 36-207 (220)
36 2q2e_B Type 2 DNA topoisomeras 98.7 7.3E-09 2.5E-13 119.0 4.5 158 34-215 39-212 (621)
37 1zxm_A TOPO IIA ATPase, DNA to 98.7 3.4E-08 1.2E-12 108.0 9.5 151 34-205 54-220 (400)
38 4emv_A DNA topoisomerase IV, B 98.6 1.5E-07 5E-12 95.3 11.4 157 34-215 42-213 (226)
39 3lnu_A Topoisomerase IV subuni 98.4 2E-06 6.8E-11 94.0 12.8 165 27-215 42-223 (408)
40 3ttz_A DNA gyrase subunit B; p 98.2 5.1E-06 1.7E-10 82.5 11.6 142 33-215 32-180 (198)
41 1pvg_A DNA topoisomerase II; G 98.0 1.2E-05 4.1E-10 88.3 10.1 128 35-185 67-208 (418)
42 1id0_A PHOQ histidine kinase; 97.5 7.2E-05 2.5E-09 69.1 4.5 74 35-138 47-120 (152)
43 3jz3_A Sensor protein QSEC; he 97.5 5.2E-05 1.8E-09 74.2 3.4 72 36-138 121-192 (222)
44 1th8_A Anti-sigma F factor; SP 97.4 0.00013 4.5E-09 67.3 5.8 85 34-145 41-125 (145)
45 1ysr_A Sensor-type histidine k 97.4 0.00015 5.2E-09 66.9 5.6 76 35-138 49-124 (150)
46 4ew8_A Sensor protein DIVL; si 97.3 0.0002 7E-09 72.4 6.3 74 35-138 158-231 (268)
47 1i58_A Chemotaxis protein CHEA 97.3 0.00014 4.7E-09 70.1 4.4 56 37-96 52-109 (189)
48 3d36_A Sporulation kinase B; G 97.3 0.00024 8.2E-09 70.5 5.7 74 36-138 127-200 (244)
49 2btz_A Pyruvate dehydrogenase 97.2 0.00035 1.2E-08 75.9 7.0 116 35-185 234-349 (394)
50 3ehg_A Sensor kinase (YOCF pro 97.2 0.00017 5.8E-09 65.2 3.4 45 36-95 44-88 (128)
51 3sl2_A Sensor histidine kinase 97.2 0.00013 4.4E-09 69.6 2.6 80 35-138 46-127 (177)
52 3ehh_A Sensor kinase (YOCF pro 97.2 0.00026 9.1E-09 69.3 4.9 45 36-95 134-178 (218)
53 3a0y_A Sensor protein; ATP-LID 97.2 0.00024 8.3E-09 65.2 4.3 73 35-137 50-122 (152)
54 2e0a_A Pyruvate dehydrogenase 97.2 0.00042 1.4E-08 75.4 6.8 117 35-185 233-349 (394)
55 1bxd_A ENVZ(290-450), protein 97.1 0.00016 5.4E-09 67.7 2.8 76 35-138 50-125 (161)
56 1y8o_A [pyruvate dehydrogenase 97.1 0.00051 1.7E-08 75.4 6.4 118 35-185 256-373 (419)
57 4gfh_A DNA topoisomerase 2; to 97.1 0.0028 9.6E-08 77.7 13.3 145 35-203 62-223 (1177)
58 1gkz_A [3-methyl-2-oxobutanoat 97.0 0.00039 1.3E-08 75.3 4.2 59 35-99 241-299 (388)
59 2c2a_A Sensor histidine kinase 96.8 0.0008 2.7E-08 67.9 4.7 81 35-138 141-223 (258)
60 2q8g_A [pyruvate dehydrogenase 96.8 0.0012 4.3E-08 71.9 6.2 117 35-185 246-362 (407)
61 1r62_A Nitrogen regulation pro 96.5 0.0013 4.3E-08 60.8 3.3 75 35-138 51-135 (160)
62 3zxo_A Redox sensor histidine 96.3 0.0014 4.9E-08 58.6 2.3 43 36-94 47-89 (129)
63 1b3q_A Protein (chemotaxis pro 96.2 0.0052 1.8E-07 66.5 6.4 52 37-96 111-168 (379)
64 3a0r_A Sensor protein; four he 95.5 0.005 1.7E-07 64.3 2.7 48 36-97 248-295 (349)
65 3zxq_A Hypoxia sensor histidin 95.5 0.0074 2.5E-07 53.5 3.4 44 35-94 42-85 (124)
66 4fpp_A Phosphotransferase; fou 95.2 0.013 4.3E-07 59.3 4.2 48 36-97 150-199 (247)
67 3ke6_A Protein RV1364C/MT1410; 85.5 0.77 2.6E-05 49.7 5.4 73 34-144 299-372 (399)
68 1ixm_A SPO0B, protein (sporula 72.9 2.7 9.3E-05 40.9 4.1 54 36-97 109-164 (192)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-168 Score=1435.41 Aligned_cols=663 Identities=68% Similarity=1.056 Sum_probs=572.4
Q ss_pred ccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005321 9 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGV 88 (702)
Q Consensus 9 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 88 (702)
.|+|.||+|+++||++|+++||||+++|||||||||+||++++|++++++++.......+.|+|.+++++++|+|+|||+
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 82 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCC
Confidence 37999999999999999999999999999999999999999999999999988777788999999998889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCC
Q 005321 89 GMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDV 168 (702)
Q Consensus 89 GMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~ 168 (702)
|||++||.++|++||+||++.|+++++.+.+...||||||||||+||+|++|+|+||+.++.++.|++.|++.|+|.+++
T Consensus 83 GMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~ 162 (677)
T 2cg9_A 83 GMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDE 162 (677)
T ss_dssp CCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECC
T ss_pred CCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecC
Confidence 99999999999999999999999888765677899999999999999999999999998777999999999999999853
Q ss_pred CCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhh-----------hhhcccC
Q 005321 169 SGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEE-----------TKEEEEG 237 (702)
Q Consensus 169 ~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 237 (702)
.+...++||+|+|+|+++..+|++.++|+++|++||.|++|||+++.+++.+.+++++++++ +++++++
T Consensus 163 ~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~ 242 (677)
T 2cg9_A 163 VNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKP 242 (677)
T ss_dssp SSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC--------------------------
T ss_pred CCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhcccccccccccccccccc
Confidence 23456899999999999999999999999999999999999999986554434433322110 0011112
Q ss_pred CccccchhhhhhccccceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEE
Q 005321 238 DVEDVDEDKEKKGKKKKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILF 317 (702)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~ 317 (702)
+.+++++++++++++|++++++++|+.+|+.+|||+|+|++||+++|.+||++++++|++||+|+||++||+++|+||||
T Consensus 243 ~~~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~~~~~~lLy 322 (677)
T 2cg9_A 243 KLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILF 322 (677)
T ss_dssp -------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSSSCEEEEEE
T ss_pred ccccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEecccccceEEEEEE
Confidence 22222221112344566666678999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCchhhhhcccceEEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHH
Q 005321 318 VPRRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIE 397 (702)
Q Consensus 318 iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~ 397 (702)
||+++||++|.++..+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|+++
T Consensus 323 iP~~ap~d~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~ 402 (677)
T 2cg9_A 323 IPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIE 402 (677)
T ss_dssp ECSSCCC---------CCSEEEETTEEEEECSTTTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCchhhhhhhhccCCeEEEEeeeEeecChhhhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999999998656679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHH
Q 005321 398 MFNEIAENKEDYAKFYDAFSKNIKLGIHEDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAV 477 (702)
Q Consensus 398 ~l~~la~d~~~y~~f~~~~~~~lK~g~~eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~ 477 (702)
+|.+||+|+++|++||++||.+||+|+++|..||++|++||||+||+++++++||+||++||+++|+.|||++|++++++
T Consensus 403 ~l~~la~~~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~ 482 (677)
T 2cg9_A 403 AFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAV 482 (677)
T ss_dssp HHHHHHSCSHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCEEEEEECSCSTTT
T ss_pred HHHHHHhCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCceEEEEeCCCHHHH
Confidence 99999999999999999999999999999999999999999999999766899999999999999999999999999999
Q ss_pred hcChhHHHHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCCCcchHHHHhHHHHHHhHHHHHHHHHHHhCCc
Q 005321 478 ENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEEDDEEKKKREEKKKSFENLCKTIKEILGDN 557 (702)
Q Consensus 478 ~~sp~~e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~~e~~~~~e~~~~~~~~L~~~~k~~L~~~ 557 (702)
++|||+|.|+++|||||||++||||+||++|.+|+|++|++|+++ +++++.+++++..++.+++|++||+|||++|+++
T Consensus 483 ~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~ 561 (677)
T 2cg9_A 483 EKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQ 561 (677)
T ss_dssp TTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCSSTTSSTTHHHHHGGGHHHHHHHHHTTCSS
T ss_pred HhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-cccccchhhhhhhhhhHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999 9887654444445566779999999999999999
Q ss_pred eeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhccCCcccccCCCCceEEECCCChHHHHHHhhhhcC-CCchhHHH
Q 005321 558 VEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEVD-KNDKSVKD 636 (702)
Q Consensus 558 V~~V~vS~rL~dsPa~lv~~e~g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d-~~~~~~~~ 636 (702)
|.+|++|+||++||||||++++|||++|+|||++|+++++.+.+++..+++|||||+||||++|..+...| .+++.+++
T Consensus 562 v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~~LeiNp~hpli~~L~~~~~~d~~~~~~~~~ 641 (677)
T 2cg9_A 562 VEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKD 641 (677)
T ss_dssp CSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC-------------CEEEECTTCHHHHHHHHHHHTCCSSCSSSST
T ss_pred ceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhccccccccccccCceEEEcCCCHHHHHHHHhhhccccCHHHHHH
Confidence 99999999999999999999999999999999998776665556778899999999999999998876544 34567999
Q ss_pred HHHHHHHhHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Q 005321 637 LVLLLYETALLTSGFSLDDPNTFAARIHRMLKLGLS 672 (702)
Q Consensus 637 ~~~lLyd~All~~G~~i~d~~~f~~ri~~ll~~~l~ 672 (702)
+|++|||+|+|++|++++||+.|++|+|+||.++||
T Consensus 642 ~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~~~l~ 677 (677)
T 2cg9_A 642 LTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677 (677)
T ss_dssp THHHHHHHHHHHTTCCCSSTTHHHHHHHHTSSSSCC
T ss_pred HHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999987765
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=5.9e-155 Score=1327.50 Aligned_cols=631 Identities=54% Similarity=0.920 Sum_probs=541.4
Q ss_pred ccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005321 9 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGV 88 (702)
Q Consensus 9 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 88 (702)
.|++.||+++++|+++|+++||||+++|||||||||+||++|+|+++++++.......++.|+|.+++++++|+|+|||+
T Consensus 22 ~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 101 (666)
T 2o1u_A 22 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 101 (666)
T ss_dssp ------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999988777778899999998889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcC-----CCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEE
Q 005321 89 GMTKADLVNNLGTIARSGTKEFMEALQAG-----ADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFT 163 (702)
Q Consensus 89 GMt~~dl~~~l~~Ia~S~~~~f~~~~~~~-----~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~ 163 (702)
|||++||.++|++||+||++.|+++++.+ .+...||||||||||+||||++|+|+||+.++.++.|+++| |.|+
T Consensus 102 GMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~g-g~~t 180 (666)
T 2o1u_A 102 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFS 180 (666)
T ss_dssp CCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESS-SCCE
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeC-CeEE
Confidence 99999999999999999999999888754 46789999999999999999999999999777799999998 8999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhhhcccCCccccc
Q 005321 164 VTRDVSGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETKEEEEGDVEDVD 243 (702)
Q Consensus 164 i~~~~~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (702)
+.+...+...++||+|+|+|+++..+|++.++|+++|++||.|+++||+++.+++.+
T Consensus 181 i~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~~~~----------------------- 237 (666)
T 2o1u_A 181 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGG----------------------- 237 (666)
T ss_dssp EEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC--------------------------
T ss_pred EEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEecccccc-----------------------
Confidence 988532234689999999999999999999999999999999999999997643100
Q ss_pred hhhhhhccccceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCC
Q 005321 244 EDKEKKGKKKKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAP 323 (702)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p 323 (702)
+ ++...+|+.+|+++|+|+++++++++++|.+||+.++++|.+||+|+|+++||+++|+|+||+|..+|
T Consensus 238 ------~-----~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~eg~~~~~gll~iP~~~p 306 (666)
T 2o1u_A 238 ------G-----GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAP 306 (666)
T ss_dssp ---------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEECSSSCEEEEEEECSSCC
T ss_pred ------c-----cccccceEEEecCccccccCcccccHHHHHHHHhhhccccccCeeEEEecccCcEEEEEEEEcCCCCc
Confidence 0 01125789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhh--hcccceEEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHH
Q 005321 324 FDLFDTR--KKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNE 401 (702)
Q Consensus 324 ~~~~~~~--~~~~~i~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~ 401 (702)
|++|... ..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++||+.|++|++++|.+
T Consensus 307 ~d~~~~~~~~~~~~i~LYVn~vfI~d~~~~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~ 386 (666)
T 2o1u_A 307 RGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKK 386 (666)
T ss_dssp C------------CEEEEETTEEEESCCCTTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccCCeEEEEcCeEeeCchhhhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 9998742 35789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCHHHHH-HHHHHHhHHhhccccCChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcC
Q 005321 402 IAENKEDYA-KFYDAFSKNIKLGIHEDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENS 480 (702)
Q Consensus 402 la~d~~~y~-~f~~~~~~~lK~g~~eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~s 480 (702)
|++ ++|+ +||++||.+||+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|++++++++|
T Consensus 387 l~~--e~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~s 464 (666)
T 2o1u_A 387 IAD--EKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESS 464 (666)
T ss_dssp SCH--HHHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEETTSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHTC
T ss_pred HHH--HHHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhhC
Confidence 998 9999 9999999999999999999999999999999999867899999999999999999999999999999999
Q ss_pred hhHHHHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCCCcchHHHHhHHHHHHhHHHHHHHHHHH-hCCcee
Q 005321 481 PFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEEDDEEKKKREEKKKSFENLCKTIKEI-LGDNVE 559 (702)
Q Consensus 481 p~~e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~~e~~~~~e~~~~~~~~L~~~~k~~-L~~~V~ 559 (702)
||+|.|+++|||||||++||||+||++|.+|+|++|++|+++++++++.+++++..++.+++|++||+|||++ |+++|.
T Consensus 465 p~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~k~~~L~~~v~ 544 (666)
T 2o1u_A 465 PFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDKIE 544 (666)
T ss_dssp GGGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHTTTTTTEE
T ss_pred cHHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEecccccccccchhhhhhhhhhHHhHHHHHHHHHhccCCCcee
Confidence 9999999999999999999999999999999999999999999999876555555566678999999999999 999999
Q ss_pred EEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcc---CCcccccCCCCceEEECCCChHHHHHHhhhhcCCCchhHHH
Q 005321 560 KVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALR---DSSMSSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKD 636 (702)
Q Consensus 560 ~V~vS~rL~dsPa~lv~~e~g~s~~meR~mkaq~~~---~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d~~~~~~~~ 636 (702)
+|++|+||++||||+|++++|||++|+|||++|++. ++.+.+++..+++|||||+||||++|..+...|++++.+++
T Consensus 545 ~V~~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~~~~~~~~~~~~~ 624 (666)
T 2o1u_A 545 KAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVSD 624 (666)
T ss_dssp EEEECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHHTSCCCCSCSSSSCCEEEEECTTSHHHHHHHHHHHHCTTCHHHHH
T ss_pred EEEEeecCCCCCeEEEecCcccCHHHHHHHHHhhhhcccCcccccccccCeeeEECCCCHHHHHHHHhhhcccchHHHHH
Confidence 999999999999999999999999999999999872 33344567789999999999999999987665656678999
Q ss_pred HHHHHHHhHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCcc
Q 005321 637 LVLLLYETALLTSGFSLDDPNTFAARIHRMLKLGLSIEED 676 (702)
Q Consensus 637 ~~~lLyd~All~~G~~i~d~~~f~~ri~~ll~~~l~~~~~ 676 (702)
+|++|||+|+|++|++++||+.|++|+|+||.++|+++++
T Consensus 625 ~~~~l~d~All~~G~~~~dp~~f~~r~~~ll~~~l~~~~~ 664 (666)
T 2o1u_A 625 LAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPD 664 (666)
T ss_dssp HHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999864
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=3.7e-149 Score=1276.72 Aligned_cols=614 Identities=41% Similarity=0.726 Sum_probs=523.6
Q ss_pred CCcccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEe
Q 005321 6 MGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIID 85 (702)
Q Consensus 6 ~~~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~D 85 (702)
|+..|++.||+++++||++|+++||+|+++|||||||||+||++|+|+.+++++.......++.|+|.+++++++|+|.|
T Consensus 1 m~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~D 80 (624)
T 2ioq_A 1 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISD 80 (624)
T ss_dssp --------------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEE
T ss_pred CCcccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEE
Confidence 33348999999999999999999999999999999999999999999999999987777777899999998889999999
Q ss_pred CCCCCCHHHHHHHHhhhhccCchhHHHHHhcC--CCCcccccccccceeeeeecceEEEEeecCC---CceEEEEEccCc
Q 005321 86 SGVGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAEKVIVTTKHND---DEQYVWESQAGG 160 (702)
Q Consensus 86 nGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~--~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~---~~~~~w~~~~~~ 160 (702)
||+|||++||.++|++||+||++.|+++++.+ .+...||+|||||||+||||++|+|+|++.+ +.++.|++.|++
T Consensus 81 nGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~ 160 (624)
T 2ioq_A 81 NGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG 160 (624)
T ss_dssp CSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSS
T ss_pred CCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCC
Confidence 99999999999999999999999998877642 3677999999999999999999999999865 568999999999
Q ss_pred eEEEEeCCCCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhhhcccCCcc
Q 005321 161 SFTVTRDVSGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETKEEEEGDVE 240 (702)
Q Consensus 161 ~~~i~~~~~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (702)
.|++.+. ...++||+|+|+|++++.+|++.++|+++|++||.|+++||+++.+. . + +
T Consensus 161 ~~~i~~~---~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~~~e---~-----~--------~---- 217 (624)
T 2ioq_A 161 EYTVADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKRE---E-----K--------D---- 217 (624)
T ss_dssp CCEEEEE---CCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEEEEE---E-----C--------S----
T ss_pred eEEEEEC---CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeecc---c-----c--------c----
Confidence 9999874 34589999999999999999999999999999999999999995410 0 0 0
Q ss_pred ccchhhhhhccccceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeC
Q 005321 241 DVDEDKEKKGKKKKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPR 320 (702)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~ 320 (702)
++ .+.+|+.+|+++|+|+++++++++++|.+||+.++++|.+||+|+|++++|+++|+|+||+|.
T Consensus 218 ---------~~------~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~ 282 (624)
T 2ioq_A 218 ---------GE------TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPS 282 (624)
T ss_dssp ---------SC------EEEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEEESSSCEEEEEECCS
T ss_pred ---------cc------cccceEEEeCCccceEecCccchHHHHHHHHHhhccchhcCeEEEEecccceEEEEEEEEeCC
Confidence 00 135789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcccceEEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHH
Q 005321 321 RAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFN 400 (702)
Q Consensus 321 ~~p~~~~~~~~~~~~i~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~ 400 (702)
.+||++|. +..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++||+.|++|++++|.
T Consensus 283 ~~p~~~~~-r~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~ 361 (624)
T 2ioq_A 283 QAPWDMWN-RDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLE 361 (624)
T ss_dssp SCCGGGSS-SSCCCCEEEEESSCEEEEEECSSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred cCccchhh-hcccCCeEEEECCEEeecchhccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999886 44678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh-CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcceecCCCC--cccCHHHHHHhhccCCceEEEEeCCCHHHH
Q 005321 401 EIAE-NKEDYAKFYDAFSKNIKLGIHEDSQNRAKLADLLRFHSTKSGD--EMTSLKDYVTRMKEGQKDIYYITGESRKAV 477 (702)
Q Consensus 401 ~la~-d~~~y~~f~~~~~~~lK~g~~eD~~~~~~l~~lLrf~ts~~~~--~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~ 477 (702)
+||+ ||++|++||++||.+||+|+++|+.||++|++||||+||++++ +++||+||++|||++|+.|||++|++++++
T Consensus 362 ~l~~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~ 441 (624)
T 2ioq_A 362 KLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAA 441 (624)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHH
T ss_pred HHHhcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHH
Confidence 9998 9999999999999999999999999999999999999998653 799999999999999999999999999999
Q ss_pred hcChhHHHHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCCCcc-hHHHHhHHHHHHhHHHHHHHHHHHhCC
Q 005321 478 ENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEED-DEEKKKREEKKKSFENLCKTIKEILGD 556 (702)
Q Consensus 478 ~~sp~~e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~-~e~~~~~e~~~~~~~~L~~~~k~~L~~ 556 (702)
++|||+|.|+++|||||||++||||+|+++|.+|+|++|++|+++++++++. +++++..++.+++|++||+|||++|++
T Consensus 442 ~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~ 521 (624)
T 2ioq_A 442 KSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGE 521 (624)
T ss_dssp HHCHHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSCSTTTTTCC-------HHHHHHHHHHHHHHHHHSSS
T ss_pred hhChHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecccccccccchhhhhhhhHhHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999988753 333333445677899999999999999
Q ss_pred ceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhccCCcccccCCCCceEEECCCChHHHHHHhhhhcCCCchhHHH
Q 005321 557 NVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKD 636 (702)
Q Consensus 557 ~V~~V~vS~rL~dsPa~lv~~e~g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d~~~~~~~~ 636 (702)
+|++|++|+||+++|||+|++++|||++|+|||++|++ .++..+++|||||+||||++|... .+++.+++
T Consensus 522 ~v~~V~~s~rl~~sP~~lv~~~~~~~~~m~r~m~~~~~------~~~~~~~~LeiN~~hpli~~L~~~----~~~~~~~~ 591 (624)
T 2ioq_A 522 RVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ------KVPEVKYIFELNPDHVLVKRAADT----EDEAKFSE 591 (624)
T ss_dssp SSSEEEECCCCSSCCEEEECCC---------------------------CCEEEECTTCHHHHTTTSC----CCHHHHHH
T ss_pred CceEEEEeecCCCCcEEEEecCcCcCHHHHHHHHHhhh------cccccCceEEECCCCHHHHHHHhh----cCHHHHHH
Confidence 99999999999999999999999999999999998853 244578999999999999999652 24567999
Q ss_pred HHHHHHHhHHHhCCCCCCCHHHHHHHHHHHHH
Q 005321 637 LVLLLYETALLTSGFSLDDPNTFAARIHRMLK 668 (702)
Q Consensus 637 ~~~lLyd~All~~G~~i~d~~~f~~ri~~ll~ 668 (702)
+|++|||+|+|++|++++||+.|++|+|+||.
T Consensus 592 ~~~~L~d~All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 592 WVELLLDQALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp HHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999996
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=2.2e-135 Score=1150.42 Aligned_cols=549 Identities=43% Similarity=0.758 Sum_probs=439.7
Q ss_pred CCcccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEe
Q 005321 6 MGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIID 85 (702)
Q Consensus 6 ~~~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~D 85 (702)
|+..|++.||+++++|+++|+++||+||++|||||||||+||++|+|+.+++++........+.|+|.+++++++|+|.|
T Consensus 1 m~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~D 80 (559)
T 1y4s_A 1 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISD 80 (559)
T ss_dssp CCSCEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEE
T ss_pred CCCccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEE
Confidence 33448999999999999999999999999999999999999999999999999988777777899999998889999999
Q ss_pred CCCCCCHHHHHHHHhhhhccCchhHHHHHhcC--CCCcccccccccceeeeeecceEEEEeecCC---CceEEEEEccCc
Q 005321 86 SGVGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAEKVIVTTKHND---DEQYVWESQAGG 160 (702)
Q Consensus 86 nGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~--~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~---~~~~~w~~~~~~ 160 (702)
||+|||++||.++|++||+||++.|+++++.+ .+...||+|||||||+||||++|+|+|++.+ ..++.|++.+++
T Consensus 81 nGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~ 160 (559)
T 1y4s_A 81 NGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG 160 (559)
T ss_dssp CSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSS
T ss_pred CCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCC
Confidence 99999999999999999999999887666532 3567999999999999999999999999865 568999999999
Q ss_pred eEEEEeCCCCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhhhcccCCcc
Q 005321 161 SFTVTRDVSGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETKEEEEGDVE 240 (702)
Q Consensus 161 ~~~i~~~~~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (702)
.|++.+. ...++||+|+|+|++++.+|++.++|+++|++||.|+++||+++.+. . ++
T Consensus 161 ~~~i~~~---~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~e---~---~~-------------- 217 (559)
T 1y4s_A 161 EYTVADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKRE---E---KD-------------- 217 (559)
T ss_dssp EEEEEEE---CCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEEE---C---ST--------------
T ss_pred eeEEeEC---CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeecc---c---cc--------------
Confidence 9999874 34589999999999999999999999999999999999999995410 0 00
Q ss_pred ccchhhhhhccccceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeC
Q 005321 241 DVDEDKEKKGKKKKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPR 320 (702)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~ 320 (702)
++ .+.+|+.+|+++|+|+++++++++++|.+||+.++++|.+||+|+|++++|+++|+|+||+|.
T Consensus 218 ---------~~------~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~ 282 (559)
T 1y4s_A 218 ---------GE------TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPS 282 (559)
T ss_dssp ---------TS------CEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECCCSSSCEEEEEEEES
T ss_pred ---------cc------cccceEEEeCCccceecCcccccHHHHHHHHHhhhhhhhcCeEEEEeccCCceEEEEEEEcCC
Confidence 00 035789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcccceEEEeccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHH
Q 005321 321 RAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFN 400 (702)
Q Consensus 321 ~~p~~~~~~~~~~~~i~lYv~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~ 400 (702)
.+||++|. +..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|+++++||+.|++|++++|.
T Consensus 283 ~~p~~~~~-r~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~I~~~l~kkv~~~l~ 361 (559)
T 1y4s_A 283 QAPWDMWN-RDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLE 361 (559)
T ss_dssp SCCTTCSS-SSCCCCEEEEETTEEEEEEEGGGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhh-hcccCCeEEEEcCEEeecchhhhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999986 45678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh-CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcceecCCCC--cccCHHHHHHhhccCCceEEEEeCCCHHHH
Q 005321 401 EIAE-NKEDYAKFYDAFSKNIKLGIHEDSQNRAKLADLLRFHSTKSGD--EMTSLKDYVTRMKEGQKDIYYITGESRKAV 477 (702)
Q Consensus 401 ~la~-d~~~y~~f~~~~~~~lK~g~~eD~~~~~~l~~lLrf~ts~~~~--~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~ 477 (702)
+||+ ||++|++||++||.+||+|+++|..||++|++||||+||++++ +++||+||++|||++|+.|||++|++++++
T Consensus 362 ~l~~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~ 441 (559)
T 1y4s_A 362 KLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAA 441 (559)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHH
T ss_pred HHHhcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHH
Confidence 9998 9999999999999999999999999999999999999998653 699999999999999999999999999999
Q ss_pred hcChhHHHHHHcCCEEEEeCCCchHHHHHHhhhccCcceEeecccCCCCCcc-hHHHHhHHHHHHhHHHHHHHHHHHhCC
Q 005321 478 ENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEED-DEEKKKREEKKKSFENLCKTIKEILGD 556 (702)
Q Consensus 478 ~~sp~~e~~~~~g~eVL~l~d~iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~-~e~~~~~e~~~~~~~~L~~~~k~~L~~ 556 (702)
++|||+|.|+++|||||||++||||+|+++|.+|+|++|++|+++++++++. +++++..++.+++|++||+|||++|++
T Consensus 442 ~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~ 521 (559)
T 1y4s_A 442 KSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGE 521 (559)
T ss_dssp HTCSSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC--------------------------------------
T ss_pred hhChHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEEecccccccccccchhhhhhhhHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999988654 333334445577899999999999999
Q ss_pred ceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHh
Q 005321 557 NVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQA 593 (702)
Q Consensus 557 ~V~~V~vS~rL~dsPa~lv~~e~g~s~~meR~mkaq~ 593 (702)
+|++|++|+||++||||||++++|||++|+|||++|+
T Consensus 522 ~v~~V~~s~rl~~sp~~~v~~~~~~~~~m~~~~~~~~ 558 (559)
T 1y4s_A 522 RVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG 558 (559)
T ss_dssp -------------------------------------
T ss_pred CceEEEEeccCCCCCEEEEeCCCCcCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999874
No 5
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=5.9e-122 Score=1002.80 Aligned_cols=435 Identities=72% Similarity=1.149 Sum_probs=361.3
Q ss_pred CCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccceEEEeccccccc
Q 005321 268 QKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMD 347 (702)
Q Consensus 268 ~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d 347 (702)
++|||+|+|++||+++|.+|||+++++|++||+|+||++||+++|+||||||+.+||++|+++..++||+||||||||+|
T Consensus 3 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI~d 82 (448)
T 3q6m_A 3 TKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMD 82 (448)
T ss_dssp -CCGGGSCTTSCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC---------CCEEEEETTEEEES
T ss_pred CCCCCCCChhhCCHHHHHHHHHHhcCCccCChheeeeccCCCeeeEEEEEccCCCchhhhhhhhhccceeEEeeeeEEec
Confidence 57999999999999999999999999999999999999999999999999999999999975456799999999999999
Q ss_pred cccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHhhccccCC
Q 005321 348 NCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYDAFSKNIKLGIHED 427 (702)
Q Consensus 348 ~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~d~~~y~~f~~~~~~~lK~g~~eD 427 (702)
+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+|++|+++|++||++||.+||+|+++|
T Consensus 83 ~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la~d~e~Y~~f~~~fg~~lK~Gi~eD 162 (448)
T 3q6m_A 83 NCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHED 162 (448)
T ss_dssp CCTTSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHH
Q 005321 428 SQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQ 507 (702)
Q Consensus 428 ~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e~~~~~g~eVL~l~d~iDE~~l~~ 507 (702)
..||++|++||||+||.++++++||+||++||+++|+.|||++|+|++++++|||+|.|+++|||||||++||||+|+++
T Consensus 163 ~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~~ 242 (448)
T 3q6m_A 163 SQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQ 242 (448)
T ss_dssp GGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSGGGHHHHHHTCCEEEECSTHHHHHTTT
T ss_pred HHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhChHHHHHHHCCCEEEEecCchHHHHHHH
Confidence 99999999999999999777899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcceEeecccCCCCCcchHHHHhHHHHHHhHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCCCccHHHHH
Q 005321 508 LKEYDGKKLVSATKEGLKLEEDDEEKKKREEKKKSFENLCKTIKEILGDNVEKVVVSDRIVDSPCCLVTGEYGWSANMER 587 (702)
Q Consensus 508 l~~~~g~~~~~v~~~~l~l~~~~e~~~~~e~~~~~~~~L~~~~k~~L~~~V~~V~vS~rL~dsPa~lv~~e~g~s~~meR 587 (702)
|++|+|++|+||+++++++++.+++++..++.+++|++||+|||++||++|++|++|+||++||||||++++|||++|+|
T Consensus 243 L~ef~gk~~~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~Mer 322 (448)
T 3q6m_A 243 LKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMER 322 (448)
T ss_dssp CCEETTEEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHTGGGCSEEEECSSCSSSSEEEEECSSSCCHHHHH
T ss_pred HHhhCCceEEEecccccCcccchhhhhhHHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEeCCcchhHHHHH
Confidence 99999999999999999997766655555666778999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCcccccCCCCceEEECCCChHHHHHHhhhhcCCCchhHHHHHHHHHHhHHHhCCCCCCCHHHHHHHHHHHH
Q 005321 588 IMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDLVLLLYETALLTSGFSLDDPNTFAARIHRML 667 (702)
Q Consensus 588 ~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d~~~~~~~~~~~lLyd~All~~G~~i~d~~~f~~ri~~ll 667 (702)
||++|+.+++.+.+++.++|+|||||+||||++|.++...|++++.++++|++|||+|+|++|++++||+.|++|||+||
T Consensus 323 imkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~lLyd~AlL~~G~~l~DP~~f~~ri~~ll 402 (448)
T 3q6m_A 323 IMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMI 402 (448)
T ss_dssp HCCC--------------CEEEEECTTCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred HHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcccchhHHHHHHHHHHHhHHhcCCCCCCCHHHHHHHHHHHH
Confidence 99998876655555778999999999999999999988777677899999999999999999999999999999999999
Q ss_pred HhcCCCCcccccCCCC----CCCCCCCC-CCcCcccccCC
Q 005321 668 KLGLSIEEDETAGDDA----EMPPLEDE-GNEESKMEEVD 702 (702)
Q Consensus 668 ~~~l~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~ 702 (702)
.++||++.++..++++ +.+.|+++ +++++.|+++|
T Consensus 403 ~~~L~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (448)
T 3q6m_A 403 KLGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 442 (448)
T ss_dssp HHTTC-----------------------------------
T ss_pred HHhcCCCccccccccccccccCCCCCCCCCcchhhhhhhc
Confidence 9999999765544321 23456666 45678888765
No 6
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=2.7e-121 Score=1002.59 Aligned_cols=417 Identities=67% Similarity=1.121 Sum_probs=373.4
Q ss_pred eeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccceEEE
Q 005321 260 HEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLY 339 (702)
Q Consensus 260 ~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lY 339 (702)
.+|+++|+.+|||+|+|++||+++|.+|||+++++|++||+|+||++||+++|+||||||+.+||++|+++..+++|+||
T Consensus 11 ~~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~~~~~~~ikLY 90 (444)
T 3hjc_A 11 RENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRNNIKLY 90 (444)
T ss_dssp --------CCCGGGSCGGGCCHHHHHHHHHHTSSCCSCCSEEEEEEECSSSCEEEEEEECSSCCC----CCCCCCSEEEE
T ss_pred CCceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCccCCceeEEEEecccceeeEEEecCCCCCcchhhhhhhcCCeeEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999754567999999
Q ss_pred eccccccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHH
Q 005321 340 VRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYDAFSKN 419 (702)
Q Consensus 340 v~~v~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~d~~~y~~f~~~~~~~ 419 (702)
||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+|+++|++||++||.+
T Consensus 91 v~rVfI~D~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la~d~e~Y~kFw~~fg~~ 170 (444)
T 3hjc_A 91 VRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKN 170 (444)
T ss_dssp ETTEEEESCCGGGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred EeeeEeecchhhhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCC
Q 005321 420 IKLGIHEDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDA 499 (702)
Q Consensus 420 lK~g~~eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e~~~~~g~eVL~l~d~ 499 (702)
||+|+++|..||++|++||||+||+++++++||+||++||+++|+.|||++|+|++++++|||+|.|+++|||||||++|
T Consensus 171 lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~ 250 (444)
T 3hjc_A 171 IKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEP 250 (444)
T ss_dssp HHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCHHHHHTCGGGHHHHHHTCCEEEECSH
T ss_pred HhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCHHHHHhChHHHHHHhCCcEEEEeCCc
Confidence 99999999999999999999999997778999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhhccCcceEeecccCCCCCcchHHHHhHHHHHHhHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCC
Q 005321 500 IDEYAVGQLKEYDGKKLVSATKEGLKLEEDDEEKKKREEKKKSFENLCKTIKEILGDNVEKVVVSDRIVDSPCCLVTGEY 579 (702)
Q Consensus 500 iDE~~l~~l~~~~g~~~~~v~~~~l~l~~~~e~~~~~e~~~~~~~~L~~~~k~~L~~~V~~V~vS~rL~dsPa~lv~~e~ 579 (702)
|||+|+++|.+|+|++|++|+++++++++.+++++..++.+++|++||+|+|++|+++|++|++|+||++||||||++++
T Consensus 251 iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e~ 330 (444)
T 3hjc_A 251 IDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEF 330 (444)
T ss_dssp HHHHHHHHCCEETTEEEEETTBSSCCCCCCHHHHHHHHHHHHHTHHHHHHHHHHHGGGCSEEEECSSCSSSSEEEEBCSS
T ss_pred hHHHHHHHHHHhCCceEEEeccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEcCCc
Confidence 99999999999999999999999999877665555556677799999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHhccCCcccccCCCCceEEECCCChHHHHHHhhhhcCCCchhHHHHHHHHHHhHHHhCCCCCCCHHHH
Q 005321 580 GWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDLVLLLYETALLTSGFSLDDPNTF 659 (702)
Q Consensus 580 g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d~~~~~~~~~~~lLyd~All~~G~~i~d~~~f 659 (702)
|||++|+|||++|++.++.+.+++..+++|||||+||||++|.++...|++++.++++|++|||+|+|++|+.++||+.|
T Consensus 331 g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d~~~~~~~~l~~lLyd~AlL~~G~~ledp~~f 410 (444)
T 3hjc_A 331 GWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGY 410 (444)
T ss_dssp SBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred cccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCCCCcccHHHH
Confidence 99999999999998766555557789999999999999999999887776778999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcc
Q 005321 660 AARIHRMLKLGLSIEED 676 (702)
Q Consensus 660 ~~ri~~ll~~~l~~~~~ 676 (702)
++|+|+||.++||++++
T Consensus 411 ~~ri~~ll~~~l~~~~~ 427 (444)
T 3hjc_A 411 AERINRMIKLGLSLDEE 427 (444)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCCCcc
Confidence 99999999999999975
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-115 Score=954.78 Aligned_cols=404 Identities=70% Similarity=1.094 Sum_probs=381.8
Q ss_pred CCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccceEEEeccccccc
Q 005321 268 QKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMD 347 (702)
Q Consensus 268 ~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d 347 (702)
++|||+|+|++||+++|.+|||+++++|++||+|+||++||+++|+||||||+.+|+++|+++..+++|+||||||||+|
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI~d 80 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITD 80 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSSCCCCCCCEEEETTEEEES
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCCcCCeeEEEeccCCCcceeEEEEecCCCchhhhhhhhccCCeEEEEeeeEecC
Confidence 36999999999999999999999999999999999999999999999999999999999975555799999999999999
Q ss_pred cccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHhhccccCC
Q 005321 348 NCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYDAFSKNIKLGIHED 427 (702)
Q Consensus 348 ~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~d~~~y~~f~~~~~~~lK~g~~eD 427 (702)
+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+|+++|++||++||.+||+|+++|
T Consensus 81 ~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~~~e~y~kf~~~fg~~lK~G~~eD 160 (405)
T 2cge_A 81 EAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHED 160 (405)
T ss_dssp SCSSSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHhhhhhcchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHH
Q 005321 428 SQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQ 507 (702)
Q Consensus 428 ~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e~~~~~g~eVL~l~d~iDE~~l~~ 507 (702)
+.||++|++||||+||+++++++||+||++||+++|+.|||++|++++++++|||+|.|+++|||||||++||||+|+++
T Consensus 161 ~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~k~kG~EVL~l~d~iDe~~i~~ 240 (405)
T 2cge_A 161 TQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQ 240 (405)
T ss_dssp TTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCTTHHHHHHHTCCEEEECSHHHHHHHHH
T ss_pred HHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCEEEEecCchHHHHHHH
Confidence 99999999999999999766899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcceEeecccCCCCCcchHHHHhHHHHHHhHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCCCccHHHHH
Q 005321 508 LKEYDGKKLVSATKEGLKLEEDDEEKKKREEKKKSFENLCKTIKEILGDNVEKVVVSDRIVDSPCCLVTGEYGWSANMER 587 (702)
Q Consensus 508 l~~~~g~~~~~v~~~~l~l~~~~e~~~~~e~~~~~~~~L~~~~k~~L~~~V~~V~vS~rL~dsPa~lv~~e~g~s~~meR 587 (702)
|.+|+|++|++|+++ +++++.+++++..++.+++|++|++|||++|+++|.+|++|+||++||||+|++++|||++|+|
T Consensus 241 L~e~~gk~~~sV~~~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~mer 319 (405)
T 2cge_A 241 LKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMER 319 (405)
T ss_dssp HCBSSSBEEESSBCC-CCSSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEECSSCCSSSEEEEECSSSCCHHHHH
T ss_pred HHHhCCceeEEcccc-ccccccchhhhhhhHhHHHHHHHHHHHHHHhcCcceEEEEEeccCCCCeEEEeccccccHHHHH
Confidence 999999999999999 9887655555544566779999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCcccccCCCCceEEECCCChHHHHHHhhhhcC-CCchhHHHHHHHHHHhHHHhCCCCCCCHHHHHHHHHHH
Q 005321 588 IMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEVD-KNDKSVKDLVLLLYETALLTSGFSLDDPNTFAARIHRM 666 (702)
Q Consensus 588 ~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~~~~d-~~~~~~~~~~~lLyd~All~~G~~i~d~~~f~~ri~~l 666 (702)
||++|+++++.+.+++..+++|||||+||||++|..+...+ ++++.++++|++|||+|+|++|++++||+.|++|+|+|
T Consensus 320 ~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~dp~~f~~r~~~l 399 (405)
T 2cge_A 320 IMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRL 399 (405)
T ss_dssp HHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTGGGCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHH
T ss_pred HHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Confidence 99999877666666677899999999999999998876543 34578999999999999999999999999999999999
Q ss_pred HHhcCC
Q 005321 667 LKLGLS 672 (702)
Q Consensus 667 l~~~l~ 672 (702)
|.++||
T Consensus 400 l~~~l~ 405 (405)
T 2cge_A 400 ISLGLN 405 (405)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998775
No 8
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=2.9e-90 Score=715.45 Aligned_cols=288 Identities=71% Similarity=1.119 Sum_probs=242.8
Q ss_pred CCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccceEEEeccccccc
Q 005321 268 QKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMD 347 (702)
Q Consensus 268 ~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d 347 (702)
++|||+|+|++||+++|.+||++++++|++||+|+||++||+++|+||||||+++||++|.++..++||+||||||||+|
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~~~~~~~ikLYvrrVfI~d 80 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITD 80 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCCSCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSSCCCCCCCEEEETTEEEES
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCcccCeeEEEEeccCCceeEEEEEecCCCcchhhhhhhccCCeEEEEeeeEeec
Confidence 36999999999999999999999999999999999999999999999999999999999986555799999999999999
Q ss_pred cccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHhhccccCC
Q 005321 348 NCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYDAFSKNIKLGIHED 427 (702)
Q Consensus 348 ~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~d~~~y~~f~~~~~~~lK~g~~eD 427 (702)
+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+|+++|++||++||.+||+|+++|
T Consensus 81 ~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d~e~Y~kf~~~fg~~lK~Gi~eD 160 (288)
T 1hk7_A 81 EAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHED 160 (288)
T ss_dssp SCSSSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHH
Q 005321 428 SQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQ 507 (702)
Q Consensus 428 ~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e~~~~~g~eVL~l~d~iDE~~l~~ 507 (702)
..||++|++||||+||+++++++||+||++||+++|+.|||++|+|++++++|||+|.|+++|||||||++||||+||++
T Consensus 161 ~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~~i~~ 240 (288)
T 1hk7_A 161 TQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQ 240 (288)
T ss_dssp TTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHTTTCCCEEECSHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCHHHHHHHHCCCEEEEecCchHHHHHhh
Confidence 99999999999999998767899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcceEeecccCCCCCcchHHHHhHHHHHHhHHHHHHHHHHHhCC
Q 005321 508 LKEYDGKKLVSATKEGLKLEEDDEEKKKREEKKKSFENLCKTIKEILGD 556 (702)
Q Consensus 508 l~~~~g~~~~~v~~~~l~l~~~~e~~~~~e~~~~~~~~L~~~~k~~L~~ 556 (702)
|.+|+|++|+||+++ +++++.+++++..++.+++|++||+|||++||+
T Consensus 241 L~e~~gk~~~sv~k~-~~l~~~~eek~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 241 LKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp HCEETTEEEEETTTC----------------------------------
T ss_pred hhhcCCceeeecccc-ccccchhhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999998 888765544444455577899999999999975
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=4.3e-88 Score=703.77 Aligned_cols=289 Identities=42% Similarity=0.739 Sum_probs=246.8
Q ss_pred CCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccceEEEeccccccc
Q 005321 268 QKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMD 347 (702)
Q Consensus 268 ~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d 347 (702)
++|||+|+|++||+++|.+||++++++|++||+|+||++||+++|+||||||+.+|+++|+. ..+++|+||||||||+|
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~-~~~~~ikLYvrrVfI~D 80 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR-DHKHGLKLYVQRVFIMD 80 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCCSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTST-TCCCSEEEEETTEEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCccCcceeEEeccccccceeEEEEecCCCCchhhhh-hccCCeEEEEeceEeec
Confidence 47999999999999999999999999999999999999999999999999999999999873 35789999999999999
Q ss_pred cccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHhHHhhccccC
Q 005321 348 NCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAE-NKEDYAKFYDAFSKNIKLGIHE 426 (702)
Q Consensus 348 ~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~-d~~~y~~f~~~~~~~lK~g~~e 426 (702)
+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+ ||++|++||++||.+||+|+++
T Consensus 81 ~~eeLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~~d~e~Y~kF~~~fg~~lK~Gi~e 160 (303)
T 2gq0_A 81 DAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAE 160 (303)
T ss_dssp EEGGGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTHHHH
T ss_pred chhhhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred ChhhHHHHhchhcceecCCC--CcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHH
Q 005321 427 DSQNRAKLADLLRFHSTKSG--DEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYA 504 (702)
Q Consensus 427 D~~~~~~l~~lLrf~ts~~~--~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e~~~~~g~eVL~l~d~iDE~~ 504 (702)
|..|+++|++||||+||.++ ++++||+||++||+++|+.|||++|++++++++|||+|.|+++|||||||++||||+|
T Consensus 161 D~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~ 240 (303)
T 2gq0_A 161 DFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWM 240 (303)
T ss_dssp CGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCEEEECSTTHHHH
T ss_pred CHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhcChHHHHHHHCCCeEEEeCchhHHHH
Confidence 99999999999999999865 4799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCcceEeecccCCCCCcchHHHHhHHHHHHhHHHHHHHHHHHhCCcee--EEEEeecCCCCCeEEEeC
Q 005321 505 VGQLKEYDGKKLVSATKEGLKLEEDDEEKKKREEKKKSFENLCKTIKEILGDNVE--KVVVSDRIVDSPCCLVTG 577 (702)
Q Consensus 505 l~~l~~~~g~~~~~v~~~~l~l~~~~e~~~~~e~~~~~~~~L~~~~k~~L~~~V~--~V~vS~rL~dsPa~lv~~ 577 (702)
|++|++|+|++|++|+++++++++.+ ++.||.+|. +|.+|+||++||||+++.
T Consensus 241 i~~L~e~~gk~f~sV~k~~l~l~~~~--------------------~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 295 (303)
T 2gq0_A 241 MNYLTEFDGKPFQSVSKVDESLEKLA--------------------DGDLGTLVPRGSMAISDPNSSSVDKLAAA 295 (303)
T ss_dssp TTTCCEETTEEEEETTC----------------------------------------------------------
T ss_pred HHHHHhcCCcceEEeeccccCccccc--------------------hhhhccccccCCccccCcCCcchHHHHHH
Confidence 99999999999999999999875322 355677888 899999999999999763
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=3.3e-86 Score=679.80 Aligned_cols=263 Identities=73% Similarity=1.233 Sum_probs=249.7
Q ss_pred ecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccceEEEeccccc
Q 005321 266 NKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFI 345 (702)
Q Consensus 266 n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I 345 (702)
|+++|||+|+|++||+++|.+|||+++++|++||+|+|+++||+++|+||||||+++||++|+++..+++|+||||||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYv~rVfI 80 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFI 80 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC--------CCCEEEEETTEEE
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCccCchheeeecccCCeeEEEEEEccCCCchhhhhhhhhcCCeeEEEEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999755567999999999999
Q ss_pred cccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHhhcccc
Q 005321 346 MDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYDAFSKNIKLGIH 425 (702)
Q Consensus 346 ~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~d~~~y~~f~~~~~~~lK~g~~ 425 (702)
+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+|+++|++||++||.+||+|++
T Consensus 81 ~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d~e~Y~~f~~~fg~~lK~G~~ 160 (268)
T 3pry_A 81 MDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIH 160 (268)
T ss_dssp ESCCGGGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHH
Q 005321 426 EDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYAV 505 (702)
Q Consensus 426 eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e~~~~~g~eVL~l~d~iDE~~l 505 (702)
+|..||++|++||||+||.++++++||+||++||+++|+.|||++|+|++++++|||+|.|+++|||||||++||||+|+
T Consensus 161 eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~sp~~E~~k~kg~EVL~l~d~iDe~~i 240 (268)
T 3pry_A 161 EDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCV 240 (268)
T ss_dssp HCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHTCHHHHHHHTTTCCEEECCSTTHHHHH
T ss_pred CCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHhChHHHHHHHcCceEEEeCCchHHHHH
Confidence 99999999999999999997667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCcceEeecccCCCCCc
Q 005321 506 GQLKEYDGKKLVSATKEGLKLEE 528 (702)
Q Consensus 506 ~~l~~~~g~~~~~v~~~~l~l~~ 528 (702)
++|++|+|++|+||+++|+++++
T Consensus 241 ~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 241 QQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp HHHCEETTEEEEETTCSSCCCCC
T ss_pred HHHHhcCCceeeecccccCCCcc
Confidence 99999999999999999998864
No 11
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=6.8e-86 Score=675.67 Aligned_cols=257 Identities=72% Similarity=1.140 Sum_probs=242.5
Q ss_pred ecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCCCchhhhhcccceEEEeccccc
Q 005321 266 NKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFI 345 (702)
Q Consensus 266 n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I 345 (702)
|+.+|||+|+|++||+++|.+||++++++|++||+|+|+++||+++|+||||||+++|+++|+++..+++|+||||||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI 80 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFI 80 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC----CCEEEEETTEEE
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCccCCeeEEEeeccCcceeEEEEEecCCCchhhhhhhhccCCeEEEEeeeEe
Confidence 78899999999999999999999999999999999999999999999999999999999999865557999999999999
Q ss_pred cccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHhhcccc
Q 005321 346 MDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYDAFSKNIKLGIH 425 (702)
Q Consensus 346 ~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~d~~~y~~f~~~~~~~lK~g~~ 425 (702)
+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+|+++|++||++||.+||+|++
T Consensus 81 ~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~d~e~y~~f~~~fg~~lK~G~~ 160 (260)
T 1usu_A 81 TDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVH 160 (260)
T ss_dssp ESCCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhhcchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHH
Q 005321 426 EDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYAV 505 (702)
Q Consensus 426 eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e~~~~~g~eVL~l~d~iDE~~l 505 (702)
+|..|+++|++||||+||+++++++||+||++||+++|+.|||++|++++++++|||+|.|+++|||||||++||||+||
T Consensus 161 eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~~i 240 (260)
T 1usu_A 161 EDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAF 240 (260)
T ss_dssp HCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHHHHHH
T ss_pred cCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHH
Confidence 99999999999999999987667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCcceEeeccc
Q 005321 506 GQLKEYDGKKLVSATKE 522 (702)
Q Consensus 506 ~~l~~~~g~~~~~v~~~ 522 (702)
++|++|+|++|+||+++
T Consensus 241 ~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 241 TQLKEFEGKTLVDITKD 257 (260)
T ss_dssp HHHCEETTEEEEETTCC
T ss_pred HHHHhhCCceEEecccc
Confidence 99999999999999998
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=5.7e-83 Score=658.24 Aligned_cols=258 Identities=42% Similarity=0.798 Sum_probs=231.7
Q ss_pred ecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccceeEEEEEEEeeCCCCCCchhh--hhcccceEEEeccc
Q 005321 266 NKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDT--RKKLNNIKLYVRRV 343 (702)
Q Consensus 266 n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~--~~~~~~i~lYv~~v 343 (702)
|+.+|||+|++++||+++|.+||++++++|++||+|+|+++||+++|+||||||+++||++|.+ +..+++|+||||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvrrV 80 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVKRV 80 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCCSCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEETTE
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCccCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEeee
Confidence 7889999999999999999999999999999999999999999999999999999999998652 34478999999999
Q ss_pred cccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHhHHhhc
Q 005321 344 FIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAE-NKEDYAKFYDAFSKNIKL 422 (702)
Q Consensus 344 ~I~d~~~~llP~~l~Fv~gvVDs~dLplnvSRE~lq~~~~l~~i~~~l~~k~l~~l~~la~-d~~~y~~f~~~~~~~lK~ 422 (702)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+ ||++|++||++||.+||+
T Consensus 81 fI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~~d~e~y~kf~~~fg~~lK~ 160 (263)
T 1y6z_A 81 FINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKETGGDKWTKFLNTFGKYLKI 160 (263)
T ss_dssp EEESCGGGGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred EeecchhhhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999998 799999999999999999
Q ss_pred cccCChhhHHHHhchhcceecCCCCcccCHHHHHHhhccCCceEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchH
Q 005321 423 GIHEDSQNRAKLADLLRFHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDE 502 (702)
Q Consensus 423 g~~eD~~~~~~l~~lLrf~ts~~~~~~~SL~eYv~rm~~~Q~~IyY~~~~~~~~~~~sp~~e~~~~~g~eVL~l~d~iDE 502 (702)
|+++|..|+++|++||||+||.++++++||+||++||+++|+.|||++|++++++++|||+|.|+++|+|||+|++||||
T Consensus 161 G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~E~~~~kg~EVL~l~~~iDe 240 (263)
T 1y6z_A 161 GVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPIDE 240 (263)
T ss_dssp HHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCCEEECSHHHH
T ss_pred ccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCcHHHHHHhCCCeEEEeCCcHHH
Confidence 99999999999999999999987667999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh--hhccCcceEeecccC
Q 005321 503 YAVGQL--KEYDGKKLVSATKEG 523 (702)
Q Consensus 503 ~~l~~l--~~~~g~~~~~v~~~~ 523 (702)
+||++| ++|+|++|+||++++
T Consensus 241 ~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 241 FCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp HHHHHHHHHCBTTBCEEETTCC-
T ss_pred HHHHHhhhhccCCceEEecCCCC
Confidence 999999 599999999999874
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=9.5e-61 Score=496.04 Aligned_cols=257 Identities=49% Similarity=0.834 Sum_probs=230.9
Q ss_pred ccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005321 9 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGV 88 (702)
Q Consensus 9 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 88 (702)
.+++.||+|+++||++|+++||||+.+|||||||||+||++++||+++++|......+.+.|+|.+++++++|+|.|||+
T Consensus 23 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGi 102 (281)
T 3peh_A 23 MESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGI 102 (281)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred cceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCC
Confidence 48999999999999999999999999999999999999999999999999988888888999999999899999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhc-CCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeC
Q 005321 89 GMTKADLVNNLGTIARSGTKEFMEALQA-GADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRD 167 (702)
Q Consensus 89 GMt~~dl~~~l~~Ia~S~~~~f~~~~~~-~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~ 167 (702)
|||+++|.++|++||+||++.|+++++. +.+..+||||||||||+||||++|+|+|+++++.++.|++.+++.|+|.+.
T Consensus 103 GMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~fti~~~ 182 (281)
T 3peh_A 103 GMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKFTIYKD 182 (281)
T ss_dssp CCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCEEEEEC
T ss_pred CCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCccEEEEEc
Confidence 9999999999999999999999999876 457789999999999999999999999999877899999999999999986
Q ss_pred CCCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhh-hcccCCccccchhh
Q 005321 168 VSGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETK-EEEEGDVEDVDEDK 246 (702)
Q Consensus 168 ~~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 246 (702)
+.++..++||+|+|||+++..+|++.++|+++|++||+||+|||+++.+++.+.+|+++++++++ +++++++++++++
T Consensus 183 ~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~~~~~~~~~~~~e~~~~~- 261 (281)
T 3peh_A 183 PRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKDMVNDPNYDSVKVEETD- 261 (281)
T ss_dssp TTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHHHHTTCTTSSEEEECCCC-
T ss_pred CCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhhhcccccccccccccccc-
Confidence 54456799999999999999999999999999999999999999999998888888877654432 2345555555544
Q ss_pred hhhccccceeeeeeeeEEee
Q 005321 247 EKKGKKKKVKEVTHEWQLIN 266 (702)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~n 266 (702)
++++|+|++++++++|+.+|
T Consensus 262 ~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 262 DPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp CTTCCEEEEEEEEEEEEECC
T ss_pred ccccCCcceEEEEEEeEecC
Confidence 24556788899999999998
No 14
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=1.8e-55 Score=457.97 Aligned_cols=257 Identities=55% Similarity=0.895 Sum_probs=203.5
Q ss_pred ccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005321 9 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGV 88 (702)
Q Consensus 9 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 88 (702)
.+++.||+++++||++|+++||+|+.+|||||||||+||++++|+++++++......+.+.|+|.++.+..+|+|.|||+
T Consensus 5 ~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGi 84 (269)
T 1qy5_A 5 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 84 (269)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999988777788999999998889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcC-----CCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEE
Q 005321 89 GMTKADLVNNLGTIARSGTKEFMEALQAG-----ADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFT 163 (702)
Q Consensus 89 GMt~~dl~~~l~~Ia~S~~~~f~~~~~~~-----~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~ 163 (702)
|||+++|.++|++||+||++.|+++++.+ .+...||||||||||+||||++|+|.|++.++.++.|++++ +.|+
T Consensus 85 GMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~g-g~~~ 163 (269)
T 1qy5_A 85 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFS 163 (269)
T ss_dssp CCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECS-SCEE
T ss_pred CCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeC-CEEE
Confidence 99999999999999999999999888753 56789999999999999999999999999877899999999 8999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCchhhhhhh--hcccCCccc
Q 005321 164 VTRDVSGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEETK--EEEEGDVED 241 (702)
Q Consensus 164 i~~~~~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 241 (702)
|.+.+.+...++||+|+|+|+++..+|++.++|+++|++||.|++|||+++.+++.+++|+++++++++ ++++++.++
T Consensus 164 i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (269)
T 1qy5_A 164 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAA 243 (269)
T ss_dssp EEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC-------------------------
T ss_pred EEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhcccccccccc
Confidence 987532235689999999999999999999999999999999999999999988777777666543221 111122222
Q ss_pred cchhhh-hhccccceeeeeeeeEEee
Q 005321 242 VDEDKE-KKGKKKKVKEVTHEWQLIN 266 (702)
Q Consensus 242 ~~~~~~-~~~~~~~~~~~~~~~~~~n 266 (702)
++++++ +++++|++++++++|+.+|
T Consensus 244 ~~~~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 244 VEEEEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp ----------------CCCEEEEECC
T ss_pred cccccccccccCCceEEEEeeeEecC
Confidence 222222 3466788888899999998
No 15
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=4.3e-55 Score=443.95 Aligned_cols=205 Identities=50% Similarity=0.866 Sum_probs=186.9
Q ss_pred ccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCcc--------------------------
Q 005321 9 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKL-------------------------- 62 (702)
Q Consensus 9 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~-------------------------- 62 (702)
.|+|.||+|+++||+||+++||||+++|||||||||+|||+|+| ++++++.++
T Consensus 24 ~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (272)
T 3ied_A 24 VEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVNES 102 (272)
T ss_dssp CEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC---------------------
T ss_pred cceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhccccccccccccccccccccccccc
Confidence 38999999999999999999999999999999999999999999 778765432
Q ss_pred -----------CCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcC-CCCcccccccccc
Q 005321 63 -----------DAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAG-ADVSMIGQFGVGF 130 (702)
Q Consensus 63 -----------~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~-~~~~~iG~fGIGf 130 (702)
....++.|+|.+|+++++|+|.|||+|||++||.++|++||+||++.|+++++.+ .+..+||||||||
T Consensus 103 ~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGF 182 (272)
T 3ied_A 103 TDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGF 182 (272)
T ss_dssp -----------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGG
T ss_pred cccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCccccee
Confidence 2234679999999999999999999999999999999999999999999998865 5788999999999
Q ss_pred eeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCC-----CCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcc
Q 005321 131 YSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDV-----SGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSE 205 (702)
Q Consensus 131 ~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~-----~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~ 205 (702)
||+||||++|+|+|| +++.+|.|+|++++.|+|.+++ .++..++||+|+||||+++.+|++.++|+++|++||.
T Consensus 183 ySaFmVAdkV~V~Sk-~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys~ 261 (272)
T 3ied_A 183 YSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYSE 261 (272)
T ss_dssp GGGGGTEEEEEEEEE-SSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCT
T ss_pred heeeccCCEEEEEEc-CCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHHh
Confidence 999999999999999 6778999999999999999864 2346799999999999999999999999999999999
Q ss_pred cCccceEEec
Q 005321 206 FISYPIYLWT 215 (702)
Q Consensus 206 fl~~PI~~~~ 215 (702)
|++|||+++.
T Consensus 262 fi~~PI~l~~ 271 (272)
T 3ied_A 262 FIKFPIEIWS 271 (272)
T ss_dssp TCCSCEEECC
T ss_pred CCCCCeEEEe
Confidence 9999999974
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=8e-54 Score=436.07 Aligned_cols=208 Identities=77% Similarity=1.171 Sum_probs=195.6
Q ss_pred ccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005321 9 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGV 88 (702)
Q Consensus 9 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 88 (702)
.+++.||+|+++||++|+++||||+++|||||||||+||++|+|+.+++++......+++.|+|.+|+++++|+|.|||+
T Consensus 16 ~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGi 95 (239)
T 3nmq_A 16 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGI 95 (239)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCC
Confidence 48999999999999999999999999999999999999999999999999988777788999999999899999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCC
Q 005321 89 GMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDV 168 (702)
Q Consensus 89 GMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~ 168 (702)
|||++||.++|++||+||++.|+++++.+.+...||||||||||+||||++|+|.|+++++.++.|++++++.|+|.+.+
T Consensus 96 GMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~fti~~~~ 175 (239)
T 3nmq_A 96 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADH 175 (239)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEEEEEECC
T ss_pred CCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcEEEEecC
Confidence 99999999999999999999999988866678899999999999999999999999998788999999999999999853
Q ss_pred CCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEeccc
Q 005321 169 SGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEK 217 (702)
Q Consensus 169 ~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~ 217 (702)
+++..+||+|+|||+++..+|+++++|+++|++||+|++|||+++.++
T Consensus 176 -~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~~ 223 (239)
T 3nmq_A 176 -GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK 223 (239)
T ss_dssp -SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCCS
T ss_pred -CCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeeee
Confidence 345689999999999999999999999999999999999999998755
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=2.3e-50 Score=414.58 Aligned_cols=217 Identities=78% Similarity=1.177 Sum_probs=193.6
Q ss_pred ccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005321 9 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGV 88 (702)
Q Consensus 9 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 88 (702)
.|++.||+|+++|+++|+++||+|+.+|||||||||+||++++||.+++++......+.+.|+|.++.+..+|+|.|||+
T Consensus 37 ~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~ 116 (256)
T 3o0i_A 37 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGI 116 (256)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCC
Confidence 48999999999999999999999999999999999999999999999999988777788999999998889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCC
Q 005321 89 GMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDV 168 (702)
Q Consensus 89 GMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~ 168 (702)
||+++||..+|++||+|+++.|.+.++.+.+...||+||+||+|+|+||++|+|+||+.++.++.|++.+++.|++.+.+
T Consensus 117 GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~v~~~~ 196 (256)
T 3o0i_A 117 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT 196 (256)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEEECC
T ss_pred CcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceEEEeeCC
Confidence 99999999999999999999998878654567899999999999999999999999988778999999999999999853
Q ss_pred CCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccCch
Q 005321 169 SGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVSDD 226 (702)
Q Consensus 169 ~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~~~ 226 (702)
+...++||+|+|+||.+..+|++.++|+++|++||+||++||+++.+++.+++++++
T Consensus 197 -~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~~~ 253 (256)
T 3o0i_A 197 -GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDD 253 (256)
T ss_dssp -SSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEECCC----------
T ss_pred -CCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEeeeeeecccCCCc
Confidence 245689999999999999999999999999999999999999999877655555443
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=2.5e-49 Score=402.76 Aligned_cols=215 Identities=78% Similarity=1.173 Sum_probs=191.9
Q ss_pred ccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005321 9 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGV 88 (702)
Q Consensus 9 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 88 (702)
.+++.||+|+++|+++|+++||+++.+|||||||||+||++++|+.+++++......+.+.|+|.++.+..+|+|.|||+
T Consensus 9 ~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~ 88 (228)
T 3t0h_A 9 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGI 88 (228)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCC
Confidence 48999999999999999999999999999999999999999999999999887777778899999998889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCC
Q 005321 89 GMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDV 168 (702)
Q Consensus 89 GMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~ 168 (702)
||++++|..+|++||+|+++.|.+.++.+.+...||+||+||+|+|+||++|+|+||+.++.++.|++.+++.|++.+.+
T Consensus 89 GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~v~~~~ 168 (228)
T 3t0h_A 89 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT 168 (228)
T ss_dssp CCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEEECC
T ss_pred CCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEEEeecC
Confidence 99999999999999999999888777644567899999999999999999999999987778999999999999998853
Q ss_pred CCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccccccccC
Q 005321 169 SGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEVS 224 (702)
Q Consensus 169 ~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~~~~~~ 224 (702)
+...++||+|+|+||++..+|++.++|+++|++||.||++||+++.+++.+++++
T Consensus 169 -~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~ 223 (228)
T 3t0h_A 169 -GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVS 223 (228)
T ss_dssp -SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC--------
T ss_pred -CCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCC
Confidence 2356899999999999999999999999999999999999999988765555444
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=2.9e-48 Score=398.07 Aligned_cols=208 Identities=58% Similarity=0.954 Sum_probs=176.9
Q ss_pred cccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCC
Q 005321 8 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSG 87 (702)
Q Consensus 8 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 87 (702)
..+++.||+++++|+++|+++||++|.+|||||||||+||++++|+++++++.+.....++.|+|.++.++.+|+|.|||
T Consensus 8 ~~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG 87 (236)
T 2gqp_A 8 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 87 (236)
T ss_dssp TTTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECC
Confidence 34899999999999999999999999999999999999999999999999988777777789999998888999999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHHhcC-----CCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceE
Q 005321 88 VGMTKADLVNNLGTIARSGTKEFMEALQAG-----ADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSF 162 (702)
Q Consensus 88 iGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~-----~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~ 162 (702)
+||+++||.++|++||+||++.|+++++.. .+...||+|||||||+|++|++|+|.|++.++.++.|++++ +.|
T Consensus 88 ~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~g-g~~ 166 (236)
T 2gqp_A 88 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEF 166 (236)
T ss_dssp CCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESS-SCE
T ss_pred cCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeC-CEE
Confidence 999999999999999999999998877653 46679999999999999999999999998766799999998 899
Q ss_pred EEEeCCCCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecc
Q 005321 163 TVTRDVSGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTE 216 (702)
Q Consensus 163 ~i~~~~~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~ 216 (702)
++.+.+.+...++||+|+|+|+++..+|++.++|+++|++||.|++|||+++++
T Consensus 167 ~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~ 220 (236)
T 2gqp_A 167 SVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSS 220 (236)
T ss_dssp EEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred EEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeee
Confidence 998753223468999999999999999999999999999999999999999764
No 20
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=2.6e-45 Score=372.95 Aligned_cols=209 Identities=69% Similarity=1.084 Sum_probs=191.0
Q ss_pred cccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCC
Q 005321 10 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVG 89 (702)
Q Consensus 10 e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiG 89 (702)
|++.||+++++|+++|+++||+++.+|||||||||+||++++|+.+++++......+.+.|+|..+.+..+|+|.|||+|
T Consensus 4 ~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~G 83 (220)
T 2wer_A 4 ETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIG 83 (220)
T ss_dssp EEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCC
T ss_pred cceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCC
Confidence 79999999999999999999999999999999999999999999999998776666778899988877789999999999
Q ss_pred CCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCCC
Q 005321 90 MTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVS 169 (702)
Q Consensus 90 Mt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~ 169 (702)
|++++|..+|++||+||++.|+++++...+...||+|||||||+|++|++|+|.|++.++.++.|++.+++.|++.+.+.
T Consensus 84 Ms~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (220)
T 2wer_A 84 MTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEV 163 (220)
T ss_dssp CCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEECSS
T ss_pred CCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeecccC
Confidence 99999999999999999999988887656778999999999999999999999999877779999999999999987532
Q ss_pred CCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEecccc
Q 005321 170 GEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKT 218 (702)
Q Consensus 170 ~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~ 218 (702)
+...++||+|+|+|+++..+|++.++|+++|++||.|+++||+++.+++
T Consensus 164 ~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~ 212 (220)
T 2wer_A 164 NERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKE 212 (220)
T ss_dssp SCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCCCC
T ss_pred CCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 2356899999999999989999999999999999999999999987543
No 21
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=2.6e-45 Score=381.07 Aligned_cols=210 Identities=78% Similarity=1.175 Sum_probs=190.7
Q ss_pred ccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005321 9 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGV 88 (702)
Q Consensus 9 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 88 (702)
.+++.||+++++|+++|+++||++|.+|||||||||+||++++|+..++++........+.|+|..+.+..+|+|.|||+
T Consensus 45 ~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~ 124 (264)
T 1yc1_A 45 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGI 124 (264)
T ss_dssp EEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCc
Confidence 37899999999999999999999999999999999999999999999988877666677889998887788999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCC
Q 005321 89 GMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDV 168 (702)
Q Consensus 89 GMt~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~ 168 (702)
||+++||..+|++||+|+++.|+++++...+...||+|||||||+|++|++|+|.|++.++.++.|++.+++.|++.+.+
T Consensus 125 GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~ 204 (264)
T 1yc1_A 125 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT 204 (264)
T ss_dssp CCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEEECC
T ss_pred CCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEeecC
Confidence 99999999999999999999998888755567899999999999999999999999987777899999998999998753
Q ss_pred CCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEeccccc
Q 005321 169 SGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWTEKTT 219 (702)
Q Consensus 169 ~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~~~~~ 219 (702)
+...++||+|+|+|+++..+|++.++|+++|++||.|+++||+++.+++.
T Consensus 205 -~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~ 254 (264)
T 1yc1_A 205 -GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER 254 (264)
T ss_dssp -SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECCCC--
T ss_pred -CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEeecccc
Confidence 23468999999999999999999999999999999999999999886543
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=4.8e-41 Score=344.54 Aligned_cols=205 Identities=47% Similarity=0.788 Sum_probs=183.5
Q ss_pred cccccchhhcHHHHHHHHHHhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCC
Q 005321 8 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSG 87 (702)
Q Consensus 8 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 87 (702)
..|++.||+++++|+++|+++||++|.+|||||||||+||++++|+..+.++.+......+.|+|.++.++..|+|.|||
T Consensus 23 ~~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG 102 (235)
T 2ior_A 23 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG 102 (235)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred ccccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECC
Confidence 44899999999999999999999999999999999999999999999998887766666788999888888899999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHHhcC--CCCcccccccccceeeeeecceEEEEeecCC---CceEEEEEccCceE
Q 005321 88 VGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAEKVIVTTKHND---DEQYVWESQAGGSF 162 (702)
Q Consensus 88 iGMt~~dl~~~l~~Ia~S~~~~f~~~~~~~--~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~---~~~~~w~~~~~~~~ 162 (702)
+||+++||..+|++||+|+++.|.++++.. .+...+|+||+||+|+|++|++|+|.|++.+ ..++.|.+++++.|
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~ 182 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY 182 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEE
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcE
Confidence 999999999999999999998887665421 2356899999999999999999999999864 46899999998999
Q ss_pred EEEeCCCCCCCCCceEEEEEeccchhhhhcHHHHHHHHHHhcccCccceEEec
Q 005321 163 TVTRDVSGEPLGRGTKITLFLKEDQCEYLEERRIKDLVKKHSEFISYPIYLWT 215 (702)
Q Consensus 163 ~i~~~~~~~~~~~GT~I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~~PI~~~~ 215 (702)
++.+. ...++||+|+|+|+++..+|++.++|+++|++||.|+++||+++.
T Consensus 183 ~i~~~---~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 183 TVADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp EEEEE---CCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred EEeeC---CCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 99873 245799999999999889999999999999999999999999974
No 23
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=99.97 E-value=3.1e-32 Score=251.38 Aligned_cols=114 Identities=26% Similarity=0.475 Sum_probs=104.7
Q ss_pred HHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhccCCcccccCCCCceEEECCCChHHHHHHhh
Q 005321 545 NLCKTIKEILGDNVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKR 624 (702)
Q Consensus 545 ~L~~~~k~~L~~~V~~V~vS~rL~dsPa~lv~~e~g~s~~meR~mkaq~~~~~~~~~~~~~k~~LEINp~HPLIk~L~~~ 624 (702)
.+++|+|++||++|.+|++|+||++||||||++++|||++|+|||++|++. ++..+++|||||+||||++|.+.
T Consensus 12 ~~~~~~K~~L~dkV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~------~~~~k~~LEINp~HplIk~L~~~ 85 (126)
T 1sf8_A 12 SFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQK------VPEVKYIFELNPDHVLVKRAADT 85 (126)
T ss_dssp CHHHHHHHHHGGGSSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTTSC------CCCCCCEEEECTTSHHHHHHHHC
T ss_pred HHHHHHHHHhcCcccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhccc------cccCCeeeeECCCCHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999988532 34688999999999999999764
Q ss_pred hhcCCCchhHHHHHHHHHHhHHHhCCCCCCCHHHHHHHHHHHHH
Q 005321 625 AEVDKNDKSVKDLVLLLYETALLTSGFSLDDPNTFAARIHRMLK 668 (702)
Q Consensus 625 ~~~d~~~~~~~~~~~lLyd~All~~G~~i~d~~~f~~ri~~ll~ 668 (702)
. +++.+++++++|||+|+|++|+.++||+.|++|+|+||.
T Consensus 86 ~----~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 86 E----DEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp C----SHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred c----ChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 2 356799999999999999999999999999999999985
No 24
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.86 E-value=2.3e-21 Score=208.37 Aligned_cols=276 Identities=16% Similarity=0.235 Sum_probs=177.8
Q ss_pred HhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 005321 27 NTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN-KTLSIIDSGVGMTKADLVNNLGTIARS 105 (702)
Q Consensus 27 ~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~l~~Ia~S 105 (702)
.....++..+|+|||+||+||++ ..|.|.++.++ ..|+|.|||+||+.+++...+.++++|
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a------------------~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 80 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGA------------------TRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTC------------------SEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCS
T ss_pred CCchhCHHHHHHHHHHHHHHCCC------------------CeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccccc
Confidence 44567899999999999999985 25666655444 689999999999999999999999877
Q ss_pred CchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCC-ceEEEEEccCc-eEEEEeCCCCCCCCCceEEEEE-
Q 005321 106 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDD-EQYVWESQAGG-SFTVTRDVSGEPLGRGTKITLF- 182 (702)
Q Consensus 106 ~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~-~~~~w~~~~~~-~~~i~~~~~~~~~~~GT~I~L~- 182 (702)
....+ +.+ .....+|++|+|+.|+++++ +++|+|+..++ .+|.|...|+. ...+.+. ..++||+|++.
T Consensus 81 K~~~~-~d~---~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~GT~V~v~~ 151 (333)
T 1b63_A 81 KIASL-DDL---EAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPA----AHPVGTTLEVLD 151 (333)
T ss_dssp SCCSH-HHH---HTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEE----CCCSEEEEEEES
T ss_pred Ccccc-chh---hhccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeecc----cCCCCCEEEEec
Confidence 32211 111 12356899999999999998 89999998653 57888776654 4555542 34799999997
Q ss_pred -----------eccchhhhhcHHHHHHHHHHhcccCccc-eEEecccccccccCchhhhhhhhcccCCccccchhhhhhc
Q 005321 183 -----------LKEDQCEYLEERRIKDLVKKHSEFISYP-IYLWTEKTTEKEVSDDEEEETKEEEEGDVEDVDEDKEKKG 250 (702)
Q Consensus 183 -----------lk~~~~e~~~~~~i~~ii~~ys~fl~~P-I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (702)
++....+| .+|.+++++|+.. +| |.+
T Consensus 152 Lf~n~P~r~kflk~~~~e~---~~i~~~~~~~al~--~p~v~~------------------------------------- 189 (333)
T 1b63_A 152 LFYNTPARRKFLRTEKTEF---NHIDEIIRRIALA--RFDVTI------------------------------------- 189 (333)
T ss_dssp TTTTCHHHHHTCCCHHHHH---HHHHHHHHHHHHH--CTTCEE-------------------------------------
T ss_pred ccccchhhhhhhccHHHHH---HHHHHHHHHHhcc--CCCcEE-------------------------------------
Confidence 23222333 6899999999973 44 443
Q ss_pred cccceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhc-CcccccceeeeeccceeEEEEEEEeeCCCCCCchhh
Q 005321 251 KKKKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTN-DWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDT 329 (702)
Q Consensus 251 ~~~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~-~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~ 329 (702)
.+.++++++|..++.. ....+.++...+++ .+...+..++...++ +.+.|++..|...
T Consensus 190 ------------~l~~ng~~~~~~~~~~-~~~~~~~~i~~i~G~~~~~~li~i~~~~~~-~~v~G~i~~p~~~------- 248 (333)
T 1b63_A 190 ------------NLSHNGKIVRQYRAVP-EGGQKERRLGAICGTAFLEQALAIEWQHGD-LTLRGWVADPNHT------- 248 (333)
T ss_dssp ------------EEEETTEEEEEECCCC-TTCCTHHHHHHHHCHHHHHHEEEEEEEETT-EEEEEEEECGGGC-------
T ss_pred ------------EEEECCEEEEecCCCC-CCchHHHHHHHHhChhhHhheEEEEecCCC-EEEEEEEEcCccc-------
Confidence 2222333444433210 11122333444433 333445555555544 8899988888743
Q ss_pred hhc-ccceEEEecccccccc---------cccccccc---ccceeeeecCCCCCCccc---hhhhc--cchHHHHHHHHH
Q 005321 330 RKK-LNNIKLYVRRVFIMDN---------CEELIPEY---LGFVKGVVDSDDLPLNIS---RETLQ--QNKILKVIRKNL 391 (702)
Q Consensus 330 ~~~-~~~i~lYv~~v~I~d~---------~~~llP~~---l~Fv~gvVDs~dLplnvS---RE~lq--~~~~l~~i~~~l 391 (702)
+.. +..+.+|||+++|.+. ...++|.- ..++..-+|.+.+-.||. ||..- +..++..|++.|
T Consensus 249 ~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~~~~v~~~i~~~i 328 (333)
T 1b63_A 249 TPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGV 328 (333)
T ss_dssp CTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTHHHHHHHHHHHH
T ss_pred cCCCCCcEEEEECCEEecCHHHHHHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEEEeCCHHHHHHHHHHHH
Confidence 223 4679999999999885 22445541 235666777777777873 34332 223445555444
Q ss_pred H
Q 005321 392 V 392 (702)
Q Consensus 392 ~ 392 (702)
.
T Consensus 329 ~ 329 (333)
T 1b63_A 329 L 329 (333)
T ss_dssp H
T ss_pred H
Confidence 3
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.80 E-value=2.4e-19 Score=194.56 Aligned_cols=170 Identities=18% Similarity=0.179 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHhcCCC-----chhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcC-CCCEEEEEeCCCCC
Q 005321 17 EINQLLSLIINTFYSN-----KEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDK-ANKTLSIIDSGVGM 90 (702)
Q Consensus 17 e~~~ll~ll~~~LYs~-----~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGM 90 (702)
-++.|.+.+++.|+++ +..+|+|||+||+||++ ..|.|.+.. +...|+|.|||+||
T Consensus 14 ~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a------------------~~I~I~i~~~~~~~I~V~DnG~Gi 75 (365)
T 1h7s_A 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGA------------------TNIDLKLKDYGVDLIEVSDNGCGV 75 (365)
T ss_dssp ---------------CEEECCHHHHHHHHHHHHHHTTC------------------SEEEEEEEGGGTSEEEEEECSCCC
T ss_pred hhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCC------------------CEEEEEEEeCCcEEEEEEECCCCc
Confidence 3778888888888886 58899999999999974 245665543 33689999999999
Q ss_pred CHHHHHHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCC-CceEEEEEccCceEEEEeCCC
Q 005321 91 TKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHND-DEQYVWESQAGGSFTVTRDVS 169 (702)
Q Consensus 91 t~~dl~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~-~~~~~w~~~~~~~~~i~~~~~ 169 (702)
+.+++...+.++++|.... ..........|++|+|+.|+++++ +++|+|++.+ ..+|.|..+++|.+.....
T Consensus 76 ~~~~l~~~f~~~~tsK~~~----~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~~-- 148 (365)
T 1h7s_A 76 EEENFEGLTLKHHTSKIQE----FADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKTP-- 148 (365)
T ss_dssp CGGGSGGGGC--------------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEEE--
T ss_pred CHHHHHHHhhhcccccccc----ccchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeecc--
Confidence 9999999888888763211 000011234799999999999999 9999999864 4589999875555543321
Q ss_pred CCCCCCceEEEEE-eccc---h-hhhh-----cHHHHHHHHHHhcccCccceEE
Q 005321 170 GEPLGRGTKITLF-LKED---Q-CEYL-----EERRIKDLVKKHSEFISYPIYL 213 (702)
Q Consensus 170 ~~~~~~GT~I~L~-lk~~---~-~e~~-----~~~~i~~ii~~ys~fl~~PI~~ 213 (702)
...++||+|++. |... . .+|+ +..+|.+++++|+.+.|. |.|
T Consensus 149 -~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~-v~f 200 (365)
T 1h7s_A 149 -YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAG-IRV 200 (365)
T ss_dssp -CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTT-CEE
T ss_pred -cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCc-eEE
Confidence 345799999997 4221 1 1132 346899999999995442 444
No 26
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.9e-19 Score=194.92 Aligned_cols=283 Identities=16% Similarity=0.146 Sum_probs=170.1
Q ss_pred hcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHhhhhccC
Q 005321 28 TFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKA-NKTLSIIDSGVGMTKADLVNNLGTIARSG 106 (702)
Q Consensus 28 ~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~ 106 (702)
....++..+|+|||+||+||++ ..|.|.+..+ ...|+|.|||+||+.+++...+...++|.
T Consensus 21 evi~~~~~vv~eLv~NaiDA~a------------------~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 21 QVITDLTTAVKELVDNSIDANA------------------NQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp HHCCSHHHHHHHHHHHHHHTTC------------------SEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CcccCHHHHHHHHHHHHHHCCC------------------CEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCc
Confidence 3445688999999999999975 2466665433 36899999999999999987665555542
Q ss_pred chhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEE-----
Q 005321 107 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPLGRGTKITL----- 181 (702)
Q Consensus 107 ~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L----- 181 (702)
...+ .+.......|.+|+|++|++++| +++|+||..+..++.|..+++|.+..... ...++||+|++
T Consensus 83 ~~~~----~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~~---~~~~~GTtV~v~~LF~ 154 (367)
T 3h4l_A 83 IAKF----QDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKTT---TSRNKGTTVLVSQLFH 154 (367)
T ss_dssp -----------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEEE---ECCSSEEEEEEESTTT
T ss_pred CCch----hhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeecc---ccCCCCeEEEEchhhc
Confidence 2211 10112345689999999999999 69999998666789999875555543221 24579999999
Q ss_pred --------EeccchhhhhcHHHHHHHHHHhcccCccc-eEEecccccccccCchhhhhhhhcccCCccccchhhhhhccc
Q 005321 182 --------FLKEDQCEYLEERRIKDLVKKHSEFISYP-IYLWTEKTTEKEVSDDEEEETKEEEEGDVEDVDEDKEKKGKK 252 (702)
Q Consensus 182 --------~lk~~~~e~~~~~~i~~ii~~ys~fl~~P-I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (702)
+++....+| .+|.+++++|+. .+| |.|.-......
T Consensus 155 n~P~R~k~flk~~~~e~---~~i~~~l~~~Al--~~p~v~~~l~~~~~~------------------------------- 198 (367)
T 3h4l_A 155 NLPVRQKEFSKTFKRQF---TKCLTVIQGYAI--INAAIKFSVWNITPK------------------------------- 198 (367)
T ss_dssp TCHHHHHHHHTTHHHHH---HHHHHHHHHHHH--HCTTCEEEEEEECTT-------------------------------
T ss_pred cCchhhhhhccchHHHH---HHHHHHHHHHHh--hCCCeEEEEEEcCCC-------------------------------
Confidence 445544444 589999999998 455 55422100000
Q ss_pred cceeeeeeeeEEeecCCCccccCCCCCCHHHHHHHHHHhhcCcccccceeeee----------------------cccee
Q 005321 253 KKVKEVTHEWQLINKQKPIWLRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFS----------------------VEGQL 310 (702)
Q Consensus 253 ~~~~~~~~~~~~~n~~~~~W~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~----------------------~eg~~ 310 (702)
...+.+|..++.. + -..++...++..+...|..+... ..+.+
T Consensus 199 -------------~~~~~~~~t~~~~-~--~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (367)
T 3h4l_A 199 -------------GKKNLILSTMRNS-S--MRKNISSVFGAGGMRGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYKI 262 (367)
T ss_dssp -------------SCEEEEEECCSSC-C--HHHHHHHHHCTTTTTTEEEEEEEEECGGGCCCCC------------CCEE
T ss_pred -------------CcceEEEECCCCC-C--HHHHHHHHhCHHHHhccEEEecccccccccccccccccccccccccCCcE
Confidence 0001122222111 1 12334444444554555544441 22457
Q ss_pred EEEEEEEeeCCCCCCchhhhhcccceEEEecccccccc---------ccccccc-c-ccceeeeecCCCCCCccc---hh
Q 005321 311 EFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMDN---------CEELIPE-Y-LGFVKGVVDSDDLPLNIS---RE 376 (702)
Q Consensus 311 ~~~~ll~iP~~~p~~~~~~~~~~~~i~lYv~~v~I~d~---------~~~llP~-~-l~Fv~gvVDs~dLplnvS---RE 376 (702)
.++|++.-|... . .+..+..+.+|||+++|.+. ...+++. | +.|+.--+|...+-.||. ||
T Consensus 263 ~i~G~is~p~~~---~--~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~~~~~~P~~~L~l~~~p~~vDVNVhP~K~e 337 (367)
T 3h4l_A 263 RVKGYISQNSFG---C--GRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFNNVQFPAVFLNLELPMSLIDVNVTPDKRV 337 (367)
T ss_dssp EEEEEEECCSTT---C--SBSSSSSEEEEETTEEECCHHHHHHHHHHHHTTCSSCBCCEEEEEECCGGGEECCCSSSTTC
T ss_pred EEEEEEeCCccc---c--cCCCCCcEEEEECCCEecCHHHHHHHHHHHHhcCCCCCcEEEEEEEcChHHcceeECCCCCE
Confidence 888877766632 0 13346789999999999875 1223321 1 223333456666667776 77
Q ss_pred hhc--cchHHHHHHHHHHH
Q 005321 377 TLQ--QNKILKVIRKNLVK 393 (702)
Q Consensus 377 ~lq--~~~~l~~i~~~l~~ 393 (702)
..- +..++..|++.|.+
T Consensus 338 V~f~~e~~i~~~i~~~l~~ 356 (367)
T 3h4l_A 338 ILLHNERAVIDIFKTTLSD 356 (367)
T ss_dssp CEETTHHHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHHHHH
Confidence 653 33455666555544
No 27
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.78 E-value=9.6e-19 Score=187.95 Aligned_cols=282 Identities=20% Similarity=0.245 Sum_probs=164.4
Q ss_pred HHHHHH-HhcCCCchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHH
Q 005321 21 LLSLII-NTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN-KTLSIIDSGVGMTKADLVNN 98 (702)
Q Consensus 21 ll~ll~-~~LYs~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~ 98 (702)
+...|. ......+..+|.|||+||+||.+ ..|.|.++.++ ..|+|.|||+||+.+++...
T Consensus 16 ~~~~Iaagevi~~~~~vv~eLv~NAidA~a------------------~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~ 77 (348)
T 3na3_A 16 VVNRIAAGEVIQRPANAIKEMIENCLDAKS------------------TSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIV 77 (348)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTTC------------------SEEEEEEEGGGTSEEEEEECSCCCCGGGGGTT
T ss_pred HHHhhcccCcccCHHHHHHHHHHHHHHcCC------------------CEEEEEEEeCCEEEEEEEECCcCcChHHhhhh
Confidence 334443 44557789999999999999964 24555554444 46999999999999999876
Q ss_pred HhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCC-CceEEEEEccCceE-EEEeCCCCCCCCCc
Q 005321 99 LGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHND-DEQYVWESQAGGSF-TVTRDVSGEPLGRG 176 (702)
Q Consensus 99 l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~-~~~~~w~~~~~~~~-~i~~~~~~~~~~~G 176 (702)
+...++|--..+ +.+ ......|.+|+|+.|..+++ +++|+|+..+ ..+|.|...++... .+.+. ..++|
T Consensus 78 ~~~~~tsK~~~~-~dl---~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~----~~~~G 148 (348)
T 3na3_A 78 CERFTTSKLQSF-EDL---ASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC----AGNQG 148 (348)
T ss_dssp TSTTCCSSCCCC-------------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE----CCCSE
T ss_pred hccccccccCcc-hhh---hccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe----cCCCC
Confidence 655555422111 000 11345799999999999998 8999999864 46899988764322 23332 35799
Q ss_pred eEEEEE------------eccchhhhhcHHHHHHHHHHhcccCccc-eEEecccccccccCchhhhhhhhcccCCccccc
Q 005321 177 TKITLF------------LKEDQCEYLEERRIKDLVKKHSEFISYP-IYLWTEKTTEKEVSDDEEEETKEEEEGDVEDVD 243 (702)
Q Consensus 177 T~I~L~------------lk~~~~e~~~~~~i~~ii~~ys~fl~~P-I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (702)
|+|++. |+....+| .+|.+++++|+. .+| |.+
T Consensus 149 TtV~v~~LF~n~P~R~k~lk~~~~e~---~~i~~~l~~~Al--~~p~v~f------------------------------ 193 (348)
T 3na3_A 149 TQITVEDLFYNIATRRKALKNPSEEY---GKILEVVGRYSV--HNAGISF------------------------------ 193 (348)
T ss_dssp EEEEEESTTTTCHHHHHTSCCHHHHH---HHHHHHHHHHHH--HCTTCEE------------------------------
T ss_pred cEEEECcccccCchhhhhccccHHHH---HHHHHHHHHHHh--hCCCeEE------------------------------
Confidence 999994 44444444 689999999998 455 555
Q ss_pred hhhhhhccccceeeeeeeeEEeecCCCcc-ccCCCCCCHHHHHHHHHHhhcCcccccceeeeeccc-eeEEEEEEEeeCC
Q 005321 244 EDKEKKGKKKKVKEVTHEWQLINKQKPIW-LRKPEEVTKEEYASFYKSLTNDWEDHLAVKHFSVEG-QLEFKAILFVPRR 321 (702)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~W-~~~~~~~~~~ey~~fy~~~~~~~~~pl~~~h~~~eg-~~~~~~ll~iP~~ 321 (702)
.+.++++..+ .+.+.. ..-..++...++..+..-|..+....++ .+.++|++.-|..
T Consensus 194 -------------------~l~~~g~~~~~~~~~~~--~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~i~G~is~p~~ 252 (348)
T 3na3_A 194 -------------------SVKKQGETVADVRTLPN--ASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYISNANY 252 (348)
T ss_dssp -------------------EEEETTCSSCSEECCTT--CCHHHHHHHHHCHHHHTTEEEEEEEEGGGTEEEEEEEECSSC
T ss_pred -------------------EEEECCEEEEEeecCCC--CCHHHHHHHHhChHhHhhcEEEEeecCCccEEEEEEEeCCcc
Confidence 2233333331 121111 1122334444444444555555555443 4889998877764
Q ss_pred CCCCchhhhhcccceEEEecccccccc---------ccccccc--c-ccceeeeecCCCCCCccc---hhhh--ccchHH
Q 005321 322 APFDLFDTRKKLNNIKLYVRRVFIMDN---------CEELIPE--Y-LGFVKGVVDSDDLPLNIS---RETL--QQNKIL 384 (702)
Q Consensus 322 ~p~~~~~~~~~~~~i~lYv~~v~I~d~---------~~~llP~--~-l~Fv~gvVDs~dLplnvS---RE~l--q~~~~l 384 (702)
. ..+..+.+|||+++|.+. ...++|. | +.|+.--+|.+.+-.||. ||.. .++.++
T Consensus 253 ~--------~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~~i~ 324 (348)
T 3na3_A 253 S--------VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESIL 324 (348)
T ss_dssp C--------BSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC----------------------CT
T ss_pred C--------CCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCHHHHH
Confidence 3 123458999999999886 3456775 2 334555677888888887 6643 344555
Q ss_pred HHHHHHHHH
Q 005321 385 KVIRKNLVK 393 (702)
Q Consensus 385 ~~i~~~l~~ 393 (702)
..|++.|-+
T Consensus 325 ~~i~~~v~~ 333 (348)
T 3na3_A 325 ERVQQHIES 333 (348)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555544
No 28
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.26 E-value=2.3e-10 Score=125.13 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=96.0
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH-------HHhhhhccC
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVN-------NLGTIARSG 106 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~-------~l~~Ia~S~ 106 (702)
...|+|||.||+|+.-+ . ....|.|.++.+ ..|+|.|||.||+.+++.. .+.+....|
T Consensus 34 ~~~v~Elv~N~iD~a~~--~------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~ 98 (390)
T 1kij_A 34 HHLFKEILDNAVDEALA--G------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--T------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE
T ss_pred HHHHHHHHHHHHHHhhh--C------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeeeec
Confidence 45899999999999842 1 124677777654 5899999999999998743 222322333
Q ss_pred chhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEEEEEecc
Q 005321 107 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGS-FTVTRDVSGEPLGRGTKITLFLKE 185 (702)
Q Consensus 107 ~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~GT~I~L~lk~ 185 (702)
.+ | .........|..|+|+.++.+++++++|+|+..+ ..|.+....+.. ..+.+.......++||+|++..
T Consensus 99 ~k-f----~~~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g-~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~P-- 170 (390)
T 1kij_A 99 GK-F----EQGAYKVSGGLHGVGASVVNALSEWTVVEVFREG-KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKP-- 170 (390)
T ss_dssp SG-G----GGSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEEE--
T ss_pred cc-c----cCccccccCCCCCcceeeecccccceEEEEecCC-cEEEEEEcCCcccccceeeccccCCCCCcEEEEEE--
Confidence 22 2 1111123468999999999999999999998643 445444433322 2333221101146899999963
Q ss_pred chhhh----hcHHHHHHHHHHhcc
Q 005321 186 DQCEY----LEERRIKDLVKKHSE 205 (702)
Q Consensus 186 ~~~e~----~~~~~i~~ii~~ys~ 205 (702)
+...| .+...|.+.++.++-
T Consensus 171 d~~~F~~~~~~~~~l~~rl~~~A~ 194 (390)
T 1kij_A 171 DPEIFGNLRFDPSKIRARLREVAY 194 (390)
T ss_dssp CHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred ChHHhCCccccHHHHHHHHHHhcC
Confidence 22222 356789999999885
No 29
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.26 E-value=1.8e-10 Score=125.87 Aligned_cols=164 Identities=17% Similarity=0.225 Sum_probs=103.8
Q ss_pred HhcCC---CchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------H
Q 005321 27 NTFYS---NKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKAD--------L 95 (702)
Q Consensus 27 ~~LYs---~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d--------l 95 (702)
-.+|- ++...|.|||.||+||.-. .....|.|.++.+ +.|+|.|||.||+.++ +
T Consensus 23 PgmYiGs~~~~~lv~ElvdNsiD~a~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~ 87 (390)
T 1s16_A 23 PGMYTDTTRPNHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAV 87 (390)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHH
T ss_pred CceeecCCcHHHHHHHHHHHHHHHHhc--------------CCCCEEEEEEecC-CEEEEEECCCCcCcccccccCcchh
Confidence 45673 2478999999999999631 1135788887765 4899999999999988 5
Q ss_pred HHHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceE-EEEeCCCCCCCC
Q 005321 96 VNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSF-TVTRDVSGEPLG 174 (702)
Q Consensus 96 ~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~-~i~~~~~~~~~~ 174 (702)
...|.++-.+|+ +....-...-|..|+|.-++-+++.+++|+|+.. +..|..+..++..- .+.........+
T Consensus 88 e~v~~~lhagsK------f~~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~-g~~~~~~~~~G~~~~~~~~~g~~~~~~ 160 (390)
T 1s16_A 88 ELILCRLHAGGK------FSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD-GQVYNIAFENGEKVQDLQVVGTCGKRN 160 (390)
T ss_dssp HHHHHCTTEESC------SSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEET-TEEEEEEEETTEEEEEEEEEEECCTTC
T ss_pred hheeeeecccCC------cCCCcccccCCccccchHHHHHhhcccEEEEEEC-CcEEEEEEeCCcccccceecccccCCC
Confidence 655665323332 1111112356899999999999999999999864 34454444433211 122211001126
Q ss_pred CceEEEEEeccchhhh----hcHHHHHHHHHHhcccCc-cceEEe
Q 005321 175 RGTKITLFLKEDQCEY----LEERRIKDLVKKHSEFIS-YPIYLW 214 (702)
Q Consensus 175 ~GT~I~L~lk~~~~e~----~~~~~i~~ii~~ys~fl~-~PI~~~ 214 (702)
+||+|++.. +..-| .+...|.+.++.++-.-+ .-|.+.
T Consensus 161 ~GT~V~f~P--d~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~ 203 (390)
T 1s16_A 161 TGTSVHFWP--DETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFK 203 (390)
T ss_dssp CEEEEEEEE--CGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CceEEEEEE--CccccCcccccHHHHHHHHHHHHhcCCCcEEEEE
Confidence 899999872 22222 356789999999987432 224543
No 30
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.18 E-value=4.8e-11 Score=119.08 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=90.1
Q ss_pred CchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHhhhh
Q 005321 32 NKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADL--------VNNLGTIA 103 (702)
Q Consensus 32 ~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl--------~~~l~~Ia 103 (702)
++..+++|||.||+||... .....|.|.++.+ +.|+|.|||.||+.+++ ...+...-
T Consensus 17 ~~~~~v~Elv~NsiDa~~~--------------g~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~h 81 (201)
T 3fv5_A 17 RPNHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 81 (201)
T ss_dssp STHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC-
T ss_pred ChhhhhHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeeec
Confidence 3578999999999999642 0124677777654 58999999999999883 32222222
Q ss_pred ccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEEEEE
Q 005321 104 RSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGS-FTVTRDVSGEPLGRGTKITLF 182 (702)
Q Consensus 104 ~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~GT~I~L~ 182 (702)
.+|+ | .........|..|+|+-|+..++++++|+|+..+ ..|.....++.. ..+...........||+|++.
T Consensus 82 atsK--~----~~~~~~~s~GfrGeglssinalS~~l~v~t~~~g-~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~ 154 (201)
T 3fv5_A 82 AGGK--F----SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW 154 (201)
T ss_dssp --------------------------CHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE
T ss_pred cccC--c----CCCcccccCcccceecchhhcccceEEEEEEecC-ceEEEEEeCCEEcccceecccCCCCCCCeEEEEE
Confidence 2222 2 1111123579999999999999999999998654 344333333221 122221101124789999996
Q ss_pred eccch--hhhhcHHHHHHHHHHhcccCc-cceEEec
Q 005321 183 LKEDQ--CEYLEERRIKDLVKKHSEFIS-YPIYLWT 215 (702)
Q Consensus 183 lk~~~--~e~~~~~~i~~ii~~ys~fl~-~PI~~~~ 215 (702)
..... ..-.+..+|.+.+++|+-.-| ..|.+..
T Consensus 155 Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~ 190 (201)
T 3fv5_A 155 PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 190 (201)
T ss_dssp ECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 32211 112466789999999986332 3355543
No 31
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.18 E-value=6.2e-10 Score=120.74 Aligned_cols=143 Identities=8% Similarity=0.053 Sum_probs=88.5
Q ss_pred chhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005321 33 KEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFME 112 (702)
Q Consensus 33 ~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~ 112 (702)
+...++|||.||+||... .....|.|.++.++ .|+|+|||.||+. |+.- ..+|.| +
T Consensus 31 l~~~v~ElvdNsiDe~~~--------------g~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~v~--~lhags-K----- 86 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARR--------------GECRDVVLEVGGDG-SIALFCTSRTVTA-ENLV--RVATGA-G----- 86 (369)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTTS-CEEEEEEESSCCH-HHHH--HHHTTT-T-----
T ss_pred HHHHHHHHHhhhHhHHhh--------------CCCCEEEEEEeCCC-EEEEEECCCCcCH-hHee--eeecCC-C-----
Confidence 567999999999999631 12357888887654 8999999999999 5542 333433 2
Q ss_pred HHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceE-----EEEeC-CCCCCCCCceEEEEEeccc
Q 005321 113 ALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSF-----TVTRD-VSGEPLGRGTKITLFLKED 186 (702)
Q Consensus 113 ~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~-----~i~~~-~~~~~~~~GT~I~L~lk~~ 186 (702)
+......+..+.-| |.-++-+++.+++|+|+..+ ..|..+..++ .- ...+. +.+...++||+|++. ++
T Consensus 87 -f~~~~~~~~y~vsG-Gls~vnalSs~l~v~t~r~g-~~~~~~~~~G-~~~~~~~~~~~l~~~g~~~~~GT~V~f~--Pd 160 (369)
T 3cwv_A 87 -FLGRPPGDGWGWDS-MLVVSLALSSRYQVDIWADG-RQWRVMGEHG-HPQGEGAAVTPMEPMPVSAERGVRVHFV--PD 160 (369)
T ss_dssp -GGGSSCCCSTTTTS-SHHHHHHTEEEEEEEEEETT-EEEEEEEETT-EECTTCEEESSCCCCSSCCSEEEEEEEE--EC
T ss_pred -cCCCcccccccccC-HHHHHHHhhceEEEEEEECC-CEEEEEEeCC-cccccccccCCceEecccCCCCCEEEEE--EC
Confidence 22100001122225 77777888899999998643 4454444432 21 02211 112234799999987 22
Q ss_pred hhhh----hcHHHHHHHHHHhcc
Q 005321 187 QCEY----LEERRIKDLVKKHSE 205 (702)
Q Consensus 187 ~~e~----~~~~~i~~ii~~ys~ 205 (702)
..-| .+...|.+.+++++-
T Consensus 161 ~~~F~~~~~e~~~l~~rl~~lA~ 183 (369)
T 3cwv_A 161 ATIFEVLAFDRARLSRRCNELAA 183 (369)
T ss_dssp TTTCSCCCCCHHHHHHHHHHHHH
T ss_pred HHHhCCccccHHHHHHHHHHHcC
Confidence 2222 356789999999986
No 32
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.14 E-value=1.1e-09 Score=119.58 Aligned_cols=157 Identities=16% Similarity=0.131 Sum_probs=99.7
Q ss_pred CchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhhhh
Q 005321 32 NKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKAD--------LVNNLGTIA 103 (702)
Q Consensus 32 ~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d--------l~~~l~~Ia 103 (702)
++...+.|||.||+||.-+ .....|.|.++.+ +.|+|.|||.||+.++ +...|+..-
T Consensus 34 gl~~lv~ElvdNsiDea~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lh 98 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 98 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------TCCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTT
T ss_pred CHHHHHHHHHHhHHHHHhc--------------CCCCEEEEEEeCC-CEEEEEECCCCcccCcccccCcchHHHhheecc
Confidence 4577999999999999641 1124788888765 4999999999999988 444455333
Q ss_pred ccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCc---eEEEEeCCCCCCCCCceEEE
Q 005321 104 RSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGG---SFTVTRDVSGEPLGRGTKIT 180 (702)
Q Consensus 104 ~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~---~~~i~~~~~~~~~~~GT~I~ 180 (702)
.+|+ +....-...-|..|+|.-++-+++.+++|+|+..+ ..|..+...+. ...+.. ....+||+|+
T Consensus 99 agsK------f~~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~l~~~~----~~~~~GT~V~ 167 (391)
T 1ei1_A 99 AGGK------FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTG----ETEKTGTMVR 167 (391)
T ss_dssp EESC------SSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEEE----ECSCCEEEEE
T ss_pred ccCC------cCCCcccccCCccccchHHHHHhcCeEEEEEEeCC-cEEEEEEcCCcccccceecc----CcCCCccEEE
Confidence 3332 11111123569999999999999999999998643 44444433321 111111 1247999999
Q ss_pred EEeccch--h-hhhcHHHHHHHHHHhcccCc-cceEEe
Q 005321 181 LFLKEDQ--C-EYLEERRIKDLVKKHSEFIS-YPIYLW 214 (702)
Q Consensus 181 L~lk~~~--~-e~~~~~~i~~ii~~ys~fl~-~PI~~~ 214 (702)
+...... . .-++...|.+.++.++-..+ .-|.+.
T Consensus 168 f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~ 205 (391)
T 1ei1_A 168 FWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLR 205 (391)
T ss_dssp EEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEE
Confidence 8622111 1 12356789999999887432 225553
No 33
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.01 E-value=5e-10 Score=125.33 Aligned_cols=149 Identities=21% Similarity=0.258 Sum_probs=97.9
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDK---ANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEF 110 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f 110 (702)
..+|+|||+||+||+..-. ..+.+.|.+..+. +...|+|.|||+||+.+++...|....++++.
T Consensus 34 ~qvl~nLv~NAida~~~gg-----------~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 100 (471)
T 1mu5_A 34 YQTVRELIENSLDATDVHG-----------ILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 100 (471)
T ss_dssp HHHHHHHHHHHHHTTGGGT-----------CCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC--
T ss_pred HHHHHHHHHHHHHHhhcCC-----------CceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc--
Confidence 4588999999999986310 0012344443322 23479999999999999999777655333221
Q ss_pred HHHHhcCCCCcccccccccceeeeeecce-----EEEEeecCCCc-eEEEEEc------cCceEEEEeCCCCCCCCCceE
Q 005321 111 MEALQAGADVSMIGQFGVGFYSAYLVAEK-----VIVTTKHNDDE-QYVWESQ------AGGSFTVTRDVSGEPLGRGTK 178 (702)
Q Consensus 111 ~~~~~~~~~~~~iG~fGIGf~S~F~vad~-----v~V~Sr~~~~~-~~~w~~~------~~~~~~i~~~~~~~~~~~GT~ 178 (702)
......|.+|+|++++..+++. +.|.|+..++. ++.|... ++..+...+.+ .....+||+
T Consensus 101 -------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT~ 172 (471)
T 1mu5_A 101 -------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHGTS 172 (471)
T ss_dssp -------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEE-CCTTCCEEE
T ss_pred -------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccccccc-CCCCCCCEE
Confidence 1224568899999999999886 99999876544 5555421 22233333321 123579999
Q ss_pred EEEEeccchhhhhcHHHHHHHHHHhcc
Q 005321 179 ITLFLKEDQCEYLEERRIKDLVKKHSE 205 (702)
Q Consensus 179 I~L~lk~~~~e~~~~~~i~~ii~~ys~ 205 (702)
|++.++.+..++ ..+|.+++++++.
T Consensus 173 V~v~l~~~~~e~--~~~I~~~l~~~al 197 (471)
T 1mu5_A 173 VAISIPGDWPKA--KSRIYEYIKRTYI 197 (471)
T ss_dssp EEEEEECCHHHH--HHHHHHHHHHHHH
T ss_pred EEEEEcCCcchH--HHHHHHHHHHHHh
Confidence 999987654433 2589999999984
No 34
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.95 E-value=1.5e-09 Score=122.83 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=99.2
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDK---ANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEF 110 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f 110 (702)
..+|+|||+||+||+..- ...+.+.|.+..+. +...|+|.|||+||+.+++...|....++++.
T Consensus 33 ~qvl~NLV~NAida~~~g-----------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 99 (530)
T 2zbk_B 33 YQTVRELIENSLDATDVH-----------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 99 (530)
T ss_dssp HHHHHHHHHHHHTTTTTT-----------TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC--
T ss_pred HHHHHHHHHHHHHHHhcc-----------CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc--
Confidence 457899999999998620 00113555555433 23479999999999999998777655333221
Q ss_pred HHHHhcCCCCcccccccccceeeeeecc-----eEEEEeecCCCc-eEEEEE--c----cCceEEEEeCCCCCCCCCceE
Q 005321 111 MEALQAGADVSMIGQFGVGFYSAYLVAE-----KVIVTTKHNDDE-QYVWES--Q----AGGSFTVTRDVSGEPLGRGTK 178 (702)
Q Consensus 111 ~~~~~~~~~~~~iG~fGIGf~S~F~vad-----~v~V~Sr~~~~~-~~~w~~--~----~~~~~~i~~~~~~~~~~~GT~ 178 (702)
......|.+|+|++++..+++ ++.|.|+.+++. ++.|.. . ++......+.. .....+||+
T Consensus 100 -------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT~ 171 (530)
T 2zbk_B 100 -------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHGTS 171 (530)
T ss_dssp -------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEE-CCSSCCEEE
T ss_pred -------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccC-CCCCCCCcE
Confidence 122456899999999999987 699999876544 555542 1 22223333321 122578999
Q ss_pred EEEEeccchhhhhcHHHHHHHHHHhccc
Q 005321 179 ITLFLKEDQCEYLEERRIKDLVKKHSEF 206 (702)
Q Consensus 179 I~L~lk~~~~e~~~~~~i~~ii~~ys~f 206 (702)
|++.++.+..++ ...+.+++++|+..
T Consensus 172 V~v~l~~~~~e~--~~~i~~~l~~~Al~ 197 (530)
T 2zbk_B 172 VAISIPGDWPKA--KSRIYEYIKRTYII 197 (530)
T ss_dssp EEEEEECCHHHH--HHHHHHHHHHHHHH
T ss_pred EEEEeccchhhH--HHHHHHHHHHHHHH
Confidence 999988764433 25889999999864
No 35
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.72 E-value=3.7e-08 Score=99.41 Aligned_cols=159 Identities=15% Similarity=0.134 Sum_probs=92.2
Q ss_pred chhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHhhhhc
Q 005321 33 KEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADL--------VNNLGTIAR 104 (702)
Q Consensus 33 ~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl--------~~~l~~Ia~ 104 (702)
+...++|||.||+||... .....|.|.++.+ +.|+|.|||.||+.+.. .-.|+.+-.
T Consensus 36 l~~lv~ElvdNsiDea~~--------------g~~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lha 100 (220)
T 4duh_A 36 LHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 (220)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------SCCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHhc--------------CCCCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeeccc
Confidence 468999999999999642 1124677777754 58999999999998863 222333322
Q ss_pred cCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEEEEEe
Q 005321 105 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGS-FTVTRDVSGEPLGRGTKITLFL 183 (702)
Q Consensus 105 S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~GT~I~L~l 183 (702)
+|+ | ....-...-|..|+|.-++=+++++++|+++..+ ..|..+...+.. ..+... +....+||+|+...
T Consensus 101 g~K--f----d~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~~--g~~~~~GT~V~F~P 171 (220)
T 4duh_A 101 GGK--F----DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVT--GETEKTGTMVRFWP 171 (220)
T ss_dssp SSC--C----CTTC--------CCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSSCEEE--EECSCCEEEEEEEE
T ss_pred CCC--c----CCCccccccCccceecchhcccccceEEEEEECC-EEEEEEecCCcCcCCceec--cccCCCCcEEEEEE
Confidence 332 1 1111124579999999999999999999998654 333322222211 011111 12347899999863
Q ss_pred ccch---hhhhcHHHHHHHHHHhcccC-ccceEEec
Q 005321 184 KEDQ---CEYLEERRIKDLVKKHSEFI-SYPIYLWT 215 (702)
Q Consensus 184 k~~~---~e~~~~~~i~~ii~~ys~fl-~~PI~~~~ 215 (702)
.... ..-++.+.|.+.++.+|-.- ..-|.+++
T Consensus 172 d~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~d 207 (220)
T 4duh_A 172 SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRD 207 (220)
T ss_dssp CTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 3221 10135678888999888422 13366654
No 36
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.68 E-value=7.3e-09 Score=118.99 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=97.9
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC---CEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN---KTLSIIDSGVGMTKADLVNNLGTIARSGTKEF 110 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~---~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f 110 (702)
..+|+|||+||+||+... .....|.|.+..++ ..|+|+|||.||+.+++...|..+..+++ |
T Consensus 39 ~~Vl~ELV~NAIDa~~~~-------------g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atsk--f 103 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEEA-------------GILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSR--F 103 (621)
T ss_dssp HHHHHHHHHHHHHHHTTT-------------SCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC----C
T ss_pred HHHHHHHHHHHHHHHhhc-------------CCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCc--c
Confidence 568999999999998621 11225555543333 47999999999999999976654422221 1
Q ss_pred HHHHhcCCCCcccccccccceeeeeecce-----EEEEeecCCC-ceEEEEE-----ccCceEE-EEeCCCCCCCCCceE
Q 005321 111 MEALQAGADVSMIGQFGVGFYSAYLVAEK-----VIVTTKHNDD-EQYVWES-----QAGGSFT-VTRDVSGEPLGRGTK 178 (702)
Q Consensus 111 ~~~~~~~~~~~~iG~fGIGf~S~F~vad~-----v~V~Sr~~~~-~~~~w~~-----~~~~~~~-i~~~~~~~~~~~GT~ 178 (702)
. ......|..|+|+.++..+++. +.|.|+..++ .++.+.. .+.+... .... .....+||+
T Consensus 104 ----~--~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~--~~~~~~GT~ 175 (621)
T 2q2e_B 104 ----H--ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVR--DWFRPHGTQ 175 (621)
T ss_dssp ----C--CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEEC--CCSCSSCCC
T ss_pred ----c--cccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccc--cCCCCCCCE
Confidence 0 0112348999999999888877 5999986543 5666664 2222221 1221 123579999
Q ss_pred EEEEeccchhhhhcHHHHHHHHHHhcccCc-cceEEec
Q 005321 179 ITLFLKEDQCEYLEERRIKDLVKKHSEFIS-YPIYLWT 215 (702)
Q Consensus 179 I~L~lk~~~~e~~~~~~i~~ii~~ys~fl~-~PI~~~~ 215 (702)
|++.++.+..++ ....|.+.+++|+-.-+ .-|.+..
T Consensus 176 V~~~f~~~~~~~-~~~~I~~~L~~lAllnpgv~I~L~d 212 (621)
T 2q2e_B 176 IELEMRAAYVKG-RRQSIYEYLKATAIVNPHARITLID 212 (621)
T ss_dssp EEEECSCCCCCC-SSSSSHHHHHHHHHHCCSCEEEECC
T ss_pred EEEEecCccchH-HHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 999987432221 02467888888876432 2245443
No 37
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.68 E-value=3.4e-08 Score=108.02 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=93.8
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhhhhcc
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKAD--------LVNNLGTIARS 105 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d--------l~~~l~~Ia~S 105 (702)
...+.|||.||+||..... ....|.|.++.+++.|+|.|||.||+.++ +.-.|+..-.+
T Consensus 54 ~~lv~EivdNsiDe~~~~g-------------~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhag 120 (400)
T 1zxm_A 54 YKIFDEILVNAADNKQRDP-------------KMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 120 (400)
T ss_dssp HHHHHHHHHHHHHHHHHCT-------------TCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEE
T ss_pred HHHHHHHHhhHHhHHhhcC-------------CCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeeccc
Confidence 4588999999999973211 12467888776668999999999999887 44445533333
Q ss_pred CchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecC-CCceEEEEEccC-ceEEEEeCCCCCCCCCceEEEEEe
Q 005321 106 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHN-DDEQYVWESQAG-GSFTVTRDVSGEPLGRGTKITLFL 183 (702)
Q Consensus 106 ~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~-~~~~~~w~~~~~-~~~~i~~~~~~~~~~~GT~I~L~l 183 (702)
|+ | ..+.-...-|..|+|.-++=+++.+++|+|+.. ++..|......+ .......... ....+||+|++..
T Consensus 121 sK--f----~~~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~-~~~~~GT~V~F~P 193 (400)
T 1zxm_A 121 SN--Y----DDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKP-FNGEDYTCITFQP 193 (400)
T ss_dssp SC--C----CGGGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEE-CCSCCEEEEEEEE
T ss_pred CC--C----CCCcccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceecc-CCCCCccEEEEEE
Confidence 32 1 111112357999999999999999999999864 344444433333 1111111100 1235899999873
Q ss_pred ccch---hhhhcHHH---HHHHHHHhcc
Q 005321 184 KEDQ---CEYLEERR---IKDLVKKHSE 205 (702)
Q Consensus 184 k~~~---~e~~~~~~---i~~ii~~ys~ 205 (702)
.... .+| +.+. |.+.++.++-
T Consensus 194 d~~iF~~~ef-~~~~~~~l~~rlrelA~ 220 (400)
T 1zxm_A 194 DLSKFKMQSL-DKDIVALMVRRAYDIAG 220 (400)
T ss_dssp CGGGGTCSSC-CHHHHHHHHHHHHHHHH
T ss_pred ChHHhCceee-cHHHHHHHHHHHHHHHh
Confidence 3321 222 3444 6677777775
No 38
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.62 E-value=1.5e-07 Score=95.31 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=94.2
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH-------HHHHHhhhhccC
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKAD-------LVNNLGTIARSG 106 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d-------l~~~l~~Ia~S~ 106 (702)
...++|+|.||+|+... + ....|.|.++.+ ..|+|.|||.||+.++ +.-.|+..-.+|
T Consensus 42 ~~~v~Eiv~NaiD~~~~------------g--~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~ 106 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS------------G--FGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGG 106 (226)
T ss_dssp HHHHHHHHHHHHHHHHT------------T--CCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC---
T ss_pred HHHHHHHHHHHHHHHhc------------C--CCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecccC
Confidence 56899999999999641 1 224677777764 5899999999999987 543344333333
Q ss_pred chhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccC----ceEE-EEeCCCCCCCCCceEEEE
Q 005321 107 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAG----GSFT-VTRDVSGEPLGRGTKITL 181 (702)
Q Consensus 107 ~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~----~~~~-i~~~~~~~~~~~GT~I~L 181 (702)
+ |-. ..-...-|..|+|.-++=+++.+++|+++..+ ..|..+...+ .... +.+. .....||+|+.
T Consensus 107 K--fd~----~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g-~~~~q~f~~Gg~~~~~l~~ig~~---~~~~~GT~V~F 176 (226)
T 4emv_A 107 K--FGQ----GGYKTSGGLHGVGSSVVNALSSWLEVEITRDG-AVYKQRFENGGKPVTTLKKIGTA---LKSKTGTKVTF 176 (226)
T ss_dssp -----------------CGGGCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTTEESSCSEEEEEC---CTTCCEEEEEE
T ss_pred c--cCc----cceEeccccccccchhhhhcccceEEEEEeCC-cEEEEEECCCCEEcCCceEeccc---CCCCCCeEEEE
Confidence 2 211 11234569999999999999999999998643 3333333322 1111 2221 12478999998
Q ss_pred Eeccch--hhhhcHHHHHHHHHHhcccC-ccceEEec
Q 005321 182 FLKEDQ--CEYLEERRIKDLVKKHSEFI-SYPIYLWT 215 (702)
Q Consensus 182 ~lk~~~--~e~~~~~~i~~ii~~ys~fl-~~PI~~~~ 215 (702)
...... ..-++.+.|.+.++.+|-.- ..-|.+++
T Consensus 177 ~PD~~iF~~~~~~~~~l~~rlrelA~ln~gv~i~l~d 213 (226)
T 4emv_A 177 MPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTD 213 (226)
T ss_dssp EECTTTCSCCCCCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred EECHHHcCCCCcCHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 633221 11236678888888888422 23466654
No 39
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.36 E-value=2e-06 Score=93.99 Aligned_cols=165 Identities=19% Similarity=0.220 Sum_probs=92.0
Q ss_pred HhcCC---CchhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH-------H
Q 005321 27 NTFYS---NKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADL-------V 96 (702)
Q Consensus 27 ~~LYs---~~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl-------~ 96 (702)
-.+|- ++...+.|+|.||+|+.-. + ....|.|.++.+ +.|+|.|||.||+.+.. .
T Consensus 42 PgMYiGst~~~hlv~EivdNsiDea~a------------g--~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~ 106 (408)
T 3lnu_A 42 PGMYTDTARPNHLAQEVIDNSVDEALA------------G--HAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGV 106 (408)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHT------------T--SCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHH
T ss_pred CccEECCCCcchhhHHHHHHHHHHhhc------------C--CCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcch
Confidence 45665 3578999999999999631 1 234677777654 58999999999998762 2
Q ss_pred HHHhhhhccCchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccC---ceEE-EEeCCCCCC
Q 005321 97 NNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAG---GSFT-VTRDVSGEP 172 (702)
Q Consensus 97 ~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~---~~~~-i~~~~~~~~ 172 (702)
..+.+.-..|.+ |-. ..-...-|..|+|.-++=+++.+++|+++..+ ..|..+...+ .... +.+. ..
T Consensus 107 e~i~t~lhaggK-fd~----~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG-k~~~q~f~~G~~~~~l~~ig~~---~~ 177 (408)
T 3lnu_A 107 ELILTRLHAGGK-FNN----RNYTFSGGLHGVGVSVVNALSTKVELFIKREG-SEHRMEFRDGNAASKLEVVGTV---GK 177 (408)
T ss_dssp HHHHHCC-------------------------CHHHHHHTEEEEEEEEEETT-EEEEEEEETTEECSCCEEEEEC---CT
T ss_pred heEEEecccCCC-cCC----CceeecCCccccccceehhccCeEEEEEEECC-EEEEEEECCCEECCCceEeccC---cC
Confidence 232333333322 211 11123569999999999999999999998654 3333222222 1111 2221 12
Q ss_pred CCCceEEEEEeccch--hhhhcHHHHHHHHHHhcccCc-cceEEec
Q 005321 173 LGRGTKITLFLKEDQ--CEYLEERRIKDLVKKHSEFIS-YPIYLWT 215 (702)
Q Consensus 173 ~~~GT~I~L~lk~~~--~e~~~~~~i~~ii~~ys~fl~-~PI~~~~ 215 (702)
...||+|+....... ..-++.+.|...++.++-..+ .-|.+++
T Consensus 178 ~~~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~d 223 (408)
T 3lnu_A 178 KNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHD 223 (408)
T ss_dssp TCCEEEEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CCCCcEEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 468999998643321 111366788888888875332 3366643
No 40
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.24 E-value=5.1e-06 Score=82.45 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=83.5
Q ss_pred chhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005321 33 KEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFME 112 (702)
Q Consensus 33 ~~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~ 112 (702)
+...++|||.||+|+.-. . ....|.|.++.+ +.|+|.|||.||+.+ .++.|+.... +
T Consensus 32 l~~~v~Elv~NsiD~~~a-g-------------~~~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~~-e 88 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALA-G-------------YANQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPAV-E 88 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT-T-------------SCCEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBHH-H
T ss_pred hHHHHHHHHHHHHhHHhc-C-------------CCcEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCccc-c
Confidence 467899999999998531 0 124677777654 499999999999976 3455543221 1
Q ss_pred HHhcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEEEEEeccchhhh-
Q 005321 113 ALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGS-FTVTRDVSGEPLGRGTKITLFLKEDQCEY- 190 (702)
Q Consensus 113 ~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~GT~I~L~lk~~~~e~- 190 (702)
.+ |+ .-++=+++.+++|+|+..+ ..|..+...+.. ..+... +....+||+|++. ++..-|
T Consensus 89 ---------~i--~t--~SvVNALS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~i--~~~~~~GT~V~F~--Pd~~iF~ 150 (198)
T 3ttz_A 89 ---------VI--LT--SSVVNALSQDLEVYVHRNE-TIYHQAYKKGVPQFDLKEV--GTTDKTGTVIRFK--ADGEIFT 150 (198)
T ss_dssp ---------HH--HH--TCHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEE--EECSCCEEEEEEE--ECTTTCC
T ss_pred ---------cc--ce--eEehhhhcCeEEEEEEECC-cEEEEEEeCCEECCCceec--cCCCCCCcEEEEE--ECHHHhc
Confidence 11 22 2223345689999998654 334333332211 111111 1234799999986 222223
Q ss_pred ----hcHHHHHHHHHHhcccC-ccceEEec
Q 005321 191 ----LEERRIKDLVKKHSEFI-SYPIYLWT 215 (702)
Q Consensus 191 ----~~~~~i~~ii~~ys~fl-~~PI~~~~ 215 (702)
.+...|.+.++.+|-.- ..-|.++.
T Consensus 151 ~~~~~~~~~l~~rlrelA~ln~gv~i~l~d 180 (198)
T 3ttz_A 151 ETTVYNYETLQQRIRELAFLNKGIQITLRD 180 (198)
T ss_dssp SCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred cCCccCHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 36678999999998532 23355554
No 41
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.03 E-value=1.2e-05 Score=88.32 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=81.2
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHhhhhccC
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLV--------NNLGTIARSG 106 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~--------~~l~~Ia~S~ 106 (702)
..+.|+|.||+|+..... ....|.|.++.+++.|+|.|||.||+.+... -.|+.+-.+|
T Consensus 67 ~lv~EivdNaiDe~~~~g-------------~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGg 133 (418)
T 1pvg_A 67 KIFDEILVNAADNKVRDP-------------SMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 133 (418)
T ss_dssp HHHHHHHHHHHHHHHHCT-------------TCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEES
T ss_pred HHHHHHHhCHHHHHHhcC-------------CCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEeccc
Confidence 379999999999974211 2357888888777899999999999876522 1233333344
Q ss_pred chhHHHHHhcCCCCcccccccccceeeeeecceEEEEeec-CCCceEEEEEccC-----ceEEEEeCCCCCCCCCceEEE
Q 005321 107 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKH-NDDEQYVWESQAG-----GSFTVTRDVSGEPLGRGTKIT 180 (702)
Q Consensus 107 ~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~-~~~~~~~w~~~~~-----~~~~i~~~~~~~~~~~GT~I~ 180 (702)
+-. .+.-...-|..|+|.-.+=+++.+++|+++. .++..|..+-..+ .. .+... .....||+|+
T Consensus 134 Kfd------~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p-~i~~~---~~~~tGT~V~ 203 (418)
T 1pvg_A 134 NYD------DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPP-KITSY---KKGPSYTKVT 203 (418)
T ss_dssp CCC------TTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCC-EEEEC---CSSCCEEEEE
T ss_pred ccC------CCceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCC-eeccc---CCCCCceEEE
Confidence 311 1111234699999998888999999999985 3444443222211 11 23321 1236899999
Q ss_pred EEecc
Q 005321 181 LFLKE 185 (702)
Q Consensus 181 L~lk~ 185 (702)
.....
T Consensus 204 F~PD~ 208 (418)
T 1pvg_A 204 FKPDL 208 (418)
T ss_dssp EEECG
T ss_pred EEECh
Confidence 87544
No 42
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.48 E-value=7.2e-05 Score=69.07 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=47.9
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++.+||.||+.+.. ..+.|.+..+.+.-.|.|.|||.||+.+++...+.. ..+++
T Consensus 47 ~il~nLl~NAi~~~~----------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~-~~~~~------- 102 (152)
T 1id0_A 47 EVMGNVLDNACKYCL----------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDR-GQRVD------- 102 (152)
T ss_dssp HHHHHHHHHHHHHCS----------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSC-CCCTT-------
T ss_pred HHHHHHHHHHHHhCc----------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhcc-ceecc-------
Confidence 467899999999863 124555555555567999999999999887743321 11111
Q ss_pred hcCCCCcccccccccceeeeeecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
..-+..|+|++.+-.+++
T Consensus 103 ------~~~~g~GlGL~i~~~~~~ 120 (152)
T 1id0_A 103 ------TLRPGQGVGLAVAREITE 120 (152)
T ss_dssp ------CCCTTCCSCHHHHHHHHH
T ss_pred ------CCCCCcccCHHHHHHHHH
Confidence 112568899876655543
No 43
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.45 E-value=5.2e-05 Score=74.20 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=33.0
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
++.+||.||+.+.. ....|.|.+...+ |.|.|||.||+.+++...+.... +++
T Consensus 121 il~nLl~NAi~~~~----------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if~~f~-~~~-------- 173 (222)
T 3jz3_A 121 LVRNLLDNAVRYSP----------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIGERFY-RPP-------- 173 (222)
T ss_dssp HHHHHHHHHHHTCC----------------TTCEEEEEECSSE--EEEECSCC---------------------------
T ss_pred HHHHHHHHHHHcCC----------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHHhhhc-cCC--------
Confidence 67899999998863 1235666664433 99999999999998875443221 111
Q ss_pred cCCCCcccccccccceeeeeecc
Q 005321 116 AGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~vad 138 (702)
....+..|+|++-+-.++.
T Consensus 174 ----~~~~~g~GlGL~i~~~i~~ 192 (222)
T 3jz3_A 174 ----GQTATGSGLGLSIVQRIAK 192 (222)
T ss_dssp ------------CTHHHHHHHHH
T ss_pred ----CCCCCcccccHHHHHHHHH
Confidence 1122467999876655544
No 44
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.44 E-value=0.00013 Score=67.31 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=50.6
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEA 113 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~ 113 (702)
..++.|||.||+.+.... .....+.|.+..+.+.-.|+|.|||.||+ ++.+.+... .+++
T Consensus 41 ~~il~~l~~Nai~h~~~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~-~~~~------ 100 (145)
T 1th8_A 41 KTVVSEAVTNAIIHGYNN-----------DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPL-FTTK------ 100 (145)
T ss_dssp HHHHHHHHHHHHHTTSTT-----------CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------
T ss_pred HHHHHHHHHHHHHHhcCC-----------CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhccc-ccCC------
Confidence 457999999999886420 01123455555554446799999999999 555332211 1110
Q ss_pred HhcCCCCcccccccccceeeeeecceEEEEee
Q 005321 114 LQAGADVSMIGQFGVGFYSAYLVAEKVIVTTK 145 (702)
Q Consensus 114 ~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr 145 (702)
...+..|+|++-+-.+++++.+.+.
T Consensus 101 -------~~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 101 -------PELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp ----------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred -------CCCCCCcchHHHHHHHHheEEEEeC
Confidence 0124579999877777775555543
No 45
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.39 E-value=0.00015 Score=66.92 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=45.1
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++.+||.||+.+... ..+.|.+..+.+.-.|.|.|||.||+.+++.+.+....++.+
T Consensus 49 ~il~nLl~NA~~~~~~---------------~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~------- 106 (150)
T 1ysr_A 49 LAVDNAIANAVKHGGA---------------TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST------- 106 (150)
T ss_dssp HHHHHHHHHHHHTTCC---------------SEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC-----------
T ss_pred HHHHHHHHHHHhcCCC---------------cEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCC-------
Confidence 3678999999988531 134455544544567999999999999998865543221111
Q ss_pred hcCCCCcccccccccceeeeeecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
..-+..|+|++.+-.+++
T Consensus 107 ------~~~~g~GlGL~i~~~~~~ 124 (150)
T 1ysr_A 107 ------ASHSGSGLGLALVAQQAQ 124 (150)
T ss_dssp -------------CCCHHHHHHHH
T ss_pred ------CCCCCCCcCHHHHHHHHH
Confidence 112457889877665554
No 46
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.34 E-value=0.0002 Score=72.41 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=47.1
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++.+||.||+++... ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+.. ..++
T Consensus 158 ~il~nLl~NA~~~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-~~~~-------- 214 (268)
T 4ew8_A 158 QTLDHLVENALRQTPP--------------GGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDR-FVGR-------- 214 (268)
T ss_dssp HHHHHHHHHHHHHSCT--------------TCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTST-TCCC--------
T ss_pred HHHHHHHHHHHHhCCC--------------CCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHH-HhcC--------
Confidence 3688999999988631 1234555544444457999999999999887643321 1111
Q ss_pred hcCCCCcccccccccceeeeeecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
.-+..|+|++.+-.++.
T Consensus 215 -------~~~g~GlGL~i~~~~~~ 231 (268)
T 4ew8_A 215 -------DRGGPGLGLALVKALVE 231 (268)
T ss_dssp -------SSCCCTTHHHHHHHHHH
T ss_pred -------CCCCCcccHHHHHHHHH
Confidence 11467999876655543
No 47
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.31 E-value=0.00014 Score=70.11 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=33.8
Q ss_pred HHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEE--EcCCCCEEEEEeCCCCCCHHHHH
Q 005321 37 LRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIV--PDKANKTLSIIDSGVGMTKADLV 96 (702)
Q Consensus 37 lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~--~d~~~~~l~I~DnGiGMt~~dl~ 96 (702)
+.+||.||+.+........+. .+......|.|. .+.+.-.|+|.|||.||+.+++.
T Consensus 52 l~nLl~NAik~~~~~~~~~~~----~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 52 LLHLLRNAIDHGIEPKEERIA----KGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp HHHHHHHHHHHTSCCHHHHHH----HTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHhhhcccccccc----ccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHh
Confidence 899999999996210000000 000122345544 44444569999999999999874
No 48
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.27 E-value=0.00024 Score=70.49 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=48.3
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 115 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~~ 115 (702)
++.+||.||+.+... ...+.|.+..+.+.-.|+|.|||.||+.+++...+... .+++
T Consensus 127 il~nLl~NA~~~~~~--------------~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~-~~~~-------- 183 (244)
T 3d36_A 127 CLLNVMKNAIEAMPN--------------GGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPY-FTTK-------- 183 (244)
T ss_dssp HHHHHHHHHHHTCTT--------------CEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTT-CCSS--------
T ss_pred HHHHHHHHHHHhccC--------------CCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhccc-ccCC--------
Confidence 678999999988631 12345555555555679999999999999887543221 1111
Q ss_pred cCCCCcccccccccceeeeeecc
Q 005321 116 AGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 116 ~~~~~~~iG~fGIGf~S~F~vad 138 (702)
..+..|+|++.+-.+++
T Consensus 184 ------~~~g~GlGL~i~~~i~~ 200 (244)
T 3d36_A 184 ------GVKGTGLGMMVVYRIIE 200 (244)
T ss_dssp ------GGGCCSCHHHHHHHHHH
T ss_pred ------CCCCcchhHHHHHHHHH
Confidence 12457999877665554
No 49
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.23 E-value=0.00035 Score=75.90 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=62.2
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.+|.+||.||+.|....... ....+.+.|.+..+.+.-.|+|.|||.||+.+++.+.|...- ++.... ..
T Consensus 234 ~il~NLl~NAik~~~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~-~~~~~~--~~ 303 (394)
T 2btz_A 234 HMLFELFKNAMRATVESHES-------SLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMY-STAPTP--QP 303 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTTT-------CSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTT-TCCC------
T ss_pred HHHHHHHHHHHHHhhhcccc-------CCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccc-cCCCCC--Cc
Confidence 37889999999998631100 001123555555444445799999999999999986553322 221100 00
Q ss_pred hcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPLGRGTKITLFLKE 185 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 185 (702)
+......+.+|+|+.-|-.+++.. +|...+... .+.||+++|.|..
T Consensus 304 --~~~~~~~~G~GLGL~i~~~i~~~~------------------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 304 --GTGGTPLAGFGYGLPISRLYAKYF------------------QGDLQLFSM-----EGFGTDAVIYLKA 349 (394)
T ss_dssp ------------CCHHHHHHHHHHHT------------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred --ccCCCCCCCccCCHHHHHHHHHHh------------------CCEEEEEec-----CCCceEEEEEecC
Confidence 001223567899987666555421 123333331 2569999988753
No 50
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.19 E-value=0.00017 Score=65.25 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=31.9
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADL 95 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl 95 (702)
+++|||+||+.+.. ...+.|.+..+.+.-.|+|.|||.||+.+++
T Consensus 44 il~nll~Na~k~~~---------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 44 CLKEAVTNVVKHSQ---------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHTC---------------CSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHhcCC---------------CcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 67899999988752 1234555555544567999999999986544
No 51
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.18 E-value=0.00013 Score=69.57 Aligned_cols=80 Identities=21% Similarity=0.278 Sum_probs=48.3
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKAN--KTLSIIDSGVGMTKADLVNNLGTIARSGTKEFME 112 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~ 112 (702)
.+|.+||.||+.+... ...+.|.+.....+ -.|+|.|||.||+.+++...+... .++..
T Consensus 46 ~il~nLl~NAi~~~~~--------------~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~-~~~~~---- 106 (177)
T 3sl2_A 46 QVLDNIISNALKYSPE--------------GGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRF-YRVDK---- 106 (177)
T ss_dssp HHHHHHHHHHHHTCCT--------------TCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTT-CCCC-----
T ss_pred HHHHHHHHHHHHhCCC--------------CCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhh-ccCCC----
Confidence 3678999999988631 13456666544333 468999999999998877433322 22111
Q ss_pred HHhcCCCCcccccccccceeeeeecc
Q 005321 113 ALQAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 113 ~~~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
......+..|+|++.+-.++.
T Consensus 107 -----~~~~~~~g~GlGL~iv~~~~~ 127 (177)
T 3sl2_A 107 -----ARTRKLGGTGLGLAIAKEMVQ 127 (177)
T ss_dssp ----------CCCCCCHHHHHHHHHH
T ss_pred -----CCCCCCCCCCcCHHHHHHHHH
Confidence 011223578999876655544
No 52
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.18 E-value=0.00026 Score=69.34 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=30.0
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADL 95 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl 95 (702)
+++||+.||+.+.. ...+.|.+..+.+.-.|+|.|||+||+.+.+
T Consensus 134 il~nll~Na~k~~~---------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHSQ---------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHTC---------------CSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 68899999988752 1234555555555567999999999998765
No 53
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.18 E-value=0.00024 Score=65.24 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=45.2
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++.+||.||+.+... ...+.|.+..+.+.-.|+|.|||.||+.+++...+... .++
T Consensus 50 ~il~nll~NAi~~~~~--------------~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~-~~~-------- 106 (152)
T 3a0y_A 50 QVLINLVQNAIEATGE--------------NGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPF-FTT-------- 106 (152)
T ss_dssp HHHHHHHHHHHHHHCT--------------TCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTT-CCC--------
T ss_pred HHHHHHHHHHHHhcCC--------------CCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhh-ccC--------
Confidence 3678999999988731 12344444444444578999999999998877433221 111
Q ss_pred hcCCCCcccccccccceeeeeec
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVA 137 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~va 137 (702)
.-+..|+|++.+-.++
T Consensus 107 -------~~~g~GlGL~i~~~~~ 122 (152)
T 3a0y_A 107 -------KTQGTGLGLSICRKII 122 (152)
T ss_dssp -------C--CCCCSHHHHHHHH
T ss_pred -------CCCCCCcCHHHHHHHH
Confidence 1145789987665443
No 54
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.17 E-value=0.00042 Score=75.37 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=66.7
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.+|.+||.||+.|........ ...+.+.|.+..+.+.-.|.|.|+|.||+.+++.+.|... .++...- ..
T Consensus 233 ~il~NLl~NAik~~~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f-~~~~~~~--~~ 302 (394)
T 2e0a_A 233 HMLFELFKNAMRATVEHQENQ-------PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYT-YSTAPTP--VM 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS-------SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTT-CCSSCCC----
T ss_pred HHHHHHHHHHHHHHHhccccc-------CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcC-ccCCCCC--Cc
Confidence 378899999999986421100 1122355555544444579999999999999998655432 2221100 00
Q ss_pred hcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPLGRGTKITLFLKE 185 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 185 (702)
+.......+.+|+|+.-|-.+++.. +|...+... .+.||+++|.|..
T Consensus 303 -~~~~~~~~~G~GLGL~i~~~i~~~~------------------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 303 -DNSRNAPLAGFGYGLPISRLYAKYF------------------QGDLNLYSL-----SGYGTDAIIYLKA 349 (394)
T ss_dssp -----CCCSSCSSCHHHHHHHHHHHT------------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred -CcCCCCCCCCcccCHHHHHHHHHHh------------------CCEEEEEec-----CCccEEEEEEeCC
Confidence 0001234567899997665555421 123333331 2569999998763
No 55
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.15 E-value=0.00016 Score=67.70 Aligned_cols=76 Identities=11% Similarity=0.146 Sum_probs=47.9
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.++.+||+||+.+.. ..+.|.+..+.+.-.|.|.|||.||+.+++...+... .+++
T Consensus 50 ~il~nll~NAik~~~----------------~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f-~~~~------- 105 (161)
T 1bxd_A 50 RAVANMVVNAARYGN----------------GWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPF-VRGD------- 105 (161)
T ss_dssp HHHHHHHHHHHTTCC----------------SCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCC-CCCS-------
T ss_pred HHHHHHHHHHHhhcC----------------CeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCc-eeCC-------
Confidence 367889999977641 2355666555545679999999999998876433221 1111
Q ss_pred hcCCCCcccccccccceeeeeecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
.....+..|+|++-+-.+++
T Consensus 106 ----~~~~~~g~GlGL~i~~~~~~ 125 (161)
T 1bxd_A 106 ----SARTISGTGLGLAIVQRIVD 125 (161)
T ss_dssp ----CCCCCCCCSCCCCTTHHHHH
T ss_pred ----CCCCCCCcccCHHHHHHHHH
Confidence 11112568999887665544
No 56
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.08 E-value=0.00051 Score=75.42 Aligned_cols=118 Identities=22% Similarity=0.278 Sum_probs=63.9
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.+|.+||.||+.|.....-.. + ...+.+.|.+..+.+.-.|+|.|||.||+.+++.+.|... .++... ...
T Consensus 256 ~vl~NLl~NAik~~~~~~~~~---~---~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f-~~~~~~--~~~ 326 (419)
T 1y8o_A 256 HMLFELFKNSMRATVELYEDR---K---EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYM-YSTAPR--PSL 326 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---S---SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTT-TC---------
T ss_pred HHHHHHHHHHHHHHHhhcccc---C---CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcc-cccCCC--CCc
Confidence 478899999999986422100 0 0012355555544444579999999999999988644332 221110 000
Q ss_pred hcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPLGRGTKITLFLKE 185 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 185 (702)
. .......+.+|+|+.-|-.+++.. +|...+... .+.||+++|.|..
T Consensus 327 ~-~~~~~~~~G~GLGL~I~k~iv~~~------------------gG~I~v~s~-----~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 327 E-PTRAAPLAGFGYGLPISRLYARYF------------------QGDLKLYSM-----EGVGTDAVIYLKA 373 (419)
T ss_dssp -------CC--CTTHHHHHHHHHHHT------------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred c-ccCCCCcCCeecCHHHHHHHHHHh------------------CCEEEEEec-----CCCCEEEEEEecC
Confidence 0 001234567899987665555421 223334331 2569999998753
No 57
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0028 Score=77.74 Aligned_cols=145 Identities=18% Similarity=0.221 Sum_probs=80.8
Q ss_pred hHHHHHHHcHHh-HhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhhhhcc
Q 005321 35 IFLRELISNSSD-ALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKAD--------LVNNLGTIARS 105 (702)
Q Consensus 35 v~lRELIqNA~D-A~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d--------l~~~l~~Ia~S 105 (702)
..+.|.|.||+| |++ + ...-.|.|+++.+++.|+|.|||-||+-+. +.-.|+++-.+
T Consensus 62 hl~~EildNsiDea~a--------g------~~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG 127 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVR--------D------PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 127 (1177)
T ss_dssp HHHHHHHHHHHHHHHH--------C------TTCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred eEeeEEEEChHhHHhh--------C------CCCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccc
Confidence 467999999999 443 1 112368888887789999999999997531 22223333333
Q ss_pred CchhHHHHHhcCCCCcccccccccceeeeeecceEEEEeec-CCCceEE--EEEccC--ceEEEEeCCCCCCCCCceEEE
Q 005321 106 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKH-NDDEQYV--WESQAG--GSFTVTRDVSGEPLGRGTKIT 180 (702)
Q Consensus 106 ~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~-~~~~~~~--w~~~~~--~~~~i~~~~~~~~~~~GT~I~ 180 (702)
|+- ..+.-...-|.-|||.--+=+++.++.|.+.. .++..|. |+.... +.-.+... .....||+|+
T Consensus 128 gKF------d~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~---~~~~tGT~V~ 198 (1177)
T 4gfh_A 128 SNY------DDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY---KKGPSYTKVT 198 (1177)
T ss_dssp SCC------CCSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC---CSSCCCEEEE
T ss_pred cCc------CCCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecC---CCCCCceEEE
Confidence 331 11111234599999986666677887777653 2333332 332111 11122221 2346799998
Q ss_pred EEeccch---hhhhcHHHHHHHHHHh
Q 005321 181 LFLKEDQ---CEYLEERRIKDLVKKH 203 (702)
Q Consensus 181 L~lk~~~---~e~~~~~~i~~ii~~y 203 (702)
....... .+ ++.+.+....++.
T Consensus 199 F~PD~~iF~~~~-~~~d~l~~~~r~~ 223 (1177)
T 4gfh_A 199 FKPDLTRFGMKE-LDNDILGVMRRRV 223 (1177)
T ss_dssp EEECHHHHTCSS-CCHHHHHHHHHHH
T ss_pred EEeCHHhcCCcE-eCHHHHHHHHHHH
Confidence 7654321 12 2444555444443
No 58
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.98 E-value=0.00039 Score=75.34 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=38.9
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNL 99 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l 99 (702)
.+|.+||.||+.|.....-. . ....+.+.|.+..+.+.-.|+|.|||.||+.+++.+.|
T Consensus 241 ~il~NLl~NAik~~~~~~~~---~---~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF 299 (388)
T 1gkz_A 241 YILPELLKNAMRATMESHLD---T---PYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVM 299 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCTT---C---TTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTT
T ss_pred HHHHHHHHHHHHHhhccccC---C---CCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhc
Confidence 47899999999998642100 0 00112455555544444579999999999999887543
No 59
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.81 E-value=0.0008 Score=67.87 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=46.2
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVP--DKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFME 112 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~ 112 (702)
.++..||+||+.+... ......|.|.+ ..+.-.|+|.|||+||+.+++.+.|...-+ +..
T Consensus 141 ~il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~-~~~---- 202 (258)
T 2c2a_A 141 QVLLNLLNNGVKYSKK-------------DAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYR-VDS---- 202 (258)
T ss_dssp HHHHHHHHHHHHTCCT-------------TCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCC-CC-----
T ss_pred HHHHHHHHHHHhcCcC-------------CCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhcccccc-CCC----
Confidence 3678899999988631 11123455544 333456899999999999988754433221 111
Q ss_pred HHhcCCCCcccccccccceeeeeecc
Q 005321 113 ALQAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 113 ~~~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
......+..|+|++-|-.+++
T Consensus 203 -----~~~~~~~G~GLGL~i~~~iv~ 223 (258)
T 2c2a_A 203 -----SLTYEVPGTGLGLAITKEIVE 223 (258)
T ss_dssp -------------CCCTHHHHHHHHH
T ss_pred -----CCCCCCCCcchHHHHHHHHHH
Confidence 001122457999876655543
No 60
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=96.78 E-value=0.0012 Score=71.90 Aligned_cols=117 Identities=17% Similarity=0.237 Sum_probs=66.3
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 114 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~~~ 114 (702)
.+|.+||.||+.|.....-. ....+.+.|.+..+.+.-.|+|.|||.||+.+++.+.|... .++... ...
T Consensus 246 ~il~NLl~NAik~t~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f-~~~~~~--~~~ 315 (407)
T 2q8g_A 246 HMVFELFKNAMRATMEHHAN-------RGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYM-YSTAPR--PRV 315 (407)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-------TCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTT-TTCCCC--CCS
T ss_pred HHHHHHHHHHHHHHhhcccc-------CCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCcc-ccCCCC--CCc
Confidence 36889999999998642100 01122355555544444579999999999999988544322 221110 000
Q ss_pred hcCCCCcccccccccceeeeeecceEEEEeecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005321 115 QAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPLGRGTKITLFLKE 185 (702)
Q Consensus 115 ~~~~~~~~iG~fGIGf~S~F~vad~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 185 (702)
+.......|.+|+|+.-|-.+++.. +|...+... .+.||+++|.|..
T Consensus 316 -~~~~~~~~~G~GLGL~Ivr~i~~~~------------------gG~i~v~s~-----~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 316 -ETSRAVPLAGFGYGLPISRLYAQYF------------------QGDLKLYSL-----EGYGTDAVIYIKA 362 (407)
T ss_dssp -SCCSCCCSSCTTCHHHHHHHHHHHT------------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred -cccCCCCCCCcCCCHHHHHHHHHHh------------------CCEEEEEEc-----CCCceEEEEEECC
Confidence 0001234577899987665554421 123334331 2569999998753
No 61
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.51 E-value=0.0013 Score=60.81 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=36.6
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCC----------CCEEEEEeCCCCCCHHHHHHHHhhhhc
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKA----------NKTLSIIDSGVGMTKADLVNNLGTIAR 104 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~----------~~~l~I~DnGiGMt~~dl~~~l~~Ia~ 104 (702)
.++.+||.||+.+.... ...+.|.+..+.. .-.|.|.|||.||+.+++...+... .
T Consensus 51 ~il~nLl~NAik~~~~~-------------~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~-~ 116 (160)
T 1r62_A 51 QVLLNIVRNALQALGPE-------------GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPM-V 116 (160)
T ss_dssp HHHHHHHHHHHHHHGGG-------------CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC--------------
T ss_pred HHHHHHHHHHHHHhhcc-------------CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCcc-c
Confidence 36789999999987420 1224444443333 3468999999999999887543221 1
Q ss_pred cCchhHHHHHhcCCCCcccccccccceeeeeecc
Q 005321 105 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAE 138 (702)
Q Consensus 105 S~~~~f~~~~~~~~~~~~iG~fGIGf~S~F~vad 138 (702)
++ + -+..|+|++.+-.+++
T Consensus 117 ~~------------~---~~g~GlGL~i~~~~~~ 135 (160)
T 1r62_A 117 SG------------R---EGGTGLGLSIARNLID 135 (160)
T ss_dssp ----------------------CHHHHHHHHHHH
T ss_pred cC------------C---CCCCccCHHHHHHHHH
Confidence 11 0 1457899876655543
No 62
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.30 E-value=0.0014 Score=58.61 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=31.5
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKAD 94 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d 94 (702)
++.|||.||+.+.. ...+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 47 il~nll~NA~k~~~---------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 47 VVREAVSNAVRHAA---------------ASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHCCCCSS---------------CCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHhCC---------------CceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 57899999988752 1235666666655 6799999999998654
No 63
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.17 E-value=0.0052 Score=66.49 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=34.8
Q ss_pred HHHHHHcHHhHhh----hhHhhccCCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHH
Q 005321 37 LRELISNSSDALD----KIRFEGLTDKSKLDAQPELFIRIVP--DKANKTLSIIDSGVGMTKADLV 96 (702)
Q Consensus 37 lRELIqNA~DA~~----k~r~~~l~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~dl~ 96 (702)
|.+||.||+|++- .|... +......|.|.. +.+.-.|+|.|||.||+.+.+.
T Consensus 111 l~nLl~NAi~h~~e~~~~r~~~--------gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~ 168 (379)
T 1b3q_A 111 LLHLLRNAIDHGIEPKEERIAK--------GKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 168 (379)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHT--------TCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHhc--------CCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHH
Confidence 8999999999972 11111 111234565554 3333568999999999999874
No 64
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=95.51 E-value=0.005 Score=64.26 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=35.2
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKADLVN 97 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~ 97 (702)
++.+||.||+.+... .+.+.|.+..+.+.-.|+|.|||+||+.+++.+
T Consensus 248 vl~nLl~NA~k~~~~--------------~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 248 VLINLVQNAIEATGE--------------NGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHTHHHHTTCT--------------TCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHhccC--------------CCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 688999999998631 134555555554456799999999999987764
No 65
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.50 E-value=0.0074 Score=53.49 Aligned_cols=44 Identities=25% Similarity=0.423 Sum_probs=32.1
Q ss_pred hHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH
Q 005321 35 IFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVGMTKAD 94 (702)
Q Consensus 35 v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d 94 (702)
.+++||+.||..+.. ...+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 42 ~il~nll~Na~k~~~---------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 42 AVLREAVSNAVRHAN---------------ATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHTCTT---------------CCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHhCC---------------CCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 367899999987753 1235566655555 7799999999998765
No 66
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=95.17 E-value=0.013 Score=59.30 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=30.2
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCCCCEEEEEeCCCC--CCHHHHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGVG--MTKADLVN 97 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiG--Mt~~dl~~ 97 (702)
++.=||+||.+|.. ..+.+.|.+..+.+.-.|+|.|+|.| +.++.+..
T Consensus 150 vl~NLl~NA~~a~~--------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~ 199 (247)
T 4fpp_A 150 AVLNIAQIAASALP--------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAG 199 (247)
T ss_dssp HHHHHHHHHHTTCT--------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHHH
Confidence 45568888888763 12335555555555567999999977 55544443
No 67
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=85.47 E-value=0.77 Score=49.71 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=41.6
Q ss_pred hhHHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005321 34 EIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKA-NKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFME 112 (702)
Q Consensus 34 ~v~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~dl~~~l~~Ia~S~~~~f~~ 112 (702)
..++.||+.||+...-. ......+.|++..+.+ .-.|.|.|+|.|++.. +.
T Consensus 299 ~l~v~El~~Nav~Ha~~-----------~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~------ 350 (399)
T 3ke6_A 299 VHAISEFVENAVEHGYA-----------TDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG------ 350 (399)
T ss_dssp HHHHHHHHHHHHHHBCC-----------SCCTTCEEEEEEECTTSEEEEEEEESCBC-----------------------
T ss_pred HHHHHHHHHHHHHhccc-----------CCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC------
Confidence 46899999999998631 0112345666655533 3579999999999864 10
Q ss_pred HHhcCCCCcccccccccceeeeeecceEEEEe
Q 005321 113 ALQAGADVSMIGQFGVGFYSAYLVAEKVIVTT 144 (702)
Q Consensus 113 ~~~~~~~~~~iG~fGIGf~S~F~vad~v~V~S 144 (702)
. +.-|.|++-+=.+++++.+.+
T Consensus 351 ------~----~~~G~GL~lv~~l~~~~~~~~ 372 (399)
T 3ke6_A 351 ------A----RGRGRGLAMAEALVSEARIMH 372 (399)
T ss_dssp ----------------CHHHHHTTSSEEEEEE
T ss_pred ------C----CCCCcHHHHHHHHHHheeeEE
Confidence 0 234667766666778776544
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=72.87 E-value=2.7 Score=40.86 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=35.3
Q ss_pred HHHHHHHcHHhHhhhhHhhccCCCCccCCCCCceEEEEEc--CCCCEEEEEeCCCCCCHHHHHH
Q 005321 36 FLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPD--KANKTLSIIDSGVGMTKADLVN 97 (702)
Q Consensus 36 ~lRELIqNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d--~~~~~l~I~DnGiGMt~~dl~~ 97 (702)
-+-.||.||.+|+... . .+ .....+.|.|..+ ++.-.|.|.|+|.|++.+.+.+
T Consensus 109 ~lgnLi~na~~Ai~~~----~-~~---~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~ 164 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQA----V-SR---ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDD 164 (192)
T ss_dssp HHHHHHHHHHHHHHHH----B-CT---TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC-
T ss_pred HHHHHHHHHHHHHHhh----h-cc---CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHH
Confidence 4567999999998642 0 01 1123345555554 4456799999999999887664
Done!