Query 005323
Match_columns 702
No_of_seqs 342 out of 2290
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 21:40:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00070 aconitate hydratase 100.0 1E-210 3E-215 1800.2 63.2 700 1-700 237-936 (936)
2 PTZ00092 aconitate hydratase-l 100.0 1E-207 3E-212 1773.5 61.3 693 1-699 205-897 (898)
3 KOG0452 RNA-binding translatio 100.0 2E-209 4E-214 1673.7 42.4 695 1-698 198-892 (892)
4 TIGR01341 aconitase_1 aconitat 100.0 8E-206 2E-210 1755.8 60.3 688 1-698 185-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 2E-205 3E-210 1758.4 60.8 681 1-699 202-889 (889)
6 PRK09277 aconitate hydratase; 100.0 4E-205 8E-210 1752.1 61.3 682 1-699 202-887 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 2E-199 5E-204 1696.4 59.5 662 1-699 189-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 3E-197 7E-202 1658.9 55.1 668 1-699 190-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 6E-155 1E-159 1332.1 47.2 587 1-693 144-745 (745)
10 PRK07229 aconitate hydratase; 100.0 2E-145 4E-150 1246.8 46.1 534 2-698 109-645 (646)
11 TIGR01342 acon_putative aconit 100.0 1E-144 2E-149 1238.4 43.5 540 2-699 106-654 (658)
12 TIGR00139 h_aconitase homoacon 100.0 3E-133 7E-138 1142.2 42.7 563 1-697 112-712 (712)
13 PRK11413 putative hydratase; P 100.0 5E-131 1E-135 1129.6 42.4 575 2-695 139-750 (751)
14 KOG0453 Aconitase/homoaconitas 100.0 2E-121 4E-126 998.0 38.7 592 1-695 177-774 (778)
15 TIGR00170 leuC 3-isopropylmala 100.0 3E-103 8E-108 866.3 30.8 341 1-373 117-460 (465)
16 PRK05478 isopropylmalate isome 100.0 8E-103 2E-107 864.8 31.0 344 1-381 117-463 (466)
17 PRK12466 isopropylmalate isome 100.0 9E-103 2E-107 864.3 30.8 344 1-381 119-465 (471)
18 cd01583 IPMI 3-isopropylmalate 100.0 8E-102 2E-106 837.8 29.6 300 2-372 82-382 (382)
19 cd01584 AcnA_Mitochondrial Aco 100.0 8E-101 2E-105 835.0 29.9 323 1-372 87-412 (412)
20 cd01585 AcnA_Bact Aconitase ca 100.0 3E-100 6E-105 823.7 29.3 301 1-372 79-380 (380)
21 PF00330 Aconitase: Aconitase 100.0 2E-100 5E-105 847.3 27.3 343 2-370 119-465 (465)
22 TIGR01343 hacA_fam homoaconita 100.0 1.9E-99 4E-104 824.2 29.5 301 2-373 108-409 (412)
23 COG0065 LeuC 3-isopropylmalate 100.0 1.5E-99 3E-104 802.4 27.3 305 2-373 112-417 (423)
24 PRK00402 3-isopropylmalate deh 100.0 2.7E-99 6E-104 824.2 29.3 301 2-373 111-412 (418)
25 TIGR02086 IPMI_arch 3-isopropy 100.0 6.5E-99 1E-103 820.0 28.6 302 1-373 106-408 (412)
26 TIGR02083 LEU2 3-isopropylmala 100.0 3.8E-98 8E-103 813.5 30.2 304 1-373 110-414 (419)
27 cd01586 AcnA_IRP Aconitase A c 100.0 4E-98 9E-103 805.9 28.1 286 2-372 119-404 (404)
28 cd01582 Homoaconitase Homoacon 100.0 3.6E-92 7.8E-97 754.9 26.5 283 1-372 79-363 (363)
29 cd01581 AcnB Aconitate hydrata 100.0 1.8E-90 3.9E-95 756.6 27.2 303 2-372 104-436 (436)
30 cd01351 Aconitase Aconitase ca 100.0 8.2E-87 1.8E-91 726.0 29.4 305 5-372 85-389 (389)
31 PRK09238 bifunctional aconitat 100.0 9.6E-84 2.1E-88 739.4 29.4 306 1-373 475-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 1.9E-82 4.2E-87 726.5 28.8 304 2-373 477-810 (844)
33 PLN00094 aconitate hydratase 2 100.0 8.6E-81 1.9E-85 711.0 29.3 306 1-373 549-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 5.7E-65 1.2E-69 487.4 11.8 170 476-645 1-170 (171)
35 KOG0454 3-isopropylmalate dehy 100.0 1.8E-49 3.9E-54 421.5 15.1 439 140-696 12-461 (502)
36 COG1049 AcnB Aconitase B [Ener 100.0 5.3E-42 1.2E-46 375.0 20.9 316 1-407 477-822 (852)
37 COG0066 LeuD 3-isopropylmalate 100.0 4.2E-41 9E-46 328.5 9.3 164 475-698 12-180 (191)
38 cd01578 AcnA_Mitochon_Swivel M 100.0 1.7E-40 3.7E-45 314.6 9.0 141 476-645 1-141 (149)
39 PRK14023 homoaconitate hydrata 100.0 4.5E-40 9.7E-45 320.6 10.8 160 474-702 4-163 (166)
40 PRK00439 leuD 3-isopropylmalat 100.0 6.1E-40 1.3E-44 319.3 11.1 157 474-698 4-160 (163)
41 TIGR02087 LEUD_arch 3-isopropy 100.0 1.5E-39 3.3E-44 313.3 9.7 152 474-696 3-154 (154)
42 TIGR02084 leud 3-isopropylmala 100.0 2E-39 4.4E-44 312.8 9.7 154 474-695 3-156 (156)
43 PLN00072 3-isopropylmalate iso 100.0 1.4E-37 3E-42 316.7 10.8 169 467-698 68-242 (246)
44 TIGR00171 leuD 3-isopropylmala 100.0 4.7E-37 1E-41 304.2 7.6 164 470-687 8-174 (188)
45 PRK01641 leuD isopropylmalate 100.0 7.2E-36 1.6E-40 298.6 8.3 161 470-687 8-172 (200)
46 cd01579 AcnA_Bact_Swivel Bacte 100.0 2.9E-35 6.3E-40 273.2 5.3 121 476-646 1-121 (121)
47 PF00694 Aconitase_C: Aconitas 100.0 8.7E-35 1.9E-39 272.7 2.2 127 501-627 4-130 (131)
48 cd01577 IPMI_Swivel Aconatase- 100.0 3.1E-31 6.6E-36 234.0 4.8 73 573-646 19-91 (91)
49 PRK09238 bifunctional aconitat 100.0 1.1E-29 2.3E-34 293.7 12.3 174 460-700 158-344 (835)
50 cd01674 Homoaconitase_Swivel H 100.0 1.8E-30 3.8E-35 240.3 3.5 100 477-627 2-101 (129)
51 cd00404 Aconitase_swivel Aconi 100.0 6.3E-30 1.4E-34 224.2 5.8 71 573-645 17-87 (88)
52 TIGR00117 acnB aconitate hydra 99.9 5.9E-26 1.3E-30 262.1 11.3 168 464-699 163-344 (844)
53 cd01576 AcnB_Swivel Aconitase 99.9 2.2E-26 4.7E-31 215.5 4.8 55 572-626 51-117 (131)
54 PRK14812 hypothetical protein; 99.8 2.7E-21 5.8E-26 178.8 7.1 90 583-687 2-92 (119)
55 PLN00094 aconitate hydratase 2 99.8 8.9E-21 1.9E-25 219.2 10.6 120 561-699 283-416 (938)
56 KOG0454 3-isopropylmalate dehy 99.8 1.1E-21 2.3E-26 210.2 2.5 297 5-371 193-498 (502)
57 PF06434 Aconitase_2_N: Aconit 98.7 2.7E-08 5.8E-13 98.6 6.6 163 473-700 2-177 (204)
58 COG1049 AcnB Aconitase B [Ener 96.6 0.0041 8.8E-08 71.2 7.4 119 561-698 212-344 (852)
59 PF04412 DUF521: Protein of un 95.9 0.025 5.3E-07 63.4 8.2 71 231-309 286-356 (400)
60 COG1679 Predicted aconitase [G 93.9 0.15 3.3E-06 56.1 7.4 71 231-309 286-356 (403)
61 cd01355 AcnX Putative Aconitas 90.9 0.57 1.2E-05 52.5 7.2 70 234-314 278-347 (389)
62 PF00694 Aconitase_C: Aconitas 75.5 1.2 2.6E-05 42.8 0.8 31 470-512 8-38 (131)
63 COG0311 PDX2 Predicted glutami 36.7 39 0.00085 34.5 3.7 76 271-349 37-114 (194)
64 TIGR00829 FRU PTS system, fruc 32.4 38 0.00083 30.0 2.6 31 239-270 2-32 (85)
65 COG1445 FrwB Phosphotransferas 29.0 59 0.0013 31.0 3.3 33 237-270 4-36 (122)
66 COG1833 Uri superfamily endonu 22.3 1.7E+02 0.0038 28.3 5.1 26 290-315 79-104 (132)
67 PRK10427 putative PTS system f 21.9 1E+02 0.0022 29.0 3.5 33 237-270 5-37 (114)
68 TIGR01917 gly_red_sel_B glycin 20.9 1.2E+02 0.0026 34.8 4.4 52 263-314 296-351 (431)
No 1
>PLN00070 aconitate hydratase
Probab=100.00 E-value=1.5e-210 Score=1800.18 Aligned_cols=700 Identities=90% Similarity=1.433 Sum_probs=671.5
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
++|||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++
T Consensus 237 ~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~Gvv 316 (936)
T PLN00070 237 ILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 316 (936)
T ss_pred cccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||.+++++++++|+|+++||++...+|++|.
T Consensus 317 Gk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~ 396 (936)
T PLN00070 317 GKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERV 396 (936)
T ss_pred eEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997556899999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|||+||||++|||++||+++.++|.+++..+.+.+|+..+.+++...++++++|++..+++|+|+||||
T Consensus 397 Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~I 476 (936)
T PLN00070 397 YSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAI 476 (936)
T ss_pred eeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhcccccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEE
Confidence 99999999999999999999999999999999999988876555444433322223335667899999999999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++||+|++||||+||||++++.
T Consensus 477 gSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~ 556 (936)
T PLN00070 477 TSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELD 556 (936)
T ss_pred ECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCChH
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSE 400 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ 400 (702)
++++++|.+|+++++||||+||||+||||+..+++|||||++||||||+|+|++|+++||+|+++||++|||+||||+.+
T Consensus 557 ~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ 636 (936)
T PLN00070 557 ESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNE 636 (936)
T ss_pred chhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCCcccCCCCCCCccCCCCCEecccCCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCCC
Q 005323 401 EVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480 (702)
Q Consensus 401 ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gdn 480 (702)
||++++.+.++|++|++.|++++.+++.|++++.|++..|+||++||||++||||++++..++.+++|+++|+|+++|||
T Consensus 637 ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~ 716 (936)
T PLN00070 637 EVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDS 716 (936)
T ss_pred HHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCCCcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred CCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccc
Q 005323 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVF 560 (702)
Q Consensus 481 itTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~ 560 (702)
||||||||||+|+++||||+||+++|+.++|||||||||||||||+||+|+|+|++|+|++|.++++|+|+|+|+.++||
T Consensus 717 iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~ 796 (936)
T PLN00070 717 ITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVF 796 (936)
T ss_pred CcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchhhhceeccchhhhhhhcCCCcCCeeEecCCCceeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCe
Q 005323 561 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 640 (702)
Q Consensus 561 ~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~e 640 (702)
|+|++|+++|+|+|||||+|||||||||||||++++||||||||+||+||||+||+|||||||+|.++++++++.+.+++
T Consensus 797 daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaVIA~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~ 876 (936)
T PLN00070 797 DAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHE 876 (936)
T ss_pred HHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred eEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhhhh
Q 005323 641 RYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLINV 700 (702)
Q Consensus 641 ~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~~ 700 (702)
.++|+++.....++||++++++..+|++|++.++++|+.|++|+++||+|||++++++++
T Consensus 877 ~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~~~~~~GGiL~~v~r~~~~~ 936 (936)
T PLN00070 877 RYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYFDHGGILPYVIRNLIKQ 936 (936)
T ss_pred eEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHHHHHHcCCHHHHHHHHHhhC
Confidence 999998766667899998888777889999999999999999999999999999998753
No 2
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=1.4e-207 Score=1773.49 Aligned_cols=693 Identities=70% Similarity=1.161 Sum_probs=660.1
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
++|||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++
T Consensus 205 ~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaeaamlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~v 284 (898)
T PTZ00092 205 LLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVV 284 (898)
T ss_pred cccCCeEEecCCCCCCCCcccccEecccHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCcc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||+|||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++++++|+|.++|++|++ +|++|.
T Consensus 285 gk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~---~D~da~ 361 (898)
T PTZ00092 285 GKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT---YAEQIE 361 (898)
T ss_pred ceEEEEEccccccCcHHHhhhhhccccccCceEEEecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhc---CCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984 688999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|||+||||++|||++||+++.++|.+++....+.+++.+++.+..+..++.++|.++++.||+|++|||
T Consensus 362 Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~I 441 (898)
T PTZ00092 362 YSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAI 441 (898)
T ss_pred eeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEE
Confidence 99999999999999999999999999999999998887765444444444322211112334578889999999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++||.|++||||+|+||++++.
T Consensus 442 gSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~ 521 (898)
T PTZ00092 442 TSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLD 521 (898)
T ss_pred eCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCccccccCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCChH
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSE 400 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ 400 (702)
++++++|.+|+++++||||+||||+||||+..+++|||||++||||||+|+|++|+++||++++++|++|||+||||+.+
T Consensus 522 ~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ 601 (898)
T PTZ00092 522 PEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSRE 601 (898)
T ss_pred chhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCceecccccCCcccCCCCCEeeeeCCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCCC
Q 005323 401 EVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480 (702)
Q Consensus 401 ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gdn 480 (702)
||++++..+++|++|.+.|..++++++.|++++.|.++.|+||++||||++||||++++..++...+|.++|+|+++|||
T Consensus 602 ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~ 681 (898)
T PTZ00092 602 EIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDS 681 (898)
T ss_pred HHHHHHHccCCHHHhhHhhhcccCCchhhhhccCCCCCccccCCCCCcccCCCCccccccCCCCCCCccCcEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999998877777899999999999999
Q ss_pred CCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccc
Q 005323 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVF 560 (702)
Q Consensus 481 itTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~ 560 (702)
||||||||||+|+++||||+||+++|+.++|||||||||||||||+||+|+|+|++|+|. |.++++|+|+|+|+.|+||
T Consensus 682 iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm~RgtF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~ 760 (898)
T PTZ00092 682 ITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMVRGTFANIRLINKLC-GKVGPNTVHVPTGEKMSIY 760 (898)
T ss_pred CcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhhcceeccccceeeeec-cCCCCceEeCCCCcEecHH
Confidence 999999999999999999999999999999999999999999999999999999999999 8889999999999999999
Q ss_pred cHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCe
Q 005323 561 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 640 (702)
Q Consensus 561 ~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~e 640 (702)
|+|++|+++|+|+|||||+|||||||||||||++++||||||||+||+||||+||+|||||||+|.++++++++++.+++
T Consensus 761 daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lGvraVIA~SF~rIh~~Nli~~GvlPL~f~~~~~~~~l~~~~~~ 840 (898)
T PTZ00092 761 DAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAESFERIHRSNLVGMGILPLQFLNGENADSLGLTGKE 840 (898)
T ss_pred HHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhhhhcCcceeecCCcccHHHhcCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhhh
Q 005323 641 RYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 699 (702)
Q Consensus 641 ~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 699 (702)
.++|++.. ..++|+++++++..+|++|++.++++|+.|++|+++||+|||+++++++
T Consensus 841 ~i~i~~~~--~~l~p~~~v~v~~~~G~~~~~~~r~dt~~e~~y~~~GGiL~yv~~~~~~ 897 (898)
T PTZ00092 841 QFSIDLNS--GELKPGQDVTVKTDTGKTFDTILRIDTEVEVEYFKHGGILQYVLRKLVK 897 (898)
T ss_pred EEEEeccc--cccCCCCeEEEEeCCCcEEEEEEeCCCHHHHHHHHcCCHHHHHHHHHhc
Confidence 99998622 3588999888877789999999999999999999999999999999875
No 3
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-209 Score=1673.67 Aligned_cols=695 Identities=73% Similarity=1.207 Sum_probs=684.9
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
+||||.||||||||+|++|||++||||||+|++++|+|||+.|.+|+|||.+|+|+|+++||++|++|+|+++||+.|++
T Consensus 198 ~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVv 277 (892)
T KOG0452|consen 198 LLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVV 277 (892)
T ss_pred eecccccccccCcceeecccceeeccccceehhhhhhcCchheecccceeEEeccccCCCceeehhhhhHHHHHHHhccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||||||||+|+++||+.||+||+||+||||||.||||+|+.|+.||+.|||+++.++.+|.|+|+.+||+++..++.++.
T Consensus 278 GKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~ 357 (892)
T KOG0452|consen 278 GKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQYLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPV 357 (892)
T ss_pred eeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHHHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877778999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|.+++++||++|+|+|++|++|+++++|++++++|..||++++||+|+.|+++.|.+.+.+.|+|.+++|+||+|+||+|
T Consensus 358 yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgFKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAi 437 (892)
T KOG0452|consen 358 YTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAI 437 (892)
T ss_pred eeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCcccccccccChhHhhceEEEEECCeeeEeccCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
+||||+|||.+|.+|++|||||++.|++|+||+|++++|||..|..||.++|++++|.++||.|++|||++||||+|++.
T Consensus 438 tSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~ 517 (892)
T KOG0452|consen 438 TSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLD 517 (892)
T ss_pred ecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhhhhhhhccchhHHHhcCceeeccccceeccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCChH
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSE 400 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ 400 (702)
+++..+|.+|++++++|+|+|||||||+||.+++||||||++|+||||+|++++||+++|+|+++||+.|||+||||+++
T Consensus 518 e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvvaYaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~ 597 (892)
T KOG0452|consen 518 EAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVAYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTRE 597 (892)
T ss_pred HHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhhhhhcceeecceeccccccCCCCCeEEEeecCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCCC
Q 005323 401 EVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480 (702)
Q Consensus 401 ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gdn 480 (702)
||+++++++|.|+||++.|+.|..|++.|+++++|++.+|+||++||||++||||++|+..++.++.|++|+||+.+||+
T Consensus 598 Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDS 677 (892)
T KOG0452|consen 598 EVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPKSTYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDS 677 (892)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCCCceecCCccccccccCCCCcccccceeEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccc
Q 005323 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVF 560 (702)
Q Consensus 481 itTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~ 560 (702)
||||||||||+|.++|||++||..||++++|||||||||||+++|+||+|+|+|+.|+|.. +.+|.|+|+|+||.++||
T Consensus 678 vTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vMaRGTFANIrlvNkl~~-k~gP~TvHiPsge~ldvF 756 (892)
T KOG0452|consen 678 VTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMARGTFANIRLVNKLLS-KVGPKTVHIPSGEELDVF 756 (892)
T ss_pred ccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhhhcccchhhHHHHHHhc-ccCCceEecCCCCeecHh
Confidence 9999999999999999999999999999999999999999999999999999999999987 789999999999999999
Q ss_pred cHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCe
Q 005323 561 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 640 (702)
Q Consensus 561 ~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~e 640 (702)
|+|++|+++|.|.||+||+.|||||||+|||++|.++|||||||+||+||||+||++|||+||+|..+++++.|+++|.|
T Consensus 757 dAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAViaeS~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E 836 (892)
T KOG0452|consen 757 DAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRE 836 (892)
T ss_pred hHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHHHHHHHHHhhccccceeeeeeecCCCChhhcCcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhh
Q 005323 641 RYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 698 (702)
Q Consensus 641 ~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 698 (702)
.++|.+++. .++|||.++|+..+|+.|.+.+++|++.|+.|+++||||||+.|++.
T Consensus 837 ~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy~~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 837 RYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYYKNGGILNYMIRKLS 892 (892)
T ss_pred eEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEEecCCcHHHHHhhcC
Confidence 999999873 39999999999888999999999999999999999999999999863
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=7.7e-206 Score=1755.79 Aligned_cols=688 Identities=65% Similarity=1.069 Sum_probs=651.0
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
++|||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++
T Consensus 185 ~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~v 264 (876)
T TIGR01341 185 TAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGVTATDLVLTVTQMLRKKGVV 264 (876)
T ss_pred eeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||+|||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++++++++|+|+|++|+. .+++|.
T Consensus 265 gk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~l~~~y~k~~~l~~~---d~~~a~ 341 (876)
T TIGR01341 265 GKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVELVEKYARAQGLFYD---DSEEPR 341 (876)
T ss_pred eEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHHHHHHHHHhcccccC---CCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999964 127999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|||+||||++|||++||+++..+|.+++....+.+|+.+..+ ...+.++|++..|.||+|++|||
T Consensus 342 Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~l~~g~I~~a~I 417 (876)
T TIGR01341 342 YTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE----PLKKKVNGQNKQLEDGAVVIAAI 417 (876)
T ss_pred eeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh----hhheeccCcceecCCCcEEEEEe
Confidence 99999999999999999999999999999999998877755433223322111 01122468888999999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++||.|++||||+|+||+|++.
T Consensus 418 gSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~i~~~GCg~CiG~~g~l~ 497 (876)
T TIGR01341 418 TSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEELGFNLVGYGCTTCIGNSGPLP 497 (876)
T ss_pred eCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEecCCccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCChH
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSE 400 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ 400 (702)
++++++|.+++++.+||||+||||+||||+..+++|||||++||||||+|+|++|+++||++.+++|++|||+||||+.+
T Consensus 498 ~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ 577 (876)
T TIGR01341 498 KYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINLYTEPIGTDKDGKPVYLRDIWPSNK 577 (876)
T ss_pred cchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCccCCCcccCCCCCeeeccCCCCChH
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCCC
Q 005323 401 EVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480 (702)
Q Consensus 401 ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gdn 480 (702)
||++++.+.++|+||++.|.+++.+++.|++++.|.+..|+||++||||++||||++++..++...+|+++|+|+++|||
T Consensus 578 ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~ 657 (876)
T TIGR01341 578 EIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEEMKQDPEEVEDIKGARILLLLGDS 657 (876)
T ss_pred HHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCCccccCCCCCCCccCCEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999998777777899999999999999
Q ss_pred CCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccc
Q 005323 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVF 560 (702)
Q Consensus 481 itTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~ 560 (702)
||||||||||+|+++||||+||+++|++++|||||||||||||+|+||+|+|+|+.|+|++|.++++|+|+|+|+.++||
T Consensus 658 iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~N~l~~g~egg~t~~~p~g~~~~i~ 737 (876)
T TIGR01341 658 ITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMVKGKEGGYTVHFPDGKVASVY 737 (876)
T ss_pred CcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhhhhcccCccCceeEecCCCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCe
Q 005323 561 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 640 (702)
Q Consensus 561 ~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~e 640 (702)
|+|++|+++|+|+|||||+|||||||||||+|++++|||+||||+||+||||+||+|||||||+|+++++|++|+++++|
T Consensus 738 daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~~~Gilpl~~~~~~~~~~l~l~g~e 817 (876)
T TIGR01341 738 DAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLVGMGVIPLQFPQGEDAETLGLTGDE 817 (876)
T ss_pred HHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHhhcCcceEecCCCCCHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccCCCCceEEEEc--CCC--eEEEEEEecCCHHHHHHHHhcCHHHHHHHHhh
Q 005323 641 RYTIDLPSSVSEIRPGQDVRVVT--DSG--KSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 698 (702)
Q Consensus 641 ~~~idl~~~~~~~~~g~~~~v~~--~~g--~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 698 (702)
.++|.- ..+++||++++++. .+| .+|.+.+++||+.|++|+++||+||||+|+++
T Consensus 818 ~~~i~~---~~~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yv~r~~~ 876 (876)
T TIGR01341 818 TIDIDG---IKDLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVLRKFL 876 (876)
T ss_pred eEEEcC---ccccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHhhC
Confidence 999852 22578998887653 577 46788889999999999999999999999874
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1.5e-205 Score=1758.44 Aligned_cols=681 Identities=60% Similarity=1.013 Sum_probs=646.6
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
++||||||||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++
T Consensus 202 ~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlgq~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~v 281 (889)
T PRK12881 202 VAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVV 281 (889)
T ss_pred eecCCeEEecCCCCCCCccccceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||+|||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++++++|+|.|++++|.+ +|++|.
T Consensus 282 gk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~---~d~~a~ 358 (889)
T PRK12881 282 GKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPVDEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD---PKAEPR 358 (889)
T ss_pred eEEEEEECccccccCHHHHHHHhcccHhhCceEEEecCChhHHHHHHhcccchHHHHHHHHHHHHHHhhcC---cCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 789999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceecc---CCCcccccCCCEEE
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNF---HGTPAQLRHGDVVI 237 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~---~g~~~~~~~g~v~i 237 (702)
|+++++||||+|||+||||++|||++||++++++|.+++.+....++ +.+ .+....+.||+|++
T Consensus 359 Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~g~V~~ 425 (889)
T PRK12881 359 YTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENG-------------FAKKAQTSNGVDLPDGAVAI 425 (889)
T ss_pred eeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHHhhhHHHhhh-------------hhcccccCCCccccCccEEE
Confidence 99999999999999999999999999999999998877643221111 122 23456788999999
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCC
Q 005323 238 AAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSG 317 (702)
Q Consensus 238 a~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g 317 (702)
|||||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++||.|++||||+|+||+|
T Consensus 426 a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g 505 (889)
T PRK12881 426 AAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSG 505 (889)
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCC
Q 005323 318 DIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWP 397 (702)
Q Consensus 318 ~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP 397 (702)
++.++++++|.+|+++++||||+||||+||||+..+++|||||++||||||+|+|++|+++||+|+++||++|||+||||
T Consensus 506 ~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP 585 (889)
T PRK12881 506 PLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLASPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWP 585 (889)
T ss_pred CCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEECCHHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCC
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeec
Q 005323 398 SSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNF 477 (702)
Q Consensus 398 ~~~ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~ 477 (702)
+.+|+++++.+.+++++|++.|++++.+++.|+++++|.++.|+||++||||++||||+.+...++++.+|+++|+|+++
T Consensus 586 ~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~ 665 (889)
T PRK12881 586 SSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVL 665 (889)
T ss_pred ChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCCeeccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999888777777899999999999
Q ss_pred CCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCccc
Q 005323 478 GDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKL 557 (702)
Q Consensus 478 gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~ 557 (702)
|||||||||||||+|+++||||+||+++||.++||||||+||||||||+||+|+|+|++|+|.+|.++++|+|+|+|+.+
T Consensus 666 gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~rRgN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~ 745 (889)
T PRK12881 666 GDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVL 745 (889)
T ss_pred CCCCcccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHhhhhccccCcccceeccccccCeeEeCCCCcEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCC
Q 005323 558 SVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLT 637 (702)
Q Consensus 558 ~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~ 637 (702)
+|||+|++|+++|+|.|||||+|||||||||||||++++|||+||||+||+||||+||+|||||||+|+++.+++.|.+.
T Consensus 746 ~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lGv~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~ 825 (889)
T PRK12881 746 SIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLT 825 (889)
T ss_pred eHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhhhhcCcceEEeCCccchhhcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEecCCCcccCCCCceEEEE--cCCCe--EEEEEEecCCHHHHHHHHhcCHHHHHHHHhhh
Q 005323 638 GHERYTIDLPSSVSEIRPGQDVRVV--TDSGK--SFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 699 (702)
Q Consensus 638 ~~e~~~idl~~~~~~~~~g~~~~v~--~~~g~--~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 699 (702)
+++.++|+... ..++||+++++. ..+|+ ++.+.++++++.|++|+++||+|+|+++++++
T Consensus 826 g~d~i~I~~~~--~~i~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~e~e~~~aGGiL~yv~~~~~~ 889 (889)
T PRK12881 826 GGETFDIEGLP--GEIKPRQDVTLVIHRADGSTERVPVLCRIDTPIEVDYYKAGGILPYVLRQLLA 889 (889)
T ss_pred CCCEEEEeCCc--cccCCCCeEEEEEEeCCCCEEEEEEEeccCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 99999998543 257899888753 45775 45666777899999999999999999999863
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=3.5e-205 Score=1752.05 Aligned_cols=682 Identities=61% Similarity=1.054 Sum_probs=649.8
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
++|||+||||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++
T Consensus 202 ~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~v 281 (888)
T PRK09277 202 VAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVV 281 (888)
T ss_pred eeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||+|||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++++++|+|.+++++|+. +|++|.
T Consensus 282 gk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~---~D~~a~ 358 (888)
T PRK09277 282 GKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRD---PLEEPV 358 (888)
T ss_pred cEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCChhHHHHHHhcCCChHHHHHHHHHHHHHhhhcc---CCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999973 689999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|+|+||||++|||++||+++..+|.+++... .+++ ..+..++|....+.||+|++|||
T Consensus 359 Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~~~~--~~~~---------~~~~~~~g~~~~l~~g~V~~a~I 427 (888)
T PRK09277 359 YTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAELG--VQGF---------GLDEAEEGEDYELPDGAVVIAAI 427 (888)
T ss_pred EEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhchhh--hhhh---------hhhhhhcCCCccccCCceEEEEE
Confidence 999999999999999999999999999999998876543211 1111 12345688889999999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++||.|++||||+|+||++++.
T Consensus 428 GSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~ 507 (888)
T PRK09277 428 TSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLP 507 (888)
T ss_pred eCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCCCHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCChH
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSE 400 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ 400 (702)
++++++|.+|+++++||||+||||+||||+..+++|||||++||||||+|+|++|+++||+|+++||++|||+||||+.+
T Consensus 508 ~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ 587 (888)
T PRK09277 508 PEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASPPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDE 587 (888)
T ss_pred chhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCCC
Q 005323 401 EVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480 (702)
Q Consensus 401 ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gdn 480 (702)
||++++.+.++|++|++.|..++.+++.|+++++|.++.|+||++||||++||||++++..++...+|.++|+|+++|||
T Consensus 588 ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~ 667 (888)
T PRK09277 588 EIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPLYDWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDS 667 (888)
T ss_pred HHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCccccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999988776667889999999999999
Q ss_pred CCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccc
Q 005323 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVF 560 (702)
Q Consensus 481 itTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~ 560 (702)
||||||||||+|+++||||+||+++|+.++||||||+||||||+|+||+|+|+|++|+|.+|.++++|+|+|+|+.++||
T Consensus 668 iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~ 747 (888)
T PRK09277 668 ITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIY 747 (888)
T ss_pred CcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccccchhhhheeccccchhhhcccCCccceEEECCCCcEeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCe
Q 005323 561 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 640 (702)
Q Consensus 561 ~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~e 640 (702)
|+|++|+++|+|+|||||+|||||||||||+|++++|||+||||+||+|||++||+|+|||||+|+++++|++|+++++|
T Consensus 748 daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi~avia~sf~rI~~~Nli~~Gilpl~~~~~~~~~~lgl~g~e 827 (888)
T PRK09277 748 DAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTE 827 (888)
T ss_pred HHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhHhhcCcceeecCCcccHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccCCCCceEEE--EcCCC--eEEEEEEecCCHHHHHHHHhcCHHHHHHHHhhh
Q 005323 641 RYTIDLPSSVSEIRPGQDVRV--VTDSG--KSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 699 (702)
Q Consensus 641 ~~~idl~~~~~~~~~g~~~~v--~~~~g--~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 699 (702)
.++|+-. .+++||+++++ +..+| ++|.+.+++||+.|++|+++||+|||+++++++
T Consensus 828 ~~~i~~l---~~l~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~Ei~y~~~GGiL~yv~r~~~~ 887 (888)
T PRK09277 828 TFDIEGL---EDLKPGATVTVVITRADGEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRDLLA 887 (888)
T ss_pred eEEEcCc---ccCCCCCEEEEEEEeCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHhh
Confidence 9998532 24889988887 44566 467888899999999999999999999999875
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=2.2e-199 Score=1696.41 Aligned_cols=662 Identities=47% Similarity=0.820 Sum_probs=624.7
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
++|||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++
T Consensus 189 ~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~~gVtakDliL~i~~~Lr~~Gvv 268 (858)
T TIGR02333 189 VAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQPGITATDIVLALTEFLRKERVV 268 (858)
T ss_pred cccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecCCCCCHhHHHHHHHHHHhhcCcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||+|||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++++++|+|.|++++|.+ +|++|.
T Consensus 269 gk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~k~~~l~~d---~d~~a~ 345 (858)
T TIGR02333 269 SAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKLVETYAKAAGLWAD---SLKHAV 345 (858)
T ss_pred ceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHHHHHHHHHHHhhcC---cCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 688999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|||+||+|++|||++|++|++... .... ..+ ...| .+.||+|++|||
T Consensus 346 Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~------------~~~~--~~~-----~~~g---~l~~g~V~ia~I 403 (858)
T TIGR02333 346 YERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARG------------IAGP--AEE-----QPEG---LMPDGAVIIAAI 403 (858)
T ss_pred eEEEEEEEcccceecccCCCChhhcCCHHHhhhcc------------cccc--ccc-----cccC---cccCCceeEEEE
Confidence 99999999999999999999999999999987421 1000 000 0122 588999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++||.|++||||+|+||+|++.
T Consensus 404 gSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~~G~l~ 483 (858)
T TIGR02333 404 TSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELEQLGFGIVAFACTTCNGMSGALD 483 (858)
T ss_pred ECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhccCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCChH
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSE 400 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ 400 (702)
+++++.|.+++++.+||||+||||+||||+..+++|||||++||||||+|+|++|+++|||+.|+||++|||+||||+.+
T Consensus 484 ~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ 563 (858)
T TIGR02333 484 PVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLGVDADGKPIRLKDIWPSDE 563 (858)
T ss_pred cchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCcCccccCCCCCeEeecCCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCCC
Q 005323 401 EVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480 (702)
Q Consensus 401 ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gdn 480 (702)
||++++.+.++|++|++.|++++++++ ++++.+++|+||++||||++||||++++ +.+.+|++||+|+++||+
T Consensus 564 Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~~---~~~~~i~~arvL~~lgds 636 (858)
T TIGR02333 564 EIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGAL---AGERTLKGMRPLAILGDN 636 (858)
T ss_pred HHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCCC---CcccCccCcEeeeecCCC
Confidence 999999999999999999999998877 5667789999999999999999999873 445789999999999999
Q ss_pred CCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcC--C--CCCCceeccCCCcc
Q 005323 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--G--EVGPKTIHIPTGEK 556 (702)
Q Consensus 481 itTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~--g--~~~~~t~~~p~g~~ 556 (702)
||||||||||+|+++||||+||+++||.+++||+||+||||||+|+|++|+|+|++|+|++ | .+|++|+|+|+|+.
T Consensus 637 iTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~l~~~~g~~~~g~~t~~~p~g~~ 716 (858)
T TIGR02333 637 ITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVKNDGSVKQGSLARIEPEGKV 716 (858)
T ss_pred ccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhhhccccCccccCceeEecCCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999997 4 47899999999999
Q ss_pred cccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccC
Q 005323 557 LSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGL 636 (702)
Q Consensus 557 ~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~ 636 (702)
++|||+|++|+++|+|+|||||+|||||||||||+|+++++||++|||+||+|||++||+|||||||+|.++++|++|++
T Consensus 717 ~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~Nl~~~G~lpl~f~~~~~~~~l~l 796 (858)
T TIGR02333 717 TRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLVGMGVLPLEFKPGTNRHTLGL 796 (858)
T ss_pred eeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhhhhhcCcceEEeCCCCChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEecCCCcccCCCCceEEEE--cCCCe--EEEEEEecCCHHHHHHHHhcCHHHHHHHHhhh
Q 005323 637 TGHERYTIDLPSSVSEIRPGQDVRVV--TDSGK--SFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 699 (702)
Q Consensus 637 ~~~e~~~idl~~~~~~~~~g~~~~v~--~~~g~--~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 699 (702)
+++|.++|. . +++||+++++. ..+|+ +|.+.+++||+.|++|+++||+|||+++++++
T Consensus 797 ~g~e~~~i~-~----~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL~~v~~~~~~ 858 (858)
T TIGR02333 797 DGTETFDVV-G----EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVLQRFAQDFLE 858 (858)
T ss_pred CCCeeEEec-c----CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 999998883 2 47899988764 36785 57777888999999999999999999999863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=3.2e-197 Score=1658.89 Aligned_cols=668 Identities=60% Similarity=1.030 Sum_probs=634.7
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
++|||++|||||||||+||||+|||||||+|++++|+|||+||++|+||||+|+|+|++|||||||||+|+++||++|++
T Consensus 190 ~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGVkLtGkl~~gvTatDlvL~vt~~Lr~~gvV 269 (861)
T COG1048 190 VAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVV 269 (861)
T ss_pred ccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEEEEeccCCCCCCHHHHHHHHHHHHHhcCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
|||||||||||++||+++|+|||||++||||||||||+|++|++||+.|||.+++++++|+|.++|+||.+. +|++|+
T Consensus 270 gkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR~~~~i~lve~y~~~~~l~~~~--~~~~a~ 347 (861)
T COG1048 270 GKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKAQGLWYDP--ADKDAE 347 (861)
T ss_pred ceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCCchHHHHHHHHHHHHhcccCCc--cccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999873 688999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|+|+||+|++||+++++++++++|.+.+.+.... ..+...++ .+.||+|+||+|
T Consensus 348 Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~--~~~~g~V~iaaI 412 (861)
T COG1048 348 YDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIK-------------RVYSLLGK--ELGDGKVVIAAI 412 (861)
T ss_pred cceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcc-------------cccccccc--cCCCCcEEEEEE
Confidence 999999999999999999999999999999999888755432110 01333444 788999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
||||||||||+|+||++|+|+|+++|++++||||++|+|||++|.+||+++||+++|+++||.++++||+|||||+++|+
T Consensus 413 tSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~Gl~~~L~~lGf~iv~~gCttCIGnsg~L~ 492 (861)
T COG1048 413 TSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGLLPYLEKLGFNIVGYGCTTCIGNSGPLP 492 (861)
T ss_pred eeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcCCHHHHHhcCCEEeccccccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCChH
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSE 400 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ 400 (702)
++++..|.++++++++|+|+||||+||+||..+++|||||++|+||||+|+|++|+++||++.+.+|++|||+||||+.+
T Consensus 493 ~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~i~~d~~~~~lg~~~~g~~v~l~diwP~~~ 572 (861)
T COG1048 493 EEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGTINFDLTTDPLGTDNDGKPVYLKDIWPSTE 572 (861)
T ss_pred hhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcccccCcccCccccCCCCCceeeeccCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCCC
Q 005323 401 EVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480 (702)
Q Consensus 401 ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gdn 480 (702)
||.+.+.+.+.+++|++.|.++++ |+.++.|.+++|.|++.||||++||||+.+...+.. |+++|+|+++|||
T Consensus 573 ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~pP~f~~~~~~~~~---~~~~r~L~~~gD~ 645 (861)
T COG1048 573 EIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRLPPFFDGMGAEPKP---IKGARVLAKLGDS 645 (861)
T ss_pred HHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccCCCccccccccccc---cccceeeeeecCc
Confidence 999999999999999999999998 999999999999999999999999999987655433 8999999999999
Q ss_pred CCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccc
Q 005323 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVF 560 (702)
Q Consensus 481 itTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~ 560 (702)
||||||||||+|+++||||+||..+|+.+.|||+||+||+|||+|+|++|+|+|.+|++.++ +|++|+|+|+|+ ||
T Consensus 646 iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfaNir~~n~~~~~-~gg~t~~~p~g~---iy 721 (861)
T COG1048 646 ITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPG-EGGYTIHQPSGE---IY 721 (861)
T ss_pred cccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhcccccccccccc-cCcceeecCCch---hH
Confidence 99999999999999999999999999999999999999999999999999999999999998 899999999999 99
Q ss_pred cHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCe
Q 005323 561 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 640 (702)
Q Consensus 561 ~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~e 640 (702)
|+|++|++++.|+|||||+|||+||||||||+++++|||+||||+||+||||+||||||||||+|++++++++|++++.+
T Consensus 722 daa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIHrSNLi~mGvLPLqf~~~~~~~~l~l~g~e 801 (861)
T COG1048 722 DAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIHRSNLIGMGVLPLQFPNGETYDKLGLDGEE 801 (861)
T ss_pred HHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHHHhhcccceeeeeeccCCCChhhcCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eEEEecCCCcccCCCCceEEEE--cCCCe--EEEEEEecCCHHHHHHHHhcCHHHHHHHHhhh
Q 005323 641 RYTIDLPSSVSEIRPGQDVRVV--TDSGK--SFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 699 (702)
Q Consensus 641 ~~~idl~~~~~~~~~g~~~~v~--~~~g~--~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 699 (702)
.+.|++.+ .++|+.+++|+ ..||. ++...++++|+.|++|+++||+|+|+++++++
T Consensus 802 ~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~GGiL~~v~~~~~~ 861 (861)
T COG1048 802 TIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGILNYVKRDLLK 861 (861)
T ss_pred eEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcCchHHHHHHHhhC
Confidence 88887643 57788877654 45664 56777888999999999999999999998763
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=5.6e-155 Score=1332.15 Aligned_cols=587 Identities=29% Similarity=0.475 Sum_probs=498.1
Q ss_pred CCCCC-eEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~pd-tvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
+++|+ ++|||||||||+||||+||||||++|++++|+|++|||++||+|+|+|+|+|++|||||||||+|+++|+++|+
T Consensus 144 ~a~PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~ 223 (745)
T TIGR01340 144 YAFPGLMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGG 223 (745)
T ss_pred ccCCCCeEEccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCc
Confidence 46895 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHH-HHHHHHHHhhhcccCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVS-MIESYLRANKMFVDYSEPQSE 158 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~-~~e~y~~~~~l~~~~~~~d~~ 158 (702)
+||+|||+|+|+++||+++|||||||++|+|||+||||+|++|++||+.+||++...+ .++.| .|..+ .+|++
T Consensus 224 ~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~-----~~~~~-~~D~~ 297 (745)
T TIGR01340 224 TGYIVEYFGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQY-----SFFKL-KADEG 297 (745)
T ss_pred cceEEEEeCcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHH-----hcccc-cCCCC
Confidence 9999999999999999999999999999999999999999999999999999875422 22222 34333 48999
Q ss_pred CcccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEE
Q 005323 159 RVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIA 238 (702)
Q Consensus 159 a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia 238 (702)
|.|+++++||||+|||+||+|++|||++||+|+..++.+ .|++. .|.+|
T Consensus 298 a~Y~~~i~iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~~-----~Id~a 346 (745)
T TIGR01340 298 AQYDELIEIDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWPE-----KLSAG 346 (745)
T ss_pred CCeEEEEEEEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCCc-----eecEE
Confidence 999999999999999999999999999999999865421 11111 24579
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCC
Q 005323 239 AITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD 318 (702)
Q Consensus 239 ~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~ 318 (702)
|||||||||++||+.||.+| |+|+ |++++|+|+++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.
T Consensus 347 ~IGSCTNgr~~Dl~~AA~il-k~a~--~~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~ 423 (745)
T TIGR01340 347 LIGSCTNSSYEDMSRCASIV-KDAE--QAGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDR 423 (745)
T ss_pred EEEcCCCCCHHHHHHHHHHh-hhhh--hCCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCC
Confidence 99999999999977777665 6665 46678889999999999999999999999999999999999999999999865
Q ss_pred CchHHHhhhccCceEEEEeeecCCCCCCCC-CCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCC
Q 005323 319 IDDAVAAAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWP 397 (702)
Q Consensus 319 l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP 397 (702)
+. .+.+|+.+ +||||+||||+||| |...+++|||||++||||||+|+|++|+++||+ .+++|++|||+ ||
T Consensus 424 ~~-----~~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p 494 (745)
T TIGR01340 424 KD-----DVKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--AP 494 (745)
T ss_pred cC-----ccCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CC
Confidence 43 24567754 57999999999999 556688999999999999999999999999999 69999999998 89
Q ss_pred ChHHHHHHhhhccCchhhHHhhhhccCCCcccccccCC--CCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEe
Q 005323 398 SSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVP--SGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLL 475 (702)
Q Consensus 398 ~~~ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~--~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~ 475 (702)
+.+|+++. +| ..++..|+.++.+ ++..|+|+++|+||++||+|++. +..+|+++|+|+
T Consensus 495 ~~~e~~~~--------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~-----~~~~i~~a~vLl 554 (745)
T TIGR01340 495 KGDELPEK--------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPW-----NGKDLSGLRVLI 554 (745)
T ss_pred Cccccchh--------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCC-----CcCCccCCeEEE
Confidence 99998765 12 2346667765443 56789999999999999999653 346799999999
Q ss_pred ecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCC--ceeccCC
Q 005323 476 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP--KTIHIPT 553 (702)
Q Consensus 476 ~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~--~t~~~p~ 553 (702)
++||||||||||||| .||++| ||.+.+.+++|.. ..|. +++ .+.+.|+
T Consensus 555 k~gd~iTTDHIsPAG---------~~L~~r--------------g~~~~i~~n~~~~--~~n~-----~~~~~~~~~~~~ 604 (745)
T TIGR01340 555 KVTGKCTTDHISAAG---------PWLKYK--------------GHLDNISNNTLIG--AVNA-----ETGEVNKAYDLD 604 (745)
T ss_pred EECCCcChhcccccc---------hhHhhc--------------CChhhhhcceecc--cccc-----cCCceeEEEcCC
Confidence 999999999999998 599984 4555444444432 1221 122 4667789
Q ss_pred CcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhh
Q 005323 554 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 633 (702)
Q Consensus 554 g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 633 (702)
|+.++++++|++|++.++++|||||+||||||||||||+++++|||+||||+||+||||+||||+|||||+|.++++++.
T Consensus 605 g~~~~~~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~Gilpl~~~~~~~~~~ 684 (745)
T TIGR01340 605 GSKGTIPELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDK 684 (745)
T ss_pred CCccchHHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcCceeEEecCCccHhh
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999988888988
Q ss_pred ccCCCCeeEEE-ecCCCcccCCC---CceEE--EEcCCCe--EEEEEEecCCHHHHHHHHhcCHHHHH
Q 005323 634 HGLTGHERYTI-DLPSSVSEIRP---GQDVR--VVTDSGK--SFTCVIRFDTEVELAYFDHGGILQYV 693 (702)
Q Consensus 634 l~~~~~e~~~i-dl~~~~~~~~~---g~~~~--v~~~~g~--~~~~~~~~~t~~e~~~~~aGGll~~v 693 (702)
+. .++++.+ +++ ++.+ ++.++ ++..+|+ +|.+.+++ |+.|++|+++||+|||+
T Consensus 685 i~--~gd~~~~~~l~----~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l-t~~E~~~~~aGGiLny~ 745 (745)
T TIGR01340 685 IQ--PGDEVATLNLY----EMLKNGGGGEVDLRVTKKNGKVFEIKLKHTV-SKDQIGFFKAGSALNLM 745 (745)
T ss_pred cC--CCCEEEEcChh----hccccCCCCeEEEEEEeCCCcEEEEEEEeeC-CHHHHHHHHcCCcccCC
Confidence 76 3344444 343 2333 55666 4445564 56666666 99999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=1.9e-145 Score=1246.79 Aligned_cols=534 Identities=35% Similarity=0.562 Sum_probs=464.0
Q ss_pred CCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 2 LYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 2 ~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
+.| +++|||||||||+||||+||||||++|++++|+|+++||++||||+|+|+|+|++||++|||||+|+++|+++|++
T Consensus 109 a~PG~~ivGtDSHT~~~GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~ 188 (646)
T PRK07229 109 AFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGV 188 (646)
T ss_pred cCCCCEEEeCCCCcCcCCcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCcc
Confidence 568 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||.+++. .+ .+|++|.
T Consensus 189 g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~--------------~l-~~D~~a~ 253 (646)
T PRK07229 189 GKIIEYFGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWV--------------EL-LADPDAE 253 (646)
T ss_pred ceEEEEECcccccccHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCcccce--------------ec-cCCCCCC
Confidence 99999999999999999999999999999999999999999999999999866432 12 4899999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|||+||+|++|||++||+|+. +.+ |.+|||
T Consensus 254 Y~~~i~iDLs~leP~va~P~~Pd~~~pv~e~~--------------~~~-------------------------I~~a~I 294 (646)
T PRK07229 254 YDEVIEIDLSELEPLIAGPHSPDNVVPVSEVA--------------GIK-------------------------VDQVLI 294 (646)
T ss_pred eeEEEEEEccceeeeeecCCCccceeEhHHhC--------------CCe-------------------------EEEEEE
Confidence 99999999999999999999999999999987 333 356999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
|||||+|++||++||++| +|+||+|+||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.+
T Consensus 295 GSCTN~~~~Dl~~aA~iL------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~~- 367 (646)
T PRK07229 295 GSCTNSSYEDLMRAASIL------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQAP- 367 (646)
T ss_pred ecCCCCChHHHHHHHHHh------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCC-
Confidence 999999999999999999 7999999999999999999999999999999999999999999999999985432
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCChH
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSE 400 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ 400 (702)
.++++ +|||+||||+||||++.+.+|||||++||||||+|+|+ |+.++|++. |+++||+ ||+.
T Consensus 368 -------~~~~~---~vst~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~- 430 (646)
T PRK07229 368 -------ATGNV---SLRTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEG- 430 (646)
T ss_pred -------CCCcE---EEEccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCcc-
Confidence 24565 79999999999999999999999999999999999999 899998876 8899996 7871
Q ss_pred HHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCCC
Q 005323 401 EVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480 (702)
Q Consensus 401 ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gdn 480 (702)
+.+++++|.. .+. +.+++++.++||++.++...+. .++.++++|+++|||
T Consensus 431 -------~~~~~~~~~~-------~~~---------------~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~vl~~~gd~ 480 (646)
T PRK07229 431 -------FAVDDAGIIA-------PAE---------------DGSDVEVVRGPNIKPLPLLEPL-PDLLEGKVLLKVGDN 480 (646)
T ss_pred -------ccCChhhhcC-------CCc---------------ccccccccCCCCCCCCccCCCC-CcCceEEEEEEcCCC
Confidence 2233444421 111 2245666666777766655443 357799999999999
Q ss_pred CCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccc
Q 005323 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVF 560 (702)
Q Consensus 481 itTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~ 560 (702)
||||||||+|+ +||++ |+|+|.|++++|.+.+ |.|
T Consensus 481 i~TD~I~Pa~~--------~~l~~--------------r~~~~~l~~~~f~~~~--~~f--------------------- 515 (646)
T PRK07229 481 ITTDHIMPAGA--------KWLPY--------------RSNIPNISEFVFEGVD--NTF--------------------- 515 (646)
T ss_pred CChhccCcCCc--------chhcc--------------CCCHHHHHHHHhccCC--hhh---------------------
Confidence 99999999964 47764 7899999999998643 211
Q ss_pred cHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCe
Q 005323 561 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 640 (702)
Q Consensus 561 ~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~e 640 (702)
+.+++..+ ++|||||+|||||||||||||+++++||+||||+||+||||+||+|+|||||+|.++++++.+. .++
T Consensus 516 --~~~~~~~~-~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~~~~~~~l~--~gd 590 (646)
T PRK07229 516 --PERAKEQG-GGIVVGGENYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKIE--EGD 590 (646)
T ss_pred --hHHHHhcC-CcEEEecCccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecChHhHhhcC--CCC
Confidence 13455433 7899999999999999999999999999999999999999999999999999998777888764 567
Q ss_pred eEEE-ecCCCcccCCCCceEEEEc-CCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhh
Q 005323 641 RYTI-DLPSSVSEIRPGQDVRVVT-DSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 698 (702)
Q Consensus 641 ~~~i-dl~~~~~~~~~g~~~~v~~-~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 698 (702)
.++| |+. ++.++.++++.. .+|++++++.++ ++.|++|+++||+|||+++++.
T Consensus 591 ~i~i~dl~----~~~~~~~v~v~~~~~~~~~~~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 591 VLEIEDLR----EFLPGGPLTVVNVTKDEEIEVRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred EEEEccch----hcCCCCeEEEEEecCCEEEEEEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 8888 664 345555555543 356888887777 8999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=1.1e-144 Score=1238.44 Aligned_cols=540 Identities=33% Similarity=0.531 Sum_probs=460.3
Q ss_pred CCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 2 LYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 2 ~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
..| +++|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++
T Consensus 106 a~PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~ 185 (658)
T TIGR01342 106 AAPGKTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGL 185 (658)
T ss_pred cCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcc
Confidence 568 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.++|.+++ ..+ .+|++|.
T Consensus 186 g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~--------------~~l-~~D~~a~ 250 (658)
T TIGR01342 186 GKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSDDITEAWLAAFDREDDF--------------VDL-LADADAE 250 (658)
T ss_pred eEEEEEecCCcCccCHHHHhhhhccchhhCceEEEEcCcHHHHHHHHhcCCchhe--------------eec-cCCCCCc
Confidence 9999999999999999999999999999999999999999999999999986543 222 4899999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|||+||+|++|||++||+|+. |++| ..+||
T Consensus 251 Y~~~i~iDls~leP~va~P~~Pd~v~~v~e~~--------------g~~i-------------------------d~v~I 291 (658)
T TIGR01342 251 YADEIEIDLSDLEPLIAEPHMPDNVVPVREIA--------------GIEV-------------------------DQVMI 291 (658)
T ss_pred EEEEEEEEccceeeeeeCCCCCCCeeEhHHhC--------------Ccee-------------------------eeEEE
Confidence 99999999999999999999999999999987 5554 23899
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
|||||||++||++||++| +|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++.+.
T Consensus 292 GSCTn~~~~Dl~~aA~il------~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~~ 365 (658)
T TIGR01342 292 GSCTNGAFEDLLPAAKLL------EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAPA 365 (658)
T ss_pred eCCCCCChHHHHHHHHHh------CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCCC
Confidence 999999999999999999 89999999999999999999999999999999999999999999999999965532
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccC-CCCcccccccC-CCC
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVG-KDGKKIFLRDI-WPS 398 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~-~~g~~v~l~di-wP~ 398 (702)
++++ ||||+||||+||||+..+.+|||||++||||||+|+| +||..+. .+| |+ ||+
T Consensus 366 --------~~~~---~vst~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-----~dp~~l~~~~g------~~~~p~ 423 (658)
T TIGR01342 366 --------SDGV---SLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGEI-----IDPRDLADDEG------DLEAIG 423 (658)
T ss_pred --------CCcE---EEEccCCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-----CCHHHhccccC------cccCCC
Confidence 4554 7999999999999999899999999999999999999 3554332 233 34 886
Q ss_pred hHHHHHHhhhccCchhhHHhhhhccCCCcccccccC---CCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEe
Q 005323 399 SEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSV---PSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLL 475 (702)
Q Consensus 399 ~~ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~---~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~ 475 (702)
.++ |+.|...|...+ |+.+|. +....+ .++||+++|+|+++ +++|++ |++.
T Consensus 424 ~~~----------p~~~~~~~~~~~-----~~~~~~~~~~~~~~~----~~p~i~~~p~~~~~------~~~i~g-rv~~ 477 (658)
T TIGR01342 424 FEM----------GEKFPGGYDAAD-----IDIIPKEEREDDDII----KGPNIKPLPEFDPL------GADIEG-ETAL 477 (658)
T ss_pred CCC----------chhhcccccccc-----cccCCCCCCCCccee----eCCCCCCCCCCCCC------ccccCc-eEEE
Confidence 542 455655554443 766543 211122 25566666666554 466766 9999
Q ss_pred ecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCc
Q 005323 476 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 555 (702)
Q Consensus 476 ~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~ 555 (702)
++|||||||||||+|. .||.+ |+|.+.+++++|...+ |.
T Consensus 478 ~~gDnI~TD~I~Pa~~--------~~l~~--------------r~~~~~l~~~~~~~~~-----------p~-------- 516 (658)
T TIGR01342 478 IMEDNITTDHIIPAGA--------DILKF--------------RSNIEAISEFTLHRID-----------DE-------- 516 (658)
T ss_pred EcCCCCChhcCCCCCc--------ccccc--------------CCCHHHHhhheeeCCC-----------ch--------
Confidence 9999999999999964 25533 7899999999997532 11
Q ss_pred ccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhcc
Q 005323 556 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 635 (702)
Q Consensus 556 ~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~ 635 (702)
..+++++|++.+.++|||||+|||||||||||||+|++|||+||||+||+|||++||+|+|||||+|+++++++++.
T Consensus 517 ---f~~~~~~~~~~~~~~iiVaG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~d~~~~~~i~ 593 (658)
T TIGR01342 517 ---FAERAKAADEKGKAGIIIAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFE 593 (658)
T ss_pred ---HHHHhhcccccCCceEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEEecChhhHHHhC
Confidence 12567888888889999999999999999999999999999999999999999999999999999999888888875
Q ss_pred CCCCeeEEEe--cCCCcccCCCCceEEEE-cCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhhh
Q 005323 636 LTGHERYTID--LPSSVSEIRPGQDVRVV-TDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 699 (702)
Q Consensus 636 ~~~~e~~~id--l~~~~~~~~~g~~~~v~-~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 699 (702)
. +++++|+ +.+ .+.+|+..++. ..+|.++.+...+ ++.|++|+++||+|||++++..+
T Consensus 594 ~--Gd~l~id~~l~~---~~~~g~~~~i~~~~~g~~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~~ 654 (658)
T TIGR01342 594 L--GDDIEIPDDLAA---ALADGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNKHRE 654 (658)
T ss_pred C--CCEEEECchhhh---hcCCCCceEEEEecCCeEEEEeCCC-CHHHHHHHHcCCHHHHHHHhhcc
Confidence 4 6677887 643 46788644443 3466665555433 89999999999999999997653
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=3.5e-133 Score=1142.20 Aligned_cols=563 Identities=23% Similarity=0.344 Sum_probs=435.8
Q ss_pred CCCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
+++| +++|||||||||+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+++|+
T Consensus 112 ~a~PG~~ivGsDSHT~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~ 191 (712)
T TIGR00139 112 FAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDV 191 (712)
T ss_pred cccCCeEEEccCcCcCccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCc
Confidence 4689 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEec--CccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChh--------HHHHHHHHHH---Hh
Q 005323 80 VGMFVEFYG--EGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDD--------TVSMIESYLR---AN 146 (702)
Q Consensus 80 ~g~~vEf~G--~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~--------~~~~~e~y~~---~~ 146 (702)
+|++|||+| +||++||+++|||||||++|+|||+|+||+|++|++||+.++|... +.+..++|.+ +.
T Consensus 192 ~g~~iEf~G~~~gv~~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 271 (712)
T TIGR00139 192 LNHAIEFTGSEDSLNALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEE 271 (712)
T ss_pred ceEEEEEecCcchhhcCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999876311 0111222221 11
Q ss_pred hhcccCCCCCCCCcccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCC
Q 005323 147 KMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 226 (702)
Q Consensus 147 ~l~~~~~~~d~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~ 226 (702)
..|.. +.+|++|.|+++++||||+|+|+||+|++|+|++||+++... +++|
T Consensus 272 ~~~~~-l~aD~~A~Y~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~~~I---------------- 322 (712)
T TIGR00139 272 KAEIP-LKADKDAHYAKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------DIKI---------------- 322 (712)
T ss_pred Hhhcc-CCCCCCCCEEEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------Ccee----------------
Confidence 12333 358999999999999999999999999999999999998411 3333
Q ss_pred cccccCCCEEEEEeecCCCCCChHHHHHHHHHHHHHHhcC---CccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcE
Q 005323 227 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELG---LEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFH 303 (702)
Q Consensus 227 ~~~~~~g~v~ia~IgSCTN~~~~dl~~aA~lla~~A~~~G---~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~ 303 (702)
.+||||||||+|++||+.||.+|+++|+++| +||+|+||++|+|||++|+++|+++|++++|.+|||.
T Consensus 323 ---------d~~~IGSCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~ 393 (712)
T TIGR00139 323 ---------DKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAI 393 (712)
T ss_pred ---------eeEEEecCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCE
Confidence 3499999999999999999999988888763 8999999999999999999999999999999999999
Q ss_pred EeccCCccccCCCCCCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCccc
Q 005323 304 IVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGV 383 (702)
Q Consensus 304 i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~ 383 (702)
|.+||||+|+|+++++. .++++ ||||+||||+||||++.+.+|||||++||||||+|+|+ ||..+
T Consensus 394 i~~~gCg~CiG~~~~~~-------~~gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~ 458 (712)
T TIGR00139 394 PLPAGCGPCIGLGAGLL-------EPGEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEV 458 (712)
T ss_pred EcCCccccccCcCCCCC-------CCCCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHH
Confidence 99999999999998764 35666 79999999999999999999999999999999999994 66533
Q ss_pred CCCCcccccccCCCCh--H---HHHHHhhhccCchhhHHhhhhccCCCcccccccCCCC-CccccCCCcccccCCCCCCC
Q 005323 384 GKDGKKIFLRDIWPSS--E---EVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSG-TLYAWDPKSTYIHEPPYFKD 457 (702)
Q Consensus 384 ~~~g~~v~l~diwP~~--~---ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~-~~~~w~~~s~~i~~pp~~~~ 457 (702)
.. + +=||.. . .+.......++++++...-..+ +. + ++.++. ... -.+++..+.+.|
T Consensus 459 ~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----~~~~~~~~~~-~~~~~~~~~~~~---- 520 (712)
T TIGR00139 459 LS---P----EGWTEIIFGEGDGIKEEDRMLTNEEALEKIIGII-DD-L----VADEEKNAAS-EAPAQEESEQGL---- 520 (712)
T ss_pred hc---c----cccccccccccccccCcccccCcHHHHhhhhhhc-cC-c----cccchhcccc-cccccchhccCC----
Confidence 21 0 002210 0 0111111223334442211000 00 0 000000 000 011222343443
Q ss_pred CCCCCCCCCCccceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhh
Q 005323 458 MTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVN 537 (702)
Q Consensus 458 ~~~~~~~~~~i~~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n 537 (702)
++..++.++.| ..+++++.|||||||||+|+ +||....+ ..+.|++++|.+.+
T Consensus 521 ~~~~~~~~~~i-~g~v~~~~gdnI~TD~I~P~----------~~~~~~~~-------------~~~~l~~~~~~~~d--- 573 (712)
T TIGR00139 521 TEILEGFPEEF-SGELVFCDADNINTDGIYPG----------KYTYQDDV-------------PKEKMAQVCMENYD--- 573 (712)
T ss_pred CCcCCCCCceE-EEEEEEcCCCCCchhhccch----------hhcccCCC-------------CHHHHHHhhccCCC---
Confidence 23334445556 77899999999999999999 78742111 23578889998643
Q ss_pred hhcCCCCCCceeccCCCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhcc
Q 005323 538 KLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVG 617 (702)
Q Consensus 538 ~~~~g~~~~~t~~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin 617 (702)
| +.+.+++. .+|||||+|||||||||||+|||+++||+||||+||+|||||||+|
T Consensus 574 --------p--------------~f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA~SFarIf~rN~iN 628 (712)
T TIGR00139 574 --------A--------------EFRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGNIFSRNSIN 628 (712)
T ss_pred --------c--------------chhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEEEEchHHHHHHhHHHh
Confidence 2 12234544 5899999999999999999999999999999999999999999999
Q ss_pred CcccceecCCccchhhcc---------C--CCCeeEEEecCCCcccCCCCceEEEEcCC----CeEEEEEEecCCHHHHH
Q 005323 618 MGIIPLCFKPGEDAETHG---------L--TGHERYTIDLPSSVSEIRPGQDVRVVTDS----GKSFTCVIRFDTEVELA 682 (702)
Q Consensus 618 ~Gilpl~~~~~~~~~~l~---------~--~~~e~~~idl~~~~~~~~~g~~~~v~~~~----g~~~~~~~~~~t~~e~~ 682 (702)
+|||||+|++ ..+.+. + ..+++++||++. | .+++ ..+ ++++.+.+...++..++
T Consensus 629 ~Gl~~l~~~~--~~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~-------g-~i~~-t~g~~~~~~~~~~~~~~~p~~~~e 697 (712)
T TIGR00139 629 NALLGLEIPA--LIKKLREKFGGADKELTRRTGWFLKWDVAD-------A-KIEV-QEGSLDGGPILEHKVGELGKNLQE 697 (712)
T ss_pred cCCceEEchh--HHHHHHhhhcccccccccCCCCEEEEEccC-------C-EEEE-CCCcccccceeEEEcCCCCHHHHH
Confidence 9999999985 234433 1 256788999865 2 3444 222 22344444333789999
Q ss_pred HHHhcCHHHHHHHHh
Q 005323 683 YFDHGGILQYVIRNL 697 (702)
Q Consensus 683 ~~~aGGll~~v~~~~ 697 (702)
++++|||++|+|+++
T Consensus 698 ii~~GGl~~~~k~~~ 712 (712)
T TIGR00139 698 IIAKGGLEGWVKNAI 712 (712)
T ss_pred HHHcCCHHHHHHhcC
Confidence 999999999999874
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=4.8e-131 Score=1129.63 Aligned_cols=575 Identities=21% Similarity=0.264 Sum_probs=452.5
Q ss_pred CCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc-
Q 005323 2 LYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV- 79 (702)
Q Consensus 2 ~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~- 79 (702)
..| +++|||||||+ +||||+|||||||+|++.+|+|++||+++||+|+|+|+|+|++||+||||||+|+++|+++|+
T Consensus 139 a~PG~~ivGtDSHT~-~GalG~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v 217 (751)
T PRK11413 139 AGGGKMILGSDSHTR-YGALGTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYV 217 (751)
T ss_pred cCCCcEEEeeCcCcc-cchhhhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcc
Confidence 568 79999999996 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 159 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a 159 (702)
+||+|||+||||++||+++|||||||++|+|||+||||+|++|++||+.++|.+.+ +.+ .+|++|
T Consensus 218 ~~k~vEF~G~gv~~LS~~~R~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~--------------~~l-~~D~~A 282 (751)
T PRK11413 218 KNKVMEFVGPGVSALSTDFRNGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDY--------------CEL-NPQPMA 282 (751)
T ss_pred cceEEEEECCccccCCHhHHhhhhhcccccCceEEEecCcHHHHHHHHhCCChhhc--------------eec-cCCCCC
Confidence 69999999999999999999999999999999999999999999999999986542 322 489999
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCC--cccccCC--CE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT--PAQLRHG--DV 235 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~--~~~~~~g--~v 235 (702)
.|+++++||||+|||+||+|++|||++||+|+.+++.++++... .++..+ ..++++. ..++.++ .|
T Consensus 283 ~Yd~~ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~ki~~~~~~I 352 (751)
T PRK11413 283 YYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREVE-IESERV---------AHGKAKLSLLDKIENGRLKV 352 (751)
T ss_pred CeeEEEEEEcccceeeecCCCChhhCcChhhcccchhhhcchhh-hhhhhh---------hhhhccccccccccCCCcEe
Confidence 99999999999999999999999999999999988887766421 111110 1111111 0112212 35
Q ss_pred EEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC-CceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccC
Q 005323 236 VIAAITSCTNTSNPSVMLGAALVAKKACELGLEVK-PWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG 314 (702)
Q Consensus 236 ~ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~-~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG 314 (702)
.+||||||||||++||+.||++| +|++|+ ++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|
T Consensus 353 dq~~IGSCTNg~~eDl~~AA~IL------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG 426 (751)
T PRK11413 353 QQGIIAGCSGGNYENVIAAANAL------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFG 426 (751)
T ss_pred eeEEEecCCCCCHHHHHHHHHHh------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhC
Confidence 56999999999999999999999 899998 56999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCC-----ccccCHHHHHHHHhc-ccccccccCCCcccCCCCc
Q 005323 315 NSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GSVNIDFETEPVGVGKDGK 388 (702)
Q Consensus 315 ~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~-----~yLaSP~~vaA~Ala-G~I~~d~~~~pl~~~~~g~ 388 (702)
+++.+ .++++ ||+|+||||+||||++.++ +||+||+++||+|+. |+|+ +|...+.
T Consensus 427 ~~~~~--------~~ge~---~isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~--- 487 (751)
T PRK11413 427 AGDTP--------ANNGL---SIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC--- 487 (751)
T ss_pred cCCcC--------CCCCE---EEeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc---
Confidence 86543 35665 7999999999999999887 778889999999998 6994 7754431
Q ss_pred ccccccCCCChHHHHHHhhhccCchhhH-HhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCC
Q 005323 389 KIFLRDIWPSSEEVAHVVQKSVLPDMFK-ATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHG 467 (702)
Q Consensus 389 ~v~l~diwP~~~ei~~~~~~~~~~~~~~-~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~ 467 (702)
++ +.+ .+.++..+|. ..|.. |.. +..++.+.+.|+|+++|.+.+.+.+
T Consensus 488 -------~~---~~p---~~~~~~~~y~~~~~~~-------------~~~-----~~~~~~~~~gPni~~~p~~~~l~~~ 536 (751)
T PRK11413 488 -------WD---NVP---EYAFDVTPYKNRVYQG-------------FGK-----GATQQPLIYGPNIKDWPEMGALTDN 536 (751)
T ss_pred -------cc---cCC---CcccCccccccccccC-------------CCC-----CCCcceEEeCcCCCCCCCCCCCCCc
Confidence 11 111 1345555553 22211 111 2456788899999999999988888
Q ss_pred ccceeEEeecCCCCC-cCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCC
Q 005323 468 VKGAYCLLNFGDSIT-TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 546 (702)
Q Consensus 468 i~~a~~l~~~gdnit-TD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~ 546 (702)
| .++++.|++|||| |||||||| +||++ |||.+.+++++|... .|.|......-
T Consensus 537 ~-~~kv~~k~~D~itTTD~i~paG---------~~l~~--------------Rsn~~~is~~~~~~~--d~~~~~ra~~~ 590 (751)
T PRK11413 537 I-LLKVCSKILDPVTTTDELIPSG---------ETSSY--------------RSNPLGLAEFTLSRR--DPGYVGRSKAV 590 (751)
T ss_pred E-EEEEEEEeCCCCccccccccCC---------Ccccc--------------ccCHHHHhhhhcccc--ChhhHHHHHHH
Confidence 7 7789999999997 99999997 68887 899999999999654 23332100000
Q ss_pred ce--eccCCCcccccccHHHHH--------------HhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhH
Q 005323 547 KT--IHIPTGEKLSVFDAAMRY--------------KNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERI 610 (702)
Q Consensus 547 ~t--~~~p~g~~~~v~~~a~~y--------------~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI 610 (702)
.. .....|. +-+.++.| ++.+.+ +||+|.||||||||||||++|++|||+||||+||+||
T Consensus 591 ~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iv~~~nyG~GSSREhAAla~r~LGi~AVIAkSFARI 666 (751)
T PRK11413 591 AELENQRLAGN---VSELTEVFARIKQIAGQEHIDPLQTEIG-SMVYAVKPGDGSAREQAASCQRVLGGLANIAEEYATK 666 (751)
T ss_pred hhhhhhhhcCC---cHHHHHHHHhhhhccccccccccccCce-EEEEEeCCCCCccHHHHHHHHHHhCceEEEEeeehHH
Confidence 00 0001121 11333344 445555 5556699999999999999999999999999999999
Q ss_pred Hhh-hhccCcccceecCCccchhhccCCCCeeEEEecCCCcccCCCC-ceE--EEEcCCCe--EEEEEEecCCHHHHHHH
Q 005323 611 HRS-NLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPG-QDV--RVVTDSGK--SFTCVIRFDTEVELAYF 684 (702)
Q Consensus 611 f~~-Nlin~Gilpl~~~~~~~~~~l~~~~~e~~~idl~~~~~~~~~g-~~~--~v~~~~g~--~~~~~~~~~t~~e~~~~ 684 (702)
|+| ||||+|||||+|++.. .+..++.++|+... ..+..+ +.+ .+...+|+ .+.+.+.-.+++|++||
T Consensus 667 f~RsNlIN~GilpL~f~~~~-----~i~~GD~l~id~~~--~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~eil 739 (751)
T PRK11413 667 RYRSNVINWGMLPFQMAEEP-----TFEVGDYIYIPGIR--AALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREII 739 (751)
T ss_pred HHhhhhhhcCccceecCchh-----hCCCCCEEEEechh--hhhhcCCCceeEEEEeCCCceeeEEEEeCCCCHHHHHHH
Confidence 555 9999999999998642 34567888888532 123333 223 34444443 34444322389999999
Q ss_pred HhcCHHHHHHH
Q 005323 685 DHGGILQYVIR 695 (702)
Q Consensus 685 ~aGGll~~v~~ 695 (702)
++||+|||+++
T Consensus 740 ~aGGllny~k~ 750 (751)
T PRK11413 740 KAGCLINYNKN 750 (751)
T ss_pred HcCCHHHHhhc
Confidence 99999999986
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=2e-121 Score=998.04 Aligned_cols=592 Identities=31% Similarity=0.474 Sum_probs=488.3
Q ss_pred CCCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
++|| -.+|||||||+++||||+|++||||+|++++|+++||.+++|++++|+|+|+|+.|+++|||||++.+.|..+|+
T Consensus 177 YAfPG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkgg 256 (778)
T KOG0453|consen 177 YAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGG 256 (778)
T ss_pred ccCCcceEEeccCCCCCCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCc
Confidence 5789 568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 159 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a 159 (702)
+|++||||||||.+||++.|+|||||++|.|||+|+||.|+.+++||+.+||.+.. +..++|.++ +..+|++|
T Consensus 257 tg~iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~ia-~~a~~~~~~------~l~AD~~a 329 (778)
T KOG0453|consen 257 TGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEIA-REARETLDA------ILAADKGA 329 (778)
T ss_pred cceeEEEecCccceeccccceeeccccccccccccccCCCHHHHHHHHHhCcccch-hhhHHhhhh------cccCCCCC
Confidence 99999999999999999999999999999999999999999999999999998642 333444443 23589999
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAA 239 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~ 239 (702)
.|+++||||||+|+|+|.||++||-..||+++.+.. +-++|+.+++ +++
T Consensus 330 ~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~--------------------------~kn~wp~~i~-----~gl 378 (778)
T KOG0453|consen 330 HYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENS--------------------------EKNGWPIKIK-----VGL 378 (778)
T ss_pred CcceEEEEEhhhcccccCCCCCccccChHHHHhHHh--------------------------hhcCCceeee-----eeE
Confidence 999999999999999999999999999999988431 1256666654 589
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCC
Q 005323 240 ITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDI 319 (702)
Q Consensus 240 IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l 319 (702)
||||||+||+||-.+|.++ ++|..+|+ +|.|.++|+|||.||+..++|.|+++.|+++|+.+++++||||||++...
T Consensus 379 igSCTNSsyeDm~raa~iv-~~a~~~gl--k~~v~F~VtpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~ 455 (778)
T KOG0453|consen 379 IGSCTNSSYEDMSRAADIV-KQAKGKGL--KPKVPFYVTPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRK 455 (778)
T ss_pred EEeecCccHHHHHHHHHHH-HHHHhcCC--CCCcceEeccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCcccccccc
Confidence 9999999999999888775 88886665 56699999999999999999999999999999999999999999998652
Q ss_pred chHHHhhhccCceEEEEeeecCCCCCCCCCCcc-CCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCC
Q 005323 320 DDAVAAAITENDIVAAAVLSGNRNFEGRVHPLT-RANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPS 398 (702)
Q Consensus 320 ~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~-~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~ 398 (702)
. +++||.-. -|+|.||||.|||+.+. ...||+||++|+|+||+|++.+++++|-+ .+.||+.+.|+. |.
T Consensus 456 d------vk~GE~nt-ivts~NRNFtgRnd~np~t~afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~ 525 (778)
T KOG0453|consen 456 D------IKKGEKNT-IVTSYNRNFTGRNDANPATHAFLTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PI 525 (778)
T ss_pred c------ccCCCcCc-eeeeecccccccCCCCcchhhcccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--Cc
Confidence 2 44566532 38999999999998765 56799999999999999999999999988 568999998875 77
Q ss_pred hHHHHHHhhhccCchhhHHhhhhccCCCcccccccCCC-CCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeec
Q 005323 399 SEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNF 477 (702)
Q Consensus 399 ~~ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~-~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~ 477 (702)
.+|+.+ +.++| |...++..+.+. ...+..|+.|++++.-.-|+ ++..+++++..+|+++
T Consensus 526 g~~lp~---~g~d~------------g~~ty~ap~~~~~~~~v~v~p~s~rlqlLepF~-----~w~gkd~edl~ilikv 585 (778)
T KOG0453|consen 526 GDELPK---KGFDP------------GQDTYQAPPSSSSVVEVDVDPTSDRLQLLEPFD-----KWDGKDLEDLKILIKV 585 (778)
T ss_pred CCCCcc---cccCC------------CcccccCCCCCCCcceeecCCcccchhhcCCCC-----cccccccccceEEEEE
Confidence 777543 22333 222222322221 23577899999986432222 2335678899999999
Q ss_pred CCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCccc
Q 005323 478 GDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKL 557 (702)
Q Consensus 478 gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~ 557 (702)
..+||||||+-|| .||+++|+.+.-+|.+=----|-|.|. .|.+ .++.+|+..
T Consensus 586 ~gkCttDhIsaaG---------pwlkY~Ghl~nisnn~~igain~En~e---------~n~~---------~n~~~ge~~ 638 (778)
T KOG0453|consen 586 KGKCTTDHISAAG---------PWLKYRGHLENISNNDLIGAINKENGE---------ANCV---------KNYLTGEFG 638 (778)
T ss_pred ecccCccccccCC---------cceeccchhhhcccchhhhhcchhhhh---------hhhh---------hhccccccC
Confidence 9999999999998 599999987654443211012222221 1111 123466777
Q ss_pred ccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCC
Q 005323 558 SVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLT 637 (702)
Q Consensus 558 ~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~ 637 (702)
.+.+.+..||+.|++||+|+++|||.||||||||.+|+.+|+++||.+||+|||.+|++|+|+|||+|.++.+|++|.-
T Consensus 639 ~vp~~~~~yk~~g~~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi~~- 717 (778)
T KOG0453|consen 639 TVPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKIRP- 717 (778)
T ss_pred CcCchhhhHHhcCceeEEEcccccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhhcCh-
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred CCeeEEEecCCCcccCCCCceEE--EEcCCCeEEEEEEecC-CHHHHHHHHhcCHHHHHHH
Q 005323 638 GHERYTIDLPSSVSEIRPGQDVR--VVTDSGKSFTCVIRFD-TEVELAYFDHGGILQYVIR 695 (702)
Q Consensus 638 ~~e~~~idl~~~~~~~~~g~~~~--v~~~~g~~~~~~~~~~-t~~e~~~~~aGGll~~v~~ 695 (702)
.. .+++. .+.++.+|.+++ |+..+|++++..+.+. +..|++|+++|..|+++++
T Consensus 718 -~d--~~~~~-~L~~~~~gkp~t~~vt~~dg~~~~~kl~ht~n~~Qi~~fkaGsaln~~~e 774 (778)
T KOG0453|consen 718 -AD--KVSIK-GLTRRTPGKPLTVVVTKKDGKEVEIKLNHTGNKLQIEWFKAGSALNVMKE 774 (778)
T ss_pred -hc--ccchh-hhhhhcCCCceeEEEECCCCcEEEEecccccchhhhHhhhcchHHHHHHH
Confidence 22 22322 234567787666 4556899888887664 7899999999999998865
No 15
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=3.5e-103 Score=866.33 Aligned_cols=341 Identities=27% Similarity=0.425 Sum_probs=307.9
Q ss_pred CCCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
+++| |+||||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|+
T Consensus 117 ~~~PG~~ivgtDSHT~t~GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~ 196 (465)
T TIGR00170 117 LTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGG 196 (465)
T ss_pred cccCCceEEecCCCccccccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCc
Confidence 4689 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 159 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a 159 (702)
+|++|||+|+||++||+++|||||||++|+||++||||+|++|++||+.+++... .++|.+++.+|+.+ ++|++|
T Consensus 197 ~g~~vEF~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l-~~d~~a 271 (465)
T TIGR00170 197 TGHVIEFCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTL-KTDEGA 271 (465)
T ss_pred ceEEEEEEccccccccHHHhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhc-cCCCCC
Confidence 9999999999999999999999999999999999999999999999998776542 47899999999876 589999
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcc--cccCCCEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVI 237 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~~~~g~v~i 237 (702)
.|+++++||||+|+|+||+|++|+|++||+++.+++....+.. ++..+..+++|++... .+.+..|.+
T Consensus 272 ~Y~~~i~iDls~leP~Va~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~ 341 (465)
T TIGR00170 272 VFDTVITLEANDISPQVTWGTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDK 341 (465)
T ss_pred ceeEEEEEEcccceeeecCCCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEE
Confidence 9999999999999999999999999999999876655432210 0111123445555333 366788999
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCC
Q 005323 238 AAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSG 317 (702)
Q Consensus 238 a~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g 317 (702)
||||||||||++||+.||++| +|+||+||||++|+|||++|+++|+++||+++|+++||.|.+||||+|+|+++
T Consensus 342 ~~IGSCTNgr~~dl~aaA~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~ 415 (465)
T TIGR00170 342 VFIGSCTNSRIEDLRAAAAVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNN 415 (465)
T ss_pred EEEecCCCCCHHHHHHHHHHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCC
Confidence 999999999999999999998 89999999999999999999999999999999999999999999999999998
Q ss_pred CCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhccccc
Q 005323 318 DIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 373 (702)
Q Consensus 318 ~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 373 (702)
++.+ ++++ |+||+||||+||||+ ...+|||||++||||||+|+|+
T Consensus 416 ~~~~-------~ge~---~isTsNRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 416 DRLP-------EGER---CASTSNRNFEGRQGR-GGRTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred CCCC-------CCCE---EEEecCCCCCCCCCC-CCCEEEcCHHHHHHHHhCceec
Confidence 8753 5665 689999999999998 5578999999999999999994
No 16
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=7.5e-103 Score=864.78 Aligned_cols=344 Identities=27% Similarity=0.414 Sum_probs=312.2
Q ss_pred CCCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
+++| |++|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|+
T Consensus 117 ~~~PG~~ivGtDSHT~t~GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~ 196 (466)
T PRK05478 117 LTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGG 196 (466)
T ss_pred cccCCceEEecCCCccccchhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCc
Confidence 4689 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 159 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a 159 (702)
+|++|||+||||++||+++|+|||||++|+|||+||||+|++|++||+.+++.. .+++|.+++++|+.+ ++|++|
T Consensus 197 ~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l-~~D~~a 271 (466)
T PRK05478 197 TGYVIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTL-KSDEDA 271 (466)
T ss_pred ceEEEEEECccccccCHHHHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcc-cCCCCC
Confidence 999999999999999999999999999999999999999999999999554332 578899999999876 589999
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcc--cccCCCEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVI 237 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~~~~g~v~i 237 (702)
+|+++++||||+|||+||+|++|||++||+|+.++|.++++... ++.+.++++|++... .+.+..|.+
T Consensus 272 ~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~g~~~~~~~id~ 341 (466)
T PRK05478 272 VFDKVVTLDAADIEPQVTWGTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYMGLKPGTPITDIKIDK 341 (466)
T ss_pred ceeEEEEEEcccceeeecCCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccccCCccCCCeEEE
Confidence 99999999999999999999999999999999998887776421 111223455654322 367788999
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCC
Q 005323 238 AAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSG 317 (702)
Q Consensus 238 a~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g 317 (702)
||||||||||++||++||++| +|+||+||||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|+++
T Consensus 342 ~~IGSCTNg~~~dl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~ 415 (466)
T PRK05478 342 VFIGSCTNSRIEDLRAAAAVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNP 415 (466)
T ss_pred EEEecCCCCCcHHHHHHHHHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCC
Confidence 999999999999999999999 89999999999999999999999999999999999999999999999999975
Q ss_pred CCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCc
Q 005323 318 DIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPV 381 (702)
Q Consensus 318 ~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl 381 (702)
+.. .+|++ ||||+||||+||||+ ...+|||||++||||||+|+| +||.
T Consensus 416 ~~l-------~~ge~---~vst~NRNF~GR~G~-~~~~yLaSP~~vaAsAi~G~I-----tdpr 463 (466)
T PRK05478 416 DKL-------PPGER---CASTSNRNFEGRQGK-GGRTHLVSPAMAAAAAITGHF-----VDVR 463 (466)
T ss_pred CCC-------CCCCE---EEEecCCCCCCCCCC-CCCEEEcCHHHHHHHHhCCCc-----CChh
Confidence 543 46776 699999999999995 455899999999999999999 4774
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=8.6e-103 Score=864.32 Aligned_cols=344 Identities=28% Similarity=0.443 Sum_probs=313.4
Q ss_pred CCCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
+++| +++|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|+
T Consensus 119 ~~~PG~~ivg~DSHT~t~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~ 198 (471)
T PRK12466 119 LTLPGMVIVCGDSHTTTYGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGA 198 (471)
T ss_pred cccCCceEEccCCCcCCcChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCc
Confidence 4689 579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 159 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a 159 (702)
+||+|||+||||++||+++|||||||++|+||++||||+|++|++||+.++|.++. ++|.++++.|+.+ .+|++|
T Consensus 199 ~g~~iEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~~-~~D~~a 273 (471)
T PRK12466 199 TGYAIEFAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRTL-RSDADA 273 (471)
T ss_pred cceEEEEECCccccCCHHHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhcc-cCCCCC
Confidence 99999999999999999999999999999999999999999999999999987643 5899999999876 589999
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcc--cccCCCEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVI 237 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~~~~g~v~i 237 (702)
.|+++++||||+|||+||+|++|||++||+|+.+++.++++... +....++++||+... .+.+..|.+
T Consensus 274 ~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~l~~g~~~~~~~Id~ 343 (471)
T PRK12466 274 VFDREVEIDAADIAPQVTWGTSPDQAVPITGRVPDPAAEADPAR----------RAAMERALDYMGLTPGTPLAGIPIDR 343 (471)
T ss_pred ceEEEEEEEcccceEeecCCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccCCCcccCCceEEE
Confidence 99999999999999999999999999999999988877655310 001123456665433 366778899
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCC
Q 005323 238 AAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSG 317 (702)
Q Consensus 238 a~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g 317 (702)
||||||||||++||+.||++| +|+||+||||++|+|||++|+++|+++||+++|.++||.|.+||||+|+|+++
T Consensus 344 ~~IGSCTNgr~eDl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~ 417 (471)
T PRK12466 344 VFIGSCTNGRIEDLRAAAAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMND 417 (471)
T ss_pred EEEeccCCCChHHHHHHHHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCC
Confidence 999999999999999999999 89999999999999999999999999999999999999999999999999988
Q ss_pred CCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCc
Q 005323 318 DIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPV 381 (702)
Q Consensus 318 ~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl 381 (702)
++. .+|++ ||||+||||+||||+ ...+|||||++||||||+|+| +||.
T Consensus 418 ~~~-------~~ge~---~vsT~NRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~I-----~dpr 465 (471)
T PRK12466 418 DVL-------APGER---CASTTNRNFEGRQGP-GARTHLMSPAMVAAAAVAGHI-----TDVR 465 (471)
T ss_pred CCC-------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCcEe-----CCHH
Confidence 764 35666 799999999999998 556799999999999999999 4774
No 18
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=7.8e-102 Score=837.76 Aligned_cols=300 Identities=29% Similarity=0.472 Sum_probs=284.1
Q ss_pred CCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 2 LYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 2 ~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
..| |++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++
T Consensus 82 ~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~vPeti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~ 161 (382)
T cd01583 82 TLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGAT 161 (382)
T ss_pred ecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeCCcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCcc
Confidence 357 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||+|||+|+||++||+++|||||||++|+||++||||+|++|++||+.++|.. |+.+ ++|++|.
T Consensus 162 g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~yL~~~~~~~---------------~~~~-~~D~~a~ 225 (382)
T cd01583 162 YKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAY---------------WKEL-KSDEDAE 225 (382)
T ss_pred ceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHHHHhcCccc---------------hhhc-CCCCCCC
Confidence 99999999999999999999999999999999999999999999999988752 3333 4899999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|||+||+|++|||++||+|+. +.+| .+|||
T Consensus 226 Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~--------------~~~I-------------------------d~v~I 266 (382)
T cd01583 226 YDKVVEIDASELEPQVAWPHSPDNVVPVSEVE--------------GIKI-------------------------DQVFI 266 (382)
T ss_pred EEEEEEEEcccceeeEecCCCccceEECcccC--------------Ccce-------------------------eEEEE
Confidence 99999999999999999999999999999987 4444 35999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
|||||||++||++||++| +|+||+|+||++|+|||++|+++|+++||+++|+++||.|.+||||+|+|+++++.
T Consensus 267 GSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~ 340 (382)
T cd01583 267 GSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVL 340 (382)
T ss_pred eccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCcC
Confidence 999999999999999999 89999999999999999999999999999999999999999999999999987753
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccc
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 372 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 372 (702)
.+||+ ||||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 341 -------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~i 382 (382)
T cd01583 341 -------APGER---CVSTSNRNFKGRMGSPGARIYLASPATAAASAITGEI 382 (382)
T ss_pred -------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhcccC
Confidence 46776 6999999999999999999999999999999999987
No 19
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=7.9e-101 Score=834.99 Aligned_cols=323 Identities=33% Similarity=0.546 Sum_probs=289.5
Q ss_pred CCCCC-eEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~pd-tvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
+++|+ ++|||||||||+||||+||||||++|++++|+|++|||++||+|+|+|+|+|++||++|||||+|+++|+.+|+
T Consensus 87 ~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vPe~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~ 166 (412)
T cd01584 87 YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGKLSGWTSPKDVILKVAGILTVKGG 166 (412)
T ss_pred ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCCCEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCc
Confidence 46895 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 159 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a 159 (702)
+|++|||+|+|+++||+++|||||||++|+|||+||||+|++|++||+.++|+++ .+++++|+ ++.+ .+|++|
T Consensus 167 ~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~-~~~~~~y~-~~~l-----~~D~da 239 (412)
T cd01584 167 TGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYLKATGRAEI-ADLADEFK-DDLL-----VADEGA 239 (412)
T ss_pred ceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHHHhcCchHH-HHHHHHHH-hccc-----CCCCCC
Confidence 9999999999999999999999999999999999999999999999999998865 56777776 2223 379999
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAA 239 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~ 239 (702)
.|+++++||||+|||+||+|++|||++||+|+...+.. .|++ -.|.+||
T Consensus 240 ~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~ 288 (412)
T cd01584 240 EYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------------------------NGWP-----LDLRVGL 288 (412)
T ss_pred CeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc--------------------------cCCc-----eeEEEEE
Confidence 99999999999999999999999999999999854321 1111 1356799
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCC-
Q 005323 240 ITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD- 318 (702)
Q Consensus 240 IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~- 318 (702)
||||||||++||+.|| .++|+|+++|+|++ ||++|+|||++|+++|+++||+++|.++||.|.+||||+|+|++++
T Consensus 289 IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~ 365 (412)
T cd01584 289 IGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRATIERDGLLQTFRDAGGIVLANACGPCIGQWDRK 365 (412)
T ss_pred EeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCcccccccCCCCc
Confidence 9999999999977666 55689999999998 8999999999999999999999999999999999999999999875
Q ss_pred CchHHHhhhccCceEEEEeeecCCCCCCCC-CCccCCccccCHHHHHHHHhcccc
Q 005323 319 IDDAVAAAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAYALAGSV 372 (702)
Q Consensus 319 l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~~vaA~AlaG~I 372 (702)
. +.+++.. +||||+||||+||| |+....+|||||++||||||+|++
T Consensus 366 ~-------~~~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAsAi~G~~ 412 (412)
T cd01584 366 D-------IKKGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAGTL 412 (412)
T ss_pred c-------cCCCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHHHHHhcccC
Confidence 2 1234422 37999999999999 555677999999999999999985
No 20
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=2.6e-100 Score=823.72 Aligned_cols=301 Identities=37% Similarity=0.612 Sum_probs=283.7
Q ss_pred CCCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
+..| +++|||||||||+||||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|+
T Consensus 79 ~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~vPetv~V~l~G~l~~gV~aKDviL~li~~lg~~g~ 158 (380)
T cd01585 79 FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKDVILELLRRLTVKGG 158 (380)
T ss_pred ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccCCcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccc
Confidence 3568 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 159 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a 159 (702)
+|++|||+|+|+++||+++|||||||++|+||+++|||+|++|++||+.+||.+++ ..+ .+|++|
T Consensus 159 ~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~yl~~~gr~~~~--------------~~l-~~D~~a 223 (380)
T cd01585 159 VGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLAAQGREDDW--------------VEL-AADADA 223 (380)
T ss_pred cceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCchhc--------------ccc-CCCCCC
Confidence 99999999999999999999999999999999999999999999999999886532 222 489999
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAA 239 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~ 239 (702)
.|+++++||||+|||+||+|++|||++||+|+. |.+| .+||
T Consensus 224 ~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~--------------g~~I-------------------------d~~~ 264 (380)
T cd01585 224 EYDEEIEIDLSELEPLIARPHSPDNVVPVREVA--------------GIKV-------------------------DQVA 264 (380)
T ss_pred ceEEEEEEEcccceeeecCCCCCCceeEhhhhC--------------CceE-------------------------EEEE
Confidence 999999999999999999999999999999987 4333 4599
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCC
Q 005323 240 ITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDI 319 (702)
Q Consensus 240 IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l 319 (702)
||||||+|++||++||++| +|+||+||||++|+|||++|+++|+++||+++|+++||.|.+||||+|+|+++.+
T Consensus 265 IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~ 338 (380)
T cd01585 265 IGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLARNGALADLLAAGARILESACGPCIGMGQAP 338 (380)
T ss_pred EecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCC
Confidence 9999999999999999999 8999999999999999999999999999999999999999999999999997653
Q ss_pred chHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccc
Q 005323 320 DDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 372 (702)
Q Consensus 320 ~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 372 (702)
. +|++ ||||+||||+||||++.+.+|||||++||||||+|+|
T Consensus 339 ~--------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaAsAi~G~i 380 (380)
T cd01585 339 P--------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAAAALTGVI 380 (380)
T ss_pred C--------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHHHHhCccC
Confidence 2 5666 7999999999999998899999999999999999987
No 21
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=2.3e-100 Score=847.33 Aligned_cols=343 Identities=38% Similarity=0.631 Sum_probs=282.3
Q ss_pred CCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 2 LYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 2 ~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
..| ++|||+||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++
T Consensus 119 ~~PG~~vvg~DSHT~t~GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~ 198 (465)
T PF00330_consen 119 VLPGMTVVGTDSHTCTYGALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGAT 198 (465)
T ss_dssp -STTEEEEESSTTGGGGGGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTT
T ss_pred ccceeEEEeCCCCcchhhhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccC
Confidence 568 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
|++|||+|+||++||+++|||||||++|+||++||||+|++|++||+.++|.+...++.+.|.+.+.+| +|++|.
T Consensus 199 ~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~-----~D~dA~ 273 (465)
T PF00330_consen 199 GKAVEFFGPGVESLSMDDRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK-----SDPDAE 273 (465)
T ss_dssp TEEEEEESGGGGGS-HHHHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-------TT--
T ss_pred CeEEEEEChhhhhcCHhhhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc-----CCCccC
Confidence 999999999999999999999999999999999999999999999999999887666666666655543 789999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCC--CcccccCCCEEEE
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG--TPAQLRHGDVVIA 238 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g--~~~~~~~g~v~ia 238 (702)
|+++++||||+|||+||+|++|||++||+|+.+++.++++.. . +....++++|++ ....+.+..|.+|
T Consensus 274 Y~~~i~iDls~leP~va~P~~P~~~~~v~e~~~~~~~~~~~v-~---------~~~~~kal~y~~~~~~~~~~~~~i~~~ 343 (465)
T PF00330_consen 274 YDKVIEIDLSELEPQVAGPHSPDNVVPVSEVAPDFASILDPV-E---------REAAEKALDYMGLKPGQELEGTKIDQA 343 (465)
T ss_dssp -SEEEEEEGGG-SSEEE-SSSTTSEEEHHHHHHHHHHHH--------------CCGCC-EEEECHTTEEEEEETTBEEEE
T ss_pred eeEEEEEEcCccccccccCCCCcccccccccccccccccccc-c---------ccccccccccccccccccccceeeeEE
Confidence 999999999999999999999999999999999988766531 0 111223466664 3358889999999
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCC
Q 005323 239 AITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD 318 (702)
Q Consensus 239 ~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~ 318 (702)
|||||||||+|||++||++|+++|. ++|+||||++|+|||++|+++|+++||+++|+++||.|.+||||+|+|+++
T Consensus 344 ~IgSCTn~~~~dl~~aA~il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~- 419 (465)
T PF00330_consen 344 FIGSCTNGRNEDLRAAAGILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG- 419 (465)
T ss_dssp EEETTTSCTHHHHHHHHHHHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS-
T ss_pred EEcCCcCCCHHHHHHHHHHhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-
Confidence 9999999999999999999987766 799999999999999999999999999999999999999999999999985
Q ss_pred CchHHHhhhcc-CceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcc
Q 005323 319 IDDAVAAAITE-NDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 370 (702)
Q Consensus 319 l~~~~~~~i~~-~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 370 (702)
+.+ .+.+ +++ ||||+||||+||||+..+++|||||++||||||+|
T Consensus 420 ~~~----~~~~~~~~---~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 420 LPD----VLAPLGEV---CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp --C----CHCCTTEE---EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred CCc----ccccccce---EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 211 1223 554 79999999999999999999999999999999998
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=1.9e-99 Score=824.18 Aligned_cols=301 Identities=29% Similarity=0.473 Sum_probs=283.2
Q ss_pred CCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 2 LYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 2 ~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
..| |++|||||||||+||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++
T Consensus 108 ~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~ 187 (412)
T TIGR01343 108 VKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGAT 187 (412)
T ss_pred CCCCcEEEecCCCcCCcCchhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcc
Confidence 467 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||+|||+|+|+++||+++|||||||++|+||++||||+|++|++||+.++|.+ |+.+ .+|++|.
T Consensus 188 ~~~vEf~G~~i~~Ls~~~R~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~---------------~~~~-~~D~da~ 251 (412)
T TIGR01343 188 YMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEP---------------FRVY-KSDEDAE 251 (412)
T ss_pred eEEEEEECCcccccCHHHHhhhhccccccCceeeEecCcHHHHHHHHhhCccc---------------cccc-CCCCCCC
Confidence 99999999999999999999999999999999999999999999999987642 3322 4899999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|||+||+|++|||++||+++. |.+| .+|||
T Consensus 252 Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~--------------g~~i-------------------------d~~~I 292 (412)
T TIGR01343 252 YAKEVEIDASQLEPVVAAPHNVDNVHPVSEVE--------------GIEV-------------------------DQVFI 292 (412)
T ss_pred EEEEEEEEcccceeeEecCCCCCcEEEhHHhC--------------CCee-------------------------eEEEE
Confidence 99999999999999999999999999999987 4444 35999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
|||||||++||++||++| +|+||+||||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++....
T Consensus 293 GSCTngr~~Dl~~aA~il------~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l 366 (412)
T TIGR01343 293 GSCTNGRIEDLRVAAKIL------KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVL 366 (412)
T ss_pred ecCCCCChHHHHHHHHHH------cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC
Confidence 999999999999999999 89999999999999999999999999999999999999999999999999975432
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhccccc
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 373 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 373 (702)
.+|++ ||||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 367 -------~~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 367 -------APGEV---CISTSNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred -------CCCCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 35676 79999999999999988999999999999999999994
No 23
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-99 Score=802.41 Aligned_cols=305 Identities=30% Similarity=0.496 Sum_probs=285.7
Q ss_pred CCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 2 LYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 2 ~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
..| ++|||+||||||+||||+||+|+|++|++.+|++|++|+++||+++|+++|+|++|||||||||+|+++++.+|++
T Consensus 112 ~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t 191 (423)
T COG0065 112 TLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGT 191 (423)
T ss_pred cCCCcEEEecccCcccchhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcc
Confidence 468 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
|+++||+|+.+++|||++|||||||++|+||++|+|+||++|++||+. |.++...|+.+ ++|+||.
T Consensus 192 ~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~-------------~~~a~~~~~~l-~sD~dA~ 257 (423)
T COG0065 192 GYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLKE-------------WDGAVAYWKTL-KSDEDAV 257 (423)
T ss_pred eEEEEEeccchhhCChhhhhhhhhhhhhhcccceeeCCcHhHHHHHHH-------------Hhcccccccee-cCCCCCc
Confidence 999999999999999999999999999999999999999999999993 33444568876 5899999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++|+||+|+|||+||||++|+|++||+++.+++ ++| .++||
T Consensus 258 y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~~------------i~i-------------------------DqVFI 300 (423)
T COG0065 258 YDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPDP------------IKI-------------------------DQVFI 300 (423)
T ss_pred eeEEEEEEcccCCceeeCCCCcccceecccccCCc------------eee-------------------------ceEEE
Confidence 99999999999999999999999999999987321 222 34999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
|||||||++||++||++| +|+||+++||++|+|||++|+++++++||+++|.+|||.|..||||||+|++.+..
T Consensus 301 GSCTNgRieDLr~AA~Il------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL 374 (423)
T COG0065 301 GSCTNGRIEDLRAAAEIL------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVL 374 (423)
T ss_pred eccCCccHHHHHHHHHHh------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcC
Confidence 999999999999999999 79999999999999999999999999999999999999999999999999986654
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhccccc
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 373 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 373 (702)
.+||+ |+||+||||+||||++.+.+||+||+++||+||+|+|.
T Consensus 375 -------~~gE~---c~STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 375 -------GPGER---CASTSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred -------CCCCE---EeeccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 46776 79999999999999888899999999999999999994
No 24
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=2.7e-99 Score=824.20 Aligned_cols=301 Identities=31% Similarity=0.493 Sum_probs=282.2
Q ss_pred CCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 2 LYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 2 ~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
..| +++|||||||||+||||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||++|||||+|+++|+.+|++
T Consensus 111 ~~PG~~ivg~DSHT~t~GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~ 190 (418)
T PRK00402 111 VRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGAT 190 (418)
T ss_pred cCCCcEEEeCCCCccccCccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccc
Confidence 567 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
|++|||+|+|+++||+++|||||||++|+||+++|||+|++|++||+.+++.+ |..+ .+|++|.
T Consensus 191 ~~~vEf~G~~i~~Ls~~~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~---------------~~~l-~~D~~a~ 254 (418)
T PRK00402 191 YKALEFTGETIEALSMDERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRD---------------YKPW-KSDEDAE 254 (418)
T ss_pred eEEEEEECCccccCCHHHHhhhhhcccccCceeeEecCChHHHHHHHhhcccc---------------cccc-cCCCCCC
Confidence 99999999999999999999999999999999999999999999999875322 2222 4899999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|||+||+|++|||++||+++. |.+| .+|||
T Consensus 255 Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~--------------g~~i-------------------------d~~~I 295 (418)
T PRK00402 255 YEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVE--------------GTKV-------------------------DQVFI 295 (418)
T ss_pred EEEEEEEEcccceeeeecCCCccceeEchhhC--------------Ccee-------------------------eEEEE
Confidence 99999999999999999999999999999987 4444 35999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
|||||||++||++||++| +|+||+|+||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|++.+..
T Consensus 296 GSCTngr~eDl~~aA~il------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~ 369 (418)
T PRK00402 296 GSCTNGRLEDLRIAAEIL------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVL 369 (418)
T ss_pred ecCCCCChHHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC
Confidence 999999999999999999 89999999999999999999999999999999999999999999999999865533
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhccccc
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 373 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 373 (702)
.+|++ ||||+||||+||||++.+.+|||||++||||||+|+|+
T Consensus 370 -------~~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 370 -------APGEV---CLSTTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred -------CCCCE---EEEecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 25665 79999999999999988999999999999999999994
No 25
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=6.5e-99 Score=819.99 Aligned_cols=302 Identities=29% Similarity=0.444 Sum_probs=284.8
Q ss_pred CCCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
++.| +++||+||||||+||||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|+
T Consensus 106 ~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~ 185 (412)
T TIGR02086 106 YAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGA 185 (412)
T ss_pred ccCCCcEEEecCCCccccchhhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCcc
Confidence 4678 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 159 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a 159 (702)
+||+|||+|+|+++||+++|||||||++|+||++||||+|++|++||+.++|.+ |..+ .+|++|
T Consensus 186 ~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~---------------~~~~-~~D~~a 249 (412)
T TIGR02086 186 TYMAIEFFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYE---------------FRIL-RPDPGA 249 (412)
T ss_pred ceeEEEEECccccccCHHHHhhhhhcccccCceeeEecCCHHHHHHHHhcCCcc---------------cccc-cCCCCC
Confidence 999999999999999999999999999999999999999999999999988743 2222 489999
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAA 239 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~ 239 (702)
.|+++++||||+|||+||+|++|||++|++++. +.+| .+||
T Consensus 250 ~Y~~~i~iDls~leP~va~P~~P~nv~~v~~~~--------------~~~i-------------------------d~~~ 290 (412)
T TIGR02086 250 KYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVE--------------GTEI-------------------------DQVF 290 (412)
T ss_pred CEEEEEEEEccceeEEecCCCChHhcccchhhc--------------ccce-------------------------eEEE
Confidence 999999999999999999999999999999987 4444 3499
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCC
Q 005323 240 ITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDI 319 (702)
Q Consensus 240 IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l 319 (702)
||||||||++||++||++| +|+||+|+||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++...
T Consensus 291 IGSCTngr~~Dl~~aA~vL------kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~ 364 (412)
T TIGR02086 291 IGSCTNGRIEDLRIAAEIL------EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGV 364 (412)
T ss_pred EeccCCCChHHHHHHHHHH------cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCc
Confidence 9999999999999999999 8999999999999999999999999999999999999999999999999998554
Q ss_pred chHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhccccc
Q 005323 320 DDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 373 (702)
Q Consensus 320 ~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 373 (702)
. .+|++ ||||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 365 ~-------~~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 365 L-------GDGEV---CVSTTNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred C-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 3 36776 69999999999999988999999999999999999994
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=3.8e-98 Score=813.54 Aligned_cols=304 Identities=33% Similarity=0.505 Sum_probs=282.0
Q ss_pred CCCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
++.| +++||+||||||+||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|+
T Consensus 110 ~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~ 189 (419)
T TIGR02083 110 IVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGA 189 (419)
T ss_pred ccCCCeEEEecCCCccccCccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCc
Confidence 4678 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 159 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a 159 (702)
+||+|||+|+|+++||+++|||||||++|+||+++|||+|++|++||+.+++.+ |..+ .+|++|
T Consensus 190 ~~~~iEf~G~~v~~ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~---------------~~~~-~~D~dA 253 (419)
T TIGR02083 190 LYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE---------------EKIY-KADEDA 253 (419)
T ss_pred cceEEEEECCccccCCHHHHhhhhhcccccCceeeEecCChHHHHHHhhCCccc---------------hhcc-cCCCCC
Confidence 999999999999999999999999999999999999999999999999765322 2222 489999
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAA 239 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~ 239 (702)
.|+++++||||+|||+||+|++|||++||+|+... |.+| .+||
T Consensus 254 ~Y~~~~~iDls~leP~va~P~~pdnv~~v~e~~~~------------g~~i-------------------------d~v~ 296 (419)
T TIGR02083 254 KYVRVIEIDLSELEPQVAFPHLPENTKDISEAGKE------------EIKI-------------------------DQVV 296 (419)
T ss_pred CEEEEEEEEccccceeecCCCCcccCcChhhcccc------------cCcc-------------------------CeEE
Confidence 99999999999999999999999999999998621 3444 3489
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCC
Q 005323 240 ITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDI 319 (702)
Q Consensus 240 IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l 319 (702)
||||||||++||++||++| +|+||+++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++.+.
T Consensus 297 IGSCTngr~eDl~~AA~iL------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~ 370 (419)
T TIGR02083 297 IGSCTNGRLEDLRLAAEIL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGI 370 (419)
T ss_pred EEcCCCCChHHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCc
Confidence 9999999999999999999 8999999999999999999999999999999999999999999999999987443
Q ss_pred chHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhccccc
Q 005323 320 DDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 373 (702)
Q Consensus 320 ~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 373 (702)
. .+|++ ||||+||||+||||++.+.+|||||++||||||+|+|+
T Consensus 371 l-------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 371 L-------AEGER---AISTTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred C-------CCCCE---EEEecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 2 35665 79999999999999877889999999999999999994
No 27
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=4e-98 Score=805.90 Aligned_cols=286 Identities=79% Similarity=1.225 Sum_probs=276.2
Q ss_pred CCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCccc
Q 005323 2 LYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVG 81 (702)
Q Consensus 2 ~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~g 81 (702)
++|+++|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||+|||||+|+++|+.+|++|
T Consensus 119 ~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g 198 (404)
T cd01586 119 AYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVG 198 (404)
T ss_pred EeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCccccCCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCcc
Q 005323 82 MFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVY 161 (702)
Q Consensus 82 ~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~Y 161 (702)
++|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 199 ~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D------------------------------------------ 236 (404)
T cd01586 199 KFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD------------------------------------------ 236 (404)
T ss_pred eEEEEECcccccccHhHhhhhhccchhhCceeeEeccC------------------------------------------
Confidence 99999999999999999999999999999999999998
Q ss_pred cEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEee
Q 005323 162 SSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAIT 241 (702)
Q Consensus 162 ~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~Ig 241 (702)
+++|+||||+|||+||+|++|||++||.. + |.+||||
T Consensus 237 d~~i~iDls~leP~Va~P~~Pd~v~~v~~------------------~-------------------------Id~v~IG 273 (404)
T cd01586 237 TQVVELDLSTVEPSVSGPKRPQDRVPLHG------------------S-------------------------VVIAAIT 273 (404)
T ss_pred ceEEEEEcccceeeecCCCCcccccCcCC------------------c-------------------------EeEEEEE
Confidence 45799999999999999999999999922 1 3459999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCch
Q 005323 242 SCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDD 321 (702)
Q Consensus 242 SCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~ 321 (702)
||||||++|++.||++|+|||+++|+||+||||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|+++++.+
T Consensus 274 SCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~ 353 (404)
T cd01586 274 SCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPE 353 (404)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccc
Q 005323 322 AVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 372 (702)
Q Consensus 322 ~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 372 (702)
.++..+.+||+++++|||+||||+||||+..+++|||||++|||+||+|+|
T Consensus 354 ~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~vAAsAi~G~i 404 (404)
T cd01586 354 EVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 (404)
T ss_pred hhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHHHHHHhcccC
Confidence 888889999998889999999999999999999999999999999999986
No 28
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=3.6e-92 Score=754.87 Aligned_cols=283 Identities=32% Similarity=0.514 Sum_probs=260.5
Q ss_pred CCCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
+++| +++|||||||||+||||+||||||++|++++|+++++|+++||+|+|+|+|+|++||++|||||+|+++|+.+|+
T Consensus 79 ~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~ 158 (363)
T cd01582 79 YAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVIVALCGLFNKDQV 158 (363)
T ss_pred ccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCCCEEEEEEecccCCCCCHHHHHHHHHHHhCcCCc
Confidence 4689 567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 159 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a 159 (702)
+|++|||+|+|+++||+++|||||||++|+||+++|||+|
T Consensus 159 ~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D---------------------------------------- 198 (363)
T cd01582 159 LNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD---------------------------------------- 198 (363)
T ss_pred eeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC----------------------------------------
Confidence 9999999999999999999999999999999999999999
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAA 239 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~ 239 (702)
+++++||||+|||+||+|++|+|++|++++... +.+| .+||
T Consensus 199 --~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------~~~i-------------------------d~~~ 239 (363)
T cd01582 199 --AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------NIKI-------------------------NKAY 239 (363)
T ss_pred --ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------CceE-------------------------eEEE
Confidence 447999999999999999999999999998521 3333 3499
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcC-CccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCC
Q 005323 240 ITSCTNTSNPSVMLGAALVAKKACELG-LEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD 318 (702)
Q Consensus 240 IgSCTN~~~~dl~~aA~lla~~A~~~G-~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~ 318 (702)
||||||||++||+.||++|+++..++| ++|+||||++|+|||++|+++|+++||+++|.++||.|.+||||+|+|++++
T Consensus 240 IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~ 319 (363)
T cd01582 240 LVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQG 319 (363)
T ss_pred EEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHHHHHHHcCcHHHHHHCCCEEECCCCeeccCCCCC
Confidence 999999999999999999943322222 3399999999999999999999999999999999999999999999999977
Q ss_pred CchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccc
Q 005323 319 IDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 372 (702)
Q Consensus 319 l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 372 (702)
+. .++|+ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 320 ~~-------~~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~i 363 (363)
T cd01582 320 LL-------EPGEV---GISATNRNFKGRMGSTEALAYLASPAVVAASAISGKI 363 (363)
T ss_pred CC-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCccC
Confidence 64 35676 6999999999999999999999999999999999987
No 29
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=1.8e-90 Score=756.57 Aligned_cols=303 Identities=26% Similarity=0.405 Sum_probs=272.3
Q ss_pred CCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHH----HHH---
Q 005323 2 LYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTV----TQM--- 73 (702)
Q Consensus 2 ~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i----~~~--- 73 (702)
++| +++|||||||||+|| ||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||||+| +++
T Consensus 104 ~~PG~~ivGtDSHT~t~ga---~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l 180 (436)
T cd01581 104 LLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLL 180 (436)
T ss_pred ccCCceEEeeccccCCCCc---eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccc
Confidence 578 567999999999987 799999999999999999999999999999999999999999999985 444
Q ss_pred -----HHhcCccceEEEEecCccCccChhhhhhhhccCcccccccccccCChHH-HHHHhhc----------CCCh----
Q 005323 74 -----LRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD---- 133 (702)
Q Consensus 74 -----l~~~g~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t-~~YL~~~----------gr~~---- 133 (702)
++.+|++||+|||. |+++||+++|||||||++|+|||+||||+|++| ++||+.+ ||.+
T Consensus 181 ~v~~~~g~~g~~g~~iEf~--Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~ 258 (436)
T cd01581 181 TVEKKGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTL 258 (436)
T ss_pred cccccCCcccccceEEEEC--CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccch
Confidence 44556799999996 599999999999999999999999999999988 8999986 5432
Q ss_pred -hHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEecCCc-ccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCc
Q 005323 134 -DTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIP 211 (702)
Q Consensus 134 -~~~~~~e~y~~~~~l~~~~~~~d~~a~Y~~vieiDLs~l-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~ 211 (702)
.+.++++.|.+.+.+| .||++|.|+++++||||+| ||+||+|++|||++|++|+. |.+|
T Consensus 259 ~~~~~~~~~~~~~~~~~----~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~--------------g~~i- 319 (436)
T cd01581 259 LRRIIAMEEWLANPPLL----EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVA--------------GKKI- 319 (436)
T ss_pred hHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhc--------------CCcc-
Confidence 3445667777766655 4799999999999999999 99999999999999999987 4444
Q ss_pred cccccccceeccCCCcccccCCCEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHc
Q 005323 212 KEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNS 291 (702)
Q Consensus 212 ~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~ 291 (702)
.++||||||| +++||+.||.+| ||+|+ +.||++|+|||++|+++|+++
T Consensus 320 ------------------------d~~~IGSCTn-r~eDl~~AA~il------kg~~~-~~vr~~v~P~S~~V~~~~~~~ 367 (436)
T cd01581 320 ------------------------DEVFIGSCMT-NIGHFRAAAKIL------RGKEF-KPTRLWVAPPTRMDWAILQEE 367 (436)
T ss_pred ------------------------ceEEEecCCC-CHHHHHHHHHHH------cCCCC-CCCCEEEECCCHHHHHHHHHc
Confidence 2389999999 999999999999 89996 459999999999999999999
Q ss_pred CcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhccc
Q 005323 292 GLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 371 (702)
Q Consensus 292 Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~ 371 (702)
|++++|.++||.|.+||||+|+|+.+.+ .+|++ ||||+||||+||||+ .+.+|||||++||||||+|+
T Consensus 368 G~~~~l~~aGa~v~~pgCg~C~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~ 435 (436)
T cd01581 368 GYYSIFGDAGARTEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGR 435 (436)
T ss_pred ChHHHHHHcCCEECCCccccccCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCcc
Confidence 9999999999999999999999985443 46787 799999999999999 77899999999999999998
Q ss_pred c
Q 005323 372 V 372 (702)
Q Consensus 372 I 372 (702)
|
T Consensus 436 i 436 (436)
T cd01581 436 I 436 (436)
T ss_pred C
Confidence 7
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=8.2e-87 Score=726.00 Aligned_cols=305 Identities=40% Similarity=0.643 Sum_probs=285.2
Q ss_pred CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCccceEE
Q 005323 5 DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFV 84 (702)
Q Consensus 5 dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~g~~v 84 (702)
++++|+||||||+||||++|||+|++|++++|+||++|+++|++++|+|+|+|++||++||++|+|++.|+.+|++|+++
T Consensus 85 ~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~ 164 (389)
T cd01351 85 DLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIV 164 (389)
T ss_pred CEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCCcEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCcccEE
Q 005323 85 EFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSY 164 (702)
Q Consensus 85 Ef~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~Y~~v 164 (702)
||+|+|+++||+++|+|||||++|+||++|+||+|++|++||+.++|.+... +.+.| |+.+ .||++|.|+++
T Consensus 165 Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl~~~~~~~~~~-~~~~~------~~~l-~~d~~a~y~~~ 236 (389)
T cd01351 165 EFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKN-LWLAF------PEEL-LADEGAEYDQV 236 (389)
T ss_pred EEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHHHhcCCchhhH-HHHHH------Hhcc-CCCCCCCeeEE
Confidence 9999999999999999999999999999999999999999999999887533 22333 3333 58999999999
Q ss_pred EEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEeecCC
Q 005323 165 LELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCT 244 (702)
Q Consensus 165 ieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCT 244 (702)
|+||||+|||+||+|++|||++||+++. +.+ |.++||||||
T Consensus 237 i~iDls~lep~va~p~~p~~~~~v~~~~--------------~~~-------------------------Id~v~IGSCt 277 (389)
T cd01351 237 IEIDLSELEPDISGPNRPDDAVSVSEVE--------------GTK-------------------------IDQVLIGSCT 277 (389)
T ss_pred EEEEhhhceeEEecCCChhhccChhhcc--------------CCc-------------------------eeEEEEecCC
Confidence 9999999999999999999999999987 333 3459999999
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCchHHH
Q 005323 245 NTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVA 324 (702)
Q Consensus 245 N~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~ 324 (702)
|+|++||+.||++| ||+||+|+||++|+|||++|+++++++||+++|+++||.|..+||++|+|+++++.
T Consensus 278 n~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~---- 347 (389)
T cd01351 278 NNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATLSREGYYEILVDSGARILPPGCGPCMGNGARLV---- 347 (389)
T ss_pred CCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHHHHHHcChHHHHHHCCCEEeCCCCcccCCCCCCcC----
Confidence 99999999999999 89999999999999999999999999999999999999999999999999987764
Q ss_pred hhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccc
Q 005323 325 AAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 372 (702)
Q Consensus 325 ~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 372 (702)
.+|++ +|+|+||||+||||+..+++|||||++||||||+|+|
T Consensus 348 ---~~g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAsAl~G~i 389 (389)
T cd01351 348 ---ADGEV---GVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGKI 389 (389)
T ss_pred ---CCCcE---EEEeecCCCccccCCCCCceEECCHHHHHHHHhcCcC
Confidence 35666 6999999999999999889999999999999999987
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=9.6e-84 Score=739.38 Aligned_cols=306 Identities=25% Similarity=0.390 Sum_probs=277.8
Q ss_pred CCCCCe-EEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHH----HHH--
Q 005323 1 MLYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTV----TQM-- 73 (702)
Q Consensus 1 ~~~pdt-vvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i----~~~-- 73 (702)
+++|++ ++||||||||+|| ||||+|++|++.+|++|.+||+|||+|+|+|+|+|++|||+|||||+| +++
T Consensus 475 ~~~Pg~vivG~DSHT~t~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ 551 (835)
T PRK09238 475 MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGL 551 (835)
T ss_pred cccCCeEEEecccccCCCCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhccc
Confidence 468965 5999999999998 789999999999999999999999999999999999999999999999 553
Q ss_pred ------HHhcCccceEEEEecCccCccChhhhhhhhccCccccccccccc-CChHHHHHHhhc----------CCC----
Q 005323 74 ------LRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRS---- 132 (702)
Q Consensus 74 ------l~~~g~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp-~De~t~~YL~~~----------gr~---- 132 (702)
++.++++|++|||. |+++||+++|||||||++|+||++|+|| +|++|++||+.+ ||.
T Consensus 552 ltv~~~~g~~~~~gr~lEf~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~ 629 (835)
T PRK09238 552 LTVEKKGKKNIFSGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDART 629 (835)
T ss_pred ccccccCCccceeeeEEEEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccc
Confidence 44556799999995 6999999999999999999999999999 788999999986 654
Q ss_pred -hhHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEecCCc-ccCccCCCCCCCcccCCccchhhHhhhcccccCCCccC
Q 005323 133 -DDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAI 210 (702)
Q Consensus 133 -~~~~~~~e~y~~~~~l~~~~~~~d~~a~Y~~vieiDLs~l-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i 210 (702)
..+.+.+++|++...+| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+. |.+|
T Consensus 630 ~~~r~~~~~~w~~~~~ll----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~--------------g~~I 691 (835)
T PRK09238 630 LERRIAAMEEWLANPELL----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVA--------------GTKI 691 (835)
T ss_pred hhHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhc--------------CCcc
Confidence 23566788998877776 3799999999999999999 99999999999999999987 4444
Q ss_pred ccccccccceeccCCCcccccCCCEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHH
Q 005323 211 PKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQN 290 (702)
Q Consensus 211 ~~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~ 290 (702)
..||||||| |+++|++.||.+| +|+++++.||+.|+|||++|+++|++
T Consensus 692 -------------------------d~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~ 739 (835)
T PRK09238 692 -------------------------DEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTE 739 (835)
T ss_pred -------------------------CeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHH
Confidence 238999999 9999999999999 89999999999999999999999999
Q ss_pred cCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcc
Q 005323 291 SGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 370 (702)
Q Consensus 291 ~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 370 (702)
+|++++|.++||.|..||||+|+|+.+.+ .+|++ ||||+||||+||||+ .+.+||+||++||||||+|
T Consensus 740 eG~~~~l~~AGa~v~~pGCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G 807 (835)
T PRK09238 740 EGYYSIFGKAGARIEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLG 807 (835)
T ss_pred cCcHHHHHHcCCEECCCcchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCC
Confidence 99999999999999999999999985543 46776 699999999999997 6789999999999999999
Q ss_pred ccc
Q 005323 371 SVN 373 (702)
Q Consensus 371 ~I~ 373 (702)
+|+
T Consensus 808 ~I~ 810 (835)
T PRK09238 808 RIP 810 (835)
T ss_pred ccC
Confidence 993
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=1.9e-82 Score=726.51 Aligned_cols=304 Identities=25% Similarity=0.409 Sum_probs=273.2
Q ss_pred CCCCe-EEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHH------HH
Q 005323 2 LYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQ------ML 74 (702)
Q Consensus 2 ~~pdt-vvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~------~l 74 (702)
++|++ ++||||||||+ +| ||+|+|++|++.+|++|++||++||+|+|+|+|+|++|||+|||||+|.. .|
T Consensus 477 ~~PG~vivG~DSHT~t~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~l 553 (844)
T TIGR00117 477 LLPDTVGTGGDSHTRFP--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLL 553 (844)
T ss_pred ccCCeeEEecccccccc--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCee
Confidence 57965 59999999997 67 99999999999999999999999999999999999999999999999943 33
Q ss_pred Hh------cCccceEEEEecCccCccChhhhhhhhccCcccccccccccCChH-HHHHHhhc----------CCCh----
Q 005323 75 RK------HGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD---- 133 (702)
Q Consensus 75 ~~------~g~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~-t~~YL~~~----------gr~~---- 133 (702)
+. +|++|++|||. |+++||+++|||||||++|+||++|+||+|++ |++||+.+ ||.+
T Consensus 554 tv~k~g~~ng~~gk~lEf~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~ 631 (844)
T TIGR00117 554 TVEKKGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTL 631 (844)
T ss_pred ecccccccccccceEEEEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhh
Confidence 32 56799999996 59999999999999999999999999999965 89999985 6543
Q ss_pred -hHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEecCCc-ccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCc
Q 005323 134 -DTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIP 211 (702)
Q Consensus 134 -~~~~~~e~y~~~~~l~~~~~~~d~~a~Y~~vieiDLs~l-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~ 211 (702)
.+.+.+++|++...+| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+. |.+|
T Consensus 632 ~~~~~~~e~w~~~~~ll----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~--------------g~~I- 692 (844)
T TIGR00117 632 ERRIQGMEKWLANPELL----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQ--------------GDKI- 692 (844)
T ss_pred hHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhc--------------Cccc-
Confidence 3567788888877665 4799999999999999999 99999999999999999997 4444
Q ss_pred cccccccceeccCCCcccccCCCEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHc
Q 005323 212 KEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNS 291 (702)
Q Consensus 212 ~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~ 291 (702)
..+|||||| ++++|++.||.+| +|++++| ||+.|+|||++|+++|+++
T Consensus 693 ------------------------dqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~e 740 (844)
T TIGR00117 693 ------------------------DEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEE 740 (844)
T ss_pred ------------------------ceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHc
Confidence 138999999 7999999999998 8999998 9999999999999999999
Q ss_pred CcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhccc
Q 005323 292 GLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 371 (702)
Q Consensus 292 Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~ 371 (702)
|++++|.++||+|..||||+|+|+.+.+ .+|++ +|||+||||+||||+ .+.+|||||++||||||+|+
T Consensus 741 G~~~~f~~AGa~i~~pGCg~C~Gn~~~v--------~~Ge~---vvSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~ 808 (844)
T TIGR00117 741 GYYSIFGAAGARTEIPGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRMGT-GANVYLGSAELAAVCALLGK 808 (844)
T ss_pred CcHHHHHHcCCEECCCccccccCCCCcC--------CCCCE---EEeccCCCCCCCCCC-CccEEeCCHHHHHHHHhCcc
Confidence 9999999999999999999999995554 35665 689999999999998 56799999999999999999
Q ss_pred cc
Q 005323 372 VN 373 (702)
Q Consensus 372 I~ 373 (702)
|+
T Consensus 809 I~ 810 (844)
T TIGR00117 809 IP 810 (844)
T ss_pred cC
Confidence 93
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=8.6e-81 Score=710.98 Aligned_cols=306 Identities=24% Similarity=0.385 Sum_probs=274.7
Q ss_pred CCCC-CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHH------HH
Q 005323 1 MLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVT------QM 73 (702)
Q Consensus 1 ~~~p-dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~------~~ 73 (702)
++.| ++++|+|||||+..|+ +||.|++|++.+|++|++||+|||+|+|+|+|+|++|||+|||||+|+ +.
T Consensus 549 ~~lPG~vivGgDSHT~fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~ 625 (938)
T PLN00094 549 MLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGL 625 (938)
T ss_pred cccCCeEEEeecCCCCCcccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccc
Confidence 4679 5789999999988776 458899999999999999999999999999999999999999999996 44
Q ss_pred HH------hcCccceEEEEecCccCccChhhhhhhhccCcccccccccccCC-hHHHHHHhh----------cCCC----
Q 005323 74 LR------KHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL----------TGRS---- 132 (702)
Q Consensus 74 l~------~~g~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~D-e~t~~YL~~----------~gr~---- 132 (702)
|+ .++++|++||| +|+++||+++|||||||++|+||++|+||+| +.|++||+. +|+.
T Consensus 626 Ltv~k~gk~~~f~GkilEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt 703 (938)
T PLN00094 626 LTVEKKGKKNVFSGRILEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRT 703 (938)
T ss_pred cchhhcCccceEeeEEEEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhh
Confidence 43 34569999999 6799999999999999999999999999999 478999986 4533
Q ss_pred -hhHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEecCCc-ccCccCCCCCCCcccCCccchhhHhhhcccccCCCccC
Q 005323 133 -DDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAI 210 (702)
Q Consensus 133 -~~~~~~~e~y~~~~~l~~~~~~~d~~a~Y~~vieiDLs~l-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i 210 (702)
+.+++.+|+|++...+| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+. |.+|
T Consensus 704 ~~~ri~~~e~w~~~~~ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~--------------g~kI 765 (938)
T PLN00094 704 LERRIARMQQWLADPELL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVT--------------GDKI 765 (938)
T ss_pred HHHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhc--------------CCcc
Confidence 34566788898877665 4799999999999999999 99999999999999999987 5555
Q ss_pred ccccccccceeccCCCcccccCCCEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHH
Q 005323 211 PKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQN 290 (702)
Q Consensus 211 ~~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~ 290 (702)
..||||||| ++++|++.||.+| +|+++++.||+.|+|||++|+++|++
T Consensus 766 -------------------------DqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~ 813 (938)
T PLN00094 766 -------------------------DEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKA 813 (938)
T ss_pred -------------------------CeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHH
Confidence 238999999 7999999999999 89999999999999999999999999
Q ss_pred cCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcc
Q 005323 291 SGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 370 (702)
Q Consensus 291 ~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 370 (702)
+|++++|.++||+|..||||+|+|+++.+ .+|++ ||||+||||+||||+ .+++||+||++|||+||+|
T Consensus 814 eG~~~if~~AGA~i~~PGCg~CmG~~g~l--------~~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G 881 (938)
T PLN00094 814 EGYYSTFGTVGARTEMPGCSLCMGNQARV--------AEKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILG 881 (938)
T ss_pred cCcHHHHHhCCCEEcCCccccccCCCCcC--------CCCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCC
Confidence 99999999999999999999999996654 36776 699999999999997 6689999999999999999
Q ss_pred ccc
Q 005323 371 SVN 373 (702)
Q Consensus 371 ~I~ 373 (702)
+|+
T Consensus 882 ~It 884 (938)
T PLN00094 882 RLP 884 (938)
T ss_pred ccC
Confidence 993
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=5.7e-65 Score=487.37 Aligned_cols=170 Identities=76% Similarity=1.160 Sum_probs=166.5
Q ss_pred ecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCc
Q 005323 476 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 555 (702)
Q Consensus 476 ~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~ 555 (702)
++||+||||||||||+|+++||||+||.++|++++||||||+||||||||+||+|+|+|++|+|.+|.++++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhcc
Q 005323 556 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 635 (702)
Q Consensus 556 ~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~ 635 (702)
.++||++|++|+++++|+|||||+|||||||||||||+++++||++|||+||+|||++||+|||||||+|+++++++.|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEe
Q 005323 636 LTGHERYTID 645 (702)
Q Consensus 636 ~~~~e~~~id 645 (702)
+++.|.++|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999988874
No 35
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-49 Score=421.52 Aligned_cols=439 Identities=23% Similarity=0.288 Sum_probs=289.2
Q ss_pred HHHHHHhhhcccCCCCCCCCcccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccc
Q 005323 140 ESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVA 219 (702)
Q Consensus 140 e~y~~~~~l~~~~~~~d~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 219 (702)
.+|-++..+|.++. ||+.+.|+.+++|..-++.|.+.|..+||++.|+.--.++....-+ +|-+ ..-+.
T Consensus 12 ~~we~avaywktl~-~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd--------~i~a--~~~er 80 (502)
T KOG0454|consen 12 CKWESAVAYWKTLF-PDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD--------KILA--RASER 80 (502)
T ss_pred cchhhhhhhhhccc-CcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch--------HHHH--hhhhh
Confidence 45677888998874 9999999999999999999999999999999999886654321111 1100 01124
Q ss_pred eeccCCCcccccCCCEEE--EEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCcee-EEEecCCHHHHHHHHHcCcHHH
Q 005323 220 EFNFHGTPAQLRHGDVVI--AAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIK-TSLAPGSGVVTKYLQNSGLQKY 296 (702)
Q Consensus 220 ~~~~~g~~~~~~~g~v~i--a~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~-~~v~PgS~~V~~~l~~~Gll~~ 296 (702)
++.|||.....+..++-+ +|||||||++.+||+.||+++ +|.|++-.+| .+++|||+.|.++++.+|+.++
T Consensus 81 sL~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~i 154 (502)
T KOG0454|consen 81 SLVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRI 154 (502)
T ss_pred ceeeccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHH
Confidence 678888776555444333 999999999999999999999 8999998887 7899999999999999999999
Q ss_pred HHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccc--
Q 005323 297 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNI-- 374 (702)
Q Consensus 297 l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~-- 374 (702)
|.++||.++..||..|.|+.-......+. |-+|+|||||||+|...+. +|+||.+.+|..+.|+-.-
T Consensus 155 f~eagF~wreagcs~clgmnpd~l~~yer----------castsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~~~~ 223 (502)
T KOG0454|consen 155 FNEAGFYWREAGCSFCLGMNPDGLCHYER----------CASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDLGFR 223 (502)
T ss_pred HHhhceehhhccccccccCCchhccHHHH----------hhhccCCCccccccccccc-hhhhhhHHhhccccccccccc
Confidence 99999999999999999987544433444 5799999999999998876 9999999999999998741
Q ss_pred ccc-CCCcccCCCCcccccccCCCChHHHHHHhhhccCchhhHHhhhhccC-CCcccccccCCCCCccccC-CCccc--c
Q 005323 375 DFE-TEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITK-GNPMWNQLSVPSGTLYAWD-PKSTY--I 449 (702)
Q Consensus 375 d~~-~~pl~~~~~g~~v~l~diwP~~~ei~~~~~~~~~~~~~~~~y~~~~~-~~~~w~~~~~~~~~~~~w~-~~s~~--i 449 (702)
.++ ++-+..-+. ..+.|++-.|+ +.++ +..+.+ .+++-.. .+.+.=+ ..|+. +
T Consensus 224 ~~~~k~~~~~~Ps-~~l~~~g~s~s-----------v~~~-----~~li~~ia~ds~t~-----i~~~at~e~~s~~sSl 281 (502)
T KOG0454|consen 224 EFTGKDSLKVSPS-PFLTLKGESPS-----------VLPA-----KDLIVSIATDSSTD-----IPRVATMEFSSTTSSL 281 (502)
T ss_pred cccccccccCCCC-ceEEeCCCCcc-----------cccc-----ccchhhhhcccccc-----ccceecccCCCccccc
Confidence 110 011100000 00111110000 0000 000000 0000000 0000000 01111 1
Q ss_pred cCCCCCCCCCCCCCCCCCccceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhcccc
Q 005323 450 HEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGT 529 (702)
Q Consensus 450 ~~pp~~~~~~~~~~~~~~i~~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~ 529 (702)
..++| ..+. ..+.||||||+|||+ +||+. +.+.+. .+..
T Consensus 282 ~m~~F-----------~tLc-----~vv~dNiDTD~IIP~----------qfltl--i~~~~~-------------~~~~ 320 (502)
T KOG0454|consen 282 GMETF-----------HTLC-----GVVADNIDTDQIIPA----------QFLTL--IPSTGL-------------ILSC 320 (502)
T ss_pred cCcce-----------eeee-----hhhhhhCCcCcccCh----------hhhcc--cccchh-------------hhhh
Confidence 11111 1122 345599999999999 89986 544443 5678
Q ss_pred ccchhhhhhhcCCCCCCceeccCCCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhh
Q 005323 530 FANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFER 609 (702)
Q Consensus 530 F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFar 609 (702)
|..+++. |.... =...||++. +.|+. ..|||+|+|||||||||||+|++.+.|+++|||+||+|
T Consensus 321 f~~~~~d-----g~~k~-------~~~dFv~~v-E~~~~---~siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~ 384 (502)
T KOG0454|consen 321 FYEVALD-----GLPKS-------FVTDFVLPV-EPLRK---YSIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYAR 384 (502)
T ss_pred hhhheec-----CCchh-------hccceeccc-cccce---eEEEeccCCcccccccccCcchhhhcccceecchhHHH
Confidence 8888863 22111 123467776 56655 58999999999999999999999999999999999999
Q ss_pred HHhhhhccCcccceecCCccchhhccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeEE-EEEEecCCHHHHHHHHhcC
Q 005323 610 IHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSF-TCVIRFDTEVELAYFDHGG 688 (702)
Q Consensus 610 If~~Nlin~Gilpl~~~~~~~~~~l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~-~~~~~~~t~~e~~~~~aGG 688 (702)
||++|++.+|.+|..-++..-.+.. ...+..++.+.. .|..+.+++.+|+.+ .+++.-+ ---..-+||
T Consensus 385 IFfrN~~atG~l~~~~s~~~v~de~--~~~dv~~v~l~~------dg~~~~i~~t~~k~~f~lkP~~~---aclV~~ad~ 453 (502)
T KOG0454|consen 385 IFFRNSVATGELPPLPSEVRVCDEC--VTGDVYTVELSV------DGGNQLINHTTGKVYFKLKPFGD---ACLVIDADG 453 (502)
T ss_pred HHHHhHHhcCCccCCCceeeecccc--eecceeeEEccc------CCcceeeeeecccceeecCcccc---cCcccCchH
Confidence 9999999999998765442222211 122334444432 133345555566655 3332111 001234567
Q ss_pred HHHHHHHH
Q 005323 689 ILQYVIRN 696 (702)
Q Consensus 689 ll~~v~~~ 696 (702)
+..|.+++
T Consensus 454 I~~~~~ke 461 (502)
T KOG0454|consen 454 IFAYARKE 461 (502)
T ss_pred HHHhhccc
Confidence 77777654
No 36
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=5.3e-42 Score=374.98 Aligned_cols=316 Identities=26% Similarity=0.409 Sum_probs=264.0
Q ss_pred CCCCCeE-EeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHH-HHH-----
Q 005323 1 MLYPDSV-VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTV-TQM----- 73 (702)
Q Consensus 1 ~~~pdtv-vGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i-~~~----- 73 (702)
++.|||| .|+||||.+.=|+ +|+.|+-=++.+.+++.+.|.+||+|.|+++|+++||||-+||+..| ...
T Consensus 477 mllpDtvgtGGDSHTRfpiGi---sFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQgl 553 (852)
T COG1049 477 MLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGL 553 (852)
T ss_pred ccCCcceecCCcccccccccc---eecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhh
Confidence 4789986 8999999998765 46778888899999999999999999999999999999999999876 222
Q ss_pred HH------hcCccceEEEEecCccCccChhhhhhhhccCcccccccccccC-ChHHHHHHhhc----------CCC----
Q 005323 74 LR------KHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPV-DHVTLQYLKLT----------GRS---- 132 (702)
Q Consensus 74 l~------~~g~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~-De~t~~YL~~~----------gr~---- 132 (702)
|. .+-..|+++|. +|+.+|.+++-++++.-++|..|..+.+-. +|...+||+.. |..
T Consensus 554 ltv~k~~k~NiFsGRIlEi--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rT 631 (852)
T COG1049 554 LTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDART 631 (852)
T ss_pred eeccccCccceecceeEEe--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHH
Confidence 33 23348899999 579999999999999999999999888766 55558999753 222
Q ss_pred -hhHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEecCCc-ccCccCCCCCCCcccCCccchhhHhhhcccccCCCccC
Q 005323 133 -DDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAI 210 (702)
Q Consensus 133 -~~~~~~~e~y~~~~~l~~~~~~~d~~a~Y~~vieiDLs~l-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i 210 (702)
+..++.+|+|+....+. .+|.+|+|..+|||||+.| ||++|+|.+||++..++++. |.+|
T Consensus 632 L~rri~~me~wla~p~ll----e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~--------------~~~i 693 (852)
T COG1049 632 LERRIDKMEAWLANPELL----EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVA--------------GDKI 693 (852)
T ss_pred HHHHHHHHHHhhcCcccc----CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhc--------------CCcc
Confidence 23566777787766543 5899999999999999999 89999999999999999987 3334
Q ss_pred ccccccccceeccCCCcccccCCCEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHH
Q 005323 211 PKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQN 290 (702)
Q Consensus 211 ~~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~ 290 (702)
.-+|||||... +-+++++|++| +|.+=.-..|+.|+|-++...++|.+
T Consensus 694 -------------------------devFiGSCMtn-iGh~ra~~klL------~~~~~~~~~rLwvapPTkmd~~qL~~ 741 (852)
T COG1049 694 -------------------------DEVFIGSCMTN-IGHFRAAGKLL------ENAKGELPTRLWVAPPTKMDAAQLTE 741 (852)
T ss_pred -------------------------ceeeeehhhcc-chhHHHHHHHH------HhcccCCCcceEecCCccccHHHHhh
Confidence 12899999753 57899999998 34331223788999999999999999
Q ss_pred cCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcc
Q 005323 291 SGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 370 (702)
Q Consensus 291 ~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 370 (702)
+|++.+|-++|+++--|||+.|+||... .++|..| +|||+|||++|+|... .+||+|.+++|.+||-|
T Consensus 742 EG~y~ifg~agar~E~PGCsLCMGNQar--------v~dgatV---~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLG 809 (852)
T COG1049 742 EGYYSIFGKAGARIEMPGCSLCMGNQAR--------VADGATV---FSTSTRNFPNRLGKGA-NVYLASAELAAVCAILG 809 (852)
T ss_pred cchHHHHhhccceecCCCcccccccHhh--------hccCCEE---EeeccccCCccccccc-ceeeeccHHHHHHHHHc
Confidence 9999999999999999999999999533 3467764 8999999999999865 58999999999999999
Q ss_pred cccccccCCCcccCCCCcccccccCCCChHHHHHHhh
Q 005323 371 SVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQ 407 (702)
Q Consensus 371 ~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ei~~~~~ 407 (702)
+| |+.+|..+++.
T Consensus 810 ki------------------------Pt~eEY~~~v~ 822 (852)
T COG1049 810 KI------------------------PTVEEYMAYVA 822 (852)
T ss_pred CC------------------------CCHHHHHHHHH
Confidence 99 78888877765
No 37
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-41 Score=328.48 Aligned_cols=164 Identities=25% Similarity=0.437 Sum_probs=134.7
Q ss_pred eecC-CCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 005323 475 LNFG-DSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 553 (702)
Q Consensus 475 ~~~g-dnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~ 553 (702)
.+++ ||||||+|||+ |||+. +++.+| ++++|++||+.. |
T Consensus 12 ~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl-------------~k~~f~~~r~~~--------P------- 51 (191)
T COG0066 12 WPLGRDNVDTDQIIPK----------RFLKT--ITRTGL-------------GKHLFEDWRYLD--------P------- 51 (191)
T ss_pred EecCCCCCccccCccH----------HHhcc--cCHhhh-------------hhcccccccccC--------c-------
Confidence 5666 99999999999 99997 778887 789999999731 3
Q ss_pred CcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhh
Q 005323 554 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 633 (702)
Q Consensus 554 g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 633 (702)
.|+++. ++|+. ++|||||+|||||||||||+|||+.+||+||||+|||||||+||+|+||||+...+++..+.
T Consensus 52 ---dF~~n~-~~yq~---g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~~l 124 (191)
T COG0066 52 ---DFVLNV-PPYQG---GDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTEL 124 (191)
T ss_pred ---chhhcC-CccCC---ccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHHHH
Confidence 245666 67876 79999999999999999999999999999999999999999999999999999887533333
Q ss_pred ccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhc----CHHHHHHHHhh
Q 005323 634 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG----GILQYVIRNLI 698 (702)
Q Consensus 634 l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aG----Gll~~v~~~~~ 698 (702)
+....+.+++|||+. + +|+..++.++.+.+ ++..++++.+| ||+.|.++++.
T Consensus 125 ~~~~~g~~i~VDL~~--------~--~v~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 125 FEDVPGDEVTVDLET--------G--EVTNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHhCCCCEEEEEcCC--------C--eEEeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 433357889999975 2 45544455555554 69999999999 99999998764
No 38
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=1.7e-40 Score=314.64 Aligned_cols=141 Identities=35% Similarity=0.477 Sum_probs=123.8
Q ss_pred ecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCc
Q 005323 476 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 555 (702)
Q Consensus 476 ~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~ 555 (702)
|..+|||||||||||+ ||++ |||.+.+++++|.. ..|.+.. . -....+.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~~--a~n~~~~-~-~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLIG--AINAENG-K-ANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhhh--hhhhhcc-c-cccccccCCCc
Confidence 4578999999999984 7987 88999999999965 4566532 2 23456789999
Q ss_pred ccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhcc
Q 005323 556 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 635 (702)
Q Consensus 556 ~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~ 635 (702)
.+.++++|++|++.+.++|||||+|||||||||||||+|+++||+||||+||+|||++||+|+|||||+|+++++|+.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888876
Q ss_pred CCCCeeEEEe
Q 005323 636 LTGHERYTID 645 (702)
Q Consensus 636 ~~~~e~~~id 645 (702)
.++++++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 456677764
No 39
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=4.5e-40 Score=320.57 Aligned_cols=160 Identities=30% Similarity=0.469 Sum_probs=131.5
Q ss_pred EeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 005323 474 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 553 (702)
Q Consensus 474 l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~ 553 (702)
+.++|||||||||+|+ +||+. +.|.+.|++++|.++|.
T Consensus 4 v~~~gdnIdTD~IiPa----------~~l~~--------------~~~~~~l~~~~f~~~~p------------------ 41 (166)
T PRK14023 4 VWKFGDNINTDDILPG----------KYAPF--------------MVGEDRFHNYAFAHLRP------------------ 41 (166)
T ss_pred eEEcCCCcchhhcchH----------HHhcc--------------CCCHHHHHhhhccCCCh------------------
Confidence 4789999999999999 99975 24668889999998762
Q ss_pred CcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhh
Q 005323 554 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 633 (702)
Q Consensus 554 g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 633 (702)
+.+++|+. ++|||||+|||||||||||+|+++++||++|||+||+|||++||+|+||||++.+ ++++.
T Consensus 42 -------~f~~~~~~---g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~~--~~~~~ 109 (166)
T PRK14023 42 -------EFASTVRP---GDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFESE--EVVDA 109 (166)
T ss_pred -------hhHhhcCC---CCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCCH--HHHHH
Confidence 12245654 6899999999999999999999999999999999999999999999999998743 45666
Q ss_pred ccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhhhhcC
Q 005323 634 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLINVRQ 702 (702)
Q Consensus 634 l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~~~~ 702 (702)
+. .+++++||+.. + +|+. +|++++|.+. ++.+++++++|||++|++++...++|
T Consensus 110 l~--~gd~i~vDl~~--------~--~v~~-~g~~~~~~~~--~~~~~~il~aGGl~~~~~~~~~~~~~ 163 (166)
T PRK14023 110 LE--DGDEVELDLET--------G--VLTR-GGETFQLRPP--PEFLLEALKEGSILEYYRKHGRFPGE 163 (166)
T ss_pred hC--CCCEEEEECCC--------C--EEEE-CCEEEEEeeC--CHHHHHHHHcCCHHHHHHHhCCCCCC
Confidence 53 56789999864 2 3333 5778888873 89999999999999999998654443
No 40
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=6.1e-40 Score=319.32 Aligned_cols=157 Identities=29% Similarity=0.468 Sum_probs=129.0
Q ss_pred EeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 005323 474 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 553 (702)
Q Consensus 474 l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~ 553 (702)
+.++|||||||||+|+ +||+. .|.+.|++++|.++|.
T Consensus 4 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~p------------------ 40 (163)
T PRK00439 4 VWKFGDNIDTDVIIPA----------RYLNT---------------SDPQELAKHCMEDLDP------------------ 40 (163)
T ss_pred EEEeCCCCchhhCChH----------HHhCC---------------CCHHHHHHHHhccCCc------------------
Confidence 4789999999999998 89974 3667789999999873
Q ss_pred CcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhh
Q 005323 554 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 633 (702)
Q Consensus 554 g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 633 (702)
+.+.+.+. +.|||||+|||||||||||+|+|+++||+||||+||+|||++||+|+||||+++++ +++.
T Consensus 41 -------~f~~~~~~---g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~ 108 (163)
T PRK00439 41 -------EFAKKVKP---GDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDK 108 (163)
T ss_pred -------chHhhcCC---ceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHh
Confidence 11123332 58999999999999999999999999999999999999999999999999999975 3666
Q ss_pred ccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhh
Q 005323 634 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 698 (702)
Q Consensus 634 l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 698 (702)
+ ..+++++||+.. +++++ ..+|+++.|.. + ++.+++++++||+++|+++++.
T Consensus 109 l--~~gd~i~idl~~--------~~v~~-~~~g~~~~f~~-l-~~~~~~il~aGGl~~~~~~~~~ 160 (163)
T PRK00439 109 I--EDGDEVEVDLET--------GVITN-LTTGEEYKFKP-I-PEFMLEILKAGGLIEYLKKKGR 160 (163)
T ss_pred c--CCCCEEEEECCC--------CEEEe-CCCCeEEEEee-C-CHHHHHHHHcCCHHHHHHHhcc
Confidence 5 467889999864 23332 23478888873 3 7999999999999999998753
No 41
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.5e-39 Score=313.35 Aligned_cols=152 Identities=30% Similarity=0.502 Sum_probs=123.7
Q ss_pred EeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 005323 474 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 553 (702)
Q Consensus 474 l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~ 553 (702)
+.++|||||||||+|+ +||+. .+.|.|++++|.++|.
T Consensus 3 v~~~gdnIdTD~IiP~----------~~l~~---------------~~~~~l~~~~f~~~~p------------------ 39 (154)
T TIGR02087 3 VWKFGDDIDTDEIIPG----------RYLRT---------------TDPDELASHAMEGIDP------------------ 39 (154)
T ss_pred eEEcCCCcchhhCcHH----------HHhCc---------------CCHHHHHhhccCcCCc------------------
Confidence 3689999999999998 99964 3567789999999762
Q ss_pred CcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhh
Q 005323 554 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 633 (702)
Q Consensus 554 g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 633 (702)
+.+.+.+. .+|||||+|||||||||||+|+|+++||+||||+||+|||++||+|+||||+++++ +.
T Consensus 40 -------~f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~ 105 (154)
T TIGR02087 40 -------EFAKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG 105 (154)
T ss_pred -------hhhhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH
Confidence 11122332 48999999999999999999999999999999999999999999999998888764 22
Q ss_pred ccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHH
Q 005323 634 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 696 (702)
Q Consensus 634 l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~ 696 (702)
+ ..+++++||+.. ++++ ..+|+++.|... ++.+++++++||+++|++++
T Consensus 106 i--~~gd~i~vdl~~--------~~v~--~~~g~~~~~~~l--~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 I--KDGDEVTVDLET--------GEIR--VNGNEEYKGEPL--PDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred C--CCCCEEEEECCC--------CEEE--ECCCeEEEEeCC--CHHHHHHHHcCCHHHHHhcC
Confidence 2 356789999864 2333 446677888543 89999999999999999874
No 42
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=2e-39 Score=312.85 Aligned_cols=154 Identities=30% Similarity=0.532 Sum_probs=124.4
Q ss_pred EeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 005323 474 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 553 (702)
Q Consensus 474 l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~ 553 (702)
+.++|||||||||+|+ +||+. .|.+.|++++|+++|.
T Consensus 3 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~p------------------ 39 (156)
T TIGR02084 3 VHKYGDNVDTDVIIPA----------RYLNT---------------SDPKELAKHCMEDLDK------------------ 39 (156)
T ss_pred eEEcCCCccHhhccHH----------HHcCc---------------CCHHHHHhhhhccCCh------------------
Confidence 4789999999999998 89863 4678889999999863
Q ss_pred CcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhh
Q 005323 554 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 633 (702)
Q Consensus 554 g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 633 (702)
+.+++++. ++|||||+|||||||||||+|+|+++||+||||+||+|||+|||+|+|| |+... ++.++.
T Consensus 40 -------~f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~~-~~~~~~ 107 (156)
T TIGR02084 40 -------DFVKKVKE---GDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVES-EEAVDE 107 (156)
T ss_pred -------hHHhhcCC---CCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-CeecC-HHHHHH
Confidence 11234543 6899999999999999999999999999999999999999999999997 55543 355666
Q ss_pred ccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHH
Q 005323 634 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIR 695 (702)
Q Consensus 634 l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~ 695 (702)
+ ..+++++||++. + +++ +..+|+++.+.. + ++.+++++++|||++|+++
T Consensus 108 l--~~gd~i~idl~~-------~-~v~-~~~~g~~~~~~~-~-~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 I--EEGDEVEVDLEK-------G-IIK-NLTKGKEYKATP-F-PEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred h--CCCCEEEEECCC-------C-EEE-EecCCEEEEeec-C-CHHHHHHHHcCCHHHHhhC
Confidence 5 366789999864 2 232 123578888884 3 7999999999999999874
No 43
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=316.71 Aligned_cols=169 Identities=27% Similarity=0.392 Sum_probs=128.5
Q ss_pred CccceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCc---hhhhccccccchh--hhhhhcC
Q 005323 467 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGN---DEIMARGTFANIR--LVNKLLN 541 (702)
Q Consensus 467 ~i~~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n---~evm~r~~F~~~r--~~n~~~~ 541 (702)
.+ ..|+ .++|||||||||+|+ +||+.. ++| .+.|++++|.+++ +..++.
T Consensus 68 ~~-~Grv-~k~gDNIdTD~IiPa----------~~l~~~-------------~sn~~~~~~l~~~~F~~l~~~~~~r~v- 121 (246)
T PLN00072 68 TF-HGLC-FVVGDNIDTDQIIPA----------EYLTLV-------------PSKPDEYEKLGSYALIGLPAFYKTRFV- 121 (246)
T ss_pred eE-EEeE-EEeCCCcchhhcccH----------HHhccc-------------cccCCCHHHHHHhhhccCCcchhhccc-
Confidence 44 4566 799999999999999 899752 333 6889999998875 111111
Q ss_pred CCCCCceeccCCCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCc-c
Q 005323 542 GEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-I 620 (702)
Q Consensus 542 g~~~~~t~~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~G-i 620 (702)
..|+. + . ...|||||+|||||||||||+|+|+++||+||||+||+|||++||+|+| +
T Consensus 122 ----------~~Gd~----------~-~-~~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLl 179 (246)
T PLN00072 122 ----------EPGEM----------K-T-KYSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEV 179 (246)
T ss_pred ----------CCCCC----------C-C-CceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcc
Confidence 00110 0 1 1479999999999999999999999999999999999999999999999 7
Q ss_pred cceecCCccchhhccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhh
Q 005323 621 IPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 698 (702)
Q Consensus 621 lpl~~~~~~~~~~l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 698 (702)
||++.+ .+.++.+ ..+++++||+.. +.++ +..+|++|.+... +.+++++++|||++|++++.+
T Consensus 180 lpi~~~-~~~~e~i--~~Gd~i~VDl~~--------~~v~-n~t~g~~~~~~p~---~~~~~Il~aGGl~~y~r~~g~ 242 (246)
T PLN00072 180 YPLESE-VRICEEC--KTGDVVTVELGN--------SVLI-NHTTGKEYKLKPI---GDAGPVIDAGGIFAYARKTGM 242 (246)
T ss_pred eeeccc-HHHHHhc--CCCCEEEEECCC--------CEEE-ECCCCeEEEecCC---HHHHHHHHcCCHHHHHHhhCC
Confidence 888743 3445554 366889999853 2232 2346888888764 349999999999999999755
No 44
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=100.00 E-value=4.7e-37 Score=304.21 Aligned_cols=164 Identities=26% Similarity=0.368 Sum_probs=127.4
Q ss_pred ceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCC-CCCCce
Q 005323 470 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG-EVGPKT 548 (702)
Q Consensus 470 ~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g-~~~~~t 548 (702)
..|+....|||||||+|+|+ |||+. +++ +.|++++|++||+.+ .+| ...
T Consensus 8 ~G~~~~l~~dnIDTD~IiP~----------rfl~~--~~~-------------~~l~~~~f~~~R~~~--~~g~~~~--- 57 (188)
T TIGR00171 8 TGLVAPLDAANVDTDAIIPK----------QFLKR--ITR-------------TGFGKHLFFDWRFLD--ANGKEPN--- 57 (188)
T ss_pred EEEEEECCCCcCcHhhhhHH----------HHhCc--CCH-------------HHHHHhccccccccc--cccCCCC---
Confidence 45565555999999999999 99986 444 446899999999842 111 112
Q ss_pred eccCCCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCc
Q 005323 549 IHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPG 628 (702)
Q Consensus 549 ~~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~ 628 (702)
..|++|+ +.|+. ++|||||+|||||||||||+||++.+||+||||+||+||||+||+|+|||||++++.
T Consensus 58 -------p~F~ln~-~~~~~---~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~~ 126 (188)
T TIGR00171 58 -------PDFVLNQ-PQYQG---ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYD 126 (188)
T ss_pred -------cchhhcc-cccCC---CcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCHH
Confidence 2367776 67765 689999999999999999999999999999999999999999999999999999864
Q ss_pred cchhhcc--CCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhc
Q 005323 629 EDAETHG--LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 687 (702)
Q Consensus 629 ~~~~~l~--~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aG 687 (702)
+..+.+. ...+++++||++. + +|+..+|++++|++ ++..++.|-+|
T Consensus 127 ~i~~~~~~~~~~g~~i~vDl~~--------~--~v~~~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 127 EVKELFGQVENQGLQMTVDLEN--------Q--LIHDSEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHHHHhhCCCCEEEEECCC--------C--EEEeCCCeEEEEEe---CHHHHHHHHcC
Confidence 3333221 2567889999964 2 44444677888884 67888888777
No 45
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=100.00 E-value=7.2e-36 Score=298.59 Aligned_cols=161 Identities=27% Similarity=0.436 Sum_probs=127.8
Q ss_pred ceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCcee
Q 005323 470 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 549 (702)
Q Consensus 470 ~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~ 549 (702)
..+++...|||||||+|+|+ +||+. ++ .+.|++++|+++|+.. +|..+|
T Consensus 8 ~G~~~~l~~dnIDTD~IiPa----------~fl~~--~~-------------~~~l~~~~f~~~r~~~---~~~~~p--- 56 (200)
T PRK01641 8 TGLAVPLDRANVDTDQIIPK----------QFLKR--IT-------------RTGFGKGLFDDWRYLD---DGQPNP--- 56 (200)
T ss_pred EEEEEEcCCCCCChhhcchH----------hHcCc--CC-------------HHHHHHhhhccccccc---cCCCCC---
Confidence 45676666999999999999 99975 33 3457999999999742 223333
Q ss_pred ccCCCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCcc
Q 005323 550 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 629 (702)
Q Consensus 550 ~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~ 629 (702)
.|++|+ ++|+. .+|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||+++++
T Consensus 57 -------~F~ln~-~~~~~---~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~~- 124 (200)
T PRK01641 57 -------DFVLNQ-PRYQG---ASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPEE- 124 (200)
T ss_pred -------Cccccc-cccCC---CeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCHH-
Confidence 356666 67765 689999999999999999999999999999999999999999999999999999753
Q ss_pred chhhcc--C--CCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhc
Q 005323 630 DAETHG--L--TGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 687 (702)
Q Consensus 630 ~~~~l~--~--~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aG 687 (702)
+++.|. + ..+++++||+.. + +|+. .|++++|.+ ++..++++.+|
T Consensus 125 ~i~~l~~~~~~~~g~~i~vDl~~--------~--~v~~-~~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 125 DVDELFKLVEANPGAELTVDLEA--------Q--TVTA-PDKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCC--------C--EEec-CCeEEEEEc---CHHHHHHHHcC
Confidence 344442 2 467889999964 2 3443 367788884 68899999998
No 46
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=100.00 E-value=2.9e-35 Score=273.18 Aligned_cols=121 Identities=44% Similarity=0.672 Sum_probs=97.3
Q ss_pred ecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCc
Q 005323 476 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 555 (702)
Q Consensus 476 ~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~ 555 (702)
++|||||||||+|++. +||.+ |++.+.|++++|.+.+.
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~p-------------------- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVDP-------------------- 38 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCCc--------------------
Confidence 5899999999999964 46665 56778899999987542
Q ss_pred ccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhcc
Q 005323 556 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 635 (702)
Q Consensus 556 ~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~ 635 (702)
+.+.+.+. +...|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|||||++++.+.++.+
T Consensus 39 -----~f~~~~~~-~~~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~~- 111 (121)
T cd01579 39 -----TFAERAKA-AGPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDRF- 111 (121)
T ss_pred -----hHHhhccc-CCCeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhhc-
Confidence 11223332 22569999999999999999999999999999999999999999999999999999876666654
Q ss_pred CCCCeeEEEec
Q 005323 636 LTGHERYTIDL 646 (702)
Q Consensus 636 ~~~~e~~~idl 646 (702)
..+++++||+
T Consensus 112 -~~gd~i~id~ 121 (121)
T cd01579 112 -EQGDQLELPL 121 (121)
T ss_pred -CCCCEEEcCC
Confidence 3556666654
No 47
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=100.00 E-value=8.7e-35 Score=272.74 Aligned_cols=127 Identities=43% Similarity=0.555 Sum_probs=100.1
Q ss_pred HHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccccHHHHHHhhCCceEEEeCCc
Q 005323 501 YLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAE 580 (702)
Q Consensus 501 ~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~n 580 (702)
||+.+|+...++++|+.||.||++|.+++|.+.++.|.+.++...+.+.+.|+++.+.+++.+++|+.++.+.||++|+|
T Consensus 4 ~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~n 83 (131)
T PF00694_consen 4 FLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGEN 83 (131)
T ss_dssp CSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-SS
T ss_pred cEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCCc
Confidence 55555555555566666666666666666777777777766666667788899999999999999998777766777899
Q ss_pred cCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCC
Q 005323 581 YGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 627 (702)
Q Consensus 581 fG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~ 627 (702)
||||||||||||+++++||+||||+||+|||++||+|||||||+|++
T Consensus 84 fG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 84 FGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp BTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred ccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 99999999999999999999999999999999999999999999975
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.97 E-value=3.1e-31 Score=234.00 Aligned_cols=73 Identities=33% Similarity=0.522 Sum_probs=62.8
Q ss_pred eEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCeeEEEec
Q 005323 573 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDL 646 (702)
Q Consensus 573 ~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~e~~~idl 646 (702)
+|||+|+|||||||||||+|+++++||++|||+||+|||++||+|+|+||+++.++..++ +....+++++||+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl 91 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL 91 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence 599999999999999999999999999999999999999999999999999988755443 2234555666653
No 49
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.96 E-value=1.1e-29 Score=293.71 Aligned_cols=174 Identities=20% Similarity=0.261 Sum_probs=131.7
Q ss_pred CCCCCCCCccceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhh
Q 005323 460 MSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKL 539 (702)
Q Consensus 460 ~~~~~~~~i~~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~ 539 (702)
..++.++.| .+++ .|+||||+||||||+ +|+.+ |+|.+.+++++|.+.+.
T Consensus 158 ~~~~l~~~i-~g~V-~KvgdnInTD~I~Pa----------~~~~~--------------Rsdipl~a~~~~e~~~p---- 207 (835)
T PRK09238 158 SRPELPEKI-TVTV-FKVTGETNTDDLSPA----------PDAWS--------------RPDIPLHALAMLKNRRP---- 207 (835)
T ss_pred CCCCCcccc-EEEE-EEeCCCCchhccCCc----------ccccc--------------CCCHHHHHHHhccCCCC----
Confidence 344556667 4566 899999999999999 56654 67899999988877541
Q ss_pred cCCCCCCceeccCCCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhc------------CccEEEecch
Q 005323 540 LNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLL------------GVKAVIAKSF 607 (702)
Q Consensus 540 ~~g~~~~~t~~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~l------------Gv~aVIA~SF 607 (702)
+ ..+++++++..| ..|||+|+|||||||||||+|++..+ +.++|||+||
T Consensus 208 -----~-------------f~~~i~~~~~~G-~~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~Sf 268 (835)
T PRK09238 208 -----G-------------PIKQIEELKKKG-HPVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKI 268 (835)
T ss_pred -----c-------------HHHHHHhhccCC-CEEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCch
Confidence 1 123434333333 45999999999999999999997322 2499999999
Q ss_pred hhHHhhhhccCcccceecCCccchhhccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeE-EEEEEecCCHHHHHHHHh
Q 005323 608 ERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDH 686 (702)
Q Consensus 608 arIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~-~~~~~~~~t~~e~~~~~a 686 (702)
+||||+|++|+|+|||+++ ++.+ ..+++++||+.. + +|...+|+. +.|.+. ++.+++++++
T Consensus 269 ArIFf~Nain~GlLpIe~d----~~~i--~~Gd~i~Id~~~--------g--~I~~~~g~~~~~f~l~--p~~~~div~A 330 (835)
T PRK09238 269 APIFFNTMEDSGALPIELD----VSKL--NMGDVIDIYPYK--------G--KIRNETGEVIATFKLK--TDVLLDEVRA 330 (835)
T ss_pred HHHHHhhhHHcCCceEEeC----HHHc--CCCCEEEEECCC--------C--EEEeCCCeEEEEEecC--cHHHHHHHHc
Confidence 9999999999999999995 4444 367789999864 2 333334443 666654 7899999999
Q ss_pred cCHHHHHHHHhhhh
Q 005323 687 GGILQYVIRNLINV 700 (702)
Q Consensus 687 GGll~~v~~~~~~~ 700 (702)
||++||++.|.+..
T Consensus 331 GGli~~i~gr~l~~ 344 (835)
T PRK09238 331 GGRIPLIIGRGLTT 344 (835)
T ss_pred CChHHHHHhcccHH
Confidence 99999999987644
No 50
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.96 E-value=1.8e-30 Score=240.28 Aligned_cols=100 Identities=26% Similarity=0.398 Sum_probs=82.5
Q ss_pred cCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcc
Q 005323 477 FGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEK 556 (702)
Q Consensus 477 ~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~ 556 (702)
..|||+||||+|+ +||.... .+.|.|++++|.+.+.
T Consensus 2 ~~DnInTD~IiP~----------~y~~~~~-------------~~~e~la~~~~e~~dp--------------------- 37 (129)
T cd01674 2 DADNLNTDGIYPG----------KYTYQDD-------------ITPEKMAEVCMENYDS--------------------- 37 (129)
T ss_pred CccccchhccCcc----------cccccCC-------------CCHHHHHHhhcccCCc---------------------
Confidence 3599999999998 7873110 2457889999987542
Q ss_pred cccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCC
Q 005323 557 LSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 627 (702)
Q Consensus 557 ~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~ 627 (702)
+.+.+.+. .+|||+|+|||||||||||+|+++.+||++|||+||+|||+||++|+|||||++++
T Consensus 38 ----~f~~~v~~---gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 38 ----EFSTKTKQ---GDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred ----hhhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 11223332 58999999999999999999999999999999999999999999999999999975
No 51
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.96 E-value=6.3e-30 Score=224.20 Aligned_cols=71 Identities=44% Similarity=0.579 Sum_probs=63.4
Q ss_pred eEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCeeEEEe
Q 005323 573 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID 645 (702)
Q Consensus 573 ~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~e~~~id 645 (702)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|++..+++++ ..+++++||
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i--~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKL--HTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhc--CCCCEEEeC
Confidence 69999999999999999999999999999999999999999999999999999987777664 345555554
No 52
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.93 E-value=5.9e-26 Score=262.11 Aligned_cols=168 Identities=20% Similarity=0.229 Sum_probs=128.0
Q ss_pred CCCCccceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCC
Q 005323 464 GPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGE 543 (702)
Q Consensus 464 ~~~~i~~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~ 543 (702)
.++.|+ .++ .++||+|+||+|||+ +||.. |.+.+.+++++|.+.+.
T Consensus 163 ~~~~i~-g~V-~k~gddinTD~i~Pa----------~~a~s--------------r~D~~~~a~~m~~~~~p-------- 208 (844)
T TIGR00117 163 LAEKIT-VTV-FKVTGETNTDDLSPA----------PDAWT--------------RPDIPLHALAMLKNARE-------- 208 (844)
T ss_pred cchheE-EEE-EEeCCCCchhccCCh----------hhhhc--------------CCCHHHHHHHHhhcCCc--------
Confidence 345564 444 699999999999999 88876 45777788888766542
Q ss_pred CCCceeccCCCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchh-------------hhcCccEEEecchhhH
Q 005323 544 VGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERI 610 (702)
Q Consensus 544 ~~~~t~~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarI 610 (702)
+. .+...+.++.|. .|+|+|+|||||||||||+.++ +.+| .+|||+||+||
T Consensus 209 -~~-------------~~~i~~~~~~Gd-~iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArI 272 (844)
T TIGR00117 209 -GI-------------EPQIEALKQKGF-PVAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPI 272 (844)
T ss_pred -cH-------------HHHHHHhccCCC-eEEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHh
Confidence 11 112123333332 3999999999999999999999 9999 99999999999
Q ss_pred HhhhhccCcccceecCCccchhhccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeE-EEEEEecCCHHHHHHHHhcCH
Q 005323 611 HRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGI 689 (702)
Q Consensus 611 f~~Nlin~Gilpl~~~~~~~~~~l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGl 689 (702)
||||++|.|+|||+++ .+. +..++.++||+.. | +|...+|++ ++|.+. ++..++++++||+
T Consensus 273 Ffrnain~Gl~~ie~~----~~~--l~~GD~i~Id~~~-------G---~I~n~~g~~~~~f~~~--p~~l~div~AGGl 334 (844)
T TIGR00117 273 FFNTMEDSGALPIEVD----VSN--LNMGDVIDIYPYK-------G---EITNHEGELLATFELK--PETLLDEVRAGGR 334 (844)
T ss_pred hhcchhhcCCCeEEeC----Hhh--cCCCCEEEEECCC-------C---EEEeCCCCEEEEeeeC--CHHHHHHHHcCCc
Confidence 9999999999999886 233 3467889999864 2 232234554 788764 7889999999999
Q ss_pred HHHHHHHhhh
Q 005323 690 LQYVIRNLIN 699 (702)
Q Consensus 690 l~~v~~~~~~ 699 (702)
+||+.-|.+.
T Consensus 335 i~~i~gr~l~ 344 (844)
T TIGR00117 335 IPLIIGRGLT 344 (844)
T ss_pred hhhhhcccch
Confidence 9999987664
No 53
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.92 E-value=2.2e-26 Score=215.52 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=52.2
Q ss_pred ceEEEeCCccCCCCCcccccchhh------------hcCccEEEecchhhHHhhhhccCcccceecC
Q 005323 572 DTVILAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 626 (702)
Q Consensus 572 ~~iiVaG~nfG~GSSRE~Aa~a~~------------~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~ 626 (702)
..|||+|+|||||||||||+++++ .+|++||||+||+|||++|++|+|+||++++
T Consensus 51 ~~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~ 117 (131)
T cd01576 51 HPVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLD 117 (131)
T ss_pred CeEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeC
Confidence 349999999999999999999998 7799999999999999999999999999886
No 54
>PRK14812 hypothetical protein; Provisional
Probab=99.84 E-value=2.7e-21 Score=178.84 Aligned_cols=90 Identities=30% Similarity=0.355 Sum_probs=70.8
Q ss_pred CCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhcc-CCCCeeEEEecCCCcccCCCCceEEE
Q 005323 583 SGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG-LTGHERYTIDLPSSVSEIRPGQDVRV 661 (702)
Q Consensus 583 ~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~-~~~~e~~~idl~~~~~~~~~g~~~~v 661 (702)
||||||||+||++.+||+||||+||++||++||+|+||||+++++. .++.|. ...+++++||++. + +|
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~-~~~~l~~~~~g~~i~vDL~~--------~--~v 70 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPRE-VREKLAQLKPTDQVTVDLEQ--------Q--KI 70 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHH-HHHHHhccCCCCEEEEEcCC--------C--EE
Confidence 9999999999999999999999999999999999999999998764 355443 4677889999964 2 44
Q ss_pred EcCCCeEEEEEEecCCHHHHHHHHhc
Q 005323 662 VTDSGKSFTCVIRFDTEVELAYFDHG 687 (702)
Q Consensus 662 ~~~~g~~~~~~~~~~t~~e~~~~~aG 687 (702)
+.. +++++|.+. +..+..|-+|
T Consensus 71 ~~~-~~~~~f~i~---~~~~~~Ll~G 92 (119)
T PRK14812 71 ISP-VEEFTFEID---SEWKHKLLNS 92 (119)
T ss_pred EcC-CeEEEEEEC---HHHHHHHHhC
Confidence 433 467888873 4444555555
No 55
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.83 E-value=8.9e-21 Score=219.18 Aligned_cols=120 Identities=22% Similarity=0.274 Sum_probs=98.7
Q ss_pred cHHHHHHhhCCceEEEeCCccCCCCCcccccchh-------------hhcCccEEEecchhhHHhhhhccCcccceecCC
Q 005323 561 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 627 (702)
Q Consensus 561 ~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~ 627 (702)
+.-...|+.|.| |+|+|+|||||||||||+.++ +..|+.+ ||+||+||||||++|.|+|||+++
T Consensus 283 ~~i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~- 359 (938)
T PLN00094 283 AQIEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD- 359 (938)
T ss_pred HHHHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc-
Confidence 444677777766 999999999999999999999 9999999 999999999999999999999886
Q ss_pred ccchhhccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeEE-EEEEecCCHHHHHHHHhcCHHHHHHHHhhh
Q 005323 628 GEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSF-TCVIRFDTEVELAYFDHGGILQYVIRNLIN 699 (702)
Q Consensus 628 ~~~~~~l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~-~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 699 (702)
.+. +..++.++||+.. | +++ +..+|+++ .|.+. ++..++++++||++||++-|.+.
T Consensus 360 ---v~~--i~~GD~I~id~~~-------G-~I~-n~~~g~~~~~f~~~--p~~l~d~vrAGGli~~i~gr~lt 416 (938)
T PLN00094 360 ---VKN--LNMGDVIDIYPYE-------G-VVK-RHGTDEVITTFSLK--TPVLLDEVRAGGRIPLIIGRGLT 416 (938)
T ss_pred ---Hhh--cCCCCEEEEEcCC-------C-EEE-ecCCCeEEEeccCC--ChHHHHHHHcCCcHhhhhcccch
Confidence 233 3467889999854 3 222 23467777 77764 78899999999999999987664
No 56
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.83 E-value=1.1e-21 Score=210.21 Aligned_cols=297 Identities=16% Similarity=0.082 Sum_probs=229.1
Q ss_pred CeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCccceEE
Q 005323 5 DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFV 84 (702)
Q Consensus 5 dtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~g~~v 84 (702)
+...|+||||++.++.+.++-|+|+.++.....++...+++|.++.++++|..+.-..++|+++.++...-..+...+..
T Consensus 193 EgrqGa~srThlma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~ 272 (502)
T KOG0454|consen 193 EGRQGADSRTHLMAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATM 272 (502)
T ss_pred cccccccccchhhhhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecc
Confidence 56789999999999999999999999999999888899999999999999999999999999999988877788888999
Q ss_pred EEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCC-CCcccE
Q 005323 85 EFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQS-ERVYSS 163 (702)
Q Consensus 85 Ef~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~-~a~Y~~ 163 (702)
||-+--. +|+++.|+|+|||..|-+-|-.|+|+|-.|+-|-....++. |+ .|+ .|. .+.|..
T Consensus 273 e~~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~--------f~----~~~----~dg~~k~~~~ 335 (502)
T KOG0454|consen 273 EFSSTTS-SLGMETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSC--------FY----EVA----LDGLPKSFVT 335 (502)
T ss_pred cCCCccc-cccCcceeeeehhhhhhCCcCcccChhhhcccccchhhhhh--------hh----hhe----ecCCchhhcc
Confidence 9987666 89999999999999999999999999987776655433322 11 122 233 378899
Q ss_pred EEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEeecC
Q 005323 164 YLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSC 243 (702)
Q Consensus 164 vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSC 243 (702)
-+.+|.+..+|....|++ ||.-==++-+ |-.|...++|+|
T Consensus 336 dFv~~vE~~~~~siii~~-DNFGCGSSRE---------------------------------------HAPv~L~~~Gak 375 (502)
T KOG0454|consen 336 DFVLPVEPLRKYSIIIGG-DNFGCGSSRE---------------------------------------HAPVCLGAAGAK 375 (502)
T ss_pred ceeccccccceeEEEecc-CCcccccccc---------------------------------------cCcchhhhcccc
Confidence 999999999999999988 7652222211 112334789999
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHH-----HHHH---cCcHHHHHhcCcEEeccCCccccCC
Q 005323 244 TNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK-----YLQN---SGLQKYLNHLGFHIVGYGCTTCIGN 315 (702)
Q Consensus 244 TN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~-----~l~~---~Gll~~l~~aG~~i~~~gCg~CiG~ 315 (702)
+-..-++.|++ .|+.+..|+.+++ ...+.|..+-+.. .+-. .=++.++...+..=+.|-|..|.++
T Consensus 376 aivA~Sya~IF----frN~~atG~l~~~--~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~ 449 (502)
T KOG0454|consen 376 AIVAPSYARIF----FRNSVATGELPPL--PSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVI 449 (502)
T ss_pred eecchhHHHHH----HHhHHhcCCccCC--CceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCccc
Confidence 99998886654 5667888988773 3344554433321 1111 1245667777775678899999997
Q ss_pred CCCCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhccc
Q 005323 316 SGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 371 (702)
Q Consensus 316 ~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~ 371 (702)
.-+ .+-.- ..-+. +|+|.||||++|||.+..++|||||.+|+|++++|+
T Consensus 450 ~ad---~I~~~-~~ke~---mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 450 DAD---GIFAY-ARKEG---MISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred Cch---HHHHh-hcccc---ccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 421 12211 22232 699999999999999999999999999999999997
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.69 E-value=2.7e-08 Score=98.63 Aligned_cols=163 Identities=22% Similarity=0.311 Sum_probs=98.5
Q ss_pred EEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccC
Q 005323 473 CLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIP 552 (702)
Q Consensus 473 ~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p 552 (702)
+++|+.+.++||++|||.. -| + |.+++.=+...+.+.+ +++
T Consensus 2 ~vfkV~GEtnTDdLSPa~d--------A~--S--------------RpDiPLHA~aMl~~~~---------~~~------ 42 (204)
T PF06434_consen 2 TVFKVPGETNTDDLSPAPD--------AW--S--------------RPDIPLHALAMLKNRR---------PGP------ 42 (204)
T ss_dssp EEEEEEEEEEHHHHS-GGG--------GG--G--------------TTSHHHHHCCTT-S-B---------TTS------
T ss_pred eEEEeCCccccCcCCcccc--------cc--C--------------CCCchHHHHHhccccc---------ccH------
Confidence 4678889999999999942 11 1 5666655555554432 222
Q ss_pred CCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcC------------ccEEEecchhhHHhhhhccCcc
Q 005323 553 TGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG------------VKAVIAKSFERIHRSNLVGMGI 620 (702)
Q Consensus 553 ~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lG------------v~aVIA~SFarIf~~Nlin~Gi 620 (702)
+++-+..|+.|.+.+.| |.--|.||||--|.-...... .-.||...++-||++-+---|-
T Consensus 43 -------l~~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGa 114 (204)
T PF06434_consen 43 -------LEQIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGA 114 (204)
T ss_dssp -------HHHHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-
T ss_pred -------HHHHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCC
Confidence 34446677777775544 889999999999987664433 2468889999999999999999
Q ss_pred cceecCCccchhhccCCCCeeEEEecCCCcccCCCCceEEEEcCCCe-EEEEEEecCCHHHHHHHHhcCHHHHHHHHhhh
Q 005323 621 IPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK-SFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 699 (702)
Q Consensus 621 lpl~~~~~~~~~~l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~-~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 699 (702)
|||+++- .. +..++.++|+.-+ | +|...+|+ ..+|.+. ++..++-+||||-++++.-|-++
T Consensus 115 LPIe~dv----~~--l~~Gdvi~I~p~~-------g---ki~~~~gev~~~f~l~--p~~l~DevrAGGri~LiiGR~Lt 176 (204)
T PF06434_consen 115 LPIECDV----SS--LNTGDVITIYPYE-------G---KIYKENGEVISTFELK--PQTLLDEVRAGGRIPLIIGRGLT 176 (204)
T ss_dssp EEEE-------TT----TT-EEEEETTT-------T---EEEETT--EEEE---S---TCHHHHHHHTSHHHHHHHHHHH
T ss_pred ceEEEec----cc--cCCCcEEEEecCC-------c---EEECCCCCEEEEeecC--chhHHHHHhcCCcEEEEechHHH
Confidence 9998642 23 3456788888643 2 23334454 2345544 56667889999999999987764
Q ss_pred h
Q 005323 700 V 700 (702)
Q Consensus 700 ~ 700 (702)
.
T Consensus 177 ~ 177 (204)
T PF06434_consen 177 T 177 (204)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=96.65 E-value=0.0041 Score=71.16 Aligned_cols=119 Identities=22% Similarity=0.283 Sum_probs=77.2
Q ss_pred cHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcC------------ccEEEecchhhHHhhhhccCcccceecCCc
Q 005323 561 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG------------VKAVIAKSFERIHRSNLVGMGIIPLCFKPG 628 (702)
Q Consensus 561 ~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lG------------v~aVIA~SFarIf~~Nlin~Gilpl~~~~~ 628 (702)
..-+..++.|.+ ++-.|.--|.||||-.|.......+ .-.|+..-.+.||++-+-.-|-|||+++-
T Consensus 212 ~~i~~lk~Kg~~-vayvgdvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~dv- 289 (852)
T COG1049 212 KQIEALKQKGHP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVDV- 289 (852)
T ss_pred HHHHHHhhcCce-EEEeccccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEeee-
Confidence 344566777776 5566679999999998865433222 13455666788999999999999998642
Q ss_pred cchhhccCCCCeeEEEecCCCcccCCCCceEEEEcC-CCeE-EEEEEecCCHHHHHHHHhcCHHHHHHHHhh
Q 005323 629 EDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTD-SGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLI 698 (702)
Q Consensus 629 ~~~~~l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~-~g~~-~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 698 (702)
.. +..++.++|+--+ | +++.. +|+. -.|.+ .++..++-+||||-+|.+.-|.+
T Consensus 290 ---~~--l~~Gdvi~i~py~-------g---ki~~~~~ge~v~~f~l--kt~~lldevrAGgripliiGrgL 344 (852)
T COG1049 290 ---SN--LEMGDVIDIYPYE-------G---KIRNNNTGEVVATFSL--KTDVLLDEVRAGGRIPLIIGRGL 344 (852)
T ss_pred ---cc--ccccceEEeeccC-------C---eeeccCCCcEEEEeec--CchhHHHHHhcCCceeEEEcccc
Confidence 22 2345666766422 2 23332 3442 33443 37888999999999988766544
No 59
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.87 E-value=0.025 Score=63.44 Aligned_cols=71 Identities=24% Similarity=0.297 Sum_probs=61.5
Q ss_pred cCCCEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCC
Q 005323 231 RHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 309 (702)
Q Consensus 231 ~~g~v~ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gC 309 (702)
..+.+.+++|| |=--|++.++..|.+| +|+|+++++++.|. -|+.|+..+.+.|+.+.|+++|..|+.-.|
T Consensus 286 ~~~~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 286 GDEKVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCCCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 44566777775 8888999999999999 89999999987765 688999999999999999999999997665
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=93.90 E-value=0.15 Score=56.09 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=59.1
Q ss_pred cCCCEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCC
Q 005323 231 RHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 309 (702)
Q Consensus 231 ~~g~v~ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gC 309 (702)
.++.+.+.+|| |---|.+.++..|.+| +|++-++++.++|. -|++|+.++.+.|+++.|+++|..++.-.|
T Consensus 286 ~~~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 286 ADGEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 34456667776 7888899999999998 78887888877655 689999999999999999999999997553
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=90.91 E-value=0.57 Score=52.48 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=56.9
Q ss_pred CEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCcccc
Q 005323 234 DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCI 313 (702)
Q Consensus 234 ~v~ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~Ci 313 (702)
++.+++| .|=--|.+.++.-|++| +|++.++++++.|. -|+.|+ +.+.|+.+.++++|+.|+.-.|. |+
T Consensus 278 ~~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v 346 (389)
T cd01355 278 EPDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VV 346 (389)
T ss_pred CCCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-ee
Confidence 4556777 58888899999999999 89877777765554 677777 88999999999999999997777 66
Q ss_pred C
Q 005323 314 G 314 (702)
Q Consensus 314 G 314 (702)
-
T Consensus 347 ~ 347 (389)
T cd01355 347 S 347 (389)
T ss_pred e
Confidence 3
No 62
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=75.53 E-value=1.2 Score=42.78 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=24.6
Q ss_pred ceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCC
Q 005323 470 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDF 512 (702)
Q Consensus 470 ~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~ 512 (702)
.........+|||||+|+|+ +||+. +.+.++
T Consensus 8 ~G~~~~~~~s~idtd~i~p~----------~~~~~--~~~~~l 38 (131)
T PF00694_consen 8 KGVAVPDFNSNIDTDQIIPA----------MFLGT--FANTGL 38 (131)
T ss_dssp EEEEEEEHHSTGGGHHHSCG----------GHHHS--CGCTTT
T ss_pred eCccccccccccccccccHH----------HHhcc--ccCcch
Confidence 34466788999999999999 89986 666655
No 63
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=36.75 E-value=39 Score=34.50 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=45.6
Q ss_pred CceeEEEecC--CHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEEeeecCCCCCCCC
Q 005323 271 PWIKTSLAPG--SGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRV 348 (702)
Q Consensus 271 ~~V~~~v~Pg--S~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~ 348 (702)
+.+...|.|| |..+.+-+.+.|+++.|.+.=.. .-|-=|||-|+- -+..++... .+......-=-+-+||.-||+
T Consensus 37 ~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~-G~Pv~GTCAGlI-lLakei~~~-~~~~~Lg~mdi~V~RNAfGRQ 113 (194)
T COG0311 37 EGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIAD-GLPVFGTCAGLI-LLAKEILDG-PEQPLLGLLDVTVRRNAFGRQ 113 (194)
T ss_pred ccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHc-CCceEEechhhh-hhhhhhcCC-CCCcccceEEEEEEccccccc
Confidence 3578899999 67788889999999987765433 334557899862 122222210 011110000125699999998
Q ss_pred C
Q 005323 349 H 349 (702)
Q Consensus 349 g 349 (702)
=
T Consensus 114 ~ 114 (194)
T COG0311 114 V 114 (194)
T ss_pred c
Confidence 3
No 64
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=32.35 E-value=38 Score=29.97 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=25.6
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 005323 239 AITSCTNTSNPSVMLGAALVAKKACELGLEVK 270 (702)
Q Consensus 239 ~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~ 270 (702)
+|++|..|.-.-. +||+.|.+.|.+.|..++
T Consensus 2 ~vtacp~G~Aht~-lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTF-MAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 5899999987665 578888888999998776
No 65
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=28.98 E-value=59 Score=31.02 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=27.3
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 005323 237 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 270 (702)
Q Consensus 237 ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~ 270 (702)
|++|++|..|=-.-.| ||+-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 5889999999766666 67788899999998777
No 66
>COG1833 Uri superfamily endonuclease [Replication, recombination, and repair]
Probab=22.27 E-value=1.7e+02 Score=28.29 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=21.0
Q ss_pred HcCcHHHHHhcCcEEeccCCccccCC
Q 005323 290 NSGLQKYLNHLGFHIVGYGCTTCIGN 315 (702)
Q Consensus 290 ~~Gll~~l~~aG~~i~~~gCg~CiG~ 315 (702)
+..+-..|.+-+-.|.++||+-|---
T Consensus 79 Ecela~~ls~~~~~I~gFG~SDc~ck 104 (132)
T COG1833 79 ECELARALSKNFEGIEGFGCSDCKCK 104 (132)
T ss_pred HHHHHHHHHhcCCccCCCCCCCCCCc
Confidence 45566778888999999999998754
No 67
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=21.93 E-value=1e+02 Score=28.96 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=27.2
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 005323 237 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 270 (702)
Q Consensus 237 ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~ 270 (702)
+.+|++|..|.-.-+ +||+.|.+.|.+.|.+++
T Consensus 5 ivaVtacp~GiAht~-lAAeaL~kAA~~~G~~i~ 37 (114)
T PRK10427 5 LVAVTACVSGVAHTY-MAAERLEKLCQLEKWGVK 37 (114)
T ss_pred EEEEeeCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 478999999987665 578888888999998776
No 68
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.92 E-value=1.2e+02 Score=34.76 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=34.8
Q ss_pred HhcCC--ccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcC--cEEeccCCccccC
Q 005323 263 CELGL--EVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLG--FHIVGYGCTTCIG 314 (702)
Q Consensus 263 ~~~G~--kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG--~~i~~~gCg~CiG 314 (702)
.+.|+ +++|..=..+-=|+.+...+-...-+.+.|.+.| +.|+.++||+|-=
T Consensus 296 e~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtr 351 (431)
T TIGR01917 296 EKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTR 351 (431)
T ss_pred HHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchh
Confidence 34564 6887764444445544443334455889999888 5788999999973
Done!