Query 005323
Match_columns 702
No_of_seqs 342 out of 2290
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 22:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 100.0 6E-199 2E-203 1716.1 52.1 693 1-698 194-887 (888)
2 1c96_A Mitochondrial aconitase 100.0 3E-155 1E-159 1337.3 49.5 587 1-696 153-750 (753)
3 1l5j_A Aconitate hydratase 2; 100.0 1.4E-84 4.7E-89 753.2 30.9 322 1-413 486-837 (865)
4 2pkp_A Homoaconitase small sub 100.0 2.7E-41 9.3E-46 329.4 10.7 156 474-699 7-162 (170)
5 1l5j_A Aconitate hydratase 2; 100.0 3.7E-42 1.3E-46 399.2 0.7 281 344-700 49-355 (865)
6 1v7l_A 3-isopropylmalate dehyd 100.0 6.9E-41 2.3E-45 324.4 8.5 151 474-697 7-158 (163)
7 2hcu_A 3-isopropylmalate dehyd 100.0 1.4E-40 4.8E-45 333.6 10.6 180 452-687 5-187 (213)
8 3vba_A Isopropylmalate/citrama 100.0 4.6E-40 1.6E-44 321.1 12.0 161 470-699 6-166 (176)
9 3q3w_A 3-isopropylmalate dehyd 100.0 9E-38 3.1E-42 310.4 8.0 163 470-687 11-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 100.0 1.6E-36 5.4E-41 294.0 8.2 155 470-687 11-169 (171)
11 2r4q_A Phosphotransferase syst 50.2 11 0.00039 33.6 3.4 33 237-270 5-37 (106)
12 2r48_A Phosphotransferase syst 48.9 12 0.00039 33.5 3.3 33 237-270 5-37 (106)
13 2kyr_A Fructose-like phosphotr 41.1 15 0.0005 33.2 2.7 33 237-270 8-40 (111)
14 2m1z_A LMO0427 protein; homolo 36.9 18 0.00062 32.3 2.6 33 237-270 5-37 (106)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=6.1e-199 Score=1716.13 Aligned_cols=693 Identities=61% Similarity=1.063 Sum_probs=654.9
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
++||||||||||||||+||||+|||||||+|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++
T Consensus 194 ~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~PevvgV~ltG~L~~gVtakDviL~i~~~l~~~G~v 273 (888)
T 2b3y_A 194 YYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVV 273 (888)
T ss_dssp EEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCT
T ss_pred ccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecCCCEEEEEEEccCCCCcchhHHHHHHHHHhccCCcc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCC-CCC
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQ-SER 159 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d-~~a 159 (702)
||+|||+||||++||+++|||||||++|+|||+|+||+|++|++||+.|||++++++++|+|.+++++|+++. +| ++|
T Consensus 274 Gk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~~~~~e~y~~a~~l~~~l~-~d~~dA 352 (888)
T 2b3y_A 274 GKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFN-DPSQDP 352 (888)
T ss_dssp TCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHHHHHHHHTCCCCTT-CGGGCC
T ss_pred ceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhccC-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999988999999999999998753 45 899
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAA 239 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~ 239 (702)
.|+++++||||+|||+||||++|||++||+++.++|.+++.++.+++|+.-+.+.+.+.+.++|+|+++.|.||+|++||
T Consensus 353 ~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~ 432 (888)
T 2b3y_A 353 DFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAA 432 (888)
T ss_dssp CCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEE
T ss_pred ceEEEEEEEhhheeEeecCCCCcccccChHHhhhhHHHhhhcccccccccccchhhcccceeecCCccccccCCcEEEEE
Confidence 99999999999999999999999999999999999887776544443332111111011346788999999999999999
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCC
Q 005323 240 ITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDI 319 (702)
Q Consensus 240 IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l 319 (702)
|||||||||+|+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++||.|++||||+||||++++
T Consensus 433 IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l 512 (888)
T 2b3y_A 433 ITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPL 512 (888)
T ss_dssp ECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCC
T ss_pred EecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCCCcceeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCCh
Q 005323 320 DDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSS 399 (702)
Q Consensus 320 ~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~ 399 (702)
.++++.+|.+||++++||||+||||+||||+..+++|||||++||||||+|+|++|+++||++.++||++|||+||||+.
T Consensus 513 ~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~ 592 (888)
T 2b3y_A 513 PEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTR 592 (888)
T ss_dssp CHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCH
T ss_pred CchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHHHHhcCeeecccccCccccCCCCCcccccccCCch
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCC
Q 005323 400 EEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGD 479 (702)
Q Consensus 400 ~ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gd 479 (702)
+|+++++.+.+++++|.+.|..++.+++.|+.++.|.++.|+|+++||||++||||++++..+++++++.++|+|+++||
T Consensus 593 ~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gd 672 (888)
T 2b3y_A 593 DEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGD 672 (888)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTTCSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCS
T ss_pred hhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCCcccccCCCCccccccCCCCcccccCcEEEEEecC
Confidence 99999999999999999999999999999999998988999999999999999999999888877889999999999999
Q ss_pred CCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCccccc
Q 005323 480 SITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSV 559 (702)
Q Consensus 480 nitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v 559 (702)
|||||||||||+|+++||||+||+++|+++++|||||+||||||||+|++|+|+|+.|+|.+ .++++|+|+|+|+.+++
T Consensus 673 nitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~ 751 (888)
T 2b3y_A 673 SVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDV 751 (888)
T ss_dssp CCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHHHHTTTCCTTCEETTTT-EECSEEEETTTTEEEEH
T ss_pred CccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHHhhhccccccccccccc-ccCCceeecCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999986 78999999999999999
Q ss_pred ccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCC
Q 005323 560 FDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGH 639 (702)
Q Consensus 560 ~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~ 639 (702)
||+|++|+++|.++|||||+|||||||||||+|+++++||+||||+||+||||+||+|||||||+|+++++++.+.+.++
T Consensus 752 ~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~ 831 (888)
T 2b3y_A 752 FDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQ 831 (888)
T ss_dssp HHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSC
T ss_pred hhhHHHHHhcCCceEEECCCCCCCCccHHHHHHHHHHcCeeEEEEhhHHHHHHhhhhhcCCceEeecccccHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhh
Q 005323 640 ERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 698 (702)
Q Consensus 640 e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 698 (702)
+.++|+|.+ .++||+.+++...+|++|++.++++++.|++|+++||+|||++++++
T Consensus 832 ~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 887 (888)
T 2b3y_A 832 ERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 887 (888)
T ss_dssp SCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHHHHTSHHHHHHHHHH
T ss_pred ceEEEEccc---ccCCCcEEEEEeCCCeEEEEEecCCCHHHHHHHHcCCHHHHHHHHhh
Confidence 899999753 48899877764467899999999899999999999999999999986
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=3.3e-155 Score=1337.26 Aligned_cols=587 Identities=32% Similarity=0.493 Sum_probs=508.6
Q ss_pred CCCCC-eEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCc
Q 005323 1 MLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV 79 (702)
Q Consensus 1 ~~~pd-tvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~ 79 (702)
+++|+ ++|||||||||+||||+||||||++|++++|+||+|||++||+|+|+|+|+|++|||||||||+|+++|+++|+
T Consensus 153 ~~~Pg~~ivGtDSHT~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~ 232 (753)
T 1c96_A 153 YAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGG 232 (753)
T ss_dssp TCCTTCEEEESSTTGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTT
T ss_pred ccCCCcEEecCCCCCCccchhhhheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCc
Confidence 47996 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCC
Q 005323 80 VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 159 (702)
Q Consensus 80 ~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a 159 (702)
+|++|||+||||++||+++|||||||++|+|||+|+||+|++|++||+.++|.+ .++++++|++ .+ .+|++|
T Consensus 233 ~g~~vEf~G~gv~~LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~------~l-~~D~~A 304 (753)
T 1c96_A 233 TGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD------HL-VPDPGC 304 (753)
T ss_dssp TTEEEEEESGGGGGSCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG------GS-SCCTTC
T ss_pred ceEEEEEECCccccCCcchhhhhhccchhhCcccccccCcHHHHHHHHhcCCcH-HHHHHHHHHh------hc-cCCCCC
Confidence 999999999999999999999999999999999999999999999999999877 4566666543 22 479999
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAA 239 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~ 239 (702)
.|+++++||||+|||+||||++|||++||+++...+.+ ++++ -.|++||
T Consensus 305 ~Yd~~ieiDls~leP~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~-----~~Vd~~~ 353 (753)
T 1c96_A 305 HYDQVIEINLSELKPHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP-----LDIRVGL 353 (753)
T ss_dssp CCSEEEEEEGGGCCCEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-----CBEEEEE
T ss_pred ceeEEEEEEccccceeecCCCCCcceeEhHHhhhhHhh--------------------------cCCc-----cceEEEE
Confidence 99999999999999999999999999999999855431 1111 1467899
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCC
Q 005323 240 ITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDI 319 (702)
Q Consensus 240 IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l 319 (702)
||||||||++||+.|| .|+|+|+++|+ +++||++|+|||++|++||+++||+++|+++||.|++||||+|+||+++.
T Consensus 354 IGSCTN~~~~Dl~~AA-~ilkga~~~~v--~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~ 430 (753)
T 1c96_A 354 IGSCTNSSYEDMGRSA-AVAKQALAHGL--KCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 430 (753)
T ss_dssp EBTTTBCSHHHHHHHH-HHHHHHHTTTC--CCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCC
T ss_pred EecCCCCCHHHHHHHH-HHhccHhhcCC--CCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCcEEecCCceeeecCCCCc
Confidence 9999999999976655 55678887664 66699999999999999999999999999999999999999999999864
Q ss_pred chHHHhhhccCceEEEEeeecCCCCCCCC-CCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCC
Q 005323 320 DDAVAAAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPS 398 (702)
Q Consensus 320 ~~~~~~~i~~~~~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~ 398 (702)
. +..++- .+||||+||||+||| |++.+.+|||||++||||||+|+|++|+.+||+ .++||++|||+| |+
T Consensus 431 ~------~~~~~~-~~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~ 500 (753)
T 1c96_A 431 D------IKKGEK-NTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PD 500 (753)
T ss_dssp S------SCTTCC-EEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CC
T ss_pred c------cccCCc-ceEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCcccccc-cCCCCCeeeecC--Cc
Confidence 2 012222 147999999999999 466678999999999999999999999999999 889999999999 88
Q ss_pred hHHHHHHhhhccCchhhHHhhhhccCCCcccccccCCC-CCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeec
Q 005323 399 SEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNF 477 (702)
Q Consensus 399 ~~ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~-~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~ 477 (702)
.+|+++ ++|. .++..|+..+.+. +..|.|+++|+|+++||+|++. +..++.++++|+++
T Consensus 501 ~~e~~~--------~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~~-----~~~~~~~~~vL~kl 560 (753)
T 1c96_A 501 ADELPR--------AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDKW-----DGKDLEDLQILIKV 560 (753)
T ss_dssp CCSSCS--------SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCCC-----CSSCEEEEEEEEEB
T ss_pred cchhhh--------hhcc-------CCccccccCCCCCCcceEeeCCCCccccCCCCCCCC-----CccccccceEEEec
Confidence 888532 2332 4567888776554 4689999999999999999753 23578899999999
Q ss_pred CCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcC--CCCC---CceeccC
Q 005323 478 GDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GEVG---PKTIHIP 552 (702)
Q Consensus 478 gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~--g~~~---~~t~~~p 552 (702)
||||||||||||| +||++| ++|+|++ .|.|.. +.++ .+++|+|
T Consensus 561 gd~iTTDhIsPAG---------~~L~~r----------------------g~f~ni~-~n~l~~~~~~~~g~~~~~~~~~ 608 (753)
T 1c96_A 561 KGKCTTDHISAAG---------PWLKFR----------------------GHLDNIS-NNLLIGAINIENRKANSVRNAV 608 (753)
T ss_dssp CSCCBHHHHBCCG---------GGGGGT----------------------BCHHHHG-GGBTTTSBBTTTCCBSCEECTT
T ss_pred cCCcccccccccc---------hhhccc----------------------cchhhhh-hhhccccccccCCCcceeEEec
Confidence 9999999999997 799872 4566666 455532 2233 3788999
Q ss_pred CCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchh
Q 005323 553 TGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAE 632 (702)
Q Consensus 553 ~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~ 632 (702)
+|+.+.++++|++|+++|.++|||||+|||||||||||+|+++++||+||||+||+||||+||+|||||||+|+++++++
T Consensus 609 ~~~~~~~~d~a~~y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gllpl~~~~~~~~~ 688 (753)
T 1c96_A 609 TQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYN 688 (753)
T ss_dssp TCCEECHHHHHHHHHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGG
T ss_pred CCcccccHHHHHHHHHhCCCeEEEecCcCCCCcchHHHHhhHHHcCeeEEEehhHHHHHHhhhhhcCCcceeecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hccCCCCeeEEEecCCCcccCCCCceEEE--EcCCCeEEEEEEec-CCHHHHHHHHhcCHHHHHHHH
Q 005323 633 THGLTGHERYTIDLPSSVSEIRPGQDVRV--VTDSGKSFTCVIRF-DTEVELAYFDHGGILQYVIRN 696 (702)
Q Consensus 633 ~l~~~~~e~~~idl~~~~~~~~~g~~~~v--~~~~g~~~~~~~~~-~t~~e~~~~~aGGll~~v~~~ 696 (702)
.| .++++++|+- +.++.+|+.+++ +..+|++++|.+.+ +++.|++||++||+|||++++
T Consensus 689 ~l--~~gd~i~I~g---l~~l~~g~~v~~~i~~~~g~~~~~~~~~~~t~~e~~~~~aGGlLnyvk~~ 750 (753)
T 1c96_A 689 KI--HPVDKLTIQG---LKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRMKEL 750 (753)
T ss_dssp GC--CTTCEEEEEC---GGGCCTTCCEEEEEECTTSCEEEEEEECCCCHHHHHHHHHTSHHHHHHHH
T ss_pred hc--CCCCEEEEcC---hHHcCCCceEEEEEEecCCcEEEEEEeCCCCHHHHHHHHcCCHHHHHHHh
Confidence 65 5778899882 235778876654 45678877777544 499999999999999999986
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=1.4e-84 Score=753.18 Aligned_cols=322 Identities=24% Similarity=0.382 Sum_probs=285.6
Q ss_pred CCCCCe-EEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHh---
Q 005323 1 MLYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRK--- 76 (702)
Q Consensus 1 ~~~pdt-vvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~--- 76 (702)
+++|++ +|||||||||+||+| +|.|++|++.+|++|++|+++||+|+|+|+|+|++|||+|||||+|++.+.+
T Consensus 486 ~~~PG~~ivGtDSHT~~~~Glg---~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaKDvIL~i~~~~i~~G~ 562 (865)
T 1l5j_A 486 MLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGL 562 (865)
T ss_dssp GCCTTCEEEESSTTCCCSSSEE---CCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHTTS
T ss_pred cccccceEEeCCCCccccccce---eCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCCCCChHHHHHHHHHHHHhccc
Confidence 478965 599999999999765 5779999999999999999999999999999999999999999999887753
Q ss_pred ---------cCccceEEEEecCccCccChhhhhhhhccCcccccccccccCC-hHHHHHHhh----------cCCC----
Q 005323 77 ---------HGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL----------TGRS---- 132 (702)
Q Consensus 77 ---------~g~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~D-e~t~~YL~~----------~gr~---- 132 (702)
++++|++||| +||++||+++|||||||++|+|||+|+||+| ++|++||+. +||.
T Consensus 563 l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL~~~~~~~~~m~~~g~~~~~~ 640 (865)
T 1l5j_A 563 LTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRT 640 (865)
T ss_dssp BCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred ccccccCcccceeeEEEEE--cccccCChhhhhhHhhcchhcCCeeEEEeCCHHHHHHHHHhhhhhhhhhhccCCccchh
Confidence 3448999999 5799999999999999999999999999976 788999998 6764
Q ss_pred -hhHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEecCCc-ccCccCCCCCCCcccCCccchhhHhhhcccccCCCccC
Q 005323 133 -DDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAI 210 (702)
Q Consensus 133 -~~~~~~~e~y~~~~~l~~~~~~~d~~a~Y~~vieiDLs~l-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i 210 (702)
+++.+.+++|.+++++|+ +|++|.|+++++||||+| ||+||+|++|||++|++++. +.+|
T Consensus 641 ~~~~~~~~~~~~~~~~~l~----~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~--------------~~~I 702 (865)
T 1l5j_A 641 LERRIQGMEKWLANPELLE----ADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQ--------------GEKI 702 (865)
T ss_dssp HHHHHHHHHHHHHSCCCCC----CCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTT--------------TCBC
T ss_pred HHHHHHHHHHHHhccceec----cCCCCcEEEEEEEEcccCCCCEecCCCChHhccchhhhc--------------cccc
Confidence 456777889988887763 699999999999999999 89999999999999999987 3334
Q ss_pred ccccccccceeccCCCcccccCCCEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHH
Q 005323 211 PKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQN 290 (702)
Q Consensus 211 ~~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~ 290 (702)
..+|||||||+ ++||+.||.+| ||++++++||++|+|||++|+++|++
T Consensus 703 -------------------------d~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~v~~~V~PgS~~V~~~l~~ 750 (865)
T 1l5j_A 703 -------------------------DEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLPTRLWVAPPTRMDAAQLTE 750 (865)
T ss_dssp -------------------------CEEEECSTTCC-HHHHHHHHHHH------HHSCSCCSSEEEECCSBHHHHHHHHH
T ss_pred -------------------------ceEEEecCCCC-HHHHHHHHHHH------cCcccCCCCCEEEECCCHHHHHHHHH
Confidence 13899999877 99999999988 78889999999999999999999999
Q ss_pred cCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcc
Q 005323 291 SGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 370 (702)
Q Consensus 291 ~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 370 (702)
+|++++|.++||+|.+||||+|+||++.+ .+|++ |+||+||||+||||+ ...+|||||++||||||+|
T Consensus 751 eGl~~~l~~aGa~v~~pgCg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~-~~~~yLaSP~~vAAsAiaG 818 (865)
T 1l5j_A 751 EGYYSVFGKSGARIEIPGCSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGT-GANVFLASAELAAVAALIG 818 (865)
T ss_dssp TTHHHHHHHHTCEECCSSCGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSST-TCEEEECCHHHHHHHHHHS
T ss_pred cCcHHHHHHcCCEEcCCccccccCcCCcC--------CCCCE---EEecCCcCCCCCCCC-CcceEECCHHHHHHHHhCC
Confidence 99999999999999999999999998654 46775 689999999999995 5689999999999999999
Q ss_pred cccccccCCCcccCCCCcccccccCCCChHHHHHHhhhccCch
Q 005323 371 SVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPD 413 (702)
Q Consensus 371 ~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ei~~~~~~~~~~~ 413 (702)
+| |+.+|+.++++..++|+
T Consensus 819 ~i------------------------~~p~e~~~~~~~~~~~~ 837 (865)
T 1l5j_A 819 KL------------------------PTPEEYQTYVAQVDKTA 837 (865)
T ss_dssp BC------------------------CCHHHHHHHHHHHHTTH
T ss_pred cC------------------------CCHHHHHHHHHhhcCCc
Confidence 99 34457777777777773
No 4
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.7e-41 Score=329.40 Aligned_cols=156 Identities=31% Similarity=0.499 Sum_probs=130.0
Q ss_pred EeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 005323 474 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 553 (702)
Q Consensus 474 l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~ 553 (702)
++++|||||||||||| +||+ |.|.+.+++++|.++|.
T Consensus 7 v~~~~dnIdTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~p------------------ 43 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIPG----------PYLR---------------TTDPYELASHCMAGIDE------------------ 43 (170)
T ss_dssp EEECCSCCBHHHHSCG----------GGGS---------------CCCHHHHHTTTTTTTCT------------------
T ss_pred EEECCCCCChhhcChH----------HHhC---------------CCCHHHHHHHhcccCCC------------------
Confidence 6889999999999998 8985 45778889999999762
Q ss_pred CcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhh
Q 005323 554 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 633 (702)
Q Consensus 554 g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 633 (702)
+.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+ ++.
T Consensus 44 -------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~ 109 (170)
T 2pkp_A 44 -------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TDE 109 (170)
T ss_dssp -------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GGG
T ss_pred -------chHHhCCC---CCEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHhhHHHCCCceEEec----HHH
Confidence 22234543 6899999999999999999999999999999999999999999999999999997 444
Q ss_pred ccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhhh
Q 005323 634 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 699 (702)
Q Consensus 634 l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 699 (702)
+ .++++++||+.. + +++ +..+|++++|. ..++.+++++++||+|||++++++.
T Consensus 110 l--~~gd~i~idl~~-------~-~v~-~~~~g~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~~ 162 (170)
T 2pkp_A 110 I--KDGDIVEIDLDK-------E-EIV-ITNKNKTIKCE--TPKGLEREILAAGGLVNYLKKRKLI 162 (170)
T ss_dssp C--CTTCEEEEETTT-------T-EEE-EGGGTEEEECB--CCCHHHHHHHHTTSHHHHHHHHHHH
T ss_pred c--CCCcEEEEECCC-------C-EEE-ECCCCeEEEEE--eCCHHHHHHHHcCCHHHHHHHHHHh
Confidence 4 577889999753 3 232 23568887773 3489999999999999999998764
No 5
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=3.7e-42 Score=399.23 Aligned_cols=281 Identities=19% Similarity=0.249 Sum_probs=218.8
Q ss_pred CCCCCCCc------cCCccccCHHHHHHHHhcccccccccCCCcccCCCCccc-ccccCCCChHHHH----HHhhh-ccC
Q 005323 344 FEGRVHPL------TRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKI-FLRDIWPSSEEVA----HVVQK-SVL 411 (702)
Q Consensus 344 F~GR~g~~------~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v-~l~diwP~~~ei~----~~~~~-~~~ 411 (702)
|.+|+.|. +++.||+|| |.+++..+.|+.++.+++||+...|..| +|.|+| +.+|+. +.+.. .+.
T Consensus 49 ~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~l~ 125 (865)
T 1l5j_A 49 LTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTLLM 125 (865)
T ss_dssp HHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCCTT
T ss_pred HHcCCCCCCChHHHHHHHHHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHh-CchhhHHHHHHHHHhhhcc
Confidence 78899888 778899999 6689999999999999999999999999 899999 555665 66655 555
Q ss_pred chhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCCCCCcCccccCCC
Q 005323 412 PDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGS 491 (702)
Q Consensus 412 ~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gdnitTD~I~PaG~ 491 (702)
.++|.++|+....|++.|+++ .+.|.+.+-+..+|+. ++.|++ + +.++|||||||||||+
T Consensus 126 ~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~----------~~~i~g-~-v~~~~~nIdTD~IiPa-- 185 (865)
T 1l5j_A 126 FDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPAL----------AEKLTV-T-VFKVTGETNTDDLSPA-- 185 (865)
T ss_dssp TTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCC----------CSCEEE-E-EEEEEEEEEHHHHSCG--
T ss_pred HHHHHHHHHHHhccCHHHHHH------HHhcccccccccCCCC----------CceEEE-E-EEecCCCCchhccCch--
Confidence 889999999999999999764 6889887755544443 345644 4 4667999999999999
Q ss_pred CCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccccHHHHHHhhCC
Q 005323 492 IHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGH 571 (702)
Q Consensus 492 i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~~~a~~y~~~~~ 571 (702)
+||.. |.+.+.+++++|.++|.. ..|.+. ++. ..+....+++..|
T Consensus 186 --------~~l~~--------------~~d~~~~a~~lf~~~r~~-------~~p~f~----~~~-~~~~~i~~~~~~G- 230 (865)
T 1l5j_A 186 --------PDAWS--------------RPDIPLHALAMLKNAREG-------IEPDQP----GVV-GPIKQIEALQQKG- 230 (865)
T ss_dssp --------GGGGG--------------TTSHHHHGGGTTCSCBTT-------BCCSBT----TTB-CSHHHHHHHHTTS-
T ss_pred --------hhhhc--------------CCCHHHHHHHHhhccccC-------CCcccc----ccc-cchhhhhhhhcCC-
Confidence 89944 345566799999987721 112111 010 0123345566554
Q ss_pred ceEEEeCCccCCCCCcccccchh-------------hhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCC
Q 005323 572 DTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTG 638 (702)
Q Consensus 572 ~~iiVaG~nfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~ 638 (702)
..|||+|+|||||||||||+|++ +.+| ++|||+||+||||+||+|+|+|||+++ .+.+ ..
T Consensus 231 ~~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~l--~~ 303 (865)
T 1l5j_A 231 FPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSNL--NM 303 (865)
T ss_dssp SCEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTTC--CT
T ss_pred CEEEEECCceecCcchHHHHHHHHHHhcCCCcCCchhhcC-CeEEechHHHHHHHHHHHcCCceEEec----Hhhc--CC
Confidence 46999999999999999999999 9999 999999999999999999999999996 3333 46
Q ss_pred CeeEEEecCCCcccCCCCceEEEEcCCCeE-EEEEEecCCHHHHHHHHhcCHHHHHHHHhhhh
Q 005323 639 HERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLINV 700 (702)
Q Consensus 639 ~e~~~idl~~~~~~~~~g~~~~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~~ 700 (702)
+++++||+.. ++++ ...+|++ ++|++. ++.+++++++||+++|++++.+++
T Consensus 304 Gd~i~Idl~~--------g~I~-~~~~g~~~~~f~~~--p~~~~~~v~AGGli~~i~~r~l~~ 355 (865)
T 1l5j_A 304 GDVIDVYPYK--------GEVR-NHETGELLATFELK--TDVLIDEVRAGGRIPLIIGRGLTT 355 (865)
T ss_dssp TCEEEEETTT--------TEEE-ETTTCCEEEECCCS--CTHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CCEEEEECCC--------CEEE-EcCCCeEEEEEEeC--CHHHHHHHHcCChhhhhhcchHHH
Confidence 7889999864 2232 2256765 777653 889999999999999999988754
No 6
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=100.00 E-value=6.9e-41 Score=324.40 Aligned_cols=151 Identities=34% Similarity=0.510 Sum_probs=126.0
Q ss_pred EeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 005323 474 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 553 (702)
Q Consensus 474 l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~ 553 (702)
++++|||||||||||| +||+ |+|.+.+++++|.+++.
T Consensus 7 ~~~~~dnidTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~p------------------ 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITPG----------RYNL---------------TKDPKELAKIAFIEVRP------------------ 43 (163)
T ss_dssp EEECCSCCBHHHHSCT----------TSCC---------------CSCHHHHHHHTTTTTCT------------------
T ss_pred EEEcCCCCChhccchH----------HHhC---------------CCCHHHHHHHhCCccCc------------------
Confidence 6799999999999998 7886 46778889999998762
Q ss_pred CcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhh
Q 005323 554 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 633 (702)
Q Consensus 554 g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 633 (702)
+.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||+|||+|+ ++.
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~ 109 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TEG 109 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CTT
T ss_pred -------chHHhCCC---CCEEEecCcCCCCCCHHHHHHHHHHhCCCEEEEchHHHHHHhhHHHCCCceEEec----HHH
Confidence 22345544 5799999999999999999999999999999999999999999999999999997 333
Q ss_pred ccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeE-EEEEEecCCHHHHHHHHhcCHHHHHHHHh
Q 005323 634 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNL 697 (702)
Q Consensus 634 l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGll~~v~~~~ 697 (702)
+.++++++||+.. + + |+ +|++ +++. ..++.+++++++||+|||+++++
T Consensus 110 --l~~gd~i~idl~~-------~-~--v~--~g~~~~~~~--~~~~~~~~~l~aGGll~~~~~~~ 158 (163)
T 1v7l_A 110 --LKDGDLVTVNWET-------G-E--VR--KGDEILMFE--PLEDFLLEIVREGGILEYIRRRG 158 (163)
T ss_dssp --CCTTCEEEEETTT-------T-E--EE--ETTEEEECE--ECCHHHHHHHHTTSHHHHHHHSC
T ss_pred --cCCCcEEEEEccC-------C-E--EE--CCcEEEEEE--cCCHHHHHHHHcCCHHHHHHHHH
Confidence 3577889999754 3 2 33 5666 6663 34899999999999999999875
No 7
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=100.00 E-value=1.4e-40 Score=333.62 Aligned_cols=180 Identities=23% Similarity=0.361 Sum_probs=136.8
Q ss_pred CCCCCCCCCCCCCCCCc--cceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhcccc
Q 005323 452 PPYFKDMTMSPPGPHGV--KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGT 529 (702)
Q Consensus 452 pp~~~~~~~~~~~~~~i--~~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~ 529 (702)
.|||.++.......+.+ ..++++.+.|||||||||||| +||+. +++++| ++++
T Consensus 5 ~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~l-------------~~~~ 59 (213)
T 2hcu_A 5 ASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKGF-------------GKYL 59 (213)
T ss_dssp --------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSCC-------------GGGT
T ss_pred ccccCCcccccccCCCceEEEEEEEEcCCCCCChhhcchH----------HHhCc--CCHHHH-------------HHHH
Confidence 46777765554443333 467898888999999999999 99985 666665 8999
Q ss_pred ccchhhhhhhcCCCCCCceeccCCCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhh
Q 005323 530 FANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFER 609 (702)
Q Consensus 530 F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFar 609 (702)
|+++|+.|+ +|.++|. |+.+. ++|+. +.|||||+|||||||||||+|+|+++||+||||+||+|
T Consensus 60 f~~~r~~~~--~g~~~p~----------f~~~~-~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFAr 123 (213)
T 2hcu_A 60 MYEWRYLDN--NYTENPD----------FIFNQ-PEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGD 123 (213)
T ss_dssp THHHHBSST--TCCBCTT----------SGGGS-GGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCH
T ss_pred hhccccccc--CCCCCCC----------ccccc-hhhcC---CcEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHH
Confidence 999999875 5555543 34444 46765 78999999999999999999999999999999999999
Q ss_pred HHhhhhccCcccceecCCccchhhcc-CCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhc
Q 005323 610 IHRSNLVGMGIIPLCFKPGEDAETHG-LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 687 (702)
Q Consensus 610 If~~Nlin~Gilpl~~~~~~~~~~l~-~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aG 687 (702)
|||+||+|||||||+|+++ +++.|. ...+++++||++. ++|+ ..+| +++|++ ++..+++|.+|
T Consensus 124 IF~~N~in~GlLpl~~~~~-~~~~l~~~~~G~~i~VDl~~--------~~I~--~~~g-~~~f~i---~~~~k~~l~~G 187 (213)
T 2hcu_A 124 IHYNNDLNNGILPIIQPKE-VRDKLAKLKPTDEVTVNLFE--------QKIY--SPVG-DFSFDI---DGEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHTTTCEEEECCHH-HHHHHHTSCTTCEEEEETTT--------TEEE--ETTE-EEECCC---CHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEeCHH-HHHHHhccCCCCEEEEECCC--------CEEE--ECCc-eEEEeC---CHHHHHHHHcC
Confidence 9999999999999999753 455552 2567889999975 3333 3456 777773 68999999988
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.6e-40 Score=321.14 Aligned_cols=161 Identities=25% Similarity=0.440 Sum_probs=131.5
Q ss_pred ceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCcee
Q 005323 470 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 549 (702)
Q Consensus 470 ~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~ 549 (702)
..+++ ++|||||||+|+|+ +||+ +.|.+.+++++|.++|.
T Consensus 6 ~g~v~-~~gdnIdTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~p-------------- 45 (176)
T 3vba_A 6 KGRVW-KFGNNVDTDAILPA----------RYLV---------------YTKPEELAQFVMTGADP-------------- 45 (176)
T ss_dssp EEEEE-ECCSSCBHHHHSCG----------GGTT---------------CCSHHHHGGGTTTTTCT--------------
T ss_pred EEEEE-EeCCCcchhhcCcH----------HHhC---------------cCCHHHHHHhhCcCCCc--------------
Confidence 34554 88999999999999 8985 35677889999999762
Q ss_pred ccCCCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCcc
Q 005323 550 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 629 (702)
Q Consensus 550 ~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~ 629 (702)
+.+++|+. ++|||||+|||||||||||+|+|+++||+||||+||+|||++||+|+|+||++++ +
T Consensus 46 -----------~F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~ 109 (176)
T 3vba_A 46 -----------DFPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--G 109 (176)
T ss_dssp -----------THHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--T
T ss_pred -----------cHHHhcCC---CCEEEeCCCccCCccHHHHHHHHHHhCCcEEEeccHHHHHHhhHHHcCCCeEEcc--h
Confidence 22356764 5899999999999999999999999999999999999999999999999998886 3
Q ss_pred chhhccCCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhhh
Q 005323 630 DAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 699 (702)
Q Consensus 630 ~~~~l~~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 699 (702)
+++.+ ..+++++||+.. ++++. ..+|+++.+.. + ++.+++++++||++||+++++..
T Consensus 110 ~~~~~--~~gd~i~idl~~--------~~v~~-~~~g~~~~~~~-l-~~~~~~ii~aGGli~~~k~~~~~ 166 (176)
T 3vba_A 110 ISEKV--NEGDELEVNLET--------GEIKN-LTTGEVLKGQK-L-PEFMMEILEAGGLMPYLKKKMAE 166 (176)
T ss_dssp HHHHC--CTTCEEEEETTT--------CEEEE-TTTCCEEECCC-C-CHHHHHHHHHTSHHHHHHHHHHT
T ss_pred HHHhc--CCCCEEEEECCC--------CEEEe-CCCCeEEEEec-C-CHHHHHHHHcCCHHHHHHHhcch
Confidence 45554 467889999864 22322 34678887762 3 89999999999999999998754
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=100.00 E-value=9e-38 Score=310.38 Aligned_cols=163 Identities=22% Similarity=0.349 Sum_probs=129.4
Q ss_pred ceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCcee
Q 005323 470 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 549 (702)
Q Consensus 470 ~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~ 549 (702)
..+++.+.+||||||+|||+ |||+. +++++| ++++|++||+.. +|.+.
T Consensus 11 ~G~a~~l~~dnIDTD~IIP~----------~fL~~--~~~~~l-------------g~~~f~~~R~~~---~g~~~---- 58 (203)
T 3q3w_A 11 KGIACPLEYANIDTDQIIPK----------QFLLA--VSKQGF-------------GKHLFHDLRYLD---DKESV---- 58 (203)
T ss_dssp EEEEEEECCSSCBHHHHSCG----------GGCBS--SCSSCS-------------GGGTTHHHHBSS---SSSCS----
T ss_pred EEEEEECCCcccChhhcchH----------HHcCc--CCHHHH-------------HHhhhhhhhccc---cCCCC----
Confidence 55677777799999999999 99975 666665 889999999842 33321
Q ss_pred ccCCCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCcc
Q 005323 550 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 629 (702)
Q Consensus 550 ~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~ 629 (702)
-+..|++++ ++|+. .+|||||+|||||||||||+||++.+||+||||+||+||||+||+|+|||||++++.
T Consensus 59 ----~~pdF~~n~-~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~~~- 129 (203)
T 3q3w_A 59 ----LNMDFNLNK-KEYQN---SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELAKD- 129 (203)
T ss_dssp ----BCTTSGGGS-GGGTT---EEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECCHH-
T ss_pred ----CCCChhhcc-cccCC---CCEEEeCCCCCCCCcHHHHHHHHHHcCceEEEECcHHHHHHHHHHhCCCCeEEeCHH-
Confidence 023466766 56765 689999999999999999999999999999999999999999999999999999863
Q ss_pred chhhcc----CCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhc
Q 005323 630 DAETHG----LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 687 (702)
Q Consensus 630 ~~~~l~----~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aG 687 (702)
..+.|. ...+++++|||+. ++ |+. +|++++|.+ ++..++.|.+|
T Consensus 130 ~~~~l~~~~~~~~g~~i~VDL~~--------~~--i~~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 130 EVLEIVDELKKSQDKNIEISLLE--------KR--VFF-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp HHHHHHHHHHHCSCCEEEEETTT--------TE--EEE-TTEEEECCC---CHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCCCEEEEECCC--------CE--EEE-CCEEEEEEe---CHHHHHHHHcC
Confidence 344442 1467889999975 33 333 678888875 58888888887
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=100.00 E-value=1.6e-36 Score=293.99 Aligned_cols=155 Identities=25% Similarity=0.334 Sum_probs=123.4
Q ss_pred ceeEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCcee
Q 005323 470 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 549 (702)
Q Consensus 470 ~a~~l~~~gdnitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~ 549 (702)
..+++.+.|||||||+|+|+ +||+. +++++ |++++|.+||. .|.
T Consensus 11 ~G~~~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~~~f~~~R~---------~p~-- 54 (171)
T 3h5j_A 11 SGIGVPLRRSNVDTDQIIPA----------VFLKR--VTRTG-------------FEDGLFAGWRS---------DPA-- 54 (171)
T ss_dssp EEEEEEECCCSCCHHHHSCG----------GGTTC--CSCSC-------------CGGGTTTTGGG---------STT--
T ss_pred EEEEEEccCCccCcccCCch----------hhcCC--CCHHH-------------HHHHhhccCcC---------CcC--
Confidence 66788889999999999999 89985 44444 58899999983 121
Q ss_pred ccCCCcccccccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCcc
Q 005323 550 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 629 (702)
Q Consensus 550 ~~p~g~~~~v~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~ 629 (702)
|+.++ ++|+. .+|||||+|||||||||||+|+++.+||++|||+||+|||++||+|+|+|||++++.
T Consensus 55 --------F~~~~-~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~~~- 121 (171)
T 3h5j_A 55 --------FVLNL-SPFDR---GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQD- 121 (171)
T ss_dssp --------SGGGS-TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECCHH-
T ss_pred --------ccccc-cccCC---CcEEEeCCCccCCcCHHHHHHHHHHhCCcEEEECcHHHHHHhHHHHcCCceEEeCHH-
Confidence 34444 56764 689999999999999999999999999999999999999999999999999999853
Q ss_pred chhhcc----CCCCeeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhc
Q 005323 630 DAETHG----LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 687 (702)
Q Consensus 630 ~~~~l~----~~~~e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aG 687 (702)
..+.|. ...+++++||++. ++ |+. +|++++|++ .+..++.|.+|
T Consensus 122 ~~~~l~~~~~~~~g~~i~VDl~~--------~~--i~~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 122 DVELLWKLIEQSPGLEITANLQD--------RI--ITA-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp HHHHHHHHHHHSTTCEEEEETTT--------TE--EEE-TTEEEECBC---CHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCCcEEEEECCC--------CE--EEE-CCEEEEEEE---CHHHHHHHHhC
Confidence 345541 1467889999975 23 333 577788876 47777777765
No 11
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=50.16 E-value=11 Score=33.61 Aligned_cols=33 Identities=39% Similarity=0.589 Sum_probs=26.0
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 005323 237 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 270 (702)
Q Consensus 237 ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~ 270 (702)
|++|++|.+|--.-.| ||+.|.+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTym-AaeaL~~aA~~~G~~ik 37 (106)
T 2r4q_A 5 ILAVTACPTGIAHTFM-AADALKEKAKELGVEIK 37 (106)
T ss_dssp EEEEEECSCC--CHHH-HHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 4789999999877765 78888888999998776
No 12
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=48.89 E-value=12 Score=33.54 Aligned_cols=33 Identities=39% Similarity=0.519 Sum_probs=27.3
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 005323 237 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 270 (702)
Q Consensus 237 ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~ 270 (702)
|++|++|.+|--.-.| ||+.|.+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTym-AaeaL~~aA~~~G~~ik 37 (106)
T 2r48_A 5 LLAITSCPNGIAHTYM-AAENLQKAADRLGVSIK 37 (106)
T ss_dssp EEEEEECSSCSHHHHH-HHHHHHHHHHHHTCEEE
T ss_pred EEEEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 5889999999766655 78888888999898776
No 13
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=41.05 E-value=15 Score=33.17 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=27.2
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 005323 237 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 270 (702)
Q Consensus 237 ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~ 270 (702)
|+.|++|..|--.-.| ||+.|.+.|.+.|..++
T Consensus 8 IvaVTaCptGiAHTyM-AAeaL~~aA~~~G~~ik 40 (111)
T 2kyr_A 8 LIALCACPMGLAHTFM-AAQALEEAAVEAGYEVK 40 (111)
T ss_dssp EEEEEEESSCHHHHHH-HHHHHHHHHHHTSSEEE
T ss_pred EEEEEcCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 5889999999766655 78888888999998776
No 14
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=36.91 E-value=18 Score=32.26 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=27.1
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 005323 237 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 270 (702)
Q Consensus 237 ia~IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~ 270 (702)
|+.|++|.+|--...| ||+.|.+.|.++|..++
T Consensus 5 ivaVtaCptGiAhTym-AAeaLekaA~~~G~~ik 37 (106)
T 2m1z_A 5 IIAVTACATGVAHTYM-AAQALKKGAKKMGNLIK 37 (106)
T ss_dssp EEEEEECSSCHHHHHH-HHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCcHHHHHH-HHHHHHHHHHHCCCEEE
Confidence 4789999999877655 67888888889998776
Done!