BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005323
(702 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/695 (59%), Positives = 524/695 (75%), Gaps = 4/695 (0%)
Query: 3 YPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVT 62
YPDS+VGTDSHTTMID MLGQP+SMVLP V+G++L GK VT
Sbjct: 216 YPDSLVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVT 275
Query: 63 ATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVT 122
+TD+VLT+T+ LR+ GVVG FVEF+G G+++LS+ADRATIANM PEYGAT FFPVD V+
Sbjct: 276 STDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATATFFPVDEVS 335
Query: 123 LQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRP 182
++YL TGR + V I YL+A MF DYS+P + ++ +EL+L+ VVPC SGPKRP
Sbjct: 336 IKYLVQTGRDESKVKQIRKYLQAVGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRP 395
Query: 183 HDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITS 242
D+V +++MK D+ +CL + GFKGF + ++ + F ++ + L HG VVIAAITS
Sbjct: 396 QDKVAVSDMKKDFESCLGAKQGFKGFQVAPDHHNDHKTFIYNDSEFTLSHGSVVIAAITS 455
Query: 243 CTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGF 302
TNTSNPSVMLGA L+AKKA + GL VKP++KTSL+PGSGVVT YL+ SG+ YL+ LGF
Sbjct: 456 STNTSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGF 515
Query: 303 HIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPL 362
+VGYG TCIGNSG + + V AIT+ D+VA VLSGNRNFEGRVHP TRANYLASPPL
Sbjct: 516 DVVGYGSMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPL 575
Query: 363 VVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAI 422
V+AYA+AG++ IDFE EP+G G+++FLRDIWP+ EE+ V ++ V+P MF Y+ I
Sbjct: 576 VIAYAIAGTIRIDFEKEPLGTNAKGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKI 635
Query: 423 TKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT 482
N WN L+ PS LY W+PKSTYI PP+F+++T+ P + AY LLN GDS+T
Sbjct: 636 ETVNASWNALAAPSDKLYLWNPKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVT 695
Query: 483 TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 542
TDHISPAG+I ++SPAA+YL RG+ R+FNSYGSRRGND IMARGTFANIRL+N+ LN
Sbjct: 696 TDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRLLNRFLNK 755
Query: 543 EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAV 602
+ P+TIH+P+GE L VFDAA RY+ EGH ++LAG EYGSGSSRDWAAKGP LLG+KAV
Sbjct: 756 Q-APQTIHLPSGETLDVFDAAERYQQEGHPLIVLAGKEYGSGSSRDWAAKGPFLLGIKAV 814
Query: 603 IAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV 662
+A+S+ERIHRSNLVGMG+IPL + PGE+A++ GLTG ERYTI +P +++ P V+V
Sbjct: 815 LAESYERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIIIPENLT---PRMHVQVK 871
Query: 663 TDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 697
D+GK+F VIRFDT+VEL YF +GGIL Y+IR +
Sbjct: 872 LDTGKTFQAVIRFDTDVELTYFHNGGILNYMIRKM 906
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/695 (58%), Positives = 523/695 (75%), Gaps = 4/695 (0%)
Query: 3 YPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVT 62
YPDS+VGTDSHTTMID MLGQP+SMVLP V+G++L GK VT
Sbjct: 196 YPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVT 255
Query: 63 ATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVT 122
+TD+VLT+T+ LR+ GVVG FVEF+G G+++LS+ADRATIANM PEYGAT FFPVD V+
Sbjct: 256 STDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVS 315
Query: 123 LQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRP 182
+ YL TGR ++ + I+ YL+A MF D+++P + ++ +EL+L+ VVPC SGPKRP
Sbjct: 316 ITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRP 375
Query: 183 HDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITS 242
D+V +++MK D+ +CL + GFKGF + E+ + F + T L HG VVIAAITS
Sbjct: 376 QDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITS 435
Query: 243 CTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGF 302
CTNTSNPSVMLGA L+AKKA + GL V P+IKTSL+PGSGVVT YLQ SG+ YL+ LGF
Sbjct: 436 CTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGF 495
Query: 303 HIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPL 362
+VGYGC TCIGNSG + + V AIT+ D+VA VLSGNRNFEGRVHP TRANYLASPPL
Sbjct: 496 DVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPL 555
Query: 363 VVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAI 422
V+AYA+AG++ IDFE EP+GV G+++FL+DIWP+ +E+ V ++ V+P MFK Y+ I
Sbjct: 556 VIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKI 615
Query: 423 TKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT 482
N WN L+ PS L+ W+ KSTYI PP+F+++T+ P + AY LLN GDS+T
Sbjct: 616 ETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVT 675
Query: 483 TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 542
TDHISPAG+I ++SPAA+YL RG+ R+FNSYGSRRGND +MARGTFANIRL+N+ LN
Sbjct: 676 TDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNK 735
Query: 543 EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAV 602
+ P+TIH+P+GE L VFDAA RY+ G ++LAG EYG+GSSRDWAAKGP LLG+KAV
Sbjct: 736 Q-APQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAV 794
Query: 603 IAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV 662
+A+S+ERIHRSNLVGMG+IPL + PGE+A+ GLTG ERYTI +P + ++P V+V
Sbjct: 795 LAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPEN---LKPQMKVQVK 851
Query: 663 TDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 697
D+GK+F V+RFDT+VEL YF +GGIL Y+IR +
Sbjct: 852 LDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKM 886
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 192/675 (28%), Positives = 277/675 (41%), Gaps = 126/675 (18%)
Query: 7 VVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 66
++GTDSHT M G P + P V+G KL+G L + D+
Sbjct: 161 LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDV 220
Query: 67 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 126
+L V +L G G VE++G G+ +S ATI NM E GAT FP +H +YL
Sbjct: 221 ILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYL 280
Query: 127 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRV 186
TGR+D E F D+ P S Y +E+NL E+ P ++GP P
Sbjct: 281 SKTGRADIANLADE--------FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAH 332
Query: 187 PLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNT 246
P+ E+ G KE G P +R + I SCTN+
Sbjct: 333 PVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSCTNS 361
Query: 247 SNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 306
S + AA VAK+A GL+ K + ++ PGS + ++ G + L +G ++
Sbjct: 362 SYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLA 418
Query: 307 YGCTTCIG--NSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPL 362
C CIG + DI I V S NRNF GR +P T A ++ SP +
Sbjct: 419 NACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTSPEI 468
Query: 363 VVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAI 422
V A A+AG++ + ET+ + GKDGKK L P ++E+ D + TY+
Sbjct: 469 VTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHP 520
Query: 423 TKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT 482
K + SG P S + F ++ L+ T
Sbjct: 521 PKDS---------SGQRVDVSPTSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCT 566
Query: 483 TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 542
TDHIS AG K F + N+ ++ N R N + N
Sbjct: 567 TDHISAAGPWLK-----------------FRGHLDNISNNLLIGAINSEN-RKANSVRNA 608
Query: 543 ---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV 599
E GP V D A YK G V++ YG GSSR+ +A P LG
Sbjct: 609 VTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGG 656
Query: 600 KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDV 659
+A+I KSF RIH +NL G++PL F + A+ + + ++ TI + + P
Sbjct: 657 RAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTI---QGLKDFAP---- 707
Query: 660 RVVTDSGKSFTCVIR 674
GK TC+I+
Sbjct: 708 ------GKPLTCIIK 716
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 192/675 (28%), Positives = 277/675 (41%), Gaps = 126/675 (18%)
Query: 7 VVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 66
++GTDSHT M G P + P V+G KL+G L + D+
Sbjct: 161 LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDV 220
Query: 67 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 126
+L V +L G G VE++G G+ +S ATI NM E GAT FP +H +YL
Sbjct: 221 ILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYL 280
Query: 127 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRV 186
TGR+D E F D+ P S Y +E+NL E+ P ++GP P
Sbjct: 281 SKTGRADIANLADE--------FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAH 332
Query: 187 PLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNT 246
P+ E+ G KE G P +R + I SCTN+
Sbjct: 333 PVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSCTNS 361
Query: 247 SNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 306
S + AA VAK+A GL+ K + ++ PGS + ++ G + L +G ++
Sbjct: 362 SYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLA 418
Query: 307 YGCTTCIG--NSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPL 362
C CIG + DI I V S NRNF GR +P T A ++ SP +
Sbjct: 419 NACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTSPEI 468
Query: 363 VVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAI 422
V A A+AG++ + ET+ + GKDGKK L P ++E+ D + TY+
Sbjct: 469 VTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHP 520
Query: 423 TKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT 482
K + SG P S + F ++ L+ T
Sbjct: 521 PKDS---------SGQRVDVSPTSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCT 566
Query: 483 TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 542
TDHIS AG K F + N+ ++ N R N + N
Sbjct: 567 TDHISAAGPWLK-----------------FRGHLDNISNNLLIGAINSEN-RKANSVRNA 608
Query: 543 ---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV 599
E GP V D A YK G V++ YG GSSR+ +A P LG
Sbjct: 609 VTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGG 656
Query: 600 KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDV 659
+A+I KSF RIH +NL G++PL F + A+ + + ++ TI + + P
Sbjct: 657 RAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTI---QGLKDFAP---- 707
Query: 660 RVVTDSGKSFTCVIR 674
GK TC+I+
Sbjct: 708 ------GKPLTCIIK 716
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 193/694 (27%), Positives = 287/694 (41%), Gaps = 119/694 (17%)
Query: 7 VVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 66
++GTDSHT M G P + P V+G KL+G L + D+
Sbjct: 160 LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDV 219
Query: 67 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 126
+L V +L G G VE++G G+ +S ATI NM E GAT FP +H +YL
Sbjct: 220 ILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYL 279
Query: 127 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRV 186
TGR+D E F D+ P Y +E+NL E+ P ++GP P
Sbjct: 280 SKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAH 331
Query: 187 PLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNT 246
P+ E+ G KE G P +R + I SCTN+
Sbjct: 332 PVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSCTNS 360
Query: 247 SNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 306
S + AA VAK+A GL+ K + ++ PGS + ++ G + L +G ++
Sbjct: 361 SYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLA 417
Query: 307 YGCTTCIG--NSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPL 362
C CIG + DI I V S NRNF GR +P T A ++ SP +
Sbjct: 418 NACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTSPEI 467
Query: 363 VVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAI 422
V A A+AG++ + ET+ + GKDGKK L P ++E+ D + TY+
Sbjct: 468 VTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHP 519
Query: 423 TKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT 482
K + SG A P S + F ++ L+ T
Sbjct: 520 PKDS---------SGQRVAVSPTSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCT 565
Query: 483 TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 542
TDHIS AG K F + N+ ++ N R N + N
Sbjct: 566 TDHISAAGPWLK-----------------FRGHLDNISNNLLIGAINIEN-RKANSVRNA 607
Query: 543 ---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV 599
E GP V D A YK G V++ YG G+SR+ +A P LG
Sbjct: 608 VTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGG 655
Query: 600 KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDV 659
+A+I KSF RIH +NL G++PL F + A+ + + ++ TI + + PG+ +
Sbjct: 656 RAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTI---QGLKDFAPGKPL 710
Query: 660 RVVTD--SGKSFTCVIRFD-TEVELAYFDHGGIL 690
+ + +G T ++ E ++ +F G L
Sbjct: 711 KCIIKHPNGTQETILLNHTFNETQIEWFRAGSAL 744
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 192/675 (28%), Positives = 276/675 (40%), Gaps = 126/675 (18%)
Query: 7 VVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 66
++GTDSHT M G P + P V+G KL+G L + D+
Sbjct: 161 LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDV 220
Query: 67 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 126
+L V +L G G VE++G G+ +S ATI NM E GAT FP +H +YL
Sbjct: 221 ILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYL 280
Query: 127 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRV 186
TGR+D E F D+ P S Y +E+NL E+ P ++GP P
Sbjct: 281 SKTGRADIANLADE--------FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAH 332
Query: 187 PLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNT 246
P+ E+ G KE G P +R + I SCTN+
Sbjct: 333 PVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSCTNS 361
Query: 247 SNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 306
S + AA VAK+A GL+ K + ++ PGS + ++ G + L +G ++
Sbjct: 362 SYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLA 418
Query: 307 YGCTTCIG--NSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPL 362
C CIG + DI I V S NRNF GR +P T A ++ SP +
Sbjct: 419 NACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTSPEI 468
Query: 363 VVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAI 422
V A A+AG++ + ET+ + GKDGKK L P ++E+ D + TY+
Sbjct: 469 VTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHP 520
Query: 423 TKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT 482
K + SG P S + F ++ L+ T
Sbjct: 521 PKDS---------SGQRVDVSPTSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCT 566
Query: 483 TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 542
TDHIS AG K F + N+ ++ N R N + N
Sbjct: 567 TDHISAAGPWLK-----------------FRGHLDNISNNLLIGAINSEN-RKANSVRNA 608
Query: 543 ---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV 599
E GP V D A YK G V++ YG GSSR+ A P LG
Sbjct: 609 VTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGSSREHRALEPRFLGG 656
Query: 600 KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDV 659
+A+I KSF RIH +NL G++PL F + A+ + + ++ TI + + P
Sbjct: 657 RAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTI---QGLKDFAP---- 707
Query: 660 RVVTDSGKSFTCVIR 674
GK TC+I+
Sbjct: 708 ------GKPLTCIIK 716
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 193/694 (27%), Positives = 286/694 (41%), Gaps = 119/694 (17%)
Query: 7 VVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 66
++GTDSHT M G P + P V+G KL+G L + D+
Sbjct: 161 LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDV 220
Query: 67 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 126
+L V +L G G VE++G G+ +S ATI NM E GAT FP +H +YL
Sbjct: 221 ILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYL 280
Query: 127 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRV 186
TGR+D E F D+ P Y +E+NL E+ P ++GP P
Sbjct: 281 SKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAH 332
Query: 187 PLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNT 246
P+ E+ G KE G P +R + I SCTN+
Sbjct: 333 PVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSCTNS 361
Query: 247 SNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 306
S + AA VAK+A GL+ K + ++ PGS + ++ G + L +G ++
Sbjct: 362 SYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLA 418
Query: 307 YGCTTCIG--NSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPL 362
C CIG + DI I V S NRNF GR +P T A ++ SP +
Sbjct: 419 NACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTSPEI 468
Query: 363 VVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAI 422
V A A+AG++ + ET+ + GKDGKK L P ++E+ D + TY+
Sbjct: 469 VTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHP 520
Query: 423 TKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT 482
K + SG P S + F ++ L+ T
Sbjct: 521 PKDS---------SGQRVDVSPTSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCT 566
Query: 483 TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 542
TDHIS AG K F + N+ ++ N R N + N
Sbjct: 567 TDHISAAGPWLK-----------------FRGHLDNISNNLLIGAINIEN-RKANSVRNA 608
Query: 543 ---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV 599
E GP V D A YK G V++ YG GSSR+ +A P LG
Sbjct: 609 VTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGSSREHSALEPRHLGG 656
Query: 600 KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDV 659
+A+I KSF RIH +NL G++PL F + A+ + + ++ TI + + PG+ +
Sbjct: 657 RAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTI---QGLKDFAPGKPL 711
Query: 660 RVVTD--SGKSFTCVIRFD-TEVELAYFDHGGIL 690
+ + +G T ++ E ++ +F G L
Sbjct: 712 KCIIKHPNGTQETILLNHTFNETQIEWFRAGSAL 745
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 192/694 (27%), Positives = 286/694 (41%), Gaps = 119/694 (17%)
Query: 7 VVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 66
++GTDSHT M G P + P V+G KL+G L + D+
Sbjct: 160 LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDV 219
Query: 67 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 126
+L V +L G G VE++G G+ +S ATI NM E GAT FP +H +YL
Sbjct: 220 ILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYL 279
Query: 127 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRV 186
TGR+D E F D+ P Y +E+NL E+ P ++GP P
Sbjct: 280 SKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAH 331
Query: 187 PLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNT 246
P+ E+ G KE G P +R + I SCTN+
Sbjct: 332 PVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSCTNS 360
Query: 247 SNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 306
S + AA VAK+A GL+ K + ++ PGS + ++ G + L +G ++
Sbjct: 361 SYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLA 417
Query: 307 YGCTTCIG--NSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPL 362
C CIG + DI I V S NRNF GR +P T A ++ SP +
Sbjct: 418 NACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTSPEI 467
Query: 363 VVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAI 422
V A A+AG++ + ET+ + GKDGKK L P ++E+ D + TY+
Sbjct: 468 VTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHP 519
Query: 423 TKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT 482
K + SG P S + F ++ L+ T
Sbjct: 520 PKDS---------SGQRVDVSPTSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCT 565
Query: 483 TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 542
TDHIS AG K F + N+ ++ N R N + N
Sbjct: 566 TDHISAAGPWLK-----------------FRGHLDNISNNLLIGAINIEN-RKANSVRNA 607
Query: 543 ---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV 599
E GP V D A YK G V++ YG G+SR+ +A P LG
Sbjct: 608 VTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGG 655
Query: 600 KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDV 659
+A+I KSF RIH +NL G++PL F + A+ + + ++ TI + + PG+ +
Sbjct: 656 RAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTI---QGLKDFAPGKPL 710
Query: 660 RVVTD--SGKSFTCVIRFD-TEVELAYFDHGGIL 690
+ + +G T ++ E ++ +F G L
Sbjct: 711 KCIIKHPNGTQETILLNHTFNETQIEWFRAGSAL 744
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 192/694 (27%), Positives = 286/694 (41%), Gaps = 119/694 (17%)
Query: 7 VVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 66
++GTDSHT M G P + P V+G KL+G L + D+
Sbjct: 161 LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDV 220
Query: 67 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 126
+L V +L G G VE++G G+ +S ATI NM E GAT FP +H +YL
Sbjct: 221 ILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYL 280
Query: 127 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRV 186
TGR+D E F D+ P Y +E+NL E+ P ++GP P
Sbjct: 281 SKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAH 332
Query: 187 PLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNT 246
P+ E+ G KE G P +R + I SCTN+
Sbjct: 333 PVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSCTNS 361
Query: 247 SNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 306
S + AA VAK+A GL+ K + ++ PGS + ++ G + L +G ++
Sbjct: 362 SYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLA 418
Query: 307 YGCTTCIG--NSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPL 362
C CIG + DI I V S NRNF GR +P T A ++ SP +
Sbjct: 419 NACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTSPEI 468
Query: 363 VVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAI 422
V A A+AG++ + ET+ + GKDGKK L P ++E+ D + TY+
Sbjct: 469 VTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHP 520
Query: 423 TKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT 482
K + SG P S + F ++ L+ T
Sbjct: 521 PKDS---------SGQRVDVSPTSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCT 566
Query: 483 TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 542
TDHIS AG K F + N+ ++ N R N + N
Sbjct: 567 TDHISAAGPWLK-----------------FRGHLDNISNNLLIGAINIEN-RKANSVRNA 608
Query: 543 ---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV 599
E GP V D A YK G V++ YG G+SR+ +A P LG
Sbjct: 609 VTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGG 656
Query: 600 KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDV 659
+A+I KSF RIH +NL G++PL F + A+ + + ++ TI + + PG+ +
Sbjct: 657 RAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTI---QGLKDFAPGKPL 711
Query: 660 RVVTD--SGKSFTCVIRFD-TEVELAYFDHGGIL 690
+ + +G T ++ E ++ +F G L
Sbjct: 712 KCIIKHPNGTQETILLNHTFNETQIEWFRAGSAL 745
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 192/694 (27%), Positives = 286/694 (41%), Gaps = 119/694 (17%)
Query: 7 VVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 66
++GTDSHT M G P + P V+G KL+G L + D+
Sbjct: 160 LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDV 219
Query: 67 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 126
+L V +L G G VE++G G+ +S ATI NM E GAT FP +H +YL
Sbjct: 220 ILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYL 279
Query: 127 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRV 186
TGR+D E F D+ P Y +E+NL E+ P ++GP P
Sbjct: 280 SKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAH 331
Query: 187 PLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNT 246
P+ E+ G KE G P +R + I SCTN+
Sbjct: 332 PVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSCTNS 360
Query: 247 SNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 306
S + AA VAK+A GL+ K + ++ PGS + ++ G + L +G ++
Sbjct: 361 SYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLA 417
Query: 307 YGCTTCIG--NSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPL 362
C CIG + DI I V S NRNF GR +P T A ++ SP +
Sbjct: 418 NACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTSPEI 467
Query: 363 VVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAI 422
V A A+AG++ + ET+ + GKDGKK L P ++E+ D + TY+
Sbjct: 468 VTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHP 519
Query: 423 TKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT 482
K + SG P S + F ++ L+ T
Sbjct: 520 PKDS---------SGQRVDVSPTSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCT 565
Query: 483 TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 542
TDHIS AG K F + N+ ++ N R N + N
Sbjct: 566 TDHISAAGPWLK-----------------FRGHLDNISNNLLIGAINIEN-RKANSVRNA 607
Query: 543 ---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV 599
E GP V D A YK G V++ YG GSS++ +A P LG
Sbjct: 608 VTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGSSQEHSALEPRHLGG 655
Query: 600 KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDV 659
+A+I KSF RIH +NL G++PL F + A+ + + ++ TI + + PG+ +
Sbjct: 656 RAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTI---QGLKDFAPGKPL 710
Query: 660 RVVTD--SGKSFTCVIRFD-TEVELAYFDHGGIL 690
+ + +G T ++ E ++ +F G L
Sbjct: 711 KCIIKHPNGTQETILLNHTFNETQIEWFRAGSAL 744
>pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud)
From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271)
Length = 170
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 18/130 (13%)
Query: 574 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 633
VI+AG +G GSSR+ A G+KAVIAKSF RI N + +G+IP+ A T
Sbjct: 54 VIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPII------ANT 107
Query: 634 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYV 693
+ + IDL EI V+T+ K+ C E E+ GG++ Y+
Sbjct: 108 DEIKDGDIVEIDLDK--EEI-------VITNKNKTIKCETPKGLEREI--LAAGGLVNYL 156
Query: 694 -IRNLINVRQ 702
R LI ++
Sbjct: 157 KKRKLIQSKK 166
>pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
pdb|1V7L|B Chain B, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
Length = 163
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 574 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 633
V++AG +G GSSR+ AA LG+ VIA+SF RI N + +G IPL +T
Sbjct: 54 VVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIG-IPLLL-----GKT 107
Query: 634 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYV 693
GL + T++ + E+R G ++ + ++R GGIL+Y+
Sbjct: 108 EGLKDGDLVTVNWET--GEVRKGDEILMFEPLEDFLLEIVR-----------EGGILEYI 154
Query: 694 IR 695
R
Sbjct: 155 RR 156
>pdb|2HCU|A Chain A, Crystal Structure Of Smu.1381 (Or Leud) From Streptococcus
Mutans
Length = 213
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 573 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 629
++++ G +G+GSSR+ AA G K ++A SF IH +N + GI+P+ +P E
Sbjct: 87 SILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPI-IQPKE 142
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 567 KNEGHDTVILAGAE-YGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPL 623
K E ++ IL E +GSGSSR+ A + G++A+IA SF I ++N +G G++ +
Sbjct: 67 KKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTI 124
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 574 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 620
+I+ G +G GSSR+ A G G+ VIA+SF RI N + +G+
Sbjct: 56 IIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGL 102
>pdb|3H5H|A Chain A, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5H|B Chain B, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 189
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 573 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 621
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3H5J|A Chain A, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5J|B Chain B, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 171
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 573 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 621
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3H5E|A Chain A, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
pdb|3H5E|B Chain B, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
Length = 159
Score = 36.2 bits (82), Expect = 0.069, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 573 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 621
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3Q8D|A Chain A, E. Coli Reco Complex With Ssb C-terminus
pdb|3Q8D|B Chain B, E. Coli Reco Complex With Ssb C-terminus
Length = 242
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 297 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR 347
L HLG+ G T C G+ +DD + E A+V+ N+ F GR
Sbjct: 139 LGHLGY---GVNFTHCAGSGEPVDDTMTYRYREEKGFIASVVIDNKTFTGR 186
>pdb|2HIH|A Chain A, Crystal Structure Of Staphylococcus Hyicus Lipase
pdb|2HIH|B Chain B, Crystal Structure Of Staphylococcus Hyicus Lipase
Length = 431
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 638 GHERYTIDLPSSVSEIRPGQDVRVVTDS--GKSFTCV---IRFDTEVELAY-FDHGGILQ 691
GHERY + + +PG V + S G++ + +RF + E+AY HGGI+
Sbjct: 132 GHERYGKTYEGVLKDWKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIIS 191
Query: 692 YVIR 695
+ +
Sbjct: 192 ELFK 195
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 75/378 (19%), Positives = 127/378 (33%), Gaps = 96/378 (25%)
Query: 1 MLYPDSV-VGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRD 59
ML PD+V G DSHT + M + +P V + GK++
Sbjct: 486 MLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGV---MPLDMPESVLVRFKGKMQP 542
Query: 60 GVTATDLV------------LTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSP 107
G+T DLV LTV + +K+ G +E EG+ +L + + + S
Sbjct: 543 GITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASA 600
Query: 108 EYGAT-----------MGFFPVDHVTLQYLKLTGRSD-----DTVSMIESYLRANKMFVD 151
E A + + + V L+++ G D + +E +L ++
Sbjct: 601 ERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEA 660
Query: 152 YSEPQSERVYSSYLELNLEEVV-PCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAI 210
++ + V ++++L ++ P + P P D PL+ ++ +
Sbjct: 661 DADAEYAAV----IDIDLADIKEPILCAPNDPDDARPLSAVQGE---------------- 700
Query: 211 PKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 270
K+ E I SC G L A K L +
Sbjct: 701 ------KIDE-----------------VFIGSCMTNIGHFRAAGKLLDAHKG---QLPTR 734
Query: 271 PWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITEN 330
W+ AP + + L G G I GC+ C+GN + D
Sbjct: 735 LWV----APPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADG-------- 782
Query: 331 DIVAAAVLSGNRNFEGRV 348
A V + RNF R+
Sbjct: 783 ---ATVVSTSTRNFPNRL 797
>pdb|4I1D|A Chain A, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|B Chain B, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|C Chain C, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|D Chain D, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
Length = 324
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 397 PSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSG 437
PS++++ + + +PD + A + G P+W+ + P+G
Sbjct: 25 PSAKKLGITINQDSIPDAWPAIKTQVGSGKPIWDVVDTPTG 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,811,556
Number of Sequences: 62578
Number of extensions: 963499
Number of successful extensions: 1937
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1861
Number of HSP's gapped (non-prelim): 50
length of query: 702
length of database: 14,973,337
effective HSP length: 106
effective length of query: 596
effective length of database: 8,340,069
effective search space: 4970681124
effective search space used: 4970681124
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)